Citrus Sinensis ID: 016318

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHccccEEEcccccccccEEEEcccccccEEEccccEEEEEEccccEEEEEcccccccccccccccccccEEEcccccccEEEEEccccEEEEEEccccEEEEEccccEEEEEEEEcccEEcccccccEEcccccEEEEcccccccccccEEEccccccccEEEEEccccccEEEEEcccccccEEEEcccccEEEEEEccccEEEEEEEccccccccEEEEEcccccccEEEcccccEEEEEcccccHHHHHHcccHHHHHHHHcccccccccEEEEEccccEEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEcccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccEEEccccccEEEEccccEEEEEccccEEEEEEEccccccccccccccccccccccccccccEEEEccccccEEEEEccccEEEEcccccEEEEEEcccccccEEEcccccEccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEEccHHHEEEEEEcccccccEEEEEccccccccccccccccEEEEEccccccHHHHHcccHHHHHHHHHccccHccHHHHHccccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccEEEEEEccccEEEEEEcc
Coil and Loop (DISEMBL)
MTPRGFLGLVILLLAMYcgldplkhsaisefpdfvshkvdmppwsliptvkddknllQNSEIKFLnqiqgpesmafdplgrgpytgvadgrilfwdglkwtdfaftsnnrselcnpkpiatsylknehicgrplglrfdkktgdlYIADAYFGlmkvgpegglatslateaegvplrftndldiddegnvyftdsstnyqRRNFMQLVFSAEdtgrvlkydpttkQTTVLLRNlqfpnglslskdksffvfcegsvgrlHKYWLIgekagnleafailpgypdnvrtnekgEFWVAIHCRRSLYSHLMALYPKIRHFLLKlpisakthYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEekdgklwmgsVLMPFVAVYDLS
Flexible Loop (DISEMBL)
MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFtsnnrselcnpkPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEgvplrftndldiddeGNVYFtdsstnyqrRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEveekdgklwmgsvLMPFVAVYDLS
Low Complexity Region (SEG)
MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS
Disordered region (IsUnstruct)
****GFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYD**
Disordered Region (DISOPRED)
***RGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS
Disordered Region (DISEMBL)
MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS
Disordered Region (DISPRO)
*TPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	391	2.2.26 [Sep-21-2011]
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.826	0.776	0.344	2e-47
Q803F5	415	Adipocyte plasma membrane	yes	no	0.823	0.775	0.352	4e-46
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.930	0.877	0.324	8e-46
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.930	0.968	0.324	1e-45
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.808	0.766	0.351	6e-45
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.813	0.764	0.343	3e-44
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.846	0.797	0.348	4e-44
P92976	329	Strictosidine synthase 3	no	no	0.726	0.863	0.354	2e-43
P94111	335	Strictosidine synthase 1	no	no	0.728	0.850	0.341	8e-41
P68174	342	Strictosidine synthase (F	N/A	no	0.731	0.836	0.327	6e-40

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  190 bits (482), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 179/340 (52%), Gaps = 17/340 (5%)

Query: 57  LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNP 116
           L+ ++  F +Q+ GPES+A    G   YTG ADG+I+  +G   T  A            
Sbjct: 87  LREAQRLFEDQLVGPESIA--NFGDLIYTGTADGKIVKIEGKSITVIARLG--------- 135

Query: 117 KPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAE---G 173
           KP      + E  CGRPLG+R     G L++ADAY GL KV P  G  T+L +  +   G
Sbjct: 136 KPPCDGSREQEPSCGRPLGIRVGP-NGTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGG 194

Query: 174 VPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR 232
             L F NDLD+  +G  VYFTDSS+ +QRR+++ L+  A   GRVL+YD  TK+ TVL+ 
Sbjct: 195 RRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLME 254

Query: 233 NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKG 291
           NL+F NG+ L  D+   +  E ++ R+ +  + G   G ++ F   LPG+PDN+R +  G
Sbjct: 255 NLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSG 314

Query: 292 EFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKIL 351
            +WVA+   R      M  +   + ++ KL     +  ++      +++ ++    G  +
Sbjct: 315 GYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIFKLFSQDVLMKFVPRYSLVIELQESGACM 374

Query: 352 QVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 391
           +   D  G V   +SE  E DG L++GS   P++   DLS
Sbjct: 375 RSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLS 414

Salmo salar (taxid: 8030)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  186 bits (471), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 179/340 (52%), Gaps = 18/340 (5%)

Query: 57  LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNP 116
           L+ +E  F  ++ GPES+A   +G   YTG ADG+I+  +G      A            
Sbjct: 87  LRQAERLFEERLVGPESLA--NIGDVFYTGTADGKIVKIEGRNIHVLATIG--------- 135

Query: 117 KPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAE---G 173
           KP   S  ++EH CGRPLG+R     G L++ADAY GL +V P  G   SL +  +   G
Sbjct: 136 KPPCGSR-EHEHTCGRPLGIRVGP-NGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAG 193

Query: 174 VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR 232
             L F NDLD+  +G  VYFTDSS+ +QRR+FM L+  A   GRVL+YD  TK+  V++ 
Sbjct: 194 RRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMME 253

Query: 233 NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF-AILPGYPDNVRTNEKG 291
           NL+FPNG+ L  D+   +  E ++ R+ +  + G   G ++ F   LPG+PDN+R +  G
Sbjct: 254 NLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSG 313

Query: 292 EFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKIL 351
            +WVA+   R      M  +   R +L KL     +   +      +++ V+   +G  +
Sbjct: 314 GYWVAMSAVRPNPGFSMLDFLSQRPWLKKLIFKLFSQDTLLKFVPRYSLVVELQSDGTCV 373

Query: 352 QVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 391
           +   D +G V    SE  E  G L++GS   P++   DLS
Sbjct: 374 RSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDLS 413

Danio rerio (taxid: 7955)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  184 bits (468), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 198/391 (50%), Gaps = 27/391 (6%)

Query: 9   LVILLLAMYCGLDPLKHSAISEFP-DFVSHKVDMPPW---SLIPTVKDDKNLLQNSEIKF 64
           +  L+LA+   +  L    + E P D  S     PP+    L P  K     L+ +E  F
Sbjct: 40  MTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLHPNTK-----LRQAERLF 94

Query: 65  LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYL 124
            NQ+ GPES+    +G   +TG ADGR++    L+  +    +   S  C  +       
Sbjct: 95  ENQLSGPESIV--NIGDVLFTGTADGRVV---KLENGEIETIARFGSGPCKTR------- 142

Query: 125 KNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEG---GLATSLATEAEGVPLRFTND 181
            +E  CGRPLG+R     G L++ DAY GL +V P+     L  S  T  EG  + F ND
Sbjct: 143 DDEPTCGRPLGIR-AGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVND 201

Query: 182 LDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGL 240
           L +  +G  +YFTDSS+ +QRR+++ LV  A D GR+L+YD  TK+  VLL  LQFPNG+
Sbjct: 202 LTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGV 261

Query: 241 SLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHC 299
            LS ++ F +  E ++ R+ + ++ G   G  + F   +PG+PDN+R +  G +WVA   
Sbjct: 262 QLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAAT 321

Query: 300 RRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKG 359
            R+     M  +   + F+ ++     +   +      +++ ++ S  G   + L D  G
Sbjct: 322 IRANPGFSMLDFLSDKPFIKRMIFKMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDG 381

Query: 360 KVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 390
           +VV  +SE  E DG L++GS   PF+    L
Sbjct: 382 QVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 197/391 (50%), Gaps = 27/391 (6%)

Query: 9   LVILLLAMYCGLDPLKHSAISEFP-DFVSHKVDMPPW---SLIPTVKDDKNLLQNSEIKF 64
           +  L+LA+   +  L    + E P D  S     PP+    L P  K     L+ +E  F
Sbjct: 1   MTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLQPNTK-----LRQAERLF 55

Query: 65  LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYL 124
            NQ+ GPES+    +G   +TG ADGR++    L+  +    +   S  C  +       
Sbjct: 56  ENQLNGPESIV--NIGDVLFTGTADGRVV---KLENGEIETIARFGSGPCKTR------- 103

Query: 125 KNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEG---GLATSLATEAEGVPLRFTND 181
            +E  CGRPLG+R     G L++ DAY GL +V P+     L  S  T  EG  + F ND
Sbjct: 104 DDEPTCGRPLGIRVGP-NGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVND 162

Query: 182 LDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGL 240
           L I  +G  +YFTDSS+ +QRR+++ LV    D GR+L+YD  TK+  VLL  LQFPNG+
Sbjct: 163 LTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGV 222

Query: 241 SLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHC 299
            LS ++ F +  E ++ R+ + ++ G   G  + F   +PG+PDN+R +  G +WVA   
Sbjct: 223 QLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAAT 282

Query: 300 RRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKG 359
            R+     M  +   + F+ ++     +   +      +++ ++ S  G   + L D  G
Sbjct: 283 IRANPGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDG 342

Query: 360 KVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 390
           +VV  +SE  E DG L++GS   PF+    L
Sbjct: 343 QVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 373

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  181 bits (460), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 181/336 (53%), Gaps = 20/336 (5%)

Query: 57  LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRIL-FWDGLKWTDFAFTSNNRSELCN 115
           LQ +E  F NQ+ GPES+A   +G   +TG ADGR++   +G   T   F S        
Sbjct: 87  LQQAERLFENQLVGPESIA--NIGDVMFTGTADGRVVKLENGEVETIARFGSG------- 137

Query: 116 PKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP---EGGLATSLATEAE 172
             P  T    +E  CGRPLG+R     G L++ DAY GL +V P   E  L  S  T  E
Sbjct: 138 --PCKTR--DDEPACGRPLGIR-AGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIE 192

Query: 173 GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 231
           G  + F NDL +  +G  +YFTDSS+ +QRR+++ L+    D GR+L+YD  TK+  VLL
Sbjct: 193 GRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLL 252

Query: 232 RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEK 290
            +L+FPNG+ LS  + F +  E ++ R+ ++++ G   G  + F   LPG+PDN+R +  
Sbjct: 253 DHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSS 312

Query: 291 GEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKI 350
           G +WV++   R+     M  +   R FL K+     +   +      +++ ++ S  G  
Sbjct: 313 GGYWVSMAAIRANPGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDSGTF 372

Query: 351 LQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVA 386
           L+ L D +G+VV  +SE  E  G L++GS   P++ 
Sbjct: 373 LRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYLC 408

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  179 bits (455), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 181/344 (52%), Gaps = 26/344 (7%)

Query: 57  LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNP 116
           L+ +E  F NQ+ GPES+A   +G   +TG ADGR++    L+  +    +   S  C  
Sbjct: 88  LRQAERLFENQLVGPESIAH--IGDVMFTGTADGRVV---KLENGEIETIARFGSGPCKT 142

Query: 117 KPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP---EGGLATSLATEAEG 173
           +        +E +CGRPLG+R     G L++ADAY GL +V P   E  L  S  T  EG
Sbjct: 143 R-------DDEPVCGRPLGIR-AGPNGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEG 194

Query: 174 VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR 232
             + F NDL +  +G  +YFTDSS+ +QRR+++ LV    D GR+L+YD  T++  VLL 
Sbjct: 195 KNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLD 254

Query: 233 NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKG 291
            L+FPNG+ LS  + F +  E ++ R+ + ++ G   G  + F   +PG+PDN+R +  G
Sbjct: 255 QLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSG 314

Query: 292 EFWVAIHCRRSL--YSHL--MALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPE 347
            +WV +   R    +S L  ++  P I+  + KL         +      +++ ++ S  
Sbjct: 315 GYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVP----RYSLVLELSDS 370

Query: 348 GKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 391
           G   + L D  G V   ISEV E DG L++GS   PF+    L 
Sbjct: 371 GAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSLQ 414

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  179 bits (453), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 186/359 (51%), Gaps = 28/359 (7%)

Query: 42  PPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWT 101
           PP  L+  V +  N LQ +E  + NQ+ GPES+    +G   +TG ADG+IL     K  
Sbjct: 74  PP--LLTGVLEPNNKLQKAERLWENQLVGPESIVN--IGDVLFTGTADGKIL-----KIE 124

Query: 102 DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEG 161
           D    +  R       P  T   ++E  CGRPLG+R       L++ADAY+GL +V P  
Sbjct: 125 DGEVQTVAR---IGHGPCGTP--EDEPTCGRPLGIRVGPNN-TLFVADAYYGLYEVNPGT 178

Query: 162 G---LATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRV 217
           G   +  S  T  EG  L F NDL +  +G  +YFTDSS+ +QRR+F+ LV    D GR+
Sbjct: 179 GETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRL 238

Query: 218 LKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI 277
           L+YD  TK+  VL+  L+FPNG+ LS  + F +  E ++ R+ +Y++ G   G  + F  
Sbjct: 239 LEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVE 298

Query: 278 -LPGYPDNVRTNEKGEFWVAIHCRRSL--YSHL--MALYPKIRHFLLKLPISAKTHYLIH 332
            +PG PDN+R +  G +WVA+   R    +S L  ++  P I+  + KL        L+ 
Sbjct: 299 NMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQETVTKLLP 358

Query: 333 VGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 391
                 ++ V+ S  G   +   D  G  V  +SE  E +G L++GS   PF+   +L 
Sbjct: 359 K----RSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNLQ 413

Gallus gallus (taxid: 9031)

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/327 (35%), Positives = 164/327 (50%), Gaps = 43/327 (13%)

Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLK-WTDFA-FTSNNRSELCNPKPIATSYLKNE 127
           GPE+ AFD  G+G YTGV  G+IL +   K + DFA  T++++S LC+     T    N 
Sbjct: 40  GPEAFAFDSTGKGFYTGVTGGKILKYLPKKGYVDFAQITNSSKSSLCDGALGTT----NV 95

Query: 128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-D 186
             CGRP G+ F+ KTGDLY+ADA  GL  +   GGLA  +A    G P  F + LD+D  
Sbjct: 96  EKCGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPT 155

Query: 187 EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDK 246
            G VYFT  S+ +  R+ ++ V + + TG+  KYDP+ K  TVL+  L    G ++S D 
Sbjct: 156 TGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDG 215

Query: 247 SFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV-RTNEKGEFWVAIHCRRSLYS 305
           SF +  + +   + +YW+ G KAG  E F      PDN+ R    G FWVA     +   
Sbjct: 216 SFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSNPDNIKRIGSTGNFWVASVVNSAT-- 273

Query: 306 HLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQV--LEDSKGKVVK 363
                                        G  +  AVK S  GK+LQ   L+D  G  + 
Sbjct: 274 -----------------------------GPTNPSAVKVSSAGKVLQTIPLKDKFGDTL- 303

Query: 364 AISEVEEKDGKLWMGSVLMPFVAVYDL 390
            +SEV E  G+L++G++  PF  +  L
Sbjct: 304 -VSEVNEYKGQLYIGALFGPFAGILKL 329

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score =  168 bits (425), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 167/328 (50%), Gaps = 43/328 (13%)

Query: 69  QGPESMAFDPLGRGPYTGVADGRIL-FWDGLKWTDFA-FTSNNRSELCNPKPIATSYLKN 126
            GPE+ AFD  G+G YTGV+ G+IL +     + DFA  T ++ S  C+   I T+    
Sbjct: 37  SGPEAFAFDSTGKGFYTGVSGGKILKYLPETGYVDFAQITESSNSSWCD-GTIGTALAGR 95

Query: 127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID- 185
              CGRP G+ F++KTGDLY+ADA  GL  + P GGLAT +    +G P +F + LD+D 
Sbjct: 96  ---CGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDP 152

Query: 186 DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKD 245
             G VYFT  S+ +     +  +   + TG++ KYDP+TK  TVL+  L    G ++S D
Sbjct: 153 TTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSD 212

Query: 246 KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV-RTNEKGEFWVAIHCRRSLY 304
            SF +  + +   + +YW+ G KAG+ E F      PDN+ R    G FWVA    +   
Sbjct: 213 GSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSNPDNIKRIGSTGNFWVASVVNK--- 269

Query: 305 SHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQV--LEDSKGKVV 362
                         + +P               +  AVK +  G++LQ   L+D  G  +
Sbjct: 270 --------------IIVPT--------------NPSAVKVNSNGEVLQTIPLKDKFGDTL 301

Query: 363 KAISEVEEKDGKLWMGSVLMPFVAVYDL 390
             +SEV E +G L++G++  PF  +  L
Sbjct: 302 --LSEVNEFEGNLYIGTLTGPFAGILKL 327

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1

 Score =  165 bits (417), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 162/327 (49%), Gaps = 41/327 (12%)

Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSN--NRSELCNPKPIATSYLK 125
            P S  FD   +G YT V DGR++ ++G    + DFA+ S   N++  C     A    +
Sbjct: 40  APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKA-FCENSTDA----E 94

Query: 126 NEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
              +CGR   + ++ +   LYI D Y+ L  VG EGG AT LAT  +GVP ++   + +D
Sbjct: 95  KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 154

Query: 186 DE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK 244
              G VYFTD ST Y  R   Q++ +++ TGR++KYDP+TK+TT+LL+ L  P G  +S 
Sbjct: 155 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 214

Query: 245 DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLY 304
           D SF +  E    ++ KYWL G K G  E    +P  P N++ N  G FWV         
Sbjct: 215 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 264

Query: 305 SHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA 364
                              S+      ++ GR+    +K+   G IL+V+        + 
Sbjct: 265 -------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEH 305

Query: 365 ISEVEEKDGKLWMGSVLMPFVA--VYD 389
             +++E DG L++G++    V   VYD
Sbjct: 306 FEQIQEHDGLLYIGTLFHGSVGILVYD 332

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia mannii (taxid: 4062)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
255545359	391	strictosidine synthase, putative [Ricinu	1.0	1.0	0.808	0.0
224054234	391	predicted protein [Populus trichocarpa]	1.0	1.0	0.792	0.0
225436102	391	PREDICTED: adipocyte plasma membrane-ass	0.997	0.997	0.774	0.0
225436104	381	PREDICTED: adipocyte plasma membrane-ass	0.971	0.997	0.751	1e-173
18390900	390	strictosidine synthase-like 3 [Arabidops	0.982	0.984	0.729	1e-172
449530714	402	PREDICTED: adipocyte plasma membrane-ass	0.971	0.945	0.739	1e-171
449439172	402	PREDICTED: adipocyte plasma membrane-ass	0.971	0.945	0.739	1e-171
297849156	390	strictosidine synthase family protein [A	0.974	0.976	0.727	1e-171
356517675	441	PREDICTED: adipocyte plasma membrane-ass	0.992	0.879	0.704	1e-168
357453305	393	Adipocyte plasma membrane-associated pro	1.0	0.994	0.712	1e-168

>gi|255545359|ref|XP_002513740.1| strictosidine synthase, putative [Ricinus communis] gi|223547191|gb|EEF48687.1| strictosidine synthase, putative [Ricinus communis]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/391 (80%), Positives = 353/391 (90%)

Query: 1   MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNS 60
           MTPRG L  +I LLA+YCG+DP KHSAISEFPDF + KVD+P WSL+P  KD+ NLLQ S
Sbjct: 1   MTPRGILAGLIPLLALYCGIDPFKHSAISEFPDFKAFKVDLPDWSLVPNEKDNDNLLQRS 60

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           EIKFLNQIQGPESMAFDPLGRGPYTG+ADGRI+FWDGLKW DFA+TS NRSE+C  KP  
Sbjct: 61  EIKFLNQIQGPESMAFDPLGRGPYTGIADGRIVFWDGLKWIDFAYTSPNRSEICERKPSP 120

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTN 180
            SYLKNEHICGRPLGLRF+KKTGDLYIADAYFGLMKVGPEGGLATSLATEAEG+ L FTN
Sbjct: 121 LSYLKNEHICGRPLGLRFNKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGIKLGFTN 180

Query: 181 DLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGL 240
           DLDIDDEGN+YFTDSST YQRRNFMQLVFS+E +GRVLKY+PTTK TTVL+RN+QFPNG+
Sbjct: 181 DLDIDDEGNIYFTDSSTQYQRRNFMQLVFSSEHSGRVLKYNPTTKGTTVLVRNVQFPNGV 240

Query: 241 SLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR 300
           SLSKD +FFVFCEGS+GRL KYWL GEKAG  E  AILPG+PDNVRTNE+G FWVA+HCR
Sbjct: 241 SLSKDGTFFVFCEGSMGRLSKYWLKGEKAGTTEVLAILPGFPDNVRTNEEGNFWVAVHCR 300

Query: 301 RSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGK 360
           R+ YS++ ALYPK+R FLLKLPISAK HYL H+GGRLHA+AVKYSPEGK+LQ+LEDS+GK
Sbjct: 301 RTYYSYICALYPKLRTFLLKLPISAKIHYLFHIGGRLHAVAVKYSPEGKLLQILEDSQGK 360

Query: 361 VVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 391
           VVKAISEVEE+DGKLWMGSVLMPFV VY+L+
Sbjct: 361 VVKAISEVEERDGKLWMGSVLMPFVGVYNLA 391

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054234|ref|XP_002298158.1| predicted protein [Populus trichocarpa] gi|222845416|gb|EEE82963.1| predicted protein [Populus trichocarpa]

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/391 (79%), Positives = 347/391 (88%)

Query: 1   MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNS 60
           MTP G L  + LLL +YCG+DP K SAIS FPDF S+KV+MPPWS++P  KD++NLLQ S
Sbjct: 1   MTPTGILAGLFLLLTLYCGIDPWKQSAISGFPDFKSYKVEMPPWSILPKEKDEENLLQRS 60

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILF+DG KWTDFA+TS+NRSE+CNP+P  
Sbjct: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFYDGQKWTDFAYTSSNRSEICNPQPSP 120

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTN 180
            SYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL+ EAEG+PLRFTN
Sbjct: 121 LSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLSNEAEGIPLRFTN 180

Query: 181 DLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGL 240
           DLDIDDEGN+YFTDSST YQRRNFMQLVFS E++GRVLKY+PTTK+TTVL+RNLQFPNG+
Sbjct: 181 DLDIDDEGNIYFTDSSTTYQRRNFMQLVFSGENSGRVLKYNPTTKETTVLVRNLQFPNGV 240

Query: 241 SLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR 300
           SLSKD SFFVFCEGS+GRL KYWL GEKAG  E  AILPG+PDNVRTNE+G FWVAIHCR
Sbjct: 241 SLSKDGSFFVFCEGSIGRLRKYWLKGEKAGTSEVLAILPGFPDNVRTNEEGNFWVAIHCR 300

Query: 301 RSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGK 360
           RS Y+H+ A YP +R FLLKLPI  K  YL+ +GG  H + VKYSPEGK+LQ+LEDS+GK
Sbjct: 301 RSFYTHINAQYPNLRTFLLKLPIPMKIQYLLQIGGWPHGLVVKYSPEGKLLQILEDSQGK 360

Query: 361 VVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 391
           VVKAISEVEEKDGKLWMGSVLM FV VY+L+
Sbjct: 361 VVKAISEVEEKDGKLWMGSVLMRFVGVYNLA 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436102|ref|XP_002278088.1| PREDICTED: adipocyte plasma membrane-associated protein-like isoform 1 [Vitis vinifera]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/390 (77%), Positives = 348/390 (89%)

Query: 1   MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNS 60
           MTP G L  + LLLA+YCG+DPLKHS+I+ FP+F +H V+MPPWS +P  KDD+NLLQ +
Sbjct: 1   MTPGGLLAALFLLLALYCGIDPLKHSSIANFPEFEAHLVEMPPWSEVPAAKDDRNLLQKA 60

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           EIKFLNQ+QGPES+AFDPLGRGPYTGVADGRILFW+G  W+DFA+TS NRSELC+PKP  
Sbjct: 61  EIKFLNQVQGPESVAFDPLGRGPYTGVADGRILFWNGEAWSDFAYTSPNRSELCDPKPSP 120

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTN 180
            SYLKNEHICGRPLGLRF+K+TGDLYIAD+Y GLMKVGPEGGLATSL TEA+GVPLRFTN
Sbjct: 121 LSYLKNEHICGRPLGLRFNKRTGDLYIADSYLGLMKVGPEGGLATSLVTEADGVPLRFTN 180

Query: 181 DLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGL 240
           DLDIDD GN+YFTDSS+ YQRRNFMQLVFS+ED+GR+LKYDP TK+TTVLLR LQFPNG+
Sbjct: 181 DLDIDDAGNIYFTDSSSKYQRRNFMQLVFSSEDSGRLLKYDPLTKETTVLLRGLQFPNGV 240

Query: 241 SLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR 300
           SLSKD SF V CEGS GRL KYWL G+KAG  E FAILPGYPDNVRTNEKGEFWVAIHCR
Sbjct: 241 SLSKDGSFLVLCEGSPGRLVKYWLKGDKAGTSEVFAILPGYPDNVRTNEKGEFWVAIHCR 300

Query: 301 RSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGK 360
           R++YS+L  LYPK+R FLLKLPI  +  YL+H+GGRLHA+ VKYSPEGK++++LEDS+GK
Sbjct: 301 RTMYSYLCGLYPKLRMFLLKLPIPTRYQYLLHIGGRLHAVVVKYSPEGKLVKILEDSEGK 360

Query: 361 VVKAISEVEEKDGKLWMGSVLMPFVAVYDL 390
           VV+A+SEVEE++GKLWMGSVLMPFVAVY L
Sbjct: 361 VVRAVSEVEEREGKLWMGSVLMPFVAVYQL 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436104|ref|XP_002278122.1| PREDICTED: adipocyte plasma membrane-associated protein-like isoform 3 [Vitis vinifera]

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 293/390 (75%), Positives = 339/390 (86%), Gaps = 10/390 (2%)

Query: 1   MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNS 60
           MTP G L  + LLLA+YCG+DPLKHS+I+ FP+F +H V+MPPWS +P  KDD+NLLQ +
Sbjct: 1   MTPGGLLAALFLLLALYCGIDPLKHSSIANFPEFEAHLVEMPPWSEVPAAKDDRNLLQKA 60

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           EIKFLNQ+QGPES+AFDPLGRGPYTGVADGRILFW+G  W+DFA+TS NR +        
Sbjct: 61  EIKFLNQVQGPESVAFDPLGRGPYTGVADGRILFWNGEAWSDFAYTSPNRGDC------- 113

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTN 180
              LKNEHICGRPLGLRF+K+TGDLYIAD+Y GLMKVGPEGGLATSL TEA+GVPLRFTN
Sbjct: 114 ---LKNEHICGRPLGLRFNKRTGDLYIADSYLGLMKVGPEGGLATSLVTEADGVPLRFTN 170

Query: 181 DLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGL 240
           DLDIDD GN+YFTDSS+ YQRRNFMQLVFS+ED+GR+LKYDP TK+TTVLLR LQFPNG+
Sbjct: 171 DLDIDDAGNIYFTDSSSKYQRRNFMQLVFSSEDSGRLLKYDPLTKETTVLLRGLQFPNGV 230

Query: 241 SLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR 300
           SLSKD SF V CEGS GRL KYWL G+KAG  E FAILPGYPDNVRTNEKGEFWVAIHCR
Sbjct: 231 SLSKDGSFLVLCEGSPGRLVKYWLKGDKAGTSEVFAILPGYPDNVRTNEKGEFWVAIHCR 290

Query: 301 RSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGK 360
           R++YS+L  LYPK+R FLLKLPI  +  YL+H+GGRLHA+ VKYSPEGK++++LEDS+GK
Sbjct: 291 RTMYSYLCGLYPKLRMFLLKLPIPTRYQYLLHIGGRLHAVVVKYSPEGKLVKILEDSEGK 350

Query: 361 VVKAISEVEEKDGKLWMGSVLMPFVAVYDL 390
           VV+A+SEVEE++GKLWMGSVLMPFVAVY L
Sbjct: 351 VVRAVSEVEEREGKLWMGSVLMPFVAVYQL 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390900|ref|NP_563818.1| strictosidine synthase-like 3 [Arabidopsis thaliana] gi|16930481|gb|AAL31926.1|AF419594_1 At1g08470/T27G7_9 [Arabidopsis thaliana] gi|17381182|gb|AAL36403.1| unknown protein [Arabidopsis thaliana] gi|21436203|gb|AAM51389.1| unknown protein [Arabidopsis thaliana] gi|332190175|gb|AEE28296.1| strictosidine synthase-like 3 [Arabidopsis thaliana]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 280/384 (72%), Positives = 331/384 (86%)

Query: 7   LGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLN 66
           L  + L+ A+YC +DP  HS+IS+FPDF ++K+DMPP S +P  +D +NLLQNSEI+FLN
Sbjct: 6   LAKIFLVFAIYCAIDPFSHSSISKFPDFKTYKIDMPPLSSLPKERDRQNLLQNSEIRFLN 65

Query: 67  QIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKN 126
           ++QGPES+AFDP GRGPYTGVADGRILFW+G +WTDFA+TSNNRSELC+PKP    YLK+
Sbjct: 66  EVQGPESIAFDPQGRGPYTGVADGRILFWNGTRWTDFAYTSNNRSELCDPKPSLLDYLKD 125

Query: 127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD 186
           E ICGRPLGLRFDKK GDLYIADAY G+MKVGPEGGLATS+  EA+GVPLRFTNDLDIDD
Sbjct: 126 EDICGRPLGLRFDKKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDD 185

Query: 187 EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDK 246
           EGNVYFTDSS+ +QRR FM L+ S ED+GRVLKY+P TK+TT L+RNLQFPNGLSL KD 
Sbjct: 186 EGNVYFTDSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFPNGLSLGKDG 245

Query: 247 SFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSH 306
           SFF+FCEGS+GRL KYWL GEKAG  E  A+L G+PDN+RTN+ G+FWVA+HC R++++H
Sbjct: 246 SFFIFCEGSIGRLRKYWLKGEKAGTSEVVALLHGFPDNIRTNKDGDFWVAVHCHRNIFTH 305

Query: 307 LMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAIS 366
           LMA YP++R F LKLPIS K  YL+ VGG  HA+AVKYS EGK+L+VLEDSKGKVVKA+S
Sbjct: 306 LMAHYPRVRKFFLKLPISVKFQYLLQVGGWPHAVAVKYSEEGKVLKVLEDSKGKVVKAVS 365

Query: 367 EVEEKDGKLWMGSVLMPFVAVYDL 390
           EVEEKDGKLWMGSVLM F+AVYDL
Sbjct: 366 EVEEKDGKLWMGSVLMSFIAVYDL 389

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530714|ref|XP_004172338.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Cucumis sativus]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 281/380 (73%), Positives = 329/380 (86%)

Query: 11  ILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQG 70
             LLA+YC +DP KHSAI+ FPDF ++ V++P WS IPT +D +NLLQ S I F +Q+QG
Sbjct: 22  FFLLALYCAIDPFKHSAIANFPDFETYYVELPSWSQIPTERDTENLLQKSTIMFKDQVQG 81

Query: 71  PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHIC 130
           PES+AFD LGRGPYTGVADGR+LFW+G  WTDFA+TS NRSE+C+PKP    Y KNEHIC
Sbjct: 82  PESVAFDSLGRGPYTGVADGRVLFWNGESWTDFAYTSPNRSEICDPKPSIFGYAKNEHIC 141

Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL+TEAEGVP +F NDLD+DDEGNV
Sbjct: 142 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLSTEAEGVPFKFINDLDLDDEGNV 201

Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFV 250
           YFTDSST Y+RRNF+Q+VFSAE+TGR+LKY+  T +TTVL+R+L FPNG+SLSKD SFF+
Sbjct: 202 YFTDSSTKYERRNFIQVVFSAENTGRLLKYNAATGETTVLVRDLHFPNGVSLSKDGSFFL 261

Query: 251 FCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMAL 310
           FCEG  GRL KYWL GEKAG  E FAILPG+PDNVRTN+KG+FWVA+H R S  +HL A 
Sbjct: 262 FCEGGKGRLRKYWLKGEKAGTNELFAILPGFPDNVRTNDKGDFWVAVHSRHSTLAHLEAK 321

Query: 311 YPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEE 370
           YPK+R  LLKLPISAK  +L+HVGGR HA+AVKYSPEGK+LQ+LED++GKVVKA+SEVEE
Sbjct: 322 YPKLRKILLKLPISAKIQFLLHVGGRPHAVAVKYSPEGKLLQILEDTQGKVVKAVSEVEE 381

Query: 371 KDGKLWMGSVLMPFVAVYDL 390
           KDGKLW+GSVLM F+AVY+L
Sbjct: 382 KDGKLWIGSVLMSFIAVYEL 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439172|ref|XP_004137361.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Cucumis sativus]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 281/380 (73%), Positives = 329/380 (86%)

Query: 11  ILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQG 70
             LLA+YC +DP KHSAI+ FPDF ++ V++P WS IPT +D +NLLQ S I F +Q+QG
Sbjct: 22  FFLLALYCAIDPFKHSAIANFPDFETYYVELPSWSQIPTERDTENLLQKSTIMFKDQVQG 81

Query: 71  PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHIC 130
           PES+AFD LGRGPYTGVADGR+LFW+G  WTDFA+TS NRSE+C+PKP    Y KNEHIC
Sbjct: 82  PESVAFDSLGRGPYTGVADGRVLFWNGESWTDFAYTSPNRSEICDPKPSIFGYAKNEHIC 141

Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL+TEAEGVP +F NDLD+DDEGNV
Sbjct: 142 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLSTEAEGVPFKFINDLDLDDEGNV 201

Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFV 250
           YFTDSST Y+RRNF+Q+VFSAE+TGR+LKY+  T +TTVL+R+L FPNG+SLSKD SFF+
Sbjct: 202 YFTDSSTKYERRNFIQVVFSAENTGRLLKYNAATGETTVLVRDLHFPNGVSLSKDGSFFL 261

Query: 251 FCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMAL 310
           FCEG  GRL KYWL GEKAG  E FAILPG+PDNVRTN+KG+FWVA+H R S  +HL A 
Sbjct: 262 FCEGGKGRLRKYWLKGEKAGTNELFAILPGFPDNVRTNDKGDFWVAVHSRHSTLAHLEAE 321

Query: 311 YPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEE 370
           YPK+R  LLKLPISAK  +L+HVGGR HA+AVKYSPEGK+LQ+LED++GKVVKA+SEVEE
Sbjct: 322 YPKLRKILLKLPISAKIQFLLHVGGRPHAVAVKYSPEGKLLQILEDTQGKVVKAVSEVEE 381

Query: 371 KDGKLWMGSVLMPFVAVYDL 390
           KDGKLW+GSVLM F+AVY+L
Sbjct: 382 KDGKLWIGSVLMSFIAVYEL 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849156|ref|XP_002892459.1| strictosidine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338301|gb|EFH68718.1| strictosidine synthase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 277/381 (72%), Positives = 330/381 (86%)

Query: 10  VILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQ 69
           + L+ A+YC LDP  HS+IS+FPDF ++K+DMPP S +P  +D +NLLQNSEI+FLN++Q
Sbjct: 9   ISLVFAIYCALDPFSHSSISKFPDFKTYKIDMPPLSSLPKERDRENLLQNSEIRFLNEVQ 68

Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHI 129
           GPES+AFDP GRGPYTGVADGRILFW+G +W DFA+TSNNRSELC+PKP    YLK+E I
Sbjct: 69  GPESIAFDPQGRGPYTGVADGRILFWNGTRWIDFAYTSNNRSELCDPKPSLLDYLKDEDI 128

Query: 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN 189
           CGRPLGLRFDKKTGDLYIADAY G+MKVGPEGGLATS+  EA+GVPLRFTNDLDIDD+GN
Sbjct: 129 CGRPLGLRFDKKTGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDDQGN 188

Query: 190 VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFF 249
           VYFTDSS+ +QRR FM L+ S ED+GRVLKY+P TK+TT L+RNLQFPNGLSL KD SFF
Sbjct: 189 VYFTDSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFPNGLSLGKDGSFF 248

Query: 250 VFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMA 309
           +FCEGS+GRL KYWL GEKAG  E  A+L G+PDN+RTN+ G+FWVA+HC R++++H+MA
Sbjct: 249 IFCEGSIGRLRKYWLKGEKAGTSEVVALLHGFPDNIRTNKDGDFWVAVHCHRNIFTHVMA 308

Query: 310 LYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVE 369
            +P++R F LKLPIS K  YL+ VGG  HA+AVKYS EGK+L+VLEDSKGKVVKA+SEVE
Sbjct: 309 HHPRVRKFFLKLPISVKFQYLLQVGGWPHAVAVKYSEEGKVLKVLEDSKGKVVKAVSEVE 368

Query: 370 EKDGKLWMGSVLMPFVAVYDL 390
           EKDGKLWMGSVLM F+AVYDL
Sbjct: 369 EKDGKLWMGSVLMSFIAVYDL 389

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517675|ref|XP_003527512.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Glycine max]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 284/403 (70%), Positives = 328/403 (81%), Gaps = 15/403 (3%)

Query: 3   PRGFLGLVILLLAM-------------YCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPT 49
           P  FL  V+L  AM             YCGLDP +HS I+ FPDF   +VDMP WS +PT
Sbjct: 38  PSSFLFPVLLCAAMGRGLGVVLVLLAVYCGLDPFQHSPIAHFPDFEVKRVDMPAWSEVPT 97

Query: 50  VKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNN 109
            +D  NLLQ SEIKF NQ+QGPES+AFDPLGRGPYTG+ADG I+FW+G  W  FA+TS N
Sbjct: 98  DQDKHNLLQKSEIKFANQVQGPESIAFDPLGRGPYTGLADGTIVFWNGHSWLHFAYTSPN 157

Query: 110 RSELCNPKPIAT--SYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL 167
           RSE+CNP   AT  SY+KNEHICGRPLGLRFDKKTGDLYIADAYFGL+KVGPEGGLATSL
Sbjct: 158 RSEICNPIASATPFSYVKNEHICGRPLGLRFDKKTGDLYIADAYFGLLKVGPEGGLATSL 217

Query: 168 ATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT 227
            TEAEG+PLRFTND+D+D EGNVYFT+SS  Y RRNF+QLVFS +D+GRVLKY+  TK+T
Sbjct: 218 VTEAEGIPLRFTNDVDVDTEGNVYFTESSALYPRRNFLQLVFSGDDSGRVLKYNLATKET 277

Query: 228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT 287
           TVL+RN+QFPNG+SLSKD SFFVFCEG VGRL KYWL GEKAG  E  AILPGYPDNVR 
Sbjct: 278 TVLVRNIQFPNGISLSKDGSFFVFCEGVVGRLRKYWLKGEKAGTSEILAILPGYPDNVRV 337

Query: 288 NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPE 347
           NE G+FWVA+H RR +Y++   +YPK+R  +LKLPI  K HYL+ +GGR HA  ++YSPE
Sbjct: 338 NEDGDFWVALHSRRYMYAYYNGIYPKMRKIILKLPIPIKIHYLLQIGGRQHAAVIRYSPE 397

Query: 348 GKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 390
           GK+LQ+LEDS+GKVVKA+SEVEEKDGKLWMGSVLMPFVAVY+L
Sbjct: 398 GKLLQILEDSEGKVVKAVSEVEEKDGKLWMGSVLMPFVAVYNL 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453305|ref|XP_003596929.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355485977|gb|AES67180.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 280/393 (71%), Positives = 328/393 (83%), Gaps = 2/393 (0%)

Query: 1   MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNS 60
           MT    L +VILL A+YCGLDP K S I  FPDF  HK+++P WS +P   D  NLL  S
Sbjct: 1   MTLTRGLAIVILLFALYCGLDPFKQSPIQGFPDFEVHKINLPSWSEVPLDHDKDNLLLKS 60

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           E+ F+NQ+QGPES+AFD  GRGPYTGVADGRILFW+GL W DFA+TS NRSELCN K  A
Sbjct: 61  ELMFVNQVQGPESIAFDSHGRGPYTGVADGRILFWNGLSWIDFAYTSPNRSELCNLKASA 120

Query: 121 T--SYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRF 178
           T  SY++ E ICGRPLGLRFDKKTGDLYIADAYFGLMKVGP+GG ATSLATEAEGVP RF
Sbjct: 121 TPLSYVETEDICGRPLGLRFDKKTGDLYIADAYFGLMKVGPQGGFATSLATEAEGVPFRF 180

Query: 179 TNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPN 238
           TND+DID EGNVYFTDSST YQRRNF+QL+ S +++GRVLKY+  TK+TTVL+RN+QFPN
Sbjct: 181 TNDVDIDTEGNVYFTDSSTKYQRRNFIQLILSGDNSGRVLKYNSATKETTVLVRNIQFPN 240

Query: 239 GLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH 298
           G+SLSKD SFFVF EG +GRL KYWL G+KAG LE  AILPG+ DNVR NE G+FWVAIH
Sbjct: 241 GISLSKDGSFFVFSEGVIGRLCKYWLKGDKAGTLEILAILPGFADNVRVNENGDFWVAIH 300

Query: 299 CRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSK 358
           CRR +YS++ ALYPKIR  +LKLPI  +  YL+H+GG++HA  VKYSP+GK+LQ+LED++
Sbjct: 301 CRRYMYSYINALYPKIRKAILKLPIPTRIQYLLHIGGKMHAAVVKYSPDGKLLQILEDNE 360

Query: 359 GKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 391
           GKVVKA+SEVEEKDGKLW+GSVLMPF+AVY L+
Sbjct: 361 GKVVKAVSEVEEKDGKLWIGSVLMPFIAVYHLT 393

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.982	0.984	0.729	7.5e-160
TAIR|locus:504956439	395	AT5G22020 [Arabidopsis thalian	0.969	0.959	0.720	1.2e-154
TAIR|locus:2080575	374	AT3G57030 [Arabidopsis thalian	0.864	0.903	0.540	1.2e-97
TAIR|locus:2097488	403	LAP3 "LESS ADHERENT POLLEN 3"	0.895	0.868	0.467	1.8e-80
TAIR|locus:2080660	376	AT3G57010 [Arabidopsis thalian	0.861	0.896	0.470	2.6e-79
TAIR|locus:2080565	370	AT3G57020 [Arabidopsis thalian	0.849	0.897	0.454	5e-76
TAIR|locus:2040297	394	SSL1 "strictosidine synthase-l	0.777	0.771	0.466	5.9e-73
TAIR|locus:2040312	376	SSL2 "strictosidine synthase-l	0.803	0.835	0.447	9.4e-66
TAIR|locus:2031496	325	AT1G74010 [Arabidopsis thalian	0.567	0.683	0.424	3.3e-47
TAIR|locus:2031511	329	SS3 "strictosidine synthase 3"	0.570	0.677	0.406	1.1e-46

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1557 (553.2 bits), Expect = 7.5e-160, P = 7.5e-160
 Identities = 280/384 (72%), Positives = 331/384 (86%)

Query:     7 LGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLN 66
             L  + L+ A+YC +DP  HS+IS+FPDF ++K+DMPP S +P  +D +NLLQNSEI+FLN
Sbjct:     6 LAKIFLVFAIYCAIDPFSHSSISKFPDFKTYKIDMPPLSSLPKERDRQNLLQNSEIRFLN 65

Query:    67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKN 126
             ++QGPES+AFDP GRGPYTGVADGRILFW+G +WTDFA+TSNNRSELC+PKP    YLK+
Sbjct:    66 EVQGPESIAFDPQGRGPYTGVADGRILFWNGTRWTDFAYTSNNRSELCDPKPSLLDYLKD 125

Query:   127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD 186
             E ICGRPLGLRFDKK GDLYIADAY G+MKVGPEGGLATS+  EA+GVPLRFTNDLDIDD
Sbjct:   126 EDICGRPLGLRFDKKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDD 185

Query:   187 EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDK 246
             EGNVYFTDSS+ +QRR FM L+ S ED+GRVLKY+P TK+TT L+RNLQFPNGLSL KD 
Sbjct:   186 EGNVYFTDSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFPNGLSLGKDG 245

Query:   247 SFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSH 306
             SFF+FCEGS+GRL KYWL GEKAG  E  A+L G+PDN+RTN+ G+FWVA+HC R++++H
Sbjct:   246 SFFIFCEGSIGRLRKYWLKGEKAGTSEVVALLHGFPDNIRTNKDGDFWVAVHCHRNIFTH 305

Query:   307 LMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAIS 366
             LMA YP++R F LKLPIS K  YL+ VGG  HA+AVKYS EGK+L+VLEDSKGKVVKA+S
Sbjct:   306 LMAHYPRVRKFFLKLPISVKFQYLLQVGGWPHAVAVKYSEEGKVLKVLEDSKGKVVKAVS 365

Query:   367 EVEEKDGKLWMGSVLMPFVAVYDL 390
             EVEEKDGKLWMGSVLM F+AVYDL
Sbjct:   366 EVEEKDGKLWMGSVLMSFIAVYDL 389

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:504956439 AT5G22020 [Arabidopsis thaliana (taxid:3702)]

 Score = 1508 (535.9 bits), Expect = 1.2e-154, P = 1.2e-154
 Identities = 273/379 (72%), Positives = 322/379 (84%)

Query:    12 LLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGP 71
             L LA+YC +DP  H AIS+FP+FVSH+V  P    +P  +D +N LQ S+I F NQIQGP
Sbjct:    17 LSLALYCSIDPFHHCAISDFPNFVSHEVISPRPDEVPWERDSQNSLQKSKILFFNQIQGP 76

Query:    72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICG 131
             ES+AFD LGRGPYTGVADGR+LFWDG KW DFA+TS+NRSE+C+PKP A SYL+NEHICG
Sbjct:    77 ESVAFDSLGRGPYTGVADGRVLFWDGEKWIDFAYTSSNRSEICDPKPSALSYLRNEHICG 136

Query:   132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVY 191
             RPLGLRFDK+TGDLYIADAY GL+KVGPEGGLAT L TEAEGVPL FTNDLDI D+G VY
Sbjct:   137 RPLGLRFDKRTGDLYIADAYMGLLKVGPEGGLATPLVTEAEGVPLGFTNDLDIADDGTVY 196

Query:   192 FTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVF 251
             FTDSS +YQRRNF+QLVFS ++TGRVLKYDP  K+  VL+ NLQFPNG+S+S+D SFFVF
Sbjct:   197 FTDSSISYQRRNFLQLVFSGDNTGRVLKYDPVAKKAVVLVSNLQFPNGVSISRDGSFFVF 256

Query:   252 CEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALY 311
             CEG +G L +YWL GEKAG  + FA LPG+PDNVRTN+KGEFWVA+HCRR+ YS+LMA Y
Sbjct:   257 CEGDIGSLRRYWLKGEKAGTTDVFAYLPGHPDNVRTNQKGEFWVALHCRRNYYSYLMARY 316

Query:   312 PKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEK 371
             PK+R F+L+LPI+A+THY   +G R H + VKYSPEGK++ VLEDS+GKVV+++SEVEEK
Sbjct:   317 PKLRMFILRLPITARTHYSFQIGLRPHGLVVKYSPEGKLMHVLEDSEGKVVRSVSEVEEK 376

Query:   372 DGKLWMGSVLMPFVAVYDL 390
             DGKLWMGSVLM FVAVYDL
Sbjct:   377 DGKLWMGSVLMNFVAVYDL 395

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2080575 AT3G57030 [Arabidopsis thaliana (taxid:3702)]

 Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
 Identities = 187/346 (54%), Positives = 245/346 (70%)

Query:    48 PTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDG--LKWTDFAF 105
             P +   +++  ++++  L    GPES+AFDP G GPY GV+DGRIL W G  L W+DFA 
Sbjct:    34 PEISGSRDVFPSAKVVNLTGASGPESIAFDPAGEGPYVGVSDGRILKWRGEPLGWSDFAH 93

Query:   106 TSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLAT 165
             TS+NR E C  +P A      EH+CGRPLGLRFDKKTGDLYIADAYFGL+ VGP GGLA 
Sbjct:    94 TSSNRQE-C-ARPFAPEL---EHVCGRPLGLRFDKKTGDLYIADAYFGLLVVGPAGGLAK 148

Query:   166 SLATEAEGVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT 224
              L TEAEG P RFTNDLDID++ +V YFTD+S  +QRR F+  V + + TGR +KYD ++
Sbjct:   149 PLVTEAEGQPFRFTNDLDIDEQEDVIYFTDTSARFQRRQFLAAVLNVDKTGRFIKYDRSS 208

Query:   225 KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN 284
             K+ TVLL+ L F NG++LSKD+SF +  E +  ++ + WL G  AG  + FA LPG+PDN
Sbjct:   209 KKATVLLQGLAFANGVALSKDRSFVLVVETTTCKILRLWLSGPNAGTHQVFAELPGFPDN 268

Query:   285 VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKY 344
             +R N  GEFWVA+H ++ L++ L       R  +L+LPIS +  + +  GG  HA A+K 
Sbjct:   269 IRRNSNGEFWVALHSKKGLFAKLSLTQTWFRDLVLRLPISPQRLHSLFTGGIPHATAIKL 328

Query:   345 SPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 390
             S  GK+L+VLED +GK ++ ISEVEEKDGKLW+GSVL+PF+ VYDL
Sbjct:   329 SESGKVLEVLEDKEGKTLRFISEVEEKDGKLWIGSVLVPFLGVYDL 374

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 170/364 (46%), Positives = 234/364 (64%)

Query:    10 VILLLAMYCGLDPLKHSAIS--EFPDFVSHKVDMPPWSLI--PTVKDDKNLLQN-SEIKF 64
             +I L  ++  +DP   S I   EF   V H+V   P+  +     +D+ + L N  +++F
Sbjct:    22 IIALSVLFIAIDPFHMSPIGGREFKP-VKHEV--APYKEVMGSWPRDNLSRLGNHGKLEF 78

Query:    65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDG--LKWTDFAF-TSNNRSELCNPKPIAT 121
             ++Q+ GPES+ FD LGRGPYTG+ADGR++ W G  + W  F+  TS    E C     +T
Sbjct:    79 VDQVFGPESLEFDSLGRGPYTGLADGRVVRWMGEAIGWETFSVVTSKWSEEACVRGVDST 138

Query:   122 S--YLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFT 179
             +    K+E +CGRPLGLRF K+TG+LYIADAY+GL+ VGPEGG+AT LAT  EG P+ F 
Sbjct:   139 TNKQWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEGGIATPLATHVEGKPILFA 198

Query:   180 NDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNG 239
             NDLDI   G+++FTD+S  Y R N   ++   E TGR+L+YDP TK T ++L  L FPNG
Sbjct:   199 NDLDIHRNGSIFFTDTSKRYDRANHFFILLEGESTGRLLRYDPPTKTTHIVLEGLAFPNG 258

Query:   240 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHC 299
             + LSKD+SF +F E +  RL KYWL G K G +E  A LPG+PDNVR NE+G+FWVAI C
Sbjct:   259 IQLSKDQSFLLFTETTNCRLVKYWLEGPKMGEVEVVADLPGFPDNVRINEEGQFWVAIDC 318

Query:   300 RRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKG 359
              R+    ++   P IR    +LPI  K      +G R++ +  ++  EGK+L+VLED +G
Sbjct:   319 CRTPAQEVLTNNPWIRSIYFRLPIPMKL-LAKTMGMRMYTVISRFDEEGKVLEVLEDRQG 377

Query:   360 KVVK 363
             KV+K
Sbjct:   378 KVMK 381

GO:0005739 "mitochondrion" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2080660 AT3G57010 [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 168/357 (47%), Positives = 226/357 (63%)

Query:    44 WSLI--P-TVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDG--L 98
             WS I  P  +K  K++LQ+++   L  + GPES+ FDP G GPY GV DGRIL W G  L
Sbjct:    26 WSSIIGPDNLKGTKHVLQDAKTIPL-PVDGPESLEFDPQGEGPYVGVTDGRILKWRGEEL 84

Query:    99 KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVG 158
              W DFA+TS +R   C+   +  S       CGRPLGL F++KTGDLYI D YFG+MKVG
Sbjct:    85 GWVDFAYTSPHRDN-CSSHEVVPS-------CGRPLGLSFERKTGDLYICDGYFGVMKVG 136

Query:   159 PEGGLATSLATEAEGVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRNFMQLVFSAEDTGRV 217
             PEGGLA  +  EAEG  + F N  DID+E ++ YF DSS  Y  R+   +  S    GRV
Sbjct:   137 PEGGLAELVVDEAEGRKVMFANQGDIDEEEDIFYFNDSSDTYHFRDVFYVSLSGTKVGRV 196

Query:   218 LKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI 277
             ++YD   K+  V++  L+ PNGL+LSK+ SF V CE S    H+ W+ G K+G  E FA 
Sbjct:   197 IRYDMKKKEAKVIMDKLRLPNGLALSKNGSFVVTCESSTNICHRIWVKGPKSGTNEVFAT 256

Query:   278 LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKI-RHFLLKLPISAKTHYLIHVGGR 336
             LPG PDN+R    G+FWVA+HC+++L++  + ++  + R F+  + +    H++   GG+
Sbjct:   257 LPGSPDNIRRTPTGDFWVALHCKKNLFTRAVLIHTWVGRFFMNTMKMETVIHFMN--GGK 314

Query:   337 LHAMAVKYSPE-GKILQVLEDSKGKVVKAISEV-EEKDGKLWMGSVLMPFVAVYDLS 391
              H + VK S E G+IL++LEDS+GK VK +SE  E KDGKLW+GSV  P V V D S
Sbjct:   315 PHGIVVKLSGETGEILEILEDSEGKTVKYVSEAYETKDGKLWIGSVYWPAVWVLDTS 371

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2080565 AT3G57020 [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 160/352 (45%), Positives = 219/352 (62%)

Query:    46 LIP-TVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFW--DGLKWTD 102
             ++P  ++  KN+L  ++   +  + GPES+ FDP G GPY  V DGRIL W  D L W D
Sbjct:    29 IVPENLEGAKNVLTMAKTIPI-PVAGPESIEFDPKGEGPYAAVVDGRILKWRGDDLGWVD 87

Query:   103 FAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGG 162
             FA+TS +R      + + T        CGRPLGL F+KKTGDLYI D Y GLMKVGPEGG
Sbjct:    88 FAYTSPHRGNCSKTEVVPT--------CGRPLGLTFEKKTGDLYICDGYLGLMKVGPEGG 139

Query:   163 LATSLATEAEGVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD 221
             LA  +  EAEG  + F N  DID+E +V YF DSS  Y  R+   +  S E +GRV++YD
Sbjct:   140 LAELIVDEAEGRKVMFANQGDIDEEEDVFYFNDSSDKYHFRDVFFVAVSGERSGRVIRYD 199

Query:   222 PTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY 281
               TK+  V++ NL   NGL+L+KD+SF + CE     +H+YW+ G KAG  + FA +PGY
Sbjct:   200 KKTKEAKVIMDNLVCNNGLALNKDRSFLITCESGTSLVHRYWIKGPKAGTRDIFAKVPGY 259

Query:   282 PDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLI-HVGG-RLHA 339
             PDN+R    G+FW+ +HC+++L   L+  Y  +   + K   + K  Y+I  + G + H 
Sbjct:   260 PDNIRLTSTGDFWIGLHCKKNLIGRLIVKYKWLGKLVEK---TMKLEYVIAFINGFKPHG 316

Query:   340 MAVKYSPE-GKILQVLEDSKGKVVKAISEVEEKD-GKLWMGSVLMPFVAVYD 389
             +AVK S E G++L++LED +GK +K +SE  E+D GKLW GSV  P V V D
Sbjct:   317 VAVKISGETGEVLELLEDKEGKTMKYVSEAYERDDGKLWFGSVYWPAVWVLD 368

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2040297 SSL1 "strictosidine synthase-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 148/317 (46%), Positives = 202/317 (63%)

Query:    77 DPLGRGPYTGVADGRILFWDG--LKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL 134
             DP G GPY GV DGRIL W G  L W +FA++S +R   C+      S+ K E  CGRPL
Sbjct:    85 DPRGEGPYVGVTDGRILKWSGEDLGWIEFAYSSPHRKN-CS------SH-KVEPACGRPL 136

Query:   135 GLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFT 193
             GL F+KK+GDLY  D Y G+MKVGP+GGLA  +  E EG  + F N +DID+E + +YF 
Sbjct:   137 GLSFEKKSGDLYFCDGYLGVMKVGPKGGLAEKVVDEVEGQKVMFANQMDIDEEEDAIYFN 196

Query:   194 DSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE 253
             DSS  Y   +        E TGR ++YD  TK+  V++  L FPNGL+LS D SF + CE
Sbjct:   197 DSSDTYHFGDVFYAFLCGEKTGRAIRYDKKTKEAKVIMDRLHFPNGLALSIDGSFVLSCE 256

Query:   254 GSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPK 313
                  +H+YW  G  AG  + FA LPGY DN+R  E G+FWVA+H +++ +S L  ++P 
Sbjct:   257 VPTQLVHRYWAKGPNAGTRDIFAKLPGYADNIRRTETGDFWVALHSKKTPFSRLSMIHPW 316

Query:   314 IRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPE-GKILQVLEDSKGKVVKAISEVEEKD 372
             +  F +K  +  +    +  GG+ HA+AVK S + G+I+++LEDS+GK +K ISEV+E+D
Sbjct:   317 VGKFFIKT-LKMELLVFLFEGGKPHAVAVKLSGKTGEIMEILEDSEGKNMKFISEVQERD 375

Query:   373 GKLWMGSVLMPFVAVYD 389
             G+LW GSV +P V V D
Sbjct:   376 GRLWFGSVFLPSVWVLD 392

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

TAIR|locus:2040312 SSL2 "strictosidine synthase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 149/333 (44%), Positives = 201/333 (60%)

Query:    70 GPESMAFDPLGRGPYTGVADGRILFW--DGLKWTDFAFTSNNRSELCNPKPIATSYLKNE 127
             GPES  FD  G GPYTG++DGRI+ W  +  +W DFA T++ R     P      + + E
Sbjct:    51 GPESFVFDFFGDGPYTGLSDGRIVKWLANESRWIDFAVTTSAREGCEGPH----EHQRTE 106

Query:   128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE 187
             H+CGRPLGL FDK TGDLYIADAY GL+KVGP GG+AT +        LRFTN LDI+  
Sbjct:   107 HVCGRPLGLAFDKSTGDLYIADAYMGLLKVGPTGGVATQVLPRELNEALRFTNSLDINPR 166

Query:   188 -GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDK 246
              G VYFTDSS+ YQRRN++  + S + TGR++KYD  TKQ T LL NL F NG++LS++ 
Sbjct:   167 TGVVYFTDSSSVYQRRNYIGAMMSGDKTGRLMKYD-NTKQVTTLLSNLAFVNGVALSQNG 225

Query:   247 SFFVFCEGSVGRLHKYWLI-----GEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHCR 300
              + +  E ++ R+ +YWL       +   N E FA  LPG+PDN++ + +G FWV ++ +
Sbjct:   226 DYLLVVETAMCRILRYWLNETSVKSQSHDNYEIFAEGLPGFPDNIKRSPRGGFWVGLNTK 285

Query:   301 RSLYSHLMALYPKIRHFLLKLPIS-AKTHYL-IHVGGRLHAMAVKYSPE-GKILQVLEDS 357
              S  +        +    L LP+   K H +     G  + MAV+ S + G IL+V E  
Sbjct:   286 HSKLTKFAMSNAWLGRAALGLPVDWMKVHSVWARYNG--NGMAVRLSEDSGVILEVFEGK 343

Query:   358 KGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 390
                   +ISEVEEKDG LW+GSV  PF  +Y +
Sbjct:   344 NENKWISISEVEEKDGTLWVGSVNTPFAGMYKI 376

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2031496 AT1G74010 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 98/231 (42%), Positives = 131/231 (56%)

Query:    70 GPESMAFDPLGRGPYTGVADGRIL-FWDGLKWTDFA-FTSNNRSELCNPKPIATSYLKNE 127
             GPES AFD  G G YTGV+ G+IL +  G  + DFA  T ++ S  CN   + T++    
Sbjct:    37 GPESFAFDSTG-GFYTGVSGGKILKYVPGKGYVDFAQITDSSNSAWCNGA-LGTAFAGK- 93

Query:   128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE 187
               CGRP G+  + KTGDLY+ADA  GL  + P GGLAT LA   +G P +F + LD+D  
Sbjct:    94 --CGRPAGIALNSKTGDLYVADAPLGLHVISPAGGLATKLADSVDGKPFKFLDGLDVDPT 151

Query:   188 -GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDK 246
              G VYFT  S+ +  R  +  V   + +G++ KYDP TK  T L+  L    G ++S D 
Sbjct:   152 TGVVYFTSFSSKFGPREVLIAVGLKDASGKLFKYDPATKAVTELMEGLSGAAGCAVSSDG 211

Query:   247 SFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVR-TNEKGEFWVA 296
             SF +  E     + KYW+ G KAG +E F+ L   PDN+R     G FWVA
Sbjct:   212 SFVLVSEFIKSNIKKYWIKGPKAGTIEDFSSLVSNPDNIRRVGSTGNFWVA 262

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2031511 SS3 "strictosidine synthase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 94/231 (40%), Positives = 132/231 (57%)

Query:    70 GPESMAFDPLGRGPYTGVADGRILFWDGLK-WTDFA-FTSNNRSELCNPKPIATSYLKNE 127
             GPE+ AFD  G+G YTGV  G+IL +   K + DFA  T++++S LC+   + T+   N 
Sbjct:    40 GPEAFAFDSTGKGFYTGVTGGKILKYLPKKGYVDFAQITNSSKSSLCDGA-LGTT---NV 95

Query:   128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE 187
               CGRP G+ F+ KTGDLY+ADA  GL  +   GGLA  +A    G P  F + LD+D  
Sbjct:    96 EKCGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPT 155

Query:   188 -GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDK 246
              G VYFT  S+ +  R+ ++ V + + TG+  KYDP+ K  TVL+  L    G ++S D 
Sbjct:   156 TGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDG 215

Query:   247 SFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV-RTNEKGEFWVA 296
             SF +  + +   + +YW+ G KAG  E F      PDN+ R    G FWVA
Sbjct:   216 SFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSNPDNIKRIGSTGNFWVA 266

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7TP48	APMAP_RAT	No assigned EC number	0.3248	0.9309	0.9680	yes	no
Q9D7N9	APMAP_MOUSE	No assigned EC number	0.3248	0.9309	0.8771	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!
3rd Layer	4.3.3	0.766
3rd Layer	4.3.3.2	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.I.9767.1	hypothetical protein (385 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00280038	hypothetical protein (145 aa)			•						0.504
	eugene3.85300001	hypothetical protein (161 aa)			•						0.451

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	391
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	8e-34
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	2e-17
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	1e-09

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score =  120 bits (303), Expect = 8e-34
 Identities = 46/89 (51%), Positives = 63/89 (70%), Gaps = 1/89 (1%)

Query: 180 NDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPN 238
           N LD+D E G +YFTDSS+ Y RR  +  +   + TGR++KYDP+TK T VLL++L FPN
Sbjct: 1   NALDVDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPN 60

Query: 239 GLSLSKDKSFFVFCEGSVGRLHKYWLIGE 267
           G++LS D SF +FCE  + R+ KYW+ G 
Sbjct: 61  GIALSPDGSFVLFCETPMKRISKYWIKGP 89

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 41/141 (29%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 161 GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY 220
           GG  T LA   +G+PL   ND  +D +G ++F D         F         TG + + 
Sbjct: 95  GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMG------YFDLGKSEERPTGSLYRV 148

Query: 221 DPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK--AGNLEAFAIL 278
           DP      +L  +L  PNGL+ S D       +    R+H+Y L       G    F   
Sbjct: 149 DPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF 208

Query: 279 ---PGYPDNVRTNEKGEFWVA 296
              PG PD +  +  G  WVA
Sbjct: 209 DEEPGLPDGMAVDADGNLWVA 229

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 18/171 (10%)

Query: 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGNVY 191
           P+G    +  G L +A    GL  +  + G  T+LA  E +    RF ND  +D +G  +
Sbjct: 42  PVGAIALRDDGRLIVALKR-GLALLDLDTGELTTLADLEPDEPLNRF-NDGKVDPDGRFW 99

Query: 192 FTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVF 251
           F     +         +    + G + + DP  K    +L  +   NGL+ S D     F
Sbjct: 100 FGTMGFD---------IAPGGEPGALYRLDPDGK-VERVLDGITISNGLAWSPDGKTLYF 149

Query: 252 CEGSVGRLHKY--WLIGEKAGNLEAFAIL---PGYPDNVRTNEKGEFWVAI 297
            +    R+  +     G    N   FA      G PD +  + +G  WVA 
Sbjct: 150 ADSPTRRIWAFDYDADGGLISNRRVFADFKDGDGEPDGMAVDAEGNVWVAR 200

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.95
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.94
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.88
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.84
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.81
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.65
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.63
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.52
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.5
PRK11028	330	6-phosphogluconolactonase; Provisional	99.48
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.4
PRK11028	330	6-phosphogluconolactonase; Provisional	99.25
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.23
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.2
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.18
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.12
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.11
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.05
COG3391	381	Uncharacterized conserved protein [Function unknow	99.02
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.0
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.92
COG3391	381	Uncharacterized conserved protein [Function unknow	98.91
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.86
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.84
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.74
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.64
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.63
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.56
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.56
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.56
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.53
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.52
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.52
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.52
PRK04922	433	tolB translocation protein TolB; Provisional	98.47
PRK04792	448	tolB translocation protein TolB; Provisional	98.45
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.44
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.44
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	98.44
PRK05137	435	tolB translocation protein TolB; Provisional	98.43
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.38
PRK00178	430	tolB translocation protein TolB; Provisional	98.38
PRK03629	429	tolB translocation protein TolB; Provisional	98.38
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.38
PRK02889	427	tolB translocation protein TolB; Provisional	98.37
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.33
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.3
PRK05137	435	tolB translocation protein TolB; Provisional	98.29
PRK03629	429	tolB translocation protein TolB; Provisional	98.29
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.29
PRK04922	433	tolB translocation protein TolB; Provisional	98.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.27
PRK04043	419	tolB translocation protein TolB; Provisional	98.24
PRK02889	427	tolB translocation protein TolB; Provisional	98.22
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.22
PRK04792	448	tolB translocation protein TolB; Provisional	98.21
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.21
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.2
PRK02888	635	nitrous-oxide reductase; Validated	98.2
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.16
PRK01742	429	tolB translocation protein TolB; Provisional	98.15
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.14
KOG2055	514	consensus WD40 repeat protein [General function pr	98.13
KOG1273	405	consensus WD40 repeat protein [General function pr	98.13
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.12
KOG0286	343	consensus G-protein beta subunit [General function	98.09
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.07
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.07
PRK00178	430	tolB translocation protein TolB; Provisional	98.06
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.03
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.01
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.98
KOG0266	456	consensus WD40 repeat-containing protein [General	97.98
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.96
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.95
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.93
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.93
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.9
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.88
PTZ00421	493	coronin; Provisional	97.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.86
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.84
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.82
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.81
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.81
PRK04043	419	tolB translocation protein TolB; Provisional	97.79
PLN00181	793	protein SPA1-RELATED; Provisional	97.79
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.77
PRK01029	428	tolB translocation protein TolB; Provisional	97.76
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	97.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.74
KOG0316	307	consensus Conserved WD40 repeat-containing protein	97.73
KOG0266	456	consensus WD40 repeat-containing protein [General	97.71
PRK01742	429	tolB translocation protein TolB; Provisional	97.71
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.7
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.69
KOG2055	514	consensus WD40 repeat protein [General function pr	97.67
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.67
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.63
COG4946	668	Uncharacterized protein related to the periplasmic	97.63
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.62
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.6
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.58
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.58
COG3211	616	PhoX Predicted phosphatase [General function predi	97.51
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.5
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.43
KOG1274	933	consensus WD40 repeat protein [General function pr	97.43
KOG0289	506	consensus mRNA splicing factor [General function p	97.42
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	97.41
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.4
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.34
KOG1407	313	consensus WD40 repeat protein [Function unknown]	97.34
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.33
KOG1539	910	consensus WD repeat protein [General function pred	97.32
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.31
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.27
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.25
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.22
PLN00181	793	protein SPA1-RELATED; Provisional	97.19
KOG2048	691	consensus WD40 repeat protein [General function pr	97.15
PTZ00420	568	coronin; Provisional	97.14
KOG0283	712	consensus WD40 repeat-containing protein [Function	97.12
COG3211	616	PhoX Predicted phosphatase [General function predi	97.08
KOG2096	420	consensus WD40 repeat protein [General function pr	97.07
PTZ00421	493	coronin; Provisional	97.06
PRK02888	635	nitrous-oxide reductase; Validated	97.06
PRK01029	428	tolB translocation protein TolB; Provisional	97.05
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.05
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.04
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	96.98
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.98
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	96.96
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.95
KOG0286	343	consensus G-protein beta subunit [General function	96.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	96.9
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	96.87
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.74
KOG0293	519	consensus WD40 repeat-containing protein [Function	96.72
KOG1274	933	consensus WD40 repeat protein [General function pr	96.71
KOG0294	362	consensus WD40 repeat-containing protein [Function	96.64
KOG0275	508	consensus Conserved WD40 repeat-containing protein	96.62
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.62
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.61
KOG0289	506	consensus mRNA splicing factor [General function p	96.59
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	96.56
COG4946	668	Uncharacterized protein related to the periplasmic	96.56
KOG2139	445	consensus WD40 repeat protein [General function pr	96.46
KOG1539	910	consensus WD repeat protein [General function pred	96.43
KOG0771	398	consensus Prolactin regulatory element-binding pro	96.36
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.36
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.34
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.32
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.32
KOG0643	327	consensus Translation initiation factor 3, subunit	96.26
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	96.21
KOG0641	350	consensus WD40 repeat protein [General function pr	96.16
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.15
PRK13684	334	Ycf48-like protein; Provisional	96.1
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	96.06
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.04
KOG0640	430	consensus mRNA cleavage stimulating factor complex	95.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	95.97
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.97
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	95.95
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.9
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	95.89
KOG0639	705	consensus Transducin-like enhancer of split protei	95.87
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	95.86
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.85
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	95.82
KOG0646	476	consensus WD40 repeat protein [General function pr	95.81
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.8
PTZ00420	568	coronin; Provisional	95.77
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.72
KOG0278	334	consensus Serine/threonine kinase receptor-associa	95.69
PRK13684	334	Ycf48-like protein; Provisional	95.66
KOG0639	705	consensus Transducin-like enhancer of split protei	95.59
KOG0640	430	consensus mRNA cleavage stimulating factor complex	95.59
KOG0283	712	consensus WD40 repeat-containing protein [Function	95.36
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.36
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	95.35
KOG2110	391	consensus Uncharacterized conserved protein, conta	95.16
KOG0646	476	consensus WD40 repeat protein [General function pr	95.11
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	94.99
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	94.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	94.76
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	94.71
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	94.67
KOG0645	312	consensus WD40 repeat protein [General function pr	94.57
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.56
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.51
KOG2048	691	consensus WD40 repeat protein [General function pr	94.48
KOG1273	405	consensus WD40 repeat protein [General function pr	94.46
KOG0310	487	consensus Conserved WD40 repeat-containing protein	94.46
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	94.42
KOG0643	327	consensus Translation initiation factor 3, subunit	94.42
KOG2110	391	consensus Uncharacterized conserved protein, conta	94.39
KOG0288	459	consensus WD40 repeat protein TipD [General functi	94.39
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	94.27
KOG0973	942	consensus Histone transcription regulator HIRA, WD	94.21
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.18
KOG4328	498	consensus WD40 protein [Function unknown]	94.01
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.99
KOG0310	487	consensus Conserved WD40 repeat-containing protein	93.98
KOG0288	459	consensus WD40 repeat protein TipD [General functi	93.93
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.93
KOG2111	346	consensus Uncharacterized conserved protein, conta	93.83
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.8
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	93.79
KOG0284	464	consensus Polyadenylation factor I complex, subuni	93.79
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.78
KOG0641	350	consensus WD40 repeat protein [General function pr	93.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	93.73
KOG0296	399	consensus Angio-associated migratory cell protein	93.68
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	93.67
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	93.63
KOG2315	566	consensus Predicted translation initiation factor	93.63
COG5276	370	Uncharacterized conserved protein [Function unknow	93.58
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.53
PRK13616	591	lipoprotein LpqB; Provisional	93.45
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.4
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	93.4
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	93.32
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	93.26
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	93.09
KOG0645	312	consensus WD40 repeat protein [General function pr	92.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	92.83
KOG2139	445	consensus WD40 repeat protein [General function pr	92.8
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	92.67
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	92.65
PF07494	24	Reg_prop: Two component regulator propeller; Inter	92.64
PHA02713	557	hypothetical protein; Provisional	92.62
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	92.58
KOG2321	703	consensus WD40 repeat protein [General function pr	92.39
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	92.35
PRK13616	591	lipoprotein LpqB; Provisional	92.28
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	92.13
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	92.07
KOG0301	745	consensus Phospholipase A2-activating protein (con	91.8
PHA03098	534	kelch-like protein; Provisional	91.7
KOG0771	398	consensus Prolactin regulatory element-binding pro	91.67
KOG1963	792	consensus WD40 repeat protein [General function pr	91.64
PF07494	24	Reg_prop: Two component regulator propeller; Inter	91.54
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	91.4
KOG2321	703	consensus WD40 repeat protein [General function pr	91.38
KOG0275	508	consensus Conserved WD40 repeat-containing protein	91.19
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.02
PHA02713	557	hypothetical protein; Provisional	90.94
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	90.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	90.8
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.57
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.51
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	90.5
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	90.4
KOG3881	412	consensus Uncharacterized conserved protein [Funct	90.28
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	90.26
KOG0284	464	consensus Polyadenylation factor I complex, subuni	89.98
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	89.73
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.61
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	89.12
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	89.07
KOG0316	307	consensus Conserved WD40 repeat-containing protein	89.04
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	88.74
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	88.66
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.65
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	88.64
KOG0647	347	consensus mRNA export protein (contains WD40 repea	88.4
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	88.04
PHA02790	480	Kelch-like protein; Provisional	87.87
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	87.76
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	87.16
KOG0296	399	consensus Angio-associated migratory cell protein	87.06
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	87.06
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	86.85
KOG1215	877	consensus Low-density lipoprotein receptors contai	86.66
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	86.38
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.26
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	86.2
KOG0308	735	consensus Conserved WD40 repeat-containing protein	86.12
KOG0308	735	consensus Conserved WD40 repeat-containing protein	86.02
PHA03098	534	kelch-like protein; Provisional	85.85
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	85.6
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	85.35
KOG3881	412	consensus Uncharacterized conserved protein [Funct	85.08
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	84.71
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	84.31
KOG4227	609	consensus WD40 repeat protein [General function pr	84.06
PHA02790	480	Kelch-like protein; Provisional	83.41
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	83.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	82.26
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	81.64
KOG0294	362	consensus WD40 repeat-containing protein [Function	81.22
KOG0649	325	consensus WD40 repeat protein [General function pr	80.5

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=2.1e-62  Score=447.78  Aligned_cols=367  Identities=50%  Similarity=0.859  Sum_probs=313.4

Q ss_pred             cchHHHHHHHHHHHhccCCCCCCccCCCCCceeeeecCCCCCCCCCCCccchhccccceeccccccCcceEEEccCCCee
Q 016318            4 RGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGP   83 (391)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gPe~i~~d~~G~~l   83 (391)
                      ++++..++++++++..+++|..+.....+++.   ...++             ...++.+......|||++.+|+.|.--
T Consensus         5 ~~~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~-------------~~~~~l~~~~~~~g~E~~~fd~~~~gp   68 (376)
T KOG1520|consen    5 RFLFLFIFLFLAVIILLYLLSGSSIAGSPDDR---LFSKL-------------PLLGKLIPNNHLTGPESLLFDPQGGGP   68 (376)
T ss_pred             hhhhHHHHHHHHHHHhhhccCcccccCCchhc---ccCCC-------------CcccccccccccCChhhheecccCCCc
Confidence            33444455666777777667766655444432   11111             112222334446799999999988778


Q ss_pred             EEEecCCEEEEEeCC--ceeEEEee--cCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEEeC
Q 016318           84 YTGVADGRILFWDGL--KWTDFAFT--SNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP  159 (391)
Q Consensus        84 y~~~~~g~I~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~  159 (391)
                      |++..+|+|++|.+.  +|..++..  +.+.+..|++     .....++.||||+||+|+..+|+|||||++.||+++++
T Consensus        69 ~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~-----~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p  143 (376)
T KOG1520|consen   69 YTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDP-----GSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGP  143 (376)
T ss_pred             eEEEECCceEEEeccCceEEEEEeccccccccccCCC-----cceecccccCCcceEEeccCCCeEEEEecceeeEEECC
Confidence            999999999999875  78888776  4454444443     13467788999999999986669999999999999999


Q ss_pred             CCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcce
Q 016318          160 EGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNG  239 (391)
Q Consensus       160 ~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng  239 (391)
                      ++++.+.+.++.+|.++++.|+++++++|.+||||+|++|++++++.+++|++++||+++||+.++.++++.+++.+|||
T Consensus       144 ~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NG  223 (376)
T KOG1520|consen  144 EGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNG  223 (376)
T ss_pred             CCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCccceeee
Q 016318          240 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFL  318 (391)
Q Consensus       240 ia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~  318 (391)
                      +|+|+|++++.++|+...||.|||++|+++|+.|+|++ +||+||||+.+++|++|||+...++.+.+++.++|+.|+++
T Consensus       224 laLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~  303 (376)
T KOG1520|consen  224 LALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFI  303 (376)
T ss_pred             ccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHH
Confidence            99999999999999999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             eecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEECCEEEEecCCCCeEEEEeCC
Q 016318          319 LKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS  391 (391)
Q Consensus       319 ~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs~~~~~i~~~~~~  391 (391)
                      .+++........+.-.+.+|..|.+.|.+|++++++||.+|+....++++.|++|+||+||+.+|+|+|++|+
T Consensus       304 ~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~~p~i~~lkl~  376 (376)
T KOG1520|consen  304 AKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLFNPYIARLKLP  376 (376)
T ss_pred             HhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccCcceeEEEecC
Confidence            9998877655544444456677888889999999999999999999999999999999999999999999985

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.95  E-value=6.2e-26  Score=206.83  Aligned_cols=233  Identities=30%  Similarity=0.501  Sum_probs=178.3

Q ss_pred             cceEEEcc-CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           71 PESMAFDP-LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        71 Pe~i~~d~-~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ||++++|+ +|.++|++..+++|++++++ ....+..                        ...|.|++++..+++|||+
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~------------------------~~~~~G~~~~~~~g~l~v~   57 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID------------------------LPGPNGMAFDRPDGRLYVA   57 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------SSSEEEEEEECTTSEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe------------------------cCCCceEEEEccCCEEEEE
Confidence            79999997 88888889899999999988 3222211                        2229999999337999999


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCC-cccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGV-PLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~-~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      +. .++..+|+++++++.+.....+. +...||++++|++|++|++++......         ....|+++++++. ++.
T Consensus        58 ~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~  126 (246)
T PF08450_consen   58 DS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKV  126 (246)
T ss_dssp             ET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEE
T ss_pred             Ec-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeE
Confidence            85 56777799999999887764444 788999999999999999996522110         0111889999998 888


Q ss_pred             EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecccc--CccceeecccC---CCCCceEeCCCCCEEEEEcCCCc
Q 016318          228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK--AGNLEAFAILP---GYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~--~g~~~~~~~~~---g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      +.+.+++..||||+++||++.||++++.+++|++|+++.+.  ....+++.+++   |.||++++|++|++|||....  
T Consensus       127 ~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~--  204 (246)
T PF08450_consen  127 TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG--  204 (246)
T ss_dssp             EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT--
T ss_pred             EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC--
Confidence            88888999999999999999999999999999999987432  34456665543   469999999999999998764  


Q ss_pred             hhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEE---CCEEEEec
Q 016318          303 LYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEK---DGKLWMGS  379 (391)
Q Consensus       303 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~---~g~Lylgs  379 (391)
                                                          +.|.++|++|+.+..+.-+. .   .++.++..   .++||+.|
T Consensus       205 ------------------------------------~~I~~~~p~G~~~~~i~~p~-~---~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  205 ------------------------------------GRIVVFDPDGKLLREIELPV-P---RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             ------------------------------------TEEEEEETTSCEEEEEE-SS-S---SEEEEEEESTTSSEEEEEE
T ss_pred             ------------------------------------CEEEEECCCccEEEEEcCCC-C---CEEEEEEECCCCCEEEEEe
Confidence                                                45888999999988887652 2   35566653   37899987


Q ss_pred             C
Q 016318          380 V  380 (391)
Q Consensus       380 ~  380 (391)
                      -
T Consensus       245 a  245 (246)
T PF08450_consen  245 A  245 (246)
T ss_dssp             B
T ss_pred             C
Confidence            4

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.7e-24  Score=200.43  Aligned_cols=269  Identities=24%  Similarity=0.334  Sum_probs=190.3

Q ss_pred             CcceEEEccCCC-eeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           70 GPESMAFDPLGR-GPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        70 gPe~i~~d~~G~-~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ..|+...+++.+ ++|++..+++|+++++.  ..+.+..                       ....+.+..++. ++.|+
T Consensus        26 ~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-----------------------p~~~~~~~~~d~-~g~Lv   81 (307)
T COG3386          26 LGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-----------------------PGGFSSGALIDA-GGRLI   81 (307)
T ss_pred             cccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-----------------------CCCcccceeecC-CCeEE
Confidence            344444554444 79999999999999986  3333321                       134466778887 78888


Q ss_pred             EEECCCCeEEEeCCCCee-EEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          147 IADAYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       147 V~d~~~gl~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      +++  .|+..++++++.. +.+....++.+...+|+..++++|.+||++++. +.     ....+..+.|.||++||.++
T Consensus        82 ~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~  153 (307)
T COG3386          82 ACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGG  153 (307)
T ss_pred             EEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCC
Confidence            875  4566666565555 667677778888999999999999999999763 11     22234466789999999766


Q ss_pred             eEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec---cccCccc-eeecc-cCCCCCceEeCCCCCEEEEEcCC
Q 016318          226 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI---GEKAGNL-EAFAI-LPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       226 ~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~---g~~~g~~-~~~~~-~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      ..+.+.+.+..|||||+|||++.+|++||..++|++++.+   +...+.. .++.+ .+|.|||+++|.+|++|++...+
T Consensus       154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~  233 (307)
T COG3386         154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG  233 (307)
T ss_pred             EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence            6666556699999999999999999999999999999987   4433332 22333 57999999999999999654432


Q ss_pred             CchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEECCEEEEecC
Q 016318          301 RSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSV  380 (391)
Q Consensus       301 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs~  380 (391)
                      ..    .+..+.+.++++.++..|.....++++++          ++.+.+++.+...+.. ..++ .....|.||....
T Consensus       234 g~----~v~~~~pdG~l~~~i~lP~~~~t~~~FgG----------~~~~~L~iTs~~~~~~-~~~~-~~~~~G~lf~~~~  297 (307)
T COG3386         234 GG----RVVRFNPDGKLLGEIKLPVKRPTNPAFGG----------PDLNTLYITSARSGMS-RMLT-ADPLGGGLFSLRL  297 (307)
T ss_pred             Cc----eEEEECCCCcEEEEEECCCCCCccceEeC----------CCcCEEEEEecCCCCC-cccc-ccccCceEEEEec
Confidence            21    13345556888888888766666655553          4567777776666665 5555 5556688888777


Q ss_pred             CCCeEE
Q 016318          381 LMPFVA  386 (391)
Q Consensus       381 ~~~~i~  386 (391)
                      ..+.+.
T Consensus       298 ~~~G~~  303 (307)
T COG3386         298 EVKGLP  303 (307)
T ss_pred             ccCCcc
Confidence            665443

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.88  E-value=5.3e-23  Score=153.32  Aligned_cols=88  Identities=52%  Similarity=0.938  Sum_probs=75.2

Q ss_pred             cceeecCC-CCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCe
Q 016318          180 NDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR  258 (391)
Q Consensus       180 ~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~  258 (391)
                      |+++++++ |.||||++|++|++++++.+++|+.++|||++|||++++++++.+++.+||||++++|+++++|+|+..+|
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            68999998 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeccc
Q 016318          259 LHKYWLIGE  267 (391)
Q Consensus       259 I~~~~~~g~  267 (391)
                      |+|||++|+
T Consensus        81 i~rywl~Gp   89 (89)
T PF03088_consen   81 ILRYWLKGP   89 (89)
T ss_dssp             EEEEESSST
T ss_pred             EEEEEEeCC
Confidence            999999985

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.84  E-value=6.7e-19  Score=153.88  Aligned_cols=238  Identities=17%  Similarity=0.211  Sum_probs=177.6

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      ..-.+|..++.++||.++|++...|.|-++|+.  +.+.+...                      .+.+|++|.+++ +|
T Consensus        59 p~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg----------------------~Ga~Phgiv~gp-dg  115 (353)
T COG4257          59 PNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLG----------------------SGASPHGIVVGP-DG  115 (353)
T ss_pred             CCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecC----------------------CCCCCceEEECC-CC
Confidence            345689999999999989999999999999997  44444321                      267899999999 89


Q ss_pred             cEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          144 DLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       144 ~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      .+||+|...+|.++|+++.+++.+.-+.+ ......+...+|++|++||+...                  |.--+.||.
T Consensus       116 ~~Witd~~~aI~R~dpkt~evt~f~lp~~-~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa  176 (353)
T COG4257         116 SAWITDTGLAIGRLDPKTLEVTRFPLPLE-HADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPA  176 (353)
T ss_pred             CeeEecCcceeEEecCcccceEEeecccc-cCCCcccceeeCCCccEEEeecc------------------ccceecCcc
Confidence            99999999999999999999888753322 12235677899999999999854                  444589999


Q ss_pred             CCeEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc---cCCCCCceEeCCCCCEEEEEcC
Q 016318          224 TKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       224 ~~~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~---~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      ++.++++... ...|+||+..|||+ +|+++-..+-|-+++   +..+..+++..   +....+.|..|+.|++|+++..
T Consensus       177 ~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiarid---p~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg  252 (353)
T COG4257         177 RNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARID---PFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG  252 (353)
T ss_pred             cCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEcc---cccCCcceecCCCcccccccccccCccCcEEEeccC
Confidence            9988888643 35799999999999 999988889999998   44455566542   1223456889999999999776


Q ss_pred             CCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEEC-CEEEEe
Q 016318          300 RRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKD-GKLWMG  378 (391)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~~-g~Lylg  378 (391)
                      .                                      +.+.+||+..+.-.+|--++.+.  ..-++..++ |.+|+.
T Consensus       253 ~--------------------------------------g~l~rfdPs~~sW~eypLPgs~a--rpys~rVD~~grVW~s  292 (353)
T COG4257         253 T--------------------------------------GSLHRFDPSVTSWIEYPLPGSKA--RPYSMRVDRHGRVWLS  292 (353)
T ss_pred             C--------------------------------------ceeeEeCcccccceeeeCCCCCC--CcceeeeccCCcEEee
Confidence            5                                      44666777766555654433322  122343333 788888


Q ss_pred             cCCCCeEEEEe
Q 016318          379 SVLMPFVAVYD  389 (391)
Q Consensus       379 s~~~~~i~~~~  389 (391)
                      ...+++|+|++
T Consensus       293 ea~agai~rfd  303 (353)
T COG4257         293 EADAGAIGRFD  303 (353)
T ss_pred             ccccCceeecC
Confidence            88888887765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.81  E-value=6.6e-17  Score=173.22  Aligned_cols=213  Identities=21%  Similarity=0.234  Sum_probs=147.1

Q ss_pred             cccccCcceEEEccC-CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           65 LNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      ...+..|.++++|++ |+++++++.+++|.+++.+ ........ ..  ..+...+.     .......+|.||++++++
T Consensus       564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-~g--~~G~~dG~-----~~~a~f~~P~GIavd~~g  635 (1057)
T PLN02919        564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-TG--EEGLRDGS-----FEDATFNRPQGLAYNAKK  635 (1057)
T ss_pred             cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-CC--CcCCCCCc-----hhccccCCCcEEEEeCCC
Confidence            345789999999974 6666667788999999887 33222111 00  00100111     112246789999999855


Q ss_pred             CcEEEEECCCC-eEEEeCCCCeeEEceec------cCC------CcccCCcceeecC-CCCEEEEeCCCcccchhheeee
Q 016318          143 GDLYIADAYFG-LMKVGPEGGLATSLATE------AEG------VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       143 g~L~V~d~~~g-l~~~d~~~g~~~~~~~~------~~~------~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      +.|||+|..++ |.++|..++.++.+...      ..+      ..+..|.++++++ +|++|+++++            
T Consensus       636 n~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------------  703 (1057)
T PLN02919        636 NLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------------  703 (1057)
T ss_pred             CEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------------
Confidence            56999999865 88899998888877431      111      1267899999999 7899999965            


Q ss_pred             cccCCCceEEEEeCCCCeEEEec---------------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC----
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLL---------------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA----  269 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~---------------~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~----  269 (391)
                           +++|++||+.++.+.++.               ..+..|+||++++|++.|||+++.+++|+++++++...    
T Consensus       704 -----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        704 -----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             -----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence                 468888888777665432               12457999999999999999999999999999764210    


Q ss_pred             c-cc---e---eecc--------cCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          270 G-NL---E---AFAI--------LPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       270 g-~~---~---~~~~--------~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      + ..   .   .|.+        .-..|.++++|++|++||+...++.
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r  826 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK  826 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE
Confidence            0 00   0   0100        0125889999999999999877644

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.65  E-value=7.6e-14  Score=122.46  Aligned_cols=244  Identities=16%  Similarity=0.215  Sum_probs=174.4

Q ss_pred             cccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccce
Q 016318           58 QNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLG  135 (391)
Q Consensus        58 ~~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~g  135 (391)
                      .+++....|.-..|..|.+++||..+++++.. .|.|++++  .+++|....+.                   ....-..
T Consensus        93 Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~-------------------a~~nlet  152 (353)
T COG4257          93 GEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEH-------------------ADANLET  152 (353)
T ss_pred             CceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccccc-------------------CCCcccc
Confidence            45677777888899999999999955555555 89999997  66666433211                   1122234


Q ss_pred             EEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318          136 LRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       136 i~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ..||+ .|+||+... .| --++||.++.++.+..+ .   ...|++|++.+||.+|+++-.                 .
T Consensus       153 ~vfD~-~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP-q---G~gpyGi~atpdGsvwyasla-----------------g  209 (353)
T COG4257         153 AVFDP-WGNLWFTGQ-IGAYGRLDPARNVISVFPAP-Q---GGGPYGICATPDGSVWYASLA-----------------G  209 (353)
T ss_pred             eeeCC-CccEEEeec-cccceecCcccCceeeeccC-C---CCCCcceEECCCCcEEEEecc-----------------c
Confidence            57898 899999754 34 34899999888887544 2   346999999999999999722                 3


Q ss_pred             ceEEEEeCCCCeEEEeccC---CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC---CCCceEeC
Q 016318          215 GRVLKYDPTTKQTTVLLRN---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG---YPDNVRTN  288 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~---~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g---~p~~i~~d  288 (391)
                      ..|.++||.++..+++...   -+....|-.++.|+ +|+++..+.++++|+...   .....+ .+|+   .|+.|.+|
T Consensus       210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~---~sW~ey-pLPgs~arpys~rVD  284 (353)
T COG4257         210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSV---TSWIEY-PLPGSKARPYSMRVD  284 (353)
T ss_pred             cceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCccc---ccceee-eCCCCCCCcceeeec
Confidence            5789999999877666422   12345677888898 999999999999998432   222222 2555   57899999


Q ss_pred             CCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEE
Q 016318          289 EKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEV  368 (391)
Q Consensus       289 ~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~  368 (391)
                      ..|++|......                                      +.+.+||+....+.+|-.+.-..  ..-.+
T Consensus       285 ~~grVW~sea~a--------------------------------------gai~rfdpeta~ftv~p~pr~n~--gn~ql  324 (353)
T COG4257         285 RHGRVWLSEADA--------------------------------------GAIGRFDPETARFTVLPIPRPNS--GNIQL  324 (353)
T ss_pred             cCCcEEeecccc--------------------------------------CceeecCcccceEEEecCCCCCC--Cceec
Confidence            999999987654                                      44788999888888885543221  12233


Q ss_pred             EEECCEEEEecCCCCeEEEEe
Q 016318          369 EEKDGKLWMGSVLMPFVAVYD  389 (391)
Q Consensus       369 ~~~~g~Lylgs~~~~~i~~~~  389 (391)
                      ....|++|++....+.+.+++
T Consensus       325 ~gr~ge~W~~e~gvd~lv~~r  345 (353)
T COG4257         325 DGRPGELWFTEAGVDALVTTR  345 (353)
T ss_pred             cCCCCceeecccCcceeEEEE
Confidence            445589999998888887765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.63  E-value=8.1e-14  Score=149.65  Aligned_cols=211  Identities=15%  Similarity=0.198  Sum_probs=144.7

Q ss_pred             cccCcceEEEccCCCeeEE-EecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           67 QIQGPESMAFDPLGRGPYT-GVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~-~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      .+..|.+|++|++|+.+|+ ++.+++|.+++..  .+++++..+... ....+ +.    .........|.+++++++++
T Consensus       622 ~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g-~~~~g-g~----~~~~~~ln~P~gVa~dp~~g  695 (1057)
T PLN02919        622 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKG-SDYQG-GK----KGTSQVLNSPWDVCFEPVNE  695 (1057)
T ss_pred             ccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCccc-CCCCC-Ch----hhhHhhcCCCeEEEEecCCC
Confidence            3567999999998886666 5566788888875  444454321100 00000 00    00111257899999998678


Q ss_pred             cEEEEECCCC-eEEEeCCCCeeEEceec-----cCC-----CcccCCcceeecCCCC-EEEEeCCCcccchhheeeeccc
Q 016318          144 DLYIADAYFG-LMKVGPEGGLATSLATE-----AEG-----VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       144 ~L~V~d~~~g-l~~~d~~~g~~~~~~~~-----~~~-----~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      .|||++..++ |+++|..++.+..+...     ..+     ..+..|++|+++++|+ ||++++.               
T Consensus       696 ~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~---------------  760 (1057)
T PLN02919        696 KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE---------------  760 (1057)
T ss_pred             eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC---------------
Confidence            9999998755 99999988877655321     011     2356899999999986 9999965               


Q ss_pred             CCCceEEEEeCCCCeEEEecc----------------------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC
Q 016318          212 EDTGRVLKYDPTTKQTTVLLR----------------------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA  269 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~~----------------------~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~  269 (391)
                        +++|.+||++++....+..                      .+..|.|++++++|+ +||+++.+++|.+++.++.. 
T Consensus       761 --n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~-  836 (1057)
T PLN02919        761 --SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKR-  836 (1057)
T ss_pred             --CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCe-
Confidence              5789999988766443210                      134689999999998 99999999999999976531 


Q ss_pred             ccceeecc--------------cCCCCCceEeCCCCCEEEEEcCCCchh
Q 016318          270 GNLEAFAI--------------LPGYPDNVRTNEKGEFWVAIHCRRSLY  304 (391)
Q Consensus       270 g~~~~~~~--------------~~g~p~~i~~d~~G~lwva~~~~~~~~  304 (391)
                        ...+..              .-..|.+|+++++|++||+...++.+.
T Consensus       837 --v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir  883 (1057)
T PLN02919        837 --VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR  883 (1057)
T ss_pred             --EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence              111110              012589999999999999987766543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.52  E-value=2.7e-12  Score=116.87  Aligned_cols=138  Identities=25%  Similarity=0.403  Sum_probs=103.7

Q ss_pred             ceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeec-CCCCEEEEeCCCcccchhheeeeccc
Q 016318          134 LGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d-~~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      -|.++++++++||+.|...+ |+++++++++.+.+...       .|++++++ ++|.+|+++.                
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~-------~~~G~~~~~~~g~l~v~~~----------------   59 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP-------GPNGMAFDRPDGRLYVADS----------------   59 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS-------SEEEEEEECTTSEEEEEET----------------
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC-------CCceEEEEccCCEEEEEEc----------------
Confidence            46788876899999998765 99999999876654321       28999998 7899999995                


Q ss_pred             CCCceEEEEeCCCCeEEEecc------CCCCcceEEEccCCCEEEEEeCCC--------CeEEEEEeccccCccceeecc
Q 016318          212 EDTGRVLKYDPTTKQTTVLLR------NLQFPNGLSLSKDKSFFVFCEGSV--------GRLHKYWLIGEKAGNLEAFAI  277 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~~------~~~~~ngia~~~d~~~l~v~et~~--------~~I~~~~~~g~~~g~~~~~~~  277 (391)
                         +++..+|+++++++.+..      .+..||.++++++|+ +|+++...        ++|++++.+    ++.....+
T Consensus        60 ---~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~  131 (246)
T PF08450_consen   60 ---GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVAD  131 (246)
T ss_dssp             ---TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEE
T ss_pred             ---CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC----CeEEEEec
Confidence               356667999998877753      356899999999999 99998754        569999855    23344433


Q ss_pred             cCCCCCceEeCCCCC-EEEEEcCCCc
Q 016318          278 LPGYPDNVRTNEKGE-FWVAIHCRRS  302 (391)
Q Consensus       278 ~~g~p~~i~~d~~G~-lwva~~~~~~  302 (391)
                      .-..|++|+++++|+ +|++......
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             CcccccceEECCcchheeecccccce
Confidence            235799999999997 7887766543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.50  E-value=1.4e-11  Score=118.83  Aligned_cols=169  Identities=23%  Similarity=0.315  Sum_probs=115.2

Q ss_pred             cccCcceEEEccCCCeeEEEec------------CC-EEEEEeCC-------ceeEEEeecCCCcccCCCCCCccccccc
Q 016318           67 QIQGPESMAFDPLGRGPYTGVA------------DG-RILFWDGL-------KWTDFAFTSNNRSELCNPKPIATSYLKN  126 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~------------~g-~I~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (391)
                      .+..|..|++|++|+ +|++..            .+ +|++++..       +++.|+                      
T Consensus        12 ~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa----------------------   68 (367)
T TIGR02604        12 LLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA----------------------   68 (367)
T ss_pred             ccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee----------------------
Confidence            478999999999999 777752            23 88888542       122222                      


Q ss_pred             cCccCccceEEEecCCCcEEEEECCCCeEEE-eCCC-----CeeEEceeccCCC---cccCCcceeecCCCCEEEEeCCC
Q 016318          127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKV-GPEG-----GLATSLATEAEGV---PLRFTNDLDIDDEGNVYFTDSST  197 (391)
Q Consensus       127 ~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~-d~~~-----g~~~~~~~~~~~~---~~~~~~~l~~d~~G~ly~td~~~  197 (391)
                       .....|.||++.+ ++ |||++ ...|+++ +.++     ++.+.+.+.....   ....++++++++||.||++..+.
T Consensus        69 -~~l~~p~Gi~~~~-~G-lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~  144 (367)
T TIGR02604        69 -EELSMVTGLAVAV-GG-VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNT  144 (367)
T ss_pred             -cCCCCccceeEec-CC-EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccC
Confidence             1246799999987 66 99986 3458888 4432     2445555443322   24568999999999999998642


Q ss_pred             cccc--hhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          198 NYQR--RNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       198 ~~~~--~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                      ....  ........+....|+++++++++++.+++..++..|+|++++++|+ +|+++.......++.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i~  211 (367)
T TIGR02604       145 LASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRVT  211 (367)
T ss_pred             CCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEEc
Confidence            1100  0000011122335789999999999999999999999999999998 889887655555543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.48  E-value=7.4e-11  Score=112.20  Aligned_cols=238  Identities=14%  Similarity=0.166  Sum_probs=139.9

Q ss_pred             cCcceEEEccCCCeeEEEec-CCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           69 QGPESMAFDPLGRGPYTGVA-DGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      .+|..++++++|+.+|++.. +++|..|+.+   .++.....                     ...+.|.++++++++..
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~---------------------~~~~~p~~i~~~~~g~~   93 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES---------------------PLPGSPTHISTDHQGRF   93 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee---------------------cCCCCceEEEECCCCCE
Confidence            47999999999998898764 5667555432   22222110                     11356899999985556


Q ss_pred             EEEEECCCC-eEEEeCCC-CeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          145 LYIADAYFG-LMKVGPEG-GLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       145 L~V~d~~~g-l~~~d~~~-g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      ||++....+ |..++.++ +..........+  ...|..++++++|+ +|+++..                 .+.|..||
T Consensus        94 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d  154 (330)
T PRK11028         94 LFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFT  154 (330)
T ss_pred             EEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEE
Confidence            899876544 67776642 222111111111  23578889999985 6677743                 46788887


Q ss_pred             CCC-CeEEE------eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc---cC------CCCCce
Q 016318          222 PTT-KQTTV------LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LP------GYPDNV  285 (391)
Q Consensus       222 ~~~-~~~~~------~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~---~~------g~p~~i  285 (391)
                      .++ +.+..      -......|++++++||++++|+++...+.|..|+++.. .++.+....   .|      ..+..|
T Consensus       155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i  233 (330)
T PRK11028        155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADI  233 (330)
T ss_pred             ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeE
Confidence            754 33321      11223568999999999999999887899999988632 123333222   11      133458


Q ss_pred             EeCCCCC-EEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCC
Q 016318          286 RTNEKGE-FWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKG  359 (391)
Q Consensus       286 ~~d~~G~-lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g  359 (391)
                      .++++|+ +|++......+....+.......+++.+++..            ..+.-+.++++|+.+++-+..++
T Consensus       234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~------------~~p~~~~~~~dg~~l~va~~~~~  296 (330)
T PRK11028        234 HITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE------------TQPRGFNIDHSGKYLIAAGQKSH  296 (330)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc------------ccCCceEECCCCCEEEEEEccCC
Confidence            8999998 77764443333221111111111233332221            12334678999998887654444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=9.7e-11  Score=112.07  Aligned_cols=243  Identities=19%  Similarity=0.246  Sum_probs=146.1

Q ss_pred             cccCcceEEEccCCCeeEEEecC----CEEEEEe--CC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318           67 QIQGPESMAFDPLGRGPYTGVAD----GRILFWD--GL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~----g~I~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~  138 (391)
                      ....|..++++++++.+|+....    |.|..+.  .+  .++.+...                    ......|..+++
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~--------------------~~~g~~p~~i~~   94 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV--------------------PSGGSSPCHIAV   94 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE--------------------EESSSCEEEEEE
T ss_pred             CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee--------------------ccCCCCcEEEEE
Confidence            35699999999999999999874    5666553  32  23333211                    112567889999


Q ss_pred             ecCCCcEEEEECCCC-eEEEeCCC-CeeEEceec---------cCCCcccCCcceeecCCCC-EEEEeCCCcccchhhee
Q 016318          139 DKKTGDLYIADAYFG-LMKVGPEG-GLATSLATE---------AEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       139 d~~~g~L~V~d~~~g-l~~~d~~~-g~~~~~~~~---------~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~  206 (391)
                      ++++..|||+++..| +..++.+. |.+......         ...+....|..+.++++|+ +|++|-+          
T Consensus        95 ~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG----------  164 (345)
T PF10282_consen   95 DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG----------  164 (345)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT----------
T ss_pred             ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC----------
Confidence            986667999998766 54544433 444433110         0112345778899999985 8888854          


Q ss_pred             eecccCCCceEEEEeCCCC--eEEE----eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec---c
Q 016318          207 LVFSAEDTGRVLKYDPTTK--QTTV----LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA---I  277 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~~--~~~~----~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~---~  277 (391)
                             ..+|+.|+.+..  ++..    -......|..++++||++++||.....+.|..|++... .+..+...   .
T Consensus       165 -------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~  236 (345)
T PF10282_consen  165 -------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTIST  236 (345)
T ss_dssp             -------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEES
T ss_pred             -------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeee
Confidence                   456766665443  3433    22445679999999999999999999999999988722 23333322   2


Q ss_pred             cC----C--CCCceEeCCCCC-EEEEEcCCCchhhhhhhcCcccee--eeeecCccceeeeEEeecCccceEEEEECCCC
Q 016318          278 LP----G--YPDNVRTNEKGE-FWVAIHCRRSLYSHLMALYPKIRH--FLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG  348 (391)
Q Consensus       278 ~~----g--~p~~i~~d~~G~-lwva~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g  348 (391)
                      +|    +  .|..|+++++|+ +||+......+....+  .+..++  .+..++          .+ ...+.-+.++++|
T Consensus       237 ~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~--d~~~g~l~~~~~~~----------~~-G~~Pr~~~~s~~g  303 (345)
T PF10282_consen  237 LPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL--DPATGTLTLVQTVP----------TG-GKFPRHFAFSPDG  303 (345)
T ss_dssp             CETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE--CTTTTTEEEEEEEE----------ES-SSSEEEEEE-TTS
T ss_pred             ccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE--ecCCCceEEEEEEe----------CC-CCCccEEEEeCCC
Confidence            32    1  456799999998 7887766544322111  111111  111111          11 2335667788999


Q ss_pred             CEEEEEeCCCCC
Q 016318          349 KILQVLEDSKGK  360 (391)
Q Consensus       349 ~~~~~~~~~~g~  360 (391)
                      +.+.+-+..++.
T Consensus       304 ~~l~Va~~~s~~  315 (345)
T PF10282_consen  304 RYLYVANQDSNT  315 (345)
T ss_dssp             SEEEEEETTTTE
T ss_pred             CEEEEEecCCCe
Confidence            988877655544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.45  E-value=7.2e-12  Score=107.72  Aligned_cols=151  Identities=18%  Similarity=0.205  Sum_probs=112.6

Q ss_pred             ccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC
Q 016318          176 LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS  255 (391)
Q Consensus       176 ~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~  255 (391)
                      -+..|+--+||+|+.|...++ .++        .+..+.++.++.+...++++.+...+..+||++++.|.+..|+.++.
T Consensus       108 knR~NDgkvdP~Gryy~GtMa-d~~--------~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl  178 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMA-DFG--------DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSL  178 (310)
T ss_pred             hcccccCccCCCCceeeeeec-ccc--------ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccC
Confidence            457788899999999888754 111        12233455555555668999998999999999999999999999999


Q ss_pred             CCeE--EEEEeccccCccceeeccc-------CCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccce
Q 016318          256 VGRL--HKYWLIGEKAGNLEAFAIL-------PGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAK  326 (391)
Q Consensus       256 ~~~I--~~~~~~g~~~g~~~~~~~~-------~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~  326 (391)
                      +..|  |.|+..+....+.+++.++       +-.||++++|.+|++|||+.++..+    ....|..||.+..+-.|..
T Consensus       179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V----~~~dp~tGK~L~eiklPt~  254 (310)
T KOG4499|consen  179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV----QKVDPTTGKILLEIKLPTP  254 (310)
T ss_pred             ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE----EEECCCCCcEEEEEEcCCC
Confidence            9999  6665665544444444332       2379999999999999999988765    3347888998888777777


Q ss_pred             eeeEEeecCccce
Q 016318          327 THYLIHVGGRLHA  339 (391)
Q Consensus       327 ~~~~~~~~~~~~~  339 (391)
                      ...+++++++...
T Consensus       255 qitsccFgGkn~d  267 (310)
T KOG4499|consen  255 QITSCCFGGKNLD  267 (310)
T ss_pred             ceEEEEecCCCcc
Confidence            7788888876544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.40  E-value=2.9e-10  Score=108.73  Aligned_cols=205  Identities=18%  Similarity=0.237  Sum_probs=125.6

Q ss_pred             ccCcceEEEccCCCeeEEEec-CCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           68 IQGPESMAFDPLGRGPYTGVA-DGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      -.+|..++++++|+.+|++.+ +|.|..++.+   ...........     .+.++    .........|+.+.++++++
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~-----~g~g~----~~~rq~~~h~H~v~~~pdg~  156 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH-----EGSGP----NPDRQEGPHPHQVVFSPDGR  156 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES-----EEEES----STTTTSSTCEEEEEE-TTSS
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc-----CCCCC----cccccccccceeEEECCCCC
Confidence            358999999999999999886 5666555433   22221110000     00000    00112356799999999556


Q ss_pred             cEEEEECCCC-eEEEeCC--CCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceE--
Q 016318          144 DLYIADAYFG-LMKVGPE--GGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRV--  217 (391)
Q Consensus       144 ~L~V~d~~~g-l~~~d~~--~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l--  217 (391)
                      .+||+|.+.. |+.++.+  +++++.... ..-.....|++++++++| .+|+....                 ++.|  
T Consensus       157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~-~~~~~G~GPRh~~f~pdg~~~Yv~~e~-----------------s~~v~v  218 (345)
T PF10282_consen  157 FVYVPDLGADRVYVYDIDDDTGKLTPVDS-IKVPPGSGPRHLAFSPDGKYAYVVNEL-----------------SNTVSV  218 (345)
T ss_dssp             EEEEEETTTTEEEEEEE-TTS-TEEEEEE-EECSTTSSEEEEEE-TTSSEEEEEETT-----------------TTEEEE
T ss_pred             EEEEEecCCCEEEEEEEeCCCceEEEeec-cccccCCCCcEEEEcCCcCEEEEecCC-----------------CCcEEE
Confidence            6999998754 6665554  444544221 112234579999999998 58888743                 2444  


Q ss_pred             EEEeCCCCeEEEec------cC---CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc--CC-CCCce
Q 016318          218 LKYDPTTKQTTVLL------RN---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PG-YPDNV  285 (391)
Q Consensus       218 ~~~d~~~~~~~~~~------~~---~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~--~g-~p~~i  285 (391)
                      +.++..+++++.+.      ..   ...+.+|+++|||++||+++...+.|..|.++.. .++.+.....  .| .|+++
T Consensus       219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~l~~~~~~~~~G~~Pr~~  297 (345)
T PF10282_consen  219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-TGTLTLVQTVPTGGKFPRHF  297 (345)
T ss_dssp             EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-TTTEEEEEEEEESSSSEEEE
T ss_pred             EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-CCceEEEEEEeCCCCCccEE
Confidence            55555566655432      11   1267899999999999999999999999998542 2444433322  23 69999


Q ss_pred             EeCCCCC-EEEEEcCC
Q 016318          286 RTNEKGE-FWVAIHCR  300 (391)
Q Consensus       286 ~~d~~G~-lwva~~~~  300 (391)
                      +++++|+ +||+....
T Consensus       298 ~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  298 AFSPDGRYLYVANQDS  313 (345)
T ss_dssp             EE-TTSSEEEEEETTT
T ss_pred             EEeCCCCEEEEEecCC
Confidence            9999999 66666554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.25  E-value=1.5e-08  Score=96.34  Aligned_cols=154  Identities=12%  Similarity=0.090  Sum_probs=99.2

Q ss_pred             cCccceEEEecCCCcEEEEECC-CCeEEEeCC-CCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhhee
Q 016318          130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPE-GGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~-~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~  206 (391)
                      .+.|..+++++++..||++... .+|..++.+ +++++.......   ...|..++++++|+ +|++...          
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~---~~~p~~i~~~~~g~~l~v~~~~----------  100 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL---PGSPTHISTDHQGRFLFSASYN----------  100 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC---CCCceEEEECCCCCEEEEEEcC----------
Confidence            4668899999855568998764 457666554 455544322111   12578999999996 6666532          


Q ss_pred             eecccCCCceEEEEeCCC-CeE---EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccce----eecc-
Q 016318          207 LVFSAEDTGRVLKYDPTT-KQT---TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE----AFAI-  277 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~-~~~---~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~----~~~~-  277 (391)
                             .+.+..|+.++ +..   .........|.+++++||++++|+++...+.|+.|+++..  +...    .... 
T Consensus       101 -------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~--g~l~~~~~~~~~~  171 (330)
T PRK11028        101 -------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD--GHLVAQEPAEVTT  171 (330)
T ss_pred             -------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC--CcccccCCCceec
Confidence                   46777776642 222   1112344578999999999999999988899999998642  2111    1111 


Q ss_pred             -cCCCCCceEeCCCCC-EEEEEcCCCchhh
Q 016318          278 -LPGYPDNVRTNEKGE-FWVAIHCRRSLYS  305 (391)
Q Consensus       278 -~~g~p~~i~~d~~G~-lwva~~~~~~~~~  305 (391)
                       ....|..++++++|+ +|++......+..
T Consensus       172 ~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v  201 (330)
T PRK11028        172 VEGAGPRHMVFHPNQQYAYCVNELNSSVDV  201 (330)
T ss_pred             CCCCCCceEEECCCCCEEEEEecCCCEEEE
Confidence             123589999999998 6777654444433

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.23  E-value=8.9e-09  Score=94.16  Aligned_cols=202  Identities=16%  Similarity=0.202  Sum_probs=132.3

Q ss_pred             ccCcceEEEccCCCeeEEEecCCEEEEEeC---C-ce----eEEEeecCCCcccCCCCCCccccccccCccCccceEEEe
Q 016318           68 IQGPESMAFDPLGRGPYTGVADGRILFWDG---L-KW----TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~---~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d  139 (391)
                      ...|..+++|++|+.+|++.+..+.+.+-+   + ..    ..+.....         ++     ........++...++
T Consensus        88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~---------~p-----~~rQ~~~h~H~a~~t  153 (346)
T COG2706          88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS---------GP-----HERQESPHVHSANFT  153 (346)
T ss_pred             CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC---------CC-----CccccCCccceeeeC
Confidence            357899999999999999988755444422   1 11    11111110         00     111112336778888


Q ss_pred             cCCCcEEEEECCC-CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceE
Q 016318          140 KKTGDLYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRV  217 (391)
Q Consensus       140 ~~~g~L~V~d~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l  217 (391)
                      ++++.|+++|-+. .|+.++.+.|+++..... .-.+...|+.|++.++|. .|+..               |...+=-+
T Consensus       154 P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-~v~~G~GPRHi~FHpn~k~aY~v~---------------EL~stV~v  217 (346)
T COG2706         154 PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-EVKPGAGPRHIVFHPNGKYAYLVN---------------ELNSTVDV  217 (346)
T ss_pred             CCCCEEEEeecCCceEEEEEcccCcccccccc-ccCCCCCcceEEEcCCCcEEEEEe---------------ccCCEEEE
Confidence            8545688888774 477777777766654322 224556899999999996 66665               23334456


Q ss_pred             EEEeCCCCeEEEec------cCCC---CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCC-CCCce
Q 016318          218 LKYDPTTKQTTVLL------RNLQ---FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPG-YPDNV  285 (391)
Q Consensus       218 ~~~d~~~~~~~~~~------~~~~---~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g-~p~~i  285 (391)
                      +.||+..++++.+.      +++.   ....|.+++||++||+++...+.|+.|.++.. .++.+.+..  ..| .|+..
T Consensus       218 ~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~-~g~L~~~~~~~teg~~PR~F  296 (346)
T COG2706         218 LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD-GGKLELVGITPTEGQFPRDF  296 (346)
T ss_pred             EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC-CCEEEEEEEeccCCcCCccc
Confidence            77888878877663      2222   23457899999999999999899999988742 244444432  335 49999


Q ss_pred             EeCCCCCEEEEEcCC
Q 016318          286 RTNEKGEFWVAIHCR  300 (391)
Q Consensus       286 ~~d~~G~lwva~~~~  300 (391)
                      .+++.|++.++....
T Consensus       297 ~i~~~g~~Liaa~q~  311 (346)
T COG2706         297 NINPSGRFLIAANQK  311 (346)
T ss_pred             eeCCCCCEEEEEccC
Confidence            999999988887654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.20  E-value=3.7e-09  Score=98.42  Aligned_cols=183  Identities=22%  Similarity=0.286  Sum_probs=119.4

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCce-eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      +....++..|. +++...+..++..+.... +.++..                  .......||....+++ +|++|+++
T Consensus        69 ~~~~~~d~~g~-Lv~~~~g~~~~~~~~~~~~t~~~~~------------------~~~~~~~r~ND~~v~p-dG~~wfgt  128 (307)
T COG3386          69 SSGALIDAGGR-LIACEHGVRLLDPDTGGKITLLAEP------------------EDGLPLNRPNDGVVDP-DGRIWFGD  128 (307)
T ss_pred             ccceeecCCCe-EEEEccccEEEeccCCceeEEeccc------------------cCCCCcCCCCceeEcC-CCCEEEeC
Confidence            55666776665 666655544444433333 333221                  1112358899999999 89999998


Q ss_pred             CC-----C------C-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCce
Q 016318          150 AY-----F------G-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       150 ~~-----~------g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      ..     .      | ||++++.++..+.+..     .+..+|+|++++|| .+|++|+.                 .++
T Consensus       129 ~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~-----~~~~~NGla~SpDg~tly~aDT~-----------------~~~  186 (307)
T COG3386         129 MGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD-----DLTIPNGLAFSPDGKTLYVADTP-----------------ANR  186 (307)
T ss_pred             CCccccCccccCCcceEEEEcCCCCEEEeecC-----cEEecCceEECCCCCEEEEEeCC-----------------CCe
Confidence            87     2      3 9999997655544432     25689999999999 89999975                 468


Q ss_pred             EEEEeCCC--C----eE-EEec-cCCCCcceEEEccCCCEEE-EEeCCCCeEEEEEeccccCccceeecccC-CCCCceE
Q 016318          217 VLKYDPTT--K----QT-TVLL-RNLQFPNGLSLSKDKSFFV-FCEGSVGRLHKYWLIGEKAGNLEAFAILP-GYPDNVR  286 (391)
Q Consensus       217 l~~~d~~~--~----~~-~~~~-~~~~~~ngia~~~d~~~l~-v~et~~~~I~~~~~~g~~~g~~~~~~~~~-g~p~~i~  286 (391)
                      +++|+.+.  +    +. .+.. ..-..|.|++++.+|+ +| .+...+.+|.+++.+|..    .....+| ..|.+++
T Consensus       187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG~l----~~~i~lP~~~~t~~~  261 (307)
T COG3386         187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDGKL----LGEIKLPVKRPTNPA  261 (307)
T ss_pred             EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCCCcE----EEEEECCCCCCccce
Confidence            88886541  2    11 1111 1235799999999999 78 444444599999876532    2223456 5788888


Q ss_pred             eCCC--CCEEEEEcCC
Q 016318          287 TNEK--GEFWVAIHCR  300 (391)
Q Consensus       287 ~d~~--G~lwva~~~~  300 (391)
                      +-..  ..|||+....
T Consensus       262 FgG~~~~~L~iTs~~~  277 (307)
T COG3386         262 FGGPDLNTLYITSARS  277 (307)
T ss_pred             EeCCCcCEEEEEecCC
Confidence            7542  4588886654

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.18  E-value=4.5e-09  Score=108.63  Aligned_cols=203  Identities=18%  Similarity=0.310  Sum_probs=126.0

Q ss_pred             cCcceEEEcc-CCCeeEEE-ecCCEEEEEeC---C----ceeEEEeecCCCcccCCCCCCcccc--ccccCccCccceEE
Q 016318           69 QGPESMAFDP-LGRGPYTG-VADGRILFWDG---L----KWTDFAFTSNNRSELCNPKPIATSY--LKNEHICGRPLGLR  137 (391)
Q Consensus        69 ~gPe~i~~d~-~G~~ly~~-~~~g~I~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~P~gi~  137 (391)
                      ..---||++| +|. +|++ ....+|+|+..   +    .++.++..++    .|-+....|..  +..+.....|.||+
T Consensus       407 sh~Yy~AvsPvdgt-lyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge----~Clp~desCGDGalA~dA~L~~PkGIa  481 (1899)
T KOG4659|consen  407 SHSYYIAVSPVDGT-LYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGE----VCLPADESCGDGALAQDAQLIFPKGIA  481 (1899)
T ss_pred             cceeEEEecCcCce-EEecCCCcceEEEeccCCccccccCeeEEeccCc----CccccccccCcchhcccceeccCCcee
Confidence            3445688887 676 6654 45578888832   1    5666654443    34332221211  13334567799999


Q ss_pred             EecCCCcEEEEECCCCeEEEeCCCCeeEEceec---------------cCCCcccCCcceeecC-CCCEEEEeCCCcccc
Q 016318          138 FDKKTGDLYIADAYFGLMKVGPEGGLATSLATE---------------AEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQR  201 (391)
Q Consensus       138 ~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~---------------~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~  201 (391)
                      +|+ .|.||.+|. .-|-++|.. |.++.+...               ....++.+|.+++++| |+.+|+-|..     
T Consensus       482 ~dk-~g~lYfaD~-t~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n-----  553 (1899)
T KOG4659|consen  482 FDK-MGNLYFADG-TRIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN-----  553 (1899)
T ss_pred             Ecc-CCcEEEecc-cEEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc-----
Confidence            998 899999984 358888865 455554321               1123567999999999 8999999954     


Q ss_pred             hhheeeecccCCCceEEEEeCCCCeEEEec---------------------cCCCCcceEEEccCCCEEEEEeCCCCeEE
Q 016318          202 RNFMQLVFSAEDTGRVLKYDPTTKQTTVLL---------------------RNLQFPNGLSLSKDKSFFVFCEGSVGRLH  260 (391)
Q Consensus       202 ~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~---------------------~~~~~~ngia~~~d~~~l~v~et~~~~I~  260 (391)
                                    -+++.++. ++++++.                     ..+..+..|+++++|. |||+|+...||-
T Consensus       554 --------------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriN  617 (1899)
T KOG4659|consen  554 --------------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRIN  617 (1899)
T ss_pred             --------------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhh
Confidence                          44444433 2222221                     1123467899999998 999999887666


Q ss_pred             EEEeccccCccceeec------------------------c--cCCCCCceEeCCCCCEEEEEcCCC
Q 016318          261 KYWLIGEKAGNLEAFA------------------------I--LPGYPDNVRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       261 ~~~~~g~~~g~~~~~~------------------------~--~~g~p~~i~~d~~G~lwva~~~~~  301 (391)
                      |+..-+. .|+..+++                        .  .-..|..++++++|.+++|..++.
T Consensus       618 rvr~~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~  683 (1899)
T KOG4659|consen  618 RVRKLST-DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNS  683 (1899)
T ss_pred             heEEecc-CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCch
Confidence            6543211 11111111                        0  012477899999999999987753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.12  E-value=3.3e-07  Score=84.99  Aligned_cols=171  Identities=15%  Similarity=0.130  Sum_probs=103.6

Q ss_pred             CeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC-eEEEeC
Q 016318           81 RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGP  159 (391)
Q Consensus        81 ~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~  159 (391)
                      ++++++..++.|..++..........                     .....|.++++++++..+|++....+ |..+|.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~---------------------~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~   60 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTF---------------------PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDL   60 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEE---------------------ECCCCCCceEECCCCCEEEEEECCCCeEEEEEC
Confidence            44567777899999987521111111                     01345778999984445777765544 888998


Q ss_pred             CCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcc
Q 016318          160 EGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPN  238 (391)
Q Consensus       160 ~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~n  238 (391)
                      .+++.......  +   ..+..++++++|+ +|++...                 ++.+..||..+++..........++
T Consensus        61 ~~~~~~~~~~~--~---~~~~~~~~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~  118 (300)
T TIGR03866        61 ATGEVIGTLPS--G---PDPELFALHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPE  118 (300)
T ss_pred             CCCcEEEeccC--C---CCccEEEECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcc
Confidence            88765432111  1   1356788899886 5555432                 4689999988765433333234578


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEE-EEE
Q 016318          239 GLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW-VAI  297 (391)
Q Consensus       239 gia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lw-va~  297 (391)
                      +++++||++.++++......++.++...   ++..........|..+.++++|..+ ++.
T Consensus       119 ~~~~~~dg~~l~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  175 (300)
T TIGR03866       119 GMAVSPDGKIVVNTSETTNMAHFIDTKT---YEIVDNVLVDQRPRFAEFTADGKELWVSS  175 (300)
T ss_pred             eEEECCCCCEEEEEecCCCeEEEEeCCC---CeEEEEEEcCCCccEEEECCCCCEEEEEc
Confidence            9999999997777754444555565432   1111111122357778899999844 553

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.11  E-value=2.2e-07  Score=85.16  Aligned_cols=195  Identities=14%  Similarity=0.189  Sum_probs=120.7

Q ss_pred             cccCcceEEEccCCCeeEEEecC---CEEEE--EeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEe
Q 016318           67 QIQGPESMAFDPLGRGPYTGVAD---GRILF--WDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~---g~I~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d  139 (391)
                      +...|.-++++++++.+|+....   |+|..  +|++  ..+.+...                    ...+.-|.-+++|
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~--------------------~~~g~~p~yvsvd   97 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ--------------------TLPGSPPCYVSVD   97 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc--------------------ccCCCCCeEEEEC
Confidence            35689999999999999998766   44544  3443  22222110                    0112334788999


Q ss_pred             cCCCcEEEEECCCC---eEEEeCCCCeeEEcee---ccC-----CCcccCCcceeecCCCC-EEEEeCCCcccchhheee
Q 016318          140 KKTGDLYIADAYFG---LMKVGPEGGLATSLAT---EAE-----GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       140 ~~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~---~~~-----~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~  207 (391)
                      .++.-|+++.+..|   ++.++.+ |.+.....   ...     .+....+....++|+|+ |++.|=+           
T Consensus        98 ~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------  165 (346)
T COG2706          98 EDGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------  165 (346)
T ss_pred             CCCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------
Confidence            83335788877666   3333334 44333211   111     11122355667899995 5555632           


Q ss_pred             ecccCCCceEEEEeCCCCeEEEec----cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc---cC-
Q 016318          208 VFSAEDTGRVLKYDPTTKQTTVLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LP-  279 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~~~~----~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~---~~-  279 (391)
                            ..+++.|+.+.|++....    .....|.-|+|+|++++.|+...-++.|..+..++. .++++....   +| 
T Consensus       166 ------~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~  238 (346)
T COG2706         166 ------TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPE  238 (346)
T ss_pred             ------CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCcc
Confidence                  468888888877765543    344678999999999999998878888888876653 455554443   33 


Q ss_pred             CCC-----CceEeCCCCCEEEEEcCC
Q 016318          280 GYP-----DNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       280 g~p-----~~i~~d~~G~lwva~~~~  300 (391)
                      .+.     ..|.++++|++..+.+..
T Consensus       239 dF~g~~~~aaIhis~dGrFLYasNRg  264 (346)
T COG2706         239 DFTGTNWAAAIHISPDGRFLYASNRG  264 (346)
T ss_pred             ccCCCCceeEEEECCCCCEEEEecCC
Confidence            121     248899999966655443

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.05  E-value=3.3e-08  Score=91.62  Aligned_cols=193  Identities=19%  Similarity=0.234  Sum_probs=118.9

Q ss_pred             cceEEEecCCCcEEEEECCC-------------CeEEEeCCCCeeEE-ceecc-CCCcccCCcceeecCC------CCEE
Q 016318          133 PLGLRFDKKTGDLYIADAYF-------------GLMKVGPEGGLATS-LATEA-EGVPLRFTNDLDIDDE------GNVY  191 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~~-------------gl~~~d~~~g~~~~-~~~~~-~~~~~~~~~~l~~d~~------G~ly  191 (391)
                      ..++.+|+ .++|||.|.+.             .|+.+|..++++.. +.-+. .-.+..+.+++++|..      +.+|
T Consensus         3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            46788998 89999999763             29999999987533 22111 1124568899999872      5799


Q ss_pred             EEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCC--------------------CcceEEEcc---CCCE
Q 016318          192 FTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ--------------------FPNGLSLSK---DKSF  248 (391)
Q Consensus       192 ~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--------------------~~ngia~~~---d~~~  248 (391)
                      ++|++                 .++|+.||..+++...+.+...                    ...|+++++   |+++
T Consensus        82 ItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~  144 (287)
T PF03022_consen   82 ITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRW  144 (287)
T ss_dssp             EEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-E
T ss_pred             EeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccE
Confidence            99976                 4689999999887766543311                    135778766   8889


Q ss_pred             EEEEeCCCCeEEEEEec---cccCc-------cceeecccCCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCccceeee
Q 016318          249 FVFCEGSVGRLHKYWLI---GEKAG-------NLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFL  318 (391)
Q Consensus       249 l~v~et~~~~I~~~~~~---g~~~g-------~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~  318 (391)
                      ||+.-..+.+++++..+   .+...       ..+.+.+.++..+++++|++|++|.+....                  
T Consensus       145 LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~------------------  206 (287)
T PF03022_consen  145 LYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQ------------------  206 (287)
T ss_dssp             EEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCC------------------
T ss_pred             EEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCC------------------
Confidence            99998888889998743   11111       112222333456899999999999998764                  


Q ss_pred             eecCccceeeeEEeecCccceEEEEECCCC-----CEEEEEeCCCCCeeeceeEEEEEC---CEEEEecCCCC
Q 016318          319 LKLPISAKTHYLIHVGGRLHAMAVKYSPEG-----KILQVLEDSKGKVVKAISEVEEKD---GKLWMGSVLMP  383 (391)
Q Consensus       319 ~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g-----~~~~~~~~~~g~~~~~is~~~~~~---g~Lylgs~~~~  383 (391)
                                          ..|.+.++++     +.-...+++..  ..++.++....   |+||+-+-.-+
T Consensus       207 --------------------~aI~~w~~~~~~~~~~~~~l~~d~~~--l~~pd~~~i~~~~~g~L~v~snrl~  257 (287)
T PF03022_consen  207 --------------------NAIGCWDPDGPYTPENFEILAQDPRT--LQWPDGLKIDPEGDGYLWVLSNRLQ  257 (287)
T ss_dssp             --------------------TEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE-S--
T ss_pred             --------------------CeEEEEeCCCCcCccchheeEEcCce--eeccceeeeccccCceEEEEECcch
Confidence                                2366677776     43334454432  33455565544   99999775443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=8.1e-08  Score=93.05  Aligned_cols=187  Identities=19%  Similarity=0.204  Sum_probs=131.0

Q ss_pred             cCcceEEEccCCCeeEEEecC-CEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVAD-GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~-g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ..|.++++++.|+.+|+...+ +.|..++...-+....                     ......|.+++++++++.+||
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~---------------------~~vG~~P~~~~~~~~~~~vYV  132 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS---------------------IPVGLGPVGLAVDPDGKYVYV  132 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE---------------------eeeccCCceEEECCCCCEEEE
Confidence            689999999999878877654 7788887441111110                     011337999999996778999


Q ss_pred             EECC--CC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          148 ADAY--FG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       148 ~d~~--~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      ++..  .+ +.++|..++++... .. .|.   .|.+++++++|+ +|++++.                 ++++..+|.+
T Consensus       133 ~n~~~~~~~vsvid~~t~~~~~~-~~-vG~---~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~  190 (381)
T COG3391         133 ANAGNGNNTVSVIDAATNKVTAT-IP-VGN---TPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTS  190 (381)
T ss_pred             EecccCCceEEEEeCCCCeEEEE-Ee-cCC---CcceEEECCCCCeEEEEecC-----------------CCeEEEEeCC
Confidence            9995  33 99999998865544 21 222   468999999997 9999954                 5789999987


Q ss_pred             CCeEEE-----eccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeCCCCCE-EE
Q 016318          224 TKQTTV-----LLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEF-WV  295 (391)
Q Consensus       224 ~~~~~~-----~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~l-wv  295 (391)
                      +.....     .......|.++++++|++.+|+++..+  +.+.+++...........-.... .|.++..+++|.. |+
T Consensus       191 ~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv  269 (381)
T COG3391         191 GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYV  269 (381)
T ss_pred             CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEE
Confidence            766653     234456899999999999999999877  58888875542111111111112 5889999999994 45


Q ss_pred             EEcC
Q 016318          296 AIHC  299 (391)
Q Consensus       296 a~~~  299 (391)
                      +...
T Consensus       270 ~~~~  273 (381)
T COG3391         270 ANSQ  273 (381)
T ss_pred             EecC
Confidence            4333

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.00  E-value=9e-07  Score=82.04  Aligned_cols=188  Identities=15%  Similarity=0.105  Sum_probs=115.6

Q ss_pred             cCcceEEEccCCCeeEE-EecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           69 QGPESMAFDPLGRGPYT-GVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~-~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ..|.+++++++|+.+|+ +..++.|..++...........                     ....|..++++++++.+|+
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~l~~   89 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---------------------SGPDPELFALHPNGKILYI   89 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---------------------CCCCccEEEECCCCCEEEE
Confidence            35788999999987765 4567889888876221111110                     1233567788884445778


Q ss_pred             EECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          148 ADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       148 ~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      +... +.|..+|..+++......  .+   ..+.+++++++|.++++.+..                ...+..||..+++
T Consensus        90 ~~~~~~~l~~~d~~~~~~~~~~~--~~---~~~~~~~~~~dg~~l~~~~~~----------------~~~~~~~d~~~~~  148 (300)
T TIGR03866        90 ANEDDNLVTVIDIETRKVLAEIP--VG---VEPEGMAVSPDGKIVVNTSET----------------TNMAHFIDTKTYE  148 (300)
T ss_pred             EcCCCCeEEEEECCCCeEEeEee--CC---CCcceEEECCCCCEEEEEecC----------------CCeEEEEeCCCCe
Confidence            7654 348889988754321111  11   246789999999877765321                1245667887766


Q ss_pred             EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccC------CCCCceEeCCCCCE-EEEEc
Q 016318          227 TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILP------GYPDNVRTNEKGEF-WVAIH  298 (391)
Q Consensus       227 ~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~------g~p~~i~~d~~G~l-wva~~  298 (391)
                      ..........|+.+++++|++.++++....+.|..+++...+.  ...+. ..+      -.|.+++++++|+. |++..
T Consensus       149 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~  226 (300)
T TIGR03866       149 IVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG  226 (300)
T ss_pred             EEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence            5432222346788999999998887755567898888764321  11111 111      13567889999984 66654


Q ss_pred             CC
Q 016318          299 CR  300 (391)
Q Consensus       299 ~~  300 (391)
                      ..
T Consensus       227 ~~  228 (300)
T TIGR03866       227 PA  228 (300)
T ss_pred             CC
Confidence            43

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.92  E-value=3.7e-08  Score=95.05  Aligned_cols=142  Identities=23%  Similarity=0.331  Sum_probs=98.2

Q ss_pred             ccCccceEEEecCCCcEEEEECC------------C-CeEEEeCC--CCee---EEceeccCCCcccCCcceeecCCCCE
Q 016318          129 ICGRPLGLRFDKKTGDLYIADAY------------F-GLMKVGPE--GGLA---TSLATEAEGVPLRFTNDLDIDDEGNV  190 (391)
Q Consensus       129 ~~g~P~gi~~d~~~g~L~V~d~~------------~-gl~~~d~~--~g~~---~~~~~~~~~~~~~~~~~l~~d~~G~l  190 (391)
                      ....|.+|++|+ +|+|||++..            . .|++++..  .|+.   +.+..     .+..|++|++.++| |
T Consensus        12 ~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-----~l~~p~Gi~~~~~G-l   84 (367)
T TIGR02604        12 LLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-----ELSMVTGLAVAVGG-V   84 (367)
T ss_pred             ccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-----CCCCccceeEecCC-E
Confidence            357899999998 8999999741            1 36666543  2332   33332     24579999999999 9


Q ss_pred             EEEeCCCcccchhheeeecccCCCceEEEE-eCC-----CCeEEEeccCC--------CCcceEEEccCCCEEEEEeCC-
Q 016318          191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKY-DPT-----TKQTTVLLRNL--------QFPNGLSLSKDKSFFVFCEGS-  255 (391)
Q Consensus       191 y~td~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~-----~~~~~~~~~~~--------~~~ngia~~~d~~~l~v~et~-  255 (391)
                      |+++.                   .+|+++ |.+     +++.+++.+++        ..+++++++|||. ||++... 
T Consensus        85 yV~~~-------------------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~  144 (367)
T TIGR02604        85 YVATP-------------------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNT  144 (367)
T ss_pred             EEeCC-------------------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccC
Confidence            99874                   367777 332     12444444332        3588999999997 9997652 


Q ss_pred             ------------------CCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318          256 ------------------VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       256 ------------------~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                                        .++|+|++.+|   ++.++++.--..|.++++|++|++|++.+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~g~i~r~~pdg---~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       145 LASKVTRPGTSDESRQGLGGGLFRYNPDG---GKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCceeccCCCccCcccccCceEEEEecCC---CeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence                              14689998766   4467776522358899999999999987643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=2.5e-06  Score=82.70  Aligned_cols=233  Identities=15%  Similarity=0.208  Sum_probs=149.2

Q ss_pred             CcceEEEccCCCeeEEEecCCE-EEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGR-ILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~-I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      +|.+++++++|..+|+...... +..++.. ...+.         |.          .......|.|+.+.+.+.++||.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~---------~~----------~~~g~~~p~~i~v~~~~~~vyv~   91 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVT---------QS----------LSVGGVYPAGVAVNPAGNKVYVT   91 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-cceee---------ee----------ccCCCccccceeeCCCCCeEEEe
Confidence            8999999999966777664443 3333332 11111         00          00112679999998856669999


Q ss_pred             ECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          149 DAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       149 d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      +.. +.+..+|..+.++.....  -|   ..|.+++++++| .+|++++..               .++.+..+|+.+++
T Consensus        92 ~~~~~~v~vid~~~~~~~~~~~--vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~  151 (381)
T COG3391          92 TGDSNTVSVIDTATNTVLGSIP--VG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNK  151 (381)
T ss_pred             cCCCCeEEEEcCcccceeeEee--ec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCe
Confidence            876 559999966554332221  12   279999999987 899999641               25789999999887


Q ss_pred             EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcc--ceeecccCCCCCceEeCCCCC-EEEEEcCCC--
Q 016318          227 TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN--LEAFAILPGYPDNVRTNEKGE-FWVAIHCRR--  301 (391)
Q Consensus       227 ~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~--~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~--  301 (391)
                      ..........|.+++++|+|+.+|+++...++|..++..+....+  ..........|..+.++++|+ +|++.....  
T Consensus       152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~  231 (381)
T COG3391         152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN  231 (381)
T ss_pred             EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence            766544444789999999999999999889999999966542221  000112224689999999999 888876641  


Q ss_pred             chhhhhhhcCccceeeeee-cCccceeeeEEeecCccceEEEEECCCCCEEEEEeCC
Q 016318          302 SLYSHLMALYPKIRHFLLK-LPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDS  357 (391)
Q Consensus       302 ~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~  357 (391)
                      .+..    .....+..... ++.          +.. ....+.++|+|+.+++.+..
T Consensus       232 ~v~~----id~~~~~v~~~~~~~----------~~~-~~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         232 NVLK----IDTATGNVTATDLPV----------GSG-APRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             eEEE----EeCCCceEEEecccc----------ccC-CCCceeECCCCCEEEEEecC
Confidence            2111    11111122211 111          111 24457788999988887655

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.86  E-value=1e-07  Score=92.07  Aligned_cols=163  Identities=18%  Similarity=0.236  Sum_probs=100.6

Q ss_pred             cchhccccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCc
Q 016318           53 DKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR  132 (391)
Q Consensus        53 ~~~~l~~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  132 (391)
                      +++++.+.+.+..+  ..-..+.+|.+|. +|+++.+| +.+++..+.+.+...+..                   -.-+
T Consensus       151 g~~~v~~~r~ll~d--~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~-------------------~dk~  207 (671)
T COG3292         151 GREAVKDVRPLLKD--TPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPP-------------------LDKA  207 (671)
T ss_pred             hhhhccCccccccC--ccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCc-------------------chhh
Confidence            34444444433332  2334678888888 99999997 899987633322211100                   0011


Q ss_pred             cceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccC
Q 016318          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      ...+..|. .++|||++ +.|++..++.+-++.-.   ....+.....-+..|.+|++||++.                 
T Consensus       208 I~al~~d~-qg~LWVGT-dqGv~~~e~~G~~~sn~---~~~lp~~~I~ll~qD~qG~lWiGTe-----------------  265 (671)
T COG3292         208 INALIADV-QGRLWVGT-DQGVYLQEAEGWRASNW---GPMLPSGNILLLVQDAQGELWIGTE-----------------  265 (671)
T ss_pred             HHHHHHHh-cCcEEEEe-ccceEEEchhhcccccc---CCCCcchheeeeecccCCCEEEeec-----------------
Confidence            23445565 79999996 67999999887333222   2222333455667788999999985                 


Q ss_pred             CCceEEEEeCCCCeEEEecc----CCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          213 DTGRVLKYDPTTKQTTVLLR----NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~----~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                        .++.++....+.+.....    +....|++..+.||+ +|+..  .++|++|...
T Consensus       266 --nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t--~~giv~~~~a  317 (671)
T COG3292         266 --NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGT--YGGIVRYLTA  317 (671)
T ss_pred             --ccceeEecCCCCccccccccCCccccccceeeccCCC-Eeeec--cCceEEEecc
Confidence              357777665555443322    223457888999999 99874  4678888643

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.84  E-value=1.3e-07  Score=94.37  Aligned_cols=187  Identities=18%  Similarity=0.199  Sum_probs=126.0

Q ss_pred             CcceEEEcc-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           70 GPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        70 gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      -|-+|.+|- +..++|++..+..|-+-...  .-+++.                      ....+.|-||++|....++|
T Consensus      1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~----------------------n~~L~SPEGiAVDh~~Rn~y 1083 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIV----------------------NSGLISPEGIAVDHIRRNMY 1083 (1289)
T ss_pred             eeeeeecccccceEEEeecCCCccccccccCCCCceee----------------------cccCCCccceeeeeccceee
Confidence            355666774 34466777777766665433  222221                      11267899999997677899


Q ss_pred             EEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          147 IADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       147 V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      -+|+... |-+-..++.+.+.+...    .+..|.+|++|+ .|+||++|+.               +.+-.|-+.+.++
T Consensus      1084 wtDS~lD~IevA~LdG~~rkvLf~t----dLVNPR~iv~D~~rgnLYwtDWn---------------RenPkIets~mDG 1144 (1289)
T KOG1214|consen 1084 WTDSVLDKIEVALLDGSERKVLFYT----DLVNPRAIVVDPIRGNLYWTDWN---------------RENPKIETSSMDG 1144 (1289)
T ss_pred             eeccccchhheeecCCceeeEEEee----cccCcceEEeecccCceeecccc---------------ccCCcceeeccCC
Confidence            9998643 44444444444544332    245799999998 7899999965               2234555555554


Q ss_pred             CeEEEe-ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCC
Q 016318          225 KQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       225 ~~~~~~-~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~  301 (391)
                      +..+++ .+++..|||+.|+|..+.|.+.+..++|+-....+|.  ++..++.+| -+|-+|.-+.+. +|-+.+...
T Consensus      1145 ~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i~~~L-qYPF~itsy~~~-fY~TDWk~n 1218 (1289)
T KOG1214|consen 1145 ENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVIQNNL-QYPFSITSYADH-FYHTDWKRN 1218 (1289)
T ss_pred             ccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC--cchhhhhcc-cCceeeeecccc-ceeeccccC
Confidence            444444 4678899999999999999999999999999887763  555555554 378888887776 776766543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.74  E-value=2e-06  Score=81.73  Aligned_cols=173  Identities=20%  Similarity=0.266  Sum_probs=102.4

Q ss_pred             ccCcceEEEccCCCeeEEEecCCEEEEEeCC-ce-eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC---C
Q 016318           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGL-KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK---T  142 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~---~  142 (391)
                      +..|.+|++.+||+ +|++...|+|++++.+ .. ..+.....    .            ......-.+|++++++   +
T Consensus         1 L~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~~~~~v~~~~~----v------------~~~~~~gllgia~~p~f~~n   63 (331)
T PF07995_consen    1 LNNPRSMAFLPDGR-LLVAERSGRIWVVDKDGSLKTPVADLPE----V------------FADGERGLLGIAFHPDFASN   63 (331)
T ss_dssp             ESSEEEEEEETTSC-EEEEETTTEEEEEETTTEECEEEEE-TT----T------------BTSTTBSEEEEEE-TTCCCC
T ss_pred             CCCceEEEEeCCCc-EEEEeCCceEEEEeCCCcCcceeccccc----c------------cccccCCcccceeccccCCC
Confidence            35799999999998 7888889999999955 32 23332211    0            0011234789999982   4


Q ss_pred             CcEEEEECCC---------CeEEEeCCCC--e---eEEceeccCC--CcccCCcceeecCCCCEEEEeCCCcccchhhee
Q 016318          143 GDLYIADAYF---------GLMKVGPEGG--L---ATSLATEAEG--VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       143 g~L~V~d~~~---------gl~~~d~~~g--~---~~~~~~~~~~--~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~  206 (391)
                      +.|||+-...         .|.++..+.+  .   .+.+......  ........|++++||.||++......  .+...
T Consensus        64 ~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~  141 (331)
T PF07995_consen   64 GYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQ  141 (331)
T ss_dssp             -EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGC
T ss_pred             CEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccc
Confidence            7899986532         3666655433  2   2223222111  22335567999999999999633211  00011


Q ss_pred             eecccCCCceEEEEeCCCC-------------eEEEeccCCCCcceEEEccC-CCEEEEEeCCCC---eEEEE
Q 016318          207 LVFSAEDTGRVLKYDPTTK-------------QTTVLLRNLQFPNGLSLSKD-KSFFVFCEGSVG---RLHKY  262 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~~-------------~~~~~~~~~~~~ngia~~~d-~~~l~v~et~~~---~I~~~  262 (391)
                      +  .....|.|+|+++.+.             ..+++..++..|.+++++|. |+ ||++|-...   .|.++
T Consensus       142 ~--~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~~~dein~i  211 (331)
T PF07995_consen  142 D--PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPDGWDEINRI  211 (331)
T ss_dssp             S--TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE
T ss_pred             c--cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCCCCcEEEEe
Confidence            1  1233688999997654             34566778889999999999 66 999986543   45554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.70  E-value=1.7e-05  Score=75.12  Aligned_cols=229  Identities=14%  Similarity=0.118  Sum_probs=121.1

Q ss_pred             CEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC---------CCC-eEEEeC
Q 016318           90 GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA---------YFG-LMKVGP  159 (391)
Q Consensus        90 g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~---------~~g-l~~~d~  159 (391)
                      ++|..+|.+..+.....                     ..+.+|.++ +++++..||||..         ... |..+|+
T Consensus        27 ~~v~ViD~~~~~v~g~i---------------------~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~   84 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMT---------------------DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDP   84 (352)
T ss_pred             ceEEEEECCCCEEEEEE---------------------EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            78999998754443222                     236789997 9987778999988         333 899999


Q ss_pred             CCCeeEE-ceecc--CCCcccCCcceeecCCCC-EEEEeCCCc--cc-----chhhe---------eeecccCCCceEEE
Q 016318          160 EGGLATS-LATEA--EGVPLRFTNDLDIDDEGN-VYFTDSSTN--YQ-----RRNFM---------QLVFSAEDTGRVLK  219 (391)
Q Consensus       160 ~~g~~~~-~~~~~--~~~~~~~~~~l~~d~~G~-ly~td~~~~--~~-----~~~~~---------~~~~~~~~~g~l~~  219 (391)
                      ++.+... +....  ...-...++.+++++||+ +|+++.+..  ..     .+..+         ......+.+..+.|
T Consensus        85 ~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~  164 (352)
T TIGR02658        85 QTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHC  164 (352)
T ss_pred             ccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEe
Confidence            9876442 21110  111235677899999994 888874311  00     00111         01111111112222


Q ss_pred             EeCCC--------CeEEE----eccC---CCCcceEEEcc-CCCEEEEEeCCCCeEEEEEeccccCccceeecc-----c
Q 016318          220 YDPTT--------KQTTV----LLRN---LQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-----L  278 (391)
Q Consensus       220 ~d~~~--------~~~~~----~~~~---~~~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-----~  278 (391)
                      .|.+.        |+..+    +.+.   .-+.+. .+.+ ||+.+|++..  +.|+.+++.+......+.+..     .
T Consensus       165 ~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~  241 (352)
T TIGR02658       165 RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEK  241 (352)
T ss_pred             ecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeecccccc
Confidence            22211        11111    1111   111222 3345 8888888744  899999987654333333221     1


Q ss_pred             -CC-CCCc---eEeCCCCC-EEEEEcCCC---------chhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEE
Q 016318          279 -PG-YPDN---VRTNEKGE-FWVAIHCRR---------SLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVK  343 (391)
Q Consensus       279 -~g-~p~~---i~~d~~G~-lwva~~~~~---------~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~  343 (391)
                       .| .|.+   ++++++|+ +||++....         .+    .......++.+.+++..            ....-++
T Consensus       242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V----~ViD~~t~kvi~~i~vG------------~~~~~ia  305 (352)
T TIGR02658       242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFL----FVVDAKTGKRLRKIELG------------HEIDSIN  305 (352)
T ss_pred             ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEE----EEEECCCCeEEEEEeCC------------CceeeEE
Confidence             01 3444   99998876 999664321         11    11133455556655542            2345677


Q ss_pred             ECCCCC-EEEEEeCCCC
Q 016318          344 YSPEGK-ILQVLEDSKG  359 (391)
Q Consensus       344 ~d~~g~-~~~~~~~~~g  359 (391)
                      ++++|+ .++..+..++
T Consensus       306 vS~Dgkp~lyvtn~~s~  322 (352)
T TIGR02658       306 VSQDAKPLLYALSTGDK  322 (352)
T ss_pred             ECCCCCeEEEEeCCCCC
Confidence            888888 6665543333

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.64  E-value=1.2e-05  Score=77.41  Aligned_cols=158  Identities=16%  Similarity=0.204  Sum_probs=96.7

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      +.++++.+||+.+|+.+.+|.|.++|....+.++..                     ..+..|.|+++++++..+|+++.
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i---------------------~~G~~~~~i~~s~DG~~~~v~n~   97 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI---------------------KVGGNPRGIAVSPDGKYVYVANY   97 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE---------------------E-SSEEEEEEE--TTTEEEEEEE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE---------------------ecCCCcceEEEcCCCCEEEEEec
Confidence            456788999999999999999999998743333322                     13677999999985455788887


Q ss_pred             CC-CeEEEeCCCCeeE-Eceec-cC-CCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          151 YF-GLMKVGPEGGLAT-SLATE-AE-GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       151 ~~-gl~~~d~~~g~~~-~~~~~-~~-~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      .. .+..+|.++.+.. .+... .. ..+-..+.+|...+....|+..-                ...+.++..|..+.+
T Consensus        98 ~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l----------------kd~~~I~vVdy~d~~  161 (369)
T PF02239_consen   98 EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL----------------KDTGEIWVVDYSDPK  161 (369)
T ss_dssp             ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE----------------TTTTEEEEEETTTSS
T ss_pred             CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE----------------ccCCeEEEEEecccc
Confidence            64 4888998876433 22211 11 01122344566666666565541                235788888865542


Q ss_pred             E--EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          227 T--TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       227 ~--~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      .  ....+-..+|.+..++|++++++++....+.|-.++.+
T Consensus       162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~  202 (369)
T PF02239_consen  162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK  202 (369)
T ss_dssp             CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred             ccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence            2  12234456899999999999999987777888888754

...

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.63  E-value=2.2e-05  Score=75.28  Aligned_cols=197  Identities=16%  Similarity=0.169  Sum_probs=127.3

Q ss_pred             cccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      .|.-..-.++++.++|+.+|++++||.|..|+...-.....                   .-+.......+|+.+. .+.
T Consensus       317 ~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~-------------------~g~~h~nqI~~~~~~~-~~~  376 (603)
T KOG0318|consen  317 SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL-------------------AGKGHTNQIKGMAASE-SGE  376 (603)
T ss_pred             cccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc-------------------ccccccceEEEEeecC-CCc
Confidence            45455677889999999999999999999998762111000                   0011234566777775 688


Q ss_pred             EEEEECCCCeEEEeCCCCeeEEce-eccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 LYIADAYFGLMKVGPEGGLATSLA-TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~~~~-~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      |+.+.+...|.+++...+...... -..    ...|-++++.++|.+-+...-                  ..|..+.-.
T Consensus       377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~l----g~QP~~lav~~d~~~avv~~~------------------~~iv~l~~~  434 (603)
T KOG0318|consen  377 LFTIGWDDTLRVISLKDNGYTKSEVVKL----GSQPKGLAVLSDGGTAVVACI------------------SDIVLLQDQ  434 (603)
T ss_pred             EEEEecCCeEEEEecccCcccccceeec----CCCceeEEEcCCCCEEEEEec------------------CcEEEEecC
Confidence            998888778888876544322110 011    235779999998754443311                  245555433


Q ss_pred             CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCch
Q 016318          224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      ++-.+.  .-...+.++|++||++.+.|. -..++|+.|.+.|.............+-+..|+.+++|.++++....+.+
T Consensus       435 ~~~~~~--~~~y~~s~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv  511 (603)
T KOG0318|consen  435 TKVSSI--PIGYESSAVAVSPDGSEVAVG-GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV  511 (603)
T ss_pred             Ccceee--ccccccceEEEcCCCCEEEEe-cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence            322221  223467899999999988887 44567999999986432222333456778899999999999887776665


Q ss_pred             hhh
Q 016318          304 YSH  306 (391)
Q Consensus       304 ~~~  306 (391)
                      .++
T Consensus       512 v~y  514 (603)
T KOG0318|consen  512 VLY  514 (603)
T ss_pred             EEE
Confidence            543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.56  E-value=0.00013  Score=65.81  Aligned_cols=182  Identities=14%  Similarity=0.104  Sum_probs=115.2

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC-
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA-  150 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~-  150 (391)
                      ..+.+.++++.++++..+|.|..|+..........                    ......+.++.+++ +++++++.. 
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~--------------------~~~~~~i~~~~~~~-~~~~~~~~~~  113 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTL--------------------TGHTSYVSSVAFSP-DGRILSSSSR  113 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE--------------------eccCCcEEEEEEcC-CCCEEEEecC
Confidence            47888888887999999999999977621111110                    01123567888887 567777766 


Q ss_pred             CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe
Q 016318          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL  230 (391)
Q Consensus       151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  230 (391)
                      ...+..+|..+++........    ...+..+++++++.++++...                 ++.+..||..+++....
T Consensus       114 ~~~i~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~  172 (289)
T cd00200         114 DKTIKVWDVETGKCLTTLRGH----TDWVNSVAFSPDGTFVASSSQ-----------------DGTIKLWDLRTGKCVAT  172 (289)
T ss_pred             CCeEEEEECCCcEEEEEeccC----CCcEEEEEEcCcCCEEEEEcC-----------------CCcEEEEEcccccccee
Confidence            445888888755433222211    124678888888877776532                 46888899876654333


Q ss_pred             ccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEc
Q 016318          231 LRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       231 ~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~  298 (391)
                      ... ......++++++++.++++.. .+.|..+++...  .....+...++....+..++++.++++..
T Consensus       173 ~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         173 LTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTG--KCLGTLRGHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             EecCccccceEEECCCcCEEEEecC-CCcEEEEECCCC--ceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence            322 235678999999987777744 778888886531  11122212233456788888877777654

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.56  E-value=3e-05  Score=81.34  Aligned_cols=193  Identities=18%  Similarity=0.271  Sum_probs=123.8

Q ss_pred             cccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      .+..|-.++..+||. +|+|..+ -|.|+.++ ++.++.......                   -..-.-|+++|-+|.|
T Consensus       363 ~L~aPvala~a~DGS-l~VGDfN-yIRRI~~dg~v~tIl~L~~t~-------------------~sh~Yy~AvsPvdgtl  421 (1899)
T KOG4659|consen  363 SLFAPVALAYAPDGS-LIVGDFN-YIRRISQDGQVSTILTLGLTD-------------------TSHSYYIAVSPVDGTL  421 (1899)
T ss_pred             eeeceeeEEEcCCCc-EEEccch-heeeecCCCceEEEEEecCCC-------------------ccceeEEEecCcCceE
Confidence            466899999999999 9999876 48888877 666665442110                   1222467888888999


Q ss_pred             EEEECC-CCeEEEeCCC-----CeeEEceec----------------cCCCcccCCcceeecCCCCEEEEeCCCcccchh
Q 016318          146 YIADAY-FGLMKVGPEG-----GLATSLATE----------------AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRN  203 (391)
Q Consensus       146 ~V~d~~-~gl~~~d~~~-----g~~~~~~~~----------------~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~  203 (391)
                      ||.|.. +.|+++..-.     +..+.++..                ....++.+|.+|++|++|++||+|..       
T Consensus       422 yvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-------  494 (1899)
T KOG4659|consen  422 YVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-------  494 (1899)
T ss_pred             EecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------
Confidence            999987 4488884321     122333210                01135789999999999999999954       


Q ss_pred             heeeecccCCCceEEEEeCCCCeEEEec--------------------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          204 FMQLVFSAEDTGRVLKYDPTTKQTTVLL--------------------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       204 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~--------------------~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                                  ++-..|. +|.+..+.                    -.+.-|..+|++|=.+.|||-|+  +-|++++
T Consensus       495 ------------~IR~iD~-~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit  559 (1899)
T KOG4659|consen  495 ------------RIRVIDT-TGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRIT  559 (1899)
T ss_pred             ------------EEEEecc-CceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEc
Confidence                        2333332 23332221                    12446899999996666999874  5777776


Q ss_pred             eccc---cCccceeecccCC---------------CCCceEeCCCCCEEEEEcCCCch
Q 016318          264 LIGE---KAGNLEAFAILPG---------------YPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       264 ~~g~---~~g~~~~~~~~~g---------------~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      ..+.   -.|..-. .++++               .+..|++.++|-+||+...++.+
T Consensus       560 ~~~rV~Ii~GrP~h-C~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rri  616 (1899)
T KOG4659|consen  560 VVHRVRIILGRPTH-CDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRI  616 (1899)
T ss_pred             cCccEEEEcCCccc-cccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhh
Confidence            5432   0111000 01111               35789999999999998776553

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.56  E-value=0.00018  Score=64.86  Aligned_cols=184  Identities=18%  Similarity=0.208  Sum_probs=111.4

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      ...+++++++++.++++..+|.|..|+...........                    ........+.+.+++..++++.
T Consensus        11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~l~~~~   70 (289)
T cd00200          11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--------------------GHTGPVRDVAASADGTYLASGS   70 (289)
T ss_pred             CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe--------------------cCCcceeEEEECCCCCEEEEEc
Confidence            44578899999988899989999988765211111000                    0012224778887333566665


Q ss_pred             CCCCeEEEeCCCCee-EEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          150 AYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ....+..++.++++. ..+. ..    ...+..+...++++++++...                 +|.+..||..+++..
T Consensus        71 ~~~~i~i~~~~~~~~~~~~~-~~----~~~i~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~  128 (289)
T cd00200          71 SDKTIRLWDLETGECVRTLT-GH----TSYVSSVAFSPDGRILSSSSR-----------------DKTIKVWDVETGKCL  128 (289)
T ss_pred             CCCeEEEEEcCcccceEEEe-cc----CCcEEEEEEcCCCCEEEEecC-----------------CCeEEEEECCCcEEE
Confidence            555588888876432 2221 11    124667888888887777642                 478999998866554


Q ss_pred             Eecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEc
Q 016318          229 VLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIH  298 (391)
Q Consensus       229 ~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~  298 (391)
                      .... .......+++++++++++.+ ...+.|..+++...+  ....+....+....+..+++|+ ++++..
T Consensus       129 ~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  197 (289)
T cd00200         129 TTLRGHTDWVNSVAFSPDGTFVASS-SQDGTIKLWDLRTGK--CVATLTGHTGEVNSVAFSPDGEKLLSSSS  197 (289)
T ss_pred             EEeccCCCcEEEEEEcCcCCEEEEE-cCCCcEEEEEccccc--cceeEecCccccceEEECCCcCEEEEecC
Confidence            4333 23356789999998855544 446788888865321  1222222223466788889885 555443

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.53  E-value=1.6e-06  Score=86.79  Aligned_cols=178  Identities=17%  Similarity=0.122  Sum_probs=123.2

Q ss_pred             CCCCCCccchhccccc--eeccccccCcceEEEccCC-CeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCcc
Q 016318           46 LIPTVKDDKNLLQNSE--IKFLNQIQGPESMAFDPLG-RGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIAT  121 (391)
Q Consensus        46 ~~~~~~~~~~~l~~~~--~~~~~~~~gPe~i~~d~~G-~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  121 (391)
                      ...+.......|..+|  .+.--++..||+||+|.-+ +++|+++...+|-.-..+ +.+....                
T Consensus      1043 Dv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf---------------- 1106 (1289)
T KOG1214|consen 1043 DVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLF---------------- 1106 (1289)
T ss_pred             ecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEE----------------
Confidence            3334333334454433  3445568899999999654 568888876655443332 1111111                


Q ss_pred             ccccccCccCccceEEEecCCCcEEEEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCC
Q 016318          122 SYLKNEHICGRPLGLRFDKKTGDLYIADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSST  197 (391)
Q Consensus       122 ~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~  197 (391)
                           ....-.|.+|.+|+-.++||-.|+.+.   |-+.+.++...+.+...    .+..||++.+|+.. .|-+.|.+ 
T Consensus      1107 -----~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~----DigLPNGLtfdpfs~~LCWvDAG- 1176 (1289)
T KOG1214|consen 1107 -----YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINT----DIGLPNGLTFDPFSKLLCWVDAG- 1176 (1289)
T ss_pred             -----eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeec----ccCCCCCceeCcccceeeEEecC-
Confidence                 111456899999987899999999754   77777777666665443    24579999999965 68788866 


Q ss_pred             cccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318          198 NYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       198 ~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~  267 (391)
                                      +.|+-+..++.-..+++...+++|-+|.-..  +.+|+++...++|..+++.+.
T Consensus      1177 ----------------t~rleC~~p~g~gRR~i~~~LqYPF~itsy~--~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1177 ----------------TKRLECTLPDGTGRRVIQNNLQYPFSITSYA--DHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred             ----------------CcceeEecCCCCcchhhhhcccCceeeeecc--ccceeeccccCceEEeecccc
Confidence                            5689888887666778889999999887544  449999999999999987653

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.52  E-value=2.9e-05  Score=70.06  Aligned_cols=193  Identities=10%  Similarity=0.071  Sum_probs=103.5

Q ss_pred             ccCcceEEEccCCCeeEEE-ecCCEEEEEeCC-ce-eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           68 IQGPESMAFDPLGRGPYTG-VADGRILFWDGL-KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~-~~~g~I~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ...+.+|+++++.+.+|+- ...+.|+.++.+ ++ +.+..                      ...+.+-||++.. ++.
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l----------------------~g~~D~EgI~y~g-~~~   77 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL----------------------DGFGDYEGITYLG-NGR   77 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-----------------------SS-SSEEEEEE-S-TTE
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC----------------------CCCCCceeEEEEC-CCE
Confidence            3458899999986656654 456889999876 22 22211                      1146788999986 677


Q ss_pred             EEEEECCCC-eEEEeC--CCCee-----EEceeccCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeeecccCCCc
Q 016318          145 LYIADAYFG-LMKVGP--EGGLA-----TSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       145 L~V~d~~~g-l~~~d~--~~g~~-----~~~~~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      +.+++...+ |+.++.  .+..+     +.+........-....+++.|+. +++|++-..                ...
T Consensus        78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~----------------~P~  141 (248)
T PF06977_consen   78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER----------------KPK  141 (248)
T ss_dssp             EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES----------------SSE
T ss_pred             EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC----------------CCh
Confidence            777775444 766665  33222     11211122122345789999996 567777521                123


Q ss_pred             eEEEEeC--CCCeEEEec--------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC------
Q 016318          216 RVLKYDP--TTKQTTVLL--------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP------  279 (391)
Q Consensus       216 ~l~~~d~--~~~~~~~~~--------~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~------  279 (391)
                      +|+.++.  ......+..        ..+..+.+++++|....+|+-...+.+|..++.+|...+....-....      
T Consensus       142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~  221 (248)
T PF06977_consen  142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDI  221 (248)
T ss_dssp             EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS--
T ss_pred             hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCccccc
Confidence            5666664  222222211        123468899999998889999888999999987664221111111111      


Q ss_pred             CCCCceEeCCCCCEEEEEcC
Q 016318          280 GYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       280 g~p~~i~~d~~G~lwva~~~  299 (391)
                      -.|.||++|++|++||+.-.
T Consensus       222 ~QpEGIa~d~~G~LYIvsEp  241 (248)
T PF06977_consen  222 PQPEGIAFDPDGNLYIVSEP  241 (248)
T ss_dssp             -SEEEEEE-TT--EEEEETT
T ss_pred             CCccEEEECCCCCEEEEcCC
Confidence            14789999999999998643

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.52  E-value=2.6e-06  Score=82.54  Aligned_cols=141  Identities=18%  Similarity=0.204  Sum_probs=90.4

Q ss_pred             CccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecc
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~  210 (391)
                      .+...+.+|. .|+|||++ .+||++||..++++-.+......   ...+.++.|..|.+|+++.               
T Consensus       165 ~~V~aLv~D~-~g~lWvgT-~dGL~~fd~~~gkalql~s~~~d---k~I~al~~d~qg~LWVGTd---------------  224 (671)
T COG3292         165 TPVVALVFDA-NGRLWVGT-PDGLSYFDAGRGKALQLASPPLD---KAINALIADVQGRLWVGTD---------------  224 (671)
T ss_pred             ccceeeeeec-cCcEEEec-CCcceEEccccceEEEcCCCcch---hhHHHHHHHhcCcEEEEec---------------
Confidence            3445788888 89999995 67999999999877665432111   3578889999999999984               


Q ss_pred             cCCCceEEEEeCCCCeEEEeccCCCCcce----EEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC--CCCc
Q 016318          211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNG----LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG--YPDN  284 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ng----ia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g--~p~~  284 (391)
                          -+++.+++++-+..-.  +...|.+    +.-+.+|. +|++ |. +.++|+.+.......... ...++  ...+
T Consensus       225 ----qGv~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~-lWiG-Te-nGl~r~~l~rq~Lq~~~~-~~~l~~S~vns  294 (671)
T COG3292         225 ----QGVYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE-LWIG-TE-NGLWRTRLPRQGLQIPLS-KMHLGVSTVNS  294 (671)
T ss_pred             ----cceEEEchhhcccccc--CCCCcchheeeeecccCCC-EEEe-ec-ccceeEecCCCCcccccc-ccCCccccccc
Confidence                4788888876333222  2233332    33455676 8887 43 456777654321111100 01112  2356


Q ss_pred             eEeCCCCCEEEEEcCCC
Q 016318          285 VRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       285 i~~d~~G~lwva~~~~~  301 (391)
                      +..|.+|++|+++....
T Consensus       295 L~~D~dGsLWv~t~~gi  311 (671)
T COG3292         295 LWLDTDGSLWVGTYGGI  311 (671)
T ss_pred             eeeccCCCEeeeccCce
Confidence            88999999999987753

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.52  E-value=9.7e-06  Score=79.14  Aligned_cols=186  Identities=15%  Similarity=0.181  Sum_probs=109.2

Q ss_pred             cceeccccccCcceEEEccCCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceE
Q 016318           60 SEIKFLNQIQGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL  136 (391)
Q Consensus        60 ~~~~~~~~~~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi  136 (391)
                      ++.+.. .+..|.+|++.+||+ +|++.. .|+|++++..  ..+.+.....    .           ......+-++||
T Consensus        22 ~~~va~-GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~----v-----------~~~~ge~GLlgl   84 (454)
T TIGR03606        22 KKVLLS-GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPE----I-----------VNDAQHNGLLGL   84 (454)
T ss_pred             EEEEEC-CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCc----e-----------eccCCCCceeeE
Confidence            344434 488999999999998 777777 5999999765  2222211110    0           000013558999


Q ss_pred             EEecC------CCcEEEEEC----------CCCeEEEeCC--CCe---eEEceeccCCCcccCCcceeecCCCCEEEEeC
Q 016318          137 RFDKK------TGDLYIADA----------YFGLMKVGPE--GGL---ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS  195 (391)
Q Consensus       137 ~~d~~------~g~L~V~d~----------~~gl~~~d~~--~g~---~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~  195 (391)
                      +++++      ++.|||+-+          ...|.++..+  +..   .+.+..........+-..|++++||.|||+..
T Consensus        85 al~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~G  164 (454)
T TIGR03606        85 ALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIG  164 (454)
T ss_pred             EECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEEC
Confidence            99863      246899742          2237776543  211   12222222111123456789999999999863


Q ss_pred             CCcccc-hhh-eeee-------------cccCCCceEEEEeCCCC-----------eEEEeccCCCCcceEEEccCCCEE
Q 016318          196 STNYQR-RNF-MQLV-------------FSAEDTGRVLKYDPTTK-----------QTTVLLRNLQFPNGLSLSKDKSFF  249 (391)
Q Consensus       196 ~~~~~~-~~~-~~~~-------------~~~~~~g~l~~~d~~~~-----------~~~~~~~~~~~~ngia~~~d~~~l  249 (391)
                      ...... .+. ....             -.....|.|+|+|++..           ..+++.-+++.|.|++++|+++ |
T Consensus       165 D~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-L  243 (454)
T TIGR03606       165 EQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-L  243 (454)
T ss_pred             CCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-E
Confidence            321100 000 0000             00123578999998753           2356677888999999999887 9


Q ss_pred             EEEeCCC---CeEEEEE
Q 016318          250 VFCEGSV---GRLHKYW  263 (391)
Q Consensus       250 ~v~et~~---~~I~~~~  263 (391)
                      |++|-..   ..|.++.
T Consensus       244 w~~e~Gp~~~DEiN~I~  260 (454)
T TIGR03606       244 YASEQGPNSDDELNIIV  260 (454)
T ss_pred             EEEecCCCCCcEEEEec
Confidence            9998654   3455553

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=0.00012  Score=72.37  Aligned_cols=136  Identities=13%  Similarity=0.110  Sum_probs=82.5

Q ss_pred             eEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecc
Q 016318          135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~  210 (391)
                      ...+++++..|+++....   .|+.+|.++++.+.+....     ......++++||+ |+++...              
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~-----~~~~~~~~spDG~~l~f~sd~--------------  312 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF-----GIDTEPTWAPDGKSIYFTSDR--------------  312 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCC-----CCccceEECCCCCEEEEEECC--------------
Confidence            457888444565543332   3999999988877664321     1224567889986 5555421              


Q ss_pred             cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318          211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  288 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d  288 (391)
                       .+...++.+|.++++.+.+.........++++|||+.++++...+  .+|+.+++++.   +...+... +...+...+
T Consensus       313 -~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g---~~~~Lt~~-~~~~~p~~s  387 (433)
T PRK04922        313 -GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG---SVRTLTPG-SLDESPSFA  387 (433)
T ss_pred             -CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC---CeEECCCC-CCCCCceEC
Confidence             112368999988887766543333444689999999888874432  36888887552   23333221 123346778


Q ss_pred             CCCCEE
Q 016318          289 EKGEFW  294 (391)
Q Consensus       289 ~~G~lw  294 (391)
                      ++|+..
T Consensus       388 pdG~~i  393 (433)
T PRK04922        388 PNGSMV  393 (433)
T ss_pred             CCCCEE
Confidence            888843

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.45  E-value=0.00016  Score=71.77  Aligned_cols=134  Identities=11%  Similarity=0.124  Sum_probs=81.7

Q ss_pred             eEEEecCCCcEEEEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecc
Q 016318          135 GLRFDKKTGDLYIADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~  210 (391)
                      ...+++++..|+++....|   |+.+|.++++.+.+....     ......+.++||+ |+++...              
T Consensus       266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~-----~~~~~p~wSpDG~~I~f~s~~--------------  326 (448)
T PRK04792        266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHR-----AIDTEPSWHPDGKSLIFTSER--------------  326 (448)
T ss_pred             CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCC-----CCccceEECCCCCEEEEEECC--------------
Confidence            4578884445765433333   999999988877664321     1234567788885 6665421              


Q ss_pred             cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318          211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  288 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d  288 (391)
                       .+...++++|.++++.+.+........+.+++|||++++++...+  .+|+++++++.   +...+.. .........+
T Consensus       327 -~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g---~~~~lt~-~~~d~~ps~s  401 (448)
T PRK04792        327 -GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG---AMQVLTS-TRLDESPSVA  401 (448)
T ss_pred             -CCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC---CeEEccC-CCCCCCceEC
Confidence             123479999998888776643323334578999999998875433  36888887653   2232221 1112234677


Q ss_pred             CCCC
Q 016318          289 EKGE  292 (391)
Q Consensus       289 ~~G~  292 (391)
                      ++|+
T Consensus       402 pdG~  405 (448)
T PRK04792        402 PNGT  405 (448)
T ss_pred             CCCC
Confidence            7887

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.44  E-value=0.0002  Score=71.68  Aligned_cols=188  Identities=18%  Similarity=0.225  Sum_probs=126.7

Q ss_pred             ccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      +..-.+++..|||..+.+|..||+|-.|+.. .+-.+. +.                   ++ .....++.|.. .|+..
T Consensus       350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT-Ft-------------------eH-ts~Vt~v~f~~-~g~~l  407 (893)
T KOG0291|consen  350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT-FT-------------------EH-TSGVTAVQFTA-RGNVL  407 (893)
T ss_pred             ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE-ec-------------------cC-CCceEEEEEEe-cCCEE
Confidence            5556789999999999999999999999887 332222 11                   12 23356889998 78877


Q ss_pred             EEECCCC-eEEEeCCCC-eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          147 IADAYFG-LMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       147 V~d~~~g-l~~~d~~~g-~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      ++..-.| +-.+|.... ..+++..+.    ......+++|+.|.+.++.+-.                .=.|+.|+-+|
T Consensus       408 lssSLDGtVRAwDlkRYrNfRTft~P~----p~QfscvavD~sGelV~AG~~d----------------~F~IfvWS~qT  467 (893)
T KOG0291|consen  408 LSSSLDGTVRAWDLKRYRNFRTFTSPE----PIQFSCVAVDPSGELVCAGAQD----------------SFEIFVWSVQT  467 (893)
T ss_pred             EEeecCCeEEeeeecccceeeeecCCC----ceeeeEEEEcCCCCEEEeeccc----------------eEEEEEEEeec
Confidence            7766656 777776532 334443322    2356789999999988886432                22588999999


Q ss_pred             CeEEEeccCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEcCC
Q 016318          225 KQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCR  300 (391)
Q Consensus       225 ~~~~~~~~~~~~~-ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~  300 (391)
                      |+..-+..+-..| .+++++|+++ ++++.+....|.++++-+. .++.|.+.- +.-.-++++.|+|. +-|++-.+
T Consensus       468 GqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~i-~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  468 GQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLEI-RSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             CeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc-CceeeeEee-ccceeEEEEcCCCCeEEEEEecc
Confidence            9887776665555 5899999999 6666677777777766542 344554431 11234577788887 66776553

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.44  E-value=1.6e-06  Score=64.44  Aligned_cols=83  Identities=22%  Similarity=0.348  Sum_probs=60.6

Q ss_pred             cceeecCCCCEEEEeCCCcccch-hheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCe
Q 016318          180 NDLDIDDEGNVYFTDSSTNYQRR-NFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR  258 (391)
Q Consensus       180 ~~l~~d~~G~ly~td~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~  258 (391)
                      |+|+.-....+|+|... .++.. -.+.+.+-+-+-+.++.||+  ++.+++.+++.+||||+++||+++|||++..++.
T Consensus         1 NDIvavG~~sFy~TNDh-yf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~   77 (86)
T PF01731_consen    1 NDIVAVGPDSFYVTNDH-YFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAHS   77 (86)
T ss_pred             CCEEEECcCcEEEECch-hhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCe
Confidence            45655555588888642 12211 11223334456778999997  4688889999999999999999999999999999


Q ss_pred             EEEEEec
Q 016318          259 LHKYWLI  265 (391)
Q Consensus       259 I~~~~~~  265 (391)
                      |..|...
T Consensus        78 I~vy~~~   84 (86)
T PF01731_consen   78 IHVYKRH   84 (86)
T ss_pred             EEEEEec
Confidence            9999753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=98.44  E-value=0.00036  Score=66.81  Aligned_cols=190  Identities=14%  Similarity=0.080  Sum_probs=105.9

Q ss_pred             ccceeccccccCcceEEEccCCCeeEEEecC-CEEEEEeCCc-e----e--EEEeecCCCcccCCCCCCccccccccCcc
Q 016318           59 NSEIKFLNQIQGPESMAFDPLGRGPYTGVAD-GRILFWDGLK-W----T--DFAFTSNNRSELCNPKPIATSYLKNEHIC  130 (391)
Q Consensus        59 ~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~-g~I~~~~~~~-~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (391)
                      +++.+..+ +..|.+++.-++|. +.+.... |.+..+.... .    .  ...... ....    ..............
T Consensus        58 ~~~~~a~g-Le~p~~~~~lP~G~-~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~-~~~G----ll~~al~~~fa~~~  130 (399)
T COG2133          58 SVEVVAQG-LEHPWGLARLPDGV-LLVTERPTGRLRLISDGGSASPPVSTVPIVLLR-GQGG----LLDIALSPDFAQGR  130 (399)
T ss_pred             eccccccc-ccCchhheecCCce-EEEEccCCccEEEecCCCcccccccccceEEec-cCCC----ccceEecccccccc
Confidence            34444455 88999999999995 5554444 7776664331 0    0  000000 0000    00000011222234


Q ss_pred             CccceEEEecCCCcEEEEECCCCeEEEeCCCCee---EEceeccCCCcccCCcceeecCCCCEEEEeCCCcccch-hhe-
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLA---TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR-NFM-  205 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~---~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~-~~~-  205 (391)
                      ..|+++++.  .+.+|+++. ..+.+++....++   +.+.....+....+...|++++||+||++.-+...... +.. 
T Consensus       131 ~~~~~~a~~--~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~  207 (399)
T COG2133         131 LVYFGISEP--GGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNV  207 (399)
T ss_pred             eeeeEEEee--cCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCcc
Confidence            568888886  477888863 3577776221222   22223333323457788999999999999754311110 000 


Q ss_pred             --e-eecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeE
Q 016318          206 --Q-LVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRL  259 (391)
Q Consensus       206 --~-~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I  259 (391)
                        . .+++. ....++..|..+...+++..++..|.|++++|....||++|-....+
T Consensus       208 ~~~Gk~~r~-~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~  263 (399)
T COG2133         208 SLAGKVLRI-DRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL  263 (399)
T ss_pred             ccccceeee-ccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence              0 01111 12245566666666777788889999999999844499998776555

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.43  E-value=0.00035  Score=69.09  Aligned_cols=139  Identities=18%  Similarity=0.123  Sum_probs=86.4

Q ss_pred             cceEEEecCCCcEEEEECC---CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeee
Q 016318          133 PLGLRFDKKTGDLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~---~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~  208 (391)
                      ....++++++..|......   ..|+.+|..+++.+.+... .+    .....++.+||+ |+++.+.            
T Consensus       204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g----~~~~~~~SPDG~~la~~~~~------------  266 (435)
T PRK05137        204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-PG----MTFAPRFSPDGRKVVMSLSQ------------  266 (435)
T ss_pred             eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-CC----cccCcEECCCCCEEEEEEec------------
Confidence            3456788844445443322   2499999998877665422 22    234567889995 5555422            


Q ss_pred             cccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceE
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVR  286 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~  286 (391)
                         .++..|+.+|.++++.+.+..........+++|||+.++++...  ...|+++++++.   +.+.+....+......
T Consensus       267 ---~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~---~~~~lt~~~~~~~~~~  340 (435)
T PRK05137        267 ---GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS---NPRRISFGGGRYSTPV  340 (435)
T ss_pred             ---CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC---CeEEeecCCCcccCeE
Confidence               12356999999998887776544445568899999988776433  247999987663   2222222223334567


Q ss_pred             eCCCCCEE
Q 016318          287 TNEKGEFW  294 (391)
Q Consensus       287 ~d~~G~lw  294 (391)
                      .+++|+..
T Consensus       341 ~SpdG~~i  348 (435)
T PRK05137        341 WSPRGDLI  348 (435)
T ss_pred             ECCCCCEE
Confidence            78888743

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.38  E-value=1.2e-05  Score=75.22  Aligned_cols=215  Identities=20%  Similarity=0.258  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHhccCCCCCCccCCCCCceeeeecCCCCCCCCCCCccchhccccceeccccccCcceEEEccCCCeeEEE
Q 016318            7 LGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTG   86 (391)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gPe~i~~d~~G~~ly~~   86 (391)
                      +.+++++++++.-+.+..+...-....+.+.....+.        .+++.+..+|.+..+...+|+.+.+..+..++|++
T Consensus        11 i~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g   82 (376)
T KOG1520|consen   11 IFLFLAVIILLYLLSGSSIAGSPDDRLFSKLPLLGKL--------IPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTG   82 (376)
T ss_pred             HHHHHHHHHhhhccCcccccCCchhcccCCCCccccc--------ccccccCChhhheecccCCCceEEEECCceEEEec
Confidence            4445545555444445555555444456655443332        34454555555554444444444444233348999


Q ss_pred             ecCCEEEEEeCC---ceeEEEe-ecCCCcccCC---------------------------CCCCccccccccCccCcc--
Q 016318           87 VADGRILFWDGL---KWTDFAF-TSNNRSELCN---------------------------PKPIATSYLKNEHICGRP--  133 (391)
Q Consensus        87 ~~~g~I~~~~~~---~~~~~~~-~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~P--  133 (391)
                      ..+|.+-+.+..   ....... ........|.                           +.+..+..+ ..+..|+|  
T Consensus        83 ~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l-~~~~~G~~~k  161 (376)
T KOG1520|consen   83 NDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELL-ADEAEGKPFK  161 (376)
T ss_pred             cCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceec-cccccCeeee
Confidence            989988887662   0000000 0000111231                           111100000 11123444  


Q ss_pred             --ceEEEecCCCcEEEEECCC-----------------C-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEE
Q 016318          134 --LGLRFDKKTGDLYIADAYF-----------------G-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYF  192 (391)
Q Consensus       134 --~gi~~d~~~g~L~V~d~~~-----------------g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~  192 (391)
                        .++.+++ +|.+|..|+..                 | ++++|+.|...+.+..     .+.+||+++..+|+. +.+
T Consensus       162 f~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld-----~L~F~NGlaLS~d~sfvl~  235 (376)
T KOG1520|consen  162 FLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD-----GLYFPNGLALSPDGSFVLV  235 (376)
T ss_pred             ecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh-----cccccccccCCCCCCEEEE
Confidence              3777887 88999987532                 2 7777777766555543     367999999999986 555


Q ss_pred             EeCCCcccchhheeeecccCCCceEEEEeCCC---CeEEEeccCC-CCcceEEEccCCCEEEEEeC
Q 016318          193 TDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT---KQTTVLLRNL-QFPNGLSLSKDKSFFVFCEG  254 (391)
Q Consensus       193 td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~---~~~~~~~~~~-~~~ngia~~~d~~~l~v~et  254 (391)
                      +.++                 ..|+.+|=.+.   |+.+++.+++ .+|..|..+++|+ .||+-.
T Consensus       236 ~Et~-----------------~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~-fWVal~  283 (376)
T KOG1520|consen  236 AETT-----------------TARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGH-FWVALH  283 (376)
T ss_pred             Eeec-----------------cceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCC-EEEEEe
Confidence            5543                 45777776544   3447777755 5899999999999 777754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.38  E-value=0.0003  Score=69.41  Aligned_cols=137  Identities=9%  Similarity=0.076  Sum_probs=82.6

Q ss_pred             eEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecc
Q 016318          135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~  210 (391)
                      ...+++++..|++.....   .|+.+|.++++.+.+.... +    .......++||+ |+++...              
T Consensus       247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~----~~~~~~~spDg~~i~f~s~~--------------  307 (430)
T PRK00178        247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-A----IDTEPFWGKDGRTLYFTSDR--------------  307 (430)
T ss_pred             CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCC-C----CcCCeEECCCCCEEEEEECC--------------
Confidence            457888444565543332   3999999998877664321 1    123456788885 7666422              


Q ss_pred             cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318          211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  288 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d  288 (391)
                       .+...|+.++..+++.+.+..........+++|||+.++++....  ..|+++++++.   +.+.+.. .+......++
T Consensus       308 -~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg---~~~~lt~-~~~~~~p~~s  382 (430)
T PRK00178        308 -GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG---SVRILTD-TSLDESPSVA  382 (430)
T ss_pred             -CCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC---CEEEccC-CCCCCCceEC
Confidence             123479999988888766643333334568999999998876433  35888887652   2333322 1222345678


Q ss_pred             CCCCEEE
Q 016318          289 EKGEFWV  295 (391)
Q Consensus       289 ~~G~lwv  295 (391)
                      ++|+..+
T Consensus       383 pdg~~i~  389 (430)
T PRK00178        383 PNGTMLI  389 (430)
T ss_pred             CCCCEEE
Confidence            8887443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.38  E-value=0.00059  Score=67.37  Aligned_cols=140  Identities=11%  Similarity=0.073  Sum_probs=86.7

Q ss_pred             cceEEEecCCCcEEEEECC---CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeee
Q 016318          133 PLGLRFDKKTGDLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~---~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~  208 (391)
                      ....++++++..|......   ..|+.++.++|+.+.+... .+    ....+++++||+ |+++.+.            
T Consensus       201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~----~~~~~~~SPDG~~La~~~~~------------  263 (429)
T PRK03629        201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPDGSKLAFALSK------------  263 (429)
T ss_pred             eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC----CcCCeEECCCCCEEEEEEcC------------
Confidence            3467888844445333222   2388999988877665422 11    123578899995 7666432            


Q ss_pred             cccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceE
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVR  286 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~  286 (391)
                         .+...|+.+|.++++.+.+..........+++|||+.|+++...  ..+|+++++++.   +.+.+....+......
T Consensus       264 ---~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---~~~~lt~~~~~~~~~~  337 (429)
T PRK03629        264 ---TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG---APQRITWEGSQNQDAD  337 (429)
T ss_pred             ---CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC---CeEEeecCCCCccCEE
Confidence               11236999999999888776554455678999999977665432  247888887653   2222222222334577


Q ss_pred             eCCCCCEEE
Q 016318          287 TNEKGEFWV  295 (391)
Q Consensus       287 ~d~~G~lwv  295 (391)
                      ++++|+..+
T Consensus       338 ~SpDG~~Ia  346 (429)
T PRK03629        338 VSSDGKFMV  346 (429)
T ss_pred             ECCCCCEEE
Confidence            889998443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.38  E-value=5e-05  Score=66.53  Aligned_cols=188  Identities=17%  Similarity=0.174  Sum_probs=117.2

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .--++.|..+|+.+|+|+.||.+-.||....            .|..        ..+. ..-...+.+++..++|+++|
T Consensus        85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~------------~~qR--------~~~~-~spVn~vvlhpnQteLis~d  143 (311)
T KOG0315|consen   85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL------------SCQR--------NYQH-NSPVNTVVLHPNQTELISGD  143 (311)
T ss_pred             ceEEEEEeecCeEEEecCCCceEEEEeccCc------------ccch--------hccC-CCCcceEEecCCcceEEeec
Confidence            3467888899999999999998888876410            0110        1111 12234678888677899999


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                      ....|...|...........+.+   ..+...+.+++||.+.++..+                 .|+.++++.-+++...
T Consensus       144 qsg~irvWDl~~~~c~~~liPe~---~~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s  203 (311)
T KOG0315|consen  144 QSGNIRVWDLGENSCTHELIPED---DTSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTAS  203 (311)
T ss_pred             CCCcEEEEEccCCccccccCCCC---CcceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccc
Confidence            77779999988765443322222   246788999999988777643                 5888888876654433


Q ss_pred             ec---cCCC----CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcCCC
Q 016318          230 LL---RNLQ----FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       230 ~~---~~~~----~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~~~  301 (391)
                      ..   ..++    ..-...+|||+++|.-+ +....++.++.++-  -+.|...+ -.+.-.+-+++.||.+.|+..+..
T Consensus       204 ~l~P~~k~~ah~~~il~C~lSPd~k~lat~-ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  204 ELEPVHKFQAHNGHILRCLLSPDVKYLATC-SSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             cceEhhheecccceEEEEEECCCCcEEEee-cCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence            22   2222    22345689999955443 55556666665543  11122111 123455678889998777655543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.37  E-value=0.00037  Score=68.78  Aligned_cols=137  Identities=12%  Similarity=0.142  Sum_probs=80.4

Q ss_pred             ceEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeec
Q 016318          134 LGLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~  209 (391)
                      ...++++++..|+++....   .|+.+|.+++..+.+... .+    .......++||+ |+++...             
T Consensus       243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~wSpDG~~l~f~s~~-------------  304 (427)
T PRK02889        243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS-SG----IDTEPFFSPDGRSIYFTSDR-------------  304 (427)
T ss_pred             cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCC-CC----CCcCeEEcCCCCEEEEEecC-------------
Confidence            3567888444565543332   399999888776665332 11    223457888985 6665321             


Q ss_pred             ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEe
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  287 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~  287 (391)
                        .+.-.++.++..+++.+.+..........+++|||++|+++...+  ..|+.+++.+.   +...+.. .+.......
T Consensus       305 --~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g---~~~~lt~-~~~~~~p~~  378 (427)
T PRK02889        305 --GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG---QVTALTD-TTRDESPSF  378 (427)
T ss_pred             --CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC---CeEEccC-CCCccCceE
Confidence              112368888877776655542222334578999999887764433  36888887653   2222222 122345678


Q ss_pred             CCCCCEE
Q 016318          288 NEKGEFW  294 (391)
Q Consensus       288 d~~G~lw  294 (391)
                      +++|+..
T Consensus       379 spdg~~l  385 (427)
T PRK02889        379 APNGRYI  385 (427)
T ss_pred             CCCCCEE
Confidence            8888743

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.33  E-value=0.00019  Score=65.73  Aligned_cols=209  Identities=16%  Similarity=0.187  Sum_probs=121.9

Q ss_pred             cccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      .+..|=+++..+  +.+|.++.. +|+++... ..-.-.. ..+....|-   -|+.  ......-..+.|++ . ++++
T Consensus        47 ~F~r~MGl~~~~--~~l~~~t~~-qiw~f~~~~n~l~~~~-~~~~~D~~y---vPr~--~~~TGdidiHdia~-~-~~~l  115 (335)
T TIGR03032        47 TFPRPMGLAVSP--QSLTLGTRY-QLWRFANVDNLLPAGQ-THPGYDRLY---VPRA--SYVTGDIDAHDLAL-G-AGRL  115 (335)
T ss_pred             ccCccceeeeeC--CeEEEEEcc-eeEEcccccccccccc-cCCCCCeEE---eeee--eeeccCcchhheee-c-CCcE
Confidence            356788888864  348998876 48888211 1000000 000000010   0000  00001223577888 3 6788


Q ss_pred             EEEECC-CCeEEEeCCCCeeEEceec-----cCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          146 YIADAY-FGLMKVGPEGGLATSLATE-----AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       146 ~V~d~~-~gl~~~d~~~g~~~~~~~~-----~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      |+.+.. ..|..+++.-. ......+     .....--..|++|.....=-|+|.-++.-...-|.    +.+.+|+++ 
T Consensus       116 ~fVNT~fSCLatl~~~~S-F~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR----~~~~~gG~v-  189 (335)
T TIGR03032       116 LFVNTLFSCLATVSPDYS-FVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWR----EGRRDGGCV-  189 (335)
T ss_pred             EEEECcceeEEEECCCCc-cccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccc----ccccCCeEE-
Confidence            777665 56888887643 3333221     11112246789998754457877533211001111    223355655 


Q ss_pred             EeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEc
Q 016318          220 YDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIH  298 (391)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~  298 (391)
                      +|..++  +++.+++.+|.+-.+. ||+ ||+++...+.+.+++.+   .|+.+..+.+||+|.|+.+.  |. ++|++.
T Consensus       190 idv~s~--evl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~---~G~~e~Va~vpG~~rGL~f~--G~llvVgmS  260 (335)
T TIGR03032       190 IDIPSG--EVVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQ---AGKFQPVAFLPGFTRGLAFA--GDFAFVGLS  260 (335)
T ss_pred             EEeCCC--CEEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCC---CCcEEEEEECCCCCccccee--CCEEEEEec
Confidence            566655  4667899999988876 666 99999999999999854   36788888999999999998  66 556666


Q ss_pred             CCC
Q 016318          299 CRR  301 (391)
Q Consensus       299 ~~~  301 (391)
                      ..|
T Consensus       261 k~R  263 (335)
T TIGR03032       261 KLR  263 (335)
T ss_pred             ccc
Confidence            543

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.30  E-value=1.7e-05  Score=68.92  Aligned_cols=106  Identities=20%  Similarity=0.271  Sum_probs=68.7

Q ss_pred             cCccceEEEecCCCcEEEEECCC-Ce--EEEeCCCCeeEE---cee--ccCCCcccCCcceeecCCCCEEEEeCCCcccc
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYF-GL--MKVGPEGGLATS---LAT--EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQR  201 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~-gl--~~~d~~~g~~~~---~~~--~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~  201 (391)
                      .+-|.|+++|.+....|+.|+.+ .+  +.+|-.||.+..   +..  .........|.++++|.+|+||++..+     
T Consensus       157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----  231 (310)
T KOG4499|consen  157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----  231 (310)
T ss_pred             ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----
Confidence            46788999997667789998864 47  566677875432   111  111112358999999999999999966     


Q ss_pred             hhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEc-cCCCEEEEE
Q 016318          202 RNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLS-KDKSFFVFC  252 (391)
Q Consensus       202 ~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~-~d~~~l~v~  252 (391)
                                  .|+++++||.+|+.-.-. -.-......|+. ++-+.+|++
T Consensus       232 ------------g~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  232 ------------GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             ------------CcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence                        479999999999764321 112233445553 333445554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.29  E-value=0.00053  Score=67.86  Aligned_cols=176  Identities=9%  Similarity=0.024  Sum_probs=103.8

Q ss_pred             ceEEEccCCCeeEEEec---CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           72 ESMAFDPLGRGPYTGVA---DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~---~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      .+..+.+||+.++..+.   +..|+.++..  ....+...                       .+......+++++..|+
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-----------------------~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-----------------------PGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-----------------------CCcccCcEECCCCCEEE
Confidence            35678889985544332   3578888765  22222111                       11223457888444555


Q ss_pred             EEECC---CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          147 IADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       147 V~d~~---~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      ++...   ..|+.+|.+++..+.+.... +    .......++||+ |+++...               .+...|+.+|.
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~----~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~  321 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGTTTRLTDSP-A----IDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNA  321 (435)
T ss_pred             EEEecCCCceEEEEECCCCceEEccCCC-C----ccCceeEcCCCCEEEEEECC---------------CCCCeEEEEEC
Confidence            44332   23999999988877664321 1    234467788885 6665422               12347999998


Q ss_pred             CCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeCCCCCEE
Q 016318          223 TTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW  294 (391)
Q Consensus       223 ~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lw  294 (391)
                      ++++.+.+.......+..+++|||+.|+++....  .+|+.+++++.   ....+.. .....+...+++|+..
T Consensus       322 ~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~---~~~~lt~-~~~~~~p~~spDG~~i  391 (435)
T PRK05137        322 DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS---GERILTS-GFLVEGPTWAPNGRVI  391 (435)
T ss_pred             CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC---ceEeccC-CCCCCCCeECCCCCEE
Confidence            8887777654333334578999999888765432  47888887553   2222222 1234567888888843

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.29  E-value=0.00081  Score=66.39  Aligned_cols=138  Identities=11%  Similarity=0.077  Sum_probs=84.4

Q ss_pred             eEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecc
Q 016318          135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~  210 (391)
                      ...+++++..|+++....   .|+.+|.++++.+.+....     .........+||+ |+++...              
T Consensus       247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-----~~~~~~~wSPDG~~I~f~s~~--------------  307 (429)
T PRK03629        247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-----SNNTEPTWFPDSQNLAYTSDQ--------------  307 (429)
T ss_pred             CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-----CCcCceEECCCCCEEEEEeCC--------------
Confidence            457888444566553322   3999999988877664321     1235677889986 5555421              


Q ss_pred             cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318          211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  288 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d  288 (391)
                       .+.-.|+.+|.++++.+.+..........+++|||++++++...+  ..|+.+++++.   +.+.+.. ...-.+..++
T Consensus       308 -~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g---~~~~Lt~-~~~~~~p~~S  382 (429)
T PRK03629        308 -AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVLTD-TFLDETPSIA  382 (429)
T ss_pred             -CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC---CeEEeCC-CCCCCCceEC
Confidence             112378999998887776654333445688999999887764433  46888887653   2333322 1112345778


Q ss_pred             CCCCEEEE
Q 016318          289 EKGEFWVA  296 (391)
Q Consensus       289 ~~G~lwva  296 (391)
                      +||+..+.
T Consensus       383 pDG~~i~~  390 (429)
T PRK03629        383 PNGTMVIY  390 (429)
T ss_pred             CCCCEEEE
Confidence            88884443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=0.002  Score=58.41  Aligned_cols=186  Identities=13%  Similarity=0.110  Sum_probs=112.1

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      ..+++|.++.+|..+.+++.|..+..++..   ....+....                      -| +.-++|-....++
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk----------------------yG-~~~~~Fth~~~~~   71 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK----------------------YG-VDLACFTHHSNTV   71 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc----------------------cc-ccEEEEecCCceE
Confidence            467899999999988888888888888765   222221110                      01 2223443324444


Q ss_pred             EEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          146 YIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       146 ~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      .-+...  .-|.-++..+++.-++   +.|- -...+.|.+.|-+..+++.+-                 +..+.-||.+
T Consensus        72 i~sStk~d~tIryLsl~dNkylRY---F~GH-~~~V~sL~~sP~~d~FlS~S~-----------------D~tvrLWDlR  130 (311)
T KOG1446|consen   72 IHSSTKEDDTIRYLSLHDNKYLRY---FPGH-KKRVNSLSVSPKDDTFLSSSL-----------------DKTVRLWDLR  130 (311)
T ss_pred             EEccCCCCCceEEEEeecCceEEE---cCCC-CceEEEEEecCCCCeEEeccc-----------------CCeEEeeEec
Confidence            444332  2366666655543322   2221 246889999998899998754                 4577888877


Q ss_pred             CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCC--CCCceEeCCCCC-EEEEEcC
Q 016318          224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPG--YPDNVRTNEKGE-FWVAIHC  299 (391)
Q Consensus       224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g--~p~~i~~d~~G~-lwva~~~  299 (391)
                      ..+...+.. +..+.-+|++|+|- ++.+...+..|..|++.--.+|-+..|.- .+-  .-..|.++++|. +.+++..
T Consensus       131 ~~~cqg~l~-~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~  208 (311)
T KOG1446|consen  131 VKKCQGLLN-LSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA  208 (311)
T ss_pred             CCCCceEEe-cCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC
Confidence            665555443 23444578999996 44444555589999876433444555531 111  124689999998 5566555


Q ss_pred             C
Q 016318          300 R  300 (391)
Q Consensus       300 ~  300 (391)
                      +
T Consensus       209 s  209 (311)
T KOG1446|consen  209 S  209 (311)
T ss_pred             C
Confidence            4

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.28  E-value=0.001  Score=65.80  Aligned_cols=139  Identities=13%  Similarity=0.126  Sum_probs=85.7

Q ss_pred             ceEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeec
Q 016318          134 LGLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~  209 (391)
                      ...++++++..|+.+....   .|+.+|..+++.+.+... .+    .....++++||+ |+++.+.             
T Consensus       207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-~g----~~~~~~~SpDG~~l~~~~s~-------------  268 (433)
T PRK04922        207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-RG----INGAPSFSPDGRRLALTLSR-------------  268 (433)
T ss_pred             ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-CC----CccCceECCCCCEEEEEEeC-------------
Confidence            3557777444565554332   299999998876665322 22    123568889995 6665432             


Q ss_pred             ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEe
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  287 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~  287 (391)
                        .++..|+.+|.++++.+.+..........+++|||+.++++....  ..|+++++++.   +.+.+..........+.
T Consensus       269 --~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---~~~~lt~~g~~~~~~~~  343 (433)
T PRK04922        269 --DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---SAERLTFQGNYNARASV  343 (433)
T ss_pred             --CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CeEEeecCCCCccCEEE
Confidence              123479999999998877655433445678999999887764332  36888887653   22222211123445788


Q ss_pred             CCCCCEEE
Q 016318          288 NEKGEFWV  295 (391)
Q Consensus       288 d~~G~lwv  295 (391)
                      +++|+..+
T Consensus       344 SpDG~~Ia  351 (433)
T PRK04922        344 SPDGKKIA  351 (433)
T ss_pred             CCCCCEEE
Confidence            89998433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.27  E-value=0.00017  Score=68.46  Aligned_cols=115  Identities=16%  Similarity=0.157  Sum_probs=80.3

Q ss_pred             CCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeC---------CCCe
Q 016318          188 GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEG---------SVGR  258 (391)
Q Consensus       188 G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et---------~~~~  258 (391)
                      .++|++|.+.             -...+++..+|.+++++.-.......|+++ ++||++.+|++++         ....
T Consensus        13 ~~v~V~d~~~-------------~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~   78 (352)
T TIGR02658        13 RRVYVLDPGH-------------FAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDY   78 (352)
T ss_pred             CEEEEECCcc-------------cccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCE
Confidence            3688888541             011279999999998876666666799997 9999999999999         7788


Q ss_pred             EEEEEeccccCccceeecc--cCC--------CCCceEeCCCCC-EEEEEcC-CCchhhhhhhcCccceeeeeecCccc
Q 016318          259 LHKYWLIGEKAGNLEAFAI--LPG--------YPDNVRTNEKGE-FWVAIHC-RRSLYSHLMALYPKIRHFLLKLPISA  325 (391)
Q Consensus       259 I~~~~~~g~~~g~~~~~~~--~~g--------~p~~i~~d~~G~-lwva~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~  325 (391)
                      |..++.+..     +...+  +|.        .|..+.++++|+ +||+... ...+    .......++++..++.|.
T Consensus        79 V~v~D~~t~-----~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V----~VvD~~~~kvv~ei~vp~  148 (352)
T TIGR02658        79 VEVIDPQTH-----LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV----GVVDLEGKAFVRMMDVPD  148 (352)
T ss_pred             EEEEECccC-----cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE----EEEECCCCcEEEEEeCCC
Confidence            999986532     22222  222        344899999998 8887655 2222    112445778888888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.24  E-value=0.0017  Score=63.81  Aligned_cols=131  Identities=11%  Similarity=0.087  Sum_probs=80.1

Q ss_pred             EEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeeccc
Q 016318          136 LRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       136 i~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      ..+++++..|.+.....   .|+.++.++++.+.+... .+    .-......+|| .|+|+...               
T Consensus       238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~-~~----~d~~p~~SPDG~~I~F~Sdr---------------  297 (419)
T PRK04043        238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNY-PG----IDVNGNFVEDDKRIVFVSDR---------------  297 (419)
T ss_pred             eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccC-CC----ccCccEECCCCCEEEEEECC---------------
Confidence            45777444565543322   399999988887776432 11    11123578898 58887632               


Q ss_pred             CCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--------CeEEEEEeccccCccceeecccCCCCC
Q 016318          212 EDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--------GRLHKYWLIGEKAGNLEAFAILPGYPD  283 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--------~~I~~~~~~g~~~g~~~~~~~~~g~p~  283 (391)
                      .+...|+++|.++++.+.+...... + ..++|||+.+.++....        .+|+.+++++.   ..+.+... +.-.
T Consensus       298 ~g~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g---~~~~LT~~-~~~~  371 (419)
T PRK04043        298 LGYPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD---YIRRLTAN-GVNQ  371 (419)
T ss_pred             CCCceEEEEECCCCCeEeCccCCCc-C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC---CeEECCCC-CCcC
Confidence            1234799999999988666533222 2 48999999887765432        47888887653   23333221 2222


Q ss_pred             ceEeCCCCC
Q 016318          284 NVRTNEKGE  292 (391)
Q Consensus       284 ~i~~d~~G~  292 (391)
                      ....+++|+
T Consensus       372 ~p~~SPDG~  380 (419)
T PRK04043        372 FPRFSSDGG  380 (419)
T ss_pred             CeEECCCCC
Confidence            356788887

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=0.0016  Score=64.32  Aligned_cols=137  Identities=10%  Similarity=0.074  Sum_probs=82.4

Q ss_pred             eEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecc
Q 016318          135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~  210 (391)
                      ..++++++..|+++....   .|+.+|..+++.+.+... .+    .....+..+||+ |+++.+.              
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~g----~~~~~~~SPDG~~la~~~~~--------------  260 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-KG----SNSAPAWSPDGRTLAVALSR--------------  260 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-CC----CccceEECCCCCEEEEEEcc--------------
Confidence            557888444565554332   299999998876665322 22    223578889985 6665422              


Q ss_pred             cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318          211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  288 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d  288 (391)
                       .+.-.|+.+|.++++.+.+..........+++|||+.++++...  ...|+++++.+.   +.+......++..+..++
T Consensus       261 -~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g---~~~~lt~~g~~~~~~~~S  336 (427)
T PRK02889        261 -DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG---AAQRVTFTGSYNTSPRIS  336 (427)
T ss_pred             -CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC---ceEEEecCCCCcCceEEC
Confidence             12347999998888777665433334457899999987765332  346888876553   222221111223356788


Q ss_pred             CCCCEE
Q 016318          289 EKGEFW  294 (391)
Q Consensus       289 ~~G~lw  294 (391)
                      ++|+..
T Consensus       337 pDG~~I  342 (427)
T PRK02889        337 PDGKLL  342 (427)
T ss_pred             CCCCEE
Confidence            888843

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.22  E-value=0.0013  Score=64.46  Aligned_cols=173  Identities=16%  Similarity=0.136  Sum_probs=100.7

Q ss_pred             eEEEccCCCeeEEEecC---CEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           73 SMAFDPLGRGPYTGVAD---GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~---g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      +.++++||+.++.....   ..|+.++..  ....+...                       .+....+++++++..|++
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-----------------------~~~~~~~~~spDg~~l~~  250 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-----------------------PGMNGAPAFSPDGSKLAV  250 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-----------------------CCCccceEECCCCCEEEE
Confidence            34578889866555433   467777765  22222110                       122334678884445766


Q ss_pred             EECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          148 ADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       148 ~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      +....   .|+.++..++..+.+.... +    ........++|+ |+++...               .+...|+.+|..
T Consensus       251 ~~~~~~~~~i~~~d~~~~~~~~l~~~~-~----~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~  310 (417)
T TIGR02800       251 SLSKDGNPDIYVMDLDGKQLTRLTNGP-G----IDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDAD  310 (417)
T ss_pred             EECCCCCccEEEEECCCCCEEECCCCC-C----CCCCEEECCCCCEEEEEECC---------------CCCceEEEEECC
Confidence            54332   3999999888766654221 1    122446677885 5555421               123479999988


Q ss_pred             CCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeCCCCC
Q 016318          224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  292 (391)
Q Consensus       224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~  292 (391)
                      +++.+.+.........++++||++.++++....  .+|+.+++.+   +..+.+.. .+......++++|+
T Consensus       311 ~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~---~~~~~l~~-~~~~~~p~~spdg~  377 (417)
T TIGR02800       311 GGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG---GGERVLTD-TGLDESPSFAPNGR  377 (417)
T ss_pred             CCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC---CCeEEccC-CCCCCCceECCCCC
Confidence            887766654445556788999999888875533  3788888665   22233221 11223446777776

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.21  E-value=0.0023  Score=63.55  Aligned_cols=138  Identities=10%  Similarity=0.062  Sum_probs=84.2

Q ss_pred             ceEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeec
Q 016318          134 LGLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~  209 (391)
                      ....+++++..|+......   .|+.+|..+++.+.+... .+    .....+.++||+ |+++.+.             
T Consensus       221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g----~~~~~~wSPDG~~La~~~~~-------------  282 (448)
T PRK04792        221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG----INGAPRFSPDGKKLALVLSK-------------  282 (448)
T ss_pred             cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC----CcCCeeECCCCCEEEEEEeC-------------
Confidence            3467888444454433222   399999998876655322 21    123567889986 6665422             


Q ss_pred             ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceEe
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  287 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~  287 (391)
                        .+...|+.+|.++++.+.+..........+++||+++++++...  ...|+++++++.   +.+..........+.+.
T Consensus       283 --~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---~~~~Lt~~g~~~~~~~~  357 (448)
T PRK04792        283 --DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---KVSRLTFEGEQNLGGSI  357 (448)
T ss_pred             --CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEEecCCCCCcCeeE
Confidence              12346999999999887776544445567899999988776542  357888887653   22222111112234577


Q ss_pred             CCCCCEE
Q 016318          288 NEKGEFW  294 (391)
Q Consensus       288 d~~G~lw  294 (391)
                      +++|+..
T Consensus       358 SpDG~~l  364 (448)
T PRK04792        358 TPDGRSM  364 (448)
T ss_pred             CCCCCEE
Confidence            8888743

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.21  E-value=0.00025  Score=63.92  Aligned_cols=154  Identities=18%  Similarity=0.207  Sum_probs=97.7

Q ss_pred             cCcceEEEccCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ...|+|++- +++ +|.=++ .+..+.+|.+.++......                  .   .+.-.||+.|  +..||+
T Consensus        90 ~FgEGit~~-~d~-l~qLTWk~~~~f~yd~~tl~~~~~~~------------------y---~~EGWGLt~d--g~~Li~  144 (264)
T PF05096_consen   90 YFGEGITIL-GDK-LYQLTWKEGTGFVYDPNTLKKIGTFP------------------Y---PGEGWGLTSD--GKRLIM  144 (264)
T ss_dssp             --EEEEEEE-TTE-EEEEESSSSEEEEEETTTTEEEEEEE----------------------SSS--EEEEC--SSCEEE
T ss_pred             ccceeEEEE-CCE-EEEEEecCCeEEEEccccceEEEEEe------------------c---CCcceEEEcC--CCEEEE
Confidence            467888886 344 666554 5888888887444443221                  1   1345788865  578999


Q ss_pred             EECCCCeEEEeCCCCeeE-EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          148 ADAYFGLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      +|....|+.+||++=+.. .+.-..++.+....|.+..- +|.||.--..                 +..|+++||++|+
T Consensus       145 SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~  206 (264)
T PF05096_consen  145 SDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGK  206 (264)
T ss_dssp             E-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-B
T ss_pred             ECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCe
Confidence            998888999999874333 33323456677788888765 7899987754                 4689999999999


Q ss_pred             EEEecc-----------C-----CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          227 TTVLLR-----------N-----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       227 ~~~~~~-----------~-----~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      +.-..+           .     ..--||||.+|+.+.+||+--.=.+++.+.+.
T Consensus       207 V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~  261 (264)
T PF05096_consen  207 VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV  261 (264)
T ss_dssp             EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred             EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence            876531           0     12469999999999999985433566666543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.20  E-value=0.00045  Score=64.16  Aligned_cols=193  Identities=17%  Similarity=0.238  Sum_probs=110.6

Q ss_pred             ceEEEccCCCeeEEEecC------------CEEEEEeCC--c-eeEEEeecCCCcccCCCCCCccccccccCccCccceE
Q 016318           72 ESMAFDPLGRGPYTGVAD------------GRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL  136 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~------------g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi  136 (391)
                      -++.+|+.|++|..++..            -+|+.+|..  + .+.+.. +..                .....+....+
T Consensus         4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~-p~~----------------~~~~~s~lndl   66 (287)
T PF03022_consen    4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPF-PPD----------------IAPPDSFLNDL   66 (287)
T ss_dssp             EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE---CC----------------CS-TCGGEEEE
T ss_pred             cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEEC-ChH----------------HcccccccceE
Confidence            367899999854445432            388999877  2 222221 111                11123456678


Q ss_pred             EEecCC-----CcEEEEECC-CCeEEEeCCCCeeEEceecc------------CCCccc---CCcceeecC---CC-CEE
Q 016318          137 RFDKKT-----GDLYIADAY-FGLMKVGPEGGLATSLATEA------------EGVPLR---FTNDLDIDD---EG-NVY  191 (391)
Q Consensus       137 ~~d~~~-----g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~------------~~~~~~---~~~~l~~d~---~G-~ly  191 (391)
                      ++|..+     +..||+|.. .||.++|..+++..++....            .|..+.   ...+++..+   +| .+|
T Consensus        67 ~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LY  146 (287)
T PF03022_consen   67 VVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLY  146 (287)
T ss_dssp             EEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEE
T ss_pred             EEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEE
Confidence            888632     468999998 57999999998876654211            111111   133455543   33 477


Q ss_pred             EEeCCCcccchhheeeecccCCCceEEEEeCC---C----------CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCe
Q 016318          192 FTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT---T----------KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR  258 (391)
Q Consensus       192 ~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~---~----------~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~  258 (391)
                      +..-++                 ..+++...+   +          .+++.+.+......|++++++|. ||+++...+.
T Consensus       147 f~~lss-----------------~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~a  208 (287)
T PF03022_consen  147 FHPLSS-----------------RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNA  208 (287)
T ss_dssp             EEETT------------------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTE
T ss_pred             EEeCCC-----------------CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCe
Confidence            765331                 234444321   0          01222222223567899999887 9999999999


Q ss_pred             EEEEEecccc-CccceeecccC---CCCCceEeCC--CCCEEEEEcC
Q 016318          259 LHKYWLIGEK-AGNLEAFAILP---GYPDNVRTNE--KGEFWVAIHC  299 (391)
Q Consensus       259 I~~~~~~g~~-~g~~~~~~~~~---g~p~~i~~d~--~G~lwva~~~  299 (391)
                      |.+++..++- ..+.++++.-+   -+|+++.++.  +|.+|+....
T Consensus       209 I~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  209 IGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             EEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             EEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence            9999977642 23445555322   4799999999  9999998755

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.20  E-value=0.00088  Score=67.28  Aligned_cols=234  Identities=16%  Similarity=0.135  Sum_probs=128.6

Q ss_pred             eccccccCcceEEEcc--CCCeeEEEe-cCCEEEEEeCC--ceeEEEeecCCCc--ccCCCCCCccccccccCccCccce
Q 016318           63 KFLNQIQGPESMAFDP--LGRGPYTGV-ADGRILFWDGL--KWTDFAFTSNNRS--ELCNPKPIATSYLKNEHICGRPLG  135 (391)
Q Consensus        63 ~~~~~~~gPe~i~~d~--~G~~ly~~~-~~g~I~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~P~g  135 (391)
                      +.-|+.+.|+--..|.  ||+.+|+.. .+.||-|++.+  +...+...++...  ..|-...+-..|+.    |+.=..
T Consensus       122 ~~~gD~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~----~~~e~~  197 (635)
T PRK02888        122 YLNGDTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVF----CNGEFR  197 (635)
T ss_pred             ccCCCcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEE----eCcccc
Confidence            4457788887655553  688777765 47899999887  3333332221110  00100000011110    111112


Q ss_pred             EEEecCCCcEEEEECCCC-eEEEeCCCCeeEEcee-ccCCCcccCCcceeecCCCC-EEEEeCCCccc---------chh
Q 016318          136 LRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQ---------RRN  203 (391)
Q Consensus       136 i~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~-~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~---------~~~  203 (391)
                      +=+++++..++..+.+.+ +..+|.++-++  ... ..++    .|..++++++|. +|++...+.-.         -++
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV--~~qV~Vdg----npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d  271 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEV--AWQVMVDG----NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD  271 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceE--EEEEEeCC----CcccceECCCCCEEEEeccCcccCcceeeeccccCc
Confidence            223342224555544545 67788776432  221 1222    578899999885 55653211100         001


Q ss_pred             heee--e---cccC--------CCceEEEEeCCC-----CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          204 FMQL--V---FSAE--------DTGRVLKYDPTT-----KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       204 ~~~~--~---~~~~--------~~g~l~~~d~~~-----~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      +...  +   .+..        ..++|-.+|..+     .+..........|.|++++|||+++|++...++.+..++++
T Consensus       272 ~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~  351 (635)
T PRK02888        272 WVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR  351 (635)
T ss_pred             eEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence            1000  0   0111        234688888876     34555556667999999999999999999888999999876


Q ss_pred             cccC---cc----ceeecc--cCCCCCceEeCCCCCEEEEEcCCCchhhh
Q 016318          266 GEKA---GN----LEAFAI--LPGYPDNVRTNEKGEFWVAIHCRRSLYSH  306 (391)
Q Consensus       266 g~~~---g~----~~~~~~--~~g~p~~i~~d~~G~lwva~~~~~~~~~~  306 (391)
                      .-+.   ++    ..+..+  +--.|-..++|.+|+.|+++.-...+..|
T Consensus       352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kw  401 (635)
T PRK02888        352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKW  401 (635)
T ss_pred             hhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEE
Confidence            4211   01    112222  21258889999999999998876665444

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.16  E-value=0.0026  Score=57.65  Aligned_cols=193  Identities=11%  Similarity=0.138  Sum_probs=114.7

Q ss_pred             ccCcceEEEccCCCeeEEEecC-CEEEEEeCC-c-eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           68 IQGPESMAFDPLGRGPYTGVAD-GRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~~-g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      -..-.+++++++.+.+|+.+.. -.|+.++.. + ..++.-                      .....|-+|.+-. +|.
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL----------------------~g~~DpE~Ieyig-~n~  141 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL----------------------TGFSDPETIEYIG-GNQ  141 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc----------------------cccCChhHeEEec-CCE
Confidence            3457789999999988876654 577777665 2 222211                      1145677888875 555


Q ss_pred             EEEEECCCC---eEEEeCCCCeeEEcee--c--cCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeeecccCCCce
Q 016318          145 LYIADAYFG---LMKVGPEGGLATSLAT--E--AEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       145 L~V~d~~~g---l~~~d~~~g~~~~~~~--~--~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      .-++|....   ++.+|+++..+..-..  +  ....+.....++|-|+. +++|++-..               +| -+
T Consensus       142 fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr---------------~P-~~  205 (316)
T COG3204         142 FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER---------------NP-IG  205 (316)
T ss_pred             EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc---------------CC-cE
Confidence            566665533   4556666543322110  1  11122456789999985 578888632               22 25


Q ss_pred             EEEEeCCCCeEEEecc-------C--CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-------ccCC
Q 016318          217 VLKYDPTTKQTTVLLR-------N--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-------ILPG  280 (391)
Q Consensus       217 l~~~d~~~~~~~~~~~-------~--~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-------~~~g  280 (391)
                      |+.++...........       +  +..-.|+.+++..+.++|-...++.+..++.+|...+....-.       +.| 
T Consensus       206 I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dip-  284 (316)
T COG3204         206 IFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIP-  284 (316)
T ss_pred             EEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCC-
Confidence            6666633222211110       0  1234578888877778888788889999998885322111111       122 


Q ss_pred             CCCceEeCCCCCEEEEEcCC
Q 016318          281 YPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       281 ~p~~i~~d~~G~lwva~~~~  300 (391)
                      .+.||+.|.+|++|+..-.+
T Consensus       285 qaEGiamDd~g~lYIvSEPn  304 (316)
T COG3204         285 QAEGIAMDDDGNLYIVSEPN  304 (316)
T ss_pred             CcceeEECCCCCEEEEecCC
Confidence            37899999999999986543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.15  E-value=0.0012  Score=65.21  Aligned_cols=175  Identities=16%  Similarity=0.177  Sum_probs=100.0

Q ss_pred             ceEEEccCCCeeEEEecC---CEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           72 ESMAFDPLGRGPYTGVAD---GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~---g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      .+..++|||+.+.+.+.+   ..|+.++..  ..+.+...                       .+.-...++++++..|+
T Consensus       207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-----------------------~g~~~~~~wSPDG~~La  263 (429)
T PRK01742        207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-----------------------RGHNGAPAFSPDGSRLA  263 (429)
T ss_pred             ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-----------------------CCccCceeECCCCCEEE
Confidence            456788999866554432   357777754  11222111                       01112457888433465


Q ss_pred             EEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          147 IADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       147 V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      ++....|   |+.+|.+++..+.+... .    ......+..+||. |+++...               .+.-.|+.++.
T Consensus       264 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~----~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~  323 (429)
T PRK01742        264 FASSKDGVLNIYVMGANGGTPSQLTSG-A----GNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSA  323 (429)
T ss_pred             EEEecCCcEEEEEEECCCCCeEeeccC-C----CCcCCEEECCCCCEEEEEECC---------------CCCceEEEEEC
Confidence            5533333   88899988877665432 1    1245678899996 6666422               12346888887


Q ss_pred             CCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEc
Q 016318          223 TTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       223 ~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~  298 (391)
                      .++..+.+. ...  ...+++|||+.++++..  ..++++++.+   ++.+.... ........++++|+..+...
T Consensus       324 ~~~~~~~l~-~~~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~---g~~~~lt~-~~~~~~~~~sPdG~~i~~~s  390 (429)
T PRK01742        324 SGGGASLVG-GRG--YSAQISADGKTLVMING--DNVVKQDLTS---GSTEVLSS-TFLDESPSISPNGIMIIYSS  390 (429)
T ss_pred             CCCCeEEec-CCC--CCccCCCCCCEEEEEcC--CCEEEEECCC---CCeEEecC-CCCCCCceECCCCCEEEEEE
Confidence            776665542 211  34679999998877643  5788888654   22222221 11123467889998555543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.14  E-value=0.00033  Score=70.20  Aligned_cols=194  Identities=15%  Similarity=0.159  Sum_probs=124.5

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      .+-.++.+..+|+.+++.+-||++..||..+.+-|....      |.           +  --.-..+++|+ .|.|.++
T Consensus       393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft------~P-----------~--p~QfscvavD~-sGelV~A  452 (893)
T KOG0291|consen  393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT------SP-----------E--PIQFSCVAVDP-SGELVCA  452 (893)
T ss_pred             CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec------CC-----------C--ceeeeEEEEcC-CCCEEEe
Confidence            355667788899999999999999999988544444321      00           0  01123678898 7888777


Q ss_pred             ECCC--CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          149 DAYF--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       149 d~~~--gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      .+..  .|+.++.+||+...+....+|.    ..++.++++|++.++.+-               ..+-|++-.-...++
T Consensus       453 G~~d~F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~SW---------------DkTVRiW~if~s~~~  513 (893)
T KOG0291|consen  453 GAQDSFEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGSW---------------DKTVRIWDIFSSSGT  513 (893)
T ss_pred             eccceEEEEEEEeecCeeeehhcCCCCc----ceeeEEccccCeEEeccc---------------cceEEEEEeeccCce
Confidence            6553  4999999999877665555553    677899999987777532               112244433334455


Q ss_pred             EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc-cCcc-------------ceeecc----cCCCCCceEeC
Q 016318          227 TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE-KAGN-------------LEAFAI----LPGYPDNVRTN  288 (391)
Q Consensus       227 ~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~-~~g~-------------~~~~~~----~~g~p~~i~~d  288 (391)
                      .+++. --....++++.|||+-|.|+ |.++.|..++.+.. ..+.             .+.+..    ....-..|+.+
T Consensus       514 vEtl~-i~sdvl~vsfrPdG~elaVa-TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~yS  591 (893)
T KOG0291|consen  514 VETLE-IRSDVLAVSFRPDGKELAVA-TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYS  591 (893)
T ss_pred             eeeEe-eccceeEEEEcCCCCeEEEE-EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEc
Confidence            55542 23456789999999999998 66778888876521 1111             111210    00123458889


Q ss_pred             CCCCEEEEEcCCCch
Q 016318          289 EKGEFWVAIHCRRSL  303 (391)
Q Consensus       289 ~~G~lwva~~~~~~~  303 (391)
                      .||.+.+|....+.+
T Consensus       592 aDG~~IlAgG~sn~i  606 (893)
T KOG0291|consen  592 ADGKCILAGGESNSI  606 (893)
T ss_pred             CCCCEEEecCCcccE
Confidence            999988876655444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.13  E-value=0.0004  Score=65.85  Aligned_cols=184  Identities=17%  Similarity=0.204  Sum_probs=113.0

Q ss_pred             CcceEEEccCCCeeEEEecCCEEE--EEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccc-eEEEecCCC
Q 016318           70 GPESMAFDPLGRGPYTGVADGRIL--FWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL-GLRFDKKTG  143 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~-gi~~d~~~g  143 (391)
                      +-.+|-|.|.-.++.++..|+.+.  .+|++   .+..+..                        ...|. ..+|.+ +|
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l------------------------~~fPi~~a~f~p-~G  269 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL------------------------EKFPIQKAEFAP-NG  269 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee------------------------ccCccceeeecC-CC
Confidence            567888998888888888887544  44444   1111110                        12232 345666 45


Q ss_pred             c--EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          144 D--LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       144 ~--L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      .  ++++....=++.+|..+.++..+... .|.+-.+...+.+.+++++.....                 .+|.|....
T Consensus       270 ~~~i~~s~rrky~ysyDle~ak~~k~~~~-~g~e~~~~e~FeVShd~~fia~~G-----------------~~G~I~lLh  331 (514)
T KOG2055|consen  270 HSVIFTSGRRKYLYSYDLETAKVTKLKPP-YGVEEKSMERFEVSHDSNFIAIAG-----------------NNGHIHLLH  331 (514)
T ss_pred             ceEEEecccceEEEEeeccccccccccCC-CCcccchhheeEecCCCCeEEEcc-----------------cCceEEeeh
Confidence            4  34433233489999999888776433 333334667788888888544442                 257788887


Q ss_pred             CCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC-CCCceEeCCCCCEEEEEcCC
Q 016318          222 PTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-YPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       222 ~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g-~p~~i~~d~~G~lwva~~~~  300 (391)
                      ..|++...-..--....+++++.|++.||++ ...+.||.+++...  .....|.+-.+ .-..++.+.+|. |+|+.+.
T Consensus       332 akT~eli~s~KieG~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~  407 (514)
T KOG2055|consen  332 AKTKELITSFKIEGVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATGSD  407 (514)
T ss_pred             hhhhhhhheeeeccEEeeEEEecCCcEEEEE-cCCceEEEEecCCc--ceEEEEeecCccceeeeeecCCCc-eEEeccC
Confidence            7777654333222345678899999988877 44569999998654  33444544222 234578888887 6666554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.13  E-value=0.0013  Score=59.73  Aligned_cols=190  Identities=18%  Similarity=0.246  Sum_probs=113.6

Q ss_pred             cccCcceEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      ...--.+++.+++|+.+.+++.|..|.-||--   -...+...                        .-.++..+++.+.
T Consensus        64 H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~------------------------spv~~~q~hp~k~  119 (405)
T KOG1273|consen   64 HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD------------------------SPVWGAQWHPRKR  119 (405)
T ss_pred             cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc------------------------CccceeeeccccC
Confidence            34455789999999999999999988888754   12222211                        1124666777667


Q ss_pred             cEEEEECCC-CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          144 DLYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       144 ~L~V~d~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      +..|+.--. .-+.++...++.+.+....++.....+....+|+.|+..++..+                 .|.+..||.
T Consensus       120 n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts-----------------KGkllv~~a  182 (405)
T KOG1273|consen  120 NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS-----------------KGKLLVYDA  182 (405)
T ss_pred             CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC-----------------cceEEEEec
Confidence            777765432 33333333344455544444433334555678999976666544                 489999998


Q ss_pred             CCCeEEEeccC--CCCcceEEEccCCCEEEEEeCCCCeEEEEEecc----ccCcccee---eccc-CCCC-CceEeCCCC
Q 016318          223 TTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG----EKAGNLEA---FAIL-PGYP-DNVRTNEKG  291 (391)
Q Consensus       223 ~~~~~~~~~~~--~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g----~~~g~~~~---~~~~-~g~p-~~i~~d~~G  291 (391)
                      .|-+...-...  .+....|-++..|+++.+ ++...-|..|.+..    .+.+..+.   +.++ ...+ .+++++.+|
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~~lii-NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg  261 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGRFLII-NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG  261 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCcEEEE-ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence            87654332211  233446778889996655 47677778887652    12333332   1221 1122 468899999


Q ss_pred             CEEEEEc
Q 016318          292 EFWVAIH  298 (391)
Q Consensus       292 ~lwva~~  298 (391)
                      .+.+|..
T Consensus       262 eYv~a~s  268 (405)
T KOG1273|consen  262 EYVCAGS  268 (405)
T ss_pred             cEEEecc
Confidence            8777654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.12  E-value=0.0012  Score=59.61  Aligned_cols=197  Identities=13%  Similarity=0.195  Sum_probs=100.1

Q ss_pred             CccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~  209 (391)
                      ..+.||+++++.+.||+..-..+ |+.++.++..++.+.  ..+  +.-+.+|+...+|.+.+++..             
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~--l~g--~~D~EgI~y~g~~~~vl~~Er-------------   84 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP--LDG--FGDYEGITYLGNGRYVLSEER-------------   84 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEETT-------------
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe--CCC--CCCceeEEEECCCEEEEEEcC-------------
Confidence            44789999996788988766544 999998865555432  222  345788998888888887743             


Q ss_pred             ccCCCceEEEEeC--CCCeE-----EEeccCC-----CCcceEEEccCCCEEEEEeCCC-CeEEEEEeccccCccceeec
Q 016318          210 SAEDTGRVLKYDP--TTKQT-----TVLLRNL-----QFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFA  276 (391)
Q Consensus       210 ~~~~~g~l~~~d~--~~~~~-----~~~~~~~-----~~~ngia~~~d~~~l~v~et~~-~~I~~~~~~g~~~g~~~~~~  276 (391)
                          .++++.++.  .++..     ..+.-++     ..--|+|+++.++.++++.-.. .+|+.+...-. .....+..
T Consensus        85 ----~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~-~~~~~~~~  159 (248)
T PF06977_consen   85 ----DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG-GFDLFVSD  159 (248)
T ss_dssp             ----TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS--EEEE
T ss_pred             ----CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC-ccceeecc
Confidence                355655443  33222     1121111     1235999999877787774322 34555543101 00111100


Q ss_pred             --ccC------CCCCceEeCCC-CCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCC
Q 016318          277 --ILP------GYPDNVRTNEK-GEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPE  347 (391)
Q Consensus       277 --~~~------g~p~~i~~d~~-G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~  347 (391)
                        .++      .-|.++++++. |++|+-....                                      .+++++|.+
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es--------------------------------------~~l~~~d~~  201 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES--------------------------------------RLLLELDRQ  201 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTT--------------------------------------TEEEEE-TT
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCC--------------------------------------CeEEEECCC
Confidence              011      12566777764 4577654433                                      458889999


Q ss_pred             CCEEEEEeCCCC-----CeeeceeEEEEE-CCEEEEecCCCCeEEEE
Q 016318          348 GKILQVLEDSKG-----KVVKAISEVEEK-DGKLWMGSVLMPFVAVY  388 (391)
Q Consensus       348 g~~~~~~~~~~g-----~~~~~is~~~~~-~g~Lylgs~~~~~i~~~  388 (391)
                      |+++..+.=..|     +.+.....++.+ +|+||+.|=. +..-|+
T Consensus       202 G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~f  247 (248)
T PF06977_consen  202 GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYRF  247 (248)
T ss_dssp             --EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT-TEEEEE
T ss_pred             CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC-ceEEEe
Confidence            998776644443     234445566654 4999999853 344443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=98.09  E-value=0.0042  Score=55.98  Aligned_cols=216  Identities=13%  Similarity=0.133  Sum_probs=127.7

Q ss_pred             cceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCC---ceeEE----------EeecCCCcccCCCCCCccccc--
Q 016318           60 SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDF----------AFTSNNRSELCNPKPIATSYL--  124 (391)
Q Consensus        60 ~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~----------~~~~~~~~~~~~~~~~~~~~~--  124 (391)
                      .++.+.|.+.---++-..+|.+.+..++.||++..||.-   +...+          +..+....-.|.+-...|.-.  
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            345566766667788888999989999999999999864   11111          111111111222211111000  


Q ss_pred             -------------cccCccCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCE
Q 016318          125 -------------KNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNV  190 (391)
Q Consensus       125 -------------~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~l  190 (391)
                                   .....-+......|-. ++.|..+....-....|.++|+.........|    -...+++.| +++.
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~g----DV~slsl~p~~~nt  201 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTG----DVMSLSLSPSDGNT  201 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcc----cEEEEecCCCCCCe
Confidence                         0111123333445543 55666554444567778887765443222222    345677777 8899


Q ss_pred             EEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC
Q 016318          191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA  269 (391)
Q Consensus       191 y~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~  269 (391)
                      |++.+-                 +.....+|...+...+-.. .-...|.|.+.|+|. -+++-+.......|++..+  
T Consensus       202 FvSg~c-----------------D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD--  261 (343)
T KOG0286|consen  202 FVSGGC-----------------DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRAD--  261 (343)
T ss_pred             EEeccc-----------------ccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCC--
Confidence            998743                 3556778877776555443 345688999999998 5566677777888887643  


Q ss_pred             ccceeecc--cCCCCCceEeCCCCCEEEEEcCC
Q 016318          270 GNLEAFAI--LPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       270 g~~~~~~~--~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      .+..+|..  ......+++++..|++..+....
T Consensus       262 ~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d  294 (343)
T KOG0286|consen  262 QELAVYSHDSIICGITSVAFSKSGRLLFAGYDD  294 (343)
T ss_pred             cEEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence            34455542  11235678999999977775544

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.07  E-value=0.0024  Score=57.06  Aligned_cols=199  Identities=12%  Similarity=0.090  Sum_probs=123.7

Q ss_pred             ccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318           59 NSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (391)
Q Consensus        59 ~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~  138 (391)
                      .+.+.+.|-=+.-++++..+||+..+++++|+.+..||...-+....+                    +......++++|
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f--------------------~GH~~dVlsva~  113 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF--------------------VGHTKDVLSVAF  113 (315)
T ss_pred             ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE--------------------EecCCceEEEEe
Confidence            344455554456678899999998899999998888887621222111                    111344788999


Q ss_pred             ecCCCcEEEEEC-CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCce
Q 016318          139 DKKTGDLYIADA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       139 d~~~g~L~V~d~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      ++ +++-+|..+ .+-|..+|..++..-.+...   ..-...+.+.+.|+. +.++...+                .++.
T Consensus       114 s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~---~~~~WVscvrfsP~~~~p~Ivs~s----------------~Dkt  173 (315)
T KOG0279|consen  114 ST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHED---SHREWVSCVRFSPNESNPIIVSAS----------------WDKT  173 (315)
T ss_pred             cC-CCceeecCCCcceeeeeeecccEEEEEecC---CCcCcEEEEEEcCCCCCcEEEEcc----------------CCce
Confidence            98 555555433 35588888776543333221   113578888888874 66666544                2466


Q ss_pred             EEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEE
Q 016318          217 VLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWV  295 (391)
Q Consensus       217 l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwv  295 (391)
                      |-.+|.++-+.+.-. ..-.+.|-++++|||. ++.+....+.++..++...+.  ...+.. .-....+++.|+ ++|+
T Consensus       174 vKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~--lysl~a-~~~v~sl~fspn-rywL  248 (315)
T KOG0279|consen  174 VKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN--LYSLEA-FDIVNSLCFSPN-RYWL  248 (315)
T ss_pred             EEEEccCCcchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce--eEeccC-CCeEeeEEecCC-ceeE
Confidence            777888776665433 3345778999999998 777655566777777764221  111111 012456888875 5787


Q ss_pred             EEcCCCc
Q 016318          296 AIHCRRS  302 (391)
Q Consensus       296 a~~~~~~  302 (391)
                      +.....+
T Consensus       249 ~~at~~s  255 (315)
T KOG0279|consen  249 CAATATS  255 (315)
T ss_pred             eeccCCc
Confidence            7554433

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.07  E-value=0.0056  Score=59.22  Aligned_cols=192  Identities=15%  Similarity=0.152  Sum_probs=113.2

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      -.++.+.|||..+.+...||+|+.+|+..-+.+....                 ..+...|...++.++|+..++.-+.+
T Consensus       193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~-----------------~~~aHkGsIfalsWsPDs~~~~T~Sa  255 (603)
T KOG0318|consen  193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELE-----------------DSDAHKGSIFALSWSPDSTQFLTVSA  255 (603)
T ss_pred             eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEec-----------------CCCCccccEEEEEECCCCceEEEecC
Confidence            4588899999977788899999999987222221111                 01122466778888885556666666


Q ss_pred             CCCeEEEeCCCCeeEE-ce--eccCCCc------------------------------------ccCCcceeecCCCCEE
Q 016318          151 YFGLMKVGPEGGLATS-LA--TEAEGVP------------------------------------LRFTNDLDIDDEGNVY  191 (391)
Q Consensus       151 ~~gl~~~d~~~g~~~~-~~--~~~~~~~------------------------------------~~~~~~l~~d~~G~ly  191 (391)
                      .+-+-..|..++++.. +.  ...+.++                                    .+....+.+.++|...
T Consensus       256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i  335 (603)
T KOG0318|consen  256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI  335 (603)
T ss_pred             CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence            5655555554443221 11  1111110                                    1122334444444333


Q ss_pred             EEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCC--CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC
Q 016318          192 FTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA  269 (391)
Q Consensus       192 ~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~  269 (391)
                      ++                 +.-+|.+..|+..++....+....  ....+++.+..+. ++.. ...+.++++.+++...
T Consensus       336 ~S-----------------gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~-g~Dd~l~~~~~~~~~~  396 (603)
T KOG0318|consen  336 YS-----------------GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTI-GWDDTLRVISLKDNGY  396 (603)
T ss_pred             Ee-----------------eccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEE-ecCCeEEEEecccCcc
Confidence            33                 334788999998888776654322  3456788776666 5444 5567899998876544


Q ss_pred             ccceeecccCCCCCceEeCCCCCEEEEEcC
Q 016318          270 GNLEAFAILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       270 g~~~~~~~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      .+.++ ..+...|.++++.++|.+.+....
T Consensus       397 t~~~~-~~lg~QP~~lav~~d~~~avv~~~  425 (603)
T KOG0318|consen  397 TKSEV-VKLGSQPKGLAVLSDGGTAVVACI  425 (603)
T ss_pred             cccce-eecCCCceeEEEcCCCCEEEEEec
Confidence            44333 245567999999999865544433

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.06  E-value=0.0047  Score=60.98  Aligned_cols=137  Identities=15%  Similarity=0.196  Sum_probs=83.3

Q ss_pred             ceEEEecCCCcE-EEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeec
Q 016318          134 LGLRFDKKTGDL-YIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       134 ~gi~~d~~~g~L-~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~  209 (391)
                      ....+++++..| |+....  ..|+.++.++++.+.+... .+    .....++.+||+ |+++.+.             
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~g----~~~~~~~SpDG~~la~~~~~-------------  263 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-EG----LNGAPAWSPDGSKLAFVLSK-------------  263 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-CC----CcCCeEECCCCCEEEEEEcc-------------
Confidence            456788844455 444332  2399999998877766422 21    123467888985 6665432             


Q ss_pred             ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceEe
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  287 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~  287 (391)
                        .+...|+.+|.++++.+.+..........+++|||+.++++...  ...|+++++.+.   +.+.+............
T Consensus       264 --~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g---~~~~lt~~~~~~~~~~~  338 (430)
T PRK00178        264 --DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG---RAERVTFVGNYNARPRL  338 (430)
T ss_pred             --CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEeecCCCCccceEE
Confidence              12347999999998887765443344567899999988776432  347888887653   22222211122334567


Q ss_pred             CCCCCE
Q 016318          288 NEKGEF  293 (391)
Q Consensus       288 d~~G~l  293 (391)
                      +++|+.
T Consensus       339 Spdg~~  344 (430)
T PRK00178        339 SADGKT  344 (430)
T ss_pred             CCCCCE
Confidence            888873

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.03  E-value=0.012  Score=57.44  Aligned_cols=146  Identities=13%  Similarity=0.107  Sum_probs=73.7

Q ss_pred             CeeEEEecCCEEEEEeCCceeEEEee-cCCCcccCCCCCCccccccccCccCcc-ceEEEecCCCcEEEEECCCCeEEEe
Q 016318           81 RGPYTGVADGRILFWDGLKWTDFAFT-SNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIADAYFGLMKVG  158 (391)
Q Consensus        81 ~~ly~~~~~g~I~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~P-~gi~~d~~~g~L~V~d~~~gl~~~d  158 (391)
                      +.+|+...+|.++.+|.+.-+..-.. ........           ........ -++.++  ++++|+++....|+.+|
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~-----------~~~~~~~~~~~~~v~--~~~v~v~~~~g~l~ald  136 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWF-----------SKNKSALLSGGVTVA--GGKVYIGSEKGQVYALN  136 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCccccc-----------ccccccccccccEEE--CCEEEEEcCCCEEEEEE
Confidence            34999999999999987611111111 00000000           00000000 123454  68999997666699999


Q ss_pred             CCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC-CC--
Q 016318          159 PEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN-LQ--  235 (391)
Q Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~--  235 (391)
                      .++|+..=- ....+...   ...++. +|.+|+.+.                  +|.|+.+|+++|+..--... ..  
T Consensus       137 ~~tG~~~W~-~~~~~~~~---ssP~v~-~~~v~v~~~------------------~g~l~ald~~tG~~~W~~~~~~~~~  193 (394)
T PRK11138        137 AEDGEVAWQ-TKVAGEAL---SRPVVS-DGLVLVHTS------------------NGMLQALNESDGAVKWTVNLDVPSL  193 (394)
T ss_pred             CCCCCCccc-ccCCCcee---cCCEEE-CCEEEEECC------------------CCEEEEEEccCCCEeeeecCCCCcc
Confidence            998863211 11111111   111222 567888763                  37899999998876422111 00  


Q ss_pred             ---CcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          236 ---FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       236 ---~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                         .....++. ++ .+++. +.+++++.++.+
T Consensus       194 ~~~~~~sP~v~-~~-~v~~~-~~~g~v~a~d~~  223 (394)
T PRK11138        194 TLRGESAPATA-FG-GAIVG-GDNGRVSAVLME  223 (394)
T ss_pred             cccCCCCCEEE-CC-EEEEE-cCCCEEEEEEcc
Confidence               00111222 23 36665 456677777654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.01  E-value=0.0053  Score=59.22  Aligned_cols=176  Identities=18%  Similarity=0.218  Sum_probs=101.5

Q ss_pred             CCeeEEEe-cCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccc-eEEEecCCCcEEEEECCCCeEEE
Q 016318           80 GRGPYTGV-ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL-GLRFDKKTGDLYIADAYFGLMKV  157 (391)
Q Consensus        80 G~~ly~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~-gi~~d~~~g~L~V~d~~~gl~~~  157 (391)
                      ++++|+.. .+|.|..+|....+.+....                     ..+.++ ++.+++++..+||++....|.++
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~---------------------~~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi   63 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIP---------------------TGGAPHAGLKFSPDGRYLYVANRDGTVSVI   63 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE----------------------STTEEEEEE-TT-SSEEEEEETTSEEEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEc---------------------CCCCceeEEEecCCCCEEEEEcCCCeEEEE
Confidence            45555544 56899999887433332221                     123444 56778744559999866569999


Q ss_pred             eCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC---
Q 016318          158 GPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN---  233 (391)
Q Consensus       158 d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---  233 (391)
                      |..++++..-.  ..|   ..|.++++++||+ +|++...                 .+.+..+|.++.+.......   
T Consensus        64 D~~~~~~v~~i--~~G---~~~~~i~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~~  121 (369)
T PF02239_consen   64 DLATGKVVATI--KVG---GNPRGIAVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGGM  121 (369)
T ss_dssp             ETTSSSEEEEE--E-S---SEEEEEEE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--EE
T ss_pred             ECCcccEEEEE--ecC---CCcceEEEcCCCCEEEEEecC-----------------CCceeEeccccccceeecccccc
Confidence            99887633211  112   3589999999996 5555522                 46899999888765433211   


Q ss_pred             -----CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEE-EEEcC
Q 016318          234 -----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW-VAIHC  299 (391)
Q Consensus       234 -----~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lw-va~~~  299 (391)
                           -....+|..++.+...+++-...++||.++....+.-.. ...+...+|.+..+|++|+++ ++...
T Consensus       122 ~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~i~~g~~~~D~~~dpdgry~~va~~~  192 (369)
T PF02239_consen  122 PVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TTIKVGRFPHDGGFDPDGRYFLVAANG  192 (369)
T ss_dssp             -TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-EEEE--TTEEEEEE-TTSSEEEEEEGG
T ss_pred             cccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-eeecccccccccccCcccceeeecccc
Confidence                 113347777888886666666778999998665421111 122233468889999999955 54444

...

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.98  E-value=0.0019  Score=56.90  Aligned_cols=220  Identities=15%  Similarity=0.130  Sum_probs=125.3

Q ss_pred             eeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEEeCCC
Q 016318           82 GPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEG  161 (391)
Q Consensus        82 ~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~  161 (391)
                      ++.++.+|..|..|....            ..|..        ..++..+....+.+.+ ++..+++-....|..+|..+
T Consensus        12 iLvsA~YDhTIRfWqa~t------------G~C~r--------Tiqh~dsqVNrLeiTp-dk~~LAaa~~qhvRlyD~~S   70 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALT------------GICSR--------TIQHPDSQVNRLEITP-DKKDLAAAGNQHVRLYDLNS   70 (311)
T ss_pred             EEEeccCcceeeeeehhc------------CeEEE--------EEecCccceeeEEEcC-CcchhhhccCCeeEEEEccC
Confidence            466778888888886541            12321        1223345667788888 55655554566788888877


Q ss_pred             CeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEE
Q 016318          162 GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLS  241 (391)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia  241 (391)
                      +.-..+.+ +++ .-+....+.+..+|+...+.+                 .+|.+-.+|...-+.....+-....|.|.
T Consensus        71 ~np~Pv~t-~e~-h~kNVtaVgF~~dgrWMyTgs-----------------eDgt~kIWdlR~~~~qR~~~~~spVn~vv  131 (311)
T KOG0315|consen   71 NNPNPVAT-FEG-HTKNVTAVGFQCDGRWMYTGS-----------------EDGTVKIWDLRSLSCQRNYQHNSPVNTVV  131 (311)
T ss_pred             CCCCceeE-Eec-cCCceEEEEEeecCeEEEecC-----------------CCceEEEEeccCcccchhccCCCCcceEE
Confidence            65433322 122 123455666777886444442                 25777778876544433333335568999


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCccce--eeee
Q 016318          242 LSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIR--HFLL  319 (391)
Q Consensus       242 ~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~--~~~~  319 (391)
                      ++|++..|++++ .++.|+..++..... ..+..-+..-....+.+.++|...+|.....+.+.|.+...-..-  +.+.
T Consensus       132 lhpnQteLis~d-qsg~irvWDl~~~~c-~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~  209 (311)
T KOG0315|consen  132 LHPNQTELISGD-QSGNIRVWDLGENSC-THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH  209 (311)
T ss_pred             ecCCcceEEeec-CCCcEEEEEccCCcc-ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh
Confidence            999988888874 567899998764311 111111111123568889999988887776665554333311110  1111


Q ss_pred             ecCccceeeeEEeecCccceEEEEECCCCCEEEEE
Q 016318          320 KLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVL  354 (391)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~  354 (391)
                      +++.           ...|.+-..++|+++.+..-
T Consensus       210 k~~a-----------h~~~il~C~lSPd~k~lat~  233 (311)
T KOG0315|consen  210 KFQA-----------HNGHILRCLLSPDVKYLATC  233 (311)
T ss_pred             heec-----------ccceEEEEEECCCCcEEEee
Confidence            1111           13456667778888776543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.98  E-value=0.0011  Score=66.00  Aligned_cols=158  Identities=16%  Similarity=0.203  Sum_probs=108.2

Q ss_pred             cccccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      .+.-.+-.++++.++|..+.+++.|+.|..|+.. ....+....                    .......+++|++ .+
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--------------------gH~~~v~~~~f~p-~g  258 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--------------------GHSTYVTSVAFSP-DG  258 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec--------------------CCCCceEEEEecC-CC
Confidence            4455677899999999988999999999988873 222221111                    1124457889998 56


Q ss_pred             cEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          144 DLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       144 ~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      ++++.....+ +...|..+++.........    .....+++.++|++.++.+.                 ++.+..||.
T Consensus       259 ~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs----~~is~~~f~~d~~~l~s~s~-----------------d~~i~vwd~  317 (456)
T KOG0266|consen  259 NLLVSGSDDGTVRIWDVRTGECVRKLKGHS----DGISGLAFSPDGNLLVSASY-----------------DGTIRVWDL  317 (456)
T ss_pred             CEEEEecCCCcEEEEeccCCeEEEeeeccC----CceEEEEECCCCCEEEEcCC-----------------CccEEEEEC
Confidence            7777666655 8888888866544332222    25688899999998887743                 588999999


Q ss_pred             CCCeEE--EeccCCCCc---ceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          223 TTKQTT--VLLRNLQFP---NGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       223 ~~~~~~--~~~~~~~~~---ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      .+++..  ........+   +.++++|++++++++ +.++.+..+++.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~-~~d~~~~~w~l~  364 (456)
T KOG0266|consen  318 ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA-SLDRTLKLWDLR  364 (456)
T ss_pred             CCCceeeeecccCCCCCCceeEEEECCCCcEEEEe-cCCCeEEEEEcc
Confidence            999843  333333344   789999999988776 545555555554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.96  E-value=0.00018  Score=68.46  Aligned_cols=159  Identities=19%  Similarity=0.260  Sum_probs=92.7

Q ss_pred             CccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEcee--ccCCCcccCCcceeecCC----CCEEEEeCCCcccchhh
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT--EAEGVPLRFTNDLDIDDE----GNVYFTDSSTNYQRRNF  204 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~--~~~~~~~~~~~~l~~d~~----G~ly~td~~~~~~~~~~  204 (391)
                      .+|.+|++.+ +|+|||++....|++++.++.....+..  ...........+++++++    +.||+.-+....     
T Consensus         2 ~~P~~~a~~p-dG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~-----   75 (331)
T PF07995_consen    2 NNPRSMAFLP-DGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE-----   75 (331)
T ss_dssp             SSEEEEEEET-TSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T-----
T ss_pred             CCceEEEEeC-CCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC-----
Confidence            4699999999 7999999875459999855433133322  111222346788899984    899998742100     


Q ss_pred             eeeecccCCCceEEEEeCCCC-----eEEEecc-------CCCCcceEEEccCCCEEEEEeC-------------CCCeE
Q 016318          205 MQLVFSAEDTGRVLKYDPTTK-----QTTVLLR-------NLQFPNGLSLSKDKSFFVFCEG-------------SVGRL  259 (391)
Q Consensus       205 ~~~~~~~~~~g~l~~~d~~~~-----~~~~~~~-------~~~~~ngia~~~d~~~l~v~et-------------~~~~I  259 (391)
                          .......+|.|+....+     ..+++..       ......+++++|||. |||+--             ..+.|
T Consensus        76 ----~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~G~i  150 (331)
T PF07995_consen   76 ----DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLRGKI  150 (331)
T ss_dssp             ----SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred             ----CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCcccccccccccceE
Confidence                00011235666654333     1222221       223456799999995 998832             23689


Q ss_pred             EEEEecccc----------CccceeecccCCCCCceEeCCC-CCEEEEEcCC
Q 016318          260 HKYWLIGEK----------AGNLEAFAILPGYPDNVRTNEK-GEFWVAIHCR  300 (391)
Q Consensus       260 ~~~~~~g~~----------~g~~~~~~~~~g~p~~i~~d~~-G~lwva~~~~  300 (391)
                      .|++.+|.-          ....++|+.--.-|-++++|+. |++|++..+.
T Consensus       151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~  202 (331)
T PF07995_consen  151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP  202 (331)
T ss_dssp             EEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred             EEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence            999987641          1134555531123668999999 9999998654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.95  E-value=0.0035  Score=56.60  Aligned_cols=107  Identities=24%  Similarity=0.277  Sum_probs=72.1

Q ss_pred             ceEEEecCCCcEEEEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecc
Q 016318          134 LGLRFDKKTGDLYIADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~  210 (391)
                      .|+.+.. +|.||.++...|   |.++|+++|++.....- +  +-.|..++++- ++.||--+..              
T Consensus        48 QGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-~--~~~FgEGit~~-~d~l~qLTWk--------------  108 (264)
T PF05096_consen   48 QGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-P--PRYFGEGITIL-GDKLYQLTWK--------------  108 (264)
T ss_dssp             EEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE--T--TT--EEEEEEE-TTEEEEEESS--------------
T ss_pred             ccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-C--ccccceeEEEE-CCEEEEEEec--------------
Confidence            5788865 789999988766   99999999976543221 1  12477788877 4489888865              


Q ss_pred             cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                         ++..+.||+++-+...-..-.....|++  .|++.||+++ ++.+|+.++.+
T Consensus       109 ---~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~  157 (264)
T PF05096_consen  109 ---EGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSD-GSSRLYFLDPE  157 (264)
T ss_dssp             ---SSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE--SSSEEEEE-TT
T ss_pred             ---CCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEEC-CccceEEECCc
Confidence               5789999998765433222234667888  5677799985 47899999854

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.93  E-value=0.017  Score=56.60  Aligned_cols=140  Identities=14%  Similarity=0.112  Sum_probs=83.8

Q ss_pred             eEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecc
Q 016318          135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~  210 (391)
                      ...+++++..|+++....   .|+.+|..+++.+.+... .+    ....+++.+||+ ++++.+.              
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~----~~~~~~~spDg~~l~~~~~~--------------  254 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PG----MNGAPAFSPDGSKLAVSLSK--------------  254 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CC----CccceEECCCCCEEEEEECC--------------
Confidence            446777444455544332   389999988866655322 21    233477888985 7666432              


Q ss_pred             cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318          211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  288 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d  288 (391)
                       .....|+.+|..+++.+.+..........++++|++.|+++...  ...|+++++++.+   ...+............+
T Consensus       255 -~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~s  330 (417)
T TIGR02800       255 -DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSWS  330 (417)
T ss_pred             -CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEEC
Confidence             12346999999888877765433333456889999987765432  2378988876532   22222112234467788


Q ss_pred             CCCCEEEEE
Q 016318          289 EKGEFWVAI  297 (391)
Q Consensus       289 ~~G~lwva~  297 (391)
                      ++|+..+..
T Consensus       331 pdg~~i~~~  339 (417)
T TIGR02800       331 PDGDLIAFV  339 (417)
T ss_pred             CCCCEEEEE
Confidence            888744433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.93  E-value=0.00084  Score=65.77  Aligned_cols=162  Identities=16%  Similarity=0.243  Sum_probs=96.3

Q ss_pred             cCccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEcee---ccCCCcccCCcceeecCC-------CCEEEEeCCCc
Q 016318          130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLAT---EAEGVPLRFTNDLDIDDE-------GNVYFTDSSTN  198 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~---~~~~~~~~~~~~l~~d~~-------G~ly~td~~~~  198 (391)
                      ...|.+|++.+ +|+|||+... ..|+++++.++..+.+..   .........+-+|+++|+       +.||++-+...
T Consensus        29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            57799999999 7999999874 459999877664433321   111111345678888754       46899853210


Q ss_pred             ccchhheeeecccCCCceEEEEeCC--CC---eEEEeccCC-----CCcceEEEccCCCEEEEEeCCC------------
Q 016318          199 YQRRNFMQLVFSAEDTGRVLKYDPT--TK---QTTVLLRNL-----QFPNGLSLSKDKSFFVFCEGSV------------  256 (391)
Q Consensus       199 ~~~~~~~~~~~~~~~~g~l~~~d~~--~~---~~~~~~~~~-----~~~ngia~~~d~~~l~v~et~~------------  256 (391)
                      -..        +.....+|.|+..+  +.   ..+++...+     ++-..|+++|||. |||+--..            
T Consensus       108 ~~~--------~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n~~~~~  178 (454)
T TIGR03606       108 GDK--------ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGANFFLPN  178 (454)
T ss_pred             CCC--------CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCcccccCcc
Confidence            000        00013467766532  11   123333322     3445799999998 89863221            


Q ss_pred             --------------------CeEEEEEecccc-C-------ccceeecccCCCCCceEeCCCCCEEEEEcCCC
Q 016318          257 --------------------GRLHKYWLIGEK-A-------GNLEAFAILPGYPDNVRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       257 --------------------~~I~~~~~~g~~-~-------g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~  301 (391)
                                          +.|+|++.+|.- .       ...++|+---.-|-++++|++|.+|++.++.+
T Consensus       179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp~  251 (454)
T TIGR03606       179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQGPN  251 (454)
T ss_pred             hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEEecCCC
Confidence                                268999888741 0       12345542112477899999999999987653

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.90  E-value=0.024  Score=54.85  Aligned_cols=143  Identities=17%  Similarity=0.159  Sum_probs=75.7

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF  152 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~  152 (391)
                      +.+++ ++ .+|+++.+|.++.++...-+..-...-.                 ....+   +..++  ++.+||++...
T Consensus        60 ~p~v~-~~-~v~v~~~~g~v~a~d~~tG~~~W~~~~~-----------------~~~~~---~p~v~--~~~v~v~~~~g  115 (377)
T TIGR03300        60 QPAVA-GG-KVYAADADGTVVALDAETGKRLWRVDLD-----------------ERLSG---GVGAD--GGLVFVGTEKG  115 (377)
T ss_pred             ceEEE-CC-EEEEECCCCeEEEEEccCCcEeeeecCC-----------------CCccc---ceEEc--CCEEEEEcCCC
Confidence            44554 34 5999999999999986511111111000                 00012   22343  67899987666


Q ss_pred             CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc
Q 016318          153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR  232 (391)
Q Consensus       153 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  232 (391)
                      .|+.+|.++|++.-- ....+...   ...++ .++.+|+...                  +|.|+.+|+++|+..--..
T Consensus       116 ~l~ald~~tG~~~W~-~~~~~~~~---~~p~v-~~~~v~v~~~------------------~g~l~a~d~~tG~~~W~~~  172 (377)
T TIGR03300       116 EVIALDAEDGKELWR-AKLSSEVL---SPPLV-ANGLVVVRTN------------------DGRLTALDAATGERLWTYS  172 (377)
T ss_pred             EEEEEECCCCcEeee-eccCceee---cCCEE-ECCEEEEECC------------------CCeEEEEEcCCCceeeEEc
Confidence            699999988864321 11111111   11122 2567777653                  4789999998887532211


Q ss_pred             CCCC------cceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          233 NLQF------PNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       233 ~~~~------~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      ....      ....++. ++ .+|+. +.+++++.+++.
T Consensus       173 ~~~~~~~~~~~~sp~~~-~~-~v~~~-~~~g~v~ald~~  208 (377)
T TIGR03300       173 RVTPALTLRGSASPVIA-DG-GVLVG-FAGGKLVALDLQ  208 (377)
T ss_pred             cCCCceeecCCCCCEEE-CC-EEEEE-CCCCEEEEEEcc
Confidence            1100      0111222 33 36655 456688888764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.014  Score=53.12  Aligned_cols=148  Identities=11%  Similarity=0.067  Sum_probs=88.7

Q ss_pred             CccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318          131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~  209 (391)
                      .+...|.+.| .++.++..+. +.|..+|....+..-+..      ...+.-.|.||+|-++.+...             
T Consensus       101 ~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~------~~~~pi~AfDp~GLifA~~~~-------------  160 (311)
T KOG1446|consen  101 KRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLN------LSGRPIAAFDPEGLIFALANG-------------  160 (311)
T ss_pred             ceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEe------cCCCcceeECCCCcEEEEecC-------------
Confidence            4566778888 5677777665 347777766443332211      123444688999988777643             


Q ss_pred             ccCCCceEEEEeCCC---CeEEE--ec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe-ccccCccceeecccCCCC
Q 016318          210 SAEDTGRVLKYDPTT---KQTTV--LL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL-IGEKAGNLEAFAILPGYP  282 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~---~~~~~--~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~-~g~~~g~~~~~~~~~g~p  282 (391)
                          ++.|-.||...   |-...  +. .....-+.+.+++||++++++ |..+.++.++. +|....+++...+-...|
T Consensus       161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~s~~~~lDAf~G~~~~tfs~~~~~~~~~  235 (311)
T KOG1446|consen  161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNASFIYLLDAFDGTVKSTFSGYPNAGNLP  235 (311)
T ss_pred             ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence                23666677532   21222  22 234567899999999999988 55667777763 343222222222212255


Q ss_pred             CceEeCCCCCEEEEEcCCCch
Q 016318          283 DNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       283 ~~i~~d~~G~lwva~~~~~~~  303 (391)
                      -.-++.|||++.++....+++
T Consensus       236 ~~a~ftPds~Fvl~gs~dg~i  256 (311)
T KOG1446|consen  236 LSATFTPDSKFVLSGSDDGTI  256 (311)
T ss_pred             eeEEECCCCcEEEEecCCCcE
Confidence            566788999988776665443

>PTZ00421 coronin; Provisional

Probab=97.88  E-value=0.027  Score=56.51  Aligned_cols=162  Identities=13%  Similarity=0.069  Sum_probs=93.8

Q ss_pred             CcceEEEcc-CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           70 GPESMAFDP-LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      .-.++++++ +++.+++++.|+.|..|+...-.......   ...          ............++|++..++++++
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~---~~l----------~~L~gH~~~V~~l~f~P~~~~iLaS  143 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS---DPI----------VHLQGHTKKVGIVSFHPSAMNVLAS  143 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC---cce----------EEecCCCCcEEEEEeCcCCCCEEEE
Confidence            346888998 78889999999999999764100000000   000          0111123446688998843455554


Q ss_pred             ECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          149 DAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       149 d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ... .-|..+|..+++........    ....+.+++.++|++.++.+.                 ++.|..||+.+++.
T Consensus       144 gs~DgtVrIWDl~tg~~~~~l~~h----~~~V~sla~spdG~lLatgs~-----------------Dg~IrIwD~rsg~~  202 (493)
T PTZ00421        144 AGADMVVNVWDVERGKAVEVIKCH----SDQITSLEWNLDGSLLCTTSK-----------------DKKLNIIDPRDGTI  202 (493)
T ss_pred             EeCCCEEEEEECCCCeEEEEEcCC----CCceEEEEEECCCCEEEEecC-----------------CCEEEEEECCCCcE
Confidence            344 44888898877543221111    124678899999998777643                 57899999988765


Q ss_pred             EEeccCC--CCcceEEEccCCCEEEEEeC---CCCeEEEEEec
Q 016318          228 TVLLRNL--QFPNGLSLSKDKSFFVFCEG---SVGRLHKYWLI  265 (391)
Q Consensus       228 ~~~~~~~--~~~ngia~~~d~~~l~v~et---~~~~I~~~~~~  265 (391)
                      ..-....  .....+.+.+++..++.+..   ..+.|..+++.
T Consensus       203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            3322221  12235667777775543321   23467777654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.86  E-value=0.012  Score=57.36  Aligned_cols=174  Identities=15%  Similarity=0.062  Sum_probs=90.5

Q ss_pred             CCcEEEEECCCCeEEEeCCCCeeEEcee---ccCCCcccCC----cceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318          142 TGDLYIADAYFGLMKVGPEGGLATSLAT---EAEGVPLRFT----NDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       142 ~g~L~V~d~~~gl~~~d~~~g~~~~~~~---~~~~~~~~~~----~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ++.+|++.....++.+|.++|+..--..   ..........    ...++ .+|.+|+++.                  +
T Consensus       205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~------------------~  265 (394)
T PRK11138        205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAY------------------N  265 (394)
T ss_pred             CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEc------------------C
Confidence            4567777655558888888775321100   0000000000    11112 2568888764                  3


Q ss_pred             ceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCC-CCCceEeCCCC
Q 016318          215 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPG-YPDNVRTNEKG  291 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g-~p~~i~~d~~G  291 (391)
                      |.++++|+++|+..- ......+..+++  ++..+|+.. .+++++.++.+.   |+ +.+..  +.+ ......+ .+|
T Consensus       266 g~l~ald~~tG~~~W-~~~~~~~~~~~~--~~~~vy~~~-~~g~l~ald~~t---G~-~~W~~~~~~~~~~~sp~v-~~g  336 (394)
T PRK11138        266 GNLVALDLRSGQIVW-KREYGSVNDFAV--DGGRIYLVD-QNDRVYALDTRG---GV-ELWSQSDLLHRLLTAPVL-YNG  336 (394)
T ss_pred             CeEEEEECCCCCEEE-eecCCCccCcEE--ECCEEEEEc-CCCeEEEEECCC---Cc-EEEcccccCCCcccCCEE-ECC
Confidence            789999999987532 222222333333  344588874 567899998653   22 22221  111 1111222 256


Q ss_pred             CEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECC-CCCEEEEEeCCCCCeeeceeEEEE
Q 016318          292 EFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEE  370 (391)
Q Consensus       292 ~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~g~~~~~is~~~~  370 (391)
                      .+|++...                                       +.+.++|+ +|+++..+.-..+..   .++-..
T Consensus       337 ~l~v~~~~---------------------------------------G~l~~ld~~tG~~~~~~~~~~~~~---~s~P~~  374 (394)
T PRK11138        337 YLVVGDSE---------------------------------------GYLHWINREDGRFVAQQKVDSSGF---LSEPVV  374 (394)
T ss_pred             EEEEEeCC---------------------------------------CEEEEEECCCCCEEEEEEcCCCcc---eeCCEE
Confidence            67766543                                       34566664 688776665432222   233345


Q ss_pred             ECCEEEEecCCCCeE
Q 016318          371 KDGKLWMGSVLMPFV  385 (391)
Q Consensus       371 ~~g~Lylgs~~~~~i  385 (391)
                      .+++||+++....-+
T Consensus       375 ~~~~l~v~t~~G~l~  389 (394)
T PRK11138        375 ADDKLLIQARDGTVY  389 (394)
T ss_pred             ECCEEEEEeCCceEE
Confidence            678999998766433

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.84  E-value=0.011  Score=54.55  Aligned_cols=108  Identities=19%  Similarity=0.171  Sum_probs=67.5

Q ss_pred             CccceEEEecCCCcEEEEECC-CC--eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheee
Q 016318          131 GRPLGLRFDKKTGDLYIADAY-FG--LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~-~g--l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~  207 (391)
                      .|.++++.++ .....|+-+. -|  ++++|..+++........++.  -|--.-++++||++.+++.+ ++        
T Consensus         5 ~RgH~~a~~p-~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEn-d~--------   72 (305)
T PF07433_consen    5 ARGHGVAAHP-TRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEN-DY--------   72 (305)
T ss_pred             ccccceeeCC-CCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEecc-cc--------
Confidence            5677888887 3333333332 23  889999988766543333322  12234577889975555533 11        


Q ss_pred             ecccCCCceEEEEeCCCC--eEEEeccCCCCcceEEEccCCCEEEEEe
Q 016318          208 VFSAEDTGRVLKYDPTTK--QTTVLLRNLQFPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~--~~~~~~~~~~~~ngia~~~d~~~l~v~e  253 (391)
                         ....|.|-.||...+  ++..+....-.|.-+.+.|||+.|.|++
T Consensus        73 ---~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN  117 (305)
T PF07433_consen   73 ---ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN  117 (305)
T ss_pred             ---CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence               234678999998733  2333344455788899999998899984

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.82  E-value=0.00032  Score=70.41  Aligned_cols=123  Identities=17%  Similarity=0.274  Sum_probs=81.7

Q ss_pred             ccCccceEEEecCCCcEEEEECC-C-------------------CeEEEeCCCC-------eeEEceecc----------
Q 016318          129 ICGRPLGLRFDKKTGDLYIADAY-F-------------------GLMKVGPEGG-------LATSLATEA----------  171 (391)
Q Consensus       129 ~~g~P~gi~~d~~~g~L~V~d~~-~-------------------gl~~~d~~~g-------~~~~~~~~~----------  171 (391)
                      ...||-++.+++.++.+|++... .                   .|+++++.++       ..+.+....          
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            36789999999988899998543 1                   3999988765       444433211          


Q ss_pred             ---CCCcccCCcceeecCCCCEEEEeCCCcccch-------hheeeecccCCCceEEEEeCCCCeEEEeccCC--CCcce
Q 016318          172 ---EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR-------NFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL--QFPNG  239 (391)
Q Consensus       172 ---~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~-------~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ng  239 (391)
                         ....+..|.+|+++++|+|||.+.+......       -..+.+....+.. +..+++.+++++.+....  ....|
T Consensus       428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG  506 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITG  506 (524)
T ss_pred             CcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCccccc
Confidence               1335789999999999999999744322111       0011111111122 566788888888776443  46789


Q ss_pred             EEEccCCCEEEEE
Q 016318          240 LSLSKDKSFFVFC  252 (391)
Q Consensus       240 ia~~~d~~~l~v~  252 (391)
                      ++++||+++|+|.
T Consensus       507 ~~fspDg~tlFvn  519 (524)
T PF05787_consen  507 PCFSPDGRTLFVN  519 (524)
T ss_pred             ceECCCCCEEEEE
Confidence            9999999998885

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.81  E-value=0.0014  Score=65.85  Aligned_cols=124  Identities=19%  Similarity=0.375  Sum_probs=74.8

Q ss_pred             CcccCCcceeecC-CCCEEEEeCCCcccchhh--eeeecccCCCceEEEEeCCCC-------eEEEec------------
Q 016318          174 VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNF--MQLVFSAEDTGRVLKYDPTTK-------QTTVLL------------  231 (391)
Q Consensus       174 ~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~~~-------~~~~~~------------  231 (391)
                      .++..|.++.+++ +|.+|++.++..-.....  ..........|.|++|++..+       +.+.+.            
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            4678999999998 589999975533110000  001112455789999998766       333332            


Q ss_pred             ------cCCCCcceEEEccCCCEEEEEeCCCCeEE------------E--------EEeccccCccceeecccC--CCCC
Q 016318          232 ------RNLQFPNGLSLSKDKSFFVFCEGSVGRLH------------K--------YWLIGEKAGNLEAFAILP--GYPD  283 (391)
Q Consensus       232 ------~~~~~~ngia~~~d~~~l~v~et~~~~I~------------~--------~~~~g~~~g~~~~~~~~~--g~p~  283 (391)
                            ..+..|.+|+++++|+ |||+|.....-.            .        ++..++..++...|...|  ....
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~t  505 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEIT  505 (524)
T ss_pred             cCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccc
Confidence                  1245788999999999 888887554311            1        112233344444454322  2346


Q ss_pred             ceEeCCCCC-EEEEEc
Q 016318          284 NVRTNEKGE-FWVAIH  298 (391)
Q Consensus       284 ~i~~d~~G~-lwva~~  298 (391)
                      |++++++|+ +||...
T Consensus       506 G~~fspDg~tlFvniQ  521 (524)
T PF05787_consen  506 GPCFSPDGRTLFVNIQ  521 (524)
T ss_pred             cceECCCCCEEEEEEe
Confidence            788999988 777654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.81  E-value=0.012  Score=56.92  Aligned_cols=140  Identities=16%  Similarity=0.130  Sum_probs=71.6

Q ss_pred             CCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEEeC
Q 016318           80 GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP  159 (391)
Q Consensus        80 G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~  159 (391)
                      ++.+|+++.+|.++.++...-+..-...      +.           ......|   .++  ++.+|++.....|+.+|+
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~------~~-----------~~~~~~p---~v~--~~~v~v~~~~g~l~a~d~  162 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAK------LS-----------SEVLSPP---LVA--NGLVVVRTNDGRLTALDA  162 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeec------cC-----------ceeecCC---EEE--CCEEEEECCCCeEEEEEc
Confidence            3448888889999999875111111000      00           0001112   222  578888876666999999


Q ss_pred             CCCeeEEceeccCCCcc--cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCc
Q 016318          160 EGGLATSLATEAEGVPL--RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFP  237 (391)
Q Consensus       160 ~~g~~~~~~~~~~~~~~--~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~  237 (391)
                      ++|+..--.. ......  ......++. +|.+|+...                  +|.++.+|+++|+..--. ....+
T Consensus       163 ~tG~~~W~~~-~~~~~~~~~~~~sp~~~-~~~v~~~~~------------------~g~v~ald~~tG~~~W~~-~~~~~  221 (377)
T TIGR03300       163 ATGERLWTYS-RVTPALTLRGSASPVIA-DGGVLVGFA------------------GGKLVALDLQTGQPLWEQ-RVALP  221 (377)
T ss_pred             CCCceeeEEc-cCCCceeecCCCCCEEE-CCEEEEECC------------------CCEEEEEEccCCCEeeee-ccccC
Confidence            8886421111 111100  011112222 357777653                  378999999888643211 11111


Q ss_pred             -------------ceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          238 -------------NGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       238 -------------ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                                   ....+  .++.+|++. ..+.++.++.+
T Consensus       222 ~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~  259 (377)
T TIGR03300       222 KGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLR  259 (377)
T ss_pred             CCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECC
Confidence                         01112  244588774 45688888864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.79  E-value=0.042  Score=54.04  Aligned_cols=137  Identities=17%  Similarity=0.196  Sum_probs=84.5

Q ss_pred             eEEEecCCCc-EEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeec
Q 016318          135 GLRFDKKTGD-LYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       135 gi~~d~~~g~-L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~  209 (391)
                      .-.+++++++ +|+.....   .|+.+|..+++.+.+.. ..+.    .....+.+|| .+.++.+.             
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~----~~~~~~SPDG~~la~~~~~-------------  253 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM----LVVSDVSKDGSKLLLTMAP-------------  253 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCc----EEeeEECCCCCEEEEEEcc-------------
Confidence            4567774443 66554432   29999999998887753 2221    1224578888 47666532             


Q ss_pred             ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEe
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  287 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~  287 (391)
                        .++..|+.+|.++++.+.+......-....++|||+.|+++....  ..|+++++++.   +.+.+.. .|. .+...
T Consensus       254 --~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g---~~~rlt~-~g~-~~~~~  326 (419)
T PRK04043        254 --KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG---SVEQVVF-HGK-NNSSV  326 (419)
T ss_pred             --CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC---CeEeCcc-CCC-cCceE
Confidence              234689999998888877654332223457999999888875432  37999998763   2222211 121 23478


Q ss_pred             CCCCCEEEE
Q 016318          288 NEKGEFWVA  296 (391)
Q Consensus       288 d~~G~lwva  296 (391)
                      +++|+..+-
T Consensus       327 SPDG~~Ia~  335 (419)
T PRK04043        327 STYKNYIVY  335 (419)
T ss_pred             CCCCCEEEE
Confidence            888884443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.79  E-value=0.056  Score=57.83  Aligned_cols=161  Identities=9%  Similarity=0.035  Sum_probs=92.7

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      -.+++++++|+.+.++..|+.|..|+......  ... ....       +.  .... ......++++++..++..++..
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~-~~~~-------~~--~~~~-~~~~v~~l~~~~~~~~~las~~  552 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGR-DIHY-------PV--VELA-SRSKLSGICWNSYIKSQVASSN  552 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccc--ccc-cccc-------ce--EEec-ccCceeeEEeccCCCCEEEEEe
Confidence            45789999999888999999999997541000  000 0000       00  0000 1123456777653344444433


Q ss_pred             CCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          151 YFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       151 ~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ..| |..+|..+++........    ......+++.+ +|+++++.+.                 +|.+..||..+++..
T Consensus       553 ~Dg~v~lWd~~~~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        553 FEGVVQVWDVARSQLVTEMKEH----EKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSI  611 (793)
T ss_pred             CCCeEEEEECCCCeEEEEecCC----CCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEE
Confidence            444 777788776433221111    13467888886 6787777643                 578888998776543


Q ss_pred             EeccCCCCcceEEEc-cCCCEEEEEeCCCCeEEEEEecc
Q 016318          229 VLLRNLQFPNGLSLS-KDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       229 ~~~~~~~~~ngia~~-~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ...........+++. ++++.+.++ +..+.|..+++..
T Consensus       612 ~~~~~~~~v~~v~~~~~~g~~latg-s~dg~I~iwD~~~  649 (793)
T PLN00181        612 GTIKTKANICCVQFPSESGRSLAFG-SADHKVYYYDLRN  649 (793)
T ss_pred             EEEecCCCeEEEEEeCCCCCEEEEE-eCCCeEEEEECCC
Confidence            332222344566674 467755444 6678898888754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.77  E-value=0.0033  Score=57.99  Aligned_cols=162  Identities=17%  Similarity=0.153  Sum_probs=93.1

Q ss_pred             eEEEccCCCeeEEEec-----CCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           73 SMAFDPLGRGPYTGVA-----DGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~-----~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      .-++++||+.+|++-.     .|.|-.+|.. .+..+...+                    ..+--|+-+.+++++..|.
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~--------------------s~GIGPHel~l~pDG~tLv  114 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP--------------------SHGIGPHELLLMPDGETLV  114 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec--------------------CCCcChhhEEEcCCCCEEE
Confidence            3467889998898754     3888888877 444443222                    1133499999998444899


Q ss_pred             EEECCC------------------CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318          147 IADAYF------------------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       147 V~d~~~------------------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      |++.+-                  .|..+|..+|++..-....+.....+...|+++.+|.+|++.....-.. +     
T Consensus       115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~-~-----  188 (305)
T PF07433_consen  115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG-D-----  188 (305)
T ss_pred             EEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC-c-----
Confidence            986421                  2444444555422211111112235788999999999999963211000 0     


Q ss_pred             cccCCCceEEEEeCCCCeEEEec------cCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLL------RNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~------~~~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                          ..--|..+.. ++..+.+.      ..+ .+.-.|+++.+++.+.++.-..+++..++.+
T Consensus       189 ----~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~  247 (305)
T PF07433_consen  189 ----APPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA  247 (305)
T ss_pred             ----cCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence                0011222322 22222221      112 3556899999999888887677788888643

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.76  E-value=0.028  Score=55.43  Aligned_cols=96  Identities=13%  Similarity=0.159  Sum_probs=57.0

Q ss_pred             cceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCC--CCeEEEeccCCCCcceEEEccCCCEEEEEeCC-
Q 016318          180 NDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT--TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS-  255 (391)
Q Consensus       180 ~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~-  255 (391)
                      ...+..+||+ |+++...               .+.-.++.++..  +++.+.+..........+++|||+.|+++... 
T Consensus       284 ~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~  348 (428)
T PRK01029        284 GNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK  348 (428)
T ss_pred             CCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence            3568899996 6665421               112357777653  34444443333334467899999988876543 


Q ss_pred             -CCeEEEEEeccccCccceeecccCCCCCceEeCCCCCE
Q 016318          256 -VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEF  293 (391)
Q Consensus       256 -~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~l  293 (391)
                       ..+|+++++++.   +.+.+...++...+...+++|+.
T Consensus       349 g~~~I~v~dl~~g---~~~~Lt~~~~~~~~p~wSpDG~~  384 (428)
T PRK01029        349 GVRQICVYDLATG---RDYQLTTSPENKESPSWAIDSLH  384 (428)
T ss_pred             CCcEEEEEECCCC---CeEEccCCCCCccceEECCCCCE
Confidence             347999987653   33333322333456777888873

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=97.74  E-value=0.015  Score=52.64  Aligned_cols=194  Identities=14%  Similarity=0.182  Sum_probs=116.6

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~  151 (391)
                      .+.|+|+|..+.++..|..|+-|+-. ..+.+...                    ....+...++.+.+++..++-+...
T Consensus        52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l--------------------kgHsgAVM~l~~~~d~s~i~S~gtD  111 (338)
T KOG0265|consen   52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL--------------------KGHSGAVMELHGMRDGSHILSCGTD  111 (338)
T ss_pred             EEEECCCCCeEeecCCcceEEEEeccccccceeee--------------------ccccceeEeeeeccCCCEEEEecCC
Confidence            45789999988889999999999743 22222211                    1124667788888844445556566


Q ss_pred             CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318          152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       152 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  231 (391)
                      +.+..+|.++|+...--..    ...+.|.+...+.|-..+.+.                ..++.+-.||..+++.....
T Consensus       112 k~v~~wD~~tG~~~rk~k~----h~~~vNs~~p~rrg~~lv~Sg----------------sdD~t~kl~D~R~k~~~~t~  171 (338)
T KOG0265|consen  112 KTVRGWDAETGKRIRKHKG----HTSFVNSLDPSRRGPQLVCSG----------------SDDGTLKLWDIRKKEAIKTF  171 (338)
T ss_pred             ceEEEEecccceeeehhcc----ccceeeecCccccCCeEEEec----------------CCCceEEEEeecccchhhcc
Confidence            7899999999865432111    124677777666775555543                34678888998766554444


Q ss_pred             cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCC---CCceEeCCCCCEEEEEcCCCchhhhhh
Q 016318          232 RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY---PDNVRTNEKGEFWVAIHCRRSLYSHLM  308 (391)
Q Consensus       232 ~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~---p~~i~~d~~G~lwva~~~~~~~~~~~l  308 (391)
                      +.-..-..+++..++.-+..+ .-++.|..+++...     +....+.|.   ..+|...++|.+..+..-...+..+.+
T Consensus       172 ~~kyqltAv~f~d~s~qv~sg-gIdn~ikvWd~r~~-----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~  245 (338)
T KOG0265|consen  172 ENKYQLTAVGFKDTSDQVISG-GIDNDIKVWDLRKN-----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV  245 (338)
T ss_pred             ccceeEEEEEecccccceeec-cccCceeeeccccC-----cceEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence            333344566666655534433 33455666654211     111122333   346778888888877665555555555


Q ss_pred             hcCc
Q 016318          309 ALYP  312 (391)
Q Consensus       309 ~~~~  312 (391)
                      +++-
T Consensus       246 rp~~  249 (338)
T KOG0265|consen  246 RPFA  249 (338)
T ss_pred             cccC
Confidence            5543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.74  E-value=0.023  Score=50.77  Aligned_cols=100  Identities=19%  Similarity=0.188  Sum_probs=59.6

Q ss_pred             CCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          142 TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       142 ~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      ++.+|+++....|+.+|..+|+..--.. .++ ++..+   ....++.+|+....                  ++++.+|
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~~~-~~~~~---~~~~~~~v~v~~~~------------------~~l~~~d   92 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFD-LPG-PISGA---PVVDGGRVYVGTSD------------------GSLYALD   92 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEE-CSS-CGGSG---EEEETTEEEEEETT------------------SEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEee-ccc-cccce---eeecccccccccce------------------eeeEecc
Confidence            7899999877779999998886432211 111 11111   23346788888743                  6899999


Q ss_pred             CCCCeEEEec-c-C---CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          222 PTTKQTTVLL-R-N---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       222 ~~~~~~~~~~-~-~---~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      ..+|+..--. . .   ...........+++.++++.. ++.|+.++++
T Consensus        93 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~  140 (238)
T PF13360_consen   93 AKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPK  140 (238)
T ss_dssp             TTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETT
T ss_pred             cCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecC
Confidence            8888764331 1 1   111112222234666777754 6788888855

...

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.73  E-value=0.014  Score=51.14  Aligned_cols=235  Identities=12%  Similarity=0.090  Sum_probs=124.8

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF  152 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~  152 (391)
                      .+-+..+|+.-.++..+..|--|++.+-..+...+.                    .+...+.++...++-.+--+...+
T Consensus        22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg--------------------hG~EVlD~~~s~Dnskf~s~GgDk   81 (307)
T KOG0316|consen   22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG--------------------HGHEVLDAALSSDNSKFASCGGDK   81 (307)
T ss_pred             EEEEccCCCEEEEcCCCceEEeecccccceeeeecC--------------------CCceeeeccccccccccccCCCCc
Confidence            456778999666777777777777762222211111                    122344444444222232222234


Q ss_pred             CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec-
Q 016318          153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-  231 (391)
Q Consensus       153 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-  231 (391)
                      -++.+|..||++-+-.....    ...|.+.+..+..+.++.+-                 +..+-.||-.+...+.+. 
T Consensus        82 ~v~vwDV~TGkv~Rr~rgH~----aqVNtV~fNeesSVv~Sgsf-----------------D~s~r~wDCRS~s~ePiQi  140 (307)
T KOG0316|consen   82 AVQVWDVNTGKVDRRFRGHL----AQVNTVRFNEESSVVASGSF-----------------DSSVRLWDCRSRSFEPIQI  140 (307)
T ss_pred             eEEEEEcccCeeeeeccccc----ceeeEEEecCcceEEEeccc-----------------cceeEEEEcccCCCCccch
Confidence            59999999997654333222    35788999888888877643                 346777887666554432 


Q ss_pred             --cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC-CceEeCCCCCEEEEEcCCCch-hh--
Q 016318          232 --RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP-DNVRTNEKGEFWVAIHCRRSL-YS--  305 (391)
Q Consensus       232 --~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p-~~i~~d~~G~lwva~~~~~~~-~~--  305 (391)
                        +-......|.+  .+. .+++.+..+++.+|++.-   |  ..+.+.-|.| ..+.++++|++-++..-.... ++  
T Consensus       141 ldea~D~V~Si~v--~~h-eIvaGS~DGtvRtydiR~---G--~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk  212 (307)
T KOG0316|consen  141 LDEAKDGVSSIDV--AEH-EIVAGSVDGTVRTYDIRK---G--TLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDK  212 (307)
T ss_pred             hhhhcCceeEEEe--ccc-EEEeeccCCcEEEEEeec---c--eeehhhcCCcceeEEecCCCCEEEEeeccceeeeccc
Confidence              11122233444  344 567777788999998753   2  2233323444 678999999976664433222 11  


Q ss_pred             ---hhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECC-CCCEEEEEeC
Q 016318          306 ---HLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSP-EGKILQVLED  356 (391)
Q Consensus       306 ---~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~  356 (391)
                         ..|..|....+.-.++.--.......++++...+.+...|. ++.++..+..
T Consensus       213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~  267 (307)
T KOG0316|consen  213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV  267 (307)
T ss_pred             chhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc
Confidence               13333433333333332222222233445555566665553 4444444443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.032  Score=55.52  Aligned_cols=191  Identities=18%  Similarity=0.216  Sum_probs=114.9

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      --++.+.++|+.+.++..++.+..++...... . .      ..          ..........+++|.+ ++...++.+
T Consensus       162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~-~------~~----------~l~~h~~~v~~~~fs~-d~~~l~s~s  222 (456)
T KOG0266|consen  162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-N-L------LR----------ELSGHTRGVSDVAFSP-DGSYLLSGS  222 (456)
T ss_pred             eEEEEEcCCCCeEEEccCCCcEEEeecccccc-h-h------hc----------cccccccceeeeEECC-CCcEEEEec
Confidence            34467788999777777777666665531110 0 0      00          0111123356889998 677655544


Q ss_pred             CC-CeEEEeC-CCCe-eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          151 YF-GLMKVGP-EGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       151 ~~-gl~~~d~-~~g~-~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      .. .|..+|. +.+. ++.+..+     ....+.+++.++|++.++.+.                 ++.+..+|..+++.
T Consensus       223 ~D~tiriwd~~~~~~~~~~l~gH-----~~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~  280 (456)
T KOG0266|consen  223 DDKTLRIWDLKDDGRNLKTLKGH-----STYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGEC  280 (456)
T ss_pred             CCceEEEeeccCCCeEEEEecCC-----CCceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeE
Confidence            43 4777777 3322 3333221     235699999999998888754                 57888999988776


Q ss_pred             EEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc--CCCCCceEeCCCCCEEEEEcCCCch
Q 016318          228 TVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PGYPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       228 ~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~--~g~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      ...... -..-+++++++|++.++.+ ...+.|..+++......-.+.+...  +..-..+.++++|.+.+.....+.+
T Consensus       281 ~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~  358 (456)
T KOG0266|consen  281 VRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTL  358 (456)
T ss_pred             EEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeE
Confidence            554433 3467789999999966665 6677888887654321101222221  1112567888999866555554443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.71  E-value=0.027  Score=55.62  Aligned_cols=138  Identities=12%  Similarity=0.094  Sum_probs=82.7

Q ss_pred             cceEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeee
Q 016318          133 PLGLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~  208 (391)
                      .....+++++..|..+....   .|+.+|..+++.+.+.. ..+    ....+++.+||+ |+++.+.            
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPDG~~La~~~~~------------  268 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPDGSRLAFASSK------------  268 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCCCCEEEEEEec------------
Confidence            45678888444454443322   39999998887655532 222    123578899996 5554321            


Q ss_pred             cccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceE
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVR  286 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~  286 (391)
                         .+.-.|+.+|.++++.+.+..........+++|||+.++++...  ..+||.++..+.   ..+.+ ...+  .+..
T Consensus       269 ---~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~---~~~~l-~~~~--~~~~  339 (429)
T PRK01742        269 ---DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG---GASLV-GGRG--YSAQ  339 (429)
T ss_pred             ---CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC---CeEEe-cCCC--CCcc
Confidence               11235888998888877776544455678999999987776433  346777776542   12222 2112  3456


Q ss_pred             eCCCCCEEEE
Q 016318          287 TNEKGEFWVA  296 (391)
Q Consensus       287 ~d~~G~lwva  296 (391)
                      ++++|+..+.
T Consensus       340 ~SpDG~~ia~  349 (429)
T PRK01742        340 ISADGKTLVM  349 (429)
T ss_pred             CCCCCCEEEE
Confidence            7888874433

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.70  E-value=6.8e-05  Score=43.25  Aligned_cols=28  Identities=14%  Similarity=0.530  Sum_probs=25.1

Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 016318          234 LQFPNGLSLSKDKSFFVFCEGSVGRLHKY  262 (391)
Q Consensus       234 ~~~~ngia~~~d~~~l~v~et~~~~I~~~  262 (391)
                      +..|.||+++++|+ +||+|+.++||++|
T Consensus         1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence            35799999998888 99999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.69  E-value=0.002  Score=61.55  Aligned_cols=191  Identities=12%  Similarity=0.157  Sum_probs=118.5

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .-.++.+..+|..+.+++.|..|--||.+.-.....+                     +..-.|..+.+.+++.+++++.
T Consensus       260 ~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f---------------------~~~~~~~cvkf~pd~~n~fl~G  318 (503)
T KOG0282|consen  260 PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF---------------------HLDKVPTCVKFHPDNQNIFLVG  318 (503)
T ss_pred             hhhhhhccccCCeeeeeecceeeeeeccccceEEEEE---------------------ecCCCceeeecCCCCCcEEEEe
Confidence            4456667777776777777777766666521111111                     1234577888888654666654


Q ss_pred             CC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          150 AY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       150 ~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      .. +.|..+|..++++-.-.    +..+...+++.+-++|.-+++++-                 .+.+..|+.......
T Consensus       319 ~sd~ki~~wDiRs~kvvqeY----d~hLg~i~~i~F~~~g~rFissSD-----------------dks~riWe~~~~v~i  377 (503)
T KOG0282|consen  319 GSDKKIRQWDIRSGKVVQEY----DRHLGAILDITFVDEGRRFISSSD-----------------DKSVRIWENRIPVPI  377 (503)
T ss_pred             cCCCcEEEEeccchHHHHHH----HhhhhheeeeEEccCCceEeeecc-----------------CccEEEEEcCCCccc
Confidence            44 55999999888633211    123456788999889888887643                 344555554433322


Q ss_pred             Eec--cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc-cCccceeecc--cCCCCCceEeCCCCCEEEEEcCCCch
Q 016318          229 VLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE-KAGNLEAFAI--LPGYPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       229 ~~~--~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~-~~g~~~~~~~--~~g~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      .+.  ..+..--.++++|++. .+.+.+-.++|..|...-. +....+.|..  .+|++-.+.+++||.+.+...+...+
T Consensus       378 k~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v  456 (503)
T KOG0282|consen  378 KNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKV  456 (503)
T ss_pred             hhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccE
Confidence            221  1122223688999999 6677888899999875433 2333445553  57888899999999988776655444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.67  E-value=0.0013  Score=62.58  Aligned_cols=180  Identities=14%  Similarity=0.141  Sum_probs=109.5

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      +=|.+.+.++++.|.+....|.|..+....-..+..        |             ..-|...+++|+.++..||++.
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s--------~-------------KieG~v~~~~fsSdsk~l~~~~  363 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS--------F-------------KIEGVVSDFTFSSDSKELLASG  363 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe--------e-------------eeccEEeeEEEecCCcEEEEEc
Confidence            456778888998777777788888775541111100        1             1246678899998566688877


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe---
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ---  226 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---  226 (391)
                      .+..|+.+|.....+...... +|.  ..-..++...+|. |++..+                ..|-|-.||.++--   
T Consensus       364 ~~GeV~v~nl~~~~~~~rf~D-~G~--v~gts~~~S~ng~-ylA~GS----------------~~GiVNIYd~~s~~~s~  423 (514)
T KOG2055|consen  364 GTGEVYVWNLRQNSCLHRFVD-DGS--VHGTSLCISLNGS-YLATGS----------------DSGIVNIYDGNSCFAST  423 (514)
T ss_pred             CCceEEEEecCCcceEEEEee-cCc--cceeeeeecCCCc-eEEecc----------------CcceEEEeccchhhccC
Confidence            666799999987654433222 121  1345577778888 555422                25777788854321   


Q ss_pred             -EEEe--ccCC-CCcceEEEccCCCEEEEEeCCC-CeEEEEEeccccCccceeecccC------CCCCceEeCCCCCEEE
Q 016318          227 -TTVL--LRNL-QFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFAILP------GYPDNVRTNEKGEFWV  295 (391)
Q Consensus       227 -~~~~--~~~~-~~~ngia~~~d~~~l~v~et~~-~~I~~~~~~g~~~g~~~~~~~~~------g~p~~i~~d~~G~lwv  295 (391)
                       .+.+  .+.+ ...+.++|++|.+.|.++.+.. +.+..+++     ....+|.+.|      |.+..+++++.|.+..
T Consensus       424 ~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-----PS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lA  498 (514)
T KOG2055|consen  424 NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-----PSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLA  498 (514)
T ss_pred             CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-----cceeeeccCCCCCCcccceEEEEecCCCceEE
Confidence             1111  1222 2356889999999877775433 34444443     2345666544      4678899999776543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.67  E-value=0.0003  Score=52.74  Aligned_cols=67  Identities=27%  Similarity=0.469  Sum_probs=47.7

Q ss_pred             eEEEecCCCcEEEEECC-----------------CC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeC
Q 016318          135 GLRFDKKTGDLYIADAY-----------------FG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDS  195 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~-----------------~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~  195 (391)
                      ++.+++++|.+|++|+.                 .| |+++||.|++.+.+...     +.+||+|++++|+. +.|+++
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-----L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-----LYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-----ESSEEEEEE-TTSSEEEEEEG
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-----CCccCeEEEcCCCCEEEEEec
Confidence            46777744899999862                 13 99999999998888654     56999999999996 777775


Q ss_pred             CCcccchhheeeecccCCCceEEEEeCC
Q 016318          196 STNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      .                 ..||.+|-.+
T Consensus        77 ~-----------------~~Ri~rywl~   87 (89)
T PF03088_consen   77 G-----------------RYRILRYWLK   87 (89)
T ss_dssp             G-----------------GTEEEEEESS
T ss_pred             c-----------------CceEEEEEEe
Confidence            4                 3688888543

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.63  E-value=0.019  Score=54.49  Aligned_cols=131  Identities=18%  Similarity=0.192  Sum_probs=78.9

Q ss_pred             ccceEEEecCCCcEEEEECCC------C-eEEEeCCCCeeEEceecc---------CC-CcccCCcceeecCCCC-EEEE
Q 016318          132 RPLGLRFDKKTGDLYIADAYF------G-LMKVGPEGGLATSLATEA---------EG-VPLRFTNDLDIDDEGN-VYFT  193 (391)
Q Consensus       132 ~P~gi~~d~~~g~L~V~d~~~------g-l~~~d~~~g~~~~~~~~~---------~~-~~~~~~~~l~~d~~G~-ly~t  193 (391)
                      .+-||++.+ +|.+||++.+.      . |++++.++...+.+..+.         .+ ..-....+|++.++|+ ||++
T Consensus        86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            345899965 89999999877      4 999999854444442111         11 1234677899999998 8888


Q ss_pred             eCCCcccchhheeeecccCCCceEEEEeCCCCe--EEEe---cc------CCCCcceEEEccCCCEEEEEeCC-------
Q 016318          194 DSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ--TTVL---LR------NLQFPNGLSLSKDKSFFVFCEGS-------  255 (391)
Q Consensus       194 d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~---~~------~~~~~ngia~~~d~~~l~v~et~-------  255 (391)
                      ..+...+-...  .-......-++++||+.+..  ...+   .+      ....+..++.-+|++ ++|-|..       
T Consensus       165 ~E~~l~~d~~~--~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~  241 (326)
T PF13449_consen  165 MESPLKQDGPR--ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGN  241 (326)
T ss_pred             ECccccCCCcc--cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccc
Confidence            75532211100  00011112478999987622  2222   22      223445566777888 8888876       


Q ss_pred             CCeEEEEEecc
Q 016318          256 VGRLHKYWLIG  266 (391)
Q Consensus       256 ~~~I~~~~~~g  266 (391)
                      ..+|+++++.+
T Consensus       242 ~~ri~~v~l~~  252 (326)
T PF13449_consen  242 YKRIYRVDLSD  252 (326)
T ss_pred             eEEEEEEEccc
Confidence            34677777654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.63  E-value=0.0049  Score=59.02  Aligned_cols=78  Identities=15%  Similarity=0.163  Sum_probs=58.1

Q ss_pred             eEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEE
Q 016318          216 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFW  294 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lw  294 (391)
                      .|..||..+++.+....++...-.+.+++||+++.+++ .+..||.++++.   |+.+.... ..|+..++...++++ |
T Consensus       383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididn---gnv~~idkS~~~lItdf~~~~nsr-~  457 (668)
T COG4946         383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDN---GNVRLIDKSEYGLITDFDWHPNSR-W  457 (668)
T ss_pred             eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecC---CCeeEecccccceeEEEEEcCCce-e
Confidence            68889999999999988888888999999999888884 467899999875   33443332 335566677777664 5


Q ss_pred             EEEc
Q 016318          295 VAIH  298 (391)
Q Consensus       295 va~~  298 (391)
                      +|-.
T Consensus       458 iAYa  461 (668)
T COG4946         458 IAYA  461 (668)
T ss_pred             EEEe
Confidence            5543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.62  E-value=0.0098  Score=56.01  Aligned_cols=189  Identities=9%  Similarity=0.023  Sum_probs=108.4

Q ss_pred             EEEccCCCeeEEEecCCEEEEE--eCC-ceeEEEeecCCCcccCCCCCCccccccccCccCcc-ceEEEecCCCcEEEEE
Q 016318           74 MAFDPLGRGPYTGVADGRILFW--DGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIAD  149 (391)
Q Consensus        74 i~~d~~G~~ly~~~~~g~I~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P-~gi~~d~~~g~L~V~d  149 (391)
                      +.++++|+.+-+++.|.....|  ..+ .++.+..        |.             ....| .-|.++|++..|..|.
T Consensus       230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~t--------lv-------------gh~~~V~yi~wSPDdryLlaCg  288 (519)
T KOG0293|consen  230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKT--------LV-------------GHSQPVSYIMWSPDDRYLLACG  288 (519)
T ss_pred             EEEcCCCeeEeeccCCceEEEEEEecCcceeeeee--------ee-------------cccCceEEEEECCCCCeEEecC
Confidence            4577889877777777544444  333 3222211        11             01223 4578899444444443


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                      ...-+...|.++|.........-   ...+...+--|||.=+++.+.                 ++.++.+|.++.....
T Consensus       289 ~~e~~~lwDv~tgd~~~~y~~~~---~~S~~sc~W~pDg~~~V~Gs~-----------------dr~i~~wdlDgn~~~~  348 (519)
T KOG0293|consen  289 FDEVLSLWDVDTGDLRHLYPSGL---GFSVSSCAWCPDGFRFVTGSP-----------------DRTIIMWDLDGNILGN  348 (519)
T ss_pred             chHheeeccCCcchhhhhcccCc---CCCcceeEEccCCceeEecCC-----------------CCcEEEecCCcchhhc
Confidence            34558888999887655433211   124555666778766666543                 5678888876554333


Q ss_pred             eccCC--CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcccee-ecccCCCCCceEeCCCCCEEEEEcCCCchhhh
Q 016318          230 LLRNL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA-FAILPGYPDNVRTNEKGEFWVAIHCRRSLYSH  306 (391)
Q Consensus       230 ~~~~~--~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~-~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~  306 (391)
                      . ++.  +....+++++||++++... ...+|..|+....    .+. ..........+.++.+|.+.+..-......+|
T Consensus       349 W-~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~----~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LW  422 (519)
T KOG0293|consen  349 W-EGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREAR----VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLW  422 (519)
T ss_pred             c-cccccceeEEEEEcCCCcEEEEEe-cccceeeechhhh----hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence            3 222  2345799999999887764 4567888875431    111 11111224578889999977765555555444


Q ss_pred             hhh
Q 016318          307 LMA  309 (391)
Q Consensus       307 ~l~  309 (391)
                      .+.
T Consensus       423 Dl~  425 (519)
T KOG0293|consen  423 DLE  425 (519)
T ss_pred             ecc
Confidence            443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.60  E-value=0.029  Score=51.32  Aligned_cols=227  Identities=16%  Similarity=0.197  Sum_probs=119.2

Q ss_pred             cCccceEEEecCCCcEEEEECCCC---eEEEeCCC--CeeEEceeccC---C-CcccCCcceeecCCCCEEEEeCCCccc
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG---LMKVGPEG--GLATSLATEAE---G-VPLRFTNDLDIDDEGNVYFTDSSTNYQ  200 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g---l~~~d~~~--g~~~~~~~~~~---~-~~~~~~~~l~~d~~G~ly~td~~~~~~  200 (391)
                      .-.|+||++.+ .+-+||+|...+   +|-.++++  +....+.-.+.   + .....|.++++.....+-++.... -.
T Consensus        22 L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~-~~   99 (336)
T TIGR03118        22 LRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI-TG   99 (336)
T ss_pred             ccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc-cc
Confidence            55699999999 889999998876   34444221  11111211111   1 112356666665433322222110 00


Q ss_pred             chhheeeecccCCCceEEEEeCCCCeE------EEeccC--CCCcceEEEccC--CCEEEEEeCCCCeEEEEEeccccCc
Q 016318          201 RRNFMQLVFSAEDTGRVLKYDPTTKQT------TVLLRN--LQFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLIGEKAG  270 (391)
Q Consensus       201 ~~~~~~~~~~~~~~g~l~~~d~~~~~~------~~~~~~--~~~~ngia~~~d--~~~l~v~et~~~~I~~~~~~g~~~g  270 (391)
                      -..|+.    ...+|.|--|.+.-+..      .++...  ..--.|+|+...  +++||.++-.+++|-+|+-.-.+..
T Consensus       100 ~a~Fif----~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~  175 (336)
T TIGR03118       100 PSRFLF----VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP  175 (336)
T ss_pred             ceeEEE----EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence            000111    12246777777643322      222211  122347777643  7889999999999999963211111


Q ss_pred             cceeecc--cCC--CCCceEeCCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECC
Q 016318          271 NLEAFAI--LPG--YPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSP  346 (391)
Q Consensus       271 ~~~~~~~--~~g--~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~  346 (391)
                      ....|.+  +|.  -|-||.- -.|++||+-........                         -.+.+..++.|-.||.
T Consensus       176 ~~g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~-------------------------d~v~G~G~G~VdvFd~  229 (336)
T TIGR03118       176 LPGSFIDPALPAGYAPFNVQN-LGGTLYVTYAQQDADRN-------------------------DEVAGAGLGYVNVFTL  229 (336)
T ss_pred             CCCCccCCCCCCCCCCcceEE-ECCeEEEEEEecCCccc-------------------------ccccCCCcceEEEEcC
Confidence            1122443  332  2456643 45789997543211000                         0123456688999999


Q ss_pred             CCCEEEEEeCCCCCeeeceeEEE------EECCEEEEecCCCCeEEEEe
Q 016318          347 EGKILQVLEDSKGKVVKAISEVE------EKDGKLWMGSVLMPFVAVYD  389 (391)
Q Consensus       347 ~g~~~~~~~~~~g~~~~~is~~~------~~~g~Lylgs~~~~~i~~~~  389 (391)
                      +|+.++.+.+. |........+.      .-.|.|.+|.+..-.|..++
T Consensus       230 ~G~l~~r~as~-g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD  277 (336)
T TIGR03118       230 NGQLLRRVASS-GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYD  277 (336)
T ss_pred             CCcEEEEeccC-CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEec
Confidence            99999888542 22222111111      23488999999988888776

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.58  E-value=0.028  Score=50.24  Aligned_cols=174  Identities=20%  Similarity=0.220  Sum_probs=89.7

Q ss_pred             EEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCe
Q 016318           75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (391)
Q Consensus        75 ~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl  154 (391)
                      ++..+|. +|+++.++.|+.++...-+..-...      +.           ......|   ..+  ++.+||+...+.|
T Consensus        32 ~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~------~~-----------~~~~~~~---~~~--~~~v~v~~~~~~l   88 (238)
T PF13360_consen   32 AVPDGGR-VYVASGDGNLYALDAKTGKVLWRFD------LP-----------GPISGAP---VVD--GGRVYVGTSDGSL   88 (238)
T ss_dssp             EEEETTE-EEEEETTSEEEEEETTTSEEEEEEE------CS-----------SCGGSGE---EEE--TTEEEEEETTSEE
T ss_pred             EEEeCCE-EEEEcCCCEEEEEECCCCCEEEEee------cc-----------cccccee---eec--ccccccccceeee
Confidence            4433454 9999999999999985222221111      00           0001112   232  6889999866679


Q ss_pred             EEEeCCCCeeEEc-eecc-CCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc
Q 016318          155 MKVGPEGGLATSL-ATEA-EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR  232 (391)
Q Consensus       155 ~~~d~~~g~~~~~-~~~~-~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  232 (391)
                      +.+|..+|++.-- .... +..........+++ ++.+|+...                  ++.|+.+|+++|+..--..
T Consensus        89 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~  149 (238)
T PF13360_consen   89 YALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKLLWKYP  149 (238)
T ss_dssp             EEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEEEEEEE
T ss_pred             EecccCCcceeeeeccccccccccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcEEEEee
Confidence            9999888865432 1111 11112223334444 456777774                  3789999999998733222


Q ss_pred             CCCCc------------ceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEE
Q 016318          233 NLQFP------------NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAI  297 (391)
Q Consensus       233 ~~~~~------------ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~  297 (391)
                      . ..+            ++-.+..++ .+|++.. .+++..+++..   ++. .+....+.+.......++.+|++.
T Consensus       150 ~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~d~~t---g~~-~w~~~~~~~~~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  150 V-GEPRGSSPISSFSDINGSPVISDG-RVYVSSG-DGRVVAVDLAT---GEK-LWSKPISGIYSLPSVDGGTLYVTS  219 (238)
T ss_dssp             S-STT-SS--EEEETTEEEEEECCTT-EEEEECC-TSSEEEEETTT---TEE-EEEECSS-ECECEECCCTEEEEEE
T ss_pred             c-CCCCCCcceeeecccccceEEECC-EEEEEcC-CCeEEEEECCC---CCE-EEEecCCCccCCceeeCCEEEEEe
Confidence            1 111            122222344 5888744 44556556543   322 232212223332334456677766

...

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.58  E-value=0.0053  Score=61.94  Aligned_cols=223  Identities=16%  Similarity=0.162  Sum_probs=123.8

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecC--CC--------cccCCCCCCccccccccCccCccceE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSN--NR--------SELCNPKPIATSYLKNEHICGRPLGL  136 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~g~P~gi  136 (391)
                      ++-.+..+.+++.++-.|..|..|.+|.-.  +.+.+.....  +.        ....+........ ..-..+|-..|.
T Consensus       379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~-~L~GH~GPVyg~  457 (707)
T KOG0263|consen  379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR-TLYGHSGPVYGC  457 (707)
T ss_pred             CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE-EeecCCCceeee
Confidence            344556677788877778888888877543  2222111000  00        0000100000000 111234556799


Q ss_pred             EEecCCCcEEEEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCC
Q 016318          137 RFDKKTGDLYIADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       137 ~~d~~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      .|.| +.++.+..+..+   |+.++..+..+..  ..    ......++.+.|.|..+.|. +              +..
T Consensus       458 sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y--~G----H~~PVwdV~F~P~GyYFata-s--------------~D~  515 (707)
T KOG0263|consen  458 SFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIY--KG----HLAPVWDVQFAPRGYYFATA-S--------------HDQ  515 (707)
T ss_pred             eecc-cccceeeccCCcceeeeecccceeEEEe--cC----CCcceeeEEecCCceEEEec-C--------------CCc
Confidence            9999 788888766533   6666655432221  11    11235667888887544444 3              355


Q ss_pred             CceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE-eccccCccceeecccCCCCCceEeCCCCC
Q 016318          214 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW-LIGEKAGNLEAFAILPGYPDNVRTNEKGE  292 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~-~~g~~~g~~~~~~~~~g~p~~i~~d~~G~  292 (391)
                      +.+|+..|- +.-.+++...+..-..+.++|+.++  ++.....+-.|.| +..  ....++|....+-...+++++.|+
T Consensus       516 tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y--~aTGSsD~tVRlWDv~~--G~~VRiF~GH~~~V~al~~Sp~Gr  590 (707)
T KOG0263|consen  516 TARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNY--VATGSSDRTVRLWDVST--GNSVRIFTGHKGPVTALAFSPCGR  590 (707)
T ss_pred             eeeeeeccc-CCchhhhcccccccceEEECCcccc--cccCCCCceEEEEEcCC--CcEEEEecCCCCceEEEEEcCCCc
Confidence            667887775 4556667777778888999999984  3433334444444 321  245677764444456789999998


Q ss_pred             EEEEEcCCCchhhhhhhcCccceeeee
Q 016318          293 FWVAIHCRRSLYSHLMALYPKIRHFLL  319 (391)
Q Consensus       293 lwva~~~~~~~~~~~l~~~~~~~~~~~  319 (391)
                      +.+.....+.+..|.++.-.....++.
T Consensus       591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~  617 (707)
T KOG0263|consen  591 YLASGDEDGLIKIWDLANGSLVKQLKG  617 (707)
T ss_pred             eEeecccCCcEEEEEcCCCcchhhhhc
Confidence            776666666665555544333333333

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.51  E-value=0.00096  Score=65.42  Aligned_cols=118  Identities=17%  Similarity=0.182  Sum_probs=78.6

Q ss_pred             cCccceEEEecCCCcEEEEECCC-----------------CeEEEeCCCC-------eeEEceeccCC------------
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYF-----------------GLMKVGPEGG-------LATSLATEAEG------------  173 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~-----------------gl~~~d~~~g-------~~~~~~~~~~~------------  173 (391)
                      ..||-++++.+..+++|++...+                 +|+++-+.++       +.+.+...-+.            
T Consensus       416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~  495 (616)
T COG3211         416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN  495 (616)
T ss_pred             ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence            57899999998777899985432                 3888887765       45555421111            


Q ss_pred             -CcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCC--CCcceEEEccCCCEEE
Q 016318          174 -VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFV  250 (391)
Q Consensus       174 -~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngia~~~d~~~l~  250 (391)
                       ..+..|++|++|+.|+||+.+.++.-..++++..      -..+.+=++++++++.+....  ..-.|++++||++.++
T Consensus       496 ~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G------~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlF  569 (616)
T COG3211         496 ANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRG------VTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLF  569 (616)
T ss_pred             cccccCCCceEECCCCCEEEEecCCCCccCccccc------ccccccCCCccceeeeeccCCCcceeecceeCCCCceEE
Confidence             1256699999999999999975532222211111      114455567777777765443  3667999999999999


Q ss_pred             EEe
Q 016318          251 FCE  253 (391)
Q Consensus       251 v~e  253 (391)
                      |.-
T Consensus       570 V~v  572 (616)
T COG3211         570 VNV  572 (616)
T ss_pred             EEe
Confidence            874

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.50  E-value=0.007  Score=54.92  Aligned_cols=164  Identities=12%  Similarity=0.175  Sum_probs=91.4

Q ss_pred             ccccccCcceEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEee----cCCCcccCCCCCCccccccccCccCccceE
Q 016318           64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFT----SNNRSELCNPKPIATSYLKNEHICGRPLGL  136 (391)
Q Consensus        64 ~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi  136 (391)
                      ....+.-||+|+.-.+|+...+.-.+++++.+.-+   ....+...    ......+                +| =-|+
T Consensus       124 PL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N----------------~G-fEGl  186 (316)
T COG3204         124 PLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKN----------------KG-FEGL  186 (316)
T ss_pred             cccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCC----------------cC-ceee
Confidence            33447789999988777655556667777776433   11111110    0000001                11 1389


Q ss_pred             EEecCCCcEEEEECCC--CeEEEeCCCCeeEEcee--ccCC--CcccCCcceeecC-CCCEEEEeCCCcccchhheeeec
Q 016318          137 RFDKKTGDLYIADAYF--GLMKVGPEGGLATSLAT--EAEG--VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       137 ~~d~~~g~L~V~d~~~--gl~~~d~~~g~~~~~~~--~~~~--~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~  209 (391)
                      ++|+.+++|||+-..+  +|++++-..........  +...  .-..-..++.+++ .|++++-..-             
T Consensus       187 A~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E-------------  253 (316)
T COG3204         187 AWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDE-------------  253 (316)
T ss_pred             ecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecC-------------
Confidence            9999888999997664  57777632211111111  1110  1123345566665 4565554321             


Q ss_pred             ccCCCceEEEEeCCCCeEEEe---------ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          210 SAEDTGRVLKYDPTTKQTTVL---------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~---------~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                          ++.|+..|.+..-...+         ......+-||+.+.+|+ ||+. +..+..+|+.
T Consensus       254 ----Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIv-SEPnlfy~F~  310 (316)
T COG3204         254 ----SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIV-SEPNLFYRFT  310 (316)
T ss_pred             ----CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEE-ecCCcceecc
Confidence                35677777654433322         13345788999999998 8877 4567788876

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.43  E-value=0.096  Score=50.80  Aligned_cols=178  Identities=14%  Similarity=0.125  Sum_probs=96.2

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      --+++|.++|+ ..++..+|.|..|++.  ++..-..                     . ..+-..+++... +|.|.-+
T Consensus       249 Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~---------------------a-H~ggv~~L~~lr-~GtllSG  304 (626)
T KOG2106|consen  249 VLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH---------------------A-HDGGVFSLCMLR-DGTLLSG  304 (626)
T ss_pred             EEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee---------------------e-cCCceEEEEEec-CccEeec
Confidence            34788888998 8899999999999876  2111111                     1 123345566665 6777653


Q ss_pred             ECCCCeEEEeCCCCeeEEcee-ccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          149 DAYFGLMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~-~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      .-.+-|...|-.   .+.+.. +.+ .++..+.-++.... .||+.+++                  +.|+.=..+++-.
T Consensus       305 gKDRki~~Wd~~---y~k~r~~elP-e~~G~iRtv~e~~~-di~vGTtr------------------N~iL~Gt~~~~f~  361 (626)
T KOG2106|consen  305 GKDRKIILWDDN---YRKLRETELP-EQFGPIRTVAEGKG-DILVGTTR------------------NFILQGTLENGFT  361 (626)
T ss_pred             CccceEEecccc---ccccccccCc-hhcCCeeEEecCCC-cEEEeecc------------------ceEEEeeecCCce
Confidence            322336666522   222211 111 12345666665433 49999865                  3455444444433


Q ss_pred             EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC-CceEeCCCCCEEEEEcCCCc
Q 016318          228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP-DNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p-~~i~~d~~G~lwva~~~~~~  302 (391)
                      .+.......-.|++.+|+.+ .+++ ....+-.++|-  +  .+. .+...-+.| ....+++.|.+-+++..++.
T Consensus       362 ~~v~gh~delwgla~hps~~-q~~T-~gqdk~v~lW~--~--~k~-~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w  430 (626)
T KOG2106|consen  362 LTVQGHGDELWGLATHPSKN-QLLT-CGQDKHVRLWN--D--HKL-EWTKIIEDPAECADFHPSGVVAVGTATGRW  430 (626)
T ss_pred             EEEEecccceeeEEcCCChh-heee-ccCcceEEEcc--C--Cce-eEEEEecCceeEeeccCcceEEEeeccceE
Confidence            33333334667999999888 6666 33445555552  1  111 122111112 34667788866677666654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.43  E-value=0.038  Score=57.02  Aligned_cols=155  Identities=15%  Similarity=0.137  Sum_probs=94.6

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      .|=..|++|++|..|+++..||-|.+|+...-.+-..      .+|             .......+++..  .+.+.++
T Consensus        14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~------ti~-------------~~g~~v~~ia~~--s~~f~~~   72 (933)
T KOG1274|consen   14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE------TID-------------ISGELVSSIACY--SNHFLTG   72 (933)
T ss_pred             CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc------hhh-------------ccCceeEEEeec--ccceEEe
Confidence            3667899999999999999999998886541100000      001             011223455554  3456666


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ...+-+.++....++...+...+.    ...++++++.+|+..++.+.                 +-.|-..+..+...+
T Consensus        73 s~~~tv~~y~fps~~~~~iL~Rft----lp~r~~~v~g~g~~iaagsd-----------------D~~vK~~~~~D~s~~  131 (933)
T KOG1274|consen   73 SEQNTVLRYKFPSGEEDTILARFT----LPIRDLAVSGSGKMIAAGSD-----------------DTAVKLLNLDDSSQE  131 (933)
T ss_pred             eccceEEEeeCCCCCccceeeeee----ccceEEEEecCCcEEEeecC-----------------ceeEEEEeccccchh
Confidence            555667777766554443322221    13578899999987666543                 224555555444444


Q ss_pred             EeccCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          229 VLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       229 ~~~~~~~~~-ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ....+...| .++.++|++++|-++ +.++.+..+++..
T Consensus       132 ~~lrgh~apVl~l~~~p~~~fLAvs-s~dG~v~iw~~~~  169 (933)
T KOG1274|consen  132 KVLRGHDAPVLQLSYDPKGNFLAVS-SCDGKVQIWDLQD  169 (933)
T ss_pred             eeecccCCceeeeeEcCCCCEEEEE-ecCceEEEEEccc
Confidence            444444444 489999999977776 5678888888764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.42  E-value=0.047  Score=51.86  Aligned_cols=108  Identities=16%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             CcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE-EeccCC--CCcceEEEccCCCEEEEEeCC
Q 016318          179 TNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT-VLLRNL--QFPNGLSLSKDKSFFVFCEGS  255 (391)
Q Consensus       179 ~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~--~~~ngia~~~d~~~l~v~et~  255 (391)
                      .+++...+.|..+++.+.                 ++....+|..++..- +..+.-  -.-...+++|||. |+.+-+.
T Consensus       306 V~~ls~h~tgeYllsAs~-----------------d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~  367 (506)
T KOG0289|consen  306 VTGLSLHPTGEYLLSASN-----------------DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTP  367 (506)
T ss_pred             ceeeeeccCCcEEEEecC-----------------CceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCC
Confidence            567777788876666543                 344444555555432 222211  1345688999997 7777676


Q ss_pred             CCeEEEEEeccccCccceeecccCC---CCCceEeCCCCCEEEEEcC-CCchhhhhhhc
Q 016318          256 VGRLHKYWLIGEKAGNLEAFAILPG---YPDNVRTNEKGEFWVAIHC-RRSLYSHLMAL  310 (391)
Q Consensus       256 ~~~I~~~~~~g~~~g~~~~~~~~~g---~p~~i~~d~~G~lwva~~~-~~~~~~~~l~~  310 (391)
                      ++.+..++++..     ...+.+||   -...|.++++| +|.++.. ...+..|.|++
T Consensus       368 d~~vkiwdlks~-----~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRK  420 (506)
T KOG0289|consen  368 DGVVKIWDLKSQ-----TNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRK  420 (506)
T ss_pred             CceEEEEEcCCc-----cccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehh
Confidence            666666666542     12333444   34678999888 5655544 33365555554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.41  E-value=0.091  Score=53.31  Aligned_cols=185  Identities=16%  Similarity=0.176  Sum_probs=108.2

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      .--.++++..+.. +..+..++.|..|+.+...-+...                      +|+..++-.|-+ +++..|.
T Consensus       374 ~dVRsl~vS~d~~-~~~Sga~~SikiWn~~t~kciRTi----------------------~~~y~l~~~Fvp-gd~~Iv~  429 (888)
T KOG0306|consen  374 SDVRSLCVSSDSI-LLASGAGESIKIWNRDTLKCIRTI----------------------TCGYILASKFVP-GDRYIVL  429 (888)
T ss_pred             hheeEEEeecCce-eeeecCCCcEEEEEccCcceeEEe----------------------ccccEEEEEecC-CCceEEE
Confidence            3456788886655 555555677888877633333222                      267778888888 5665555


Q ss_pred             ECCCC-eEEEeCCCCe-eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC----
Q 016318          149 DAYFG-LMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP----  222 (391)
Q Consensus       149 d~~~g-l~~~d~~~g~-~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~----  222 (391)
                      ...+| |..+|..... ++.+ ...+|    ....|+..+||.=++|.+.                 +..|-.||-    
T Consensus       430 G~k~Gel~vfdlaS~~l~Eti-~AHdg----aIWsi~~~pD~~g~vT~sa-----------------DktVkfWdf~l~~  487 (888)
T KOG0306|consen  430 GTKNGELQVFDLASASLVETI-RAHDG----AIWSISLSPDNKGFVTGSA-----------------DKTVKFWDFKLVV  487 (888)
T ss_pred             eccCCceEEEEeehhhhhhhh-hcccc----ceeeeeecCCCCceEEecC-----------------CcEEEEEeEEEEe
Confidence            45555 8888766432 2222 12222    3566778888776776643                 122222221    


Q ss_pred             -CCCeE-EEe--c--cCCC---CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC--CC-CceEeCCC
Q 016318          223 -TTKQT-TVL--L--RNLQ---FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG--YP-DNVRTNEK  290 (391)
Q Consensus       223 -~~~~~-~~~--~--~~~~---~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g--~p-~~i~~d~~  290 (391)
                       ..+.. +++  .  ..+.   ..-.+.+|||+++|.|+ --++.+..|-++.     .+.|..+.|  +| -.|.+++|
T Consensus       488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs-LLdnTVkVyflDt-----lKFflsLYGHkLPV~smDIS~D  561 (888)
T KOG0306|consen  488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS-LLDNTVKVYFLDT-----LKFFLSLYGHKLPVLSMDISPD  561 (888)
T ss_pred             ccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE-eccCeEEEEEecc-----eeeeeeecccccceeEEeccCC
Confidence             11111 111  0  1112   34478899999988877 5678899988764     455555554  34 46777888


Q ss_pred             CCEEEEEcCCCchhh
Q 016318          291 GEFWVAIHCRRSLYS  305 (391)
Q Consensus       291 G~lwva~~~~~~~~~  305 (391)
                      +.+.++....+++..
T Consensus       562 SklivTgSADKnVKi  576 (888)
T KOG0306|consen  562 SKLIVTGSADKNVKI  576 (888)
T ss_pred             cCeEEeccCCCceEE
Confidence            888888776666544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.40  E-value=0.0091  Score=57.74  Aligned_cols=220  Identities=14%  Similarity=0.132  Sum_probs=115.9

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      --.++++|+.|-.+++|+.|-.|-.||-.    ....|...-     .|+              +.....+.+++.++.+
T Consensus       169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-----P~E--------------~h~i~sl~ys~Tg~~i  229 (641)
T KOG0772|consen  169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-----PCE--------------THQINSLQYSVTGDQI  229 (641)
T ss_pred             EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC-----ccc--------------ccccceeeecCCCCeE
Confidence            34578899999999999999999988765    222232211     122              4455677888744445


Q ss_pred             EEEECCCCeEEEeCCCCeeEEceeccC--------CCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCce
Q 016318          146 YIADAYFGLMKVGPEGGLATSLATEAE--------GVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       146 ~V~d~~~gl~~~d~~~g~~~~~~~~~~--------~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      +|.....-.-.+|.++-++-.+.....        .......+.....|+. +.++|.+.               .++-|
T Consensus       230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~---------------DgtlR  294 (641)
T KOG0772|consen  230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY---------------DGTLR  294 (641)
T ss_pred             EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC---------------CCcEE
Confidence            555433336667777654433322100        0000111222223322 23333321               22334


Q ss_pred             EEEEeCCCCeEEEeccCC-----CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec---ccCC-CCCceEe
Q 016318          217 VLKYDPTTKQTTVLLRNL-----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA---ILPG-YPDNVRT  287 (391)
Q Consensus       217 l~~~d~~~~~~~~~~~~~-----~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~---~~~g-~p~~i~~  287 (391)
                      ++-.+....+..++....     -.+...++++|++ ++.+....+.|..++. |...-+.....   .++| -..+|.+
T Consensus       295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~F  372 (641)
T KOG0772|consen  295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISF  372 (641)
T ss_pred             EEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeEEEe
Confidence            444444334555554322     1456788999999 4444455566655543 32222222222   2443 3567999


Q ss_pred             CCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccc
Q 016318          288 NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISA  325 (391)
Q Consensus       288 d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~  325 (391)
                      +.+|+++++-.......+|.|+.+..--.....|+.+.
T Consensus       373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~  410 (641)
T KOG0772|consen  373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPF  410 (641)
T ss_pred             ccccchhhhccCCCceeeeeccccccchhhhcCCCccC
Confidence            99999998877666666666666544333333444443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.34  E-value=0.11  Score=46.85  Aligned_cols=73  Identities=16%  Similarity=0.243  Sum_probs=56.1

Q ss_pred             cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCC
Q 016318          177 RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS  255 (391)
Q Consensus       177 ~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~  255 (391)
                      .+.++++..+||++.++.+.                 ++.+..+|..+++.+... ..-..--++++++|.+ -.|+.+.
T Consensus        64 H~v~dv~~s~dg~~alS~sw-----------------D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~-qivSGSr  125 (315)
T KOG0279|consen   64 HFVSDVVLSSDGNFALSASW-----------------DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR-QIVSGSR  125 (315)
T ss_pred             eEecceEEccCCceEEeccc-----------------cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc-eeecCCC
Confidence            47899999999999998754                 577888999987665544 3345667899999998 5567677


Q ss_pred             CCeEEEEEeccc
Q 016318          256 VGRLHKYWLIGE  267 (391)
Q Consensus       256 ~~~I~~~~~~g~  267 (391)
                      ...|..++..|.
T Consensus       126 DkTiklwnt~g~  137 (315)
T KOG0279|consen  126 DKTIKLWNTLGV  137 (315)
T ss_pred             cceeeeeeeccc
Confidence            778888876663

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=97.34  E-value=0.1  Score=46.52  Aligned_cols=189  Identities=16%  Similarity=0.153  Sum_probs=106.6

Q ss_pred             cccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      .+....-.+|+...+|..+-.++.++.+..++-+.. .+...-.+++                 ..+..-.++.++....
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~g-----------------h~~svdql~w~~~~~d   78 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRG-----------------HTDSVDQLCWDPKHPD   78 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccC-----------------CCcchhhheeCCCCCc
Confidence            455667789999999998999999998888866521 1111100000                 0112233455543334


Q ss_pred             E-EEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 L-YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L-~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      + .++.+.+-+..+|...++...-... .+.    -..+.-.|+|+-.+...                 .+.+|..+|..
T Consensus        79 ~~atas~dk~ir~wd~r~~k~~~~i~~-~~e----ni~i~wsp~g~~~~~~~-----------------kdD~it~id~r  136 (313)
T KOG1407|consen   79 LFATASGDKTIRIWDIRSGKCTARIET-KGE----NINITWSPDGEYIAVGN-----------------KDDRITFIDAR  136 (313)
T ss_pred             ceEEecCCceEEEEEeccCcEEEEeec-cCc----ceEEEEcCCCCEEEEec-----------------CcccEEEEEec
Confidence            4 4444446688888776653322111 111    12244456665333321                 24577778876


Q ss_pred             CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCc---eEeCCCCCEEEEEcC
Q 016318          224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN---VRTNEKGEFWVAIHC  299 (391)
Q Consensus       224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~---i~~d~~G~lwva~~~  299 (391)
                      +.+...-.+...+.|-+++..+++ +++.+++.+.|..+...     ..+....+...|.|   |.+|++|+++.....
T Consensus       137 ~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyp-----sLkpv~si~AH~snCicI~f~p~GryfA~GsA  209 (313)
T KOG1407|consen  137 TYKIVNEEQFKFEVNEISWNNSND-LFFLTNGLGCVEILSYP-----SLKPVQSIKAHPSNCICIEFDPDGRYFATGSA  209 (313)
T ss_pred             ccceeehhcccceeeeeeecCCCC-EEEEecCCceEEEEecc-----ccccccccccCCcceEEEEECCCCceEeeccc
Confidence            655544444445788899998888 77776776766655321     23333333344543   778999997754333

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.33  E-value=0.012  Score=59.51  Aligned_cols=187  Identities=15%  Similarity=0.146  Sum_probs=110.3

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccc-eEEEecCCCcEEEEECC
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL-GLRFDKKTGDLYIADAY  151 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~-gi~~d~~~g~L~V~d~~  151 (391)
                      +..+.|+.+.+..++.|+.+.-|..+.+........                     ...|. .+.|.| . ..|++++.
T Consensus       456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G---------------------H~~PVwdV~F~P-~-GyYFatas  512 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG---------------------HLAPVWDVQFAP-R-GYYFATAS  512 (707)
T ss_pred             eeeecccccceeeccCCcceeeeecccceeEEEecC---------------------CCcceeeEEecC-C-ceEEEecC
Confidence            456788999889999999888887774444332221                     12222 344554 2 23333332


Q ss_pred             -CC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          152 -FG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       152 -~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                       .+   ||..|.. .-.+.++.+     +.-.+.+.+.|+.+..+|.++                 +..+-.||..+|..
T Consensus       513 ~D~tArLWs~d~~-~PlRifagh-----lsDV~cv~FHPNs~Y~aTGSs-----------------D~tVRlWDv~~G~~  569 (707)
T KOG0263|consen  513 HDQTARLWSTDHN-KPLRIFAGH-----LSDVDCVSFHPNSNYVATGSS-----------------DRTVRLWDVSTGNS  569 (707)
T ss_pred             CCceeeeeecccC-Cchhhhccc-----ccccceEEECCcccccccCCC-----------------CceEEEEEcCCCcE
Confidence             11   4444331 112222222     234556788999887776654                 34566778777765


Q ss_pred             EEeccCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCchhhh
Q 016318          228 TVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSH  306 (391)
Q Consensus       228 ~~~~~~~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~  306 (391)
                      ..+..+- .....++++|+|++|- +....+.|..+++.+..  ....+....+..+.|.++.+|+++++.....++.+|
T Consensus       570 VRiF~GH~~~V~al~~Sp~Gr~La-Sg~ed~~I~iWDl~~~~--~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lW  646 (707)
T KOG0263|consen  570 VRIFTGHKGPVTALAFSPCGRYLA-SGDEDGLIKIWDLANGS--LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLW  646 (707)
T ss_pred             EEEecCCCCceEEEEEcCCCceEe-ecccCCcEEEEEcCCCc--chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEE
Confidence            4444443 3446899999999654 33456677777765421  111222224567789999999999998887777665


Q ss_pred             hh
Q 016318          307 LM  308 (391)
Q Consensus       307 ~l  308 (391)
                      .+
T Consensus       647 D~  648 (707)
T KOG0263|consen  647 DL  648 (707)
T ss_pred             Ec
Confidence            33

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.32  E-value=0.011  Score=60.31  Aligned_cols=186  Identities=12%  Similarity=0.135  Sum_probs=110.0

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ...+++++.=||..++|...|.|-+++.+ +...-..+                  ......+...|+++|. -+++.|+
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~------------------~~~ah~~~V~gla~D~-~n~~~vs  510 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG------------------DSPAHKGEVTGLAVDG-TNRLLVS  510 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc------------------cCccccCceeEEEecC-CCceEEE
Confidence            45688899899989999999999999987 32221111                  0011234467999997 7888888


Q ss_pred             ECCCCeEEE-eCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          149 DAYFGLMKV-GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       149 d~~~gl~~~-d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ....|++++ |..+.....-.+.  +   ..+..+.-.....+.+..                 ..+-.|..||..|.++
T Consensus       511 a~~~Gilkfw~f~~k~l~~~l~l--~---~~~~~iv~hr~s~l~a~~-----------------~ddf~I~vvD~~t~kv  568 (910)
T KOG1539|consen  511 AGADGILKFWDFKKKVLKKSLRL--G---SSITGIVYHRVSDLLAIA-----------------LDDFSIRVVDVVTRKV  568 (910)
T ss_pred             ccCcceEEEEecCCcceeeeecc--C---CCcceeeeeehhhhhhhh-----------------cCceeEEEEEchhhhh
Confidence            878886665 4443321110000  0   112222222221111111                 1123678888766554


Q ss_pred             -EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318          228 -TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       228 -~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                       +.+......-|.+++||||+||..+ .....|..+++...  .....+. ++.-+.++.++++|.+..+.+..
T Consensus       569 vR~f~gh~nritd~~FS~DgrWlisa-smD~tIr~wDlpt~--~lID~~~-vd~~~~sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  569 VREFWGHGNRITDMTFSPDGRWLISA-SMDSTIRTWDLPTG--TLIDGLL-VDSPCTSLSFSPNGDFLATVHVD  638 (910)
T ss_pred             hHHhhccccceeeeEeCCCCcEEEEe-ecCCcEEEEeccCc--ceeeeEe-cCCcceeeEECCCCCEEEEEEec
Confidence             2233334577899999999988776 45678888886432  2222222 22335678899999888776654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.31  E-value=0.052  Score=52.58  Aligned_cols=182  Identities=14%  Similarity=0.052  Sum_probs=108.9

Q ss_pred             cccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      ++-.|..|+.. .+. +|+|+..+.|++=+-. .+......                      ....-+|++.++ ..++
T Consensus       328 ~~G~iRtv~e~-~~d-i~vGTtrN~iL~Gt~~~~f~~~v~g----------------------h~delwgla~hp-s~~q  382 (626)
T KOG2106|consen  328 QFGPIRTVAEG-KGD-ILVGTTRNFILQGTLENGFTLTVQG----------------------HGDELWGLATHP-SKNQ  382 (626)
T ss_pred             hcCCeeEEecC-CCc-EEEeeccceEEEeeecCCceEEEEe----------------------cccceeeEEcCC-Chhh
Confidence            34455666654 555 9999998888876544 33322211                      122356889988 5677


Q ss_pred             EEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          146 YIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       146 ~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      |+.... +.+...+ + .+.+ .....+    .....+++++.|.+-+...                  +|+.+.+|.++
T Consensus       383 ~~T~gqdk~v~lW~-~-~k~~-wt~~~~----d~~~~~~fhpsg~va~Gt~------------------~G~w~V~d~e~  437 (626)
T KOG2106|consen  383 LLTCGQDKHVRLWN-D-HKLE-WTKIIE----DPAECADFHPSGVVAVGTA------------------TGRWFVLDTET  437 (626)
T ss_pred             eeeccCcceEEEcc-C-Ccee-EEEEec----CceeEeeccCcceEEEeec------------------cceEEEEeccc
Confidence            766554 3455555 2 2211 111111    1245678899996655553                  48999999998


Q ss_pred             CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC-CCCceEeCCCCCEEEEEcCC
Q 016318          225 KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-YPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       225 ~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g-~p~~i~~d~~G~lwva~~~~  300 (391)
                      ..+..+...-..-+-+.++|||.++-|+ +.++.|+.|.++.+... ......-.| ....+..+.|+++.++....
T Consensus       438 ~~lv~~~~d~~~ls~v~ysp~G~~lAvg-s~d~~iyiy~Vs~~g~~-y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  438 QDLVTIHTDNEQLSVVRYSPDGAFLAVG-SHDNHIYIYRVSANGRK-YSRVGKCSGSPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             ceeEEEEecCCceEEEEEcCCCCEEEEe-cCCCeEEEEEECCCCcE-EEEeeeecCceeEEeeecCCCceEEeccCc
Confidence            7776665554455788999999988887 66788988887643211 111111112 22345566777777765443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.004  Score=53.62  Aligned_cols=102  Identities=22%  Similarity=0.341  Sum_probs=67.5

Q ss_pred             CccceEEEecCCCcEEEEECCCCeEEEeCCCC-eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g-~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~  209 (391)
                      |.-.|++.|  +.+||.+|...-|..-||++= ....+.-..+|.+....|.+.-- +|.+|.--..             
T Consensus       131 GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~-------------  194 (262)
T COG3823         131 GEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ-------------  194 (262)
T ss_pred             CcceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeee-------------
Confidence            444677776  567999886666888888752 22223233566666667766432 5666554422             


Q ss_pred             ccCCCceEEEEeCCCCeEEEecc--C-----------CCCcceEEEccCCCEEEEE
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLLR--N-----------LQFPNGLSLSKDKSFFVFC  252 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~~--~-----------~~~~ngia~~~d~~~l~v~  252 (391)
                          +.++.+.+|++|++....+  +           ..-+||||..|+++.+|++
T Consensus       195 ----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT  246 (262)
T COG3823         195 ----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT  246 (262)
T ss_pred             ----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence                2489999999998876542  1           2257999999999878886

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.25  E-value=0.031  Score=52.86  Aligned_cols=181  Identities=18%  Similarity=0.192  Sum_probs=104.9

Q ss_pred             CcceEEEccC--CCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           70 GPESMAFDPL--GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        70 gPe~i~~d~~--G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      .-.++.+.|.  +.-+.+++.||.+.-|+.++-+.+.                    ..+....|...++|+| +|+.+.
T Consensus       219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--------------------~l~gH~~RVs~VafHP-sG~~L~  277 (459)
T KOG0272|consen  219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--------------------DLEGHLARVSRVAFHP-SGKFLG  277 (459)
T ss_pred             ceeeEEEccCCCccceeeeccCCceeeeccCCCcchh--------------------hhhcchhhheeeeecC-CCceee
Confidence            3345566654  4448899999987777554222221                    2333456777889999 677666


Q ss_pred             EECCCCeE-EEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          148 ADAYFGLM-KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       148 ~d~~~gl~-~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      ...+..-+ .+|..+++ +.+..  +| ......++++.+||.+..|...               ...||  .+|..+|.
T Consensus       278 TasfD~tWRlWD~~tk~-ElL~Q--EG-Hs~~v~~iaf~~DGSL~~tGGl---------------D~~~R--vWDlRtgr  336 (459)
T KOG0272|consen  278 TASFDSTWRLWDLETKS-ELLLQ--EG-HSKGVFSIAFQPDGSLAATGGL---------------DSLGR--VWDLRTGR  336 (459)
T ss_pred             ecccccchhhcccccch-hhHhh--cc-cccccceeEecCCCceeeccCc---------------cchhh--eeecccCc
Confidence            55554322 23555442 22211  12 2346789999999999777532               22344  46777777


Q ss_pred             EEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC---CCCceEeCC-CCCEEEEEc
Q 016318          227 TTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG---YPDNVRTNE-KGEFWVAIH  298 (391)
Q Consensus       227 ~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g---~p~~i~~d~-~G~lwva~~  298 (391)
                      ...+.++ .....+|+++|+|. .+.+-+..+.+.++++...    .+ ....|+   ....++.++ .|.+.++..
T Consensus       337 ~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r----~~-ly~ipAH~nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  337 CIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMR----SE-LYTIPAHSNLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             EEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeeccc----cc-ceecccccchhhheEecccCCeEEEEcc
Confidence            6665544 45667999999997 4444455555555555432    12 222333   445678887 454555433

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.22  E-value=0.21  Score=47.71  Aligned_cols=168  Identities=13%  Similarity=0.129  Sum_probs=85.8

Q ss_pred             EccCCCeeEEEec-C--CEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           76 FDPLGRGPYTGVA-D--GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        76 ~d~~G~~ly~~~~-~--g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      +.++|+.+.+.+. +  .+++.++..  ..+.+....                      .....|..+++++..+|....
T Consensus        43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~----------------------g~~~~g~~~s~~~~~~~Yv~~  100 (386)
T PF14583_consen   43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP----------------------GDNTFGGFLSPDDRALYYVKN  100 (386)
T ss_dssp             B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-----------------------B-TTT-EE-TTSSEEEEEET
T ss_pred             cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC----------------------CCCccceEEecCCCeEEEEEC
Confidence            4567865544433 3  577777776  344333211                      111235566664556644444


Q ss_pred             CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCc--c---cchhheeeecccCCCceEEEEeCCCC
Q 016318          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTN--Y---QRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~--~---~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      .+.|.++|.+|.+.+.+....++-.  .--..+.+.|+..++.....+  +   .....+.+.++..+..+|++.|.++|
T Consensus       101 ~~~l~~vdL~T~e~~~vy~~p~~~~--g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG  178 (386)
T PF14583_consen  101 GRSLRRVDLDTLEERVVYEVPDDWK--GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG  178 (386)
T ss_dssp             TTEEEEEETTT--EEEEEE--TTEE--EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred             CCeEEEEECCcCcEEEEEECCcccc--cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence            5679999999988776655433211  011223456777776642211  1   11234667888899999999999999


Q ss_pred             eEEEeccCCCCcceEEEccC-CCEEEEEeCC-----CCeEEEEEeccc
Q 016318          226 QTTVLLRNLQFPNGLSLSKD-KSFFVFCEGS-----VGRLHKYWLIGE  267 (391)
Q Consensus       226 ~~~~~~~~~~~~ngia~~~d-~~~l~v~et~-----~~~I~~~~~~g~  267 (391)
                      +.+++.+.-.--+-+.++|. ...|-+|--+     ..|||.++.+|.
T Consensus       179 ~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  179 ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             -EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence            99998766555566777763 3333343221     358888887764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.19  E-value=0.45  Score=50.92  Aligned_cols=188  Identities=11%  Similarity=0.086  Sum_probs=103.2

Q ss_pred             ceEEEcc-CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           72 ESMAFDP-LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        72 e~i~~d~-~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      .++++.+ +++.+.++..||.|..|+......+....                    ...+...++++++.++.++++..
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~--------------------~H~~~V~~l~~~p~~~~~L~Sgs  595 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK--------------------EHEKRVWSIDYSSADPTLLASGS  595 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec--------------------CCCCCEEEEEEcCCCCCEEEEEc
Confidence            4566665 36678889999999999876322222111                    11244678889863566655544


Q ss_pred             CCC-eEEEeCCCCeeEEceeccCCCcccCCcceeec-CCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE-
Q 016318          151 YFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT-  227 (391)
Q Consensus       151 ~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d-~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-  227 (391)
                      ..| |..+|..++........     ......+.+. ++|++.++.+.                 +|.+..||..+.+. 
T Consensus       596 ~Dg~v~iWd~~~~~~~~~~~~-----~~~v~~v~~~~~~g~~latgs~-----------------dg~I~iwD~~~~~~~  653 (793)
T PLN00181        596 DDGSVKLWSINQGVSIGTIKT-----KANICCVQFPSESGRSLAFGSA-----------------DHKVYYYDLRNPKLP  653 (793)
T ss_pred             CCCEEEEEECCCCcEEEEEec-----CCCeEEEEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCCcc
Confidence            444 77888876543211111     0124455553 46776666543                 57899999876542 


Q ss_pred             -EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC----ccceeecccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          228 -TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA----GNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       228 -~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~----g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                       ..+.......+.+++. +++.++ +-+..+.|..+++.....    .....+.........+.++++|.+.++....+.
T Consensus       654 ~~~~~~h~~~V~~v~f~-~~~~lv-s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~  731 (793)
T PLN00181        654 LCTMIGHSKTVSYVRFV-DSSTLV-SSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE  731 (793)
T ss_pred             ceEecCCCCCEEEEEEe-CCCEEE-EEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence             2222222344567776 666454 445566777776542111    111222222223456788888886665554444


Q ss_pred             h
Q 016318          303 L  303 (391)
Q Consensus       303 ~  303 (391)
                      +
T Consensus       732 v  732 (793)
T PLN00181        732 V  732 (793)
T ss_pred             E
Confidence            3

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.15  E-value=0.14  Score=51.39  Aligned_cols=157  Identities=14%  Similarity=0.136  Sum_probs=92.9

Q ss_pred             eEEEccCCCeeEEEe-cCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCc-cceEEEecCCCcEEEEE
Q 016318           73 SMAFDPLGRGPYTGV-ADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR-PLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~-~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-P~gi~~d~~~g~L~V~d  149 (391)
                      +-++.|+|+.|-.++ .+=+|+++.++ ..+.....                   ..+...+ ...+.|..+++.++++.
T Consensus       387 ~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~-------------------~~~~~~~~a~~i~ftid~~k~~~~s  447 (691)
T KOG2048|consen  387 CAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVD-------------------DVPLALLDASAISFTIDKNKLFLVS  447 (691)
T ss_pred             eeccCCCCCEEEEeeccceEEEEeccCcceeEEEec-------------------cchhhhccceeeEEEecCceEEEEe
Confidence            446779999665544 56789999876 22222110                   0001111 12344444234444443


Q ss_pred             -CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          150 -AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       150 -~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                       ....+..++.++...+.+........-...+.|++.++|+...+-++                 .|.+++|+.++++.+
T Consensus       448 ~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t-----------------~g~I~v~nl~~~~~~  510 (691)
T KOG2048|consen  448 KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST-----------------RGQIFVYNLETLESH  510 (691)
T ss_pred             cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec-----------------cceEEEEEcccceee
Confidence             23447778777766555533222222345678899999975444322                 478999999999988


Q ss_pred             EeccCCC-CcceEEEcc-CCCEEEEEeCCCCeEEEEEecc
Q 016318          229 VLLRNLQ-FPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       229 ~~~~~~~-~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .+...+. +-...+++| +.+.|.++ +.+++++-|++..
T Consensus       511 ~l~~rln~~vTa~~~~~~~~~~lvva-ts~nQv~efdi~~  549 (691)
T KOG2048|consen  511 LLKVRLNIDVTAAAFSPFVRNRLVVA-TSNNQVFEFDIEA  549 (691)
T ss_pred             cchhccCcceeeeeccccccCcEEEE-ecCCeEEEEecch
Confidence            8764444 334556664 44557776 6788999999843

>PTZ00420 coronin; Provisional

Probab=97.14  E-value=0.23  Score=50.58  Aligned_cols=162  Identities=10%  Similarity=0.012  Sum_probs=91.2

Q ss_pred             cCcceEEEccC-CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           69 QGPESMAFDPL-GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        69 ~gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ....++++.++ ++.+.+++.||.|..|+.. .........   ...|          ...........+++++++..++
T Consensus        75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~---~p~~----------~L~gH~~~V~sVaf~P~g~~iL  141 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK---DPQC----------ILKGHKKKISIIDWNPMNYYIM  141 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc---cceE----------EeecCCCcEEEEEECCCCCeEE
Confidence            34568889886 7888999999999999764 110000000   0000          0111234567889998333344


Q ss_pred             EEEC-CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          147 IADA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       147 V~d~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      ++.. .+.|..+|..+++...-.. ..    ..+..++++++|++.++.+.                 ++.+..||+.++
T Consensus       142 aSgS~DgtIrIWDl~tg~~~~~i~-~~----~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg  199 (568)
T PTZ00420        142 CSSGFDSFVNIWDIENEKRAFQIN-MP----KKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQ  199 (568)
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEe-cC----CcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCC
Confidence            4333 3448888988775332111 11    24678899999998877643                 467889999887


Q ss_pred             eEEEeccCCCCc---ce---EEEccCCCEEEEEeCCC---CeEEEEEec
Q 016318          226 QTTVLLRNLQFP---NG---LSLSKDKSFFVFCEGSV---GRLHKYWLI  265 (391)
Q Consensus       226 ~~~~~~~~~~~~---ng---ia~~~d~~~l~v~et~~---~~I~~~~~~  265 (391)
                      +...-...-...   ..   ..++++++++..+...+   +.|..+++.
T Consensus       200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence            654322221111   11   12357887555543332   246666655

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.12  E-value=0.092  Score=53.61  Aligned_cols=112  Identities=14%  Similarity=0.068  Sum_probs=72.1

Q ss_pred             CccceEEEecCCCcEEEEECCCCeEEEeCCCCe-eEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeee
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~-~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      +..+.|.+++ ++-|+=+...+-+-.+.+.... +..+. +     ..+...+++.| |.+.+++.+-            
T Consensus       370 ~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-H-----ndfVTcVaFnPvDDryFiSGSL------------  430 (712)
T KOG0283|consen  370 ADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-H-----NDFVTCVAFNPVDDRYFISGSL------------  430 (712)
T ss_pred             hhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-c-----CCeeEEEEecccCCCcEeeccc------------
Confidence            4466777765 4555555444544334433222 22221 1     24788899998 5566666543            


Q ss_pred             cccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~  267 (391)
                           +|++-.|+....++-.+.+.-.....+++.|||+..+|. +.++.+..|+..|.
T Consensus       431 -----D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIG-t~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  431 -----DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIG-TFNGYCRFYDTEGL  483 (712)
T ss_pred             -----ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEE-EeccEEEEEEccCC
Confidence                 577777887777776655554567889999999977776 77788888877664

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.08  E-value=0.043  Score=54.23  Aligned_cols=125  Identities=14%  Similarity=0.243  Sum_probs=79.1

Q ss_pred             CcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC-------eEEEecc--------C----
Q 016318          174 VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK-------QTTVLLR--------N----  233 (391)
Q Consensus       174 ~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-------~~~~~~~--------~----  233 (391)
                      .++..|.++++.+ .|.+|++.+...-. .+-.-..=+.+..|+|++|-+.++       +...+..        .    
T Consensus       414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r-~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~  492 (616)
T COG3211         414 TPMDRPEWIAVNPGTGEVYFTLTNNGKR-SDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA  492 (616)
T ss_pred             ccccCccceeecCCcceEEEEeCCCCcc-ccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence            4567899999988 57899997543311 000000001233578999988776       4444431        1    


Q ss_pred             ------CCCcceEEEccCCCEEEEEeCCCC--------eEEEEEeccccCccceeecccCC--CCCceEeCCCCC-EEEE
Q 016318          234 ------LQFPNGLSLSKDKSFFVFCEGSVG--------RLHKYWLIGEKAGNLEAFAILPG--YPDNVRTNEKGE-FWVA  296 (391)
Q Consensus       234 ------~~~~ngia~~~d~~~l~v~et~~~--------~I~~~~~~g~~~g~~~~~~~~~g--~p~~i~~d~~G~-lwva  296 (391)
                            +..|.++++++.|+ ||+++....        .++.+...+++.++.+.|..-|.  .-.++++++||+ ++|+
T Consensus       493 ~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~  571 (616)
T COG3211         493 NINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN  571 (616)
T ss_pred             CcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence                  23488999999999 888866443        23433334566777777765442  456789999987 9998


Q ss_pred             EcCC
Q 016318          297 IHCR  300 (391)
Q Consensus       297 ~~~~  300 (391)
                      ....
T Consensus       572 vQHP  575 (616)
T COG3211         572 VQHP  575 (616)
T ss_pred             ecCC
Confidence            7654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=97.07  E-value=0.24  Score=45.51  Aligned_cols=160  Identities=13%  Similarity=0.141  Sum_probs=82.1

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .-.+++|.+||+.+.+...|+.|..|+.+.+..-.+       -|-         ...-..+.|.-++|.++-..+.|+-
T Consensus        88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH-------r~~---------R~nve~dhpT~V~FapDc~s~vv~~  151 (420)
T KOG2096|consen   88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH-------RCI---------RQNVEYDHPTRVVFAPDCKSVVVSV  151 (420)
T ss_pred             ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh-------hHh---------hccccCCCceEEEECCCcceEEEEE
Confidence            456899999999888888999888887652211000       010         0111245788899988444455544


Q ss_pred             CC-CCeEEE--eCCC-CeeEEceeccCCCcc---cC--CcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          150 AY-FGLMKV--GPEG-GLATSLATEAEGVPL---RF--TNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       150 ~~-~gl~~~--d~~~-g~~~~~~~~~~~~~~---~~--~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      .. +.|+++  +.++ |.........+...+   ..  .-++-+. ++..|+.+.+                -+..++.|
T Consensus       152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas----------------~dt~i~lw  214 (420)
T KOG2096|consen  152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSAS----------------LDTKICLW  214 (420)
T ss_pred             ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEec----------------CCCcEEEE
Confidence            32 225444  3221 221111111111000   01  1112222 4455555433                13468888


Q ss_pred             eCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          221 DPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       221 d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                      +.++.-+..+........-.+++|+|+|+.++. ...-+.++.
T Consensus       215 ~lkGq~L~~idtnq~~n~~aavSP~GRFia~~g-FTpDVkVwE  256 (420)
T KOG2096|consen  215 DLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSG-FTPDVKVWE  256 (420)
T ss_pred             ecCCceeeeeccccccccceeeCCCCcEEEEec-CCCCceEEE
Confidence            887443444433333344568999999887774 344444443

>PTZ00421 coronin; Provisional

Probab=97.06  E-value=0.14  Score=51.49  Aligned_cols=160  Identities=11%  Similarity=0.108  Sum_probs=90.2

Q ss_pred             CcceEEEccCC-CeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           70 GPESMAFDPLG-RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G-~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ...++++.+++ +++.+++.|+.|..||...........                    .......++++++ +++++++
T Consensus       127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~--------------------~h~~~V~sla~sp-dG~lLat  185 (493)
T PTZ00421        127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK--------------------CHSDQITSLEWNL-DGSLLCT  185 (493)
T ss_pred             cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc--------------------CCCCceEEEEEEC-CCCEEEE
Confidence            34578898875 678889999999999876222211110                    0123456889998 6776665


Q ss_pred             ECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          149 DAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       149 d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ....+ |..+|+.+++...-.....+.   ....+...+++...++...+             ...++.+..||..+.+.
T Consensus       186 gs~Dg~IrIwD~rsg~~v~tl~~H~~~---~~~~~~w~~~~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        186 TSKDKKLNIIDPRDGTIVSSVEAHASA---KSQRCLWAKRKDLIITLGCS-------------KSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             ecCCCEEEEEECCCCcEEEEEecCCCC---cceEEEEcCCCCeEEEEecC-------------CCCCCeEEEEeCCCCCC
Confidence            55544 888898877532211111111   12234445555555553210             11246788888764331


Q ss_pred             --EEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          228 --TVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       228 --~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                        .... +......-..+++|++.++++....+.|..|++..
T Consensus       250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence              1111 11112223467899998887754567788887764

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.06  E-value=0.18  Score=51.20  Aligned_cols=105  Identities=10%  Similarity=0.028  Sum_probs=64.0

Q ss_pred             cCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE---------EEe---ccCCCCcceEEEc
Q 016318          177 RFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT---------TVL---LRNLQFPNGLSLS  243 (391)
Q Consensus       177 ~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~---------~~~---~~~~~~~ngia~~  243 (391)
                      +.|.+++++|||. +|++.-.                 ++.+-.+|.++.+.         .++   .+-...|-..+++
T Consensus       321 KsPHGV~vSPDGkylyVankl-----------------S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFD  383 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKL-----------------SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFD  383 (635)
T ss_pred             CCccceEECCCCCEEEEeCCC-----------------CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEEC
Confidence            5799999999996 5555421                 35666676654321         011   1223478889999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEeccc---cCcc--ceeecccC--CCCCce------EeCCCCCEEEEEcC
Q 016318          244 KDKSFFVFCEGSVGRLHKYWLIGE---KAGN--LEAFAILP--GYPDNV------RTNEKGEFWVAIHC  299 (391)
Q Consensus       244 ~d~~~l~v~et~~~~I~~~~~~g~---~~g~--~~~~~~~~--g~p~~i------~~d~~G~lwva~~~  299 (391)
                      ++|+ .|.+---...|.+++++..   ..|.  ..+...++  -.|.-+      ..+++|.++++++.
T Consensus       384 g~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        384 GRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             CCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            9998 8888767789999987642   0111  11222111  123333      44899998888765

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.05  E-value=0.38  Score=47.49  Aligned_cols=138  Identities=12%  Similarity=0.043  Sum_probs=73.2

Q ss_pred             EEecCCCc---EEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecc
Q 016318          137 RFDKKTGD---LYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       137 ~~d~~~g~---L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~  210 (391)
                      ++++++..   +|+....  ..|+.++.++|+.+.+.. ..+.    ....+..||| .|.++....             
T Consensus       191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~----~~~p~wSPDG~~Laf~s~~~-------------  252 (428)
T PRK01029        191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGN----QLMPTFSPRKKLLAFISDRY-------------  252 (428)
T ss_pred             eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCC----ccceEECCCCCEEEEEECCC-------------
Confidence            67774333   2454433  239999999988776643 2221    1235788999 566554221             


Q ss_pred             cCCCceEEEEeCCC---CeEEEeccC-CCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCc
Q 016318          211 AEDTGRVLKYDPTT---KQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDN  284 (391)
Q Consensus       211 ~~~~g~l~~~d~~~---~~~~~~~~~-~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~  284 (391)
                      +..+..+..++.++   ++.+.+... .......+++|||+.|+++...  ..+|+++++++.. +..+.+....+....
T Consensus       253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~~~~~~  331 (428)
T PRK01029        253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKYRNSSC  331 (428)
T ss_pred             CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCCCCccc
Confidence            01111222245433   344444432 2233457899999977766432  3478888775321 222223222233345


Q ss_pred             eEeCCCCCE
Q 016318          285 VRTNEKGEF  293 (391)
Q Consensus       285 i~~d~~G~l  293 (391)
                      ...+++|+.
T Consensus       332 p~wSPDG~~  340 (428)
T PRK01029        332 PAWSPDGKK  340 (428)
T ss_pred             eeECCCCCE
Confidence            678888883

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.05  E-value=0.14  Score=44.67  Aligned_cols=114  Identities=11%  Similarity=0.119  Sum_probs=71.0

Q ss_pred             CccceEEEecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318          131 GRPLGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      +....++++|++.++.|....  ..+..+|.++..+..+..       ...|.|..+|+|++.+....            
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~-------~~~n~i~wsP~G~~l~~~g~------------  120 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT-------QPRNTISWSPDGRFLVLAGF------------  120 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC-------CCceEEEECCCCCEEEEEEc------------
Confidence            346788999954555555332  347777877544443321       24578999999987766421            


Q ss_pred             cccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC-----CCeEEEEEecc
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS-----VGRLHKYWLIG  266 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~-----~~~I~~~~~~g  266 (391)
                        +.-.|.|..||.++.+.....+ ......++++|||+++..+.+.     .+.+..++..|
T Consensus       121 --~n~~G~l~~wd~~~~~~i~~~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  121 --GNLNGDLEFWDVRKKKKISTFE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             --cCCCcEEEEEECCCCEEeeccc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence              1224778899988655433222 2346789999999988877653     23444444445

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.04  E-value=0.044  Score=51.97  Aligned_cols=158  Identities=16%  Similarity=0.169  Sum_probs=83.1

Q ss_pred             CccceEEEecCCCcEEEEECCCC------eEEEeCCC-----CeeEEce----eccCCCcc----cCCcceeecCCCCEE
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFG------LMKVGPEG-----GLATSLA----TEAEGVPL----RFTNDLDIDDEGNVY  191 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~g------l~~~d~~~-----g~~~~~~----~~~~~~~~----~~~~~l~~d~~G~ly  191 (391)
                      |--.||.++++++++|+..-...      ++.++...     +.++...    ...+|.++    .-+.+|++.++|.+|
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            33468899854666665543333      55554432     1122111    11123322    256689998899999


Q ss_pred             EEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe--ccCC---------C----CcceEEEccCCCEEEEEeCCC
Q 016318          192 FTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL--LRNL---------Q----FPNGLSLSKDKSFFVFCEGSV  256 (391)
Q Consensus       192 ~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~--~~~~---------~----~~ngia~~~d~~~l~v~et~~  256 (391)
                      +++....           ......+|++|+.+....+.+  ...+         .    ..-++++++||+.||++....
T Consensus       100 is~E~~~-----------~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~  168 (326)
T PF13449_consen  100 ISSEGGR-----------TGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP  168 (326)
T ss_pred             EEeCCcc-----------CCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc
Confidence            9986520           001125789999873332332  1111         1    123899999999777763322


Q ss_pred             ---------------CeEEEEEeccccCccceeecccC--------CCCCceEeCCCCCEEEEEcC
Q 016318          257 ---------------GRLHKYWLIGEKAGNLEAFAILP--------GYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       257 ---------------~~I~~~~~~g~~~g~~~~~~~~~--------g~p~~i~~d~~G~lwva~~~  299 (391)
                                     .||++|+.+.+.....+....+.        ..+..|..-++|+++|-...
T Consensus       169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~  234 (326)
T PF13449_consen  169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD  234 (326)
T ss_pred             ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence                           36777775532111112111221        12344666678888886544

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.034  Score=53.47  Aligned_cols=49  Identities=18%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             eEEEEeCCCC-e--EEEecc--CCCCcceEEEccCCCEEEEEeCC-CCeEEEEEec
Q 016318          216 RVLKYDPTTK-Q--TTVLLR--NLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLI  265 (391)
Q Consensus       216 ~l~~~d~~~~-~--~~~~~~--~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~  265 (391)
                      .+.+.+++.+ +  .+....  ....|.+|++.+||. |++++.. +++|||+..+
T Consensus       343 ~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGa-llv~~D~~~g~i~Rv~~~  397 (399)
T COG2133         343 PVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGA-LLVLTDQGDGRILRVSYA  397 (399)
T ss_pred             eEEEeccCCCcceEEEEEEecCCCCcccceEECCCCe-EEEeecCCCCeEEEecCC
Confidence            4666666554 1  111121  225889999999998 7777766 5699998643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.98  E-value=0.25  Score=44.23  Aligned_cols=73  Identities=19%  Similarity=0.113  Sum_probs=49.3

Q ss_pred             EEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC
Q 016318           75 AFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG  153 (391)
Q Consensus        75 ~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g  153 (391)
                      ..|.++.++|.+++|+..+.+|+. .--.+.       ..|.+.              --.+-++++.++.||++.....
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVyk-------skcgG~--------------~f~sP~i~~g~~sly~a~t~G~  158 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYK-------SKCGGG--------------TFVSPVIAPGDGSLYAAITAGA  158 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEe-------cccCCc--------------eeccceecCCCceEEEEeccce
Confidence            467788899999999999999987 222221       123321              1112245544688999988777


Q ss_pred             eEEEeCCCCeeEEce
Q 016318          154 LMKVGPEGGLATSLA  168 (391)
Q Consensus       154 l~~~d~~~g~~~~~~  168 (391)
                      ++++++++...+.+.
T Consensus       159 vlavt~~~~~~~~~w  173 (354)
T KOG4649|consen  159 VLAVTKNPYSSTEFW  173 (354)
T ss_pred             EEEEccCCCCcceeh
Confidence            999999887666654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.97  E-value=0.11  Score=50.67  Aligned_cols=201  Identities=12%  Similarity=0.118  Sum_probs=110.5

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCcc---ceEEEec
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP---LGLRFDK  140 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P---~gi~~d~  140 (391)
                      -+-+.-.++.+.+.|+.|.+-+.......+|.+  .+.++.+....   +.          .+.++.|..   .+-+++|
T Consensus       212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQY---I~----------Dm~nTKGHia~lt~g~whP  278 (641)
T KOG0772|consen  212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQY---IR----------DMYNTKGHIAELTCGCWHP  278 (641)
T ss_pred             ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchh---hh----------hhhccCCceeeeecccccc
Confidence            334555677888888867766666666666666  44444322110   00          111112221   2225566


Q ss_pred             CCCcEEEEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceE
Q 016318          141 KTGDLYIADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRV  217 (391)
Q Consensus       141 ~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l  217 (391)
                      +..+.++..++.|   ||-++....+.+++.....+..-..+...+.+++|+++.+.                 ..+|.|
T Consensus       279 ~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAag-----------------c~DGSI  341 (641)
T KOG0772|consen  279 DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAG-----------------CLDGSI  341 (641)
T ss_pred             CcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhc-----------------ccCCce
Confidence            5556666666665   44444333445555444444333456667889999884443                 236788


Q ss_pred             EEEeCCCCeEEEe--c----cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC-CC-CceEeCC
Q 016318          218 LKYDPTTKQTTVL--L----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-YP-DNVRTNE  289 (391)
Q Consensus       218 ~~~d~~~~~~~~~--~----~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g-~p-~~i~~d~  289 (391)
                      ..|+..+......  .    ........|+|++||+. +.+-...+.+..+++...+ .-..++.+++. +| .+.++++
T Consensus       342 Q~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSP  419 (641)
T KOG0772|consen  342 QIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSP  419 (641)
T ss_pred             eeeecCCcccccceEeeeccCCCCceeEEEeccccch-hhhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCC
Confidence            8887533222221  1    22335678999999994 4554555666666665432 22334444443 33 4678899


Q ss_pred             CCCEEEEEc
Q 016318          290 KGEFWVAIH  298 (391)
Q Consensus       290 ~G~lwva~~  298 (391)
                      +..+.++..
T Consensus       420 d~kli~TGt  428 (641)
T KOG0772|consen  420 DDKLILTGT  428 (641)
T ss_pred             CceEEEecc
Confidence            988777643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=96.96  E-value=0.039  Score=57.79  Aligned_cols=197  Identities=18%  Similarity=0.188  Sum_probs=104.7

Q ss_pred             eEEEccCCCeeEEEe--cCCEEEEEeCCcee-EEEeecCC-CcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           73 SMAFDPLGRGPYTGV--ADGRILFWDGLKWT-DFAFTSNN-RSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~--~~g~I~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      +|.+.++|..+-+|.  .|++++.|+.+.+. .......+ ....|.          +....+...+++|++++..|+.|
T Consensus        18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~----------m~~h~~sv~CVR~S~dG~~lAsG   87 (942)
T KOG0973|consen   18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCT----------MDDHDGSVNCVRFSPDGSYLASG   87 (942)
T ss_pred             EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhhee----------eccccCceeEEEECCCCCeEeec
Confidence            677888888666666  66777777554111 00000000 011332          22235667788999844456666


Q ss_pred             ECCCCeEEEeCCC-CeeEEcee--------------ccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCC
Q 016318          149 DAYFGLMKVGPEG-GLATSLAT--------------EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       149 d~~~gl~~~d~~~-g~~~~~~~--------------~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      ...+-|+.....+ +.-..+..              ...+ .-.-.-+++-++++.+.++-+-                 
T Consensus        88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~-----------------  149 (942)
T KOG0973|consen   88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSL-----------------  149 (942)
T ss_pred             cCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecc-----------------
Confidence            4443333333321 11011110              0011 1123455667888888777643                 


Q ss_pred             CceEEEEeCCCCeE-EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc---cCccceeecccCCCC--CceEe
Q 016318          214 TGRVLKYDPTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE---KAGNLEAFAILPGYP--DNVRT  287 (391)
Q Consensus       214 ~g~l~~~d~~~~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~---~~g~~~~~~~~~g~p--~~i~~  287 (391)
                      ++.|+.||..+-+. +++......+-|+.+||-|++  +|.....|..++|...+   .+.-.+.|.+.++.+  .-+..
T Consensus       150 DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky--~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSW  227 (942)
T KOG0973|consen  150 DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY--FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSW  227 (942)
T ss_pred             cceEEEEccccceeeeeeecccccccceEECCccCe--eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeeccc
Confidence            57899999877644 344455568889999999994  44455566666654322   111123333333332  33556


Q ss_pred             CCCCCEEEEEcC
Q 016318          288 NEKGEFWVAIHC  299 (391)
Q Consensus       288 d~~G~lwva~~~  299 (391)
                      +|||.+.++.+.
T Consensus       228 SPDG~~las~nA  239 (942)
T KOG0973|consen  228 SPDGHHLASPNA  239 (942)
T ss_pred             CCCcCeecchhh
Confidence            789988776544

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.95  E-value=0.0013  Score=37.77  Aligned_cols=21  Identities=29%  Similarity=0.803  Sum_probs=18.5

Q ss_pred             ccCCcceeecCCCCEEEEeCC
Q 016318          176 LRFTNDLDIDDEGNVYFTDSS  196 (391)
Q Consensus       176 ~~~~~~l~~d~~G~ly~td~~  196 (391)
                      +..|.+++++++|+||++|+.
T Consensus         1 f~~P~gvav~~~g~i~VaD~~   21 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSG   21 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECC
T ss_pred             CcCCcEEEEeCCCCEEEEECC
Confidence            357999999999999999965

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=96.93  E-value=0.3  Score=44.36  Aligned_cols=176  Identities=14%  Similarity=0.097  Sum_probs=104.1

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF  152 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~  152 (391)
                      +..+-.|+. |.|++.|.....||-++-.....+.                    ...+...++.+.+.+++.||...-.
T Consensus       150 cC~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f~--------------------GH~gDV~slsl~p~~~ntFvSg~cD  208 (343)
T KOG0286|consen  150 CCRFLDDNH-ILTGSGDMTCALWDIETGQQTQVFH--------------------GHTGDVMSLSLSPSDGNTFVSGGCD  208 (343)
T ss_pred             EEEEcCCCc-eEecCCCceEEEEEcccceEEEEec--------------------CCcccEEEEecCCCCCCeEEecccc
Confidence            333434777 9999999999999877222221111                    1246678888888678899875433


Q ss_pred             -CeEEEeCCCCeeE-EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC-eEEE
Q 016318          153 -GLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK-QTTV  229 (391)
Q Consensus       153 -gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~  229 (391)
                       -....|...+... .+...     -.-.|.+.+-|+|.-+.+.+-                 ++..-.||.... ++.+
T Consensus       209 ~~aklWD~R~~~c~qtF~gh-----esDINsv~ffP~G~afatGSD-----------------D~tcRlyDlRaD~~~a~  266 (343)
T KOG0286|consen  209 KSAKLWDVRSGQCVQTFEGH-----ESDINSVRFFPSGDAFATGSD-----------------DATCRLYDLRADQELAV  266 (343)
T ss_pred             cceeeeeccCcceeEeeccc-----ccccceEEEccCCCeeeecCC-----------------CceeEEEeecCCcEEee
Confidence             3556666655433 23211     134788999999988887643                 455556776543 4444


Q ss_pred             eccC--CCCcceEEEccCCCEEEEEeCCCCeEEEEE-eccccCccceeecccCCCCCceEeCCCCCEEE
Q 016318          230 LLRN--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYW-LIGEKAGNLEAFAILPGYPDNVRTNEKGEFWV  295 (391)
Q Consensus       230 ~~~~--~~~~ngia~~~d~~~l~v~et~~~~I~~~~-~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwv  295 (391)
                      +...  ....++++|+..|+.|+.. -....+..++ +++...   .++....+-...+.+.+||.-..
T Consensus       267 ys~~~~~~gitSv~FS~SGRlLfag-y~d~~c~vWDtlk~e~v---g~L~GHeNRvScl~~s~DG~av~  331 (343)
T KOG0286|consen  267 YSHDSIICGITSVAFSKSGRLLFAG-YDDFTCNVWDTLKGERV---GVLAGHENRVSCLGVSPDGMAVA  331 (343)
T ss_pred             eccCcccCCceeEEEcccccEEEee-ecCCceeEeeccccceE---EEeeccCCeeEEEEECCCCcEEE
Confidence            4322  2456899999999955543 4455666665 333221   11221122345677888886443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=96.90  E-value=0.047  Score=48.36  Aligned_cols=133  Identities=14%  Similarity=0.082  Sum_probs=80.1

Q ss_pred             CcEEEEECC-CCeEEEeCCCCeeEE-ceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          143 GDLYIADAY-FGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       143 g~L~V~d~~-~gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      ++-++..++ +.+...|..+++... +..      ...++.+.+.++|++..+..+                  +.|..+
T Consensus       155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilTia~g------------------ssV~Fw  210 (334)
T KOG0278|consen  155 DKCILSSADDKTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILTIAYG------------------SSVKFW  210 (334)
T ss_pred             CceEEeeccCCceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEEEecC------------------ceeEEe
Confidence            344444344 558888888775332 211      135678889999987766543                  467788


Q ss_pred             eCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceee-cccCCCCCceEeCCCCCEEEEEcC
Q 016318          221 DPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF-AILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       221 d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~-~~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      |+++=....-.+-....+...++|+.. +||+......+++|+....  ...+.+ ...+|-.-.++++++|.+|..-..
T Consensus       211 daksf~~lKs~k~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tg--eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  211 DAKSFGLLKSYKMPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTG--EEIGSYNKGHFGPVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             ccccccceeeccCccccccccccCCCc-eEEecCcceEEEEEeccCC--ceeeecccCCCCceEEEEECCCCceeeccCC
Confidence            876433222112122334556889886 8898777788999986532  112223 123343456889999999877555


Q ss_pred             CCc
Q 016318          300 RRS  302 (391)
Q Consensus       300 ~~~  302 (391)
                      ..+
T Consensus       288 DGT  290 (334)
T KOG0278|consen  288 DGT  290 (334)
T ss_pred             Cce
Confidence            444

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=96.87  E-value=0.037  Score=51.00  Aligned_cols=48  Identities=19%  Similarity=0.304  Sum_probs=41.9

Q ss_pred             CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEe
Q 016318          187 EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       187 ~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~e  253 (391)
                      +|++|+.|++                 +|.+.++|+++|+.+.+..-..+|.|+++.  |++++|+-
T Consensus       212 dgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgm  259 (335)
T TIGR03032       212 QGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGL  259 (335)
T ss_pred             CCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEe
Confidence            7899999987                 689999999999999988777899999997  88777763

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.74  E-value=0.0056  Score=38.72  Aligned_cols=38  Identities=21%  Similarity=0.243  Sum_probs=33.5

Q ss_pred             eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318          230 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       230 ~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~  267 (391)
                      +..++..|+|+++++.++.+|++++....|.+.+++|.
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            34567899999999999999999999999999998873

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.72  E-value=0.2  Score=47.59  Aligned_cols=160  Identities=15%  Similarity=0.101  Sum_probs=94.0

Q ss_pred             cccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      +|-.+.-.-|.++||.+.+.++..+--+..||.+.-..+...+.+                   ....+...++-+++-+
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-------------------~~~S~~sc~W~pDg~~  326 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-------------------LGFSVSSCAWCPDGFR  326 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-------------------cCCCcceeEEccCCce
Confidence            444455566777777776666666655666665411111111000                   1223444556664445


Q ss_pred             EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      +.++....+++..|.+++.....    ++.......++++.+||. ++..+.                  +..+..|+.+
T Consensus       327 ~V~Gs~dr~i~~wdlDgn~~~~W----~gvr~~~v~dlait~Dgk~vl~v~~------------------d~~i~l~~~e  384 (519)
T KOG0293|consen  327 FVTGSPDRTIIMWDLDGNILGNW----EGVRDPKVHDLAITYDGKYVLLVTV------------------DKKIRLYNRE  384 (519)
T ss_pred             eEecCCCCcEEEecCCcchhhcc----cccccceeEEEEEcCCCcEEEEEec------------------ccceeeechh
Confidence            55665567799999987653322    233334578999999996 444432                  2456667665


Q ss_pred             CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      +..-+-+...-+....++++.|++++++. -..+.|..++++.
T Consensus       385 ~~~dr~lise~~~its~~iS~d~k~~Lvn-L~~qei~LWDl~e  426 (519)
T KOG0293|consen  385 ARVDRGLISEEQPITSFSISKDGKLALVN-LQDQEIHLWDLEE  426 (519)
T ss_pred             hhhhhccccccCceeEEEEcCCCcEEEEE-cccCeeEEeecch
Confidence            54433344444456678999999966665 6677888888774

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=96.71  E-value=0.096  Score=54.20  Aligned_cols=176  Identities=14%  Similarity=0.107  Sum_probs=104.0

Q ss_pred             CCCeeEEEecCCEEEEEeCCc--ee-EEEeecCCCcccCCCCCCccccccccCccCcc-ceEEEecCCCcEEEEEC-CCC
Q 016318           79 LGRGPYTGVADGRILFWDGLK--WT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIADA-YFG  153 (391)
Q Consensus        79 ~G~~ly~~~~~g~I~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P-~gi~~d~~~g~L~V~d~-~~g  153 (391)
                      +++.+.+++.++.|.++.-+.  .. .++.                        .--| ..++++. +|++.++.. ..+
T Consensus        65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~R------------------------ftlp~r~~~v~g-~g~~iaagsdD~~  119 (933)
T KOG1274|consen   65 YSNHFLTGSEQNTVLRYKFPSGEEDTILAR------------------------FTLPIRDLAVSG-SGKMIAAGSDDTA  119 (933)
T ss_pred             cccceEEeeccceEEEeeCCCCCccceeee------------------------eeccceEEEEec-CCcEEEeecCcee
Confidence            344578888888888885441  11 1111                        1112 3567876 666655543 356


Q ss_pred             eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC
Q 016318          154 LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN  233 (391)
Q Consensus       154 l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~  233 (391)
                      |-.++..+...+......++    ..-.+..+++|++..+.+.                 +|.|..||..++.......+
T Consensus       120 vK~~~~~D~s~~~~lrgh~a----pVl~l~~~p~~~fLAvss~-----------------dG~v~iw~~~~~~~~~tl~~  178 (933)
T KOG1274|consen  120 VKLLNLDDSSQEKVLRGHDA----PVLQLSYDPKGNFLAVSSC-----------------DGKVQIWDLQDGILSKTLTG  178 (933)
T ss_pred             EEEEeccccchheeecccCC----ceeeeeEcCCCCEEEEEec-----------------CceEEEEEcccchhhhhccc
Confidence            77777766554444444443    2567889999998877654                 68999999988876554433


Q ss_pred             CC---------CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec---cc-CCCCCceEeCCCCCEEEEEcCC
Q 016318          234 LQ---------FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA---IL-PGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       234 ~~---------~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~---~~-~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      +.         .-+-++++|++..+.+. ...+.|..|..+|-.    ..|.   +. ...-..+..++.|.+..|..-.
T Consensus       179 v~k~n~~~~s~i~~~~aW~Pk~g~la~~-~~d~~Vkvy~r~~we----~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~  253 (933)
T KOG1274|consen  179 VDKDNEFILSRICTRLAWHPKGGTLAVP-PVDNTVKVYSRKGWE----LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD  253 (933)
T ss_pred             CCccccccccceeeeeeecCCCCeEEee-ccCCeEEEEccCCce----eheeecccccccceEEEEEcCCCcEEeeeccC
Confidence            22         12346899996556555 446789999876531    1111   11 0112346678888766665544


Q ss_pred             Cchhh
Q 016318          301 RSLYS  305 (391)
Q Consensus       301 ~~~~~  305 (391)
                      ..+.+
T Consensus       254 g~I~v  258 (933)
T KOG1274|consen  254 GQILV  258 (933)
T ss_pred             CcEEE
Confidence            44444

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.64  E-value=0.54  Score=43.18  Aligned_cols=178  Identities=15%  Similarity=0.095  Sum_probs=103.4

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC--CcEEEEE
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT--GDLYIAD  149 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~--g~L~V~d  149 (391)
                      .++|+  +|..+.+|+.|-+|..||..+-.....                    .....++...+.|++.-  ..|+-|.
T Consensus        47 tavAV--s~~~~aSGssDetI~IYDm~k~~qlg~--------------------ll~HagsitaL~F~~~~S~shLlS~s  104 (362)
T KOG0294|consen   47 TALAV--SGPYVASGSSDETIHIYDMRKRKQLGI--------------------LLSHAGSITALKFYPPLSKSHLLSGS  104 (362)
T ss_pred             eEEEe--cceeEeccCCCCcEEEEeccchhhhcc--------------------eeccccceEEEEecCCcchhheeeec
Confidence            36666  466566778889999998762222211                    11124556667776521  2555554


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                      ....|..++..  ..+.+.+ ..+.. ...+++++.|.|.|-++..+                 ++.+-.+|.-+|+.-.
T Consensus       105 dDG~i~iw~~~--~W~~~~s-lK~H~-~~Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~  163 (362)
T KOG0294|consen  105 DDGHIIIWRVG--SWELLKS-LKAHK-GQVTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAF  163 (362)
T ss_pred             CCCcEEEEEcC--CeEEeee-ecccc-cccceeEecCCCceEEEEcC-----------------CceeeeehhhcCccce
Confidence            33346655543  3333322 11111 23899999999999888744                 4556667776666544


Q ss_pred             eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCCCCCceEeCCCCCEEEEEcC
Q 016318          230 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       230 ~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      ...--..+.-|.++|.|...++.-  +++|-.|.++.     ..+|..  .|--+-++.+...+.+.+|...
T Consensus       164 v~~L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~-----A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~  228 (362)
T KOG0294|consen  164 VLNLKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDN-----ASVFREIENPKRILCATFLDGSELLVGGDN  228 (362)
T ss_pred             eeccCCcceeeEEcCCCCEEEEEe--ccEEEEEeccc-----HhHhhhhhccccceeeeecCCceEEEecCC
Confidence            433335666799999999666653  56777776543     233332  2323445666666667777544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=96.62  E-value=0.095  Score=48.03  Aligned_cols=161  Identities=14%  Similarity=0.200  Sum_probs=87.7

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeCC--cee-EEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      |+-..+|+-.|+|||+.+.+++-||-|-.|+--  +.+ .+.....             .  .........++|.|+. +
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq-------------d--~fMMmd~aVlci~FSR-D  274 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ-------------D--NFMMMDDAVLCISFSR-D  274 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh-------------c--ceeecccceEEEeecc-c
Confidence            556789999999999999999999988887542  111 0000000             0  0111134467888887 5


Q ss_pred             CcEEEEECCCC-eEEEeCCCCee-EEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          143 GDLYIADAYFG-LMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       143 g~L~V~d~~~g-l~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      .++....+..| |-.+...+|.. +.+..    ........+.+.+|+.-..+.+-                  ....|.
T Consensus       275 sEMlAsGsqDGkIKvWri~tG~ClRrFdr----AHtkGvt~l~FSrD~SqiLS~sf------------------D~tvRi  332 (508)
T KOG0275|consen  275 SEMLASGSQDGKIKVWRIETGQCLRRFDR----AHTKGVTCLSFSRDNSQILSASF------------------DQTVRI  332 (508)
T ss_pred             HHHhhccCcCCcEEEEEEecchHHHHhhh----hhccCeeEEEEccCcchhhcccc------------------cceEEE
Confidence            55655544444 33333344432 22211    11224556667777643333321                  122332


Q ss_pred             e-CCCCeE-EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          221 D-PTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       221 d-~~~~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      . .++|+. +.+...-.+.|...+++||..++-+ +..+.|..++.+
T Consensus       333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa-SsDgtvkvW~~K  378 (508)
T KOG0275|consen  333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA-SSDGTVKVWHGK  378 (508)
T ss_pred             eccccchhHHHhcCccccccceEEcCCCCeEEEe-cCCccEEEecCc
Confidence            2 233432 3333445688889999999976655 556677666544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.62  E-value=0.92  Score=45.61  Aligned_cols=44  Identities=18%  Similarity=0.248  Sum_probs=26.3

Q ss_pred             cceEEEEECC-CCCEEEEEeCCCCCeeeceeEEEEECCEEEEecCCC
Q 016318          337 LHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLM  382 (391)
Q Consensus       337 ~~~~v~~~d~-~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs~~~  382 (391)
                      ..+.+.++|. +|+++..++-..+.....  .+...+|++|+++...
T Consensus       414 ~dG~l~ald~~tG~~lW~~~~~~~~~a~P--~~~~~~g~~yv~~~~g  458 (488)
T cd00216         414 ADGYFRAFDATTGKELWKFRTPSGIQATP--MTYEVNGKQYVGVMVG  458 (488)
T ss_pred             CCCeEEEEECCCCceeeEEECCCCceEcC--EEEEeCCEEEEEEEec
Confidence            4466777774 677777765433222111  2235689999987654

The alignment model contains an 8-bladed beta-propeller.

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.61  E-value=0.082  Score=50.90  Aligned_cols=146  Identities=13%  Similarity=0.203  Sum_probs=90.8

Q ss_pred             eccccccCcceEEEcc-CCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCcccCCCCCCccccccccCccCc-cceE
Q 016318           63 KFLNQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR-PLGL  136 (391)
Q Consensus        63 ~~~~~~~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-P~gi  136 (391)
                      .+.|--.|-.++.+-+ .|.++..+..|+.|..|+--    -+++|..                        ... ...+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g------------------------H~k~Vrd~  264 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG------------------------HRKPVRDA  264 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc------------------------chhhhhhh
Confidence            4445455666666666 78877888889988888532    1222210                        112 2355


Q ss_pred             EEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCC
Q 016318          137 RFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       137 ~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ++.. .|.=+.+.++ .-|-.+|.+||+...-...     -..|..+-+.+++ +++++..+                 +
T Consensus       265 ~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----~~~~~cvkf~pd~~n~fl~G~s-----------------d  321 (503)
T KOG0282|consen  265 SFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFHL-----DKVPTCVKFHPDNQNIFLVGGS-----------------D  321 (503)
T ss_pred             hccc-cCCeeeeeecceeeeeeccccceEEEEEec-----CCCceeeecCCCCCcEEEEecC-----------------C
Confidence            6665 4444444344 4477789999976543221     1357778888887 88888755                 6


Q ss_pred             ceEEEEeCCCCeEEE-eccCCCCcceEEEccCCCEEEEEeCCC
Q 016318          215 GRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSV  256 (391)
Q Consensus       215 g~l~~~d~~~~~~~~-~~~~~~~~ngia~~~d~~~l~v~et~~  256 (391)
                      ++|..||..++++.. +...+...+.|.+-++|+. +++.+..
T Consensus       322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r-FissSDd  363 (503)
T KOG0282|consen  322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR-FISSSDD  363 (503)
T ss_pred             CcEEEEeccchHHHHHHHhhhhheeeeEEccCCce-EeeeccC
Confidence            899999998887432 2355667788888888774 3443333

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=96.59  E-value=0.079  Score=50.43  Aligned_cols=148  Identities=20%  Similarity=0.176  Sum_probs=92.1

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      =.+.++.|||.++-+|+.||.+-.||.+.-...+.++.                    ..+-...|.|+. +|.-.+..+
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg--------------------ht~~vk~i~FsE-NGY~Lat~a  408 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG--------------------HTGPVKAISFSE-NGYWLATAA  408 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC--------------------CCCceeEEEecc-CceEEEEEe
Confidence            45788999999777889999887887763223333221                    134456889985 554333334


Q ss_pred             CCC-eEEEeCCCC-eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          151 YFG-LMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       151 ~~g-l~~~d~~~g-~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ..+ +..+|...- .++.+..  +  .....+.+.+|..|...+...+                 +-+|+.++..+++.+
T Consensus       409 dd~~V~lwDLRKl~n~kt~~l--~--~~~~v~s~~fD~SGt~L~~~g~-----------------~l~Vy~~~k~~k~W~  467 (506)
T KOG0289|consen  409 DDGSVKLWDLRKLKNFKTIQL--D--EKKEVNSLSFDQSGTYLGIAGS-----------------DLQVYICKKKTKSWT  467 (506)
T ss_pred             cCCeEEEEEehhhcccceeec--c--ccccceeEEEcCCCCeEEeecc-----------------eeEEEEEecccccce
Confidence            455 888887532 1222211  1  1235788999999976665532                 347888887777665


Q ss_pred             Eec---cCCCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 016318          229 VLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY  262 (391)
Q Consensus       229 ~~~---~~~~~~ngia~~~d~~~l~v~et~~~~I~~~  262 (391)
                      ...   +.....+|+.|...-+  |++.+...++.++
T Consensus       468 ~~~~~~~~sg~st~v~Fg~~aq--~l~s~smd~~l~~  502 (506)
T KOG0289|consen  468 EIKELADHSGLSTGVRFGEHAQ--YLASTSMDAILRL  502 (506)
T ss_pred             eeehhhhcccccceeeecccce--EEeeccchhheEE
Confidence            442   3334678899876664  5565667777665

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.56  E-value=0.11  Score=52.68  Aligned_cols=201  Identities=15%  Similarity=0.105  Sum_probs=113.0

Q ss_pred             cceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeE-EEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318           60 SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTD-FAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (391)
Q Consensus        60 ~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~  138 (391)
                      .+.++.|   ||  ++++++|+.+|+...+ +|..++-..... +....+    .|               ..+...+++
T Consensus        16 ~epiYtG---G~--~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~----ed---------------~d~ita~~l   70 (775)
T KOG0319|consen   16 LEPIYTG---GP--VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSN----ED---------------EDEITALAL   70 (775)
T ss_pred             ccceecC---Cc--eeECCCCCEEEEecCc-eEEEEEccCCceecccCCc----cc---------------hhhhheeee
Confidence            3444444   55  9999999988877655 577666541111 111111    11               123456778


Q ss_pred             ecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEE
Q 016318          139 DKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVL  218 (391)
Q Consensus       139 d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~  218 (391)
                      ++++..|+.+....-+-.++.+++++..........   ...-+++++.|.+..+.                 ..+|++.
T Consensus        71 ~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~---Pvi~ma~~~~g~LlAtg-----------------gaD~~v~  130 (775)
T KOG0319|consen   71 TPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEA---PVITMAFDPTGTLLATG-----------------GADGRVK  130 (775)
T ss_pred             cCCccEEEEeeccceEEEEEcccchHhHhHhhccCC---CeEEEEEcCCCceEEec-----------------cccceEE
Confidence            874444565543333566677777544333221111   24568899998765554                 2368899


Q ss_pred             EEeCCCCeEEEeccCCC-CcceEEEccCCCE-EEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEE
Q 016318          219 KYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSF-FVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       219 ~~d~~~~~~~~~~~~~~-~~ngia~~~d~~~-l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva  296 (391)
                      .+|.+.+.......+.. ....+.++|+.+. ++++-...+.+..|++..... .............++.+.+++.-.++
T Consensus       131 VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d~~~~ls  209 (775)
T KOG0319|consen  131 VWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSEDSLELLS  209 (775)
T ss_pred             EEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HHHHHHhhhhheeeeeeccCCceEEE
Confidence            99998888877766644 4567888888654 444445567788887653211 11111111123456777777775555


Q ss_pred             EcCCCchhhh
Q 016318          297 IHCRRSLYSH  306 (391)
Q Consensus       297 ~~~~~~~~~~  306 (391)
                      ........+|
T Consensus       210 ~~RDkvi~vw  219 (775)
T KOG0319|consen  210 VGRDKVIIVW  219 (775)
T ss_pred             eccCcEEEEe
Confidence            4444443333

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.56  E-value=0.091  Score=50.65  Aligned_cols=109  Identities=14%  Similarity=0.230  Sum_probs=71.3

Q ss_pred             cCccCccceEEEecCCCc-EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhhe
Q 016318          127 EHICGRPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFM  205 (391)
Q Consensus       127 ~~~~g~P~gi~~d~~~g~-L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~  205 (391)
                      +...|+...+.+++ +|. +.|++....|+.+|.++|.++.+.....+    ...+++..++++ |++=+   ++     
T Consensus       398 e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~----lItdf~~~~nsr-~iAYa---fP-----  463 (668)
T COG4946         398 EKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG----LITDFDWHPNSR-WIAYA---FP-----  463 (668)
T ss_pred             eCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccc----eeEEEEEcCCce-eEEEe---cC-----
Confidence            34467788888988 555 77777667799999999988876543332    356667777765 33321   00     


Q ss_pred             eeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEe
Q 016318          206 QLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       206 ~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~e  253 (391)
                          ++.-+-.+-.||..+++.--+...-..-..-|++||+++||+-.
T Consensus       464 ----~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         464 ----EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ----cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence                11112346678888777655554444444568999999999874

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.46  E-value=0.79  Score=42.95  Aligned_cols=146  Identities=18%  Similarity=0.264  Sum_probs=88.8

Q ss_pred             ceEEEecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318          134 LGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      ..|+..+ +|..|+..+.  ..|...|++++....+...-    +....-+...|||...|+.+-               
T Consensus       199 tsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g----lgg~slLkwSPdgd~lfaAt~---------------  258 (445)
T KOG2139|consen  199 TSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKG----LGGFSLLKWSPDGDVLFAATC---------------  258 (445)
T ss_pred             eEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccC----CCceeeEEEcCCCCEEEEecc---------------
Confidence            4677877 6777766554  24889999988766553111    123345677999988887632               


Q ss_pred             CCCceEEE-EeCC-CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC------c--cceeecccC--
Q 016318          212 EDTGRVLK-YDPT-TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA------G--NLEAFAILP--  279 (391)
Q Consensus       212 ~~~g~l~~-~d~~-~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~------g--~~~~~~~~~--  279 (391)
                        + ++++ ++.. +...+...-+-....+-+++|+|++|+++-....+|++....+...      +  .....++++  
T Consensus       259 --d-avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~  335 (445)
T KOG2139|consen  259 --D-AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV  335 (445)
T ss_pred             --c-ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence              2 3333 3221 1111222222235567789999999999988888999998775311      1  111122321  


Q ss_pred             ----------CCCCceEeCCCCCEEEEEcCCCc
Q 016318          280 ----------GYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       280 ----------g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                                |.+..|+.|+.|+..+....+..
T Consensus       336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             hhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence                      34667999999997777666543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.43  E-value=0.059  Score=55.18  Aligned_cols=150  Identities=19%  Similarity=0.113  Sum_probs=95.8

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~  151 (391)
                      .+++.|.-++.+.++..+|-+..|+-++-......                     .....+.++..+...+-+-++...
T Consensus       497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l---------------------~l~~~~~~iv~hr~s~l~a~~~dd  555 (910)
T KOG1539|consen  497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL---------------------RLGSSITGIVYHRVSDLLAIALDD  555 (910)
T ss_pred             eEEEecCCCceEEEccCcceEEEEecCCcceeeee---------------------ccCCCcceeeeeehhhhhhhhcCc
Confidence            47889988888888888887777765522211111                     012224456665534444445445


Q ss_pred             CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318          152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       152 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  231 (391)
                      ..|..+|..|.++.   +.+.|. ....+++++.+||+-.++.+.                 ++.|..||..++...-..
T Consensus       556 f~I~vvD~~t~kvv---R~f~gh-~nritd~~FS~DgrWlisasm-----------------D~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  556 FSIRVVDVVTRKVV---REFWGH-GNRITDMTFSPDGRWLISASM-----------------DSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             eeEEEEEchhhhhh---HHhhcc-ccceeeeEeCCCCcEEEEeec-----------------CCcEEEEeccCcceeeeE
Confidence            67999998875433   222221 246899999999986665543                 578999998877653322


Q ss_pred             cCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          232 RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       232 ~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                      .--..+..+.++|.|++|..+-...+.|+.+.
T Consensus       615 ~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  615 LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             ecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            22235568999999998887766667777764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.13  Score=48.61  Aligned_cols=186  Identities=14%  Similarity=0.142  Sum_probs=103.9

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEe-CCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWD-GLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      -.+++..+|..+-++..||.+..|+ |+. .+..                    ....+.+....|.|++ ++.+.+.-.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l--------------------~e~~~~~eV~DL~FS~-dgk~lasig  205 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTIL--------------------EEIAHHAEVKDLDFSP-DGKFLASIG  205 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc-hhhh--------------------hhHhhcCccccceeCC-CCcEEEEec
Confidence            5778889988888999999888887 541 1110                    1111245567889998 787777655


Q ss_pred             CCCeEEEeCCCCe-eEEceeccCCC-cccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC--CC
Q 016318          151 YFGLMKVGPEGGL-ATSLATEAEGV-PLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT--TK  225 (391)
Q Consensus       151 ~~gl~~~d~~~g~-~~~~~~~~~~~-~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~  225 (391)
                      .....+++.++|. +... ++.+.. .+...+- ..|+ ...+++.+..               .+.+++..++..  .+
T Consensus       206 ~d~~~VW~~~~g~~~a~~-t~~~k~~~~~~cRF-~~d~~~~~l~laa~~---------------~~~~~v~~~~~~~w~~  268 (398)
T KOG0771|consen  206 ADSARVWSVNTGAALARK-TPFSKDEMFSSCRF-SVDNAQETLRLAASQ---------------FPGGGVRLCDISLWSG  268 (398)
T ss_pred             CCceEEEEeccCchhhhc-CCcccchhhhhcee-cccCCCceEEEEEec---------------CCCCceeEEEeeeecc
Confidence            5567777777662 1111 111111 1112221 2222 2367776632               234555544432  12


Q ss_pred             ----eEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcC
Q 016318          226 ----QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       226 ----~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~  299 (391)
                          +.+...........++++.||+++-+. |..+.|..|....  ......+.. ..+...++.+.|+-+..+....
T Consensus       269 ~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG-T~dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs  344 (398)
T KOG0771|consen  269 SNFLRLRKKIKRFKSISSLAVSDDGKFLALG-TMDGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS  344 (398)
T ss_pred             ccccchhhhhhccCcceeEEEcCCCcEEEEe-ccCCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcCccccccc
Confidence                333334445567789999999988777 6678888886432  111222221 1245667777777665555433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.36  E-value=0.78  Score=41.82  Aligned_cols=191  Identities=20%  Similarity=0.251  Sum_probs=95.9

Q ss_pred             eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE--e
Q 016318          154 LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV--L  230 (391)
Q Consensus       154 l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~--~  230 (391)
                      -+.||+++++.-.......+. . +--.=++.+||. +|.|+...+             ...|-|-.||...+-.++  +
T Consensus        93 ~~vfD~~~~~~pv~~~s~~~R-H-fyGHGvfs~dG~~LYATEndfd-------------~~rGViGvYd~r~~fqrvgE~  157 (366)
T COG3490          93 AMVFDPNGAQEPVTLVSQEGR-H-FYGHGVFSPDGRLLYATENDFD-------------PNRGVIGVYDAREGFQRVGEF  157 (366)
T ss_pred             EEEECCCCCcCcEEEecccCc-e-eecccccCCCCcEEEeecCCCC-------------CCCceEEEEecccccceeccc
Confidence            667888876533332222221 1 222336788996 666653211             123456678765332222  1


Q ss_pred             ccCCCCcceEEEccCCCEEEEEeCCCCeEEEE--------Eeccc---------cCccceeecccC-----CCCCceEeC
Q 016318          231 LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY--------WLIGE---------KAGNLEAFAILP-----GYPDNVRTN  288 (391)
Q Consensus       231 ~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~--------~~~g~---------~~g~~~~~~~~~-----g~p~~i~~d  288 (391)
                      ..-.-.|.-+.+.+||+.+.+++   +.|...        +++.-         ..|+.-.-..+|     -....+.++
T Consensus       158 ~t~GiGpHev~lm~DGrtlvvan---GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g  234 (366)
T COG3490         158 STHGIGPHEVTLMADGRTLVVAN---GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG  234 (366)
T ss_pred             ccCCcCcceeEEecCCcEEEEeC---CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeC
Confidence            12223678899999999887774   333333        11110         001100000122     123457889


Q ss_pred             CCCCEEEEEcCCCc--hhhhhhhcCccceeeeeecCcccee-------eeEEeecCccceEEEEECCCCCEEEEEeCCCC
Q 016318          289 EKGEFWVAIHCRRS--LYSHLMALYPKIRHFLLKLPISAKT-------HYLIHVGGRLHAMAVKYSPEGKILQVLEDSKG  359 (391)
Q Consensus       289 ~~G~lwva~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g  359 (391)
                      .+|++|.+......  ..-..+..+ .-++.+.-++.+.+.       ..++.+. ...+.|..-+|.|+...++...+|
T Consensus       235 ~dgtvwfgcQy~G~~~d~ppLvg~~-~~g~~l~~~~~pee~~~~~anYigsiA~n-~~~glV~lTSP~GN~~vi~da~tG  312 (366)
T COG3490         235 RDGTVWFGCQYRGPRNDLPPLVGHF-RKGEPLEFLDLPEEQTAAFANYIGSIAAN-RRDGLVALTSPRGNRAVIWDAATG  312 (366)
T ss_pred             CCCcEEEEEEeeCCCccCCcceeec-cCCCcCcccCCCHHHHHHHHhhhhheeec-ccCCeEEEecCCCCeEEEEEcCCC
Confidence            99999999764222  111111111 123334444444321       1222222 334667777899999988888888


Q ss_pred             Ceeec
Q 016318          360 KVVKA  364 (391)
Q Consensus       360 ~~~~~  364 (391)
                      .+...
T Consensus       313 ~vv~~  317 (366)
T COG3490         313 AVVSE  317 (366)
T ss_pred             cEEec
Confidence            76554

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.34  E-value=0.59  Score=44.85  Aligned_cols=138  Identities=22%  Similarity=0.345  Sum_probs=72.8

Q ss_pred             CCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecC----CCC---EEEEeCCCcccchhheeeecccCC
Q 016318          142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD----EGN---VYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       142 ~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~----~G~---ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      ...|++++.. .||+.+|.++.++..+.   .|    .+|.+++-.    .|.   |-+++...            ++..
T Consensus        67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~---~G----r~NNVDvrygf~l~g~~vDlavas~R~------------~g~n  127 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDGKELQSLP---VG----RPNNVDVRYGFPLNGKTVDLAVASDRS------------DGRN  127 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS-EEEEE----SS-----EEEEEEEEEEEETTEEEEEEEEEE-C------------CCT-
T ss_pred             ccceEEEEeCCCCEEEEcCCCcEEEeec---CC----CcceeeeecceecCCceEEEEEEecCc------------CCCC
Confidence            4456666554 57999999988776652   12    345554421    222   22222100            0011


Q ss_pred             CceEEEEeCCCCeEEEec-------cCCCCcceEEEcc---CCCE-EEEEeCCCCeEEEEEeccccCcc--ceeec--cc
Q 016318          214 TGRVLKYDPTTKQTTVLL-------RNLQFPNGLSLSK---DKSF-FVFCEGSVGRLHKYWLIGEKAGN--LEAFA--IL  278 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~-------~~~~~~ngia~~~---d~~~-l~v~et~~~~I~~~~~~g~~~g~--~~~~~--~~  278 (391)
                      .=++|++|+.++.++.+.       ..+..+.|+|+..   +|++ .++. ...+++..|.+.....+.  .+...  .+
T Consensus       128 ~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~-~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~  206 (381)
T PF02333_consen  128 SLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVN-GKDGRVEQYELTDDGDGKVSATLVREFKV  206 (381)
T ss_dssp             EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEE-ETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred             eEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEe-cCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence            125888999888776653       2344578999853   3553 3344 445778888776433332  12222  24


Q ss_pred             CCCCCceEeCC-CCCEEEEEcC
Q 016318          279 PGYPDNVRTNE-KGEFWVAIHC  299 (391)
Q Consensus       279 ~g~p~~i~~d~-~G~lwva~~~  299 (391)
                      ++.+.++.+|. .|.+|++.-.
T Consensus       207 ~sQ~EGCVVDDe~g~LYvgEE~  228 (381)
T PF02333_consen  207 GSQPEGCVVDDETGRLYVGEED  228 (381)
T ss_dssp             SS-EEEEEEETTTTEEEEEETT
T ss_pred             CCcceEEEEecccCCEEEecCc
Confidence            56788888875 5679998654

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.32  E-value=0.71  Score=43.45  Aligned_cols=111  Identities=19%  Similarity=0.307  Sum_probs=68.0

Q ss_pred             CCcEEEEECCC-----CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCc
Q 016318          142 TGDLYIADAYF-----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       142 ~g~L~V~d~~~-----gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      .+++||.|...     .++.+|.+++++.=...  .    .+.-.++++++| .+|++++  -|.|.      ..+..+.
T Consensus         2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~--~----g~~~~~~~spdgk~~y~a~T--~~sR~------~rG~RtD   67 (342)
T PF06433_consen    2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGMID--T----GFLGNVALSPDGKTIYVAET--FYSRG------TRGERTD   67 (342)
T ss_dssp             TTEEEEEE-GGGGSSEEEEEEETTTTEEEEEEE--E----ESSEEEEE-TTSSEEEEEEE--EEEET------TEEEEEE
T ss_pred             CcEEEEECCccccccceEEEEECCCCcEEEEee--c----ccCCceeECCCCCEEEEEEE--EEecc------cccccee
Confidence            46888988732     38999988876432211  1    133347788888 5887763  22222      2233455


Q ss_pred             eEEEEeCCCCeEEE--ecc------CCCCcceEEEccCCCEEEEEeCC-CCeEEEEEecc
Q 016318          216 RVLKYDPTTKQTTV--LLR------NLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIG  266 (391)
Q Consensus       216 ~l~~~d~~~~~~~~--~~~------~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~g  266 (391)
                      -|-.||++|-+.+.  .+.      .+.+++-.+++.||+++||.+-. ...|.+++++.
T Consensus        68 vv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~  127 (342)
T PF06433_consen   68 VVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA  127 (342)
T ss_dssp             EEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT
T ss_pred             EEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCC
Confidence            68889998875432  221      13467889999999999998754 45799998765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.32  E-value=1.1  Score=43.17  Aligned_cols=147  Identities=14%  Similarity=0.065  Sum_probs=80.2

Q ss_pred             EccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeE
Q 016318           76 FDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLM  155 (391)
Q Consensus        76 ~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~  155 (391)
                      ++.+|+ +|+++.+|.|..++++.....-..      .+..         ....++-|.  .. . +|++|+++....++
T Consensus        65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~------~~~~---------~~~~~~~~~--~~-~-~G~i~~g~~~g~~y  124 (370)
T COG1520          65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSY------PLLG---------AVAQLSGPI--LG-S-DGKIYVGSWDGKLY  124 (370)
T ss_pred             EeeCCe-EEEecCCCcEEEEeCCCCcEEecc------cCcC---------cceeccCce--EE-e-CCeEEEecccceEE
Confidence            455787 999999999999998832221100      0100         000122232  22 2 68899998665699


Q ss_pred             EEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc---
Q 016318          156 KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR---  232 (391)
Q Consensus       156 ~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~---  232 (391)
                      ++|..+|+..-.. ...+ ... ..+-++-.++.+|+.+.                  +|.++++|.++|+..-..+   
T Consensus       125 ~ld~~~G~~~W~~-~~~~-~~~-~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~  183 (370)
T COG1520         125 ALDASTGTLVWSR-NVGG-SPY-YASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLKWTYETPA  183 (370)
T ss_pred             EEECCCCcEEEEE-ecCC-CeE-EecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEEEEEecCC
Confidence            9999766533221 1122 011 11223444788888842                  3789999998887643311   


Q ss_pred             --CCCCcceEEEccCCCEEEEEeCC-CCeEEEEEec
Q 016318          233 --NLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLI  265 (391)
Q Consensus       233 --~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~  265 (391)
                        ......... ..++. +|+.... +..++.++..
T Consensus       184 ~~~~~~~~~~~-~~~~~-vy~~~~~~~~~~~a~~~~  217 (370)
T COG1520         184 PLSLSIYGSPA-IASGT-VYVGSDGYDGILYALNAE  217 (370)
T ss_pred             ccccccccCce-eecce-EEEecCCCcceEEEEEcc
Confidence              111222222 23454 7776442 4478888763

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=96.26  E-value=0.83  Score=41.12  Aligned_cols=188  Identities=10%  Similarity=0.054  Sum_probs=109.2

Q ss_pred             EEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           74 MAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        74 i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      |-+..+|+++|++..|.....|-..   ..-++                       ...-|..+.+.+|.+...|..+.+
T Consensus        16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-----------------------~GHtGavW~~Did~~s~~liTGSA   72 (327)
T KOG0643|consen   16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-----------------------DGHTGAVWCCDIDWDSKHLITGSA   72 (327)
T ss_pred             EEecCCCcEEEEecCCCCceEEEecCCceeeee-----------------------cCCCceEEEEEecCCcceeeeccc
Confidence            4466789988988888766655321   22222                       112456677778774556666666


Q ss_pred             CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC-------
Q 016318          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT-------  223 (391)
Q Consensus       151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-------  223 (391)
                      .+.+-.+|.++|+.......  +   .....+.++.+|++....+-.            .+...+.|..||..       
T Consensus        73 D~t~kLWDv~tGk~la~~k~--~---~~Vk~~~F~~~gn~~l~~tD~------------~mg~~~~v~~fdi~~~~~~~~  135 (327)
T KOG0643|consen   73 DQTAKLWDVETGKQLATWKT--N---SPVKRVDFSFGGNLILASTDK------------QMGYTCFVSVFDIRDDSSDID  135 (327)
T ss_pred             cceeEEEEcCCCcEEEEeec--C---CeeEEEeeccCCcEEEEEehh------------hcCcceEEEEEEccCChhhhc
Confidence            67777888888865433221  1   234567788888765543210            01123445556544       


Q ss_pred             CCe-EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          224 TKQ-TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       224 ~~~-~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      ..+ ..++...-..++..-++|-+++|+ +-..++.|.+|++..... ..+.-.......++|..+++..++++......
T Consensus       136 s~ep~~kI~t~~skit~a~Wg~l~~~ii-~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt  213 (327)
T KOG0643|consen  136 SEEPYLKIPTPDSKITSALWGPLGETII-AGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTYFITGSKDTT  213 (327)
T ss_pred             ccCceEEecCCccceeeeeecccCCEEE-EecCCCcEEEEEcccCce-eeechhhhccccccccccCCcceEEecccCcc
Confidence            222 233333335667777899999665 446788999998653210 00110111234678999999999998665444


Q ss_pred             h
Q 016318          303 L  303 (391)
Q Consensus       303 ~  303 (391)
                      .
T Consensus       214 a  214 (327)
T KOG0643|consen  214 A  214 (327)
T ss_pred             c
Confidence            3

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=96.21  E-value=0.15  Score=48.41  Aligned_cols=193  Identities=13%  Similarity=0.133  Sum_probs=106.4

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      |-...-..++|.|+|+.+-+++.|..=.-||-..-.+..                    ..+...--..+++|.+ +|.|
T Consensus       259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL--------------------~QEGHs~~v~~iaf~~-DGSL  317 (459)
T KOG0272|consen  259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL--------------------LQEGHSKGVFSIAFQP-DGSL  317 (459)
T ss_pred             cchhhheeeeecCCCceeeecccccchhhcccccchhhH--------------------hhcccccccceeEecC-CCce
Confidence            334455678899999988888888643334433111110                    1111122346888988 7888


Q ss_pred             EEEECCCCe-EEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          146 YIADAYFGL-MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       146 ~V~d~~~gl-~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      .....-..+ ...|..+|....+..   | .+....+|+++|+|....|.++                 ++..-.+|...
T Consensus       318 ~~tGGlD~~~RvWDlRtgr~im~L~---g-H~k~I~~V~fsPNGy~lATgs~-----------------Dnt~kVWDLR~  376 (459)
T KOG0272|consen  318 AATGGLDSLGRVWDLRTGRCIMFLA---G-HIKEILSVAFSPNGYHLATGSS-----------------DNTCKVWDLRM  376 (459)
T ss_pred             eeccCccchhheeecccCcEEEEec---c-cccceeeEeECCCceEEeecCC-----------------CCcEEEeeecc
Confidence            765433333 345777776554432   2 2456789999999988787754                 45555555543


Q ss_pred             CeE-EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          225 KQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       225 ~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      .+. -++...-.....|.++|+....+++....+.+..+.-.+  -...+.++...+-.-++.+.++|.+.++....|+
T Consensus       377 r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT  453 (459)
T KOG0272|consen  377 RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT  453 (459)
T ss_pred             cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCCceEEEeccCce
Confidence            222 122222234567889986555666656666555543221  1112222222223345667788876666555444

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=96.16  E-value=0.81  Score=40.06  Aligned_cols=214  Identities=15%  Similarity=0.202  Sum_probs=101.0

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEe--ecCC--CcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAF--TSNN--RSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      +.-.+++|.|.|. +|+-..+.+-+|+-.- .......  ....  .+..|.         ...+..|...+.++++ .|
T Consensus        33 qairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~k---------r~khhkgsiyc~~ws~-~g  101 (350)
T KOG0641|consen   33 QAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCK---------RNKHHKGSIYCTAWSP-CG  101 (350)
T ss_pred             hheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEee---------eccccCccEEEEEecC-cc
Confidence            4667899999999 7766666666666221 1100000  0000  011222         2233456677888888 78


Q ss_pred             cEEEEECCCC---eEEEeCCCCeeEEce---eccCCC--cccC------Ccce-eecC--CCCEEEEeCCCcccchh---
Q 016318          144 DLYIADAYFG---LMKVGPEGGLATSLA---TEAEGV--PLRF------TNDL-DIDD--EGNVYFTDSSTNYQRRN---  203 (391)
Q Consensus       144 ~L~V~d~~~g---l~~~d~~~g~~~~~~---~~~~~~--~~~~------~~~l-~~d~--~G~ly~td~~~~~~~~~---  203 (391)
                      +|+...+...   ++.||.+|....-..   ...+|.  .+.|      -..+ +...  |=+||++|.+..-+.+.   
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg  181 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG  181 (350)
T ss_pred             CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence            8877644322   666666653321100   011111  0000      0112 2222  33799998553322110   


Q ss_pred             ---hee--------eecccCCCceEEEEeCCCC-eEEEecc-----CC--CCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318          204 ---FMQ--------LVFSAEDTGRVLKYDPTTK-QTTVLLR-----NL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  264 (391)
Q Consensus       204 ---~~~--------~~~~~~~~g~l~~~d~~~~-~~~~~~~-----~~--~~~ngia~~~d~~~l~v~et~~~~I~~~~~  264 (391)
                         +++        .+..+..+..+-.||..-. -+.++..     ++  .....++++|.|+ |+++.........|++
T Consensus       182 htghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  182 HTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDI  260 (350)
T ss_pred             CcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEEe
Confidence               011        0112222333333443211 1122211     11  1234688999999 7777777778899998


Q ss_pred             ccccCccceeecccCCCCCceEeCCCCCEEEE
Q 016318          265 IGEKAGNLEAFAILPGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       265 ~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva  296 (391)
                      .|...  .+.|.-...-.+.+++++.-.+.+.
T Consensus       261 rg~r~--iq~f~phsadir~vrfsp~a~yllt  290 (350)
T KOG0641|consen  261 RGGRM--IQRFHPHSADIRCVRFSPGAHYLLT  290 (350)
T ss_pred             eCCce--eeeeCCCccceeEEEeCCCceEEEE
Confidence            88532  2223211122456778876554444

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.15  E-value=0.45  Score=41.44  Aligned_cols=121  Identities=18%  Similarity=0.178  Sum_probs=72.4

Q ss_pred             CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc
Q 016318          153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR  232 (391)
Q Consensus       153 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  232 (391)
                      .|+.++..+..+..+.....+    ...+++-.|+|+-++.-.+               .....+..||.+...+..+. 
T Consensus        40 ~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~g---------------~~~~~v~lyd~~~~~i~~~~-   99 (194)
T PF08662_consen   40 ELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIYG---------------SMPAKVTLYDVKGKKIFSFG-   99 (194)
T ss_pred             EEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEEc---------------cCCcccEEEcCcccEeEeec-
Confidence            477777665544444222111    3788899999864332211               11247888888755554443 


Q ss_pred             CCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeeccc-CCCCCceEeCCCCCEEEEEcC
Q 016318          233 NLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAIL-PGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       233 ~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~-~g~p~~i~~d~~G~lwva~~~  299 (391)
                       -...|.|.++|+|+++.++...  .+.|..++...     .+.+... ......+..+++|+++++...
T Consensus       100 -~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  100 -TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             -CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence             2456889999999988887643  34577776542     2222221 122456888999997776543

>PRK13684 Ycf48-like protein; Provisional

Probab=96.10  E-value=1.4  Score=42.04  Aligned_cols=183  Identities=14%  Similarity=0.187  Sum_probs=88.1

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      .-+|+|..+.+.++++ ..|.|++=...  .|+......+                   ....+...+.+..  ++.|++
T Consensus        48 l~~v~F~d~~~g~avG-~~G~il~T~DgG~tW~~~~~~~~-------------------~~~~~l~~v~~~~--~~~~~~  105 (334)
T PRK13684         48 LLDIAFTDPNHGWLVG-SNRTLLETNDGGETWEERSLDLP-------------------EENFRLISISFKG--DEGWIV  105 (334)
T ss_pred             eEEEEEeCCCcEEEEE-CCCEEEEEcCCCCCceECccCCc-------------------ccccceeeeEEcC--CcEEEe
Confidence            3457776555534444 46777776332  5554321100                   0012234667753  457777


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      .....|++-+-.+...+.+..... .+ ..+..+....++.+|+...                  .|.+++-+...+..+
T Consensus       106 G~~g~i~~S~DgG~tW~~~~~~~~-~~-~~~~~i~~~~~~~~~~~g~------------------~G~i~~S~DgG~tW~  165 (334)
T PRK13684        106 GQPSLLLHTTDGGKNWTRIPLSEK-LP-GSPYLITALGPGTAEMATN------------------VGAIYRTTDGGKNWE  165 (334)
T ss_pred             CCCceEEEECCCCCCCeEccCCcC-CC-CCceEEEEECCCcceeeec------------------cceEEEECCCCCCce
Confidence            544446665433334444321100 00 1233343333445565543                  366777665555555


Q ss_pred             EeccCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcC
Q 016318          229 VLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       229 ~~~~~~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      .+.... ...+++++.+++.++.+  ..++.+++-.-+|.  .+.+.... ......++.+.++|++|++...
T Consensus       166 ~~~~~~~g~~~~i~~~~~g~~v~~--g~~G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~  234 (334)
T PRK13684        166 ALVEDAAGVVRNLRRSPDGKYVAV--SSRGNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDGNLWMLARG  234 (334)
T ss_pred             eCcCCCcceEEEEEECCCCeEEEE--eCCceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCCCEEEEecC
Confidence            544332 24567888888864433  33456666532221  11111111 1123456777788888876444

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.06  E-value=0.93  Score=43.66  Aligned_cols=69  Identities=23%  Similarity=0.224  Sum_probs=48.0

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~  151 (391)
                      -++|+.+||+.+.+|..+..|..|+.+....+...                    ...++...+++|-....+||.+.+.
T Consensus       206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~--------------------~ghr~~V~~L~fr~gt~~lys~s~D  265 (479)
T KOG0299|consen  206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF--------------------KGHRGAVSSLAFRKGTSELYSASAD  265 (479)
T ss_pred             EEEEEcCCCcEEEecCCCceEEEecCcccchhhcc--------------------cccccceeeeeeecCccceeeeecC
Confidence            36789999997777888888888877633332211                    1235667788887656789999888


Q ss_pred             CCeEEEeCC
Q 016318          152 FGLMKVGPE  160 (391)
Q Consensus       152 ~gl~~~d~~  160 (391)
                      .++-.++.+
T Consensus       266 rsvkvw~~~  274 (479)
T KOG0299|consen  266 RSVKVWSID  274 (479)
T ss_pred             CceEEEehh
Confidence            887666654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.04  E-value=0.71  Score=42.05  Aligned_cols=107  Identities=15%  Similarity=0.156  Sum_probs=55.9

Q ss_pred             ccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCce--EEEEeCCCCeEEEec--cC-----CCCcceEEEccCC
Q 016318          176 LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGR--VLKYDPTTKQTTVLL--RN-----LQFPNGLSLSKDK  246 (391)
Q Consensus       176 ~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~--l~~~d~~~~~~~~~~--~~-----~~~~ngia~~~d~  246 (391)
                      ......++.++||++|+....             ++.++..  |+-....++.++.+.  +.     -++.-.||...+.
T Consensus       225 ~lSiRHld~g~dgtvwfgcQy-------------~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~  291 (366)
T COG3490         225 QLSIRHLDIGRDGTVWFGCQY-------------RGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD  291 (366)
T ss_pred             hcceeeeeeCCCCcEEEEEEe-------------eCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC
Confidence            356788999999999999732             1222221  222223333333321  00     1234468887777


Q ss_pred             CEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318          247 SFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       247 ~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      .++.++...+++...++.+.   |....-..++. ..++.....| +-|++..+
T Consensus       292 glV~lTSP~GN~~vi~da~t---G~vv~~a~l~d-aaGva~~~~g-f~vssg~G  340 (366)
T COG3490         292 GLVALTSPRGNRAVIWDAAT---GAVVSEAALPD-AAGVAAAKGG-FAVSSGQG  340 (366)
T ss_pred             CeEEEecCCCCeEEEEEcCC---CcEEecccccc-cccceeccCc-eEEecCCc
Confidence            76777766667777766442   33222222221 2356665544 55555444

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=95.97  E-value=0.12  Score=47.31  Aligned_cols=102  Identities=18%  Similarity=0.260  Sum_probs=65.5

Q ss_pred             CCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE---eccCCCCcceEEEccCCCEEEEEeC
Q 016318          178 FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV---LLRNLQFPNGLSLSKDKSFFVFCEG  254 (391)
Q Consensus       178 ~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~---~~~~~~~~ngia~~~d~~~l~v~et  254 (391)
                      -.|.+++.|...|.++.+.                 ++.|-.||-..-..+.   +..+......|.++|.|++|+++ |
T Consensus       174 evn~l~FHPre~ILiS~sr-----------------D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg-T  235 (430)
T KOG0640|consen  174 EVNDLDFHPRETILISGSR-----------------DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG-T  235 (430)
T ss_pred             cccceeecchhheEEeccC-----------------CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe-c
Confidence            4688999999999888754                 4556556643222222   22333445689999999999887 6


Q ss_pred             CCCeEEEEEeccccCccceeecc-cC-----CCCCceEeCCCCCEEEEEcCCCc
Q 016318          255 SVGRLHKYWLIGEKAGNLEAFAI-LP-----GYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       255 ~~~~I~~~~~~g~~~g~~~~~~~-~~-----g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      ....+..|++..     .+-|.. .|     +....+..++.|++||+......
T Consensus       236 dHp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~  284 (430)
T KOG0640|consen  236 DHPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA  284 (430)
T ss_pred             CCCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEeccCCc
Confidence            667777787643     333431 11     22334677899999998665433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=95.97  E-value=1.1  Score=40.13  Aligned_cols=183  Identities=11%  Similarity=0.121  Sum_probs=96.7

Q ss_pred             CccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCC-cccCCcceeecCC-CCEEEEeCCCcccchhheee
Q 016318          131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGV-PLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~-~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~  207 (391)
                      ...+.+++.. +|.-.++.+. +-+...+.+....   ....... .......++-++. ..++++.++           
T Consensus        21 ~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~---~~~~~~~gh~~svdql~w~~~~~d~~atas~-----------   85 (313)
T KOG1407|consen   21 QKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRF---RKELVYRGHTDSVDQLCWDPKHPDLFATASG-----------   85 (313)
T ss_pred             hcceEEEEcc-cCceeeecccCCceEEEEecchhh---hhhhcccCCCcchhhheeCCCCCcceEEecC-----------
Confidence            3345666665 4444343333 3344444443311   1111111 1124566777764 467777655           


Q ss_pred             ecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEe
Q 016318          208 VFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  287 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~  287 (391)
                            ...+..+|...++.......-..-.-++.+|+|+++.+.+ ...+|..++....+.-..+.   .+-....++.
T Consensus        86 ------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~-kdD~it~id~r~~~~~~~~~---~~~e~ne~~w  155 (313)
T KOG1407|consen   86 ------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN-KDDRITFIDARTYKIVNEEQ---FKFEVNEISW  155 (313)
T ss_pred             ------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-CcccEEEEEecccceeehhc---ccceeeeeee
Confidence                  3467778877666554444434555789999999887774 46788888754322111111   2223456777


Q ss_pred             CCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEE
Q 016318          288 NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQV  353 (391)
Q Consensus       288 d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~  353 (391)
                      .-++++++.+.+...+-   +..||.++.+ ..+          .+- ...-.-++|||+|+.+.+
T Consensus       156 ~~~nd~Fflt~GlG~v~---ILsypsLkpv-~si----------~AH-~snCicI~f~p~GryfA~  206 (313)
T KOG1407|consen  156 NNSNDLFFLTNGLGCVE---ILSYPSLKPV-QSI----------KAH-PSNCICIEFDPDGRYFAT  206 (313)
T ss_pred             cCCCCEEEEecCCceEE---EEeccccccc-ccc----------ccC-CcceEEEEECCCCceEee
Confidence            77778888777643321   2234433221 111          110 223456789999987643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.97  E-value=0.3  Score=43.76  Aligned_cols=107  Identities=16%  Similarity=0.155  Sum_probs=64.9

Q ss_pred             EecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCce
Q 016318          138 FDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       138 ~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      .|.+.|-+|.+.....++.+|+.+-. -.+.....|.-   ..+-++++ ++.+|++..+                  |+
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~---f~sP~i~~g~~sly~a~t~------------------G~  158 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGT---FVSPVIAPGDGSLYAAITA------------------GA  158 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccc-eEEecccCCce---eccceecCCCceEEEEecc------------------ce
Confidence            44445677888777779999987532 22222333332   22335666 8999999865                  89


Q ss_pred             EEEEeCCCCeEEEec----cC--CCCc----ceEEE-ccCCCEEEEEeCCCCeEEEEEeccc
Q 016318          217 VLKYDPTTKQTTVLL----RN--LQFP----NGLSL-SKDKSFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       217 l~~~d~~~~~~~~~~----~~--~~~~----ngia~-~~d~~~l~v~et~~~~I~~~~~~g~  267 (391)
                      +++.++++....++.    .+  +..|    ..+.+ .-||..+-+.+. +..|||+.-+|+
T Consensus       159 vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~s-G~qvwr~~t~Gp  219 (354)
T KOG4649|consen  159 VLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDES-GRQVWRPATKGP  219 (354)
T ss_pred             EEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCC-CcEEEeecCCCc
Confidence            999999887555542    11  1122    12222 237876666654 478999876664

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=95.95  E-value=0.49  Score=44.58  Aligned_cols=131  Identities=16%  Similarity=0.158  Sum_probs=80.8

Q ss_pred             CcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          143 GDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       143 g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      ++-.|.... .-++..++...+ +.+... .| .-...|.+.+.|||.+..+.+-                 +..|-.++
T Consensus       336 ~erlVSgsDd~tlflW~p~~~k-kpi~rm-tg-Hq~lVn~V~fSPd~r~IASaSF-----------------DkSVkLW~  395 (480)
T KOG0271|consen  336 GERLVSGSDDFTLFLWNPFKSK-KPITRM-TG-HQALVNHVSFSPDGRYIASASF-----------------DKSVKLWD  395 (480)
T ss_pred             cceeEEecCCceEEEecccccc-cchhhh-hc-hhhheeeEEECCCccEEEEeec-----------------ccceeeee
Confidence            344554444 447777775322 111111 11 1236899999999876555432                 34677788


Q ss_pred             CCCCeEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCce---EeCCCCCEEEEE
Q 016318          222 PTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV---RTNEKGEFWVAI  297 (391)
Q Consensus       222 ~~~~~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i---~~d~~G~lwva~  297 (391)
                      ..+|+...-.. ......-|+++.|.+ |+|+-+....|..+++..     .+...++||.-|.+   ..++||..-++.
T Consensus       396 g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~t-----kKl~~DLpGh~DEVf~vDwspDG~rV~sg  469 (480)
T KOG0271|consen  396 GRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRT-----KKLKQDLPGHADEVFAVDWSPDGQRVASG  469 (480)
T ss_pred             CCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeee-----eeecccCCCCCceEEEEEecCCCceeecC
Confidence            88887644333 445567799999998 888877767777776543     24455788877654   346888766554


Q ss_pred             cC
Q 016318          298 HC  299 (391)
Q Consensus       298 ~~  299 (391)
                      ..
T Consensus       470 gk  471 (480)
T KOG0271|consen  470 GK  471 (480)
T ss_pred             CC
Confidence            43

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.90  E-value=1.3  Score=44.54  Aligned_cols=140  Identities=15%  Similarity=0.105  Sum_probs=70.0

Q ss_pred             EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      +|++.....++.+|.++|+..=- ....      ..+++.++ +.+|+............-.........|+|+.+|..+
T Consensus       304 V~~g~~~G~l~ald~~tG~~~W~-~~~~------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t  375 (488)
T cd00216         304 IVHAPKNGFFYVLDRTTGKLISA-RPEV------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT  375 (488)
T ss_pred             EEEECCCceEEEEECCCCcEeeE-eEee------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence            66665444599999999863311 1110      12344444 7788854211000000000000122468899999998


Q ss_pred             CeEEEeccCCC--------Cc---ceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC----CCCceEeCC
Q 016318          225 KQTTVLLRNLQ--------FP---NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG----YPDNVRTNE  289 (391)
Q Consensus       225 ~~~~~~~~~~~--------~~---ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g----~p~~i~~d~  289 (391)
                      |+..--.+...        .+   ..+++  .++.||+.+ ..+.|+.++.+.   |+..--.++++    .|  +....
T Consensus       376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~-~dG~l~ald~~t---G~~lW~~~~~~~~~a~P--~~~~~  447 (488)
T cd00216         376 GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA-ADGYFRAFDATT---GKELWKFRTPSGIQATP--MTYEV  447 (488)
T ss_pred             CcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEEC-CCCeEEEEECCC---CceeeEEECCCCceEcC--EEEEe
Confidence            87532221110        11   12333  445588874 567898888543   32211112322    12  33455


Q ss_pred             CCCEEEEEcCC
Q 016318          290 KGEFWVAIHCR  300 (391)
Q Consensus       290 ~G~lwva~~~~  300 (391)
                      +|++||+...+
T Consensus       448 ~g~~yv~~~~g  458 (488)
T cd00216         448 NGKQYVGVMVG  458 (488)
T ss_pred             CCEEEEEEEec
Confidence            79999998765

The alignment model contains an 8-bladed beta-propeller.

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=1.4  Score=46.09  Aligned_cols=156  Identities=14%  Similarity=0.195  Sum_probs=96.2

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .--+++|.|.-=.+.++.+.|.|.-||-..-+.+.                    ......|-..|+.|++ .+-|+|+.
T Consensus        11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--------------------rFdeHdGpVRgv~FH~-~qplFVSG   69 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--------------------RFDEHDGPVRGVDFHP-TQPLFVSG   69 (1202)
T ss_pred             cccceecCCCCCEEEEeecCceeeeehhhhhhHHh--------------------hhhccCCccceeeecC-CCCeEEec
Confidence            34478898887767788899999988764111111                    1112246667999999 78999975


Q ss_pred             CC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          150 AY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       150 ~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      .. .-|-+++.++.+.  +.+.. | .+.+...+.+... .=||-+.|                .+-.|..||..+++..
T Consensus        70 GDDykIkVWnYk~rrc--lftL~-G-HlDYVRt~~FHhe-yPWIlSAS----------------DDQTIrIWNwqsr~~i  128 (1202)
T KOG0292|consen   70 GDDYKIKVWNYKTRRC--LFTLL-G-HLDYVRTVFFHHE-YPWILSAS----------------DDQTIRIWNWQSRKCI  128 (1202)
T ss_pred             CCccEEEEEeccccee--hhhhc-c-ccceeEEeeccCC-CceEEEcc----------------CCCeEEEEeccCCceE
Confidence            43 2355555554332  11110 1 1234444455433 44555443                2446667777777665


Q ss_pred             EeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecccc
Q 016318          229 VLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK  268 (391)
Q Consensus       229 ~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~  268 (391)
                      ....+ -.+.-..+|+|-++ +.|+.+-...|.+++++|-+
T Consensus       129 avltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLR  168 (1202)
T KOG0292|consen  129 AVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLR  168 (1202)
T ss_pred             EEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchh
Confidence            55443 34666778999888 77888888899999998853

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=95.87  E-value=1.4  Score=43.09  Aligned_cols=114  Identities=14%  Similarity=0.057  Sum_probs=71.6

Q ss_pred             cceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccC
Q 016318          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      .....+.+++..|+|+.....|-.+|......+.-. +.. ......+.+++.+|-++.|+..+                
T Consensus       468 iRSckL~pdgrtLivGGeastlsiWDLAapTprika-elt-ssapaCyALa~spDakvcFsccs----------------  529 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA-ELT-SSAPACYALAISPDAKVCFSCCS----------------  529 (705)
T ss_pred             eeeeEecCCCceEEeccccceeeeeeccCCCcchhh-hcC-CcchhhhhhhcCCccceeeeecc----------------
Confidence            334455664556888865555666665543222111 100 01124678899999999999755                


Q ss_pred             CCceEEEEeCCCCeE-EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          213 DTGRVLKYDPTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                       +|.|..||..+... +.+...-..+..|.+++||..||-. .-.+.+..+++..
T Consensus       530 -dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG-GlDntvRcWDlre  582 (705)
T KOG0639|consen  530 -DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG-GLDNTVRCWDLRE  582 (705)
T ss_pred             -CCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC-CCccceeehhhhh
Confidence             58899999876533 2333333456789999999988755 4567888888753

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=95.86  E-value=1.4  Score=40.35  Aligned_cols=148  Identities=16%  Similarity=0.157  Sum_probs=86.4

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCcc-ceEEEecCCCcEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P-~gi~~d~~~g~L~V~  148 (391)
                      +-.+|-+++.++.+.++++||.+..++.+.....                      .+-..+.| +..+|.. +...|++
T Consensus        15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------------------~~~~~~~plL~c~F~d-~~~~~~G   71 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------------------LKFKHGAPLLDCAFAD-ESTIVTG   71 (323)
T ss_pred             ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------------------hheecCCceeeeeccC-CceEEEe
Confidence            4567778877777999999999988876511100                      00011223 4667765 6789999


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      +....|.++|..++....+.+...+     ...|...+.-+..++.                 .-++++-.+|+....  
T Consensus        72 ~~dg~vr~~Dln~~~~~~igth~~~-----i~ci~~~~~~~~vIsg-----------------sWD~~ik~wD~R~~~--  127 (323)
T KOG1036|consen   72 GLDGQVRRYDLNTGNEDQIGTHDEG-----IRCIEYSYEVGCVISG-----------------SWDKTIKFWDPRNKV--  127 (323)
T ss_pred             ccCceEEEEEecCCcceeeccCCCc-----eEEEEeeccCCeEEEc-----------------ccCccEEEEeccccc--
Confidence            8887899999999876666554332     2233333322233332                 124677788876421  


Q ss_pred             EeccCCCCcceE-EEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          229 VLLRNLQFPNGL-SLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       229 ~~~~~~~~~ngi-a~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                       .......++-| +.+-.++.|.|+ +.+.++..|++..
T Consensus       128 -~~~~~d~~kkVy~~~v~g~~LvVg-~~~r~v~iyDLRn  164 (323)
T KOG1036|consen  128 -VVGTFDQGKKVYCMDVSGNRLVVG-TSDRKVLIYDLRN  164 (323)
T ss_pred             -cccccccCceEEEEeccCCEEEEe-ecCceEEEEEccc
Confidence             11112222222 344456657775 5667888888653

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.85  E-value=1.1  Score=43.52  Aligned_cols=171  Identities=11%  Similarity=0.068  Sum_probs=78.9

Q ss_pred             cCccceEEEecCCCcEEEEEC-------CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCccc--
Q 016318          130 CGRPLGLRFDKKTGDLYIADA-------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQ--  200 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~-------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~--  200 (391)
                      ..+|+-...-+ +|+++|..-       ..|++.+|.+|-++.-.... +.....+-+++-..+.-++-+|++=....  
T Consensus       129 ~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~-~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~  206 (461)
T PF05694_consen  129 LSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEK-DRGPQPFGYDFWYQPRHNVMISSEWGAPSMF  206 (461)
T ss_dssp             EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--S-B-TT------EEEETTTTEEEE-B---HHHH
T ss_pred             CCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceecc-CCCCCCCCCCeEEcCCCCEEEEeccCChhhc
Confidence            56788888888 788888632       12499999887555433322 12223567888888888888876311111  


Q ss_pred             -chhheeeecccCCCceEEEEeCCCCeEEEeccCC---CCcceEEE--ccCCCEEEEEeCCCCeEEEEEeccccCcccee
Q 016318          201 -RRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL---QFPNGLSL--SKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA  274 (391)
Q Consensus       201 -~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~---~~~ngia~--~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~  274 (391)
                       ......++..+.--.+|..||..+++..+..+-.   ..|--|.+  +|+..+=+|+-..+..||++..+.+..-..+.
T Consensus       207 ~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~k  286 (461)
T PF05694_consen  207 EKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEK  286 (461)
T ss_dssp             TT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEE
T ss_pred             ccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeE
Confidence             1111223333322347999999998877665332   23433443  45566566666667789998763221111111


Q ss_pred             e--------------------cccCCCCCceEeCCCCC-EEEEEcCCCc
Q 016318          275 F--------------------AILPGYPDNVRTNEKGE-FWVAIHCRRS  302 (391)
Q Consensus       275 ~--------------------~~~~g~p~~i~~d~~G~-lwva~~~~~~  302 (391)
                      .                    ...|+++..|.++-|.+ ||++......
T Consensus       287 Vi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd  335 (461)
T PF05694_consen  287 VIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGD  335 (461)
T ss_dssp             EEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTE
T ss_pred             EEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCc
Confidence            1                    11267788898988887 8898776443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=95.82  E-value=0.47  Score=44.68  Aligned_cols=151  Identities=15%  Similarity=0.181  Sum_probs=89.7

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      --++.|.|+|..+.+|+.|..+..||.+.-+..        ..|.+            .....+.++++| +|..++...
T Consensus       118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--------~t~Kg------------H~~WVlcvawsP-Dgk~iASG~  176 (480)
T KOG0271|consen  118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--------FTCKG------------HKNWVLCVAWSP-DGKKIASGS  176 (480)
T ss_pred             EEEEEecCCCceEEecCCCceEEeeccCCCCcc--------eeecC------------CccEEEEEEECC-Ccchhhccc
Confidence            346788999998999999998888887721111        11321            135578899999 666665555


Q ss_pred             CCC-eEEEeCCCCeeEEceeccCCCcccCCcceee-----cCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          151 YFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDI-----DDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       151 ~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~-----d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      ..| |..+||++|+.  +.....|. -....+++.     ++..+...+. +                .+|.+..+|...
T Consensus       177 ~dg~I~lwdpktg~~--~g~~l~gH-~K~It~Lawep~hl~p~~r~las~-s----------------kDg~vrIWd~~~  236 (480)
T KOG0271|consen  177 KDGSIRLWDPKTGQQ--IGRALRGH-KKWITALAWEPLHLVPPCRRLASS-S----------------KDGSVRIWDTKL  236 (480)
T ss_pred             cCCeEEEecCCCCCc--ccccccCc-ccceeEEeecccccCCCccceecc-c----------------CCCCEEEEEccC
Confidence            555 99999998842  22222221 134555554     3344533333 2                367888888877


Q ss_pred             CeEEEeccCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318          225 KQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  264 (391)
Q Consensus       225 ~~~~~~~~~~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~  264 (391)
                      ++......+- .....|...-+|  +..+.+...+|..+..
T Consensus       237 ~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a  275 (480)
T KOG0271|consen  237 GTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRA  275 (480)
T ss_pred             ceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEc
Confidence            6655544433 233456665444  4445455666666653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=95.81  E-value=0.71  Score=44.46  Aligned_cols=152  Identities=14%  Similarity=0.152  Sum_probs=83.2

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF  152 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~  152 (391)
                      +++-++.|..+..|+..|.|+.|....-..+....                    ..--....+.|.. +|.++|.....
T Consensus        86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~--------------------aHYQ~ITcL~fs~-dgs~iiTgskD  144 (476)
T KOG0646|consen   86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS--------------------AHYQSITCLKFSD-DGSHIITGSKD  144 (476)
T ss_pred             eeecCCCceEEEeecccCcEEEEEeccccHHHHHH--------------------hhccceeEEEEeC-CCcEEEecCCC
Confidence            56677889977778789999999765111100000                    0011134677876 78888876665


Q ss_pred             C-eEEEeCC-------CCeeEEceeccCCCcccCCcceeecCCC---CEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          153 G-LMKVGPE-------GGLATSLATEAEGVPLRFTNDLDIDDEG---NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       153 g-l~~~d~~-------~g~~~~~~~~~~~~~~~~~~~l~~d~~G---~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      | ++.+...       +...+.+.. ..+ .-....++.++.-|   ++|-+.                  .+..+-.||
T Consensus       145 g~V~vW~l~~lv~a~~~~~~~p~~~-f~~-HtlsITDl~ig~Gg~~~rl~TaS------------------~D~t~k~wd  204 (476)
T KOG0646|consen  145 GAVLVWLLTDLVSADNDHSVKPLHI-FSD-HTLSITDLQIGSGGTNARLYTAS------------------EDRTIKLWD  204 (476)
T ss_pred             ccEEEEEEEeecccccCCCccceee-ecc-CcceeEEEEecCCCccceEEEec------------------CCceEEEEE
Confidence            5 4444321       111111100 000 01234455554432   333322                  134566788


Q ss_pred             CCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          222 PTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       222 ~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ...+.+-.-..-...++.++++|-++.+|+. +..+.|+...+.+
T Consensus       205 lS~g~LLlti~fp~si~av~lDpae~~~yiG-t~~G~I~~~~~~~  248 (476)
T KOG0646|consen  205 LSLGVLLLTITFPSSIKAVALDPAERVVYIG-TEEGKIFQNLLFK  248 (476)
T ss_pred             eccceeeEEEecCCcceeEEEcccccEEEec-CCcceEEeeehhc
Confidence            7777543322223356789999999988887 6678999887654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.80  E-value=0.87  Score=43.64  Aligned_cols=146  Identities=13%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             eEEEecCCCc-EEEEECCC-----CeEEEeCCCCeeEEceeccCCCcccCCcceeec-CCC--CEEEEeCCCcccchhhe
Q 016318          135 GLRFDKKTGD-LYIADAYF-----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEG--NVYFTDSSTNYQRRNFM  205 (391)
Q Consensus       135 gi~~d~~~g~-L~V~d~~~-----gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d-~~G--~ly~td~~~~~~~~~~~  205 (391)
                      .+.+.+ +++ +++.-..+     -++.+|..++..+.+.......-+.....+.+- ++|  -+|++. .         
T Consensus       188 ~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~---------  256 (353)
T PF00930_consen  188 RVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-R---------  256 (353)
T ss_dssp             EEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-T---------
T ss_pred             cceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-c---------
Confidence            455656 455 77654332     178889888877766544333323333444443 433  355554 2         


Q ss_pred             eeecccCCCceEEEEeCCCCeEEEeccCCCCcc-eEEEccCCCEEEEEeCC----CCeEEEEEec-cccCccceeecccC
Q 016318          206 QLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPN-GLSLSKDKSFFVFCEGS----VGRLHKYWLI-GEKAGNLEAFAILP  279 (391)
Q Consensus       206 ~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~n-gia~~~d~~~l~v~et~----~~~I~~~~~~-g~~~g~~~~~~~~~  279 (391)
                            .+-..|+.++.+++..+.+..+-...+ -+.++++++.||+..+.    ...|++++++ +   +..+.+....
T Consensus       257 ------~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~  327 (353)
T PF00930_consen  257 ------DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCED  327 (353)
T ss_dssp             ------TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTS
T ss_pred             ------CCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCC
Confidence                  234589999999988887766654443 36788999999988775    3579999887 4   3344443322


Q ss_pred             CCCCceEeCCCCCEEEEEcCC
Q 016318          280 GYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       280 g~p~~i~~d~~G~lwva~~~~  300 (391)
                      +.-..+.++++|++++-..++
T Consensus       328 ~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  328 GDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             STTEEEEE-TTSSEEEEEEES
T ss_pred             CCceEEEECCCCCEEEEEEcC
Confidence            211378999999988876654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PTZ00420 coronin; Provisional

Probab=95.77  E-value=2.7  Score=42.92  Aligned_cols=118  Identities=8%  Similarity=-0.044  Sum_probs=69.4

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCCCe--eEEce---eccCCCcccCCcceeecCCCCEE-EEeCCCcccch
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGL--ATSLA---TEAEGVPLRFTNDLDIDDEGNVY-FTDSSTNYQRR  202 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~--~~~~~---~~~~~~~~~~~~~l~~d~~G~ly-~td~~~~~~~~  202 (391)
                      .+....+++++.+++++++....| |..+|..++.  ...+.   ....+ .....+.+++.+++... ++.+.      
T Consensus        74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS~------  146 (568)
T PTZ00420         74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSGF------  146 (568)
T ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEeC------
Confidence            355678999884355555444444 7777765431  11110   01111 12356788999988644 34322      


Q ss_pred             hheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          203 NFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       203 ~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                                 ++.|..||..+++.............++++++|+.+ ++....+.|..+++..
T Consensus       147 -----------DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lL-at~s~D~~IrIwD~Rs  198 (568)
T PTZ00420        147 -----------DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLL-SGTCVGKHMHIIDPRK  198 (568)
T ss_pred             -----------CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEE-EEEecCCEEEEEECCC
Confidence                       578888998877643322222346789999999954 5445566788887653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.72  E-value=1.5  Score=40.90  Aligned_cols=111  Identities=14%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             cCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcc--cCCcceeecCCCCEEEEeCCCcccchhheee
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPL--RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~--~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~  207 (391)
                      ..|...|.|++ +++||+.. ..|.+++.......+...........  ...-+++..+++.+|++..+           
T Consensus       186 ~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-----------  252 (302)
T PF14870_consen  186 SRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-----------  252 (302)
T ss_dssp             SS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-----------
T ss_pred             cceehhceecC-CCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-----------
Confidence            35667899998 79999987 45566665433344444332211111  12356678888999998754           


Q ss_pred             ecccCCCceEEEEeCCCCeEEEeccCCCC---cceEEEccCCCEEEEEeCCCCeEEEE
Q 016318          208 VFSAEDTGRVLKYDPTTKQTTVLLRNLQF---PNGLSLSKDKSFFVFCEGSVGRLHKY  262 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~---~ngia~~~d~~~l~v~et~~~~I~~~  262 (391)
                             |.|++-.-..+..+........   ..-|.+..+++-..+.  .++-|.||
T Consensus       253 -------G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG--~~G~ll~~  301 (302)
T PF14870_consen  253 -------GTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG--QDGVLLRY  301 (302)
T ss_dssp             -------T-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE---STTEEEEE
T ss_pred             -------ccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC--CCcEEEEe
Confidence                   6666655444455554332222   2345554444423333  35567776

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=95.69  E-value=1.1  Score=40.01  Aligned_cols=100  Identities=12%  Similarity=0.127  Sum_probs=64.1

Q ss_pred             CccceEEEecCCCcEEEEECCCCeEEEeCCC-CeeEEceeccCCCcccCCcce---eecCCCCEEEEeCCCcccchhhee
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEG-GLATSLATEAEGVPLRFTNDL---DIDDEGNVYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~-g~~~~~~~~~~~~~~~~~~~l---~~d~~G~ly~td~~~~~~~~~~~~  206 (391)
                      ..+..+.++. +|++.....+.+|--.|+++ +.++.+         .-|..+   ...|+-.+|++...          
T Consensus       185 s~VtSlEvs~-dG~ilTia~gssV~Fwdaksf~~lKs~---------k~P~nV~SASL~P~k~~fVaGge----------  244 (334)
T KOG0278|consen  185 SPVTSLEVSQ-DGRILTIAYGSSVKFWDAKSFGLLKSY---------KMPCNVESASLHPKKEFFVAGGE----------  244 (334)
T ss_pred             CCCcceeecc-CCCEEEEecCceeEEeccccccceeec---------cCccccccccccCCCceEEecCc----------
Confidence            3456778887 67776665566687777764 222222         123333   34567788888632          


Q ss_pred             eecccCCCceEEEEeCCCCeEEEe-ccCC-CCcceEEEccCCCEEEEEeCCCCe
Q 016318          207 LVFSAEDTGRVLKYDPTTKQTTVL-LRNL-QFPNGLSLSKDKSFFVFCEGSVGR  258 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~~~~~~~-~~~~-~~~ngia~~~d~~~l~v~et~~~~  258 (391)
                             +..+++||-.|++-... ..+- .....+.++|||. +|.+.+..+.
T Consensus       245 -------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGT  290 (334)
T KOG0278|consen  245 -------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGT  290 (334)
T ss_pred             -------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCce
Confidence                   56899999988865554 2333 3446899999999 8877655543

>PRK13684 Ycf48-like protein; Provisional

Probab=95.66  E-value=2.1  Score=40.76  Aligned_cols=140  Identities=14%  Similarity=0.085  Sum_probs=71.7

Q ss_pred             ccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318          132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       132 ~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      .+..+.... ++.+|++.....|++-+-.+...+.+....    ....++++.+++|.+++...                
T Consensus       133 ~~~~i~~~~-~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~----~g~~~~i~~~~~g~~v~~g~----------------  191 (334)
T PRK13684        133 SPYLITALG-PGTAEMATNVGAIYRTTDGGKNWEALVEDA----AGVVRNLRRSPDGKYVAVSS----------------  191 (334)
T ss_pred             CceEEEEEC-CCcceeeeccceEEEECCCCCCceeCcCCC----cceEEEEEECCCCeEEEEeC----------------
Confidence            455555443 456777755555777665555555543322    22467788888877666553                


Q ss_pred             CCCceEEEEeCCCC-eEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC-----CCCc
Q 016318          212 EDTGRVLKYDPTTK-QTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-----YPDN  284 (391)
Q Consensus       212 ~~~g~l~~~d~~~~-~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g-----~p~~  284 (391)
                        .|.+++-....+ ........ ....+++++.++++ +|+... .+.+.+-.-++..  +.+.. ..|.     ...+
T Consensus       192 --~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~-~G~~~~~s~d~G~--sW~~~-~~~~~~~~~~l~~  264 (334)
T PRK13684        192 --RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLAR-GGQIRFNDPDDLE--SWSKP-IIPEITNGYGYLD  264 (334)
T ss_pred             --CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEec-CCEEEEccCCCCC--ccccc-cCCccccccceee
Confidence              256666422223 34443322 24567888888888 444432 2333221222211  11111 1111     1234


Q ss_pred             eEeCCCCCEEEEEcC
Q 016318          285 VRTNEKGEFWVAIHC  299 (391)
Q Consensus       285 i~~d~~G~lwva~~~  299 (391)
                      +.+.+++.+|++...
T Consensus       265 v~~~~~~~~~~~G~~  279 (334)
T PRK13684        265 LAYRTPGEIWAGGGN  279 (334)
T ss_pred             EEEcCCCCEEEEcCC
Confidence            666777888876543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=95.59  E-value=0.38  Score=46.83  Aligned_cols=146  Identities=10%  Similarity=0.073  Sum_probs=83.2

Q ss_pred             ccCccCccc--eEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccc
Q 016318          126 NEHICGRPL--GLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQR  201 (391)
Q Consensus       126 ~~~~~g~P~--gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~  201 (391)
                      .|.++..|.  .+++++ +-++.++... ..|.++|....   .++..+.|. -.....|++.+|| +||-..       
T Consensus       503 aeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq---~~VrqfqGh-tDGascIdis~dGtklWTGG-------  570 (705)
T KOG0639|consen  503 AELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGH-TDGASCIDISKDGTKLWTGG-------  570 (705)
T ss_pred             hhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccc---eeeecccCC-CCCceeEEecCCCceeecCC-------
Confidence            334454444  566677 4555554444 44888887642   222333332 1235678888899 566553       


Q ss_pred             hhheeeecccCCCceEEEEeCCCCeEEEec-cCCC-CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC
Q 016318          202 RNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP  279 (391)
Q Consensus       202 ~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~-~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~  279 (391)
                                 .++.|-+||...+.  .+. .++. ..-.+-..|.++||.|. ..++.++.....++.+.+...   ..
T Consensus       571 -----------lDntvRcWDlregr--qlqqhdF~SQIfSLg~cP~~dWlavG-Mens~vevlh~skp~kyqlhl---he  633 (705)
T KOG0639|consen  571 -----------LDNTVRCWDLREGR--QLQQHDFSSQIFSLGYCPTGDWLAVG-MENSNVEVLHTSKPEKYQLHL---HE  633 (705)
T ss_pred             -----------Cccceeehhhhhhh--hhhhhhhhhhheecccCCCccceeee-cccCcEEEEecCCccceeecc---cc
Confidence                       24678889876543  221 1221 12234456899988887 567788888766653222110   01


Q ss_pred             CCCCceEeCCCCCEEEEEcCC
Q 016318          280 GYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       280 g~p~~i~~d~~G~lwva~~~~  300 (391)
                      .-.-++.+..-|..||++...
T Consensus       634 ScVLSlKFa~cGkwfvStGkD  654 (705)
T KOG0639|consen  634 SCVLSLKFAYCGKWFVSTGKD  654 (705)
T ss_pred             cEEEEEEecccCceeeecCch
Confidence            112356788999999987654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=95.59  E-value=0.18  Score=46.20  Aligned_cols=153  Identities=15%  Similarity=0.164  Sum_probs=87.8

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EEEEEC
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADA  150 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~V~d~  150 (391)
                      ..+.|.|...++..++.|+.|-.+|-.+      .+..            +.+.....+--...|.|+| .|+ |.|+..
T Consensus       176 n~l~FHPre~ILiS~srD~tvKlFDfsK------~saK------------rA~K~~qd~~~vrsiSfHP-sGefllvgTd  236 (430)
T KOG0640|consen  176 NDLDFHPRETILISGSRDNTVKLFDFSK------TSAK------------RAFKVFQDTEPVRSISFHP-SGEFLLVGTD  236 (430)
T ss_pred             cceeecchhheEEeccCCCeEEEEeccc------HHHH------------HHHHHhhccceeeeEeecC-CCceEEEecC
Confidence            4567788888788888888777665431      0000            0001111133346889999 555 666654


Q ss_pred             CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe
Q 016318          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL  230 (391)
Q Consensus       151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  230 (391)
                      ..-+..+|..|-+.-.-..+ +.+.-...+.+-..+.|++|+|.+.                 +|.+-.||.-+++...-
T Consensus       237 Hp~~rlYdv~T~QcfvsanP-d~qht~ai~~V~Ys~t~~lYvTaSk-----------------DG~IklwDGVS~rCv~t  298 (430)
T KOG0640|consen  237 HPTLRLYDVNTYQCFVSANP-DDQHTGAITQVRYSSTGSLYVTASK-----------------DGAIKLWDGVSNRCVRT  298 (430)
T ss_pred             CCceeEEeccceeEeeecCc-ccccccceeEEEecCCccEEEEecc-----------------CCcEEeeccccHHHHHH
Confidence            44466677766433222221 1222335677778889999999865                 57777788655543221


Q ss_pred             ---ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          231 ---LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       231 ---~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                         ..+........|+.++++++-  ++...+.++|
T Consensus       299 ~~~AH~gsevcSa~Ftkn~kyiLs--SG~DS~vkLW  332 (430)
T KOG0640|consen  299 IGNAHGGSEVCSAVFTKNGKYILS--SGKDSTVKLW  332 (430)
T ss_pred             HHhhcCCceeeeEEEccCCeEEee--cCCcceeeee
Confidence               123334455668889985542  4455555555

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.36  E-value=0.96  Score=46.49  Aligned_cols=187  Identities=10%  Similarity=0.060  Sum_probs=108.3

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      +|....++ .|.+++.|..+--|.+.   -...|.+                        .....+++|.|-+++.++..
T Consensus       374 DlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~H------------------------ndfVTcVaFnPvDDryFiSG  428 (712)
T KOG0283|consen  374 DLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSH------------------------NDFVTCVAFNPVDDRYFISG  428 (712)
T ss_pred             ecccccCC-eeEeccccccEEeecCCCcceeeEEec------------------------CCeeEEEEecccCCCcEeec
Confidence            45555444 48888888877777665   2333322                        34567899999778888876


Q ss_pred             CCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          150 AYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       150 ~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      .-.| +-.++....++..... ..    ..+..++..|||..-|..+-                 +|....|+..+.+..
T Consensus       429 SLD~KvRiWsI~d~~Vv~W~D-l~----~lITAvcy~PdGk~avIGt~-----------------~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  429 SLDGKVRLWSISDKKVVDWND-LR----DLITAVCYSPDGKGAVIGTF-----------------NGYCRFYDTEGLKLV  486 (712)
T ss_pred             ccccceEEeecCcCeeEeehh-hh----hhheeEEeccCCceEEEEEe-----------------ccEEEEEEccCCeEE
Confidence            5544 5555555444443322 11    25677889999976665533                 477888888766554


Q ss_pred             Eec----c-----CCCCcceEEEccCC-CEEEEEeCCCCeEEEEEecccc-CccceeecccCCCCCceEeCCCCCEEEEE
Q 016318          229 VLL----R-----NLQFPNGLSLSKDK-SFFVFCEGSVGRLHKYWLIGEK-AGNLEAFAILPGYPDNVRTNEKGEFWVAI  297 (391)
Q Consensus       229 ~~~----~-----~~~~~ngia~~~d~-~~l~v~et~~~~I~~~~~~g~~-~g~~~~~~~~~g~p~~i~~d~~G~lwva~  297 (391)
                      .-.    .     ......|+++.|.. +.|+|+ +...||..|+..... .-+++-|.+.. ..-.-.++.+|+..|..
T Consensus       487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~~~lv~KfKG~~n~~-SQ~~Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRDKDLVHKFKGFRNTS-SQISASFSSDGKHIVSA  564 (712)
T ss_pred             EeeeEeeccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEeccchhhhhhhcccccCC-cceeeeEccCCCEEEEe
Confidence            321    1     01246788877532 347787 677899999853210 01111121111 11123455677777766


Q ss_pred             cCCCchhhhhh
Q 016318          298 HCRRSLYSHLM  308 (391)
Q Consensus       298 ~~~~~~~~~~l  308 (391)
                      .....++.|-+
T Consensus       565 seDs~VYiW~~  575 (712)
T KOG0283|consen  565 SEDSWVYIWKN  575 (712)
T ss_pred             ecCceEEEEeC
Confidence            66666666544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.36  E-value=0.24  Score=47.35  Aligned_cols=104  Identities=16%  Similarity=0.117  Sum_probs=55.0

Q ss_pred             cCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCC-cceEEEccCCCEEEEEeC
Q 016318          177 RFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQF-PNGLSLSKDKSFFVFCEG  254 (391)
Q Consensus       177 ~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~-~ngia~~~d~~~l~v~et  254 (391)
                      .+.+.=++.++| .|.|+...               .+...++.+|.++++.+++.++-.. ..|..++++.+.+|... 
T Consensus        36 ~YF~~~~ft~dG~kllF~s~~---------------dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-   99 (386)
T PF14583_consen   36 LYFYQNCFTDDGRKLLFASDF---------------DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-   99 (386)
T ss_dssp             --TTS--B-TTS-EEEEEE-T---------------TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-
T ss_pred             eeecCCCcCCCCCEEEEEecc---------------CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-
Confidence            345555667788 46665421               2345799999999999999876432 33778888888876543 


Q ss_pred             CCCeEEEEEeccccCccceeecccC-CCC--CceEeCCCCCEEEEEcC
Q 016318          255 SVGRLHKYWLIGEKAGNLEAFAILP-GYP--DNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       255 ~~~~I~~~~~~g~~~g~~~~~~~~~-g~p--~~i~~d~~G~lwva~~~  299 (391)
                      .+.+|++++++..   +.+.+...| ++-  .....+++++.+++...
T Consensus       100 ~~~~l~~vdL~T~---e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~  144 (386)
T PF14583_consen  100 NGRSLRRVDLDTL---EERVVYEVPDDWKGYGTWVANSDCTKLVGIEI  144 (386)
T ss_dssp             TTTEEEEEETTT-----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEE
T ss_pred             CCCeEEEEECCcC---cEEEEEECCcccccccceeeCCCccEEEEEEE
Confidence            3468999998763   223333333 211  22345778888877543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=95.35  E-value=3  Score=40.53  Aligned_cols=145  Identities=17%  Similarity=0.186  Sum_probs=82.7

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ..-.+++...+|+.|.+|..+|.+..|+.+  ...++..                       ..+-...+...+ .|+.+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~-----------------------HkgPI~slKWnk-~G~yi  291 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQ-----------------------HKGPIFSLKWNK-KGTYI  291 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhc-----------------------cCCceEEEEEcC-CCCEE
Confidence            345678898999999999999988888765  2222211                       123345777876 56544


Q ss_pred             EEEC-CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC-C
Q 016318          147 IADA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT-T  224 (391)
Q Consensus       147 V~d~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~  224 (391)
                      ++.. .+-+..+|..+|+++.......      .-+++++-.++-=|+.++                .+|.++.|... +
T Consensus       292 lS~~vD~ttilwd~~~g~~~q~f~~~s------~~~lDVdW~~~~~F~ts~----------------td~~i~V~kv~~~  349 (524)
T KOG0273|consen  292 LSGGVDGTTILWDAHTGTVKQQFEFHS------APALDVDWQSNDEFATSS----------------TDGCIHVCKVGED  349 (524)
T ss_pred             EeccCCccEEEEeccCceEEEeeeecc------CCccceEEecCceEeecC----------------CCceEEEEEecCC
Confidence            4433 3448888988887765433221      113445443332233332                24555444322 1


Q ss_pred             CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEE
Q 016318          225 KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLH  260 (391)
Q Consensus       225 ~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~  260 (391)
                      .-+..+...-...|++-++|.+. |+.+-+....+.
T Consensus       350 ~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~Tlk  384 (524)
T KOG0273|consen  350 RPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLK  384 (524)
T ss_pred             CcceeeecccCceEEEEECCCCc-eEEEecCCCeeE
Confidence            22334444445678899999998 555544444433

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.16  E-value=2.1  Score=40.26  Aligned_cols=113  Identities=19%  Similarity=0.252  Sum_probs=67.0

Q ss_pred             ccceE-EEecCCCcEEEEE---CCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhhee
Q 016318          132 RPLGL-RFDKKTGDLYIAD---AYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       132 ~P~gi-~~d~~~g~L~V~d---~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~  206 (391)
                      .|.|+ ++++...+-|++=   ...| |+.+|..+=+.......+.+    ..-.++++++|++..|.+-          
T Consensus       128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~----~lAalafs~~G~llATASe----------  193 (391)
T KOG2110|consen  128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG----PLAALAFSPDGTLLATASE----------  193 (391)
T ss_pred             CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC----ceeEEEECCCCCEEEEecc----------
Confidence            35543 3444344455542   2234 77787664321111112222    3567899999999888754          


Q ss_pred             eecccCCCceEEE-EeCCCC-eEEEeccCCC--CcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          207 LVFSAEDTGRVLK-YDPTTK-QTTVLLRNLQ--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       207 ~~~~~~~~g~l~~-~d~~~~-~~~~~~~~~~--~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                             .|+|+| |...+| ++..+..+..  ....++|++|+++|.++ +.+..|+.|.++.
T Consensus       194 -------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s-S~TeTVHiFKL~~  249 (391)
T KOG2110|consen  194 -------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS-SNTETVHIFKLEK  249 (391)
T ss_pred             -------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe-cCCCeEEEEEecc
Confidence                   477776 444444 4555555554  23478999999976655 6677888887764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=95.11  E-value=2.7  Score=40.63  Aligned_cols=140  Identities=14%  Similarity=0.130  Sum_probs=78.1

Q ss_pred             cceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318          133 PLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      ..+++-++ .|...++..-.| ||.+...+|..-.+...    .......+.+..||.++||.+.               
T Consensus        84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~a----HYQ~ITcL~fs~dgs~iiTgsk---------------  143 (476)
T KOG0646|consen   84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSA----HYQSITCLKFSDDGSHIITGSK---------------  143 (476)
T ss_pred             eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHh----hccceeEEEEeCCCcEEEecCC---------------
Confidence            35667676 677777764444 88888888854322211    1234566788889999898754               


Q ss_pred             CCCceEEEEeCCC-------CeE---EEeccCCCCcceEEEccC--CCEEEEEeCCCCeEEEEEeccccCccceeec--c
Q 016318          212 EDTGRVLKYDPTT-------KQT---TVLLRNLQFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--I  277 (391)
Q Consensus       212 ~~~g~l~~~d~~~-------~~~---~~~~~~~~~~ngia~~~d--~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~--~  277 (391)
                        +|.|+.|...+       +.+   ..+.+.-.....+.+++-  ...||-+ +..+.+..+++...     ..+.  .
T Consensus       144 --Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k~wdlS~g-----~LLlti~  215 (476)
T KOG0646|consen  144 --DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIKLWDLSLG-----VLLLTIT  215 (476)
T ss_pred             --CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe-cCCceEEEEEeccc-----eeeEEEe
Confidence              56777665311       111   111111011122333322  1225433 55667777777653     2222  3


Q ss_pred             cCCCCCceEeCCCCC-EEEEEcCC
Q 016318          278 LPGYPDNVRTNEKGE-FWVAIHCR  300 (391)
Q Consensus       278 ~~g~p~~i~~d~~G~-lwva~~~~  300 (391)
                      +|..+..+++|+.++ +|+++..+
T Consensus       216 fp~si~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  216 FPSSIKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             cCCcceeEEEcccccEEEecCCcc
Confidence            566678899998877 88876553

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.00  E-value=3.1  Score=38.87  Aligned_cols=141  Identities=17%  Similarity=0.227  Sum_probs=69.2

Q ss_pred             CccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecc
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~  210 (391)
                      +.|.++.... ++..+++.....|++-.-.+...+.+.....    ...+++...+||++....+.              
T Consensus       104 gs~~~i~~l~-~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~----gs~~~~~r~~dG~~vavs~~--------------  164 (302)
T PF14870_consen  104 GSPFGITALG-DGSAELAGDRGAIYRTTDGGKTWQAVVSETS----GSINDITRSSDGRYVAVSSR--------------  164 (302)
T ss_dssp             S-EEEEEEEE-TTEEEEEETT--EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETT--------------
T ss_pred             CCeeEEEEcC-CCcEEEEcCCCcEEEeCCCCCCeeEcccCCc----ceeEeEEECCCCcEEEEECc--------------
Confidence            5567776655 5677777655557777655555665543322    24566777788875544432              


Q ss_pred             cCCCceEEE-EeCCCCeEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cC----CC-
Q 016318          211 AEDTGRVLK-YDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LP----GY-  281 (391)
Q Consensus       211 ~~~~g~l~~-~d~~~~~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~----g~-  281 (391)
                          |.++. .|+-......... ....-..+.+++|+. ||+.. .++.|.+-+..    ...+.+..  .|    ++ 
T Consensus       165 ----G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~----~~~~~w~~~~~~~~~~~~~  234 (302)
T PF14870_consen  165 ----GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDP----DDGETWSEPIIPIKTNGYG  234 (302)
T ss_dssp             ----SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-T----TEEEEE---B-TTSS--S-
T ss_pred             ----ccEEEEecCCCccceEEccCccceehhceecCCCC-EEEEe-CCcEEEEccCC----CCccccccccCCcccCcee
Confidence                55553 4553333444332 234556788999988 88774 55666666511    11233321  11    11 


Q ss_pred             CCceEeCCCCCEEEEEcCC
Q 016318          282 PDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       282 p~~i~~d~~G~lwva~~~~  300 (391)
                      .-+++..+++.+|++..++
T Consensus       235 ~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  235 ILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             EEEEEESSSS-EEEEESTT
T ss_pred             eEEEEecCCCCEEEEeCCc
Confidence            1235677778888876554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.99  E-value=0.69  Score=43.33  Aligned_cols=189  Identities=13%  Similarity=0.105  Sum_probs=103.6

Q ss_pred             ccccCcceEEEccCC-CeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           66 NQIQGPESMAFDPLG-RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G-~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      |--.|-.++|-+|+- ..+.+|+.||.|..|+..+-..+..                    .+...|-..||+++. +..
T Consensus        64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~--------------------f~AH~G~V~Gi~v~~-~~~  122 (433)
T KOG0268|consen   64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT--------------------FKAHEGLVRGICVTQ-TSF  122 (433)
T ss_pred             ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe--------------------eecccCceeeEEecc-cce
Confidence            444577888888765 4578999999999998862111111                    111235678999987 667


Q ss_pred             EEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 LYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      ++++|.. -..++++..  -++.+...      ....+|.-...++++.|- +                  ..+-.||..
T Consensus       123 ~tvgdDKtvK~wk~~~~--p~~tilg~------s~~~gIdh~~~~~~FaTc-G------------------e~i~IWD~~  175 (433)
T KOG0268|consen  123 FTVGDDKTVKQWKIDGP--PLHTILGK------SVYLGIDHHRKNSVFATC-G------------------EQIDIWDEQ  175 (433)
T ss_pred             EEecCCcceeeeeccCC--cceeeecc------cccccccccccccccccc-C------------------ceeeecccc
Confidence            7887633 124444432  22222110      122333333344444443 1                  124445542


Q ss_pred             CCe-EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          224 TKQ-TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       224 ~~~-~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      ... +..+.-+......+.++|-+..|+.+-...+.|..|++..... -.++..+  --++.|+.++++..+++.....+
T Consensus       176 R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P-l~KVi~~--mRTN~IswnPeafnF~~a~ED~n  252 (433)
T KOG0268|consen  176 RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP-LKKVILT--MRTNTICWNPEAFNFVAANEDHN  252 (433)
T ss_pred             cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc-cceeeee--ccccceecCccccceeecccccc
Confidence            111 1111112222346778888887777766778899998754311 1122222  23678999998888888777665


Q ss_pred             hhh
Q 016318          303 LYS  305 (391)
Q Consensus       303 ~~~  305 (391)
                      .+.
T Consensus       253 lY~  255 (433)
T KOG0268|consen  253 LYT  255 (433)
T ss_pred             cee
Confidence            544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=94.90  E-value=2.6  Score=41.19  Aligned_cols=86  Identities=15%  Similarity=0.137  Sum_probs=55.2

Q ss_pred             CceEEEEeCCCCeEEEeccC--CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCC
Q 016318          214 TGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG  291 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~~~--~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G  291 (391)
                      +|.|-.||..+.....-...  -....||+++|-+..|+|+-....+|..|+.... +.......+.|  -..+++.++|
T Consensus       186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l~y~~P--lstvaf~~~G  262 (673)
T KOG4378|consen  186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRLTYSHP--LSTVAFSECG  262 (673)
T ss_pred             CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cccceeeecCC--cceeeecCCc
Confidence            57888888765433222222  2245699999998889998888889999986532 22222222222  2458889999


Q ss_pred             CEEEEEcCCCc
Q 016318          292 EFWVAIHCRRS  302 (391)
Q Consensus       292 ~lwva~~~~~~  302 (391)
                      .++++......
T Consensus       263 ~~L~aG~s~G~  273 (673)
T KOG4378|consen  263 TYLCAGNSKGE  273 (673)
T ss_pred             eEEEeecCCce
Confidence            88877665443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.76  E-value=3.3  Score=38.02  Aligned_cols=81  Identities=14%  Similarity=0.192  Sum_probs=54.1

Q ss_pred             ceEEEcc-CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           72 ESMAFDP-LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        72 e~i~~d~-~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      .+++|+| ..+++-++++||.|..|+-..-..+...                  ......+-++.+++..++..++.++.
T Consensus        31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------------------a~~~~~~PvL~v~WsddgskVf~g~~   92 (347)
T KOG0647|consen   31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------------------AQQSHDGPVLDVCWSDDGSKVFSGGC   92 (347)
T ss_pred             heeEeccccCceEEecccCCceEEEEEecCCcccch------------------hhhccCCCeEEEEEccCCceEEeecc
Confidence            4667777 4555568999998888865410001000                  12223466789999875556788888


Q ss_pred             CCCeEEEeCCCCeeEEceec
Q 016318          151 YFGLMKVGPEGGLATSLATE  170 (391)
Q Consensus       151 ~~gl~~~d~~~g~~~~~~~~  170 (391)
                      .+.+-.+|..+++...+..+
T Consensus        93 Dk~~k~wDL~S~Q~~~v~~H  112 (347)
T KOG0647|consen   93 DKQAKLWDLASGQVSQVAAH  112 (347)
T ss_pred             CCceEEEEccCCCeeeeeec
Confidence            88899999999988877654

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=94.71  E-value=1.2  Score=39.54  Aligned_cols=184  Identities=16%  Similarity=0.031  Sum_probs=84.2

Q ss_pred             CceeeeecCCCCCCCCCCCccchhccccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCC
Q 016318           33 DFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNR  110 (391)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~  110 (391)
                      |++-...++|....       .+-+..+..+..| ..+=..|+..|+|. +|.-..+ .+++..+.  ...... .... 
T Consensus         6 d~~~~~~~~p~~~~-------~n~~~~a~~iG~g-w~~~~~i~~~P~g~-lY~I~~~-~lY~~~~~~~~~~~~~-~~~~-   73 (229)
T PF14517_consen    6 DGTLRKGPPPQDGG-------DNWSDRAITIGSG-WNNFRDIAAGPNGR-LYAIRND-GLYRGSPSSSGGNTWD-SGSK-   73 (229)
T ss_dssp             T-EEEEES---STT---------HHHHSEEEESS--TT-SEEEE-TTS--EEEEETT-EEEEES---STT--HH-HH-E-
T ss_pred             cccEEecCCCCCCC-------CCccchhhhcCcc-ccccceEEEcCCce-EEEEECC-ceEEecCCccCccccc-ccCc-
Confidence            45555555554322       1234455555443 45667888999998 6655544 78877322  100000 0000 


Q ss_pred             cccCCCCCCccccccccCc-cCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEce----eccCCCcccCCcceeec
Q 016318          111 SELCNPKPIATSYLKNEHI-CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLA----TEAEGVPLRFTNDLDID  185 (391)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~-~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~----~~~~~~~~~~~~~l~~d  185 (391)
                                    ..... -++=..|.+++ .|-||..+....|++..+.+..-....    +...+..-+....+..+
T Consensus        74 --------------~Ig~g~W~~F~~i~~d~-~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~  138 (229)
T PF14517_consen   74 --------------QIGDGGWNSFKFIFFDP-TGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAG  138 (229)
T ss_dssp             --------------EEE-S-GGG-SEEEE-T-TS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-
T ss_pred             --------------ccccCcccceeEEEecC-CccEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeC
Confidence                          00000 11334788888 899998876555888765433222221    11111122345667889


Q ss_pred             CCCCEEEEeCCCcccchhheeeecccCCCceEEEE-eCCCCe-------EEEeccCCCCcceEEEccCCCEEEEEeCCCC
Q 016318          186 DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY-DPTTKQ-------TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG  257 (391)
Q Consensus       186 ~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~~~~-------~~~~~~~~~~~ngia~~~d~~~l~v~et~~~  257 (391)
                      ++|.||..+.                  +|++++. .|....       ..+...+-....-|.++|++. ||.. ..++
T Consensus       139 ~~GvLY~i~~------------------dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V-~~~G  198 (229)
T PF14517_consen  139 PNGVLYAITP------------------DGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAV-KSNG  198 (229)
T ss_dssp             TTS-EEEEET------------------TE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETT
T ss_pred             CCccEEEEcC------------------CCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCc-EEEE-ecCC
Confidence            9999999985                  3678887 343321       111123333466788999998 6666 4577


Q ss_pred             eEEEEE
Q 016318          258 RLHKYW  263 (391)
Q Consensus       258 ~I~~~~  263 (391)
                      .|+|+.
T Consensus       199 ~lyr~~  204 (229)
T PF14517_consen  199 KLYRGR  204 (229)
T ss_dssp             EEEEES
T ss_pred             EEeccC
Confidence            898885

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=94.67  E-value=0.16  Score=37.75  Aligned_cols=68  Identities=19%  Similarity=0.233  Sum_probs=43.9

Q ss_pred             cCcceEEEccCCCe---------eEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEe
Q 016318           69 QGPESMAFDPLGRG---------PYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (391)
Q Consensus        69 ~gPe~i~~d~~G~~---------ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d  139 (391)
                      .||+++.+..|+..         .|.+...+.|+.+++++++..+.                       ....|.||.++
T Consensus         6 vG~~sFy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~~~~~~va~-----------------------g~~~aNGI~~s   62 (86)
T PF01731_consen    6 VGPDSFYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDGKEVKVVAS-----------------------GFSFANGIAIS   62 (86)
T ss_pred             ECcCcEEEECchhhCcHHHHHHHHHhcCCCceEEEEeCCEeEEeec-----------------------cCCCCceEEEc
Confidence            47888877765420         13334457788887765444322                       14678999999


Q ss_pred             cCCCcEEEEECCCC-eEEEeC
Q 016318          140 KKTGDLYIADAYFG-LMKVGP  159 (391)
Q Consensus       140 ~~~g~L~V~d~~~g-l~~~d~  159 (391)
                      +++..|||++...+ |..+..
T Consensus        63 ~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   63 PDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             CCCCEEEEEeccCCeEEEEEe
Confidence            86678999987744 665543

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=94.57  E-value=3.4  Score=37.35  Aligned_cols=217  Identities=10%  Similarity=0.082  Sum_probs=111.8

Q ss_pred             cCccceEEEecCCCcEEEEECC-CCeEEEeCCCC-eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheee
Q 016318          130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g-~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~  207 (391)
                      .+|...+++++..|+++..... +-|...+..++ ... ..+..++.--+..+.+|..|.|++..+.+-           
T Consensus        14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~-ck~vld~~hkrsVRsvAwsp~g~~La~aSF-----------   81 (312)
T KOG0645|consen   14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWT-CKTVLDDGHKRSVRSVAWSPHGRYLASASF-----------   81 (312)
T ss_pred             CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEE-EEEeccccchheeeeeeecCCCcEEEEeec-----------
Confidence            4688899999832665554443 44555555422 222 112223333457889999999995444432           


Q ss_pred             ecccCCCceEEEEeCCCCeEEEec--c-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC--
Q 016318          208 VFSAEDTGRVLKYDPTTKQTTVLL--R-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP--  282 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~~~~--~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p--  282 (391)
                            +..+..|...+++++.+.  + .-...-+++++++|++|-.+ +....+|...++.+  .+++..+-+.+.-  
T Consensus        82 ------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATC-SRDKSVWiWe~ded--dEfec~aVL~~HtqD  152 (312)
T KOG0645|consen   82 ------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATC-SRDKSVWIWEIDED--DEFECIAVLQEHTQD  152 (312)
T ss_pred             ------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEe-eCCCeEEEEEecCC--CcEEEEeeecccccc
Confidence                  355666666666666543  2 23456789999999976655 55678888877632  3344433232211  


Q ss_pred             -CceEeCCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCc-cceEEEEECCCCCEEEEEeCCCCC
Q 016318          283 -DNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGR-LHAMAVKYSPEGKILQVLEDSKGK  360 (391)
Q Consensus       283 -~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~v~~~d~~g~~~~~~~~~~g~  360 (391)
                       ..+..-|.-.++++.....++            ++....+ ...+.....+++. .....+.|++.|..+.+-.+ ++.
T Consensus       153 VK~V~WHPt~dlL~S~SYDnTI------------k~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd-D~t  218 (312)
T KOG0645|consen  153 VKHVIWHPTEDLLFSCSYDNTI------------KVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD-DGT  218 (312)
T ss_pred             ccEEEEcCCcceeEEeccCCeE------------EEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecC-Ccc
Confidence             123333333344443332222            1112222 1111111222222 13456778888887776543 444


Q ss_pred             eeece--eEEE-EECCEEEEecCC
Q 016318          361 VVKAI--SEVE-EKDGKLWMGSVL  381 (391)
Q Consensus       361 ~~~~i--s~~~-~~~g~Lylgs~~  381 (391)
                      +.-..  +.+. ++.+.+|--...
T Consensus       219 v~Iw~~~~~~~~~~sr~~Y~v~W~  242 (312)
T KOG0645|consen  219 VSIWRLYTDLSGMHSRALYDVPWD  242 (312)
T ss_pred             eEeeeeccCcchhcccceEeeeec
Confidence            32222  3332 455677744333

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.56  E-value=4.7  Score=38.84  Aligned_cols=96  Identities=20%  Similarity=0.279  Sum_probs=54.6

Q ss_pred             eEEEeCCCCeeEEceeccC--CCcccCCcceee--cC-CCCEEEEeCCCcccchhheeeecccCCCceEEEE---eCCCC
Q 016318          154 LMKVGPEGGLATSLATEAE--GVPLRFTNDLDI--DD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY---DPTTK  225 (391)
Q Consensus       154 l~~~d~~~g~~~~~~~~~~--~~~~~~~~~l~~--d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~---d~~~~  225 (391)
                      ++++|++++.++.+.....  ...+.-+++++.  ++ +|.+|+....                .+|.+..|   +...+
T Consensus       131 ~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g  194 (381)
T PF02333_consen  131 LFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDG  194 (381)
T ss_dssp             EEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTS
T ss_pred             EEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCC
Confidence            8899998887776643211  112345788887  33 5777776532                13444332   22333


Q ss_pred             eEE-Eec---cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          226 QTT-VLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       226 ~~~-~~~---~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .+. .+.   .....+.|++++....+||++|- +..||+|..+-
T Consensus       195 ~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep  238 (381)
T PF02333_consen  195 KVSATLVREFKVGSQPEGCVVDDETGRLYVGEE-DVGIWRYDAEP  238 (381)
T ss_dssp             SEEEEEEEEEE-SS-EEEEEEETTTTEEEEEET-TTEEEEEESSC
T ss_pred             cEeeEEEEEecCCCcceEEEEecccCCEEEecC-ccEEEEEecCC
Confidence            221 111   22346789999988888999986 57999998763

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.51  E-value=3.1  Score=40.92  Aligned_cols=108  Identities=20%  Similarity=0.207  Sum_probs=64.2

Q ss_pred             EEecCCCcEEEEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccC
Q 016318          137 RFDKKTGDLYIADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       137 ~~d~~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      +|.+++..|.++....|   |+.+|..++....+... .+.  .  ..=...+|| .|+|+....               
T Consensus       244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi--~--~~Ps~spdG~~ivf~Sdr~---------------  303 (425)
T COG0823         244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGI--N--TSPSWSPDGSKIVFTSDRG---------------  303 (425)
T ss_pred             cCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-Ccc--c--cCccCCCCCCEEEEEeCCC---------------
Confidence            56664444555544433   99999988775554321 111  0  123456788 466665331               


Q ss_pred             CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCe--EEEEEe
Q 016318          213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR--LHKYWL  264 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~--I~~~~~  264 (391)
                      +.-.|+++++++++.+.+.........-.++|||+++.+.....+.  |..+++
T Consensus       304 G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~  357 (425)
T COG0823         304 GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL  357 (425)
T ss_pred             CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence            1237999999998887776555444456789999987776533333  555544

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=94.48  E-value=6.3  Score=40.00  Aligned_cols=185  Identities=15%  Similarity=0.067  Sum_probs=103.3

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ..-|+++..+.|+ ++....+|.|..||.........                    .+...+..+.|+..+.+..+-|+
T Consensus        70 rsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~~--------------------~d~~gg~IWsiai~p~~~~l~Ig  128 (691)
T KOG2048|consen   70 RSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKYN--------------------IDSNGGAIWSIAINPENTILAIG  128 (691)
T ss_pred             CceeeEEEccCCe-EEeecCCceEEEEecccCceeEE--------------------ecCCCcceeEEEeCCccceEEee
Confidence            3557888886666 99999999999998863332221                    22235667788888866667887


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ....-++-++...++++.... .. .+-...-.+..+++|.=.++.+.                 +|.+-.+|..+++.-
T Consensus       129 cddGvl~~~s~~p~~I~~~r~-l~-rq~sRvLslsw~~~~~~i~~Gs~-----------------Dg~Iriwd~~~~~t~  189 (691)
T KOG2048|consen  129 CDDGVLYDFSIGPDKITYKRS-LM-RQKSRVLSLSWNPTGTKIAGGSI-----------------DGVIRIWDVKSGQTL  189 (691)
T ss_pred             cCCceEEEEecCCceEEEEee-cc-cccceEEEEEecCCccEEEeccc-----------------CceEEEEEcCCCceE
Confidence            433346666666666554321 11 11223456677788863444433                 466888998777553


Q ss_pred             Ee----ccCCC-----CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEE
Q 016318          229 VL----LRNLQ-----FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAI  297 (391)
Q Consensus       229 ~~----~~~~~-----~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~  297 (391)
                      .+    .+++.     -..++.+-.|+. | ++....+.|..++.+-.  ...+.+....+-.-.++++.+++ ++.|.
T Consensus       190 ~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I-~sgDS~G~V~FWd~~~g--TLiqS~~~h~adVl~Lav~~~~d~vfsaG  264 (691)
T KOG2048|consen  190 HIITMQLDRLSKREPTIVWSVLFLRDST-I-ASGDSAGTVTFWDSIFG--TLIQSHSCHDADVLALAVADNEDRVFSAG  264 (691)
T ss_pred             EEeeecccccccCCceEEEEEEEeecCc-E-EEecCCceEEEEcccCc--chhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence            32    12222     234666666775 4 44444566666653221  11222222222234567776655 55543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=94.46  E-value=3.5  Score=38.12  Aligned_cols=240  Identities=17%  Similarity=0.197  Sum_probs=121.7

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCcc-ceEEEecCCCcEEEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIAD  149 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P-~gi~~d~~~g~L~V~d  149 (391)
                      .+++.|.+.|..+-+|..||+|+.||-..+. ++.                   .... .-+| ..+++++ +|+..+..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar-------------------~lsa-H~~pi~sl~WS~-dgr~Llts   83 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IAR-------------------MLSA-HVRPITSLCWSR-DGRKLLTS   83 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-hhh-------------------hhhc-cccceeEEEecC-CCCEeeee
Confidence            7899999999989999999999999876221 110                   0001 2233 4788998 66655544


Q ss_pred             -CCCCeEEEeCCCCee-EEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          150 -AYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       150 -~~~gl~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                       ....+-.+|...|.. +.+.  ++.    -..+.-..+ +-+..++.-             ++  ....+..+++  .+
T Consensus        84 S~D~si~lwDl~~gs~l~rir--f~s----pv~~~q~hp~k~n~~va~~-------------~~--~sp~vi~~s~--~~  140 (405)
T KOG1273|consen   84 SRDWSIKLWDLLKGSPLKRIR--FDS----PVWGAQWHPRKRNKCVATI-------------ME--ESPVVIDFSD--PK  140 (405)
T ss_pred             cCCceeEEEeccCCCceeEEE--ccC----ccceeeeccccCCeEEEEE-------------ec--CCcEEEEecC--Cc
Confidence             445677778765542 1111  000    001111222 223333321             11  1233444443  22


Q ss_pred             EEEec--cC--C-CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc----cCCCCCceEeCCCCCEEEEE
Q 016318          227 TTVLL--RN--L-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI----LPGYPDNVRTNEKGEFWVAI  297 (391)
Q Consensus       227 ~~~~~--~~--~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~----~~g~p~~i~~d~~G~lwva~  297 (391)
                      -+.+.  +.  + ..+....+++.|+++|.. +.++.+..|+...     .+..+.    .-.....|.+...|.+++-.
T Consensus       141 h~~Lp~d~d~dln~sas~~~fdr~g~yIitG-tsKGkllv~~a~t-----~e~vas~rits~~~IK~I~~s~~g~~liiN  214 (405)
T KOG1273|consen  141 HSVLPKDDDGDLNSSASHGVFDRRGKYIITG-TSKGKLLVYDAET-----LECVASFRITSVQAIKQIIVSRKGRFLIIN  214 (405)
T ss_pred             eeeccCCCccccccccccccccCCCCEEEEe-cCcceEEEEecch-----heeeeeeeechheeeeEEEEeccCcEEEEe
Confidence            22221  11  1 123334688899977766 7788999997543     232221    11134567888888877766


Q ss_pred             cCCCchhhhhhhc---Cccceeee--eec------------CccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCC
Q 016318          298 HCRRSLYSHLMAL---YPKIRHFL--LKL------------PISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGK  360 (391)
Q Consensus       298 ~~~~~~~~~~l~~---~~~~~~~~--~~l------------~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~  360 (391)
                      ...|....+.+..   ....+.+-  .++            -......+.+......|.+.+.=..-|+++.++|...|+
T Consensus       215 tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE  294 (405)
T KOG1273|consen  215 TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE  294 (405)
T ss_pred             cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh
Confidence            5554432211110   00111100  000            000011122222234456666556778999999988876


Q ss_pred             e
Q 016318          361 V  361 (391)
Q Consensus       361 ~  361 (391)
                      .
T Consensus       295 ~  295 (405)
T KOG1273|consen  295 E  295 (405)
T ss_pred             h
Confidence            4

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.46  E-value=5.2  Score=38.97  Aligned_cols=184  Identities=13%  Similarity=0.060  Sum_probs=99.5

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ..-.++.|-.||+++-+|...|.|-.+|.+. +.+..                   .........+-+.|.+.++.+++.
T Consensus        69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR-------------------~~~ah~apv~~~~f~~~d~t~l~s  128 (487)
T KOG0310|consen   69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILR-------------------QLYAHQAPVHVTKFSPQDNTMLVS  128 (487)
T ss_pred             cceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHH-------------------HHhhccCceeEEEecccCCeEEEe
Confidence            3667888889999777788888887777541 00000                   000011223456677756666666


Q ss_pred             ECCCCeEE-EeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          149 DAYFGLMK-VGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       149 d~~~gl~~-~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      .....+.+ +|..+..+. .  ...+. -.+....++.+ +++|.+|.+.                 +|.|-.||..+..
T Consensus       129 ~sDd~v~k~~d~s~a~v~-~--~l~~h-tDYVR~g~~~~~~~hivvtGsY-----------------Dg~vrl~DtR~~~  187 (487)
T KOG0310|consen  129 GSDDKVVKYWDLSTAYVQ-A--ELSGH-TDYVRCGDISPANDHIVVTGSY-----------------DGKVRLWDTRSLT  187 (487)
T ss_pred             cCCCceEEEEEcCCcEEE-E--EecCC-cceeEeeccccCCCeEEEecCC-----------------CceEEEEEeccCC
Confidence            55555444 455655442 1  11111 12556666655 5678888754                 5778788876653


Q ss_pred             EEE--eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec-cccCccceeecccCCCCCceEeCCCCCEEEEEc
Q 016318          227 TTV--LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI-GEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       227 ~~~--~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~-g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~  298 (391)
                      ..+  +..+. ....|.+-|.|. ++++ .+++.+..+++. |.+. -.. +.+..-...+++...+++-+++..
T Consensus       188 ~~v~elnhg~-pVe~vl~lpsgs-~ias-AgGn~vkVWDl~~G~ql-l~~-~~~H~KtVTcL~l~s~~~rLlS~s  257 (487)
T KOG0310|consen  188 SRVVELNHGC-PVESVLALPSGS-LIAS-AGGNSVKVWDLTTGGQL-LTS-MFNHNKTVTCLRLASDSTRLLSGS  257 (487)
T ss_pred             ceeEEecCCC-ceeeEEEcCCCC-EEEE-cCCCeEEEEEecCCcee-hhh-hhcccceEEEEEeecCCceEeecc
Confidence            332  33332 233455556776 5454 556778888876 3211 001 111111245677777777555433

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=94.42  E-value=2  Score=41.97  Aligned_cols=112  Identities=15%  Similarity=0.099  Sum_probs=65.3

Q ss_pred             eEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccC
Q 016318          135 GLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      -+.+++....|++.-.++| +..+|.++-.........   .-....+|++.+... |+++-..                
T Consensus       169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~---HsAP~~gicfspsne~l~vsVG~----------------  229 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA---HSAPCRGICFSPSNEALLVSVGY----------------  229 (673)
T ss_pred             EeecccccceeeEeeccCCeEEEEeccCCCcccchhhh---ccCCcCcceecCCccceEEEecc----------------
Confidence            3456653444555545566 666676643211111111   112357899998664 5555422                


Q ss_pred             CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318          213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~  267 (391)
                       +.+|+.||...++...-..--..-..++|+++|.+| ++.+.+++|+.|++.+.
T Consensus       230 -Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L-~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  230 -DKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYL-CAGNSKGELIAYDMRST  282 (673)
T ss_pred             -cceEEEeecccccccceeeecCCcceeeecCCceEE-EeecCCceEEEEecccC
Confidence             468999998755432211111223479999999855 55578899999998874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=94.42  E-value=3.7  Score=37.10  Aligned_cols=146  Identities=16%  Similarity=0.125  Sum_probs=77.5

Q ss_pred             CccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~  209 (391)
                      ..+..+.+++ -+..+|+....| |-++|..+|+.-.-.....   ....|+|...++..+++|.+.             
T Consensus       148 skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h---~~~Ind~q~s~d~T~FiT~s~-------------  210 (327)
T KOG0643|consen  148 SKITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEH---SSKINDLQFSRDRTYFITGSK-------------  210 (327)
T ss_pred             cceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhh---ccccccccccCCcceEEeccc-------------
Confidence            4455666676 455555544544 8899988874222111111   236899999999999998754             


Q ss_pred             ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcccee-e---------cccC
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA-F---------AILP  279 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~-~---------~~~~  279 (391)
                          +-.--.+|-.+-++..-...-..-|..+++|-.+++.....  ..-.-++-...+.|++|. |         ....
T Consensus       211 ----Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGG--qeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk  284 (327)
T KOG0643|consen  211 ----DTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGG--QEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK  284 (327)
T ss_pred             ----CccceeeeccceeeEEEeeecccccceecccccceEEecCC--ceeeeeeeecccccchhhhHHHHHHHHHhcccc
Confidence                12223344433333222222234577888887776554321  111111111112343321 1         1112


Q ss_pred             ---CCCCceEeCCCCCEEEEEcC
Q 016318          280 ---GYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       280 ---g~p~~i~~d~~G~lwva~~~  299 (391)
                         |-.+.+++.|+|..|.+-..
T Consensus       285 GHFGPINsvAfhPdGksYsSGGE  307 (327)
T KOG0643|consen  285 GHFGPINSVAFHPDGKSYSSGGE  307 (327)
T ss_pred             ccccCcceeEECCCCcccccCCC
Confidence               33477999999999876544

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=94.39  E-value=0.96  Score=42.42  Aligned_cols=60  Identities=18%  Similarity=0.160  Sum_probs=42.7

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeC----CceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDG----LKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      .+++++++|.++-+++..|+|.|+-.    +++.+|+...                     .+-+...++|++ +..++.
T Consensus       177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~---------------------~~~~IySL~Fs~-ds~~L~  234 (391)
T KOG2110|consen  177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT---------------------YPVSIYSLSFSP-DSQFLA  234 (391)
T ss_pred             eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc---------------------eeeEEEEEEECC-CCCeEE
Confidence            47899999999999999999999832    2555565431                     145567899998 666666


Q ss_pred             EECCCC
Q 016318          148 ADAYFG  153 (391)
Q Consensus       148 ~d~~~g  153 (391)
                      +....+
T Consensus       235 ~sS~Te  240 (391)
T KOG2110|consen  235 ASSNTE  240 (391)
T ss_pred             EecCCC
Confidence            655543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=94.39  E-value=1.5  Score=41.85  Aligned_cols=106  Identities=15%  Similarity=0.055  Sum_probs=68.7

Q ss_pred             cCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCC-cccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGV-PLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~-~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      +|+...+....++..|..+....-+-.+|..+..+....+. ++. -..-.+.+.+.|+|.+..+.+.            
T Consensus       341 gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA-~g~k~asDwtrvvfSpd~~YvaAGS~------------  407 (459)
T KOG0288|consen  341 GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA-EGFKCASDWTRVVFSPDGSYVAAGSA------------  407 (459)
T ss_pred             CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec-cccccccccceeEECCCCceeeeccC------------
Confidence            45666677666344566665455688888887766654432 111 1123566788888876666544            


Q ss_pred             cccCCCceEEEEeCCCCeEEEeccCCC---CcceEEEccCCCEEEEEe
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLLRNLQ---FPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~~~~~---~~ngia~~~d~~~l~v~e  253 (391)
                           +|.|+.|+..+++++.......   ..+.+++++-|..+.-++
T Consensus       408 -----dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  408 -----DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             -----CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence                 7899999999999887654432   245677888887665543

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=94.27  E-value=1.6  Score=38.87  Aligned_cols=86  Identities=24%  Similarity=0.365  Sum_probs=58.2

Q ss_pred             CccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcc-cCCcceeecC-CCCEEEEeCCCcccchhheeee
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPL-RFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~-~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      .+-.||.+-+.+|+||-......||.+|+.+|..+.+....-...+ ....++++.| -.+|-+..+             
T Consensus        27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~-------------   93 (236)
T PF14339_consen   27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN-------------   93 (236)
T ss_pred             CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-------------
Confidence            4567999988889999987777899999999987766311111111 1245666666 356766653             


Q ss_pred             cccCCCceEEEEeCCCCeEEEeccCC
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLLRNL  234 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~~~~  234 (391)
                           +|.=+|+++++|.+......+
T Consensus        94 -----~GqNlR~npdtGav~~~Dg~L  114 (236)
T PF14339_consen   94 -----TGQNLRLNPDTGAVTIVDGNL  114 (236)
T ss_pred             -----CCcEEEECCCCCCceeccCcc
Confidence                 478899999999854443333

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.21  E-value=1.5  Score=46.44  Aligned_cols=156  Identities=13%  Similarity=0.109  Sum_probs=86.8

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCc---eeEEEeecCC---CcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLK---WTDFAFTSNN---RSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      -.++.+.+||..++.|+.|.-|..|....   -..+...+..   ....|       .. ......+....+++++ ++.
T Consensus        72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-------~~-~l~~H~~DV~Dv~Wsp-~~~  142 (942)
T KOG0973|consen   72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV-------VS-ILRGHDSDVLDVNWSP-DDS  142 (942)
T ss_pred             eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE-------EE-EEecCCCccceeccCC-Ccc
Confidence            34556999999888999887766665431   1111100000   00000       00 1111235567788888 777


Q ss_pred             EEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 LYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      +.|.-.. +-|..+|..+.+.......+    ...+-++.+||-|..+.+.+.                 +..|..|...
T Consensus       143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H----~s~VKGvs~DP~Gky~ASqsd-----------------Drtikvwrt~  201 (942)
T KOG0973|consen  143 LLVSVSLDNSVIIWNAKTFELLKVLRGH----QSLVKGVSWDPIGKYFASQSD-----------------DRTLKVWRTS  201 (942)
T ss_pred             EEEEecccceEEEEccccceeeeeeecc----cccccceEECCccCeeeeecC-----------------CceEEEEEcc
Confidence            7777655 45888888765322222222    246889999999997777643                 4456666643


Q ss_pred             CCeEEE-eccCCC------CcceEEEccCCCEEEEEeCCC
Q 016318          224 TKQTTV-LLRNLQ------FPNGLSLSKDKSFFVFCEGSV  256 (391)
Q Consensus       224 ~~~~~~-~~~~~~------~~ngia~~~d~~~l~v~et~~  256 (391)
                      +=++.. +...+.      +-.-+.++|||++|-....-+
T Consensus       202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n  241 (942)
T KOG0973|consen  202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN  241 (942)
T ss_pred             cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence            322222 222211      223467899999776654433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.18  E-value=4.5  Score=39.48  Aligned_cols=110  Identities=16%  Similarity=0.107  Sum_probs=59.8

Q ss_pred             ccceEEEecCCCcEEEEECCCCeEEEeCCCCeeE--EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318          132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLAT--SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       132 ~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~--~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~  209 (391)
                      +..++.++. ++.+|++....++++-+.++...+  .+...........+.++.+.+++++|++...             
T Consensus       282 ~l~~v~~~~-dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~-------------  347 (398)
T PLN00033        282 RIQNMGWRA-DGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS-------------  347 (398)
T ss_pred             ceeeeeEcC-CCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC-------------
Confidence            345777776 789999876666666544432111  1211110111134677888889999998743             


Q ss_pred             ccCCCceEEEEeCCCCeEEEec--cCCC-CcceEEEccCCCEEEEEeCCCCeEEEE
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLL--RNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKY  262 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~--~~~~-~~ngia~~~d~~~l~v~et~~~~I~~~  262 (391)
                           |.+++-....+..+...  .... .-..|.+.++++ .|+. ..++.|.|+
T Consensus       348 -----G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~-G~~G~il~~  396 (398)
T PLN00033        348 -----GILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVL-GNDGVLLRY  396 (398)
T ss_pred             -----CcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc-eEEE-eCCcEEEEe
Confidence                 55555544333333332  1221 123677666666 6665 345677776

>KOG4328 consensus WD40 protein [Function unknown]

Probab=94.01  E-value=6.3  Score=38.20  Aligned_cols=105  Identities=16%  Similarity=0.172  Sum_probs=57.8

Q ss_pred             cceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecc
Q 016318          133 PLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~  210 (391)
                      ..+|.|.+.+..-+++.++.| |-..|.+++..+.+.+....  -....++.+.. ++.+++.+.-              
T Consensus       237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d--~~~fs~~d~~~e~~~vl~~~~~--------------  300 (498)
T KOG4328|consen  237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTD--NIWFSSLDFSAESRSVLFGDNV--------------  300 (498)
T ss_pred             ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCcc--ceeeeeccccCCCccEEEeecc--------------
Confidence            457888874444444445666 66667777766655433111  12344555543 5577777632              


Q ss_pred             cCCCceEEEEeCCCCeEEEec--cCCCCcceEEEccCCCEEEEEeCCCC
Q 016318          211 AEDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVG  257 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~~~--~~~~~~ngia~~~d~~~l~v~et~~~  257 (391)
                          |-+-.+|..++..+...  -.-...++|++.|-..+++.+....+
T Consensus       301 ----G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~  345 (498)
T KOG4328|consen  301 ----GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ  345 (498)
T ss_pred             ----cceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence                44445665554432221  11126789999998886665544333

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.99  E-value=6.6  Score=38.32  Aligned_cols=98  Identities=14%  Similarity=0.011  Sum_probs=51.9

Q ss_pred             ceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe-EEEec-cCCCCcceEEEccCCCEEEEEeCCCCe
Q 016318          181 DLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ-TTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGR  258 (391)
Q Consensus       181 ~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~  258 (391)
                      .+...++|.+++....                  |.+++-....+. ...+. .......++++.+|+. +|++ +..+.
T Consensus       243 ~v~~~~dG~~~~vg~~------------------G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~-g~~G~  302 (398)
T PLN00033        243 TVNRSPDGDYVAVSSR------------------GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLL-TRGGG  302 (398)
T ss_pred             eEEEcCCCCEEEEECC------------------ccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEE-eCCce
Confidence            3455667776666532                  566665444333 23332 2223456788888988 5555 34566


Q ss_pred             EEEEEeccccCccceeecccC----C-CCCceEeCCCCCEEEEEcC
Q 016318          259 LHKYWLIGEKAGNLEAFAILP----G-YPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       259 I~~~~~~g~~~g~~~~~~~~~----g-~p~~i~~d~~G~lwva~~~  299 (391)
                      +.+-.-.|.. .+...|...+    + ...++....++++|++-..
T Consensus       303 l~~S~d~G~~-~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~  347 (398)
T PLN00033        303 LYVSKGTGLT-EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS  347 (398)
T ss_pred             EEEecCCCCc-ccccceeecccCCCCcceEEEEEcCCCcEEEEECC
Confidence            7766433321 1111232211    1 1345677788888887655

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.98  E-value=6.6  Score=38.30  Aligned_cols=140  Identities=10%  Similarity=0.055  Sum_probs=83.2

Q ss_pred             cceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318          133 PLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      ..+..+.+.++.+.+...|.| |-.+|..... .....-..|.   ....+..-+.|.+.++..+               
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~---pVe~vl~lpsgs~iasAgG---------------  216 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGC---PVESVLALPSGSLIASAGG---------------  216 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCC---ceeeEEEcCCCCEEEEcCC---------------
Confidence            444566664667888878877 5555655432 1121212222   3567778888888887754               


Q ss_pred             CCCceEEEEeCCCCe-EEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec--ccCCCCCceEe
Q 016318          212 EDTGRVLKYDPTTKQ-TTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPGYPDNVRT  287 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~-~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~--~~~g~p~~i~~  287 (391)
                         ..+-.||..+|. ...... ....-..+++..+++.|+- ..-.+++..|+..     +.++..  ..||-.-+|++
T Consensus       217 ---n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS-~sLD~~VKVfd~t-----~~Kvv~s~~~~~pvLsiav  287 (487)
T KOG0310|consen  217 ---NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS-GSLDRHVKVFDTT-----NYKVVHSWKYPGPVLSIAV  287 (487)
T ss_pred             ---CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee-cccccceEEEEcc-----ceEEEEeeecccceeeEEe
Confidence               356678876443 322222 2234567888888876654 4667788888733     233332  34554556788


Q ss_pred             CCCCC-EEEEEcCC
Q 016318          288 NEKGE-FWVAIHCR  300 (391)
Q Consensus       288 d~~G~-lwva~~~~  300 (391)
                      ++++. +.+++.++
T Consensus       288 s~dd~t~viGmsnG  301 (487)
T KOG0310|consen  288 SPDDQTVVIGMSNG  301 (487)
T ss_pred             cCCCceEEEecccc
Confidence            77665 77777664

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=93.93  E-value=2.5  Score=40.33  Aligned_cols=191  Identities=14%  Similarity=0.086  Sum_probs=99.9

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      |..-+-.++.+|++++...+.+.|+....|+-+........+...                    .....+.|..  ++.
T Consensus       217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt--------------------dkVt~ak~~~--~~~  274 (459)
T KOG0288|consen  217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT--------------------DKVTAAKFKL--SHS  274 (459)
T ss_pred             ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccc--------------------cceeeehhhc--ccc
Confidence            333445788999999988888889877777666222221111111                    1111222221  111


Q ss_pred             -EEEEC-CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          146 -YIADA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       146 -~V~d~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                       .|.-. ..-+-..|........  +.   .+....|+|+..  +...+++.                 -++.|-.||..
T Consensus       275 ~vVsgs~DRtiK~WDl~k~~C~k--t~---l~~S~cnDI~~~--~~~~~SgH-----------------~DkkvRfwD~R  330 (459)
T KOG0288|consen  275 RVVSGSADRTIKLWDLQKAYCSK--TV---LPGSQCNDIVCS--ISDVISGH-----------------FDKKVRFWDIR  330 (459)
T ss_pred             ceeeccccchhhhhhhhhhheec--cc---cccccccceEec--ceeeeecc-----------------cccceEEEecc
Confidence             22111 1112222322211110  11   123467777765  33444442                 24667778866


Q ss_pred             CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC-----CceEeCCCCCEEEEEc
Q 016318          224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP-----DNVRTNEKGEFWVAIH  298 (391)
Q Consensus       224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p-----~~i~~d~~G~lwva~~  298 (391)
                      +.....-.+.......+.++.++..|..+ +..+.+..+++.+.  .-...|. -+|+-     .-+.++|+|.+..|..
T Consensus       331 s~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~--eI~~~~s-A~g~k~asDwtrvvfSpd~~YvaAGS  406 (459)
T KOG0288|consen  331 SADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTK--EIRQTFS-AEGFKCASDWTRVVFSPDGSYVAAGS  406 (459)
T ss_pred             CCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccc--cEEEEee-ccccccccccceeEECCCCceeeecc
Confidence            55544444444466788899999888777 66777888876542  1122222 12221     2367888888776666


Q ss_pred             CCCchhhh
Q 016318          299 CRRSLYSH  306 (391)
Q Consensus       299 ~~~~~~~~  306 (391)
                      ..+++++|
T Consensus       407 ~dgsv~iW  414 (459)
T KOG0288|consen  407 ADGSVYIW  414 (459)
T ss_pred             CCCcEEEE
Confidence            66666554

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.93  E-value=8.2  Score=39.23  Aligned_cols=123  Identities=15%  Similarity=0.119  Sum_probs=64.0

Q ss_pred             CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccC-ccceEEEecCCCcEEEEECCCCeEEE
Q 016318           79 LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICG-RPLGLRFDKKTGDLYIADAYFGLMKV  157 (391)
Q Consensus        79 ~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~P~gi~~d~~~g~L~V~d~~~gl~~~  157 (391)
                      +| .+|+++.++.|+.+|...-+..-..........          .....|. ...++++.  ++++|+++....|+.+
T Consensus        69 ~g-~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~----------~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~AL  135 (527)
T TIGR03075        69 DG-VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDV----------IPVMCCDVVNRGVALY--DGKVFFGTLDARLVAL  135 (527)
T ss_pred             CC-EEEEECCCCcEEEEECCCCceeeEecCCCCccc----------ccccccccccccceEE--CCEEEEEcCCCEEEEE
Confidence            45 499999999999999762111111100000000          0000010 11345554  5789999877779999


Q ss_pred             eCCCCeeEEceeccCCCc--ccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          158 GPEGGLATSLATEAEGVP--LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       158 d~~~g~~~~~~~~~~~~~--~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      |.++|++.=-.. .....  ......-.+. +|.||+..++..+            ...|.|+.+|.+||+..
T Consensus       136 Da~TGk~~W~~~-~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~l  194 (527)
T TIGR03075       136 DAKTGKVVWSKK-NGDYKAGYTITAAPLVV-KGKVITGISGGEF------------GVRGYVTAYDAKTGKLV  194 (527)
T ss_pred             ECCCCCEEeecc-cccccccccccCCcEEE-CCEEEEeeccccc------------CCCcEEEEEECCCCcee
Confidence            999986432111 11100  0011111222 5688887654211            23578889999888754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.83  E-value=5.5  Score=36.87  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=52.9

Q ss_pred             CcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE-EeCCCCeEEE-eccCCCC--cceEEEccCCCEEEEEeC
Q 016318          179 TNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK-YDPTTKQTTV-LLRNLQF--PNGLSLSKDKSFFVFCEG  254 (391)
Q Consensus       179 ~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~-~d~~~~~~~~-~~~~~~~--~ngia~~~d~~~l~v~et  254 (391)
                      ..-++...+|.+..|.+.                 .|.|+| ||..+|+... +..+...  -..|+++||..+|.++ +
T Consensus       184 Iacv~Ln~~Gt~vATaSt-----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs-S  245 (346)
T KOG2111|consen  184 IACVALNLQGTLVATAST-----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS-S  245 (346)
T ss_pred             eeEEEEcCCccEEEEecc-----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE-c
Confidence            455677889998887754                 588887 7888876543 4444433  3589999999988777 6


Q ss_pred             CCCeEEEEEecccc
Q 016318          255 SVGRLHKYWLIGEK  268 (391)
Q Consensus       255 ~~~~I~~~~~~g~~  268 (391)
                      .++.|+.+.+.+..
T Consensus       246 dKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  246 DKGTLHIFSLRDTE  259 (346)
T ss_pred             CCCeEEEEEeecCC
Confidence            78899999887643

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.80  E-value=7.2  Score=38.11  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=60.7

Q ss_pred             eEEEecCCCc-EEEE-ECCCC----eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheee
Q 016318          135 GLRFDKKTGD-LYIA-DAYFG----LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       135 gi~~d~~~g~-L~V~-d~~~g----l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~  207 (391)
                      ++.+++ +|+ +.++ +..+.    |+.+|.++|+..  ...+...   ....+...++|+ +|.+...... +..    
T Consensus       128 ~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l--~d~i~~~---~~~~~~W~~d~~~~~y~~~~~~~-~~~----  196 (414)
T PF02897_consen  128 GFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFL--PDGIENP---KFSSVSWSDDGKGFFYTRFDEDQ-RTS----  196 (414)
T ss_dssp             EEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEE--EEEEEEE---ESEEEEECTTSSEEEEEECSTTT-SS-----
T ss_pred             eeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCc--CCccccc---ccceEEEeCCCCEEEEEEeCccc-ccc----
Confidence            466777 454 4333 33322    888899988432  2221111   122377777765 4444322100 000    


Q ss_pred             ecccCCCceEEEEeCCCCeEE--EeccCCC--C-cceEEEccCCCEEEEEeCCC---CeEEEEEecc
Q 016318          208 VFSAEDTGRVLKYDPTTKQTT--VLLRNLQ--F-PNGLSLSKDKSFFVFCEGSV---GRLHKYWLIG  266 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~--~~~~~~~--~-~ngia~~~d~~~l~v~et~~---~~I~~~~~~g  266 (391)
                        +..-...|+++...+.+.+  .+.+...  + --++..++|++++++....+   ..++.+++..
T Consensus       197 --~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  197 --DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             --CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             --cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence              0011346888887666433  4433322  2 34788999999988764433   4577777654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=93.79  E-value=0.29  Score=30.99  Aligned_cols=40  Identities=23%  Similarity=0.459  Sum_probs=28.9

Q ss_pred             CCEEEEeCCCcccchhheeeecccCCCc-eEEEEeCCCCeEEE-eccCCCCcceEEEcc
Q 016318          188 GNVYFTDSSTNYQRRNFMQLVFSAEDTG-RVLKYDPTTKQTTV-LLRNLQFPNGLSLSK  244 (391)
Q Consensus       188 G~ly~td~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~~~~~~~-~~~~~~~~ngia~~~  244 (391)
                      |+||++|.+.                 . .+.+-+.++...++ +.+.+..|+|||+++
T Consensus         1 ~~iYWtD~~~-----------------~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQ-----------------DPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTT-----------------TEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCC-----------------CcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            5799999762                 3 67777766555444 457789999999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=93.79  E-value=1.2  Score=42.43  Aligned_cols=178  Identities=17%  Similarity=0.261  Sum_probs=102.5

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      -.+...++|+.|.+|+..|..--|+..  .++.+                      .+....-..+|.++. +++-.|..
T Consensus       100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti----------------------lQaHDs~Vr~m~ws~-~g~wmiSg  156 (464)
T KOG0284|consen  100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI----------------------LQAHDSPVRTMKWSH-NGTWMISG  156 (464)
T ss_pred             eeEEEcCCCceeEeecccccEEEecCceeeHHHH----------------------hhhhcccceeEEEcc-CCCEEEEc
Confidence            356678899999999999988888774  11111                      011123345788886 55544443


Q ss_pred             CCCCeE-EEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC-eE
Q 016318          150 AYFGLM-KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK-QT  227 (391)
Q Consensus       150 ~~~gl~-~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~  227 (391)
                      ...|.. .+++.=..++.+....    -....++++.++...+++-+.                 +|++..+|..-. +-
T Consensus       157 D~gG~iKyWqpnmnnVk~~~ahh----~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee  215 (464)
T KOG0284|consen  157 DKGGMIKYWQPNMNNVKIIQAHH----AEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEE  215 (464)
T ss_pred             CCCceEEecccchhhhHHhhHhh----hhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchh
Confidence            334433 3444433333322211    135788999998888887643                 678888876433 33


Q ss_pred             EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC---CCCCceEeCCCCCEEEEEcC
Q 016318          228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP---GYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~---g~p~~i~~d~~G~lwva~~~  299 (391)
                      +++......+..++++|... ++++-...+ +.++|  .++.|+  -+..+-   ...-.+.+.++|+++.+...
T Consensus       216 ~vL~GHgwdVksvdWHP~kg-LiasgskDn-lVKlW--DprSg~--cl~tlh~HKntVl~~~f~~n~N~Llt~sk  284 (464)
T KOG0284|consen  216 RVLRGHGWDVKSVDWHPTKG-LIASGSKDN-LVKLW--DPRSGS--CLATLHGHKNTVLAVKFNPNGNWLLTGSK  284 (464)
T ss_pred             heeccCCCCcceeccCCccc-eeEEccCCc-eeEee--cCCCcc--hhhhhhhccceEEEEEEcCCCCeeEEccC
Confidence            45544456788999999887 555544444 66665  122222  122221   22345677888876665443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.78  E-value=5.1  Score=41.13  Aligned_cols=112  Identities=17%  Similarity=0.175  Sum_probs=64.1

Q ss_pred             ceEEEecCCCcEEEEECCCC------eEEEeCCCCeeEEceeccCCCcccCCcceee-cCCCCEEEEeCCCcccchhhee
Q 016318          134 LGLRFDKKTGDLYIADAYFG------LMKVGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~g------l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~-d~~G~ly~td~~~~~~~~~~~~  206 (391)
                      +|++.-  +|.||+.....|      +-++|+.+.+.+.......     .-.+.++ .-+|.||+.......       
T Consensus       374 ~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-----~r~~~gv~~~~g~iYi~GG~~~~-------  439 (571)
T KOG4441|consen  374 FGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-----RRSGHGVAVLGGKLYIIGGGDGS-------  439 (571)
T ss_pred             ceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-----ceeeeEEEEECCEEEEEcCcCCC-------
Confidence            455554  688998754332      8899999988776643211     1122232 338899998632100       


Q ss_pred             eecccCCCceEEEEeCCCCeEEEeccCC--CCcceEEEccCCCEEEEEeCCC-----CeEEEEEec
Q 016318          207 LVFSAEDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEGSV-----GRLHKYWLI  265 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngia~~~d~~~l~v~et~~-----~~I~~~~~~  265 (391)
                          ...-..+.+|||.+++.+....-.  ..-.|++.- ++ .||+.-...     ..+.+|+..
T Consensus       440 ----~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~  499 (571)
T KOG4441|consen  440 ----SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NG-KIYVVGGFDGTSALSSVERYDPE  499 (571)
T ss_pred             ----ccccceEEEEcCCCCceeecCCcccccccceEEEE-CC-EEEEECCccCCCccceEEEEcCC
Confidence                001257899999999987764321  223355543 34 388774322     236667633

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=93.77  E-value=4.4  Score=35.61  Aligned_cols=76  Identities=12%  Similarity=0.147  Sum_probs=46.9

Q ss_pred             cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCC
Q 016318          177 RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS  255 (391)
Q Consensus       177 ~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~  255 (391)
                      .....+++||.|++.++...                 +..-..||..+++..+-. ..-.....+.++|.-.+++-+ +.
T Consensus       232 savaav~vdpsgrll~sg~~-----------------dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~-sy  293 (350)
T KOG0641|consen  232 SAVAAVAVDPSGRLLASGHA-----------------DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC-SY  293 (350)
T ss_pred             ceeEEEEECCCcceeeeccC-----------------CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe-cc
Confidence            44567788999998887522                 223445555555433221 222344567888877766554 67


Q ss_pred             CCeEEEEEeccccCc
Q 016318          256 VGRLHKYWLIGEKAG  270 (391)
Q Consensus       256 ~~~I~~~~~~g~~~g  270 (391)
                      .+.|..-++.|+-+.
T Consensus       294 d~~ikltdlqgdla~  308 (350)
T KOG0641|consen  294 DMKIKLTDLQGDLAH  308 (350)
T ss_pred             cceEEEeecccchhh
Confidence            788988888886433

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=93.73  E-value=2  Score=40.87  Aligned_cols=118  Identities=18%  Similarity=0.302  Sum_probs=72.3

Q ss_pred             ccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecc
Q 016318          132 RPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       132 ~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~  210 (391)
                      ....|.|.. +|.++++... +.|-.+|+.++++..-.....|.   .+.-..+-.+|.+.-|..+ +..          
T Consensus       175 ~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~---k~~Raifl~~g~i~tTGfs-r~s----------  239 (472)
T KOG0303|consen  175 MVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA---KPARAIFLASGKIFTTGFS-RMS----------  239 (472)
T ss_pred             eEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCC---CcceeEEeccCceeeeccc-ccc----------
Confidence            346788887 7888887765 56999999998765443333443   3444555667775544433 221          


Q ss_pred             cCCCceEEEEeCCCCeEEEeccCCCCcceEE---EccCCCEEEEEeCCCCeEEEEEeccc
Q 016318          211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLS---LSKDKSFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia---~~~d~~~l~v~et~~~~I~~~~~~g~  267 (391)
                         ...+-.+|+.+-+.-.....+...|||-   .++|.+.+|++.-+.+.|.-|.+..+
T Consensus       240 ---eRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  240 ---ERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             ---ccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence               1233445554433222233344555654   57899999999887788888877654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=93.68  E-value=6.3  Score=37.11  Aligned_cols=80  Identities=18%  Similarity=0.322  Sum_probs=50.7

Q ss_pred             cccCcceEEEccCCCeeEEEecCCEEEEEeCCc---eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGLK---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      +...-|-+...|.+.++.+|+.||.++.|..+.   .+.+.  +.+  ..|+              ||     .|.+++.
T Consensus       147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~--Gh~--~~ct--------------~G-----~f~pdGK  203 (399)
T KOG0296|consen  147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS--GHN--SPCT--------------CG-----EFIPDGK  203 (399)
T ss_pred             ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec--CCC--CCcc--------------cc-----cccCCCc
Confidence            455667788899999999999999999997652   22221  111  1122              33     3555445


Q ss_pred             cEEEEECCCCeEEEeCCCCeeEEcee
Q 016318          144 DLYIADAYFGLMKVGPEGGLATSLAT  169 (391)
Q Consensus       144 ~L~V~d~~~gl~~~d~~~g~~~~~~~  169 (391)
                      ++..+....-|.++|+.+++...-.+
T Consensus       204 r~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  204 RILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             eEEEEecCceEEEEecCCCceeEEec
Confidence            56666544448899999996544333

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=93.67  E-value=2.5  Score=39.90  Aligned_cols=178  Identities=14%  Similarity=0.122  Sum_probs=107.5

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeC--CceeEEEeecCCCcc--cCCCCCCcc-ccccccCccCccceEEEec
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDG--LKWTDFAFTSNNRSE--LCNPKPIAT-SYLKNEHICGRPLGLRFDK  140 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~g~P~gi~~d~  140 (391)
                      |--..-++|.++++|..+..+++|..|-.|+.  +...++-..+..+..  ..+..+... +....+..-.-...+.+++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            44457789999999998899999998888872  111111111100000  001001100 0011111112234667776


Q ss_pred             CCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          141 KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       141 ~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                       .+.+|-+.+..-|-+.|..++....-..  .   ....+.+...+..++.++.++                 +..+..|
T Consensus       271 -~~v~yS~SwDHTIk~WDletg~~~~~~~--~---~ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~  327 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETGGLKSTLT--T---NKSLNCISYSPLSKLLASGSS-----------------DRHIRLW  327 (423)
T ss_pred             -CCceEeecccceEEEEEeecccceeeee--c---CcceeEeecccccceeeecCC-----------------CCceeec
Confidence             6788888888889999998875432111  1   124677777887788888765                 2346679


Q ss_pred             eCCCCeEEEeccCC----CCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          221 DPTTKQTTVLLRNL----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       221 d~~~~~~~~~~~~~----~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ||.++.-.++...+    ....++-.+|-+.+.+++.+..+.+...+...
T Consensus       328 DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  328 DPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             CCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence            99888655543322    35567889999888999988777777776543

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=93.63  E-value=2.4  Score=39.63  Aligned_cols=38  Identities=29%  Similarity=0.451  Sum_probs=28.8

Q ss_pred             cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318          177 RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       177 ~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  231 (391)
                      ...|+|..+++|++.++...                 ...|+++|+++|++.-..
T Consensus       144 ~HiNsV~~~~~G~yLiS~R~-----------------~~~i~~I~~~tG~I~W~l  181 (299)
T PF14269_consen  144 FHINSVDKDDDGDYLISSRN-----------------TSTIYKIDPSTGKIIWRL  181 (299)
T ss_pred             cEeeeeeecCCccEEEEecc-----------------cCEEEEEECCCCcEEEEe
Confidence            45688999999998887632                 457999998888775544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=93.63  E-value=4  Score=40.51  Aligned_cols=121  Identities=14%  Similarity=0.138  Sum_probs=69.6

Q ss_pred             ceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEE-eCCCCeEEEEEeccccCccceeecccCCCCCc-eEeCCCCC
Q 016318          215 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFC-EGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN-VRTNEKGE  292 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~-et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~-i~~d~~G~  292 (391)
                      -.|+.++.++....+-...-.....+.++++++-..|. .---..+..|++++      .+..+++-.|+| +..++.|+
T Consensus       251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df~egpRN~~~fnp~g~  324 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDFPEGPRNTAFFNPHGN  324 (566)
T ss_pred             ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeCCCCCccceEECCCCC
Confidence            35777777644444444444455688999998644444 33346788888776      344455555766 78899999


Q ss_pred             E-EEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeC
Q 016318          293 F-WVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLED  356 (391)
Q Consensus       293 l-wva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~  356 (391)
                      + .+|..++..--.++...  ..+|.+.++...             ...++...|+|+.+.+-..
T Consensus       325 ii~lAGFGNL~G~mEvwDv--~n~K~i~~~~a~-------------~tt~~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  325 IILLAGFGNLPGDMEVWDV--PNRKLIAKFKAA-------------NTTVFEWSPDGEYFLTATT  374 (566)
T ss_pred             EEEEeecCCCCCceEEEec--cchhhccccccC-------------CceEEEEcCCCcEEEEEec
Confidence            4 45544432211111111  125555554432             2457777888887765433

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.58  E-value=5.9  Score=36.47  Aligned_cols=109  Identities=16%  Similarity=0.148  Sum_probs=66.9

Q ss_pred             ceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCC
Q 016318          134 LGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      ..+.+.  ++..|++|+..||..+|..+....++....+-  -...+++.+..+ ..|+++-                  
T Consensus        90 ~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--~gyaygv~vsGn-~aYVadl------------------  146 (370)
T COG5276          90 ADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--DGYAYGVYVSGN-YAYVADL------------------  146 (370)
T ss_pred             heeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC--CceEEEEEecCC-EEEEeec------------------
Confidence            455664  57899999999999999876432222111100  013344444322 5888883                  


Q ss_pred             CceEEEEeCCCCeEEEeccCCCCcc----eEEEccCCCEEEEEeCCCCeEEEEEecccc
Q 016318          214 TGRVLKYDPTTKQTTVLLRNLQFPN----GLSLSKDKSFFVFCEGSVGRLHKYWLIGEK  268 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~~~~~~~n----gia~~~d~~~l~v~et~~~~I~~~~~~g~~  268 (391)
                      +.+++.+|..+-+.-++......|.    .++++  |++-|++ ..++.+...++..+.
T Consensus       147 ddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA-~~d~GL~ivDVSnp~  202 (370)
T COG5276         147 DDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVA-WRDGGLTIVDVSNPH  202 (370)
T ss_pred             cCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEE-EeCCCeEEEEccCCC
Confidence            2478888877665555554444443    46665  6678888 456789999987753

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.53  E-value=6.5  Score=38.38  Aligned_cols=63  Identities=19%  Similarity=0.258  Sum_probs=35.4

Q ss_pred             CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcc--ceeec---------------ccCCCCCceEeCCCCC-EEEEE
Q 016318          236 FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN--LEAFA---------------ILPGYPDNVRTNEKGE-FWVAI  297 (391)
Q Consensus       236 ~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~--~~~~~---------------~~~g~p~~i~~d~~G~-lwva~  297 (391)
                      .+..|.+|-|.++|||+....+.|+.|++..+..-+  .+++.               .+.|.|.=+..+-||+ +|+++
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            457788999999999999999999999999763321  11111               1345677788899998 88875


Q ss_pred             c
Q 016318          298 H  298 (391)
Q Consensus       298 ~  298 (391)
                      .
T Consensus       393 S  393 (461)
T PF05694_consen  393 S  393 (461)
T ss_dssp             -
T ss_pred             e
Confidence            4

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.45  E-value=11  Score=38.97  Aligned_cols=71  Identities=15%  Similarity=0.113  Sum_probs=42.1

Q ss_pred             CCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEE---EeCCCCeEEE-----eccCCCC-cceEEEccCCC
Q 016318          178 FTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLK---YDPTTKQTTV-----LLRNLQF-PNGLSLSKDKS  247 (391)
Q Consensus       178 ~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~---~d~~~~~~~~-----~~~~~~~-~ngia~~~d~~  247 (391)
                      .+..+...+||. +.+...                   |+|+.   .....|+.+.     +...+.. +..+.+..+++
T Consensus       449 ~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~  509 (591)
T PRK13616        449 PISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS  509 (591)
T ss_pred             CcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCE
Confidence            477888899984 555442                   23332   2233344222     3334443 47788888888


Q ss_pred             EEEEEeC-CCCeEEEEEecccc
Q 016318          248 FFVFCEG-SVGRLHKYWLIGEK  268 (391)
Q Consensus       248 ~l~v~et-~~~~I~~~~~~g~~  268 (391)
                       |++... ....++++.++|..
T Consensus       510 -L~V~~~~~~~~v~~v~vDG~~  530 (591)
T PRK13616        510 -LVVGRSDPEHPVWYVNLDGSN  530 (591)
T ss_pred             -EEEEecCCCCceEEEecCCcc
Confidence             556544 34569999999863

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.40  E-value=1.5  Score=43.19  Aligned_cols=83  Identities=20%  Similarity=0.159  Sum_probs=50.9

Q ss_pred             CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCC--eEEEEEeccccCccceeecccCCCCCceEeCCC
Q 016318          213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG--RLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK  290 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~--~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~  290 (391)
                      ++-.|+.+|..+++...+.........-.++|||+.++++....+  +|++++.+|...   +.+....+...+-..+++
T Consensus       260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~Spd  336 (425)
T COG0823         260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWSPD  336 (425)
T ss_pred             CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCCCC
Confidence            344689999988887665544433335568999999888855443  689998877432   222211122224456777


Q ss_pred             CCEEEEEc
Q 016318          291 GEFWVAIH  298 (391)
Q Consensus       291 G~lwva~~  298 (391)
                      |...+-..
T Consensus       337 G~~i~~~~  344 (425)
T COG0823         337 GDKIVFES  344 (425)
T ss_pred             CCEEEEEe
Confidence            87555433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=93.40  E-value=8.1  Score=37.47  Aligned_cols=116  Identities=13%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             ccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEE-ceec-----cCCCcccCC--------cceeecCCCCEEEEeCCC
Q 016318          132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATS-LATE-----AEGVPLRFT--------NDLDIDDEGNVYFTDSST  197 (391)
Q Consensus       132 ~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~-~~~~-----~~~~~~~~~--------~~l~~d~~G~ly~td~~~  197 (391)
                      .+.++++.+++...|=++....|.+.+..+|+... +...     ..+.++..+        -.+++.+||...++... 
T Consensus       144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~-  222 (479)
T KOG0299|consen  144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR-  222 (479)
T ss_pred             cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC-
Confidence            36688888855566666544559999888776432 2111     022222222        24788889887666522 


Q ss_pred             cccchhheeeecccCCCceEEEEeCCCCeEEEeccCCC-CcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          198 NYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       198 ~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~-~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                                      +..+..|+..+.+-.....+.. ...+++|-..-+-+|.+. ....|..+.++
T Consensus       223 ----------------d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s-~Drsvkvw~~~  274 (479)
T KOG0299|consen  223 ----------------DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS-ADRSVKVWSID  274 (479)
T ss_pred             ----------------CceEEEecCcccchhhcccccccceeeeeeecCccceeeee-cCCceEEEehh
Confidence                            3356688888876544433322 345677765544477763 44556665543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=93.32  E-value=7.8  Score=37.04  Aligned_cols=99  Identities=14%  Similarity=0.108  Sum_probs=59.5

Q ss_pred             CccceEEEecCCCcEEEEECCCC-eEEEeCC--------C-----CeeEEceeccCCCcccCCcceeecCCCCEEEEeCC
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPE--------G-----GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS  196 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~--------~-----g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~  196 (391)
                      ....+++|++ +|+|.......| ++..-..        +     .+......... ....-+++++-.++++..++.+.
T Consensus        66 ~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~l~s~s~  143 (434)
T KOG1009|consen   66 RAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNFLVSGSV  143 (434)
T ss_pred             ceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCceeeeeec
Confidence            3467889998 788887755555 3332211        2     00000000001 11234677777888877666543


Q ss_pred             CcccchhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCE
Q 016318          197 TNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSF  248 (391)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~  248 (391)
                                       +..++.||...|+..... +.-.+++|++++|-+++
T Consensus       144 -----------------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy  179 (434)
T KOG1009|consen  144 -----------------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY  179 (434)
T ss_pred             -----------------cceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence                             457788888888876654 44568999999987763

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.26  E-value=9.6  Score=37.93  Aligned_cols=231  Identities=14%  Similarity=0.137  Sum_probs=117.5

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ....++..+++|+.|-+|+.+|.+..||..........                   ......|.-.++..   ..++.+
T Consensus       218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~-------------------~~~h~~rvg~laW~---~~~lss  275 (484)
T KOG0305|consen  218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL-------------------RGSHASRVGSLAWN---SSVLSS  275 (484)
T ss_pred             CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc-------------------cCCcCceeEEEecc---CceEEE
Confidence            56778889999999999999999999987622211111                   00012333344442   334333


Q ss_pred             ECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          149 DAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       149 d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      -.. .-|...|....+  .+.....+ .-....++...+||+...+..                 .++++..||..+.+.
T Consensus       276 Gsr~~~I~~~dvR~~~--~~~~~~~~-H~qeVCgLkws~d~~~lASGg-----------------nDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  276 GSRDGKILNHDVRISQ--HVVSTLQG-HRQEVCGLKWSPDGNQLASGG-----------------NDNVVFIWDGLSPEP  335 (484)
T ss_pred             ecCCCcEEEEEEecch--hhhhhhhc-ccceeeeeEECCCCCeeccCC-----------------CccceEeccCCCccc
Confidence            333 337777665432  11110010 112467888888887655542                 256788888744333


Q ss_pred             EE-eccCCCCcceEEEccCCCEEEEEe-CCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCchhh
Q 016318          228 TV-LLRNLQFPNGLSLSKDKSFFVFCE-GSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYS  305 (391)
Q Consensus       228 ~~-~~~~~~~~ngia~~~d~~~l~v~e-t~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~  305 (391)
                      .. +.+.....-.++++|-..-|+.+. ....+.+++|-.-  .+...--.+--+..-++...+..+=.+++++-     
T Consensus       336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~--~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~-----  408 (484)
T KOG0305|consen  336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN--TGARIDSVDTGSQVCSLIWSKKYKELLSTHGY-----  408 (484)
T ss_pred             cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC--CCcEecccccCCceeeEEEcCCCCEEEEecCC-----
Confidence            22 222233445678888655455443 2345666666211  12111111112345667777777655655542     


Q ss_pred             hhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeC
Q 016318          306 HLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLED  356 (391)
Q Consensus       306 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~  356 (391)
                            +...-.+.+.|....  .....+...+.+-+..+|+|+.+.+-..
T Consensus       409 ------s~n~i~lw~~ps~~~--~~~l~gH~~RVl~la~SPdg~~i~t~a~  451 (484)
T KOG0305|consen  409 ------SENQITLWKYPSMKL--VAELLGHTSRVLYLALSPDGETIVTGAA  451 (484)
T ss_pred             ------CCCcEEEEeccccce--eeeecCCcceeEEEEECCCCCEEEEecc
Confidence                  122222333322110  0011222444566677889887776543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.09  E-value=0.93  Score=48.33  Aligned_cols=211  Identities=16%  Similarity=0.181  Sum_probs=106.3

Q ss_pred             eeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC-eEEEeCC
Q 016318           82 GPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPE  160 (391)
Q Consensus        82 ~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~  160 (391)
                      +|..|..||.|..|++..+  +....   .....         ......|..+|+.|.+..++|..+.+..| |+..|..
T Consensus        82 lIaGG~edG~I~ly~p~~~--~~~~~---~~~la---------~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln  147 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASI--IANAS---EEVLA---------TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN  147 (1049)
T ss_pred             eeeccccCCceEEecchhh--ccCcc---hHHHh---------hhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence            3677889999999988732  11000   00000         01112477889999986666777766666 9988876


Q ss_pred             CCeeEEceeccCCCcccCCcceeecC-C---CCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCC--
Q 016318          161 GGLATSLATEAEGVPLRFTNDLDIDD-E---GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL--  234 (391)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~~l~~d~-~---G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--  234 (391)
                      .-+ +.+.   .+ ....+.+|..-. +   -+|+.                 .+..+|+...+|.+.++...-....  
T Consensus       148 n~~-tP~~---~~-~~~~~~eI~~lsWNrkvqhILA-----------------S~s~sg~~~iWDlr~~~pii~ls~~~~  205 (1049)
T KOG0307|consen  148 KPE-TPFT---PG-SQAPPSEIKCLSWNRKVSHILA-----------------SGSPSGRAVIWDLRKKKPIIKLSDTPG  205 (1049)
T ss_pred             CcC-CCCC---CC-CCCCcccceEeccchhhhHHhh-----------------ccCCCCCceeccccCCCcccccccCCC
Confidence            421 1111   01 112333332211 1   12222                 3345789999998765332222221  


Q ss_pred             -CCcceEEEccCCCEEEEEeCCCCe---EEEEEeccccCccceeecc-cCCCCCceEeCCCC-CEEEEEcCCCchhhhhh
Q 016318          235 -QFPNGLSLSKDKSFFVFCEGSVGR---LHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKG-EFWVAIHCRRSLYSHLM  308 (391)
Q Consensus       235 -~~~ngia~~~d~~~l~v~et~~~~---I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~l  308 (391)
                       ..-++++++||...-.+..+...+   |...++.-. ..-.+++.. ..| .-.+.....+ ++.++.....+++.   
T Consensus       206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-ssP~k~~~~H~~G-ilslsWc~~D~~lllSsgkD~~ii~---  280 (1049)
T KOG0307|consen  206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-SSPLKILEGHQRG-ILSLSWCPQDPRLLLSSGKDNRIIC---  280 (1049)
T ss_pred             ccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-CCchhhhcccccc-eeeeccCCCCchhhhcccCCCCeeE---
Confidence             235689999997653333343332   333333211 111222211 111 2223333444 45555555444322   


Q ss_pred             hcCccceeeeeecCccceeeeEEeec
Q 016318          309 ALYPKIRHFLLKLPISAKTHYLIHVG  334 (391)
Q Consensus       309 ~~~~~~~~~~~~l~~~~~~~~~~~~~  334 (391)
                       -++..++.+..+|....+.+.+.+.
T Consensus       281 -wN~~tgEvl~~~p~~~nW~fdv~w~  305 (1049)
T KOG0307|consen  281 -WNPNTGEVLGELPAQGNWCFDVQWC  305 (1049)
T ss_pred             -ecCCCceEeeecCCCCcceeeeeec
Confidence             3666788888888866665555444

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=92.92  E-value=7  Score=35.43  Aligned_cols=155  Identities=16%  Similarity=0.123  Sum_probs=92.4

Q ss_pred             cceEEEccC-CCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           71 PESMAFDPL-GRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        71 Pe~i~~d~~-G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      --+++..|- |.+++++..+..|..++..   .+.-......                   ...-....+++.| .|++.
T Consensus        17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------------------~hkrsVRsvAwsp-~g~~L   76 (312)
T KOG0645|consen   17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------------------GHKRSVRSVAWSP-HGRYL   76 (312)
T ss_pred             EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-------------------cchheeeeeeecC-CCcEE
Confidence            447888876 8888888888877777654   2222211110                   0112245778888 67755


Q ss_pred             EEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC-CC
Q 016318          147 IADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP-TT  224 (391)
Q Consensus       147 V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~-~~  224 (391)
                      ++-++.. +..+....+.++-+.. .+|. -+-.-.++..++|++..+-+.                 +..|+.+.. ++
T Consensus        77 a~aSFD~t~~Iw~k~~~efecv~~-lEGH-EnEVK~Vaws~sG~~LATCSR-----------------DKSVWiWe~ded  137 (312)
T KOG0645|consen   77 ASASFDATVVIWKKEDGEFECVAT-LEGH-ENEVKCVAWSASGNYLATCSR-----------------DKSVWIWEIDED  137 (312)
T ss_pred             EEeeccceEEEeecCCCceeEEee-eecc-ccceeEEEEcCCCCEEEEeeC-----------------CCeEEEEEecCC
Confidence            5544444 3333333455555432 2332 245667899999998777643                 234444432 23


Q ss_pred             CeEE---EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          225 KQTT---VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       225 ~~~~---~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      .+.+   ++.+..+..-.+.++|-+. |+++-+..+.|..|+-.
T Consensus       138 dEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  138 DEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             CcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeec
Confidence            3433   3344456667899999888 77887888888888754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=92.83  E-value=7.8  Score=35.69  Aligned_cols=109  Identities=14%  Similarity=0.043  Sum_probs=73.3

Q ss_pred             cceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccC
Q 016318          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      ...+.|++..+.|.|+.+...|..++..+...+.....  +.   ..-+.++.++-++|+++.                 
T Consensus        16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~---plL~c~F~d~~~~~~G~~-----------------   73 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--GA---PLLDCAFADESTIVTGGL-----------------   73 (323)
T ss_pred             eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--CC---ceeeeeccCCceEEEecc-----------------
Confidence            34678887678899998877777777665433322221  11   123456666667877763                 


Q ss_pred             CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                       +|.|.+||.++++..++........+|...+-.. ..++.....+|..++..
T Consensus        74 -dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   74 -DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPR  124 (323)
T ss_pred             -CceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecc
Confidence             4889999999998888766655666777765554 56776777888887744

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=92.80  E-value=8.8  Score=36.26  Aligned_cols=97  Identities=16%  Similarity=0.245  Sum_probs=62.0

Q ss_pred             cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCC
Q 016318          177 RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS  255 (391)
Q Consensus       177 ~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~  255 (391)
                      .....|.-.+||..|++.+-                ++..+..+|+++++-..+. .++..-.-+-++||+++++.+ +.
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA-t~  258 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA-TC  258 (445)
T ss_pred             ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe-cc
Confidence            34566777888999888643                2457889999998877665 344444456799999965544 54


Q ss_pred             CCeEEEEEeccccCccceeecccCCCCCceEeCCCCC
Q 016318          256 VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  292 (391)
Q Consensus       256 ~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~  292 (391)
                       .++.++|.... .-+.|.+.-.+|....-+-++.|.
T Consensus       259 -davfrlw~e~q-~wt~erw~lgsgrvqtacWspcGs  293 (445)
T KOG2139|consen  259 -DAVFRLWQENQ-SWTKERWILGSGRVQTACWSPCGS  293 (445)
T ss_pred             -cceeeeehhcc-cceecceeccCCceeeeeecCCCC
Confidence             46677763321 223344444456555566778887

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.67  E-value=16  Score=38.78  Aligned_cols=128  Identities=21%  Similarity=0.260  Sum_probs=83.5

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      |....-.++.++|.-+++...+.|+.|..||..   .+..|..                       ..+|=+-++.+| .
T Consensus       248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr-----------------------endRFW~laahP-~  303 (1202)
T KOG0292|consen  248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR-----------------------ENDRFWILAAHP-E  303 (1202)
T ss_pred             cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec-----------------------cCCeEEEEEecC-C
Confidence            556677899999988988889999999999887   3333322                       146667788888 7


Q ss_pred             CcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          143 GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       143 g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      .+||.|....|+.+|-.+-.                .-..++..++-+|+-+                    ..+..||-
T Consensus       304 lNLfAAgHDsGm~VFkleRE----------------rpa~~v~~n~LfYvkd--------------------~~i~~~d~  347 (1202)
T KOG0292|consen  304 LNLFAAGHDSGMIVFKLERE----------------RPAYAVNGNGLFYVKD--------------------RFIRSYDL  347 (1202)
T ss_pred             cceeeeecCCceEEEEEccc----------------CceEEEcCCEEEEEcc--------------------ceEEeeec
Confidence            89999988888666543311                1123444444455544                    36777777


Q ss_pred             CCCeEEEec---cC---CCCcceEEEccCCCEEEEEe
Q 016318          223 TTKQTTVLL---RN---LQFPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       223 ~~~~~~~~~---~~---~~~~ngia~~~d~~~l~v~e  253 (391)
                      .+.+-..+.   ..   ...|..+...|.++.+.++.
T Consensus       348 ~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics  384 (1202)
T KOG0292|consen  348 RTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICS  384 (1202)
T ss_pred             cccccceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence            664333322   11   13456788888888777773

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=92.65  E-value=7.5  Score=35.04  Aligned_cols=95  Identities=17%  Similarity=0.303  Sum_probs=55.5

Q ss_pred             eEEEeCCCCeeEEceec--cCCCcccCCcceee--cCC-CCEEEEeCCCcccchhheeeecccCCCceEEEE---eCCCC
Q 016318          154 LMKVGPEGGLATSLATE--AEGVPLRFTNDLDI--DDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY---DPTTK  225 (391)
Q Consensus       154 l~~~d~~~g~~~~~~~~--~~~~~~~~~~~l~~--d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~---d~~~~  225 (391)
                      ++.+|++++.++.+...  .....++.+++++.  ++. |.+|+-.+.                +.|-+-.|   |...|
T Consensus       128 ~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~----------------~qG~~~Qy~l~d~gnG  191 (364)
T COG4247         128 FYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNR----------------RQGDIAQYKLIDQGNG  191 (364)
T ss_pred             EEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEec----------------CCCceeEEEEEecCCc
Confidence            78899998887777644  22234567888876  343 777766532                12333333   22333


Q ss_pred             eEE-EeccCCCC---cceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          226 QTT-VLLRNLQF---PNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       226 ~~~-~~~~~~~~---~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      ++. .+...+.+   ..|+..+..-.+||++|. .-.||+|..+
T Consensus       192 kv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Ae  234 (364)
T COG4247         192 KVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE-DVAIWKYEAE  234 (364)
T ss_pred             eEcceeeEeeecCCcccceeeccccceEEEeec-cceeeecccC
Confidence            322 22233333   346666655556999975 5689999865

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=92.64  E-value=0.17  Score=27.71  Aligned_cols=17  Identities=12%  Similarity=0.474  Sum_probs=13.4

Q ss_pred             CCceEeCCCCCEEEEEc
Q 016318          282 PDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       282 p~~i~~d~~G~lwva~~  298 (391)
                      ...|..|++|++|+++.
T Consensus         7 I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    7 IYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEEEE-TTSCEEEEET
T ss_pred             EEEEEEcCCcCEEEEeC
Confidence            34688999999999975

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PHA02713 hypothetical protein; Provisional

Probab=92.62  E-value=7  Score=40.05  Aligned_cols=146  Identities=8%  Similarity=0.017  Sum_probs=70.8

Q ss_pred             CCcEEEEECCC------CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCccc---chhheeee---c
Q 016318          142 TGDLYIADAYF------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQ---RRNFMQLV---F  209 (391)
Q Consensus       142 ~g~L~V~d~~~------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~---~~~~~~~~---~  209 (391)
                      +|.|||.....      .+.++|+.+++.+.+......   ..-.+++ .-+|.||+....+...   ...+...+   .
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~---r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA---LSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc---cccccEE-EECCEEEEEeCCCcccccccccccccccccc
Confidence            67898865432      278899998887765432111   1111222 2378999986321100   00000000   0


Q ss_pred             ccCCCceEEEEeCCCCeEEEeccCCC---CcceEEEccCCCEEEEEeCCC------CeEEEEEeccccCccceeecccCC
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLLRNLQ---FPNGLSLSKDKSFFVFCEGSV------GRLHKYWLIGEKAGNLEAFAILPG  280 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~~~~~---~~ngia~~~d~~~l~v~et~~------~~I~~~~~~g~~~g~~~~~~~~~g  280 (391)
                      .......+.+|||.+.+...+.. +.   ...+++.- +++ ||+.-..+      ..+.+|+....  .+.+....+|.
T Consensus       427 ~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~--~~W~~~~~m~~  501 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVSH-KDD-IYVVCDIKDEKNVKTCIFRYNTNTY--NGWELITTTES  501 (557)
T ss_pred             cccccceEEEECCCCCeEeecCC-CCcccccCcEEEE-CCE-EEEEeCCCCCCccceeEEEecCCCC--CCeeEccccCc
Confidence            00113569999999998876542 22   22234332 455 88874321      24667764320  23333333331


Q ss_pred             --CCCceEeCCCCCEEEEE
Q 016318          281 --YPDNVRTNEKGEFWVAI  297 (391)
Q Consensus       281 --~p~~i~~d~~G~lwva~  297 (391)
                        .--+++. -+|.+|+.-
T Consensus       502 ~r~~~~~~~-~~~~iyv~G  519 (557)
T PHA02713        502 RLSALHTIL-HDNTIMMLH  519 (557)
T ss_pred             ccccceeEE-ECCEEEEEe
Confidence              1123333 366788743

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=92.58  E-value=1.3  Score=39.40  Aligned_cols=134  Identities=18%  Similarity=0.160  Sum_probs=65.5

Q ss_pred             cchhccccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCC-----ceeE-EEeecCCCcccCCCCCCccccccc
Q 016318           53 DKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-----KWTD-FAFTSNNRSELCNPKPIATSYLKN  126 (391)
Q Consensus        53 ~~~~l~~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  126 (391)
                      .++.+...+++..++...=..|++++.|- ||+-..+|.++|....     .|.. .+.                   ..
T Consensus        65 ~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~-LYaV~~~G~lyR~~~~~~~~~~W~~~~~~-------------------~i  124 (229)
T PF14517_consen   65 GNTWDSGSKQIGDGGWNSFKFIFFDPTGV-LYAVTPDGKLYRHPRPTNGSDNWIGGSGK-------------------KI  124 (229)
T ss_dssp             T--HHHH-EEEE-S-GGG-SEEEE-TTS--EEEEETT-EEEEES---STT--HHH-HSE-------------------EE
T ss_pred             cccccccCcccccCcccceeEEEecCCcc-EEEeccccceeeccCCCccCcchhhccce-------------------ec
Confidence            33445667778777333334999999997 9999999999988554     1210 000                   01


Q ss_pred             -cCccCccceEEEecCCCcEEEEECCCCeEEE-eCCCCeeEEce--eccCCCcccCCcceeecCCCCEEEEeCCCcccch
Q 016318          127 -EHICGRPLGLRFDKKTGDLYIADAYFGLMKV-GPEGGLATSLA--TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR  202 (391)
Q Consensus       127 -~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~-d~~~g~~~~~~--~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~  202 (391)
                       .........+.+++ +|.||+-+...-+++. .+.++.-+=+.  ....+.....+.-|...++|+||..++       
T Consensus       125 G~~GW~~f~~vfa~~-~GvLY~i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~-------  196 (229)
T PF14517_consen  125 GGTGWNDFDAVFAGP-NGVLYAITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS-------  196 (229)
T ss_dssp             E-SSGGGEEEEEE-T-TS-EEEEETTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E-------
T ss_pred             ccCCCccceEEEeCC-CccEEEEcCCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEec-------
Confidence             11234456777887 7889988755446666 34332111000  011111122355677888999999864       


Q ss_pred             hheeeecccCCCceEEEEeCCCC
Q 016318          203 NFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       203 ~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                                 +|.|+|+.+.+.
T Consensus       197 -----------~G~lyr~~~p~~  208 (229)
T PF14517_consen  197 -----------NGKLYRGRPPQN  208 (229)
T ss_dssp             -----------TTEEEEES---S
T ss_pred             -----------CCEEeccCCccc
Confidence                       488999876553

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=92.39  E-value=3.9  Score=40.79  Aligned_cols=160  Identities=13%  Similarity=0.172  Sum_probs=90.2

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .|-+.+-..++-+|+.+|.+-.||+.   .+..+-....   -...         ......-.+..+.|+.++=++-|+.
T Consensus       180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~---v~s~---------pg~~~~~svTal~F~d~gL~~aVGt  247 (703)
T KOG2321|consen  180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS---VNSH---------PGGDAAPSVTALKFRDDGLHVAVGT  247 (703)
T ss_pred             eeeecCccceEEecccCceEEEecchhhhhheeeecccc---cCCC---------ccccccCcceEEEecCCceeEEeec
Confidence            44555666667888889999999886   2222211100   0000         0011123467888875222456666


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                      +...++.+|..+.+--.+..+..+.++.....+..+....++-.|.                   ..+-.||+.+|+...
T Consensus       248 s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk-------------------~~~kiWd~~~Gk~~a  308 (703)
T KOG2321|consen  248 STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK-------------------RILKIWDECTGKPMA  308 (703)
T ss_pred             cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecch-------------------HHhhhcccccCCcee
Confidence            5556999998876433332333333333322222232334444442                   134458999999888


Q ss_pred             eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318          230 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  264 (391)
Q Consensus       230 ~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~  264 (391)
                      ..+....-|.+|+-|+...++++ ..+..+.-|.+
T Consensus       309 siEpt~~lND~C~~p~sGm~f~A-ne~~~m~~yyi  342 (703)
T KOG2321|consen  309 SIEPTSDLNDFCFVPGSGMFFTA-NESSKMHTYYI  342 (703)
T ss_pred             eccccCCcCceeeecCCceEEEe-cCCCcceeEEc
Confidence            88887788999998988856555 44556666654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=92.35  E-value=10  Score=35.88  Aligned_cols=208  Identities=15%  Similarity=0.130  Sum_probs=103.1

Q ss_pred             CccceEEEecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318          131 GRPLGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      ..+.-++++.++..+||.+..  ..|-++|.+.+++-.-. ..+|     +..+.-..+..++ +               
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei-~~PG-----C~~iyP~~~~~F~-~---------------  152 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI-DTPG-----CWLIYPSGNRGFS-M---------------  152 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE-EGTS-----EEEEEEEETTEEE-E---------------
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee-cCCC-----EEEEEecCCCceE-E---------------
Confidence            445667887756678998765  45889998877653211 1111     1111111111211 1               


Q ss_pred             cccCCCceEEEE--eCCCCeEEEe---ccCC---CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceee---cc
Q 016318          209 FSAEDTGRVLKY--DPTTKQTTVL---LRNL---QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF---AI  277 (391)
Q Consensus       209 ~~~~~~g~l~~~--d~~~~~~~~~---~~~~---~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~---~~  277 (391)
                        ..++|++..+  |.+++.....   ....   .+-+. +.+.++..+|+. +.++.|+-.++.|....-...+   .+
T Consensus       153 --lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~-~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~  228 (342)
T PF06433_consen  153 --LCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP-AYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGKPWSLLTD  228 (342)
T ss_dssp             --EETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S---EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEEEEESS-H
T ss_pred             --EecCCceEEEEECCCCCEeEeeccccCCCCccccccc-ceECCCCeEEEE-ecCCEEEEEeccCCcccccCcccccCc
Confidence              1224665543  4333332111   1111   12222 233344445555 6788999999988642211222   11


Q ss_pred             -------cCCCCCceEeC-CCCCEEEEEcCCCchhh-----hhhhcCccceeeeeecCccceeeeEEeecCccceEEEEE
Q 016318          278 -------LPGYPDNVRTN-EKGEFWVAIHCRRSLYS-----HLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKY  344 (391)
Q Consensus       278 -------~~g~p~~i~~d-~~G~lwva~~~~~~~~~-----~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~  344 (391)
                             .||.=.-++.+ +.|++||.++.+..--+     .........++.+.+++.... ..++.+.....+.++.+
T Consensus       229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~  307 (342)
T PF06433_consen  229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDKPLLYAL  307 (342)
T ss_dssp             HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS-EEEEE
T ss_pred             cccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-cceEEEccCCCcEEEEE
Confidence                   23322337776 46679998764321100     012224456778888876532 33566666677888888


Q ss_pred             CCCCCEEEEEeCCCCCeeece
Q 016318          345 SPEGKILQVLEDSKGKVVKAI  365 (391)
Q Consensus       345 d~~g~~~~~~~~~~g~~~~~i  365 (391)
                      +.....+.+|...+|+..+.+
T Consensus       308 ~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  308 SAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             ETTTTEEEEEETTT--EEEEE
T ss_pred             cCCCCeEEEEeCcCCcEEeeh
Confidence            876667888888888765544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.28  E-value=15  Score=37.81  Aligned_cols=109  Identities=12%  Similarity=0.036  Sum_probs=56.7

Q ss_pred             cceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCe
Q 016318          180 NDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR  258 (391)
Q Consensus       180 ~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~  258 (391)
                      ..-..+++| .||+...+..      +.-+......+.++..+.+.++...  ..-.....+.++|||..+.+.-  .++
T Consensus       400 t~PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~  469 (591)
T PRK13616        400 TRPSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGK  469 (591)
T ss_pred             CCceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCE
Confidence            334677884 6888753211      1111112234566666665555543  1112467899999999888764  357


Q ss_pred             EEEEEeccccCcccee-----ec-ccCCCCCceEeCCCCCEEEEEc
Q 016318          259 LHKYWLIGEKAGNLEA-----FA-ILPGYPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       259 I~~~~~~g~~~g~~~~-----~~-~~~g~p~~i~~d~~G~lwva~~  298 (391)
                      |+..-+.-...|..+.     .. .+...+.++.--.++.|.++..
T Consensus       470 v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~  515 (591)
T PRK13616        470 VYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRS  515 (591)
T ss_pred             EEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEec
Confidence            7773332222232222     11 1222235566666777776644

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=92.13  E-value=4.4  Score=37.65  Aligned_cols=50  Identities=10%  Similarity=-0.000  Sum_probs=35.5

Q ss_pred             ceEEEEeCCCCeEEEe------ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          215 GRVLKYDPTTKQTTVL------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~------~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .-|..+|.-+|+.+.-      .+....+..++|+|||..||..  .+++|..++..-
T Consensus       133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--ykrcirvFdt~R  188 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--YKRCIRVFDTSR  188 (406)
T ss_pred             CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--ccceEEEeeccC
Confidence            3466677777776543      2345567899999999977654  477899998753

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=92.07  E-value=2.9  Score=40.59  Aligned_cols=99  Identities=8%  Similarity=0.118  Sum_probs=53.8

Q ss_pred             eeecccCCCceEEEEeCCCCeEEEec-----------cCCCCcceEEEccCCCEEEEEeCC-CCeEEEEEeccccCccce
Q 016318          206 QLVFSAEDTGRVLKYDPTTKQTTVLL-----------RNLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIGEKAGNLE  273 (391)
Q Consensus       206 ~~~~~~~~~g~l~~~d~~~~~~~~~~-----------~~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~g~~~g~~~  273 (391)
                      .++|..+|.+.|+..--..|.+..+-           ......++||++++|+++  +.++ .+++..+++..-  -+..
T Consensus       254 ~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YM--aTtG~Dr~~kIWDlR~~--~ql~  329 (545)
T KOG1272|consen  254 TDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYM--ATTGLDRKVKIWDLRNF--YQLH  329 (545)
T ss_pred             cchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEE--eecccccceeEeeeccc--cccc
Confidence            34455555555554444444443332           122345799999999844  3343 345555555432  1222


Q ss_pred             eecccCCCCCceEeCCCCCEEEEEcCCCchhhhhhh
Q 016318          274 AFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMA  309 (391)
Q Consensus       274 ~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~  309 (391)
                      .+.. |-...+++++..|.+-++.......+.|++.
T Consensus       330 t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~  364 (545)
T KOG1272|consen  330 TYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALK  364 (545)
T ss_pred             eeec-CCCccccccccccceeeecCCeeeeehhhhc
Confidence            2222 3234578888888777776665555655554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=91.80  E-value=6.7  Score=39.98  Aligned_cols=144  Identities=10%  Similarity=0.089  Sum_probs=73.9

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .-+++....++. +.+|++|..+.+|...+...          .|.            ........+..-+ ++.+.-+.
T Consensus       103 nVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~----------~l~------------gH~asVWAv~~l~-e~~~vTgs  158 (745)
T KOG0301|consen  103 NVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY----------SLQ------------GHTASVWAVASLP-ENTYVTGS  158 (745)
T ss_pred             ceeeeecCCcCc-eEecccccceEEecchhhhc----------ccC------------CcchheeeeeecC-CCcEEecc
Confidence            345666666776 78888888777774432110          011            1112234555555 45333344


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                      +.+-|..+.-. ..++++..+     ....+++++-+++.+.=++                  .+|.|..++.++.-+..
T Consensus       159 aDKtIklWk~~-~~l~tf~gH-----tD~VRgL~vl~~~~flScs------------------NDg~Ir~w~~~ge~l~~  214 (745)
T KOG0301|consen  159 ADKTIKLWKGG-TLLKTFSGH-----TDCVRGLAVLDDSHFLSCS------------------NDGSIRLWDLDGEVLLE  214 (745)
T ss_pred             CcceeeeccCC-chhhhhccc-----hhheeeeEEecCCCeEeec------------------CCceEEEEeccCceeee
Confidence            44445555432 233433222     2367788887775543322                  14667778775544444


Q ss_pred             eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          230 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       230 ~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                      ....-.+-..+....++. ++++ ++..|=.|+|
T Consensus       215 ~~ghtn~vYsis~~~~~~-~Ivs-~gEDrtlriW  246 (745)
T KOG0301|consen  215 MHGHTNFVYSISMALSDG-LIVS-TGEDRTLRIW  246 (745)
T ss_pred             eeccceEEEEEEecCCCC-eEEE-ecCCceEEEe
Confidence            444445666676444444 5555 3334444554

>PHA03098 kelch-like protein; Provisional

Probab=91.70  E-value=11  Score=38.42  Aligned_cols=77  Identities=13%  Similarity=0.132  Sum_probs=43.6

Q ss_pred             CCcEEEEECC-------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318          142 TGDLYIADAY-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       142 ~g~L~V~d~~-------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ++.+||....       +.+.++|+.+++.+.+......   .. ..-++.-+|.||+....+....         ....
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~---r~-~~~~~~~~~~iyv~GG~~~~~~---------~~~~  455 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS---HY-GGCAIYHDGKIYVIGGISYIDN---------IKVY  455 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc---cc-CceEEEECCEEEEECCccCCCC---------Cccc
Confidence            6789986431       2388999998887765321111   11 1122333678998763210000         0012


Q ss_pred             ceEEEEeCCCCeEEEec
Q 016318          215 GRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~  231 (391)
                      ..+++||+.+++.+.+.
T Consensus       456 ~~v~~yd~~~~~W~~~~  472 (534)
T PHA03098        456 NIVESYNPVTNKWTELS  472 (534)
T ss_pred             ceEEEecCCCCceeeCC
Confidence            34899999999887764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.67  E-value=4.9  Score=38.37  Aligned_cols=73  Identities=22%  Similarity=0.315  Sum_probs=48.5

Q ss_pred             ccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC--CCCcceEEEccCCCEEEEEe
Q 016318          176 LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       176 ~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~ngia~~~d~~~l~v~e  253 (391)
                      +.....|+++.+|++..-.+.                 +|.|..|+..+-+.-.+...  ..+..+++|+||.+.+ ..-
T Consensus       281 ~~siSsl~VS~dGkf~AlGT~-----------------dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~-~sv  342 (398)
T KOG0771|consen  281 FKSISSLAVSDDGKFLALGTM-----------------DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL-ASV  342 (398)
T ss_pred             cCcceeEEEcCCCcEEEEecc-----------------CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc-ccc
Confidence            446788999999987665433                 57888898776665555433  2377899999998843 233


Q ss_pred             CCCCeEEEEEecc
Q 016318          254 GSVGRLHKYWLIG  266 (391)
Q Consensus       254 t~~~~I~~~~~~g  266 (391)
                      +...++....+..
T Consensus       343 Ss~~~~~v~~l~v  355 (398)
T KOG0771|consen  343 SSDNEAAVTKLAV  355 (398)
T ss_pred             ccCCceeEEEEee
Confidence            3445555555444

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=91.64  E-value=5.1  Score=41.74  Aligned_cols=154  Identities=19%  Similarity=0.251  Sum_probs=85.5

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF  152 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~  152 (391)
                      ..++.++++.+-++..+|+|..|..-..       .+....|+.       +.+  ......++.|+.++..||=|. ..
T Consensus       210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~~~~~t~t~-------lHW--H~~~V~~L~fS~~G~~LlSGG-~E  272 (792)
T KOG1963|consen  210 CVALSPNERYLAAGDSDGRILVWRDFGS-------SDDSETCTL-------LHW--HHDEVNSLSFSSDGAYLLSGG-RE  272 (792)
T ss_pred             eEEeccccceEEEeccCCcEEEEecccc-------ccccccceE-------EEe--cccccceeEEecCCceEeecc-cc
Confidence            5678889998888888999988843210       011111110       001  012356788988444555543 23


Q ss_pred             C-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318          153 G-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       153 g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  231 (391)
                      | +.+....|++.+.+ ....    ...-++++.+|+++|-.-..                 ++.+......+-+.+.-.
T Consensus       273 ~VLv~Wq~~T~~kqfL-PRLg----s~I~~i~vS~ds~~~sl~~~-----------------DNqI~li~~~dl~~k~tI  330 (792)
T KOG1963|consen  273 GVLVLWQLETGKKQFL-PRLG----SPILHIVVSPDSDLYSLVLE-----------------DNQIHLIKASDLEIKSTI  330 (792)
T ss_pred             eEEEEEeecCCCcccc-cccC----CeeEEEEEcCCCCeEEEEec-----------------CceEEEEeccchhhhhhc
Confidence            4 66667777773333 2222    23567888999988876532                 234444433332222211


Q ss_pred             cC------------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          232 RN------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       232 ~~------------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .+            -.++.+++++|.-+.+.+ ....++|.-|++-.
T Consensus       331 sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl-n~~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  331 SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL-NGHPGHVQFYDLYT  376 (792)
T ss_pred             cCccCCCccccccccccceeEEEcCCCCceee-cCCCceEEEEeccc
Confidence            11            235678999985443333 35677888887654

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=91.54  E-value=0.27  Score=26.92  Aligned_cols=20  Identities=15%  Similarity=0.205  Sum_probs=15.8

Q ss_pred             ccCCcceeecCCCCEEEEeC
Q 016318          176 LRFTNDLDIDDEGNVYFTDS  195 (391)
Q Consensus       176 ~~~~~~l~~d~~G~ly~td~  195 (391)
                      ....+.|..|++|+||+++.
T Consensus         4 ~n~I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    4 NNNIYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             SSCEEEEEE-TTSCEEEEET
T ss_pred             CCeEEEEEEcCCcCEEEEeC
Confidence            34678899999999999973

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=91.40  E-value=13  Score=35.12  Aligned_cols=158  Identities=17%  Similarity=0.072  Sum_probs=87.2

Q ss_pred             cccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      .|-+.+-.++++||-+..+.+|+.|+.|-.||-..-....... +                   ......|+++++..--
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt-G-------------------hi~~vr~vavS~rHpY  207 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT-G-------------------HIETVRGVAVSKRHPY  207 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-c-------------------hhheeeeeeecccCce
Confidence            4556688999999976644557778888888765111111110 0                   1233457888863223


Q ss_pred             EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      |+-+...+-+-++|...+++-+   ...| .+.....++..|.-.+.++.+.                 +..+-.+|..+
T Consensus       208 lFs~gedk~VKCwDLe~nkvIR---~YhG-HlS~V~~L~lhPTldvl~t~gr-----------------Dst~RvWDiRt  266 (460)
T KOG0285|consen  208 LFSAGEDKQVKCWDLEYNKVIR---HYHG-HLSGVYCLDLHPTLDVLVTGGR-----------------DSTIRVWDIRT  266 (460)
T ss_pred             EEEecCCCeeEEEechhhhhHH---Hhcc-ccceeEEEeccccceeEEecCC-----------------cceEEEeeecc
Confidence            4444333448888887664322   1112 2445677888887777777643                 33455677776


Q ss_pred             CeEEEeccCCC-CcceEEEcc-CCCEEEEEeCCCCeEEEEEec
Q 016318          225 KQTTVLLRNLQ-FPNGLSLSK-DKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       225 ~~~~~~~~~~~-~~ngia~~~-d~~~l~v~et~~~~I~~~~~~  265 (391)
                      +.....+.+-. ..+.|...| |.+ ++-+ +....|..+++.
T Consensus       267 r~~V~~l~GH~~~V~~V~~~~~dpq-vit~-S~D~tvrlWDl~  307 (460)
T KOG0285|consen  267 RASVHVLSGHTNPVASVMCQPTDPQ-VITG-SHDSTVRLWDLR  307 (460)
T ss_pred             cceEEEecCCCCcceeEEeecCCCc-eEEe-cCCceEEEeeec
Confidence            65443333322 223444433 555 5443 445566666654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=91.38  E-value=17  Score=36.49  Aligned_cols=175  Identities=21%  Similarity=0.254  Sum_probs=95.7

Q ss_pred             cccCcc---eEEEccCCCeeE-EEecCCEEEEEeCC----c--------eeEEEeecCCCcccCCCCCCccccccccCcc
Q 016318           67 QIQGPE---SMAFDPLGRGPY-TGVADGRILFWDGL----K--------WTDFAFTSNNRSELCNPKPIATSYLKNEHIC  130 (391)
Q Consensus        67 ~~~gPe---~i~~d~~G~~ly-~~~~~g~I~~~~~~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (391)
                      ++..|+   .|-+.+||..++ +|++.-+|-+++-.    +        ...|...++..+..|--  ...+.+..-...
T Consensus        47 dfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L--~~DR~IefHak~  124 (703)
T KOG2321|consen   47 DFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFL--QNDRTIEFHAKY  124 (703)
T ss_pred             hcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEe--ecCceeeehhhc
Confidence            355554   567889999554 46777778777654    1        22232233322222100  000111111112


Q ss_pred             Cc------c---ceEEEecCCCcEEEEECCCCeEEEeCCCCeeE-EceeccCCCcccCCcceeecCCCCEEEEeCCCccc
Q 016318          131 GR------P---LGLRFDKKTGDLYIADAYFGLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQ  200 (391)
Q Consensus       131 g~------P---~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~  200 (391)
                      |+      |   ..|+++.-.-.||++.++..||++|.+-|.+- .+...     ....|.+.+.+-..|..+.      
T Consensus       125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~~hgLla~G------  193 (703)
T KOG2321|consen  125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD-----SGELNVVSINEEHGLLACG------  193 (703)
T ss_pred             CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccc-----cccceeeeecCccceEEec------
Confidence            22      2   24555543567999888888999999876432 22111     1234555565544444433      


Q ss_pred             chhheeeecccCCCceEEEEeCCCCeEE-Eec-----------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          201 RRNFMQLVFSAEDTGRVLKYDPTTKQTT-VLL-----------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       201 ~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~-----------~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                                 ..+|.+-.||+.+++.- .+.           +....+..+.++.||-.+-|. |..+.++.|++..
T Consensus       194 -----------t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVG-ts~G~v~iyDLRa  259 (703)
T KOG2321|consen  194 -----------TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVG-TSTGSVLIYDLRA  259 (703)
T ss_pred             -----------ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEee-ccCCcEEEEEccc
Confidence                       22578888998776432 111           112235678888888666666 6778999999764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=91.19  E-value=3.8  Score=37.89  Aligned_cols=147  Identities=16%  Similarity=0.222  Sum_probs=84.4

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCCc---eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-CCcEEEE
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGLK---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGDLYIA  148 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-~g~L~V~  148 (391)
                      ...+.++|+.+.+++.||.|-.|+.+.   ..+|...+                     +.-..+.+..-|. ...+.||
T Consensus       353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~---------------------~d~~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG---------------------TDYPVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC---------------------CcccceeEEEcCCCCceEEEE
Confidence            345667999899999999999998762   11221111                     0011123333331 2357788


Q ss_pred             ECCCCeEEEeCCCCeeEEceec-cCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          149 DAYFGLMKVGPEGGLATSLATE-AEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~-~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      +..+.++.++.++-.++.+... -+|.  .|.+ -++.+.|. +|-...                  ++.+|+|...+|+
T Consensus       412 Nrsntv~imn~qGQvVrsfsSGkREgG--dFi~-~~lSpkGewiYcigE------------------D~vlYCF~~~sG~  470 (508)
T KOG0275|consen  412 NRSNTVYIMNMQGQVVRSFSSGKREGG--DFIN-AILSPKGEWIYCIGE------------------DGVLYCFSVLSGK  470 (508)
T ss_pred             cCCCeEEEEeccceEEeeeccCCccCC--ceEE-EEecCCCcEEEEEcc------------------CcEEEEEEeecCc
Confidence            7777899999887666655432 1111  2333 24456664 444432                  5789999998888


Q ss_pred             EEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          227 TTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       227 ~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                      .+..... -..+-|++-+|..+ ++.+ -...++.+.|
T Consensus       471 LE~tl~VhEkdvIGl~HHPHqN-llAs-YsEDgllKLW  506 (508)
T KOG0275|consen  471 LERTLPVHEKDVIGLTHHPHQN-LLAS-YSEDGLLKLW  506 (508)
T ss_pred             eeeeeecccccccccccCcccc-hhhh-hcccchhhhc
Confidence            7665422 24567888888777 4433 2233444443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.02  E-value=1.2  Score=27.65  Aligned_cols=38  Identities=24%  Similarity=0.389  Sum_probs=27.8

Q ss_pred             CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEc
Q 016318          189 NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLS  243 (391)
Q Consensus       189 ~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~  243 (391)
                      .+|+++..                 .+.|..+|+.+++...-......|.+++++
T Consensus         5 ~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         5 KLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             EEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            58988854                 578999999888765555455678888764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA02713 hypothetical protein; Provisional

Probab=90.94  E-value=21  Score=36.64  Aligned_cols=74  Identities=12%  Similarity=0.102  Sum_probs=43.3

Q ss_pred             CCcEEEEECC-------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318          142 TGDLYIADAY-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       142 ~g~L~V~d~~-------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ++.|||....       ..++++|+.++..+.+.....    .....-+..-+|.||+......            ....
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~----~R~~~~~~~~~g~IYviGG~~~------------~~~~  366 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK----NRCRFSLAVIDDTIYAIGGQNG------------TNVE  366 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc----hhhceeEEEECCEEEEECCcCC------------CCCC
Confidence            5789887442       127899999887665432111    1111122333789999863210            0112


Q ss_pred             ceEEEEeCCCCeEEEec
Q 016318          215 GRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~  231 (391)
                      ..+.+|||.+++...+.
T Consensus       367 ~sve~Ydp~~~~W~~~~  383 (557)
T PHA02713        367 RTIECYTMGDDKWKMLP  383 (557)
T ss_pred             ceEEEEECCCCeEEECC
Confidence            45899999998887654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=90.90  E-value=2.9  Score=39.07  Aligned_cols=136  Identities=15%  Similarity=0.143  Sum_probs=68.8

Q ss_pred             CccCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheee
Q 016318          128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       128 ~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~  207 (391)
                      +.|...+++.|.  +|-+.-+.-...+-+.|.....-..+....-|. ....|-+.+|..  +.++.++           
T Consensus       275 hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd~k--yIVsASg-----------  338 (499)
T KOG0281|consen  275 HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDDK--YIVSASG-----------  338 (499)
T ss_pred             hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeeccccc--eEEEecC-----------
Confidence            456677888885  343333333344544444332211111111111 124555555544  4444443           


Q ss_pred             ecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEe
Q 016318          208 VFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  287 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~  287 (391)
                            +..+-.++..|++......+  .-.|||--.=...+.|+.+..+.|..+++.-.+  -..++.....+...|++
T Consensus       339 ------DRTikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~--cLRvLeGHEeLvRciRF  408 (499)
T KOG0281|consen  339 ------DRTIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA--CLRVLEGHEELVRCIRF  408 (499)
T ss_pred             ------CceEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEEEEeccccH--HHHHHhchHHhhhheee
Confidence                  34677788888776443322  345676544333488888888888888865321  11222211124556777


Q ss_pred             CC
Q 016318          288 NE  289 (391)
Q Consensus       288 d~  289 (391)
                      |.
T Consensus       409 d~  410 (499)
T KOG0281|consen  409 DN  410 (499)
T ss_pred             cC
Confidence            64

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=90.80  E-value=21  Score=36.59  Aligned_cols=184  Identities=14%  Similarity=0.135  Sum_probs=90.7

Q ss_pred             ccCcceEEEc------cCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC
Q 016318           68 IQGPESMAFD------PLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (391)
Q Consensus        68 ~~gPe~i~~d------~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~  141 (391)
                      +++|+++...      .++..+.++..|..|.++...+...+.....+.                    +...++.... 
T Consensus        53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~--------------------snVC~ls~~~-  111 (745)
T KOG0301|consen   53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHK--------------------SNVCSLSIGE-  111 (745)
T ss_pred             cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccc--------------------cceeeeecCC-
Confidence            5566655433      333337888888888888766444443322222                    2233344443 


Q ss_pred             CCcEEEEECCCC--eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          142 TGDLYIADAYFG--LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       142 ~g~L~V~d~~~g--l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      ++.|.-+.+..-  +++..    +..   ...++.+ .....++.-+++ .|+|.+.                 +..|..
T Consensus       112 ~~~~iSgSWD~TakvW~~~----~l~---~~l~gH~-asVWAv~~l~e~-~~vTgsa-----------------DKtIkl  165 (745)
T KOG0301|consen  112 DGTLISGSWDSTAKVWRIG----ELV---YSLQGHT-ASVWAVASLPEN-TYVTGSA-----------------DKTIKL  165 (745)
T ss_pred             cCceEecccccceEEecch----hhh---cccCCcc-hheeeeeecCCC-cEEeccC-----------------cceeee
Confidence            455444444433  33221    111   1111111 133455666665 7787754                 223333


Q ss_pred             EeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcC
Q 016318          220 YDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      |.. ....+++........|+++-++..++-++  ..+.|.+++++|.-   .........+...|....++.+.|++..
T Consensus       166 Wk~-~~~l~tf~gHtD~VRgL~vl~~~~flScs--NDg~Ir~w~~~ge~---l~~~~ghtn~vYsis~~~~~~~Ivs~gE  239 (745)
T KOG0301|consen  166 WKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCS--NDGSIRLWDLDGEV---LLEMHGHTNFVYSISMALSDGLIVSTGE  239 (745)
T ss_pred             ccC-CchhhhhccchhheeeeEEecCCCeEeec--CCceEEEEeccCce---eeeeeccceEEEEEEecCCCCeEEEecC
Confidence            433 23333443334456788888887755443  34566666666631   1111111123445665566667787777


Q ss_pred             CCchh
Q 016318          300 RRSLY  304 (391)
Q Consensus       300 ~~~~~  304 (391)
                      .+...
T Consensus       240 Drtlr  244 (745)
T KOG0301|consen  240 DRTLR  244 (745)
T ss_pred             CceEE
Confidence            76643

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.57  E-value=22  Score=36.23  Aligned_cols=81  Identities=19%  Similarity=0.259  Sum_probs=43.0

Q ss_pred             CCceEEEEeCCCCeEEEeccCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCc--eEeC
Q 016318          213 DTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDN--VRTN  288 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~~~~~-ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~--i~~d  288 (391)
                      +.|.|..+|+.+|++.--.. ...| .+-.+.-.+..+++ .+.++.++.++.+.   |+ .++. .+++...+  |...
T Consensus       439 ~~g~l~AiD~~tGk~~W~~~-~~~p~~~~~l~t~g~lvf~-g~~~G~l~a~D~~T---Ge-~lw~~~~g~~~~a~P~ty~  512 (527)
T TIGR03075       439 HMGSLIAWDPITGKIVWEHK-EDFPLWGGVLATAGDLVFY-GTLEGYFKAFDAKT---GE-ELWKFKTGSGIVGPPVTYE  512 (527)
T ss_pred             CceeEEEEeCCCCceeeEec-CCCCCCCcceEECCcEEEE-ECCCCeEEEEECCC---CC-EeEEEeCCCCceecCEEEE
Confidence            46789999999997654322 1222 11122234553444 46677888888543   32 2222 23321111  4434


Q ss_pred             CCCCEEEEEcC
Q 016318          289 EKGEFWVAIHC  299 (391)
Q Consensus       289 ~~G~lwva~~~  299 (391)
                      .+|+.||+...
T Consensus       513 ~~G~qYv~~~~  523 (527)
T TIGR03075       513 QDGKQYVAVLS  523 (527)
T ss_pred             eCCEEEEEEEe
Confidence            57888887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.51  E-value=1.3  Score=27.47  Aligned_cols=42  Identities=14%  Similarity=0.100  Sum_probs=27.6

Q ss_pred             cCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318          244 KDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  288 (391)
Q Consensus       244 ~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d  288 (391)
                      ||++++|+++...+.|..++...   ++...-......|.+|+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~---~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT---NKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC---CeEEEEEECCCCCceEEeC
Confidence            57888999998889999998642   2211112233468887764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=90.50  E-value=3  Score=44.00  Aligned_cols=100  Identities=13%  Similarity=0.167  Sum_probs=63.7

Q ss_pred             cEEEEECCCCeEEEeCCCCeeEEceecc-CCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          144 DLYIADAYFGLMKVGPEGGLATSLATEA-EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       144 ~L~V~d~~~gl~~~d~~~g~~~~~~~~~-~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      .-++|-..++|+++||.-..-+.+.... .-..-.....++.+.+|.|-+++.                  .|.|-.||.
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~  605 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDR  605 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecc
Confidence            4677777788999988642211111111 001123445678888999888874                  377778887


Q ss_pred             CCCeEEEeccCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          223 TTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       223 ~~~~~~~~~~~~~~~-ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                      -+.+.++...++..| .||.++.||+||+.  |...-|..++
T Consensus       606 ~g~~AKT~lp~lG~pI~~iDvt~DGkwila--Tc~tyLlLi~  645 (794)
T PF08553_consen  606 LGKRAKTALPGLGDPIIGIDVTADGKWILA--TCKTYLLLID  645 (794)
T ss_pred             cchhhhhcCCCCCCCeeEEEecCCCcEEEE--eecceEEEEE
Confidence            666677777777655 59999999996654  3344555555

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=90.40  E-value=15  Score=34.22  Aligned_cols=139  Identities=12%  Similarity=0.077  Sum_probs=72.8

Q ss_pred             CCcEEEEECCCC-eEEEeCCCCeeEEceeccCC-CcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          142 TGDLYIADAYFG-LMKVGPEGGLATSLATEAEG-VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       142 ~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~-~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      +-+||.+..... |..+|.-+|+.+--....+. ........+++.+||.-.|+...                  ..|-.
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk------------------rcirv  183 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK------------------RCIRV  183 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc------------------ceEEE
Confidence            456776665533 88888888876543222111 12445678999999964454421                  23444


Q ss_pred             EeC-CCCeE-EE---eccC----CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCC
Q 016318          220 YDP-TTKQT-TV---LLRN----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK  290 (391)
Q Consensus       220 ~d~-~~~~~-~~---~~~~----~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~  290 (391)
                      ||. ..|.- .+   +..+    ......++++|-....+..-+..+++-.|.-.+.  +-..+.....|...-+...++
T Consensus       184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~--~pl~llggh~gGvThL~~~ed  261 (406)
T KOG2919|consen  184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR--RPLQLLGGHGGGVTHLQWCED  261 (406)
T ss_pred             eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC--CceeeecccCCCeeeEEeccC
Confidence            554 22221 11   1111    1123456788866545555566677666654331  111122222344555677888


Q ss_pred             CC-EEEEEcCC
Q 016318          291 GE-FWVAIHCR  300 (391)
Q Consensus       291 G~-lwva~~~~  300 (391)
                      |+ +|++....
T Consensus       262 Gn~lfsGaRk~  272 (406)
T KOG2919|consen  262 GNKLFSGARKD  272 (406)
T ss_pred             cCeecccccCC
Confidence            88 77765443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.28  E-value=5.4  Score=37.88  Aligned_cols=138  Identities=12%  Similarity=-0.042  Sum_probs=79.0

Q ss_pred             CcceEEEccC--CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           70 GPESMAFDPL--GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        70 gPe~i~~d~~--G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ++.++.|-+.  ...+.+++.-+.+..||+. +-+.++.+.-                 .|   .-...+...++++.+|
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-----------------~E---~~is~~~l~p~gn~Iy  263 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-----------------LE---NPISSTGLTPSGNFIY  263 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-----------------cc---CcceeeeecCCCcEEE
Confidence            5556655543  4557888888999999887 4444443310                 00   1122455666455689


Q ss_pred             EEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       147 V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      ++++...|..||..+++..-.  ...|. -..+.+|..++.+.+..+..-                 +..|-.||.++.+
T Consensus       264 ~gn~~g~l~~FD~r~~kl~g~--~~kg~-tGsirsih~hp~~~~las~GL-----------------DRyvRIhD~ktrk  323 (412)
T KOG3881|consen  264 TGNTKGQLAKFDLRGGKLLGC--GLKGI-TGSIRSIHCHPTHPVLASCGL-----------------DRYVRIHDIKTRK  323 (412)
T ss_pred             EecccchhheecccCceeecc--ccCCc-cCCcceEEEcCCCceEEeecc-----------------ceeEEEeecccch
Confidence            998877799999987753322  12221 235788888888777665422                 1234446766533


Q ss_pred             EEEeccCCCCcceEEEccCCC
Q 016318          227 TTVLLRNLQFPNGLSLSKDKS  247 (391)
Q Consensus       227 ~~~~~~~~~~~ngia~~~d~~  247 (391)
                      ...-.-.-..+|+|.+.++-+
T Consensus       324 ll~kvYvKs~lt~il~~~~~n  344 (412)
T KOG3881|consen  324 LLHKVYVKSRLTFILLRDDVN  344 (412)
T ss_pred             hhhhhhhhccccEEEecCCcc
Confidence            322111123566776655443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=90.26  E-value=5.3  Score=42.28  Aligned_cols=141  Identities=16%  Similarity=0.263  Sum_probs=80.2

Q ss_pred             ccceEEEecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecC------CCCEEEEeCCCcccchh
Q 016318          132 RPLGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD------EGNVYFTDSSTNYQRRN  203 (391)
Q Consensus       132 ~P~gi~~d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~------~G~ly~td~~~~~~~~~  203 (391)
                      .|..+-++..+.+|++-+..  +.|+++|...|++-.-.......+   ..+++-+.      +...|++-+        
T Consensus       482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~---v~~~~p~~K~aqlt~e~tflGls--------  550 (794)
T PF08553_consen  482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP---VVDIAPDSKFAQLTNEQTFLGLS--------  550 (794)
T ss_pred             CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcc---eeEecccccccccCCCceEEEEC--------
Confidence            46665565546677777654  569999999987654333222111   22222111      123344432        


Q ss_pred             heeeecccCCCceEEEEeCCCCeEEEeccCC-CC-----cceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc
Q 016318          204 FMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL-QF-----PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI  277 (391)
Q Consensus       204 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~-----~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~  277 (391)
                                ..+|+++||.-...+.+.... .+     -..+|-+.+|. |.|+ +..+.|..|+-.|.++.     ..
T Consensus       551 ----------~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~-iavg-s~~G~IRLyd~~g~~AK-----T~  613 (794)
T PF08553_consen  551 ----------DNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGY-IAVG-SNKGDIRLYDRLGKRAK-----TA  613 (794)
T ss_pred             ----------CCceEEeccCCCCCceeeccccccccCCCceEEEecCCce-EEEE-eCCCcEEeecccchhhh-----hc
Confidence                      468999998643322222111 11     23567788887 6676 56778888874442111     12


Q ss_pred             cCCC---CCceEeCCCCCEEEEEcCC
Q 016318          278 LPGY---PDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       278 ~~g~---p~~i~~d~~G~lwva~~~~  300 (391)
                      +||+   .-+|.+..||+..+|+...
T Consensus       614 lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  614 LPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             CCCCCCCeeEEEecCCCcEEEEeecc
Confidence            5543   2578899999988887654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=89.98  E-value=6.1  Score=37.79  Aligned_cols=154  Identities=18%  Similarity=0.098  Sum_probs=89.0

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .-.++++.++...+.+++.||+|..|+....++-.                    .....+..+..+..++ ...|.+.-
T Consensus       182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~--------------------vL~GHgwdVksvdWHP-~kgLiasg  240 (464)
T KOG0284|consen  182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER--------------------VLRGHGWDVKSVDWHP-TKGLIASG  240 (464)
T ss_pred             hhheeccCCCCceeEEecCCCeEEEEeccCCchhh--------------------eeccCCCCcceeccCC-ccceeEEc
Confidence            45688999888778888999988888654111000                    0111244577888888 44444443


Q ss_pred             CC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC-CeE
Q 016318          150 AY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT-KQT  227 (391)
Q Consensus       150 ~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~  227 (391)
                      .. +-|-.+|+++|..  +.+...  -.+...++.+.++|+...|-+.                 +-.+-.||..+ +++
T Consensus       241 skDnlVKlWDprSg~c--l~tlh~--HKntVl~~~f~~n~N~Llt~sk-----------------D~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  241 SKDNLVKLWDPRSGSC--LATLHG--HKNTVLAVKFNPNGNWLLTGSK-----------------DQSCKVFDIRTMKEL  299 (464)
T ss_pred             cCCceeEeecCCCcch--hhhhhh--ccceEEEEEEcCCCCeeEEccC-----------------CceEEEEehhHhHHH
Confidence            33 3355568888742  221111  0134566778888877666543                 23455566542 222


Q ss_pred             EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      .++...-.+.+.++.+|=...|+++....+.|..+.+.
T Consensus       300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             HHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence            23322334566777888666688776667777776654

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=89.73  E-value=8.5  Score=35.97  Aligned_cols=124  Identities=18%  Similarity=0.217  Sum_probs=68.6

Q ss_pred             ceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEce-ec-c-----CCCcccCCcceeec----CCCCEEEEeCCCcccc
Q 016318          134 LGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLA-TE-A-----EGVPLRFTNDLDID----DEGNVYFTDSSTNYQR  201 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~-~~-~-----~~~~~~~~~~l~~d----~~G~ly~td~~~~~~~  201 (391)
                      ..+..+. +|+++|+... ..|++|++++|++.=.. .. .     .+..+.+-.+..+-    .+++|-+-|....-. 
T Consensus       147 NsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~-  224 (299)
T PF14269_consen  147 NSVDKDD-DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF-  224 (299)
T ss_pred             eeeeecC-CccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC-
Confidence            4666666 7788887655 34999999988654322 11 0     01112233333333    455555544310000 


Q ss_pred             hhheeeecccCCCceEEEEeCCCCeEEEeccCC------C--CcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          202 RNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL------Q--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       202 ~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~------~--~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                            .-.....++++.+|+.+++++.+..-.      .  ..-.++.-|+|+ ++|++....++.-++.+|
T Consensus       225 ------~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G  290 (299)
T PF14269_consen  225 ------NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDG  290 (299)
T ss_pred             ------CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCC
Confidence                  112234678999999877765543211      1  112455667777 777877777777776555

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.61  E-value=20  Score=34.43  Aligned_cols=110  Identities=14%  Similarity=0.128  Sum_probs=58.8

Q ss_pred             CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEE
Q 016318           79 LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKV  157 (391)
Q Consensus        79 ~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~  157 (391)
                      +|+ +|+++.+|.++.++.. .-......       +..           .  .+-.+-.+-. ++.+|+.+....++.+
T Consensus       111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~-------~~~-----------~--~~~~~~~v~~-~~~v~~~s~~g~~~al  168 (370)
T COG1520         111 DGK-IYVGSWDGKLYALDASTGTLVWSRN-------VGG-----------S--PYYASPPVVG-DGTVYVGTDDGHLYAL  168 (370)
T ss_pred             CCe-EEEecccceEEEEECCCCcEEEEEe-------cCC-----------C--eEEecCcEEc-CcEEEEecCCCeEEEE
Confidence            788 9999999999999884 21111111       000           0  0000111222 5778887644569999


Q ss_pred             eCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          158 GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       158 d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      |.++|+..-......+.......... ..+|.+|++..+               . ++.++.+|+++|+.
T Consensus       169 ~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~---------------~-~~~~~a~~~~~G~~  221 (370)
T COG1520         169 NADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDG---------------Y-DGILYALNAEDGTL  221 (370)
T ss_pred             EccCCcEEEEEecCCccccccccCce-eecceEEEecCC---------------C-cceEEEEEccCCcE
Confidence            99887543221111101222222333 568899998742               0 24677777766654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=89.12  E-value=24  Score=34.58  Aligned_cols=143  Identities=14%  Similarity=0.188  Sum_probs=82.8

Q ss_pred             CccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~  209 (391)
                      ....++++.. +|++++...+.| +..++..++.+..+... .+    ..-.+--..+|+..++..              
T Consensus       236 kdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G~l~~tl~~H-kg----PI~slKWnk~G~yilS~~--------------  295 (524)
T KOG0273|consen  236 KDVTSLDWNN-DGTLLATGSEDGEARIWNKDGNLISTLGQH-KG----PIFSLKWNKKGTYILSGG--------------  295 (524)
T ss_pred             CCcceEEecC-CCCeEEEeecCcEEEEEecCchhhhhhhcc-CC----ceEEEEEcCCCCEEEecc--------------
Confidence            3456888887 788888777777 55556666665555322 11    133455566777655542              


Q ss_pred             ccCCCceEEEEeCCCCeEEEeccCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  288 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~-ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d  288 (391)
                         -+++...+|..+++.++-.+--..| -.|.+-.+..  +++-...++|+++.+.+.  .-...|....|....|..+
T Consensus       296 ---vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~--~P~~t~~GH~g~V~alk~n  368 (524)
T KOG0273|consen  296 ---VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGED--RPVKTFIGHHGEVNALKWN  368 (524)
T ss_pred             ---CCccEEEEeccCceEEEeeeeccCCccceEEecCce--EeecCCCceEEEEEecCC--CcceeeecccCceEEEEEC
Confidence               2688999999888887754332233 2344433333  334355677888877653  1123333333445556677


Q ss_pred             CCCCEEEEEcCC
Q 016318          289 EKGEFWVAIHCR  300 (391)
Q Consensus       289 ~~G~lwva~~~~  300 (391)
                      +.|.++.+....
T Consensus       369 ~tg~LLaS~SdD  380 (524)
T KOG0273|consen  369 PTGSLLASCSDD  380 (524)
T ss_pred             CCCceEEEecCC
Confidence            777666654443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=89.07  E-value=26  Score=36.00  Aligned_cols=180  Identities=13%  Similarity=0.127  Sum_probs=90.8

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecC------C----CcccCCCC----CCc-cccccccCccCcc
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSN------N----RSELCNPK----PIA-TSYLKNEHICGRP  133 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~------~----~~~~~~~~----~~~-~~~~~~~~~~g~P  133 (391)
                      --++|...||+.+-.|..|..+..|+++  +.-.+.+...      |    .-..|+-+    +++ ...+.......|.
T Consensus        56 VycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~  135 (1081)
T KOG1538|consen   56 VYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRI  135 (1081)
T ss_pred             EEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeE
Confidence            4578889999966667777777777665  2222221110      0    00012111    010 1111111234556


Q ss_pred             ceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCC------CCEEEEeCCCcccchhheee
Q 016318          134 LGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE------GNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~------G~ly~td~~~~~~~~~~~~~  207 (391)
                      .+-.+.. +|..++-...+|-..+...+|+-+..... +|.+.....+++..+.      ..+-+.|.+           
T Consensus       136 ~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~R-pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~-----------  202 (1081)
T KOG1538|consen  136 ICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIER-PGGSNSPIWSICWNPSSGEGRNDILAVADWG-----------  202 (1081)
T ss_pred             EEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeC-CCCCCCCceEEEecCCCCCCccceEEEEecc-----------
Confidence            6667766 56665555666755554444443322221 2223334455655442      223444433           


Q ss_pred             ecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcc
Q 016318          208 VFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN  271 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~  271 (391)
                             -.+-.|..++..+..-..-...|..|..-++|.++++.. ....+..|+.+|-..|+
T Consensus       203 -------qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGG-sdk~L~~fTR~GvrLGT  258 (1081)
T KOG1538|consen  203 -------QTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGG-SDKQLSLFTRDGVRLGT  258 (1081)
T ss_pred             -------ceeEEEEecceeecccccCCCCchhheeccCCcEEEEcc-CCCceEEEeecCeEEee
Confidence                   234444443322221111123578888889999998884 45678888888754444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=89.04  E-value=15  Score=32.69  Aligned_cols=110  Identities=13%  Similarity=0.153  Sum_probs=65.0

Q ss_pred             CccceEEEecCCCcEEEEECC-CCeEEEeCCCCe-eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318          131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~-~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      +....+++.. +|+.-++... +-+-.+||..|. ++.+...  |   ...-+.+...|+.=+.+               
T Consensus        18 gaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsgh--G---~EVlD~~~s~Dnskf~s---------------   76 (307)
T KOG0316|consen   18 GAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGH--G---HEVLDAALSSDNSKFAS---------------   76 (307)
T ss_pred             cceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCC--C---ceeeecccccccccccc---------------
Confidence            5566778877 6665554433 346677886654 3333221  1   12334444444322222               


Q ss_pred             cccCCCceEEEEeCCCCeE-EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318          209 FSAEDTGRVLKYDPTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  264 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~  264 (391)
                        +.++..+..||-+||++ +.+.......|.|++..+.. +.++.+....+..++-
T Consensus        77 --~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDC  130 (307)
T KOG0316|consen   77 --CGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDC  130 (307)
T ss_pred             --CCCCceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEc
Confidence              23355788999998876 44555667889999976655 7777676666666653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.92  E-value=36  Score=36.35  Aligned_cols=23  Identities=13%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             CCcEEEEECCCCeEEEeCCCCee
Q 016318          142 TGDLYIADAYFGLMKVGPEGGLA  164 (391)
Q Consensus       142 ~g~L~V~d~~~gl~~~d~~~g~~  164 (391)
                      ++.||+++..+.|+.+|.+||+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~  216 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKE  216 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE
Confidence            68999998877799999998863

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=88.74  E-value=11  Score=36.29  Aligned_cols=110  Identities=14%  Similarity=0.057  Sum_probs=66.5

Q ss_pred             eEEEecCCCcEEEEECCCC-eEEEeCCCC--eeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecc
Q 016318          135 GLRFDKKTGDLYIADAYFG-LMKVGPEGG--LATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~g-l~~~d~~~g--~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~  210 (391)
                      .+++++....|+.+-...+ |...|..++  +........    -.-.+.+++.+-+ .|..|.++              
T Consensus       232 DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah----~~~vn~~~fnp~~~~ilAT~S~--------------  293 (422)
T KOG0264|consen  232 DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH----SAEVNCVAFNPFNEFILATGSA--------------  293 (422)
T ss_pred             hhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc----CCceeEEEeCCCCCceEEeccC--------------
Confidence            4455554556666655545 677777643  111111111    2346888998855 55555433              


Q ss_pred             cCCCceEEEEeCCCCeEEE--eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          211 AEDTGRVLKYDPTTKQTTV--LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~--~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                         +++|..||..+-....  +...-..-..|.++|....++.+....+|+..+++.
T Consensus       294 ---D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  294 ---DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             ---CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence               6889999986543321  222223456789999998888887777888888875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=88.66  E-value=32  Score=35.56  Aligned_cols=179  Identities=12%  Similarity=0.068  Sum_probs=93.1

Q ss_pred             eEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEe-cCCCcEEEEECCCCeEEEeCCC
Q 016318           83 PYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD-KKTGDLYIADAYFGLMKVGPEG  161 (391)
Q Consensus        83 ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d-~~~g~L~V~d~~~gl~~~d~~~  161 (391)
                      +.+-+.+..++.++.+..+.......+                    ....+.|+|- +++..|.||+....+-.++..|
T Consensus       296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~--------------------ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~  355 (775)
T KOG0319|consen  296 LLLVTAEQNLFLYDEDELTIVKQIVGY--------------------NDEILDMKFLGPEESHLAVATNSPELRLYTLPT  355 (775)
T ss_pred             eEEEEccceEEEEEccccEEehhhcCC--------------------chhheeeeecCCccceEEEEeCCCceEEEecCC
Confidence            555666777777766533322211111                    2334556654 3356688887666677777776


Q ss_pred             CeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC---CCCcc
Q 016318          162 GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN---LQFPN  238 (391)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---~~~~n  238 (391)
                      -..+.+..+.+     ....+++..+|-+.+|.+.               ..+-+++|+|.+-.+...+...   -..-.
T Consensus       356 ~~c~ii~GH~e-----~vlSL~~~~~g~llat~sK---------------D~svilWr~~~~~~~~~~~a~~~gH~~svg  415 (775)
T KOG0319|consen  356 SYCQIIPGHTE-----AVLSLDVWSSGDLLATGSK---------------DKSVILWRLNNNCSKSLCVAQANGHTNSVG  415 (775)
T ss_pred             CceEEEeCchh-----heeeeeecccCcEEEEecC---------------CceEEEEEecCCcchhhhhhhhcccccccc
Confidence            65554432221     3456666677755555432               2345788885433332222211   12334


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEE-eccccCcc-ceeecc------cCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          239 GLSLSKDKSFFVFCEGSVGRLHKYW-LIGEKAGN-LEAFAI------LPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       239 gia~~~d~~~l~v~et~~~~I~~~~-~~g~~~g~-~~~~~~------~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      +|+++..+-..+++-+.. +..+.| +...+... ...|..      ..--.+++++.++..+..+....+.
T Consensus       416 ava~~~~~asffvsvS~D-~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt  486 (775)
T KOG0319|consen  416 AVAGSKLGASFFVSVSQD-CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT  486 (775)
T ss_pred             eeeecccCccEEEEecCC-ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence            678877777777775544 444444 43321111 112210      0112567889888877655444443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.65  E-value=5.9  Score=34.65  Aligned_cols=53  Identities=15%  Similarity=0.223  Sum_probs=36.4

Q ss_pred             CCcEEEEECC-CCeEEEeCCCCeeEEceec--------cCCCcccCCcceeecCCC-CEEEEe
Q 016318          142 TGDLYIADAY-FGLMKVGPEGGLATSLATE--------AEGVPLRFTNDLDIDDEG-NVYFTD  194 (391)
Q Consensus       142 ~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~--------~~~~~~~~~~~l~~d~~G-~ly~td  194 (391)
                      +|.||.--+. ..|.+++|++|++......        .+....+.+|+||.++++ ++|+|.
T Consensus       185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            3566655444 4599999999987654321        122335689999999865 898886

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=88.64  E-value=32  Score=35.42  Aligned_cols=111  Identities=20%  Similarity=0.276  Sum_probs=63.1

Q ss_pred             ceEEEecCCCcEEEEECCC-C------eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhhee
Q 016318          134 LGLRFDKKTGDLYIADAYF-G------LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~-g------l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~  206 (391)
                      .|+++.  +|.|||..... |      +.++|+.+++...+..-..   .+.--++++- +|.||+......        
T Consensus       326 ~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~---~R~~~~v~~l-~g~iYavGG~dg--------  391 (571)
T KOG4441|consen  326 VGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT---KRSDFGVAVL-DGKLYAVGGFDG--------  391 (571)
T ss_pred             ccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC---ccccceeEEE-CCEEEEEecccc--------
Confidence            466665  57899986554 2      8899999888665432211   1111222222 788999863310        


Q ss_pred             eecccCCCceEEEEeCCCCeEEEeccCCC--CcceEEEccCCCEEEEEeCCC------CeEEEEEe
Q 016318          207 LVFSAEDTGRVLKYDPTTKQTTVLLRNLQ--FPNGLSLSKDKSFFVFCEGSV------GRLHKYWL  264 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--~~ngia~~~d~~~l~v~et~~------~~I~~~~~  264 (391)
                          ...-..+-+|||.+.+......-..  ...|++. -+|. ||+.....      ..+.+|+.
T Consensus       392 ----~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~-~~g~-iYi~GG~~~~~~~l~sve~YDP  451 (571)
T KOG4441|consen  392 ----EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV-LGGK-LYIIGGGDGSSNCLNSVECYDP  451 (571)
T ss_pred             ----ccccccEEEecCCCCcccccCCCCcceeeeEEEE-ECCE-EEEEcCcCCCccccceEEEEcC
Confidence                1112368999999998877653322  2223333 2454 88874311      34666663

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=88.40  E-value=18  Score=33.45  Aligned_cols=59  Identities=12%  Similarity=0.183  Sum_probs=32.0

Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEE
Q 016318          234 LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWV  295 (391)
Q Consensus       234 ~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwv  295 (391)
                      ....|+|+|+|.-. .+++.. +.....+|=+.. ..+.......+.-...-+++.+|.+|+
T Consensus       251 VYaVNsi~FhP~hg-tlvTaG-sDGtf~FWDkda-r~kLk~s~~~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  251 VYAVNSIAFHPVHG-TLVTAG-SDGTFSFWDKDA-RTKLKTSETHPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             eEEecceEeecccc-eEEEec-CCceEEEecchh-hhhhhccCcCCCccceeEecCCCCEEE
Confidence            44568999999776 455534 344555552221 111222222333234456789999775

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=88.04  E-value=9  Score=38.13  Aligned_cols=98  Identities=15%  Similarity=0.053  Sum_probs=55.7

Q ss_pred             chhccccceecc-ccccCc-ceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecC-CCcccCCCCCCccccccccCc
Q 016318           54 KNLLQNSEIKFL-NQIQGP-ESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSN-NRSELCNPKPIATSYLKNEHI  129 (391)
Q Consensus        54 ~~~l~~~~~~~~-~~~~gP-e~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  129 (391)
                      ++.-...+.++. ..-.|| -++++-++|...|++..||.|..|+.. ....+....+ ....            .....
T Consensus       328 ~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~------------~l~Gh  395 (577)
T KOG0642|consen  328 KSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG------------TLLGH  395 (577)
T ss_pred             CccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc------------ceecc
Confidence            333334444443 123566 456777889999999999999999543 2111110000 0000            01112


Q ss_pred             cCccceEEEecCCCcEEEEECCCCeEEEeCCCCe
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGL  163 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~  163 (391)
                      .+..++++++....+|..|++..-+.-+++....
T Consensus       396 tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~  429 (577)
T KOG0642|consen  396 TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES  429 (577)
T ss_pred             ccceeeeeecccccceeeecCCceEEeeccCCcC
Confidence            3446788888766778888766667777766543

>PHA02790 Kelch-like protein; Provisional

Probab=87.87  E-value=18  Score=36.31  Aligned_cols=84  Identities=10%  Similarity=0.078  Sum_probs=49.8

Q ss_pred             CCcEEEEECC----CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceE
Q 016318          142 TGDLYIADAY----FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRV  217 (391)
Q Consensus       142 ~g~L~V~d~~----~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l  217 (391)
                      +|.|||....    ..+.++||.+++.+.......  +  ....-++.-+|.||+..                    |..
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~--~--r~~~~~~~~~~~IYv~G--------------------G~~  417 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY--P--HYKSCALVFGRRLFLVG--------------------RNA  417 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC--c--cccceEEEECCEEEEEC--------------------Cce
Confidence            6899997432    236788999887776532211  1  11122333478999976                    457


Q ss_pred             EEEeCCCCeEEEeccCCCCc---ceEEEccCCCEEEEE
Q 016318          218 LKYDPTTKQTTVLLRNLQFP---NGLSLSKDKSFFVFC  252 (391)
Q Consensus       218 ~~~d~~~~~~~~~~~~~~~~---ngia~~~d~~~l~v~  252 (391)
                      .+||+++++.+.+.. +..|   .|+++- +++ ||+.
T Consensus       418 e~ydp~~~~W~~~~~-m~~~r~~~~~~v~-~~~-IYvi  452 (480)
T PHA02790        418 EFYCESSNTWTLIDD-PIYPRDNPELIIV-DNK-LLLI  452 (480)
T ss_pred             EEecCCCCcEeEcCC-CCCCccccEEEEE-CCE-EEEE
Confidence            789999998877642 3222   244432 444 7766

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=87.76  E-value=19  Score=37.30  Aligned_cols=148  Identities=12%  Similarity=0.075  Sum_probs=88.1

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCc-cceEEEecCCCcEEEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR-PLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-P~gi~~d~~~g~L~V~d  149 (391)
                      --++.++|||+.+-++.-|..+-.+-.+..+.|...                   +.  ..- ..+|.+++ +..|.|+.
T Consensus       511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL-------------------YG--HkLPV~smDIS~-DSklivTg  568 (888)
T KOG0306|consen  511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL-------------------YG--HKLPVLSMDISP-DSKLIVTG  568 (888)
T ss_pred             EEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee-------------------cc--cccceeEEeccC-CcCeEEec
Confidence            346789999998889999988777766544333211                   00  111 34777777 56776654


Q ss_pred             C-CCCeEEEeCCCCeeEE-ceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC-e
Q 016318          150 A-YFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK-Q  226 (391)
Q Consensus       150 ~-~~gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~  226 (391)
                      + .+.+-.+..+=|..+. +-.+ +    .....+.+-|+..++|+...                 ++.+-+||.+.= .
T Consensus       569 SADKnVKiWGLdFGDCHKS~fAH-d----DSvm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~  626 (888)
T KOG0306|consen  569 SADKNVKIWGLDFGDCHKSFFAH-D----DSVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEE  626 (888)
T ss_pred             cCCCceEEeccccchhhhhhhcc-c----CceeEEEEcccceeEEEecC-----------------cceEEeechhhhhh
Confidence            4 3555555444443332 1111 1    13466777888888888743                 567778876432 2


Q ss_pred             EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          227 TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       227 ~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                      +..+.........++++|+|.++ |+.+....|..+.
T Consensus       627 iq~L~~H~~ev~cLav~~~G~~v-vs~shD~sIRlwE  662 (888)
T KOG0306|consen  627 IQKLDGHHSEVWCLAVSPNGSFV-VSSSHDKSIRLWE  662 (888)
T ss_pred             heeeccchheeeeeEEcCCCCeE-EeccCCceeEeee
Confidence            33344445577889999999944 5544444555544

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=87.16  E-value=1.9  Score=26.66  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=26.1

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCCC
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGG  162 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g  162 (391)
                      ...|.|+++|+.+++||.+|...+ |.+.+.++.
T Consensus         8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            467899999997788999998865 777776643

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=87.06  E-value=28  Score=33.00  Aligned_cols=147  Identities=13%  Similarity=0.097  Sum_probs=78.7

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF  152 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~  152 (391)
                      +++.+|+.++..+|..|..-+.|+...-. ++         |.          ..........+.|+. +|.|.+...-.
T Consensus        69 avsl~P~~~l~aTGGgDD~AflW~~~~ge-~~---------~e----------ltgHKDSVt~~~Fsh-dgtlLATGdms  127 (399)
T KOG0296|consen   69 AVSLHPNNNLVATGGGDDLAFLWDISTGE-FA---------GE----------LTGHKDSVTCCSFSH-DGTLLATGDMS  127 (399)
T ss_pred             EEEeCCCCceEEecCCCceEEEEEccCCc-ce---------eE----------ecCCCCceEEEEEcc-CceEEEecCCC
Confidence            45566766656666666666666544111 11         10          001123355677876 56655542224


Q ss_pred             C-eEEEeCCCCeeEEceeccCCCcccCCcce---eecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          153 G-LMKVGPEGGLATSLATEAEGVPLRFTNDL---DIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       153 g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l---~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      | |+.+..+++..+.-...       ..++|   .-.|.+.+.++.+                 .+|.++.|....+...
T Consensus       128 G~v~v~~~stg~~~~~~~~-------e~~dieWl~WHp~a~illAG~-----------------~DGsvWmw~ip~~~~~  183 (399)
T KOG0296|consen  128 GKVLVFKVSTGGEQWKLDQ-------EVEDIEWLKWHPRAHILLAGS-----------------TDGSVWMWQIPSQALC  183 (399)
T ss_pred             ccEEEEEcccCceEEEeec-------ccCceEEEEecccccEEEeec-----------------CCCcEEEEECCCccee
Confidence            4 66666666543321110       12222   3355666666553                 3688999987774444


Q ss_pred             EeccCCC-CcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          229 VLLRNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       229 ~~~~~~~-~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      .+..+-. ..+.=.+.|||+.+....+ ++.|.+++++
T Consensus       184 kv~~Gh~~~ct~G~f~pdGKr~~tgy~-dgti~~Wn~k  220 (399)
T KOG0296|consen  184 KVMSGHNSPCTCGEFIPDGKRILTGYD-DGTIIVWNPK  220 (399)
T ss_pred             eEecCCCCCcccccccCCCceEEEEec-CceEEEEecC
Confidence            4443332 3334457899997776644 6677777754

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=87.06  E-value=24  Score=36.50  Aligned_cols=99  Identities=14%  Similarity=0.123  Sum_probs=55.7

Q ss_pred             CCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCC----CcceEEEccCCCEEEEEe
Q 016318          178 FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ----FPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       178 ~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~----~~ngia~~~d~~~l~v~e  253 (391)
                      -.++|++|+.-.+.++...                 +..|-.||.++++......+-+    .+--+.++|.|.  |++.
T Consensus       598 TlYDm~Vdp~~k~v~t~cQ-----------------Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi--Y~at  658 (1080)
T KOG1408|consen  598 TLYDMAVDPTSKLVVTVCQ-----------------DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI--YLAT  658 (1080)
T ss_pred             eEEEeeeCCCcceEEEEec-----------------ccceEEEeccccceeeeecccccCCCceEEEEECCCcc--EEEE
Confidence            4577888876655555421                 3457778887776665554332    344577888884  5554


Q ss_pred             CC-CCeEEEEEec-cc----cCccceeecccCCCCCc---eEeCCCCCEEE
Q 016318          254 GS-VGRLHKYWLI-GE----KAGNLEAFAILPGYPDN---VRTNEKGEFWV  295 (391)
Q Consensus       254 t~-~~~I~~~~~~-g~----~~g~~~~~~~~~g~p~~---i~~d~~G~lwv  295 (391)
                      +. +..|..|+.. |+    ..|..|....+.-.+|.   |.++.||-++|
T Consensus       659 Scsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFv  709 (1080)
T KOG1408|consen  659 SCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFV  709 (1080)
T ss_pred             eecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEE
Confidence            43 4456667654 22    12333433322223443   67778887665

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=86.85  E-value=2  Score=27.08  Aligned_cols=40  Identities=10%  Similarity=0.043  Sum_probs=28.9

Q ss_pred             EEEEEeCCCC-eEEEEEeccccCccceeecccCCCCCceEeCC
Q 016318          248 FFVFCEGSVG-RLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE  289 (391)
Q Consensus       248 ~l~v~et~~~-~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~  289 (391)
                      .||++|.... +|.+.+++|..  ...++.+.-..|.+|++|.
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs~--~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGSN--RRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTSTS--EEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCCCC--eEEEEECCCCCcCEEEECC
Confidence            4999999999 99999998842  2233333334699999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=86.66  E-value=35  Score=37.12  Aligned_cols=143  Identities=17%  Similarity=0.270  Sum_probs=86.9

Q ss_pred             CccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeee
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      ..|-++++|.-.+++|-.|.... +.+.+.++...+.+....    +..+..+++++ .|.+|+++.+. .         
T Consensus       480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~----l~~~r~~~v~p~~g~~~wtd~~~-~---------  545 (877)
T KOG1215|consen  480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKD----LDLPRSIAVDPEKGLMFWTDWGQ-P---------  545 (877)
T ss_pred             cccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecC----CCCccceeeccccCeeEEecCCC-C---------
Confidence            45778999976788999988765 455554544333333221    24688899998 68999999762 1         


Q ss_pred             cccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCC-eEEEEEeccccCccceeecccCCCCCceE
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVG-RLHKYWLIGEKAGNLEAFAILPGYPDNVR  286 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~-~I~~~~~~g~~~g~~~~~~~~~g~p~~i~  286 (391)
                            .++.+-..+.....++. .+...|||++++-..+.+|+++.... .|.+....|....  .........|..++
T Consensus       546 ------~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~--~~~~~~~~~p~~~~  617 (877)
T KOG1215|consen  546 ------PRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR--VVDSEDLPHPFGLS  617 (877)
T ss_pred             ------chhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE--EeccccCCCceEEE
Confidence                  12333222222222322 33678999999887777999988777 6888887764211  11112223566776


Q ss_pred             eCCCCCEEE
Q 016318          287 TNEKGEFWV  295 (391)
Q Consensus       287 ~d~~G~lwv  295 (391)
                      +-.+.-+|.
T Consensus       618 ~~~~~iyw~  626 (877)
T KOG1215|consen  618 VFEDYIYWT  626 (877)
T ss_pred             EecceeEEe
Confidence            654443443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=86.38  E-value=8.3  Score=36.71  Aligned_cols=114  Identities=13%  Similarity=0.121  Sum_probs=63.3

Q ss_pred             cCccceEEEecCCCc-EEEEECCCCeEEEeCCCCe--eEEceeccCCCcccCCcceeecCC-CCEEEEeCCCcccchhhe
Q 016318          130 CGRPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGL--ATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFM  205 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~-L~V~d~~~gl~~~d~~~g~--~~~~~~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~  205 (391)
                      |.++..+...+ +++ |++++..+..+.++..+..  .+.+... ..  ...++.+.+..+ -.+-+++.          
T Consensus        62 ~~a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v--~~~~~ai~~~~~~~sv~v~dk----------  127 (390)
T KOG3914|consen   62 SLAPALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CV--PKRPTAISFIREDTSVLVADK----------  127 (390)
T ss_pred             hccccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEe-ec--ccCcceeeeeeccceEEEEee----------
Confidence            45555556655 455 5777777775444443221  2222111 11  124566655543 34555653          


Q ss_pred             eeecccCCCceEEEEeCCC---CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          206 QLVFSAEDTGRVLKYDPTT---KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       206 ~~~~~~~~~g~l~~~d~~~---~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                              .|-++.+|.-.   +..+..+..+..-..|+++||+++|+.+|. ...|+..+..+
T Consensus       128 --------agD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDR-DEkIRvs~ypa  182 (390)
T KOG3914|consen  128 --------AGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADR-DEKIRVSRYPA  182 (390)
T ss_pred             --------cCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecC-CceEEEEecCc
Confidence                    24455555322   445555555667778999999998887754 55677766544

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.26  E-value=29  Score=32.37  Aligned_cols=31  Identities=13%  Similarity=0.324  Sum_probs=21.5

Q ss_pred             ccccCcceEEEccCCCeeEEEe-cCCEEEEEeC
Q 016318           66 NQIQGPESMAFDPLGRGPYTGV-ADGRILFWDG   97 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~-~~g~I~~~~~   97 (391)
                      ..+..|-+|++.|.|- +|++. ..+..-.++.
T Consensus        20 p~L~N~WGia~~p~~~-~WVadngT~~~TlYdg   51 (336)
T TIGR03118        20 PGLRNAWGLSYRPGGP-FWVANTGTGTATLYVG   51 (336)
T ss_pred             ccccccceeEecCCCC-EEEecCCcceEEeecC
Confidence            3477899999999887 66654 4455555554

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=86.20  E-value=31  Score=32.70  Aligned_cols=156  Identities=13%  Similarity=0.105  Sum_probs=87.9

Q ss_pred             cccccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      -|-+.+--++...|.-+.++++..|..+..||.. +...+. .+...                    +-...+.+-+-+.
T Consensus       232 hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~-l~GH~--------------------~~V~~V~~~~~dp  290 (460)
T KOG0285|consen  232 HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV-LSGHT--------------------NPVASVMCQPTDP  290 (460)
T ss_pred             ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE-ecCCC--------------------CcceeEEeecCCC
Confidence            4667788888888877889999999888888765 222221 11110                    1112333433356


Q ss_pred             cEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          144 DLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       144 ~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      .++-+....-|...|...|+--.-.+..    -.....++..|+-+++.+.+.                  ..+-+++..
T Consensus       291 qvit~S~D~tvrlWDl~agkt~~tlt~h----kksvral~lhP~e~~fASas~------------------dnik~w~~p  348 (460)
T KOG0285|consen  291 QVITGSHDSTVRLWDLRAGKTMITLTHH----KKSVRALCLHPKENLFASASP------------------DNIKQWKLP  348 (460)
T ss_pred             ceEEecCCceEEEeeeccCceeEeeecc----cceeeEEecCCchhhhhccCC------------------ccceeccCC
Confidence            7777766666777777655322111111    134667788888777666543                  234444433


Q ss_pred             CCeEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          224 TKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       224 ~~~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      .|+...-..+ -...|.++...|+  ++++...++.|+.++.+
T Consensus       349 ~g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  349 EGEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             ccchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecC
Confidence            3333221111 1234556666666  77887777788887654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=86.12  E-value=15  Score=37.34  Aligned_cols=158  Identities=16%  Similarity=0.161  Sum_probs=88.5

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      +-.+|+.-.+|+.+..++.|-.|..|+...-..+          |..        ..-....+..++++-..+..|.+ .
T Consensus        75 WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~----------c~s--------tir~H~DYVkcla~~ak~~~lva-S  135 (735)
T KOG0308|consen   75 WVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF----------CMS--------TIRTHKDYVKCLAYIAKNNELVA-S  135 (735)
T ss_pred             HHhhHHhhcCCCceEEecCCceEEEeecccCcch----------hHh--------hhhcccchheeeeecccCceeEE-e
Confidence            4456666667877888999988888877511011          210        00011345667777332444544 4


Q ss_pred             CC--CCeEEEeCCCCeeEEceec-------cCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          150 AY--FGLMKVGPEGGLATSLATE-------AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       150 ~~--~gl~~~d~~~g~~~~~~~~-------~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      ++  +.|+.+|..++..+.+.+.       ....+....+.+|..+.|.+.++...                 .+-|..|
T Consensus       136 gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt-----------------ek~lr~w  198 (735)
T KOG0308|consen  136 GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT-----------------EKDLRLW  198 (735)
T ss_pred             cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc-----------------ccceEEe
Confidence            44  3488888887743222210       11023446677888888877777532                 3557778


Q ss_pred             eCCCCeEE-EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318          221 DPTTKQTT-VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  264 (391)
Q Consensus       221 d~~~~~~~-~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~  264 (391)
                      |+.+++-. .+...-.....+.++.||+.++ +.+..+.|..+++
T Consensus       199 Dprt~~kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdL  242 (735)
T KOG0308|consen  199 DPRTCKKIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDL  242 (735)
T ss_pred             ccccccceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeec
Confidence            98876433 3332222344677788887554 4355555555554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=86.02  E-value=43  Score=34.22  Aligned_cols=159  Identities=16%  Similarity=0.123  Sum_probs=85.6

Q ss_pred             eEEE-ccCCCeeEEEecCCEEEEEeCCce-e-EEEeecCCCcccCCCC-CCccccccccCccCccceEEEecCCCcEEEE
Q 016318           73 SMAF-DPLGRGPYTGVADGRILFWDGLKW-T-DFAFTSNNRSELCNPK-PIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        73 ~i~~-d~~G~~ly~~~~~g~I~~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      +++. .++..++.+|.-|++|..|+-... . ..+..  +....|+.. |+          ......++..+ .+.++|+
T Consensus       122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~--n~~t~~sl~sG~----------k~siYSLA~N~-t~t~ivs  188 (735)
T KOG0308|consen  122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF--NNVTVNSLGSGP----------KDSIYSLAMNQ-TGTIIVS  188 (735)
T ss_pred             eeeecccCceeEEecCCCccEEEEEccCcchhhhhhc--cccccccCCCCC----------ccceeeeecCC-cceEEEe
Confidence            4555 456665666778899999987621 1 11111  100112110 10          11123555554 5667776


Q ss_pred             ECCCC-eEEEeCCCCeeE-EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          149 DAYFG-LMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       149 d~~~g-l~~~d~~~g~~~-~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      ..-.+ |..+|+.+++.. .+..+.     .....+.+++||+-.++.++                 +|.|-.||..-.+
T Consensus       189 Ggtek~lr~wDprt~~kimkLrGHT-----dNVr~ll~~dDGt~~ls~sS-----------------DgtIrlWdLgqQr  246 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTCKKIMKLRGHT-----DNVRVLLVNDDGTRLLSASS-----------------DGTIRLWDLGQQR  246 (735)
T ss_pred             cCcccceEEeccccccceeeeeccc-----cceEEEEEcCCCCeEeecCC-----------------CceEEeeeccccc
Confidence            54444 778899886422 222221     24677888999987788766                 5677777764322


Q ss_pred             EE-EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318          227 TT-VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       227 ~~-~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~  267 (391)
                      .. .+.-.-.....++.+++=+.+|.+ ...+.|+|-++...
T Consensus       247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG-~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  247 CLATYIVHKEGVWALQSSPSFTHVYSG-GRDGNIYRTDLRNP  287 (735)
T ss_pred             eeeeEEeccCceEEEeeCCCcceEEec-CCCCcEEecccCCc
Confidence            11 111111124455566666657666 34567888877654

>PHA03098 kelch-like protein; Provisional

Probab=85.85  E-value=43  Score=33.98  Aligned_cols=75  Identities=11%  Similarity=0.079  Sum_probs=43.3

Q ss_pred             CCcEEEEECCC------CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318          142 TGDLYIADAYF------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       142 ~g~L~V~d~~~------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      ++.|||.....      .+.++|+.+++.+........   .. ..-+..-+|.||+......           ......
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~---r~-~~~~~~~~~~iYv~GG~~~-----------~~~~~~  406 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP---RY-NPCVVNVNNLIYVIGGISK-----------NDELLK  406 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC---Cc-cceEEEECCEEEEECCcCC-----------CCcccc
Confidence            57888865432      278899988877654322111   11 1122234678999753110           001135


Q ss_pred             eEEEEeCCCCeEEEec
Q 016318          216 RVLKYDPTTKQTTVLL  231 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~  231 (391)
                      .+.+||+.+++...+.
T Consensus       407 ~v~~yd~~t~~W~~~~  422 (534)
T PHA03098        407 TVECFSLNTNKWSKGS  422 (534)
T ss_pred             eEEEEeCCCCeeeecC
Confidence            6899999998887654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.60  E-value=40  Score=33.44  Aligned_cols=141  Identities=17%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .|.++..+|+|+.+.+ ..+|.-..+....++.-.                         .|.....+|.. +++.-|-+
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-------------------------~G~g~~~vw~~-~n~yAv~~   86 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-------------------------FGSGLSFVWSS-RNRYAVLE   86 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-------------------------EEE-SEEEE-T-SSEEEEE-
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-------------------------cCceeEEEEec-CccEEEEE
Confidence            5999999999995555 556655555433332221                         12334556665 55555555


Q ss_pred             CCCCeEEE-eCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          150 AYFGLMKV-GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       150 ~~~gl~~~-d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ....|..+ +.+....+.+..+      ..+.+|--   |.+....+                  ++.|..||.++++..
T Consensus        87 ~~~~I~I~kn~~~~~~k~i~~~------~~~~~If~---G~LL~~~~------------------~~~i~~yDw~~~~~i  139 (443)
T PF04053_consen   87 SSSTIKIYKNFKNEVVKSIKLP------FSVEKIFG---GNLLGVKS------------------SDFICFYDWETGKLI  139 (443)
T ss_dssp             TTS-EEEEETTEE-TT-----S------S-EEEEE----SSSEEEEE------------------TTEEEEE-TTT--EE
T ss_pred             CCCeEEEEEcCccccceEEcCC------cccceEEc---CcEEEEEC------------------CCCEEEEEhhHccee
Confidence            43333332 2211110111000      01222222   66555543                  246999999887654


Q ss_pred             EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          229 VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       229 ~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      .-.+. .....|.++++++.+.+.....--|.+++.+
T Consensus       140 ~~i~v-~~vk~V~Ws~~g~~val~t~~~i~il~~~~~  175 (443)
T PF04053_consen  140 RRIDV-SAVKYVIWSDDGELVALVTKDSIYILKYNLE  175 (443)
T ss_dssp             EEESS--E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred             eEEec-CCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence            33221 1237899999999777764333345566554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=85.35  E-value=12  Score=33.95  Aligned_cols=151  Identities=15%  Similarity=0.122  Sum_probs=78.4

Q ss_pred             eEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC--eEEEeCC
Q 016318           83 PYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG--LMKVGPE  160 (391)
Q Consensus        83 ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g--l~~~d~~  160 (391)
                      +.+|...|.++.|+-..-..+...... ...|.+         ........+.+.+++..++=..+.....  .+.++-+
T Consensus       168 llaGyEsghvv~wd~S~~~~~~~~~~~-~kv~~~---------~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s  237 (323)
T KOG0322|consen  168 LLAGYESGHVVIWDLSTGDKIIQLPQS-SKVESP---------NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS  237 (323)
T ss_pred             EEEeccCCeEEEEEccCCceeeccccc-cccccc---------hhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence            456778899999987621222222111 112221         1112344556666653222223323333  3444555


Q ss_pred             CCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcce
Q 016318          161 GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNG  239 (391)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ng  239 (391)
                      ++..+.-...  ..+.-..+++.+-+|+.|..|. +                -++|+-.|+..+.+.-.+. ..-...|.
T Consensus       238 ~gslq~~~e~--~lknpGv~gvrIRpD~KIlATA-G----------------WD~RiRVyswrtl~pLAVLkyHsagvn~  298 (323)
T KOG0322|consen  238 TGSLQIRKEI--TLKNPGVSGVRIRPDGKILATA-G----------------WDHRIRVYSWRTLNPLAVLKYHSAGVNA  298 (323)
T ss_pred             cCcccccceE--EecCCCccceEEccCCcEEeec-c----------------cCCcEEEEEeccCCchhhhhhhhcceeE
Confidence            5543321110  0111246788899999998775 2                2467777776665543322 22246789


Q ss_pred             EEEccCCCEEEEEeCCCCeEEEEE
Q 016318          240 LSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       240 ia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                      +|++||-. +..+.+...||..+.
T Consensus       299 vAfspd~~-lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  299 VAFSPDCE-LMAAASKDARISLWK  321 (323)
T ss_pred             EEeCCCCc-hhhhccCCceEEeee
Confidence            99999966 555556666765543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.08  E-value=6.6  Score=37.31  Aligned_cols=88  Identities=16%  Similarity=0.143  Sum_probs=58.3

Q ss_pred             CCCceEEEEeCCCCeEEEeccCC--CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCC
Q 016318          212 EDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE  289 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~~~~--~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~  289 (391)
                      ...+.+-.||+..++--+..-.+  ..-..+.+.|++++||++++ .+.+..|++.+.+... ..|....|.+.+|.+.+
T Consensus       223 T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g-~~~kg~tGsirsih~hp  300 (412)
T KOG3881|consen  223 TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLG-CGLKGITGSIRSIHCHP  300 (412)
T ss_pred             ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeec-cccCCccCCcceEEEcC
Confidence            34578889999865433332121  22356788999999999965 5689999877643211 12445678899999999


Q ss_pred             CCCEEEEEcCCC
Q 016318          290 KGEFWVAIHCRR  301 (391)
Q Consensus       290 ~G~lwva~~~~~  301 (391)
                      .+.+.....-.|
T Consensus       301 ~~~~las~GLDR  312 (412)
T KOG3881|consen  301 THPVLASCGLDR  312 (412)
T ss_pred             CCceEEeeccce
Confidence            887776554443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.71  E-value=17  Score=34.79  Aligned_cols=91  Identities=19%  Similarity=0.219  Sum_probs=56.1

Q ss_pred             cEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          144 DLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       144 ~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      -||+.. ..   +|+.++.+++..+.+...   . ...-.-+.+|++ +.|||+....             ....-.|++
T Consensus       250 ~l~~s~-~~G~~hly~~~~~~~~~~~lT~G---~-~~V~~i~~~d~~~~~iyf~a~~~-------------~p~~r~lY~  311 (353)
T PF00930_consen  250 FLWISE-RDGYRHLYLYDLDGGKPRQLTSG---D-WEVTSILGWDEDNNRIYFTANGD-------------NPGERHLYR  311 (353)
T ss_dssp             EEEEEE-TTSSEEEEEEETTSSEEEESS-S---S-S-EEEEEEEECTSSEEEEEESSG-------------GTTSBEEEE
T ss_pred             EEEEEE-cCCCcEEEEEcccccceeccccC---c-eeecccceEcCCCCEEEEEecCC-------------CCCceEEEE
Confidence            356665 43   399999999887765422   1 111123456775 4799987541             112346999


Q ss_pred             EeCC-CCeEEEeccCCCCcceEEEccCCCEEEEE
Q 016318          220 YDPT-TKQTTVLLRNLQFPNGLSLSKDKSFFVFC  252 (391)
Q Consensus       220 ~d~~-~~~~~~~~~~~~~~ngia~~~d~~~l~v~  252 (391)
                      .+.+ +++.+.+......-..++++||++++...
T Consensus       312 v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  312 VSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             EETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             EEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence            9998 88887776443333489999999965443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=84.31  E-value=0.81  Score=28.24  Aligned_cols=20  Identities=30%  Similarity=0.715  Sum_probs=17.2

Q ss_pred             cCCcceeecCCCCEEEEeCC
Q 016318          177 RFTNDLDIDDEGNVYFTDSS  196 (391)
Q Consensus       177 ~~~~~l~~d~~G~ly~td~~  196 (391)
                      ..+++|++|++|++|++..+
T Consensus        13 ~~~~~IavD~~GNiYv~G~T   32 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYT   32 (38)
T ss_pred             eeEEEEEECCCCCEEEEEee
Confidence            36899999999999999744

SBBP stands for Seven Bladed Beta Propeller.

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=84.06  E-value=41  Score=32.24  Aligned_cols=194  Identities=12%  Similarity=0.079  Sum_probs=98.0

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~  151 (391)
                      ..|.|..+|+.+..|..|-++..|+.++.-.-....+        .+     +.-++.-....+++|+..+..||-+...
T Consensus        60 NAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP--------I~-----~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   60 NALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKP--------IG-----VMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             ceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCC--------ce-----eccCccccceEEEEEccCCeeEecCCCc
Confidence            4667888888666666666666665541100000000        00     0112223456789998733335544333


Q ss_pred             CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe----E
Q 016318          152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ----T  227 (391)
Q Consensus       152 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~----~  227 (391)
                      ..+.+-|..+.+.-.+....+  .-.-.++|.+.|-.+++++.+.                 .++|..+|....+    .
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~--~~~~VY~m~~~P~DN~~~~~t~-----------------~~~V~~~D~Rd~~~~~~~  187 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENN--NRGDVYHMDQHPTDNTLIVVTR-----------------AKLVSFIDNRDRQNPISL  187 (609)
T ss_pred             ceeEeeecccceeeeeecccC--cccceeecccCCCCceEEEEec-----------------CceEEEEeccCCCCCCce
Confidence            347777777654333322221  1124677888887777776543                 4778888865443    1


Q ss_pred             EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec--ccCCCC------CceEeCCCCCEEEEEcC
Q 016318          228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPGYP------DNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~--~~~g~p------~~i~~d~~G~lwva~~~  299 (391)
                      ..+......-..+.+.|..-.|+.+...+..+-.+++.-+   ...++.  ...|+|      .+...+++|+-+.+...
T Consensus       188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~---~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR  264 (609)
T KOG4227|consen  188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ---ARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR  264 (609)
T ss_pred             eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc---cchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence            1111111122345677766555555555555555543221   111221  122333      35677888887777654


Q ss_pred             C
Q 016318          300 R  300 (391)
Q Consensus       300 ~  300 (391)
                      .
T Consensus       265 ~  265 (609)
T KOG4227|consen  265 G  265 (609)
T ss_pred             c
Confidence            4

>PHA02790 Kelch-like protein; Provisional

Probab=83.41  E-value=52  Score=32.98  Aligned_cols=100  Identities=10%  Similarity=0.066  Sum_probs=55.7

Q ss_pred             CCcEEEEECC---CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEE
Q 016318          142 TGDLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVL  218 (391)
Q Consensus       142 ~g~L~V~d~~---~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~  218 (391)
                      +|.||+....   ..+.++|+.+++.+.+.....    .....-++.-+|.||+.....              .....+.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~----~r~~~~~~~~~g~IYviGG~~--------------~~~~~ve  379 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK----PRCNPAVASINNVIYVIGGHS--------------ETDTTTE  379 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC----CCcccEEEEECCEEEEecCcC--------------CCCccEE
Confidence            6889987543   237888988877665532111    111222333478999986321              0123578


Q ss_pred             EEeCCCCeEEEeccCCCCcc--eEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318          219 KYDPTTKQTTVLLRNLQFPN--GLSLSKDKSFFVFCEGSVGRLHKYWL  264 (391)
Q Consensus       219 ~~d~~~~~~~~~~~~~~~~n--gia~~~d~~~l~v~et~~~~I~~~~~  264 (391)
                      +|||++.+..... .+..|.  ..+..-+++ ||+..   +...+|+.
T Consensus       380 ~ydp~~~~W~~~~-~m~~~r~~~~~~~~~~~-IYv~G---G~~e~ydp  422 (480)
T PHA02790        380 YLLPNHDQWQFGP-STYYPHYKSCALVFGRR-LFLVG---RNAEFYCE  422 (480)
T ss_pred             EEeCCCCEEEeCC-CCCCccccceEEEECCE-EEEEC---CceEEecC
Confidence            9999998887653 232221  112223554 88873   34566764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=83.00  E-value=6.8  Score=36.96  Aligned_cols=151  Identities=13%  Similarity=0.137  Sum_probs=79.8

Q ss_pred             ceEEEccCC-CeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           72 ESMAFDPLG-RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        72 e~i~~d~~G-~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      .++-+.+-. .+|-++..|+.|+.+|.-+-..+..                     ....-|+.+|++.|+.-+.-+|+.
T Consensus       191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K---------------------Vi~~mRTN~IswnPeafnF~~a~E  249 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKK---------------------VILTMRTNTICWNPEAFNFVAANE  249 (433)
T ss_pred             eEEecCCCcchheeeeccCCceEEEecccCCccce---------------------eeeeccccceecCccccceeeccc
Confidence            345555433 3344445778888887652221111                     112456778888883333444555


Q ss_pred             CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe
Q 016318          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL  230 (391)
Q Consensus       151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  230 (391)
                      ...||.+|...= -+.+. ...+ ..+...++++.|.|.=+++.+-                 +..|-.|....+..+-+
T Consensus       250 D~nlY~~DmR~l-~~p~~-v~~d-hvsAV~dVdfsptG~Efvsgsy-----------------DksIRIf~~~~~~SRdi  309 (433)
T KOG0268|consen  250 DHNLYTYDMRNL-SRPLN-VHKD-HVSAVMDVDFSPTGQEFVSGSY-----------------DKSIRIFPVNHGHSRDI  309 (433)
T ss_pred             cccceehhhhhh-cccch-hhcc-cceeEEEeccCCCcchhccccc-----------------cceEEEeecCCCcchhh
Confidence            567888886521 11111 1111 1234567888899987777654                 12333333333433332


Q ss_pred             --ccCCCCcceEEEccCCCEEEEEeC-CCCeEEEEE
Q 016318          231 --LRNLQFPNGLSLSKDKSFFVFCEG-SVGRLHKYW  263 (391)
Q Consensus       231 --~~~~~~~ngia~~~d~~~l~v~et-~~~~I~~~~  263 (391)
                        ...++..-+|.++-|.++++-... .+-|+|+-.
T Consensus       310 YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  310 YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             hhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence              234566678999999996654322 223666654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=82.26  E-value=57  Score=32.61  Aligned_cols=172  Identities=16%  Similarity=0.048  Sum_probs=92.7

Q ss_pred             CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC-CCCeEEE
Q 016318           79 LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA-YFGLMKV  157 (391)
Q Consensus        79 ~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~-~~gl~~~  157 (391)
                      ++..+-+|+.++.|..++-........                   ..........|+.+.+ +++...... .+.++.+
T Consensus       269 ~~~~lssGsr~~~I~~~dvR~~~~~~~-------------------~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iw  328 (484)
T KOG0305|consen  269 NSSVLSSGSRDGKILNHDVRISQHVVS-------------------TLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIW  328 (484)
T ss_pred             cCceEEEecCCCcEEEEEEecchhhhh-------------------hhhcccceeeeeEECC-CCCeeccCCCccceEec
Confidence            455567778888887775431000000                   0111233456788887 555544322 2447777


Q ss_pred             eCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCC
Q 016318          158 GPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQF  236 (391)
Q Consensus       158 d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~  236 (391)
                      |..............    .....++..| ..+|..+..               +..++.+..+|..+++...-.+.-..
T Consensus       329 d~~~~~p~~~~~~H~----aAVKA~awcP~q~~lLAsGG---------------Gs~D~~i~fwn~~~g~~i~~vdtgsQ  389 (484)
T KOG0305|consen  329 DGLSPEPKFTFTEHT----AAVKALAWCPWQSGLLATGG---------------GSADRCIKFWNTNTGARIDSVDTGSQ  389 (484)
T ss_pred             cCCCccccEEEeccc----eeeeEeeeCCCccCceEEcC---------------CCcccEEEEEEcCCCcEecccccCCc
Confidence            764322222112211    1345567777 345555543               34467788899988877665555567


Q ss_pred             cceEEEccCCCEEEEEeC-CCC--eEEEEEeccccCccceeecccCCCC---CceEeCCCCCEEEE
Q 016318          237 PNGLSLSKDKSFFVFCEG-SVG--RLHKYWLIGEKAGNLEAFAILPGYP---DNVRTNEKGEFWVA  296 (391)
Q Consensus       237 ~ngia~~~d~~~l~v~et-~~~--~I~~~~~~g~~~g~~~~~~~~~g~p---~~i~~d~~G~lwva  296 (391)
                      ...+.+++..+-+..+-- ..+  .||+|.    .   ......+.|..   -.++.+++|...+.
T Consensus       390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~p----s---~~~~~~l~gH~~RVl~la~SPdg~~i~t  448 (484)
T KOG0305|consen  390 VCSLIWSKKYKELLSTHGYSENQITLWKYP----S---MKLVAELLGHTSRVLYLALSPDGETIVT  448 (484)
T ss_pred             eeeEEEcCCCCEEEEecCCCCCcEEEEecc----c---cceeeeecCCcceeEEEEECCCCCEEEE
Confidence            778999998876665532 223  566662    1   12222233322   24677888874443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=81.64  E-value=32  Score=31.80  Aligned_cols=117  Identities=15%  Similarity=0.139  Sum_probs=73.7

Q ss_pred             CccCccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhhee
Q 016318          128 HICGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       128 ~~~g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~  206 (391)
                      ...|...-+.|+| +|.+++.... ..|+..+..+. .+-+.... + -.....++...+||+..++.+.          
T Consensus        45 gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lk-g-HsgAVM~l~~~~d~s~i~S~gt----------  110 (338)
T KOG0265|consen   45 GHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGD-CENFWVLK-G-HSGAVMELHGMRDGSHILSCGT----------  110 (338)
T ss_pred             CCcceEEEEEECC-CCCeEeecCCcceEEEEecccc-ccceeeec-c-ccceeEeeeeccCCCEEEEecC----------
Confidence            3456678889999 7888877554 34666664432 23222110 1 1124567777889988887643          


Q ss_pred             eecccCCCceEEEEeCCCCeEEE-eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          207 LVFSAEDTGRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                             +-++..||.++|+... ....-.+.|.++...-|-.+..+.+..+.+..+++.
T Consensus       111 -------Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen  111 -------DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             -------CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence                   5689999999887543 334445777777655666566665556667777654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=81.22  E-value=47  Score=30.96  Aligned_cols=86  Identities=15%  Similarity=0.171  Sum_probs=55.0

Q ss_pred             eEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC-eEEEeCCC
Q 016318           83 PYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEG  161 (391)
Q Consensus        83 ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~  161 (391)
                      +..+..||.|..|+.+.|.......                    ...++..+++++| .+.|-++-.+.+ +-.+|.-.
T Consensus       100 LlS~sdDG~i~iw~~~~W~~~~slK--------------------~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~  158 (362)
T KOG0294|consen  100 LLSGSDDGHIIIWRVGSWELLKSLK--------------------AHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVR  158 (362)
T ss_pred             eeeecCCCcEEEEEcCCeEEeeeec--------------------ccccccceeEecC-CCceEEEEcCCceeeeehhhc
Confidence            8889999999999988886654322                    1246688999999 788877765555 44556655


Q ss_pred             CeeEEceeccCCCcccCCcceeecCCCC-EEEEe
Q 016318          162 GLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTD  194 (391)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td  194 (391)
                      |+.......     -..+.-+..++.|. +++..
T Consensus       159 Gr~a~v~~L-----~~~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  159 GRVAFVLNL-----KNKATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             Cccceeecc-----CCcceeeEEcCCCCEEEEEe
Confidence            543322111     11334477788886 44443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=80.50  E-value=43  Score=30.10  Aligned_cols=98  Identities=14%  Similarity=0.213  Sum_probs=60.4

Q ss_pred             cceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceee-cCCCCEEEEeCCCcccchhheeeeccc
Q 016318          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~-d~~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      ...|-+||.++.++.+....-++.+|.++|+++...+...    .+...++- ..++.|.-                  +
T Consensus       117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt----DYvH~vv~R~~~~qils------------------G  174 (325)
T KOG0649|consen  117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT----DYVHSVVGRNANGQILS------------------G  174 (325)
T ss_pred             cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc----ceeeeeeecccCcceee------------------c
Confidence            4678899877888887644449999999999886544321    13444443 33444433                  3


Q ss_pred             CCCceEEEEeCCCCeEEEeccCCCCc------ce---EEEccCCCEEEEE
Q 016318          212 EDTGRVLKYDPTTKQTTVLLRNLQFP------NG---LSLSKDKSFFVFC  252 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~~~~~~~------ng---ia~~~d~~~l~v~  252 (391)
                      ..+|.+-.+|.++++-....+....+      +|   .|++-+++++...
T Consensus       175 ~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG  224 (325)
T KOG0649|consen  175 AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG  224 (325)
T ss_pred             CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec
Confidence            34688888999888765554332222      22   4566677755444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	391
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		4e-41
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		6e-41
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		7e-39
2iax_A	312	Crystal Structure Of Squid Ganglion Dfpase D232s Mu		3e-05
2iaq_A	312	Crystal Structure Of Squid Ganglion Dfpase S271a Mu		3e-05
2iao_A	312	Crystal Structure Of Squid Ganglion Dfpase E37q Mut		3e-05
2iav_A	312	Crystal Structure Of Squid Ganglion Dfpase H287a Mu		3e-05
2iap_A	312	Crystal Structure Of Squid Ganglion Dfpase E21q Mut		3e-05
1e1a_A	314	Crystal Structure Of Dfpase From Loligo Vulgaris Le		3e-05
2iar_A	312	Crystal Structure Of Squid Ganglion Dfpase W244h Mu		3e-05
2iat_A	312	Crystal Structure Of Squid Ganglion Dfpase W244l Mu		3e-05
2ias_A	312	Crystal Structure Of Squid Ganglion Dfpase W244f Mu		3e-05
2iau_A	312	Crystal Structure Of Squid Ganglion Dfpase W244y Mu		3e-05
3hli_A	314	Diisopropyl Fluorophosphatase (Dfpase), Active Site		5e-05
3hlh_A	314	Diisopropyl Fluorophosphatase (Dfpase), Active Site		5e-05
3li3_A	314	Diisopropyl Fluorophosphatase (Dfpase), D121e Mutan		8e-05
2iaw_A	312	Crystal Structure Of Squid Ganglion Dfpase N175d Mu		1e-04
2gvx_A	314	Structure Of Diisopropyl Fluorophosphatase (Dfpase)		1e-04
2gvu_A	314	Crystal Structure Of Diisopropyl Fluorophosphatase		1e-04
3li5_A	314	Diisopropyl Fluorophosphatase (Dfpase), E21q,N120d,		3e-04
3li4_A	314	Diisopropyl Fluorophosphatase (Dfpase), N120d,N175d		3e-04
2dso_A	333	Crystal Structure Of D138n Mutant Of Drp35, A 35kda		8e-04

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score =  165 bits (417), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 162/327 (49%), Gaps = 41/327 (12%)
Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSN--NRSELCNPKPIATSYLK 125
            P S  FD   +G YT V DGR++ ++G    + DFA+ S   N++  C     A    +
Sbjct: 20  APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKA-FCENSTDA----E 74
Query: 126 NEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
              +CGR   + ++ +   LYI D Y+ L  VG EGG AT LAT  +GVP ++   + +D
Sbjct: 75  KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 134
Query: 186 DE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK 244
              G VYFTD ST Y  R   Q++ +++ TGR++KYDP+TK+TT+LL+ L  P G  +S 
Sbjct: 135 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 194
Query: 245 DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLY 304
           D SF +  E    ++ KYWL G K G  E    +P  P N++ N  G FWV         
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 244
Query: 305 SHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA 364
                              S+      ++ GR+    +K+   G IL+V+        + 
Sbjct: 245 -------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEH 285
Query: 365 ISEVEEKDGKLWMGSVLMPFVA--VYD 389
             +++E DG L++G++    V   VYD
Sbjct: 286 FEQIQEHDGLLYIGTLFHGSVGILVYD 312

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score =  164 bits (416), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 160/323 (49%), Gaps = 39/323 (12%)
Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSN--NRSELCNPKPIATSYLK 125
            P S  FD   +G YT V DGR++ ++G    + DFA+ S   N++  C     A    +
Sbjct: 11  APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKA-FCENSTDA----E 65
Query: 126 NEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
              +CGR   + ++ +   LYI D Y+ L  VG EGG AT LAT  +GVP ++   + +D
Sbjct: 66  KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 125
Query: 186 DE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK 244
              G VYFTD ST Y  R   Q++ +++ TGR++KYDP+TK+TT+LL+ L  P G  +S 
Sbjct: 126 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 185
Query: 245 DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLY 304
           D SF +  E    ++ KYWL G K G  E    +P  P N++ N  G FWV         
Sbjct: 186 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 235
Query: 305 SHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA 364
                              S+      ++ GR+    +K+   G IL+V+        + 
Sbjct: 236 -------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEH 276
Query: 365 ISEVEEKDGKLWMGSVLMPFVAV 387
             +++E DG L++G++    V +
Sbjct: 277 FEQIQEHDGLLYIGTLFHGSVGI 299

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score =  157 bits (398), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 155/327 (47%), Gaps = 41/327 (12%)
Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSN--NRSELCNPKPIATSYLK 125
            P S  FD   +G YT V DGR+  ++G    + DFA+ S   N++  C     A    +
Sbjct: 20  APNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYASPYWNKA-FCENSTDA----E 74
Query: 126 NEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
              +CGR   + ++ +    YI D Y+ L  VG EGG AT LAT  +GVP ++   + +D
Sbjct: 75  KRPLCGRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 134
Query: 186 DE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK 244
              G VYFTD ST Y  R   Q+  +++ TGR+ KYDP+TK+TT+L + L  P G  +S 
Sbjct: 135 QRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSA 194
Query: 245 DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLY 304
           D SF +  E    ++ KYWL G K G  E    +P  P N++ N  G FWV+        
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253
Query: 305 SHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA 364
            H                            GR+    +K+   G IL+V+        + 
Sbjct: 254 XH----------------------------GRVDPKGIKFDEFGNILEVIPLPPPFAGEH 285
Query: 365 ISEVEEKDGKLWMGSVLMPFVA--VYD 389
             +++E DG L++G++    V   VYD
Sbjct: 286 FEQIQEHDGLLYIGTLFHGSVGILVYD 312

>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177

>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177

>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177

>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177

>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177

>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris Length = 314

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 71  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFPNG+++
Sbjct: 131 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 179

>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177

>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177

>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177

>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177

>pdb|3HLI|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site Mutants Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 21/121 (17%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 71  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFT---------DSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLS 241
           + T         D++ + Q +      F+ +  G++++ D             QFPNG++
Sbjct: 131 WITAPAGEVAPADATASMQEKFGSIYCFTTD--GQMIQVDTA----------FQFPNGIA 178
Query: 242 L 242
           +
Sbjct: 179 V 179

>pdb|3HLH|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site Mutants Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 21/121 (17%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 71  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFT---------DSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLS 241
           + T         D++ + Q +      F+ +  G++++ D             QFPNG++
Sbjct: 131 WITAPAGEVAPADATASMQEKFGSIYCFTTD--GQMIQVDTA----------FQFPNGIA 178
Query: 242 L 242
           +
Sbjct: 179 V 179

>pdb|3LI3|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), D121e Mutant Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  N+   D EGN+
Sbjct: 71  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNECAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFPNG+++
Sbjct: 131 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 179

>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant Length = 312

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFP+G+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPDGIAV 177

>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase), Mutant D229n N175D Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 71  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFP+G+++
Sbjct: 131 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPDGIAV 179

>pdb|2GVU|A Chain A, Crystal Structure Of Diisopropyl Fluorophosphatase (Dfpase), Mutant D229n N120D Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  +D   D EGN+
Sbjct: 71  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFPNG+++
Sbjct: 131 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 179

>pdb|3LI5|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), E21q,N120d,N175d,D229n Mutant Length = 314

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  +D   D EGN+
Sbjct: 71  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFP+G+++
Sbjct: 131 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPDGIAV 179

>pdb|3LI4|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), N120d,N175d,D229n Mutant Length = 314

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  +D   D EGN+
Sbjct: 71  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
           + T  +      ++ + +   E  G +  +  T  Q   +    QFP+G+++
Sbjct: 131 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPDGIAV 179

>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug Responsive Protein From Staphylococcus Aureus Length = 333

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 180 NDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNG 239
           ND+  D +G  YFTD              +S    G V    P  +  T +++N+   NG
Sbjct: 138 NDMVFDSKGGFYFTDFRG-----------YSTNPLGGVYYVSPDFRTVTPIIQNISVANG 186
Query: 240 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY------PDNVRTNEKGEF 293
           ++LS D+      E +  RLH+  L  +        A +P Y      PD+   +     
Sbjct: 187 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL 246
Query: 294 WVAIH 298
           +VA++
Sbjct: 247 YVAMY 251

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	391
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	1e-111
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	3e-36
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	1e-33
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	6e-17
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	1e-16
2p4o_A	306	Hypothetical protein; putative lactonase, structur	3e-15
2p4o_A	306	Hypothetical protein; putative lactonase, structur	5e-06
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	4e-15
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-13
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-10
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	5e-10
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-12
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	7e-11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-09
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	5e-07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	9e-06
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	6e-04
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-04
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	3e-04
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	2e-04
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	5e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	5e-04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	6e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	8e-04
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	8e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  326 bits (837), Expect = e-111
 Identities = 101/335 (30%), Positives = 156/335 (46%), Gaps = 35/335 (10%)

Query: 60  SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFW--DGLKWTDFAFTSNNRSELCNPK 117
            EI        P S  FD   +G YT V DGR++ +      + DFA+ S   ++     
Sbjct: 10  KEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCEN 69

Query: 118 PIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLR 177
                  +   +CGR   + ++ +   LYI D Y+ L  VG EGG AT LAT  +GVP +
Sbjct: 70  STDA---EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFK 126

Query: 178 FTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQF 236
           +   + +D   G VYFTD ST Y  R   Q++ +++ TGR++KYDP+TK+TT+LL+ L  
Sbjct: 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHV 186

Query: 237 PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVA 296
           P G  +S D SF +  E    ++ KYWL G K G  E    +P  P N++ N  G FWV+
Sbjct: 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245

Query: 297 IHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLED 356
                                              ++ GR+    +K+   G IL+V+  
Sbjct: 246 SSEELDG----------------------------NMHGRVDPKGIKFDEFGNILEVIPL 277

Query: 357 SKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 391
                 +   +++E DG L++G++    V +    
Sbjct: 278 PPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score =  133 bits (337), Expect = 3e-36
 Identities = 59/310 (19%), Positives = 98/310 (31%), Gaps = 43/310 (13%)

Query: 69  QGPESMAFDPLGR-------GPYTGVADGRILFWD--GLKWTDFAFTSNNRSELCNPKPI 119
            G E   FD  G            G   G IL  D    K T       N          
Sbjct: 18  PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN---------- 67

Query: 120 ATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFT 179
                      G P G + D+    L++AD   GL+ V  +G        ++EG  ++  
Sbjct: 68  --------GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGC 119

Query: 180 NDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNG 239
           ND   D EGN++ T  +   +           E  G +  +    +    +    QFPNG
Sbjct: 120 NDCAFDYEGNLWITAPA--GEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDTAFQFPNG 176

Query: 240 LSLSKD----KSFFVFCEGSVGRLHKYWLIGE-KAGNLEAFAILP----GYPDNVRTNEK 290
           +++           +  E    +L  Y + G  K  N + +  +P    G  D +  +E 
Sbjct: 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED 236

Query: 291 GEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKI 350
               VA        SH+    P      +++    +    +H   +   + V       +
Sbjct: 237 NNLLVANWGS----SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAV 292

Query: 351 LQVLEDSKGK 360
            +      GK
Sbjct: 293 WKFEWQRNGK 302

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  127 bits (320), Expect = 1e-33
 Identities = 53/334 (15%), Positives = 91/334 (27%), Gaps = 49/334 (14%)

Query: 69  QGPESMAFDP------------LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNP 116
            G E +   P             G   +     G+IL  D              SEL   
Sbjct: 50  NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMD------LNEKEPAVSEL--E 101

Query: 117 KPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKV----GPEGGLATSLATEAE 172
               T  + + +  G    +  D  T  L + +       V      E   +        
Sbjct: 102 IIGNTLDISSFNPHGISTFIDDDN-TVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160

Query: 173 GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR 232
              L   ND+      + Y T+    Y    +++                +     V+  
Sbjct: 161 HKLLPSVNDIVAVGPEHFYATNDH--YFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE 218

Query: 233 NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVR-TNEKG 291
              F NG+++S D  +    E    ++H Y                    DN+      G
Sbjct: 219 GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG 278

Query: 292 EFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKIL 351
           + WV  H          A  P     +L++                       S E K+ 
Sbjct: 279 DLWVGCHPNGMRIFFYDAENPPGSE-VLRIQD-------------------ILSEEPKVT 318

Query: 352 QVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFV 385
            V  ++ G V++  +      GKL +G+V    +
Sbjct: 319 VVYAEN-GTVLQGSTVAAVYKGKLLIGTVFHKAL 351

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 80.2 bits (198), Expect = 6e-17
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 25/179 (13%)

Query: 131 GRPLGLRFDKKTGDLYIAD-----AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
             P  ++  K  G L++       +  G+      G     +  +         +D+  D
Sbjct: 87  ANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS--TAYCIDDMVFD 143

Query: 186 DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKD 245
            +G  YFTD               S    G V    P  +  T +++N+   NG++LS D
Sbjct: 144 SKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTD 192

Query: 246 KSFFVFCEGSVGRLHKY------WLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH 298
           +      E +  RLH+         I      +  +      PD+   +     +VA++
Sbjct: 193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY 251

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 10/176 (5%)

Query: 131 GRPLGLRFDKKTGDLYIAD-AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN 189
               G   +K+ G L         L +    GG   S+A   EG  L   ND+ +  +G+
Sbjct: 69  HHQNGHCLNKQ-GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS 127

Query: 190 VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFF 249
           ++F+D +    +               V +  P     +  +R+   PNGL+     +  
Sbjct: 128 LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRDRVKPNGLAFLPSGNLL 186

Query: 250 VFCEGSVGRLHKYWLIGE-KAGNLEAFA-ILPGYPDNVRTNEKGEFWVA----IHC 299
           V  +      H+Y L    +         + PG  D +R +  G  W +    +H 
Sbjct: 187 V-SDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHV 241

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 75.0 bits (184), Expect = 3e-15
 Identities = 37/231 (16%), Positives = 60/231 (25%), Gaps = 37/231 (16%)

Query: 71  PESMAFDPLGRGPYTGVADGRILFWD--GLKWTDFAFTSNNRSELCNPKPIATSYLKNEH 128
            E++A  P G    T    G I+     G      A                        
Sbjct: 34  LENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVE--------------------- 71

Query: 129 ICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG 188
             G+  GL F    GDL         + V        ++ T        F N +    + 
Sbjct: 72  --GKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT 128

Query: 189 NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSF 248
                DS            +   + +G +    P   ++        FP    L +  +F
Sbjct: 129 QYLTADSYRGAIWL-----IDVVQPSGSIWLEHPMLARSNS---ESVFPAANGLKRFGNF 180

Query: 249 FVFCEGSVGRLHKYWLIGE-KAGNLEAFAILPGYPDNVRTNEKGEFWVAIH 298
                     L +  +    K G  E F       D+   + +G  + A H
Sbjct: 181 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN-IDDFAFDVEGNLYGATH 230

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 22/121 (18%)

Query: 178 FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFP 237
           F  +L    +G ++ T+                  + G ++   P   Q           
Sbjct: 33  FLENLASAPDGTIFVTNH-----------------EVGEIVSITPDGNQQIH-ATVEGKV 74

Query: 238 NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP--GYPDNVRTNEKGEFWV 295
           +GL+ + +         +   +    L+    G +E    LP   + + +      ++  
Sbjct: 75  SGLAFTSNGDLVA-TGWNADSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLT 132

Query: 296 A 296
           A
Sbjct: 133 A 133

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 12/179 (6%)

Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
               G   D +   L   +     +      G A  L     G  L   NDL +  +G +
Sbjct: 86  AFTNGNAVDAQ-QRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAI 144

Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFV 250
           +FTD     ++ +             V +  P        + +L  PNGL+ S D+    
Sbjct: 145 WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR-MADLDHPNGLAFSPDEQTLY 203

Query: 251 FCEGSVGRLHKYWL-----IGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVA----IHC 299
             +          +           +   FA +  G PD    +  G  W +    +  
Sbjct: 204 VSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCV 262

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 36/242 (14%), Positives = 66/242 (27%), Gaps = 55/242 (22%)

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           E        GP  +     G+  +T     +I   D          S    E   P P  
Sbjct: 12  EFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLD---------QSGRIKEFEVPTPD- 61

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFT 179
                      + + L      GD++  +     + K+  +GG            P    
Sbjct: 62  ----------AKVMCLIVS-SLGDIWFTENGANKIGKLSKKGGFTEY----PLPQPDSGP 106

Query: 180 NDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPN 238
             +     G+++FT  + +                 R+ K           L     +P 
Sbjct: 107 YGITEGLNGDIWFTQLNGD-----------------RIGKLTADGTIYEYDLPNKGSYPA 149

Query: 239 GLSLSKDKSFFV--FCEGSVGRLHKYWLIGEKAGNLEAFAILPG--YPDNVRTNEKGEFW 294
            ++L  D + +       S+GR+          G LE + +      P  + +   G  W
Sbjct: 150 FITLGSDNALWFTENQNNSIGRIT-------NTGKLEEYPLPTNAAAPVGITSGNDGALW 202

Query: 295 VA 296
             
Sbjct: 203 FV 204

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 25/202 (12%), Positives = 54/202 (26%), Gaps = 44/202 (21%)

Query: 60  SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPI 119
            E    N+   P  +         +T   +  I              +    E   P   
Sbjct: 137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT---------NTGKLEEYPLPTNA 187

Query: 120 ATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRF 178
           A            P+G+      G L+  +     + ++   G ++          P   
Sbjct: 188 A-----------APVGITSGND-GALWFVEIMGNKIGRITTTGEISEY----DIPTPNAR 231

Query: 179 TNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFP 237
            + +       ++FT+   N                 ++ +           L      P
Sbjct: 232 PHAITAGKNSEIWFTEWGAN-----------------QIGRITNDNTIQEYQLQTENAEP 274

Query: 238 NGLSLSKDKSFFVFCEGSVGRL 259
           +G++  KD S +   +  +G+L
Sbjct: 275 HGITFGKDGSVWFALKCKIGKL 296

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 51/232 (21%)

Query: 69  QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEH 128
                +               G I F      T+      N+    + K   T Y   + 
Sbjct: 62  AKVMCLIVSS----------LGDIWF------TE---NGANKIGKLSKKGGFTEYPLPQ- 101

Query: 129 ICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE 187
               P G+      GD++        + K+  +G +              +   + +  +
Sbjct: 102 PDSGPYGITEGL-NGDIWFTQLNGDRIGKLTADGTIYEY----DLPNKGSYPAFITLGSD 156

Query: 188 GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDK 246
             ++FT++  N                  + +   T K     L  N   P G++   D 
Sbjct: 157 NALWFTENQNN-----------------SIGRITNTGKLEEYPLPTNAAAPVGITSGNDG 199

Query: 247 SFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PGYPDNVRTNEKGEFWVA 296
           + +   E    ++ +        G +  + I      P  +   +  E W  
Sbjct: 200 ALWF-VEIMGNKIGRI----TTTGEISEYDIPTPNARPHAITAGKNSEIWFT 246

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 30/240 (12%), Positives = 69/240 (28%), Gaps = 51/240 (21%)

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           E+   NQ  GP  +     G+   T      I   +              +E   P P  
Sbjct: 7   ELNLTNQDTGPYGITVSDKGKVWITQHKANMISCIN---------LDGKITEYPLPTPD- 56

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFT 179
                      + + L      G+++  +     + ++  +G +        +  P    
Sbjct: 57  ----------AKVMCLTIS-SDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAP---- 101

Query: 180 NDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPN 238
             +     G+++FT+ + N                 R+ +     K     L     +P+
Sbjct: 102 YGITEGPNGDIWFTEMNGN-----------------RIGRITDDGKIREYELPNKGSYPS 144

Query: 239 GLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG--YPDNVRTNEKGEFWVA 296
            ++L  D + +     +   + +      ++G++  F I      P  +        W  
Sbjct: 145 FITLGSDNALWFTENQN-NAIGRI----TESGDITEFKIPTPASGPVGITKGNDDALWFV 199

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 26/232 (11%), Positives = 61/232 (26%), Gaps = 51/232 (21%)

Query: 69  QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEH 128
                +     G   +T  A  +I                   E   P P          
Sbjct: 57  AKVMCLTISSDGEVWFTENAANKIGRIT---------KKGIIKEYTLPNP---------- 97

Query: 129 ICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE 187
               P G+      GD++  +     + ++  +G +           P    + + +  +
Sbjct: 98  -DSAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYP----SFITLGSD 151

Query: 188 GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDK 246
             ++FT++  N                  + +   +   T   +      P G++   D 
Sbjct: 152 NALWFTENQNN-----------------AIGRITESGDITEFKIPTPASGPVGITKGNDD 194

Query: 247 SFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG--YPDNVRTNEKGEFWVA 296
           + +   E    ++ +       +G +  F I      P  +      + W  
Sbjct: 195 ALWF-VEIIGNKIGRI----TTSGEITEFKIPTPNARPHAITAGAGIDLWFT 241

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 20/192 (10%), Positives = 50/192 (26%), Gaps = 44/192 (22%)

Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHI 129
            P  +         +T   +  I              S + +E   P P +         
Sbjct: 142 YPSFITLGSDNALWFTENQNNAIGRIT---------ESGDITEFKIPTPAS--------- 183

Query: 130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG 188
              P+G+        L+  +     + ++   G +           P    + +      
Sbjct: 184 --GPVGITKGND-DALWFVEIIGNKIGRITTSGEITEFKIPTPNARP----HAITAGAGI 236

Query: 189 NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKS 247
           +++FT+   N                 ++ +           +      P+G+    +  
Sbjct: 237 DLWFTEWGAN-----------------KIGRLTSNNIIEEYPIQIKSAEPHGICFDGETI 279

Query: 248 FFVFCEGSVGRL 259
           +F      +G+L
Sbjct: 280 WFAMECDKIGKL 291

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 54/192 (28%)

Query: 66  NQIQGPESMAFDPLGRGPYTGVAD---GRILFW--DGLKWTDFAFTSNNRSELCNPKPIA 120
           + +  PE +A D  G   Y  VAD    R++         T   FT  N           
Sbjct: 105 DGLNYPEGLAVDTQGAV-Y--VADRGNNRVVKLAAGSKTQTVLPFTGLND---------- 151

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFT 179
                       P G+  D  +G++Y+ D     ++K+  E      L        +   
Sbjct: 152 ------------PDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTD----ITAP 194

Query: 180 NDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL-LRNLQFPN 238
             + +D+ G VY T+ +TN                 +V+K    +  +TVL    L  P 
Sbjct: 195 WGIAVDEAGTVYVTEHNTN-----------------QVVKLLAGSTTSTVLPFTGLNTPL 237

Query: 239 GLSLSKDKSFFV 250
            +++  D++ +V
Sbjct: 238 AVAVDSDRTVYV 249

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 29/168 (17%)

Query: 132 RPLGLRFDKKTGDLYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
            P G+  D   G++Y+      G +     G   T++        L     L +D  G V
Sbjct: 25  SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG---LYQPQGLAVDGAGTV 80

Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFV 250
           Y TD +                    V     +  QT +    L +P GL++    + +V
Sbjct: 81  YVTDFNNR-----------------VVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYV 123

Query: 251 FCEGSVGRLHKYWLIGEKAGNLEAFAILPG--YPDNVRTNEKGEFWVA 296
             +    R+ K           +      G   PD V  +  G  +V 
Sbjct: 124 -ADRGNNRVVKL----AAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVT 166

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 23/94 (24%)

Query: 131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN 189
             P G+  D+  G +Y+ +     ++K+      +T L        L     + +D +  
Sbjct: 192 TAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLP----FTGLNTPLAVAVDSDRT 246

Query: 190 VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223
           VY  D   +                 RV+K    
Sbjct: 247 VYVADRGND-----------------RVVKLTSL 263

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 43/208 (20%), Positives = 73/208 (35%), Gaps = 43/208 (20%)

Query: 59  NSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKP 118
            S+     QI  P+ +A D + R  Y               WTD   T  +R E+     
Sbjct: 382 GSQFVVTAQIAHPDGIAVDWVARNLY---------------WTD---TGTDRIEVTRLNG 423

Query: 119 IATSYLKNEHICGRPLGLRFDKKTGDLYIADA--YFGLMKVGPEGGLATSLATEAEGVPL 176
                L +E +   P  +  D   G +Y  D      + +   +G     L   + G P 
Sbjct: 424 TMRKILISEDL-EEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWP- 481

Query: 177 RFTNDLDID-DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ 235
              N L +D DEG +Y+ D+ T+         +      G        T +  ++   + 
Sbjct: 482 ---NGLALDYDEGKIYWGDAKTDK--------IEVMNTDG--------TGRRVLVEDKIP 522

Query: 236 FPNGLSLSKDKSFFV-FCEGSVGRLHKY 262
              G +L  D  ++  +   S+ R+HK 
Sbjct: 523 HIFGFTLLGDYVYWTDWQRRSIERVHKR 550

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 43/208 (20%)

Query: 59  NSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKP 118
           + +   ++ +  P+ +A D LG   Y               WTD   +  NR E+ N   
Sbjct: 74  SVQNVVVSGLLSPDGLACDWLGEKLY---------------WTD---SETNRIEVSNLDG 115

Query: 119 IATSYLKNEHICGRPLGLRFDKKTGDLYIAD--AYFGLMKVGPEGGLATSLATEAEGVPL 176
                L  + +  +P  +  D  +G +Y  D      + + G +G     +       P 
Sbjct: 116 SLRKVLFWQEL-DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP- 173

Query: 177 RFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ 235
              N L +D E   +Y+ D+  N+  ++                 D  T +  V+  +L 
Sbjct: 174 ---NGLTLDYEEQKLYWADAKLNFIHKS---------------NLD-GTNRQAVVKGSLP 214

Query: 236 FPNGLSLSKDKSFFV-FCEGSVGRLHKY 262
            P  L+L +D  ++  +   S+   +KY
Sbjct: 215 HPFALTLFEDILYWTDWSTHSILACNKY 242

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 17/146 (11%), Positives = 39/146 (26%), Gaps = 48/146 (32%)

Query: 133 PLGLRFDKKTGDLYIADAYFG-LMKV------------GPEGGLATSLATEAEGVPLRFT 179
           P  + +     + Y++D     + K+              +  +   L  EA        
Sbjct: 270 PYLIYYFV-DSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEAL---FAQP 325

Query: 180 NDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN------ 233
           N + +D++GN Y  D    Y                 + K D      + +         
Sbjct: 326 NGMTVDEDGNFYIVDGFKGY----------------CLRKLDILDGYVSTVAGQVDVASQ 369

Query: 234 ---------LQFPNGLSLSKDKSFFV 250
                      +P  +    +  +++
Sbjct: 370 IDGTPLEATFNYPYDICYDGEGGYWI 395

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 132 RPLGLRFDKKTGDLYIADAYFG--LMKVGPEGGLATSLA--------TEAEGVPLRFTN- 180
           +P G+  D+  G+ YI D + G  L K+    G  +++A         +   +   F   
Sbjct: 324 QPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYP 382

Query: 181 -DLDIDDEGNVYFTDSSTN 198
            D+  D EG  +  ++   
Sbjct: 383 YDICYDGEGGYWIAEAWGK 401

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 41/280 (14%), Positives = 73/280 (26%), Gaps = 91/280 (32%)

Query: 116 PKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVP 175
           PK I +   + +HI         D  +G L +    F  +    E  +            
Sbjct: 42  PKSILSKE-EIDHIIMSK-----DAVSGTLRL----FWTLLSKQEEMVQ----------- 80

Query: 176 LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ 235
            +F  ++               NY    F+      E     +      +Q   L  + Q
Sbjct: 81  -KFVEEVL------------RINY---KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 236 FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE---------------------- 273
                         VF + +V RL  Y  + +    L                       
Sbjct: 125 --------------VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 274 --AFAILPGYPDNVRTNEKGEFWVAI-HCRR--SLYSHLMALYPKIRHFLLKLP-ISAKT 327
             ++ +       +       FW+ + +C    ++   L  L  +I          S+  
Sbjct: 171 CLSYKVQCKMDFKI-------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 328 HYLIH-VGGRL-HAMAVKYSPEGKILQVLED-SKGKVVKA 364
              IH +   L   +  K       L VL +    K   A
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNA 261

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 56/303 (18%), Positives = 86/303 (28%), Gaps = 87/303 (28%)

Query: 1   MTPRGFLGLVILLLAM--------YCGLDPLKHSAISEF-PDFVSHKVDMPPWSLIPTVK 51
           +TP     L++  L              +P + S I+E   D ++       W     V 
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT------WDNWKHVN 351

Query: 52  DDKNLLQNSEIK-FLNQIQGPESM--AFDPLGRGPYTGVADGRI------LFWDGLKWTD 102
            DK     + I+  LN ++ P      FD L   P        I      L W  +  +D
Sbjct: 352 CDK---LTTIIESSLNVLE-PAEYRKMFDRLSVFPP----SAHIPTILLSLIWFDVIKSD 403

Query: 103 ---FAFTSNNRSEL-CNPKPIATS----YLK------NE---H---ICGRPLGLRFDKKT 142
                   +  S +   PK    S    YL+      NE   H   +    +   FD   
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 143 GDLYIADAYF----G--LMKVGPEGGLA------------------TSLATEAEGVPLRF 178
                 D YF    G  L  +     +                    S A  A G  L  
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523

Query: 179 TNDLDIDDEGNVYFTDSSTNYQRR--NFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQF 236
              L        Y  D+   Y+R     +  +   E+   ++      K T +L   L  
Sbjct: 524 LQQLKFYKP---YICDNDPKYERLVNAILDFLPKIEE--NLICS----KYTDLLRIALMA 574

Query: 237 PNG 239
            + 
Sbjct: 575 EDE 577

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 40/213 (18%)

Query: 66  NQIQGPESMAFDPLGRGPYTGVADG----RILFWDGLKWTDFAFTSN--NRSELCNPKPI 119
           N    P  +A +P     +  V+DG    RI+ +         F +     S   +P+P 
Sbjct: 140 NHFCQPTDVAVEPSTGAVF--VSDGYCNSRIVQFS----PSGKFVTQWGEESSGSSPRPG 193

Query: 120 ATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKV-GPEGG-LATSLATEAEGVP-- 175
             S          P  L        L +AD   G ++    +       +   + G    
Sbjct: 194 QFSV---------PHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF 244

Query: 176 -LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL 234
            + +         G  YF D             V +      +  + P  K         
Sbjct: 245 AISYIPGFLFAVNGKPYFGDQEPVQGF------VMNFSSGEIIDVFKPVRKH-------F 291

Query: 235 QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 267
             P+ +  S+D + ++  +     + K+ L  +
Sbjct: 292 DMPHDIVASEDGTVYI-GDAHTNTVWKFTLTEK 323

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 36/217 (16%), Positives = 71/217 (32%), Gaps = 45/217 (20%)

Query: 52  DDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRS 111
           D  + + + +      IQ P+ +A D +    Y               WTD   +     
Sbjct: 60  DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIY---------------WTD---SVLGTV 101

Query: 112 ELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD--AYFGLMKVGPEGGLATSLAT 169
            + + K +    L  E+   +P  +  D   G +Y  D      + K G  G    SL T
Sbjct: 102 SVADTKGVKRKTLFRENG-SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160

Query: 170 EAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228
           E    P    N + +D   G +Y+ DS  +                   +  +    + T
Sbjct: 161 ENIQWP----NGITLDLLSGRLYWVDSKLHSISS---------------IDVN-GGNRKT 200

Query: 229 VLLRNLQFPNGLSLSKDKSFFVFCE---GSVGRLHKY 262
           +L    +  +  SL+  +    + +    ++   ++ 
Sbjct: 201 ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 237

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 36/220 (16%), Positives = 66/220 (30%), Gaps = 61/220 (27%)

Query: 52  DDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPY--------TGVA--DG---RILFWDGL 98
           D  + + + +      IQ P+ +A D +    Y          VA   G   + LF +  
Sbjct: 142 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 201

Query: 99  K---------------WTDFAFTSNNRSELC-----NPKPIATSYLKNEHICGRPLGLRF 138
                           WTD+   +  + +       +   + T  +        P G+  
Sbjct: 202 SKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDIYSLVTENI------QWPNGITL 253

Query: 139 DKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSST 197
           D  +G LY  D+    +  +   GG   ++  + + +   F   L +  E  V++TD   
Sbjct: 254 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF--SLAV-FEDKVFWTDIIN 310

Query: 198 NYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFP 237
                                    T     +L  NL  P
Sbjct: 311 EAIFSANR----------------LTGSDVNLLAENLLSP 334

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 37/223 (16%), Positives = 71/223 (31%), Gaps = 61/223 (27%)

Query: 52  DDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPY--------TGVA--DG---RILFWDGL 98
           D  + + + +      IQ P+ +A D +    Y          VA   G   + LF +  
Sbjct: 436 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG 495

Query: 99  K---------------WTDFAFTSNNRSELC-----NPKPIATSYLKNEHICGRPLGLRF 138
                           WTD+   +  + +       +   + T  +        P G+  
Sbjct: 496 SKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDIYSLVTENI------QWPNGITL 547

Query: 139 DKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSST 197
           D  +G LY  D+    +  +   GG   ++  + + +   F+  L +  E  V++TD   
Sbjct: 548 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS--LAV-FEDKVFWTDIIN 604

Query: 198 NYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGL 240
                     +F         +   T     +L  NL  P  +
Sbjct: 605 EA--------IF------SANRL--TGSDVNLLAENLLSPEDM 631

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Length = 297

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 14/152 (9%)

Query: 153 GLMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA 211
               +  +   A  LAT + +    RF ND  +D  G  +    +   +    +      
Sbjct: 74  KFCALNWKEQSAVVLATVDNDKKNNRF-NDGKVDPAGRYFA--GTMAEETAPAVL----E 126

Query: 212 EDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE--KA 269
              G +    P           +   NGL  S D   F + +     +  +    +  + 
Sbjct: 127 RHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185

Query: 270 GNLEAFAILP---GYPDNVRTNEKGEFWVAIH 298
            N  +   L      PD +  + +G+ WVA +
Sbjct: 186 SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	391
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	100.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.97
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.94
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.93
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.92
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.91
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.89
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.87
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.87
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.86
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.85
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.85
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.83
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.83
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.83
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.82
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.81
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.81
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.81
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.78
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.75
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.73
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.72
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.72
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.71
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.71
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.71
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.7
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.7
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.7
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.69
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.67
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.67
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.67
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.66
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.66
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.63
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.63
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.63
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.62
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.61
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.59
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.59
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.57
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.57
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.53
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.53
3ott_A	758	Two-component system sensor histidine kinase; beta	99.53
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.52
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.51
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.5
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.49
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.49
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.48
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.47
3ott_A	758	Two-component system sensor histidine kinase; beta	99.46
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.46
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.42
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.42
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.41
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.39
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.39
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.39
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.38
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.37
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.35
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.32
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.28
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.26
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.26
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.26
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.25
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.23
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.21
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.2
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.19
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.18
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.17
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.17
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.16
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.15
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.15
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.13
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.1
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.09
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.06
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.04
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.03
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.01
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.01
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.0
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.99
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.94
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.94
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.94
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.93
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.93
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.92
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.91
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.91
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.89
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.89
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.88
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.88
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.88
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.88
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.86
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.86
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.85
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.85
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.82
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.77
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.77
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.75
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.74
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.74
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.73
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.73
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.71
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.71
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.7
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.69
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.69
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.68
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.67
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.66
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.65
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.65
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.65
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.63
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.63
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.62
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.62
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.62
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.61
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.61
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.61
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.6
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.59
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.59
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.59
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.58
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.58
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.56
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.56
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.56
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.55
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.55
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.55
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.54
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.54
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.53
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.53
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.52
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.5
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.5
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.49
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.49
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.49
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.48
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.48
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.48
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.48
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.48
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.47
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.47
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.47
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.46
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.44
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.41
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.41
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.4
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.39
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.39
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.39
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.38
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.38
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.37
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.36
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.36
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.35
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.35
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.34
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.31
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.3
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.3
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.29
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.29
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.29
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.28
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.28
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.26
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.26
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.26
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.25
2pm7_B	297	Protein transport protein SEC13, protein transport	98.25
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.24
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.23
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.21
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.21
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.2
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.19
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.19
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.19
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.16
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.14
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.13
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.13
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.12
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.12
3jro_A	753	Fusion protein of protein transport protein SEC13	98.09
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.08
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.07
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.07
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.06
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.06
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.04
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.03
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.03
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.01
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.0
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.0
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.99
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.98
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.95
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.94
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.9
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.89
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.88
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.87
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.84
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.82
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.82
3jro_A	753	Fusion protein of protein transport protein SEC13	97.81
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.8
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.78
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.77
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.76
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.76
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.76
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.63
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.59
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.58
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.56
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.53
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.51
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.5
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.48
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.45
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.44
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.39
2pm7_B	297	Protein transport protein SEC13, protein transport	97.39
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.37
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.35
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.31
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.23
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.22
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.21
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.14
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.1
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.09
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.07
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.99
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.98
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.95
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.92
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.87
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.85
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	96.85
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.78
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.77
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.76
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.66
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.53
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.49
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.48
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.35
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.33
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.33
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.2
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.17
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.11
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.9
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.84
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.84
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.76
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.57
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	94.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	94.6
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.05
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	93.76
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	93.71
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	93.23
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	92.64
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	91.82
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	91.25
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.65
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	90.63
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	90.32
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	89.47
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	89.1
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	88.4
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	85.17
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	85.05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	84.1
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	83.65
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	82.2
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	81.24

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=100.00  E-value=8.9e-35  Score=273.91  Aligned_cols=295  Identities=34%  Similarity=0.635  Sum_probs=230.6

Q ss_pred             ccccccCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCc-ccCCCCCCccccccccCccCccceEEEec
Q 016318           64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRS-ELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (391)
Q Consensus        64 ~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~P~gi~~d~  140 (391)
                      ..+++.+||++++|++|+++|+++.+++|++++.+  .++.+........ ..|++...    ......+++|.||++++
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~p~gi~~~~   89 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD----AEKRPLCGRTYDISYNL   89 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCC----GGGHHHHCCEEEEEEET
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccc----hhccccCCCCceEEEcC
Confidence            35678899999999999989999999999999876  4555543211100 01211000    01122357899999995


Q ss_pred             CCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          141 KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       141 ~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      ++++|||+|...+|+++|+++++++.+.....+.++..|+++++++ +|++|++++...+..+++...+++....|+|++
T Consensus        90 ~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           90 QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             CCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            4689999999888999999988777776555555677899999999 999999997765555555555566677899999


Q ss_pred             EeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcC
Q 016318          220 YDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      +|+++++.+.+...+..||||++++|++.+||+++.+++|++|++++...++.+.+.+++| |++|++|++|++||+...
T Consensus       170 ~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          170 YDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             EETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             EeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence            9999999888877888999999999999999999988999999998766666777777778 999999999999999876


Q ss_pred             CCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEECCEEEEec
Q 016318          300 RRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGS  379 (391)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs  379 (391)
                      .+...                 |.+           ...+.+.++|++|+.+..+..++|..+..++.+...+|+||+++
T Consensus       249 ~~~~~-----------------~~~-----------~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~  300 (322)
T 2fp8_A          249 ELDGN-----------------MHG-----------RVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT  300 (322)
T ss_dssp             ETTSS-----------------TTS-----------CEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEEC
T ss_pred             ccccc-----------------ccC-----------CCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEee
Confidence            33211                 000           12367899999999999999888876667888888899999999


Q ss_pred             CCCCeEEEEeCC
Q 016318          380 VLMPFVAVYDLS  391 (391)
Q Consensus       380 ~~~~~i~~~~~~  391 (391)
                      ..+++|.+++++
T Consensus       301 ~~~~~i~~~~~~  312 (322)
T 2fp8_A          301 LFHGSVGILVYD  312 (322)
T ss_dssp             SSCSEEEEEEC-
T ss_pred             cCCCceEEEecc
Confidence            999999999874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.97  E-value=8.2e-29  Score=234.21  Aligned_cols=277  Identities=18%  Similarity=0.226  Sum_probs=199.2

Q ss_pred             cccccCcceEEEccCCCeeEEEe-------------cCCEEEEEeCC----ceeEEEeecCCCcccCCCCCCcccccccc
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGV-------------ADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNE  127 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~-------------~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (391)
                      ++...|||+|+++++|. +|+++             .+|+|++++.+    +.+.+.....                ...
T Consensus        46 ~~~~~G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~----------------~~~  108 (355)
T 3sre_A           46 KGIDNGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN----------------TLD  108 (355)
T ss_dssp             TTCCSCCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS----------------SCC
T ss_pred             CCCCCCcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC----------------CCC
Confidence            34347999999999886 78886             68999999976    2333322110                011


Q ss_pred             CccCccceEEEecC-CC--cEEEEECCCC-----eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcc
Q 016318          128 HICGRPLGLRFDKK-TG--DLYIADAYFG-----LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNY  199 (391)
Q Consensus       128 ~~~g~P~gi~~d~~-~g--~L~V~d~~~g-----l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~  199 (391)
                      ....+|+||.+..+ ++  +|||+++..+     |++++++++..+ +....++.+++.||+++++++|.+|+++... +
T Consensus       109 ~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~-~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~-f  186 (355)
T 3sre_A          109 ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLL-HLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-F  186 (355)
T ss_dssp             GGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEE-EEEEECCTTCSSEEEEEEEETTEEEEEESCS-C
T ss_pred             cCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEE-EEeccccCCCCCCceEEEeCCCCEEecCCcE-e
Confidence            12479999998652 34  5999998753     899999876544 4455667789999999999999999998531 1


Q ss_pred             cchh-heeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc-cCccceeecc
Q 016318          200 QRRN-FMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE-KAGNLEAFAI  277 (391)
Q Consensus       200 ~~~~-~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~-~~g~~~~~~~  277 (391)
                      .... ...+.+++.+.|+|++||+.  +++++.+++.+||||+++||++++||+|+..++|++|+++++ +.+..++| .
T Consensus       187 td~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~  263 (355)
T 3sre_A          187 IDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-S  263 (355)
T ss_dssp             SSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E
T ss_pred             CCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-e
Confidence            1100 01122345678999999984  677888899999999999999999999999999999998743 23444566 6


Q ss_pred             cCCCCCceEeCC-CCCEEEEEcCC-CchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEEC----CCCCEE
Q 016318          278 LPGYPDNVRTNE-KGEFWVAIHCR-RSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYS----PEGKIL  351 (391)
Q Consensus       278 ~~g~p~~i~~d~-~G~lwva~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d----~~g~~~  351 (391)
                      +++.||||++|+ +|++|+|.... ..+..    -.|..                     .....+.++.    .++++.
T Consensus       264 ~~g~PDGi~vD~e~G~lwva~~~~g~~v~~----~~P~~---------------------~~~s~v~rI~~~~~~~~~v~  318 (355)
T 3sre_A          264 FDTLVDNISVDPVTGDLWVGCHPNGMRIFF----YDAEN---------------------PPGSEVLRIQDILSEEPKVT  318 (355)
T ss_dssp             CSSEEEEEEECTTTCCEEEEEESCHHHHHS----CCTTS---------------------CCCEEEEEEECTTSSSCEEE
T ss_pred             CCCCCceEEEeCCCCcEEEEecCCceEEEE----ECCCC---------------------CCCCEEEEEEccCCCCcEEE
Confidence            789999999999 59999976533 22211    12210                     0012344443    467788


Q ss_pred             EEEeCCCCCeeeceeEEEEECCEEEEecCCCCeEEEEeC
Q 016318          352 QVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  390 (391)
Q Consensus       352 ~~~~~~~g~~~~~is~~~~~~g~Lylgs~~~~~i~~~~~  390 (391)
                      ..|.+ +|+.+...|.+.+.+|+||+||+..+ +-.|+|
T Consensus       319 ~v~~d-dG~~l~~~T~a~~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          319 VVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             EEEEE-CSSSCCSEEEEEEETTEEEEEESSSC-EEEEEC
T ss_pred             EEEEc-CCCEEEeeEEEEEECCEEEEEEcCCC-ceeccC
Confidence            88887 89999999999999999999999998 555654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.6e-24  Score=200.66  Aligned_cols=259  Identities=17%  Similarity=0.199  Sum_probs=189.9

Q ss_pred             ccceeccccccCcceEEEccCCC-eeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceE
Q 016318           59 NSEIKFLNQIQGPESMAFDPLGR-GPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL  136 (391)
Q Consensus        59 ~~~~~~~~~~~gPe~i~~d~~G~-~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi  136 (391)
                      +.+.+..+ +..+|+.+++++|+ ++|++..+++|++++.+ ....+..                       ..+.|.++
T Consensus        36 ~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~-----------------------~~~~~~gl   91 (305)
T 3dr2_A           36 RLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLD-----------------------ATAFTNGN   91 (305)
T ss_dssp             CCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEE-----------------------SCSCEEEE
T ss_pred             ceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeC-----------------------CCCcccee
Confidence            34555444 67899999999998 78899999999999876 4443322                       13568999


Q ss_pred             EEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318          137 RFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       137 ~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      ++++ +|+||+++.. .+|.+++++ ++++.+.....+.++..|++++++++|++|++|+.................+.+
T Consensus        92 ~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~  169 (305)
T 3dr2_A           92 AVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH  169 (305)
T ss_dssp             EECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred             eECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCC
Confidence            9998 7899999977 569999997 667776655556667789999999999999998531100000000001112357


Q ss_pred             eEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC-----CeEEEEEeccccCccceeecc-cCCCCCceEeCC
Q 016318          216 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV-----GRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNE  289 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~-----~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~  289 (391)
                      +|+++|+++++++.+. .+..|||++++||++.||++++..     ++|+++++++......+.+.. .++.|++|++|+
T Consensus       170 ~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~  248 (305)
T 3dr2_A          170 SVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR  248 (305)
T ss_dssp             EEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT
T ss_pred             eEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC
Confidence            8999999888887777 778999999999999999999863     799999987643333445544 357899999999


Q ss_pred             CCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEE
Q 016318          290 KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVE  369 (391)
Q Consensus       290 ~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~  369 (391)
                      +|++|++...                                        .|.+++++|+.+..+..+.+     ++.+.
T Consensus       249 ~G~lwv~~~~----------------------------------------gv~~~~~~g~~~~~~~~~~~-----~~~~~  283 (305)
T 3dr2_A          249 GGWLWSSSGT----------------------------------------GVCVFDSDGQLLGHIPTPGT-----ASNCT  283 (305)
T ss_dssp             TSCEEECCSS----------------------------------------EEEEECTTSCEEEEEECSSC-----CCEEE
T ss_pred             CCCEEEecCC----------------------------------------cEEEECCCCCEEEEEECCCc-----eeEEE
Confidence            9999998622                                        27779999998888876542     33333


Q ss_pred             E--ECCEEEEecCCCCeEEEEeCC
Q 016318          370 E--KDGKLWMGSVLMPFVAVYDLS  391 (391)
Q Consensus       370 ~--~~g~Lylgs~~~~~i~~~~~~  391 (391)
                      .  +++.||+++.  ..+.+++++
T Consensus       284 f~~d~~~L~it~~--~~l~~~~~~  305 (305)
T 3dr2_A          284 FDQAQQRLFITGG--PCLWMLPLP  305 (305)
T ss_dssp             ECTTSCEEEEEET--TEEEEEECC
T ss_pred             EeCCCCEEEEEcC--CeEEEEECC
Confidence            3  3468999986  467777653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.93  E-value=4.2e-23  Score=191.15  Aligned_cols=251  Identities=18%  Similarity=0.224  Sum_probs=183.6

Q ss_pred             cccCcceEEEccCCC-eeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           67 QIQGPESMAFDPLGR-GPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~-~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ....||+++++++|+ ++|+++.+++|++++++ ....+..                       ..+.|.++++++ +|+
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~-dg~   81 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMH-----------------------PSHHQNGHCLNK-QGH   81 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEES-----------------------SCSSEEEEEECT-TCC
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEEC-----------------------CCCCcceeeECC-CCc
Confidence            467899999999998 88999999999999987 4222211                       146689999998 899


Q ss_pred             EEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 LYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      |||++.. .+|+++|+++++++.+.....+.+...+++++++++|++|++++...................++|+++++.
T Consensus        82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~  161 (296)
T 3e5z_A           82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD  161 (296)
T ss_dssp             EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred             EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence            9999976 569999998888777654444455678999999999999999853100000000000011235689999998


Q ss_pred             CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc-cC-ccceeecccCCCCCceEeCCCCCEEEEEcCCC
Q 016318          224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE-KA-GNLEAFAILPGYPDNVRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~-~~-g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~  301 (391)
                       ++...+...+..|++++++||++.+ ++++..++|+++++++. +. ...+.+....+.|++|++|++|++|++. .  
T Consensus       162 -g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~--  236 (296)
T 3e5z_A          162 -GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-G--  236 (296)
T ss_dssp             -SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-T--
T ss_pred             -CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-C--
Confidence             7777777888899999999999977 99998899999998632 11 2234442235689999999999999998 3  


Q ss_pred             chhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEE--EC-CEEEEe
Q 016318          302 SLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEE--KD-GKLWMG  378 (391)
Q Consensus       302 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~--~~-g~Lylg  378 (391)
                                                           +.+.+++++|+.+..+..+.+     ++.+..  .+ +.||++
T Consensus       237 -------------------------------------~~v~~~~~~g~~~~~~~~~~~-----~~~~~f~~~d~~~L~v~  274 (296)
T 3e5z_A          237 -------------------------------------DGVHVLTPDGDELGRVLTPQT-----TSNLCFGGPEGRTLYMT  274 (296)
T ss_dssp             -------------------------------------TEEEEECTTSCEEEEEECSSC-----CCEEEEESTTSCEEEEE
T ss_pred             -------------------------------------CeEEEECCCCCEEEEEECCCC-----ceeEEEECCCCCEEEEE
Confidence                                                 237778999998888876554     333433  23 589999


Q ss_pred             cCCCCeEEEEeC
Q 016318          379 SVLMPFVAVYDL  390 (391)
Q Consensus       379 s~~~~~i~~~~~  390 (391)
                      +.  ..+.++++
T Consensus       275 t~--~~l~~~~~  284 (296)
T 3e5z_A          275 VS--TEFWSIET  284 (296)
T ss_dssp             ET--TEEEEEEC
T ss_pred             cC--CeEEEEEc
Confidence            85  46777764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.92  E-value=1.4e-22  Score=188.33  Aligned_cols=208  Identities=14%  Similarity=0.181  Sum_probs=155.4

Q ss_pred             cceeccccccCcceEEEccC-CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceE
Q 016318           60 SEIKFLNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL  136 (391)
Q Consensus        60 ~~~~~~~~~~gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi  136 (391)
                      ++.+.......+|+.+++++ +.++|++..+++|++++++  ....+.                        ....|.++
T Consensus         4 ~~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~------------------------~~~~~~~i   59 (297)
T 3g4e_A            4 IECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT------------------------MDAPVSSV   59 (297)
T ss_dssp             EEEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE------------------------CSSCEEEE
T ss_pred             EEEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe------------------------CCCceEEE
Confidence            34444556778999999984 6678888889999999987  222221                        12568899


Q ss_pred             EEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCce
Q 016318          137 RFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       137 ~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      ++++ +|+|||+. ..+|+++|+++++++.+.....+.+...++++++|++|++|+++......      ........++
T Consensus        60 ~~~~-dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~------~~~~~~~~~~  131 (297)
T 3g4e_A           60 ALRQ-SGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA------PAVLERHQGA  131 (297)
T ss_dssp             EEBT-TSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB------TTBCCTTCEE
T ss_pred             EECC-CCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc------cccccCCCcE
Confidence            9998 78899997 56899999999988877655444456789999999999999998431100      0001134578


Q ss_pred             EEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc--ccCccceeeccc---CCCCCceEeCCCC
Q 016318          217 VLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG--EKAGNLEAFAIL---PGYPDNVRTNEKG  291 (391)
Q Consensus       217 l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g--~~~g~~~~~~~~---~g~p~~i~~d~~G  291 (391)
                      |++++++ ++...+...+..|||++++||++.+|++++..++|++++++.  ......+.+.++   ++.|++|++|++|
T Consensus       132 l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G  210 (297)
T 3g4e_A          132 LYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG  210 (297)
T ss_dssp             EEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS
T ss_pred             EEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC
Confidence            9999986 566666677789999999999999999999999999998742  122223445443   4689999999999


Q ss_pred             CEEEEEcCC
Q 016318          292 EFWVAIHCR  300 (391)
Q Consensus       292 ~lwva~~~~  300 (391)
                      ++|++....
T Consensus       211 ~lwva~~~~  219 (297)
T 3g4e_A          211 KLWVACYNG  219 (297)
T ss_dssp             CEEEEEETT
T ss_pred             CEEEEEcCC
Confidence            999998764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.91  E-value=4.6e-22  Score=184.90  Aligned_cols=261  Identities=22%  Similarity=0.307  Sum_probs=178.7

Q ss_pred             cccccCcceEEEccCCCeeEE-------EecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccce
Q 016318           65 LNQIQGPESMAFDPLGRGPYT-------GVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLG  135 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~-------~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~g  135 (391)
                      .+.+..||+++++++|+++++       ++.+++|.+++..  ++..+...                  ........|.+
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------------------~~~~~~~~~~~   75 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP------------------EVNGYGGIPAG   75 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC------------------EETTEECCEEE
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec------------------ccCCCCCCCce
Confidence            345789999999999984444       4778999999865  44433210                  00012467999


Q ss_pred             EEEecCC-CcEEEEECCCCeEEEeCCCCeeEEc-eeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCC
Q 016318          136 LRFDKKT-GDLYIADAYFGLMKVGPEGGLATSL-ATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       136 i~~d~~~-g~L~V~d~~~gl~~~d~~~g~~~~~-~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      +++++ + |+|||++...+|+++|++ ++++.+ .....+.+...+++++++++|++|+++........++  .......
T Consensus        76 i~~~~-~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~--~~~~~~~  151 (314)
T 1pjx_A           76 CQCDR-DANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY--TRSMQEK  151 (314)
T ss_dssp             EEECS-SSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC--CBTTSSS
T ss_pred             EEEec-CCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccc--cccccCC
Confidence            99998 6 899999987799999999 777665 4433334456799999999999999985421000000  0011223


Q ss_pred             CceEEEEeCCCCeEEEeccCCCCcceEEEc----cCCCEEEEEeCCCCeEEEEEeccc-cCccceeecccC----CCCCc
Q 016318          214 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLS----KDKSFFVFCEGSVGRLHKYWLIGE-KAGNLEAFAILP----GYPDN  284 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~~~~~~~ngia~~----~d~~~l~v~et~~~~I~~~~~~g~-~~g~~~~~~~~~----g~p~~  284 (391)
                      .++|++++++ ++...+......|++++++    +|++.+|++++.+++|++++.++. +....+.+..++    +.|++
T Consensus       152 ~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  230 (314)
T 1pjx_A          152 FGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             CEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             CCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence            4789999987 7776666667789999999    999889999988899999987621 112223444443    56899


Q ss_pred             eEeCCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCC-CCEEEEEeCCCCCeee
Q 016318          285 VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPE-GKILQVLEDSKGKVVK  363 (391)
Q Consensus       285 i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~g~~~~  363 (391)
                      |++|++|++|++....                                      +.+.++|++ |+.+..+..+.    .
T Consensus       231 i~~d~~G~l~v~~~~~--------------------------------------~~i~~~d~~~g~~~~~~~~~~----~  268 (314)
T 1pjx_A          231 MDFDEDNNLLVANWGS--------------------------------------SHIEVFGPDGGQPKMRIRCPF----E  268 (314)
T ss_dssp             EEEBTTCCEEEEEETT--------------------------------------TEEEEECTTCBSCSEEEECSS----S
T ss_pred             eEECCCCCEEEEEcCC--------------------------------------CEEEEEcCCCCcEeEEEeCCC----C
Confidence            9999999999997653                                      235667776 66555554332    1


Q ss_pred             ceeEEEE-ECCE-EEEecCCCCeEEEEeC
Q 016318          364 AISEVEE-KDGK-LWMGSVLMPFVAVYDL  390 (391)
Q Consensus       364 ~is~~~~-~~g~-Lylgs~~~~~i~~~~~  390 (391)
                      .++.+.. .+|+ ||+++..+..|.++++
T Consensus       269 ~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          269 KPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            2344444 2344 8888877778887765

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.89  E-value=1.6e-20  Score=175.23  Aligned_cols=187  Identities=20%  Similarity=0.170  Sum_probs=142.6

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ..||+++++++|++++++..+++|++++++ ....+..                       ..++|.||++++ +|+|||
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-----------------------~~~~p~gia~~~-dG~l~v   87 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-----------------------VEGKVSGLAFTS-NGDLVA   87 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-----------------------CSSEEEEEEECT-TSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-----------------------CCCCceeEEEcC-CCcEEE
Confidence            689999999999966666688999999887 3332211                       135799999998 788999


Q ss_pred             EECCC-C--eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          148 ADAYF-G--LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       148 ~d~~~-g--l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      ++... +  |+++++.+++++.+....   ...++++++..+++++|++++.                 +|+|+++|+.+
T Consensus        88 ad~~~~~~~v~~~d~~~g~~~~~~~~~---~~~~~~g~~~~~~~~~~v~d~~-----------------~g~i~~~d~~~  147 (306)
T 2p4o_A           88 TGWNADSIPVVSLVKSDGTVETLLTLP---DAIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQ  147 (306)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEECT---TCSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTT
T ss_pred             EeccCCcceEEEEcCCCCeEEEEEeCC---CccccCcccccCCCcEEEEECC-----------------CCeEEEEeCCC
Confidence            99753 4  999998888877665432   2356788888888889999854                 47999999987


Q ss_pred             CeEEEe-----------ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc-ccCccceeecccCCCCCceEeCCCCC
Q 016318          225 KQTTVL-----------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG-EKAGNLEAFAILPGYPDNVRTNEKGE  292 (391)
Q Consensus       225 ~~~~~~-----------~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g-~~~g~~~~~~~~~g~p~~i~~d~~G~  292 (391)
                      ++.++.           ...+..||||  ++|++++||+++.+++|++|++++ .+.+..+.+... ..|++|++|++|+
T Consensus       148 ~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~  224 (306)
T 2p4o_A          148 PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGN  224 (306)
T ss_dssp             TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCC
T ss_pred             CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCC
Confidence            643332           1345689998  889999999999999999999875 233444555543 4799999999999


Q ss_pred             EEEEEcCCCc
Q 016318          293 FWVAIHCRRS  302 (391)
Q Consensus       293 lwva~~~~~~  302 (391)
                      +||+......
T Consensus       225 l~va~~~~~~  234 (306)
T 2p4o_A          225 LYGATHIYNS  234 (306)
T ss_dssp             EEEECBTTCC
T ss_pred             EEEEeCCCCe
Confidence            9999876533

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.87  E-value=1.8e-19  Score=169.61  Aligned_cols=203  Identities=19%  Similarity=0.185  Sum_probs=151.1

Q ss_pred             ccceeccccccCcceEEEccC-CCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCcccCCCCCCccccccccCccCccce
Q 016318           59 NSEIKFLNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLG  135 (391)
Q Consensus        59 ~~~~~~~~~~~gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~g  135 (391)
                      +++.+.......+|+++++++ +.++|++..+++|++++.+ . ...+. .                       ...|.+
T Consensus        39 ~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~-----------------------~~~v~~   94 (326)
T 2ghs_A           39 AGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-L-----------------------PFMGSA   94 (326)
T ss_dssp             CCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-C-----------------------SSCEEE
T ss_pred             ceEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-C-----------------------CCcceE
Confidence            456666666778999999986 5677888889999999886 2 22221 0                       245788


Q ss_pred             EEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318          136 LRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       136 i~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      +++++ +|++||++ ..+|+++|+++++++.+.....+.+...++++++|++|++|+++....           +....+
T Consensus        95 i~~~~-dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~  161 (326)
T 2ghs_A           95 LAKIS-DSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAG  161 (326)
T ss_dssp             EEEEE-TTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCE
T ss_pred             EEEeC-CCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCCCce
Confidence            99998 79999997 567999999988877664432233345789999999999999874210           012357


Q ss_pred             eEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec--cc-cCccceeecc---cCCCCCceEeCC
Q 016318          216 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI--GE-KAGNLEAFAI---LPGYPDNVRTNE  289 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~--g~-~~g~~~~~~~---~~g~p~~i~~d~  289 (391)
                      +|++++  +++.+.+......++++++++|++.+|++++..++|++++++  +. .....+.+..   ..+.|+++++|+
T Consensus       162 ~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~  239 (326)
T 2ghs_A          162 SIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  239 (326)
T ss_dssp             EEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             EEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence            899999  577777666667899999999999999999888999999975  22 2222334433   246799999999


Q ss_pred             CCCEEEEEcCC
Q 016318          290 KGEFWVAIHCR  300 (391)
Q Consensus       290 ~G~lwva~~~~  300 (391)
                      +|++|++....
T Consensus       240 ~G~lwva~~~~  250 (326)
T 2ghs_A          240 EGHIWNARWGE  250 (326)
T ss_dssp             TSCEEEEEETT
T ss_pred             CCCEEEEEeCC
Confidence            99999998653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.87  E-value=2.5e-19  Score=164.64  Aligned_cols=244  Identities=16%  Similarity=0.282  Sum_probs=171.2

Q ss_pred             cccccCcceEEEccCCCeeEEEecCCEEEEEeCC-ce-eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      .+++..|.+++++++|++++++..+++|.+++.+ .. ..+....                 ........|.+++++..+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~-----------------~~~~~~~~p~~i~~~~~~   88 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG-----------------KRDSQLLYPNRVAVVRNS   88 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS-----------------SSTTCBSSEEEEEEETTT
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccC-----------------CCcccccCceEEEEEcCC
Confidence            4668899999999999955555778999999877 22 2221100                 001124579999995338


Q ss_pred             CcEEEEEC--CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          143 GDLYIADA--YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       143 g~L~V~d~--~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      ++|||++.  ...|.++|.++..++.+..    .....|++++++++|++|+++..                 +++|++|
T Consensus        89 g~l~v~~~~~~~~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~  147 (286)
T 1q7f_A           89 GDIIVTERSPTHQIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIF  147 (286)
T ss_dssp             TEEEEEECGGGCEEEEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEE
T ss_pred             CeEEEEcCCCCCEEEEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC-----------------CCEEEEE
Confidence            99999996  3569999976654444421    23457899999999999999854                 4789999


Q ss_pred             eCCCCeEEEec--cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc--CCCCCceEeCCCCCEEEE
Q 016318          221 DPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       221 d~~~~~~~~~~--~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~--~g~p~~i~~d~~G~lwva  296 (391)
                      |+++.....+.  ..+..|++|+++++|+ +|+++..+++|++++.+|.   ....+...  ...|.+|++|++|++|++
T Consensus       148 ~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~G~l~v~  223 (286)
T 1q7f_A          148 DQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIA  223 (286)
T ss_dssp             CTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEE
T ss_pred             cCCCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCCCCEEEE
Confidence            98766555553  3456899999999998 9999988899999987653   12223211  146899999999999999


Q ss_pred             EcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEE-ECCEE
Q 016318          297 IHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEE-KDGKL  375 (391)
Q Consensus       297 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~-~~g~L  375 (391)
                      .....                                     ..+..++++|+.+..+....+.  ..+..+.. .+|+|
T Consensus       224 ~~~~~-------------------------------------~~i~~~~~~g~~~~~~~~~~~~--~~~~~i~~~~~g~l  264 (286)
T 1q7f_A          224 DNHNN-------------------------------------FNLTIFTQDGQLISALESKVKH--AQCFDVALMDDGSV  264 (286)
T ss_dssp             ECSSS-------------------------------------CEEEEECTTSCEEEEEEESSCC--SCEEEEEEETTTEE
T ss_pred             eCCCC-------------------------------------EEEEEECCCCCEEEEEcccCCC--CcceeEEECCCCcE
Confidence            76531                                     1466788888887777543221  12334444 46899


Q ss_pred             EEecCCCCeEEEEeC
Q 016318          376 WMGSVLMPFVAVYDL  390 (391)
Q Consensus       376 ylgs~~~~~i~~~~~  390 (391)
                      |+++. ...|.++++
T Consensus       265 ~vs~~-~~~v~v~~~  278 (286)
T 1q7f_A          265 VLASK-DYRLYIYRY  278 (286)
T ss_dssp             EEEET-TTEEEEEEC
T ss_pred             EEECC-CCeEEEEEc
Confidence            99974 678887764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.86  E-value=1.1e-19  Score=170.61  Aligned_cols=199  Identities=20%  Similarity=0.284  Sum_probs=146.3

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      +....||+++++++|+++++++.+++|++++.+  .+..+...                      ....|.++++++ +|
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~----------------------~~~~~~~i~~~~-dg   98 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS----------------------HKANPAAIKIHK-DG   98 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------------------SSSSEEEEEECT-TS
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC----------------------CCCCcceEEECC-CC
Confidence            345689999999999955678888999999876  33332211                      135689999998 78


Q ss_pred             cEEEEECCC-----CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEE
Q 016318          144 DLYIADAYF-----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVL  218 (391)
Q Consensus       144 ~L~V~d~~~-----gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~  218 (391)
                      +|||++...     +|+++|++++..+.+....  .....+++++++++|++|+++....           .....++|+
T Consensus        99 ~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~  165 (333)
T 2dg1_A           99 RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVY  165 (333)
T ss_dssp             CEEEEECTTSSSCCEEEEECTTSCSCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEE
T ss_pred             cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--ccCCcccceEECCCCCEEEEecccc-----------ccCCCceEE
Confidence            999998765     6999999988776443211  1235789999999999999985310           112357899


Q ss_pred             EEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc--ccCccc--eeecccC--CCCCceEeCCCCC
Q 016318          219 KYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG--EKAGNL--EAFAILP--GYPDNVRTNEKGE  292 (391)
Q Consensus       219 ~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g--~~~g~~--~~~~~~~--g~p~~i~~d~~G~  292 (391)
                      ++|+++++.+.+......++++++++|++.+|++++..++|++++++.  ......  +.+...+  ..|++|++|++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  245 (333)
T 2dg1_A          166 YVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN  245 (333)
T ss_dssp             EECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC
T ss_pred             EEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC
Confidence            999988887776666678999999999999999988788999999853  111110  1222233  3789999999999


Q ss_pred             EEEEEcCC
Q 016318          293 FWVAIHCR  300 (391)
Q Consensus       293 lwva~~~~  300 (391)
                      +|++....
T Consensus       246 l~v~~~~~  253 (333)
T 2dg1_A          246 LYVAMYGQ  253 (333)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEcCC
Confidence            99998653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.85  E-value=3.3e-19  Score=174.33  Aligned_cols=242  Identities=13%  Similarity=0.106  Sum_probs=169.2

Q ss_pred             ccccCcceEEEccC---CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEec
Q 016318           66 NQIQGPESMAFDPL---GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (391)
Q Consensus        66 ~~~~gPe~i~~d~~---G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~  140 (391)
                      +++..|++|++|++   |+ ||++...++|.++++.  .+..+..                       ...+|.++++++
T Consensus       136 ~~~~~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~~-----------------------~~~~P~giavd~  191 (433)
T 4hw6_A          136 GAFDNIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKTT-----------------------NIGQCADVNFTL  191 (433)
T ss_dssp             CCCSCCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEECC-----------------------CCSCEEEEEECT
T ss_pred             cccCCCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEeec-----------------------CCCCccEEEECC
Confidence            36889999999984   76 6666555899999985  3333311                       246799999999


Q ss_pred             CCCcEEEEECC-----CCeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCC
Q 016318          141 KTGDLYIADAY-----FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       141 ~~g~L~V~d~~-----~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                       +|+|||+|..     .+++.++..++.....  ..  ..+..|+++++++ +|+||+++..                 +
T Consensus       192 -dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~--~~--~~~~~P~giavd~~~G~lyv~d~~-----------------~  249 (433)
T 4hw6_A          192 -NGDMVVVDDQSSDTNTGIYLFTRASGFTERL--SL--CNARGAKTCAVHPQNGKIYYTRYH-----------------H  249 (433)
T ss_dssp             -TCCEEEEECCSCTTSEEEEEECGGGTTCCEE--EE--EECSSBCCCEECTTTCCEEECBTT-----------------C
T ss_pred             -CCCEEEEcCCCCcccceEEEEECCCCeeccc--cc--cccCCCCEEEEeCCCCeEEEEECC-----------------C
Confidence             6779999974     3577777654432110  00  1356899999999 8999999964                 5


Q ss_pred             ceEEEEeCCCCeE-EEecc--CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecccc--Cccceeeccc---C-------
Q 016318          215 GRVLKYDPTTKQT-TVLLR--NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK--AGNLEAFAIL---P-------  279 (391)
Q Consensus       215 g~l~~~d~~~~~~-~~~~~--~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~--~g~~~~~~~~---~-------  279 (391)
                      ++|+++|+++++. +.+..  ....+++|+++|++++|||+++.+++|++++.++..  ......++..   .       
T Consensus       250 ~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~  329 (433)
T 4hw6_A          250 AMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMG  329 (433)
T ss_dssp             SEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEG
T ss_pred             CEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcc
Confidence            7999999987876 44322  233566899999999999999999999999876421  1111222211   1       


Q ss_pred             -----CCCCceEe---------CCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEEC
Q 016318          280 -----GYPDNVRT---------NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYS  345 (391)
Q Consensus       280 -----g~p~~i~~---------d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d  345 (391)
                           ..|.+|++         |.+|++||+....+                                      .|.+++
T Consensus       330 ~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~--------------------------------------~I~~~~  371 (433)
T 4hw6_A          330 TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH--------------------------------------TVRVLT  371 (433)
T ss_dssp             GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT--------------------------------------EEEEEC
T ss_pred             cceEEcCCccEEEEccccccccCCCCcEEEEECCCC--------------------------------------EEEEEC
Confidence                 24778999         99999999987653                                      355567


Q ss_pred             CCCCEEEEEeCC--------CC-----CeeeceeEEEEE--CCEEEEecCCCCeEEEEeCC
Q 016318          346 PEGKILQVLEDS--------KG-----KVVKAISEVEEK--DGKLWMGSVLMPFVAVYDLS  391 (391)
Q Consensus       346 ~~g~~~~~~~~~--------~g-----~~~~~is~~~~~--~g~Lylgs~~~~~i~~~~~~  391 (391)
                      ++|.+.......        +|     ..+.....+..+  +|+||++...+++|.++.++
T Consensus       372 ~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          372 PEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            777544443221        11     124445667666  69999999999999999764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.85  E-value=2.8e-19  Score=162.51  Aligned_cols=234  Identities=21%  Similarity=0.246  Sum_probs=164.0

Q ss_pred             CcceEEEccCCCeeEE-E-ecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           70 GPESMAFDPLGRGPYT-G-VADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~-~-~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      .|++|+++++|+ +|+ + ..+++|.+++........ .                   .......|.+|++++ +|+|||
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-~-------------------~~~~~~~p~~i~~~~-~g~l~v   82 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-L-------------------PFNGLYQPQGLAVDG-AGTVYV   82 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-C-------------------CCCSCCSCCCEEECT-TCCEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-E-------------------eeCCcCCcceeEECC-CCCEEE
Confidence            999999999999 666 5 677899999876211110 0                   001135799999998 788999


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ++...+|+++|++++....+..    .....|++++++++|++|+++..                 +++|++++..+...
T Consensus        83 ~~~~~~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~  141 (270)
T 1rwi_B           83 TDFNNRVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQ  141 (270)
T ss_dssp             EETTTEEEEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCCSC
T ss_pred             EcCCCEEEEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC-----------------CCEEEEEECCCcee
Confidence            9985569999998876554321    12357899999999999999854                 46899998766544


Q ss_pred             EEe-ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCceEeCCCCCEEEEEcCCCchhh
Q 016318          228 TVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHCRRSLYS  305 (391)
Q Consensus       228 ~~~-~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~~d~~G~lwva~~~~~~~~~  305 (391)
                      ... ...+..|++++++++++ +|+++..+++|.+++.++..   ..... .....|.+|++|++|++|++.....    
T Consensus       142 ~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~----  213 (270)
T 1rwi_B          142 TVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTN----  213 (270)
T ss_dssp             EECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTTS----
T ss_pred             EeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCc---eEeecccCCCCceEEEECCCCCEEEEECCCC----
Confidence            333 24456899999999998 99998888899999866532   11111 1114688999999999999986542    


Q ss_pred             hhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEE-CCEEEEecCCCCe
Q 016318          306 HLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEK-DGKLWMGSVLMPF  384 (391)
Q Consensus       306 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~-~g~Lylgs~~~~~  384 (391)
                                                        .+.+++++++....... .+  ...+..+..+ +|+||+++..+..
T Consensus       214 ----------------------------------~v~~~~~~~~~~~~~~~-~~--~~~p~~i~~~~~g~l~v~~~~~~~  256 (270)
T 1rwi_B          214 ----------------------------------QVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDR  256 (270)
T ss_dssp             ----------------------------------CEEEECTTCSCCEECCC-CS--CSCEEEEEECTTCCEEEEEGGGTE
T ss_pred             ----------------------------------cEEEEcCCCCcceeecc-CC--CCCceeEEECCCCCEEEEECCCCE
Confidence                                              25567777664433211 22  1234556554 4889999999999


Q ss_pred             EEEEeCC
Q 016318          385 VAVYDLS  391 (391)
Q Consensus       385 i~~~~~~  391 (391)
                      |.+++++
T Consensus       257 v~~~~~~  263 (270)
T 1rwi_B          257 VVKLTSL  263 (270)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9998764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.83  E-value=2.9e-18  Score=166.51  Aligned_cols=241  Identities=16%  Similarity=0.113  Sum_probs=166.4

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      .++..|.+|++|++|++++++..+++|.+++.+  ....+...                       ...|. ++++++++
T Consensus       128 a~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-----------------------~~~~~-ia~~~~g~  183 (409)
T 3hrp_A          128 AKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-----------------------FKGGK-PAVTKDKQ  183 (409)
T ss_dssp             CCCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-----------------------CCBCB-CEECTTSS
T ss_pred             cccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-----------------------CCCCc-eeEecCCC
Confidence            357899999999999966666777999999987  33333211                       23466 88998555


Q ss_pred             cEEEEECCC--CeEEEeCCCCee-EEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          144 DLYIADAYF--GLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       144 ~L~V~d~~~--gl~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      .||+++...  .|+++++.++.. +.+. .........|+++++++ +|+||+++.                  +++|++
T Consensus       184 ~l~~~d~~~~~~I~~~d~~~~~~~~~~g-~~~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~  244 (409)
T 3hrp_A          184 RVYSIGWEGTHTVYVYMKASGWAPTRIG-QLGSTFSGKIGAVALDETEEWLYFVDS------------------NKNFGR  244 (409)
T ss_dssp             EEEEEBSSTTCEEEEEEGGGTTCEEEEE-ECCTTSCSCCCBCEECTTSSEEEEECT------------------TCEEEE
T ss_pred             cEEEEecCCCceEEEEEcCCCceeEEee-eccchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEEE
Confidence            689998754  599999887643 2221 11111346799999999 789999763                  378999


Q ss_pred             EeCCCCeEEEe----ccCCC--Ccc-eEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc--------------
Q 016318          220 YDPTTKQTTVL----LRNLQ--FPN-GLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--------------  278 (391)
Q Consensus       220 ~d~~~~~~~~~----~~~~~--~~n-gia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~--------------  278 (391)
                      ||++++....+    ..+..  .|. +++++|++..||+++..+++|++++.+|.    ...+...              
T Consensus       245 ~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~  320 (409)
T 3hrp_A          245 FNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEA  320 (409)
T ss_dssp             EETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGC
T ss_pred             EECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCccccc
Confidence            99998876665    22222  244 99999976679999999999999987653    2222211              


Q ss_pred             -CCCCCceEeCCCCCEEEEEc-CCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEEC-CCCCEEEEEe
Q 016318          279 -PGYPDNVRTNEKGEFWVAIH-CRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYS-PEGKILQVLE  355 (391)
Q Consensus       279 -~g~p~~i~~d~~G~lwva~~-~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d-~~g~~~~~~~  355 (391)
                       -..|.+|++|++|++|++.. ..++                                      |.+++ ++|.+.....
T Consensus       321 ~~~~P~gia~d~dG~lyvad~~~~~~--------------------------------------I~~~~~~~G~v~~~~g  362 (409)
T 3hrp_A          321 LFAQPNGMTVDEDGNFYIVDGFKGYC--------------------------------------LRKLDILDGYVSTVAG  362 (409)
T ss_dssp             BCSSEEEEEECTTCCEEEEETTTTCE--------------------------------------EEEEETTTTEEEEEEE
T ss_pred             EeCCCeEEEEeCCCCEEEEeCCCCCE--------------------------------------EEEEECCCCEEEEEeC
Confidence             13589999999999999987 5432                                      44455 4454332222


Q ss_pred             C------CCC----CeeeceeEEEEEC-CEEEEecCCCCeEEEEeCC
Q 016318          356 D------SKG----KVVKAISEVEEKD-GKLWMGSVLMPFVAVYDLS  391 (391)
Q Consensus       356 ~------~~g----~~~~~is~~~~~~-g~Lylgs~~~~~i~~~~~~  391 (391)
                      .      .+|    ..+.....+..+. |+||++...+..|.++.++
T Consensus       363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            1      011    1134456666554 9999999999999999874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.83  E-value=1.2e-17  Score=153.42  Aligned_cols=185  Identities=16%  Similarity=0.227  Sum_probs=136.8

Q ss_pred             ccccCcceEEEccCCCeeEEEe-cCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           66 NQIQGPESMAFDPLGRGPYTGV-ADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~-~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      .....|++|++|++|+ +|++. .+++|.+++.+ .+..+..                     ......|.++++++ +|
T Consensus        17 ~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~~~~~---------------------~~~~~~~~~i~~~~-~g   73 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGK-VWFTQHKANKISSLDQSGRIKEFEV---------------------PTPDAKVMCLIVSS-LG   73 (300)
T ss_dssp             STTCCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEEC---------------------SSTTCCEEEEEECT-TS
T ss_pred             CCCCCcceeeECCCCC-EEEEcCCCCeEEEECCCCceEEEEC---------------------CCCCCcceeEEECC-CC
Confidence            3467999999999999 66655 57899999887 4333221                     01136799999998 78


Q ss_pred             cEEEEECCC-CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          144 DLYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       144 ~L~V~d~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      ++||++... +|+++|++ ++.+.+....   ....|++++++++|++|+++..                 .++|+++|+
T Consensus        74 ~l~v~~~~~~~v~~~d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~  132 (300)
T 2qc5_A           74 DIWFTENGANKIGKLSKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN-----------------GDRIGKLTA  132 (300)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT-----------------TTEEEEECT
T ss_pred             CEEEEecCCCeEEEECCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC-----------------CCeEEEECC
Confidence            999999864 49999998 6555443221   1256899999999999999854                 468999999


Q ss_pred             CCCeEEEec--cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCCCCCceEeCCCCCEEEEEc
Q 016318          223 TTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       223 ~~~~~~~~~--~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g~p~~i~~d~~G~lwva~~  298 (391)
                      + ++...+.  .....|++++++++++ +|+++..+++|++++.++    +...+..  ....|.+|++|++|++|++..
T Consensus       133 ~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  206 (300)
T 2qc5_A          133 D-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITNTG----KLEEYPLPTNAAAPVGITSGNDGALWFVEI  206 (300)
T ss_dssp             T-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred             C-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECCCC----cEEEeeCCCCCCCcceEEECCCCCEEEEcc
Confidence            8 6655432  2456899999999999 999988888999998643    2222321  113588999999999999986


Q ss_pred             CC
Q 016318          299 CR  300 (391)
Q Consensus       299 ~~  300 (391)
                      ..
T Consensus       207 ~~  208 (300)
T 2qc5_A          207 MG  208 (300)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=3e-18  Score=167.41  Aligned_cols=241  Identities=13%  Similarity=0.124  Sum_probs=169.9

Q ss_pred             cccccCcceEEEcc--CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEec
Q 016318           65 LNQIQGPESMAFDP--LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (391)
Q Consensus        65 ~~~~~gPe~i~~d~--~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~  140 (391)
                      .+++..|++|++|+  +|+ +|+....++|.+++.+  .+..+..                       ...+|.+|++++
T Consensus       133 ~~~~~~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~-----------------------~~~~P~~ia~d~  188 (430)
T 3tc9_A          133 CGGFGGAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYS-----------------------GLSKVRTICWTH  188 (430)
T ss_dssp             CBCCSCCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEEC-----------------------CCSCEEEEEECT
T ss_pred             ccCCCCCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEec-----------------------CCCCcceEEEeC
Confidence            34688999999996  466 7776666899999887  3333321                       256799999998


Q ss_pred             CCCc-EEEEECCC-----CeEEEeCCCCee--EEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeeccc
Q 016318          141 KTGD-LYIADAYF-----GLMKVGPEGGLA--TSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       141 ~~g~-L~V~d~~~-----gl~~~d~~~g~~--~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                       +++ |||++...     .++.++.+++..  +.+.      .+..|+++++++ +|+||+++..               
T Consensus       189 -~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~---------------  246 (430)
T 3tc9_A          189 -EADSMIITNDQNNNDRPNNYILTRESGFKVITELT------KGQNCNGAETHPINGELYFNSWN---------------  246 (430)
T ss_dssp             -TSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETT---------------
T ss_pred             -CCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec------cCCCceEEEEeCCCCEEEEEECC---------------
Confidence             565 99999743     367777765432  1221      256799999999 8999999965               


Q ss_pred             CCCceEEEEeCCCCeEEEec--cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecccc--Cccceeeccc---C-----
Q 016318          212 EDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK--AGNLEAFAIL---P-----  279 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~--~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~--~g~~~~~~~~---~-----  279 (391)
                        +++|++|++++++...+.  .....|++|+++|++++|||++..+++|++++.++..  ......+...   .     
T Consensus       247 --~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg  324 (430)
T 3tc9_A          247 --AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDG  324 (430)
T ss_dssp             --TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCE
T ss_pred             --CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCC
Confidence              579999999988764332  2345799999999999999999999999999887631  1111222211   0     


Q ss_pred             -------CCCC-ceEe--------CCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEE
Q 016318          280 -------GYPD-NVRT--------NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVK  343 (391)
Q Consensus       280 -------g~p~-~i~~--------d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~  343 (391)
                             ..|. ++++        |++|++|++....+                                      .|.+
T Consensus       325 ~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~--------------------------------------~I~~  366 (430)
T 3tc9_A          325 VGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH--------------------------------------CIRI  366 (430)
T ss_dssp             EGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT--------------------------------------EEEE
T ss_pred             CCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc--------------------------------------EEEE
Confidence                   2366 6777        56799999987642                                      3566


Q ss_pred             ECCCCCEEEEEeCC--------CC-----CeeeceeEEEEE--CCEEEEecCCCCeEEEEeCC
Q 016318          344 YSPEGKILQVLEDS--------KG-----KVVKAISEVEEK--DGKLWMGSVLMPFVAVYDLS  391 (391)
Q Consensus       344 ~d~~g~~~~~~~~~--------~g-----~~~~~is~~~~~--~g~Lylgs~~~~~i~~~~~~  391 (391)
                      ++++|++.......        +|     ..+.....+..+  +|+||++...++.|.++.++
T Consensus       367 i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          367 LTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             ECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            77788655554331        22     123455666665  59999999999999998764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=1.9e-18  Score=162.61  Aligned_cols=251  Identities=15%  Similarity=0.221  Sum_probs=161.0

Q ss_pred             cccCcceEEEccCCCeeEEEecC------------------------CEEEEEeCCceeEEEeecCCCcccCCCCCCccc
Q 016318           67 QIQGPESMAFDPLGRGPYTGVAD------------------------GRILFWDGLKWTDFAFTSNNRSELCNPKPIATS  122 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~------------------------g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (391)
                      ++..|.+|++|++|+++.++..+                        ++|++++.+.-+......               
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------------   86 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG---------------   86 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC---------------
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC---------------
Confidence            46689999999999944444444                        258888775111111111               


Q ss_pred             cccccCccCccceEEEecCCCcEEEEECCCC-eEEEeCCCC--eeEEceecc----CCCcccCCcceeecC-CCCEEEEe
Q 016318          123 YLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGG--LATSLATEA----EGVPLRFTNDLDIDD-EGNVYFTD  194 (391)
Q Consensus       123 ~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g--~~~~~~~~~----~~~~~~~~~~l~~d~-~G~ly~td  194 (391)
                          ......|.++++++ +|+|||+|...+ |.++++++.  .+..+....    ....+..|++|++++ +|++|+++
T Consensus        87 ----~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d  161 (329)
T 3fvz_A           87 ----KNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD  161 (329)
T ss_dssp             ----TTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE
T ss_pred             ----CCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe
Confidence                01246799999998 789999998755 999999865  344443211    123466899999999 89999999


Q ss_pred             C-CCcccchhheeeecccCCCceEEEEeCCCCeEEEec----------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          195 S-STNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL----------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       195 ~-~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~----------~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                      + .                 +++|.+|++++.....+.          ..+..|++|++++++..+||++..+++|.+++
T Consensus       162 ~~~-----------------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~  224 (329)
T 3fvz_A          162 GYC-----------------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFK  224 (329)
T ss_dssp             CSS-----------------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCC-----------------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEE
Confidence            5 3                 478999997655555442          13456999999999556999999999999999


Q ss_pred             ec-cccCccceeecc--cCCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceE
Q 016318          264 LI-GEKAGNLEAFAI--LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAM  340 (391)
Q Consensus       264 ~~-g~~~g~~~~~~~--~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (391)
                      .+ |..   ...+..  ....|.+++..+ |.+++..... .     ++                         ......
T Consensus       225 ~~~G~~---~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~-~-----v~-------------------------~~~~~~  269 (329)
T 3fvz_A          225 TDTKEF---VREIKHASFGRNVFAISYIP-GFLFAVNGKP-Y-----FG-------------------------DQEPVQ  269 (329)
T ss_dssp             TTTCCE---EEEECCTTTTTCEEEEEEET-TEEEEEECCC-C-----TT-------------------------CSCCCC
T ss_pred             CCCCcE---EEEEeccccCCCcceeeecC-CEEEEeCCCE-E-----ec-------------------------cCCCcE
Confidence            76 421   112211  112345566666 5444432210 0     00                         011123


Q ss_pred             EEEEC-CCCCEEEEEeCCCCCeeeceeEEEEE-CCEEEEecCCCCeEEEEeC
Q 016318          341 AVKYS-PEGKILQVLEDSKGKVVKAISEVEEK-DGKLWMGSVLMPFVAVYDL  390 (391)
Q Consensus       341 v~~~d-~~g~~~~~~~~~~g~~~~~is~~~~~-~g~Lylgs~~~~~i~~~~~  390 (391)
                      +..++ .+|+.+..+....+. +.....+..+ +|+||++...+..|.++++
T Consensus       270 v~~~~~~~g~~~~~~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          270 GFVMNFSSGEIIDVFKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             EEEEETTTCCEEEEECCSSSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             EEEEEcCCCeEEEEEcCCCCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            44455 568877777533332 3345556554 4899999999999999875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.82  E-value=2.2e-17  Score=151.66  Aligned_cols=231  Identities=12%  Similarity=0.201  Sum_probs=164.4

Q ss_pred             cccCcceEEEccCCCeeEEEec-CCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           67 QIQGPESMAFDPLGRGPYTGVA-DGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ....|.+|+++++|+ +|++.. +++|.+++.+ .+..+...                     .....|.++++++ +|+
T Consensus        60 ~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~g~~~~~~~~---------------------~~~~~~~~i~~~~-~g~  116 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGD-IWFTENGANKIGKLSKKGGFTEYPLP---------------------QPDSGPYGITEGL-NGD  116 (300)
T ss_dssp             TTCCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEECS---------------------STTCCEEEEEECS-TTC
T ss_pred             CCCcceeEEECCCCC-EEEEecCCCeEEEECCCCCeEEecCC---------------------CCCCCCccceECC-CCC
Confidence            346899999999999 565554 7899999877 43333210                     1135689999998 799


Q ss_pred             EEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 LYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      |||++.. .+|++++++ +++..+...   .....|++++++++|++|+++..                 .++|+++|+ 
T Consensus       117 l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~~~i~~d~~g~l~v~~~~-----------------~~~i~~~~~-  174 (300)
T 2qc5_A          117 IWFTQLNGDRIGKLTAD-GTIYEYDLP---NKGSYPAFITLGSDNALWFTENQ-----------------NNSIGRITN-  174 (300)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEECS---STTCCEEEEEECTTSSEEEEETT-----------------TTEEEEECT-
T ss_pred             EEEEccCCCeEEEECCC-CCEEEccCC---CCCCCceeEEECCCCCEEEEecC-----------------CCeEEEECC-
Confidence            9999985 459999998 655544211   12457899999999999999854                 468999998 


Q ss_pred             CCeEEEec--cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec--ccCCCCCceEeCCCCCEEEEEcC
Q 016318          224 TKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       224 ~~~~~~~~--~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~--~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      +++...+.  .....|.+++++++++ +|+++...++|.+++.+|    +...+.  .....|.+|++|++|++|++...
T Consensus       175 ~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  249 (300)
T 2qc5_A          175 TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITTTG----EISEYDIPTPNARPHAITAGKNSEIWFTEWG  249 (300)
T ss_dssp             TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             CCcEEEeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcCCC----cEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence            56655443  3456799999999997 999988888999998633    222221  11235789999999999999855


Q ss_pred             CCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEE-CCEEEEe
Q 016318          300 RRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEK-DGKLWMG  378 (391)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~-~g~Lylg  378 (391)
                      .                                      ..+.+++++|+.. .+..+.+.  ..+..+..+ +|+||++
T Consensus       250 ~--------------------------------------~~i~~~~~~g~~~-~~~~~~~~--~~~~~i~~~~~g~l~v~  288 (300)
T 2qc5_A          250 A--------------------------------------NQIGRITNDNTIQ-EYQLQTEN--AEPHGITFGKDGSVWFA  288 (300)
T ss_dssp             T--------------------------------------TEEEEECTTSCEE-EEECCSTT--CCCCCEEECTTSCEEEE
T ss_pred             C--------------------------------------CeEEEECCCCcEE-EEECCccC--CccceeEeCCCCCEEEE
Confidence            3                                      3366788877654 44333222  234555554 5999999


Q ss_pred             cCCCCeEEEEeC
Q 016318          379 SVLMPFVAVYDL  390 (391)
Q Consensus       379 s~~~~~i~~~~~  390 (391)
                      +. + .|.+++.
T Consensus       289 ~~-~-~i~~~~p  298 (300)
T 2qc5_A          289 LK-C-KIGKLNL  298 (300)
T ss_dssp             CS-S-EEEEEEE
T ss_pred             cc-C-ceEEeCC
Confidence            98 6 8888764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.81  E-value=1.6e-17  Score=152.51  Aligned_cols=231  Identities=10%  Similarity=0.158  Sum_probs=162.8

Q ss_pred             ccCcceEEEccCCCeeEEEe-cCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           68 IQGPESMAFDPLGRGPYTGV-ADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~-~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      ...|.+|++|++|+ +|++. .+++|++++.+ .+..+...                     .....|.++++++ +|+|
T Consensus        56 ~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~---------------------~~~~~~~~i~~~~-~g~l  112 (299)
T 2z2n_A           56 DAKVMCLTISSDGE-VWFTENAANKIGRITKKGIIKEYTLP---------------------NPDSAPYGITEGP-NGDI  112 (299)
T ss_dssp             TCCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEECS---------------------STTCCEEEEEECT-TSCE
T ss_pred             cCceeeEEECCCCC-EEEeCCCCCeEEEECCCCcEEEEeCC---------------------CcCCCceeeEECC-CCCE
Confidence            46799999999999 55555 47899999876 44333210                     1145789999998 7899


Q ss_pred             EEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          146 YIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       146 ~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      ||++.. .+|+++|+ +++...+....   ....|++++++++|++|+++..                 .++|+++|+ +
T Consensus       113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~-~  170 (299)
T 2z2n_A          113 WFTEMNGNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTENQ-----------------NNAIGRITE-S  170 (299)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-T
T ss_pred             EEEecCCceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeCC-----------------CCEEEEEcC-C
Confidence            999876 45999999 55555443221   2357899999999999999853                 468999999 6


Q ss_pred             CeEEEe--ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCCCCCceEeCCCCCEEEEEcCC
Q 016318          225 KQTTVL--LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       225 ~~~~~~--~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      ++...+  ......|++++++++++ +|+++...++|.+++..+    +...+..  ....|.+|++|++|++|++....
T Consensus       171 g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  245 (299)
T 2z2n_A          171 GDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTSG----EITEFKIPTPNARPHAITAGAGIDLWFTEWGA  245 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             CcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECCCC----cEEEEECCCCCCCceeEEECCCCCEEEeccCC
Confidence            776654  23456789999999998 999988788999998632    2333311  11468899999999999997543


Q ss_pred             CchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEECCEEEEecC
Q 016318          301 RSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSV  380 (391)
Q Consensus       301 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs~  380 (391)
                                                            ..+.++|++|+ +..+..+.+.  ..+..+...+|+||+++.
T Consensus       246 --------------------------------------~~i~~~d~~g~-~~~~~~~~~~--~~~~~i~~~~g~l~v~~~  284 (299)
T 2z2n_A          246 --------------------------------------NKIGRLTSNNI-IEEYPIQIKS--AEPHGICFDGETIWFAME  284 (299)
T ss_dssp             --------------------------------------TEEEEEETTTE-EEEEECSSSS--CCEEEEEECSSCEEEEET
T ss_pred             --------------------------------------ceEEEECCCCc-eEEEeCCCCC--CccceEEecCCCEEEEec
Confidence                                                  23666777664 3444333221  223444446799999976


Q ss_pred             CCCeEEEEeC
Q 016318          381 LMPFVAVYDL  390 (391)
Q Consensus       381 ~~~~i~~~~~  390 (391)
                       ...|.+++.
T Consensus       285 -~~~l~~~~~  293 (299)
T 2z2n_A          285 -CDKIGKLTL  293 (299)
T ss_dssp             -TTEEEEEEE
T ss_pred             -CCcEEEEEc
Confidence             678888764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.81  E-value=5.9e-18  Score=160.34  Aligned_cols=202  Identities=14%  Similarity=0.169  Sum_probs=136.1

Q ss_pred             cCcceEEEccCCCeeEEEec---CC--EEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           69 QGPESMAFDPLGRGPYTGVA---DG--RILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~---~g--~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      ..|++|+++++|+ +|++..   ++  +|++++......|..   .....|             .....|+|+++|+ +|
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~~~p~---~~~~~~-------------~~~~~p~gv~~d~-~g   78 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLIPFPP---QSGNAI-------------ITFDTVLGIKSDG-NG   78 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEEESCC---CCSSCC-------------CCCSCEEEEEECS-SS
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCeecCCC---cccCcc-------------cceeEeeEEEEcC-CC
Confidence            5899999999999 666532   23  788887223332211   000011             1256899999998 79


Q ss_pred             cEEEEECC------CCeEEEeCCCCee-EEceec-cCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCC
Q 016318          144 DLYIADAY------FGLMKVGPEGGLA-TSLATE-AEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       144 ~L~V~d~~------~gl~~~d~~~g~~-~~~~~~-~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      +|||+|..      ..|+++|++++++ +.+... ....+..+++++++++ +|.+|+++++..              ..
T Consensus        79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--------------~~  144 (343)
T 2qe8_A           79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--------------DK  144 (343)
T ss_dssp             EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--------------GG
T ss_pred             cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--------------CC
Confidence            99999975      4699999998874 333221 1123345789999996 579999996311              14


Q ss_pred             ceEEEEeCCCCeEEEeccC------------------------------CCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318          215 GRVLKYDPTTKQTTVLLRN------------------------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  264 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~------------------------------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~  264 (391)
                      ++|++||+.+++.....+.                              ...+|||+++||++.||++++.+.+|++++.
T Consensus       145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~  224 (343)
T 2qe8_A          145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS  224 (343)
T ss_dssp             CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred             CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence            5788888876665443321                              0247999999999999999998889999985


Q ss_pred             cc---ccCccceeec-----ccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          265 IG---EKAGNLEAFA-----ILPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       265 ~g---~~~g~~~~~~-----~~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      +.   ...+..+.+.     ...+.|++|++|++|++|++......
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~  270 (343)
T 2qe8_A          225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSA  270 (343)
T ss_dssp             HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTE
T ss_pred             HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCe
Confidence            31   1111112111     12357999999999999999876543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.81  E-value=7.1e-17  Score=148.20  Aligned_cols=185  Identities=14%  Similarity=0.246  Sum_probs=135.2

Q ss_pred             ccccCcceEEEccCCCeeEEEec-CCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVA-DGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      .....|.+|++|++|+ +|+++. +++|.+++.+ .+..+...                     .....|.++++++ +|
T Consensus        12 ~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~~~~~~~~~~---------------------~~~~~~~~i~~~~-~g   68 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGK-VWITQHKANMISCINLDGKITEYPLP---------------------TPDAKVMCLTISS-DG   68 (299)
T ss_dssp             SSSCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEEEECS---------------------STTCCEEEEEECT-TS
T ss_pred             CcCCCccceEECCCCC-EEEEecCCCcEEEEcCCCCeEEecCC---------------------cccCceeeEEECC-CC
Confidence            3456899999999999 666665 6899999877 33332210                     1135689999998 79


Q ss_pred             cEEEEECCC-CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          144 DLYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       144 ~L~V~d~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      ++|+++... +|++++++ ++++.+...   .....|++++++++|++|+++..                 .++|+++|+
T Consensus        69 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~d~  127 (299)
T 2z2n_A           69 EVWFTENAANKIGRITKK-GIIKEYTLP---NPDSAPYGITEGPNGDIWFTEMN-----------------GNRIGRITD  127 (299)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT
T ss_pred             CEEEeCCCCCeEEEECCC-CcEEEEeCC---CcCCCceeeEECCCCCEEEEecC-----------------CceEEEECC
Confidence            999998854 59999987 455544321   12357899999999999999853                 468999999


Q ss_pred             CCCeEEEec--cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec--ccCCCCCceEeCCCCCEEEEEc
Q 016318          223 TTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPGYPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       223 ~~~~~~~~~--~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~--~~~g~p~~i~~d~~G~lwva~~  298 (391)
                       +++...+.  .....|++++++++++ +|+++...++|++++.+    ++...+.  .....|.+|++|++|++|++..
T Consensus       128 -~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  201 (299)
T 2z2n_A          128 -DGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITES----GDITEFKIPTPASGPVGITKGNDDALWFVEI  201 (299)
T ss_dssp             -TCCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT----CCEEEEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred             -CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcCC----CcEEEeeCCCCCCcceeEEECCCCCEEEEcc
Confidence             56655443  2356799999999997 99998878899999863    2333321  1123578999999999999986


Q ss_pred             CC
Q 016318          299 CR  300 (391)
Q Consensus       299 ~~  300 (391)
                      ..
T Consensus       202 ~~  203 (299)
T 2z2n_A          202 IG  203 (299)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.79  E-value=2.5e-17  Score=150.19  Aligned_cols=189  Identities=17%  Similarity=0.168  Sum_probs=138.9

Q ss_pred             ccCcceEEEccC-CCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           68 IQGPESMAFDPL-GRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        68 ~~gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ...|+++++|++ ++++|++..+++|.+++.+ . ...+.                      ......|.++++|+++++
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~----------------------~~~~~~p~~ia~d~~~~~   92 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII----------------------RQDLGSPEGIALDHLGRT   92 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE----------------------CTTCCCEEEEEEETTTTE
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE----------------------ECCCCCccEEEEEecCCe
Confidence            458999999985 5555666678899999876 2 11111                      011367999999985689


Q ss_pred             EEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          145 LYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       145 L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      ||++|...+ |.+++.++...+.+...    .+..|+++++|+ +|+||+++..               ..+++|++++.
T Consensus        93 lyv~d~~~~~I~~~~~~g~~~~~~~~~----~~~~P~~i~vd~~~g~lyv~~~~---------------~~~~~I~~~~~  153 (267)
T 1npe_A           93 IFWTDSQLDRIEVAKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHM  153 (267)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEET
T ss_pred             EEEEECCCCEEEEEEcCCCCEEEEEEC----CCCCccEEEEeeCCCEEEEEECC---------------CCCcEEEEEec
Confidence            999998755 99999987654444321    245799999999 5799999953               12468999988


Q ss_pred             CCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCC
Q 016318          223 TTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       223 ~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~  301 (391)
                      ++...+++. ..+..|+|++++++++.||++++..++|++++.+|.   ....+......|++|++| ++++|++.....
T Consensus       154 dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~  229 (267)
T 1npe_A          154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGLQYPFAVTSY-GKNLYYTDWKTN  229 (267)
T ss_dssp             TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECCCSEEEEEEE-TTEEEEEETTTT
T ss_pred             CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEecCCCCceEEEEe-CCEEEEEECCCC
Confidence            765555443 567789999999998889999999999999998763   223333333579999998 688999987653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.78  E-value=2.9e-17  Score=156.14  Aligned_cols=191  Identities=17%  Similarity=0.174  Sum_probs=144.7

Q ss_pred             cccCcceEEEcc-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           67 QIQGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        67 ~~~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      .+..|+++++|+ ++.++|++..+++|.+++.+  ..+.+..                      .....|.|+++|..++
T Consensus        71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~----------------------~~~~~p~glavd~~~g  128 (349)
T 3v64_C           71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS----------------------TGLESPGGLAVDWVHD  128 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------------SSCSCCCEEEEETTTT
T ss_pred             CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe----------------------CCCCCccEEEEecCCC
Confidence            467899999995 56777788888999999877  2222211                      1145799999997678


Q ss_pred             cEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          144 DLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       144 ~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      +||++|...+ |.+++.++...+.+..    ..+..|++|++|+ +|.||++|...                .++|.+++
T Consensus       129 ~ly~~d~~~~~I~~~~~dG~~~~~l~~----~~l~~P~~iavdp~~g~ly~td~~~----------------~~~I~r~~  188 (349)
T 3v64_C          129 KLYWTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASS  188 (349)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEEC----TTCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEE
T ss_pred             eEEEEcCCCCeEEEEcCCCCceEEEEe----CCCCCcceEEEecCcCeEEEeccCC----------------CCEEEEEe
Confidence            9999998754 9999998765554432    1246799999997 67999999651                37899999


Q ss_pred             CCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCceEeCCCCCEEEEEcC
Q 016318          222 PTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       222 ~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      .++...+++. .++..||||+++++++.||++++..++|++++++|.   ..+.+. ...+.|++|+++ +|++|++...
T Consensus       189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~---~~~~~~~~~~~~P~giav~-~~~ly~td~~  264 (349)
T 3v64_C          189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---HRKAVISQGLPHPFAITVF-EDSLYWTDWH  264 (349)
T ss_dssp             TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEE-TTEEEEEETT
T ss_pred             CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC---ceEEEEeCCCCCceEEEEE-CCEEEEecCC
Confidence            8876666654 567899999999988889999999999999998873   223333 223579999995 5789999877


Q ss_pred             CCch
Q 016318          300 RRSL  303 (391)
Q Consensus       300 ~~~~  303 (391)
                      ...+
T Consensus       265 ~~~V  268 (349)
T 3v64_C          265 TKSI  268 (349)
T ss_dssp             TTEE
T ss_pred             CCeE
Confidence            6543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.76  E-value=4.9e-17  Score=156.64  Aligned_cols=190  Identities=17%  Similarity=0.170  Sum_probs=143.4

Q ss_pred             cccCcceEEEcc-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           67 QIQGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        67 ~~~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      .+..|+++++|+ ++.++|++..+++|++++.+  ..+.+..                      .....|.|+++|+.++
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~----------------------~~~~~p~glavd~~~g  171 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS----------------------TGLESPGGLAVDWVHD  171 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC----------------------SSCSCCCCEEEETTTT
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe----------------------CCCCCccEEEEEeCCC
Confidence            467899999995 56777788889999999887  2222211                      1145799999997678


Q ss_pred             cEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          144 DLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       144 ~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      +||++|...+ |.++++++...+.+..    ..+..|++|++|+ +|.||+++...                .++|++++
T Consensus       172 ~lY~~d~~~~~I~~~~~dg~~~~~l~~----~~l~~P~giavdp~~g~ly~td~~~----------------~~~I~r~~  231 (386)
T 3v65_B          172 KLYWTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASS  231 (386)
T ss_dssp             EEEEEETTTTEEEECBTTSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEE
T ss_pred             eEEEEcCCCCeEEEEeCCCCceEEeec----CCCCCCcEEEEEcCCCeEEEeccCC----------------CCEEEEEe
Confidence            9999998755 9999998765554432    1256799999997 67899999641                37899999


Q ss_pred             CCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCceEeCCCCCEEEEEcC
Q 016318          222 PTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       222 ~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      +++...+++. .++..||||+++++++.|||+++..++|++++++|.   ..+.+. ...+.|++|+++ ++++|++...
T Consensus       232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~P~giav~-~~~ly~td~~  307 (386)
T 3v65_B          232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---HRKAVISQGLPHPFAITVF-EDSLYWTDWH  307 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC---SCEEEECSSCSSEEEEEEE-TTEEEEEETT
T ss_pred             CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC---eeEEEEECCCCCceEEEEE-CCEEEEeeCC
Confidence            9876655554 567889999999988889999999999999998873   223333 223579999995 5678888876


Q ss_pred             CCc
Q 016318          300 RRS  302 (391)
Q Consensus       300 ~~~  302 (391)
                      ...
T Consensus       308 ~~~  310 (386)
T 3v65_B          308 TKS  310 (386)
T ss_dssp             TTE
T ss_pred             CCe
Confidence            544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.76  E-value=1.4e-16  Score=149.18  Aligned_cols=194  Identities=15%  Similarity=0.170  Sum_probs=142.5

Q ss_pred             cccCcceEEEccC-CCeeEEEecCCEEEEEeCCce---eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           67 QIQGPESMAFDPL-GRGPYTGVADGRILFWDGLKW---TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        67 ~~~gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      .+..|+++++|++ +.++|++..+++|.+++.+..   .....                   ........|.||++|..+
T Consensus        28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~-------------------~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-------------------VISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE-------------------EECSSCSCCCEEEEETTT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE-------------------EEeCCCCCcCEEEEeecC
Confidence            3678999999975 567777888899999987520   00000                   001124679999999657


Q ss_pred             CcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          143 GDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       143 g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      ++||++|...+ |.++++++...+.+...    .+..|+++++|+ +|.||+++.+                ..++|+++
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~----------------~~~~I~~~  148 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKG  148 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEE
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEEC----CCCCcceEEeCCCCCEEEEEccC----------------CCCeEEEE
Confidence            89999998755 99999987766655432    245799999997 6799999954                13689999


Q ss_pred             eCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc---cCCCCCceEeCCCCCEEEE
Q 016318          221 DPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LPGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       221 d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~---~~g~p~~i~~d~~G~lwva  296 (391)
                      ++++...+++. ..+..|+||+++++++.||++++..++|.+++++|.   ..+.+..   ..+.|++|+++. |++|++
T Consensus       149 ~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~---~~~~~~~~~~~~~~P~giav~~-~~ly~~  224 (316)
T 1ijq_A          149 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFE-DKVFWT  224 (316)
T ss_dssp             ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEEECTTTTSSEEEEEEET-TEEEEE
T ss_pred             cCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC---ceEEEeecCCccCCcEEEEEEC-CEEEEE
Confidence            98766555554 567899999999998889999999999999998873   2344433   235799999974 789998


Q ss_pred             EcCCCch
Q 016318          297 IHCRRSL  303 (391)
Q Consensus       297 ~~~~~~~  303 (391)
                      ......+
T Consensus       225 d~~~~~V  231 (316)
T 1ijq_A          225 DIINEAI  231 (316)
T ss_dssp             ETTTTEE
T ss_pred             ECCCCeE
Confidence            8765543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.75  E-value=1.1e-15  Score=145.29  Aligned_cols=147  Identities=16%  Similarity=0.241  Sum_probs=114.6

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheee
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~  207 (391)
                      ..+|.|+++|+.++.||++|...+ |++++++++..+.+...    .+..|+++++|+ .|+||++++.           
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----~~~~p~glavd~~~g~ly~~d~~-----------  136 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----GLESPGGLAVDWVHDKLYWTDSG-----------  136 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----SCSCCCEEEEETTTTEEEEEETT-----------
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC----CCCCccEEEEecCCCeEEEEcCC-----------
Confidence            467999999976889999998755 99999998766554321    245789999996 6799999965           


Q ss_pred             ecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCC-CeEEEEEeccccCccceeec-ccCCCCCc
Q 016318          208 VFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFA-ILPGYPDN  284 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~-~~I~~~~~~g~~~g~~~~~~-~~~g~p~~  284 (391)
                            .++|.+++.++...+++. ..+..|++|+++|++..||+++... ++|+|++++|..   .+.+. ..-..|++
T Consensus       137 ------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnG  207 (349)
T 3v64_C          137 ------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNG  207 (349)
T ss_dssp             ------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEESCCSSCSCEEE
T ss_pred             ------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC---cEEEEECCCCCcce
Confidence                  468999998876655554 5678999999999888899999988 999999988742   23332 22246999


Q ss_pred             eEeCC-CCCEEEEEcCC
Q 016318          285 VRTNE-KGEFWVAIHCR  300 (391)
Q Consensus       285 i~~d~-~G~lwva~~~~  300 (391)
                      |++|+ ++++|++....
T Consensus       208 la~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          208 LTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             EEEETTTTEEEEEETTT
T ss_pred             EEEeCCCCEEEEEECCC
Confidence            99995 67799998664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.73  E-value=2.5e-15  Score=144.74  Aligned_cols=147  Identities=16%  Similarity=0.241  Sum_probs=114.2

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheee
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~  207 (391)
                      ..+|.|+++|+.++.||++|...+ |++++++++..+.+...    .+..|+++++|+ .|+||++++.           
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----~~~~p~glavd~~~g~lY~~d~~-----------  179 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----GLESPGGLAVDWVHDKLYWTDSG-----------  179 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS----SCSCCCCEEEETTTTEEEEEETT-----------
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC----CCCCccEEEEEeCCCeEEEEcCC-----------
Confidence            567999999976789999998765 99999998766654321    245789999996 6899999965           


Q ss_pred             ecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCC-CeEEEEEeccccCccceeec-ccCCCCCc
Q 016318          208 VFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFA-ILPGYPDN  284 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~-~~I~~~~~~g~~~g~~~~~~-~~~g~p~~  284 (391)
                            .++|.+++.+++..+++. .++..|++|+++|++..||+++... ++|+|++++|..   ...+. ..-..|++
T Consensus       180 ------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnG  250 (386)
T 3v65_B          180 ------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNG  250 (386)
T ss_dssp             ------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEE
T ss_pred             ------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC---cEEEEECCCCCeee
Confidence                  468999998766555544 5678999999999888899999987 899999988742   22332 22246999


Q ss_pred             eEeCC-CCCEEEEEcCC
Q 016318          285 VRTNE-KGEFWVAIHCR  300 (391)
Q Consensus       285 i~~d~-~G~lwva~~~~  300 (391)
                      |++|+ ++++|++....
T Consensus       251 lavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          251 LTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             EEEEGGGTEEEEEETTT
T ss_pred             EEEeCCCCEEEEEECCC
Confidence            99994 67799998664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.73  E-value=4.7e-16  Score=141.02  Aligned_cols=189  Identities=21%  Similarity=0.278  Sum_probs=137.0

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ..+..|.+|+++++|+ +|++..+++|.+++.+ .....  ..                   ......|.++++++ +|+
T Consensus        64 ~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~~~--~~-------------------~~~~~~p~~i~~~~-~g~  120 (270)
T 1rwi_B           64 NGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTV--LP-------------------FDGLNYPEGLAVDT-QGA  120 (270)
T ss_dssp             CSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEE--CC-------------------CCSCSSEEEEEECT-TCC
T ss_pred             CCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceEee--ee-------------------cCCcCCCcceEECC-CCC
Confidence            3456899999999999 7776668899999876 21110  00                   01135689999998 789


Q ss_pred             EEEEECCC-CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 LYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L~V~d~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      |||++... .|++++..+.......    ......|++|+++++|++|+++..                 +++|.+||++
T Consensus       121 l~v~~~~~~~i~~~~~~~~~~~~~~----~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~  179 (270)
T 1rwi_B          121 VYVADRGNNRVVKLAAGSKTQTVLP----FTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAE  179 (270)
T ss_dssp             EEEEEGGGTEEEEECTTCCSCEECC----CCSCCSCCCEEECTTCCEEEEEGG-----------------GTEEEEECTT
T ss_pred             EEEEECCCCEEEEEECCCceeEeec----cccCCCceeEEEeCCCCEEEEECC-----------------CCEEEEEecC
Confidence            99999764 4999976654333221    112457999999999999999853                 4689999998


Q ss_pred             CCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCceEeCCCCCEEEEEcCCC
Q 016318          224 TKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       224 ~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~~d~~G~lwva~~~~~  301 (391)
                      ++...... ..+..|++|+++++|+ +|+++..+++|++++.++...   .... .....|.+|+++++|++|++.....
T Consensus       180 ~~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  255 (270)
T 1rwi_B          180 SNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTS---TVLPFTGLNTPLAVAVDSDRTVYVADRGND  255 (270)
T ss_dssp             TCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCC---EECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred             CCceEeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCcc---eeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence            77665443 4457899999999996 999998888999998765321   1111 1113588999999999999987654


Q ss_pred             c
Q 016318          302 S  302 (391)
Q Consensus       302 ~  302 (391)
                      .
T Consensus       256 ~  256 (270)
T 1rwi_B          256 R  256 (270)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=1.5e-15  Score=148.95  Aligned_cols=246  Identities=15%  Similarity=0.154  Sum_probs=166.3

Q ss_pred             cccccCcceEEEccC--CCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEE-
Q 016318           65 LNQIQGPESMAFDPL--GRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF-  138 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~--G~~ly~~~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~-  138 (391)
                      .+.+..|..|++||+  ++ ||++.. +++|.+++.+  .+..+...+.                   ....+|.+|++ 
T Consensus       135 ~~~~~~p~~la~dp~~~~~-Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-------------------~~~~~p~~ia~~  194 (496)
T 3kya_A          135 CCGFSDNGRLAFDPLNKDH-LYICYDGHKAIQLIDLKNRMLSSPLNINT-------------------IPTNRIRSIAFN  194 (496)
T ss_dssp             CBCCCSEEEEEEETTEEEE-EEEEEETEEEEEEEETTTTEEEEEECCTT-------------------SSCSBEEEEEEC
T ss_pred             ccccCCCCEEEEccCCCCE-EEEEECCCCeEEEEECCCCEEEEEEccCc-------------------cccCCCcEEEEe
Confidence            556778999999973  55 777665 4789999877  4444432110                   12467999999 


Q ss_pred             ------ecCCCcEEEEECCC-------CeEEEeCCC-CeeE------EceeccCCCcccCCcceeecC-CCCEEEEeCCC
Q 016318          139 ------DKKTGDLYIADAYF-------GLMKVGPEG-GLAT------SLATEAEGVPLRFTNDLDIDD-EGNVYFTDSST  197 (391)
Q Consensus       139 ------d~~~g~L~V~d~~~-------gl~~~d~~~-g~~~------~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~  197 (391)
                            +++++.|||++...       .++.++... |.+.      .+.      .+..|+++++++ +|.||+++.. 
T Consensus       195 ~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~-  267 (496)
T 3kya_A          195 KKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYE-  267 (496)
T ss_dssp             CCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETT-
T ss_pred             ecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECC-
Confidence                  98433499999875       278886554 3332      221      245799999999 6899999964 


Q ss_pred             cccchhheeeecccCCCceEEEEeCC-------CCeE------------EEe--ccCCCCcceEEEccCCCEEEEEeCCC
Q 016318          198 NYQRRNFMQLVFSAEDTGRVLKYDPT-------TKQT------------TVL--LRNLQFPNGLSLSKDKSFFVFCEGSV  256 (391)
Q Consensus       198 ~~~~~~~~~~~~~~~~~g~l~~~d~~-------~~~~------------~~~--~~~~~~~ngia~~~d~~~l~v~et~~  256 (391)
                                      +++|++||++       +++.            +.+  ......|.+|+++|+|+.|||+++.+
T Consensus       268 ----------------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~  331 (496)
T 3kya_A          268 ----------------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINN  331 (496)
T ss_dssp             ----------------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             ----------------CCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCC
Confidence                            5789999987       5654            122  12234688999999999999999999


Q ss_pred             CeEEEEEeccccC--ccceeeccc---C------------CCCC-ceEeC-------CCCCEEEEEcCCCchhhhhhhcC
Q 016318          257 GRLHKYWLIGEKA--GNLEAFAIL---P------------GYPD-NVRTN-------EKGEFWVAIHCRRSLYSHLMALY  311 (391)
Q Consensus       257 ~~I~~~~~~g~~~--g~~~~~~~~---~------------g~p~-~i~~d-------~~G~lwva~~~~~~~~~~~l~~~  311 (391)
                      ++|+|++.++...  .....++..   .            ..|. +++++       .+|+|||+...+++         
T Consensus       332 h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~r---------  402 (496)
T 3kya_A          332 HYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFC---------  402 (496)
T ss_dssp             TEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTE---------
T ss_pred             CEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCE---------
Confidence            9999988776321  111222211   1            2477 77887       68899999877533         


Q ss_pred             ccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeC--------------CCC-----CeeeceeEEEEEC
Q 016318          312 PKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLED--------------SKG-----KVVKAISEVEEKD  372 (391)
Q Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~--------------~~g-----~~~~~is~~~~~~  372 (391)
                                                   |.+++++|.+......              .+|     ..++..+.+..+.
T Consensus       403 -----------------------------Ir~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~  453 (496)
T 3kya_A          403 -----------------------------VRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD  453 (496)
T ss_dssp             -----------------------------EEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred             -----------------------------EEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence                                         4556666654433322              112     1244556676553


Q ss_pred             --CEEEEecCCCCeEEEEeCC
Q 016318          373 --GKLWMGSVLMPFVAVYDLS  391 (391)
Q Consensus       373 --g~Lylgs~~~~~i~~~~~~  391 (391)
                        |.||+....+++|.++.++
T Consensus       454 ~~g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          454 VKEMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             TTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEECC
Confidence              8999999999999998763

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.73  E-value=4.2e-16  Score=146.08  Aligned_cols=190  Identities=18%  Similarity=0.188  Sum_probs=142.0

Q ss_pred             ccCcceEEEcc-CCCeeEEEecCCEEEEEeCC-ce--eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           68 IQGPESMAFDP-LGRGPYTGVADGRILFWDGL-KW--TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        68 ~~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      +..|.++++|+ ++.++|++..+++|.+++.+ ..  ..+..                      .....|.|+++|..++
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~----------------------~~l~~p~glavd~~~g   91 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV----------------------SGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE----------------------ECCSCCCEEEEETTTT
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc----------------------CCCCCccEEEEEcCCC
Confidence            55788999987 57778888899999999876 21  11111                      1146799999996578


Q ss_pred             cEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          144 DLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       144 ~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      +||++|...+ |.++++++...+.+..    ..+..|+++++|+ .|.||+++.+                ..++|++++
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~----~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~  151 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAG  151 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEEC----SSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEe----CCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEE
Confidence            9999998755 9999998765555532    2346799999997 5899999953                147899999


Q ss_pred             CCCCeEEEe-ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcC
Q 016318          222 PTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       222 ~~~~~~~~~-~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      .++...+++ ..++..||||+++++++.||++++..++|++++++|.   ..+.+.. .-+.|++|+++.+ .+|++...
T Consensus       152 ~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~P~glav~~~-~lywtd~~  227 (318)
T 3sov_A          152 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT---NRQAVVKGSLPHPFALTLFED-ILYWTDWS  227 (318)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSCCSCEEEEEEETT-EEEEEETT
T ss_pred             cCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC---ceEEEecCCCCCceEEEEeCC-EEEEEecC
Confidence            876555554 3668899999999988889999999999999999873   2344433 3357999999854 56667766


Q ss_pred             CCch
Q 016318          300 RRSL  303 (391)
Q Consensus       300 ~~~~  303 (391)
                      ...+
T Consensus       228 ~~~V  231 (318)
T 3sov_A          228 THSI  231 (318)
T ss_dssp             TTEE
T ss_pred             CCeE
Confidence            5443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.72  E-value=1.9e-15  Score=142.11  Aligned_cols=221  Identities=13%  Similarity=0.133  Sum_probs=148.4

Q ss_pred             ccCcceEEEccCCCeeEEEe-cCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           68 IQGPESMAFDPLGRGPYTGV-ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ...|++|+++++|+ +|++. .++.|.++|....+........               ........|.+|+++  +++||
T Consensus        83 ~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g---------------~~~~~~~~p~~i~~~--~~~ly  144 (328)
T 3dsm_A           83 FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECP---------------DMDMESGSTEQMVQY--GKYVY  144 (328)
T ss_dssp             CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECT---------------TCCTTTCBCCCEEEE--TTEEE
T ss_pred             CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcC---------------CccccCCCcceEEEE--CCEEE
Confidence            46899999988886 78777 7899999998732222111100               000012378999994  78999


Q ss_pred             EEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          147 IADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       147 V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      |++..  ..|.++|++++++......     ...|++++++++|++|+++.+....       .......++|+++|+++
T Consensus       145 v~~~~~~~~v~viD~~t~~~~~~i~~-----g~~p~~i~~~~dG~l~v~~~~~~~~-------~~~~~~~~~v~~id~~t  212 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDKVVDELTI-----GIQPTSLVMDKYNKMWTITDGGYEG-------SPYGYEAPSLYRIDAET  212 (328)
T ss_dssp             EEECTTCCEEEEEETTTTEEEEEEEC-----SSCBCCCEECTTSEEEEEBCCBCTT-------CSSCBCCCEEEEEETTT
T ss_pred             EEcCCCCCEEEEEECCCCeEEEEEEc-----CCCccceEEcCCCCEEEEECCCccC-------CccccCCceEEEEECCC
Confidence            99963  4599999998875543221     1358999999999999998541000       00001137899999999


Q ss_pred             CeEEEecc--CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc-CCCCCceEeCC-CCCEEEEEcCC
Q 016318          225 KQTTVLLR--NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL-PGYPDNVRTNE-KGEFWVAIHCR  300 (391)
Q Consensus       225 ~~~~~~~~--~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~-~g~p~~i~~d~-~G~lwva~~~~  300 (391)
                      +++.....  ....|++++++||++.+|+++.   .|++++.+..+... ..+... ...|++|++|+ +|++||+....
T Consensus       213 ~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~  288 (328)
T 3dsm_A          213 FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAID  288 (328)
T ss_dssp             TEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTT
T ss_pred             CeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEcccc
Confidence            88754332  2347999999999999999864   89999876533211 122221 24799999997 78899997321


Q ss_pred             CchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeC
Q 016318          301 RSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLED  356 (391)
Q Consensus       301 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~  356 (391)
                      -                                  ...+.+.+||++|+.+..+..
T Consensus       289 y----------------------------------~~~~~V~v~d~~g~~~~~i~~  310 (328)
T 3dsm_A          289 Y----------------------------------QQQGIVYRYSPQGKLIDEFYV  310 (328)
T ss_dssp             S----------------------------------SSEEEEEEECTTCCEEEEEEE
T ss_pred             c----------------------------------ccCCEEEEECCCCCEEEEEEe
Confidence            0                                  012567888888888877743

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.72  E-value=3.7e-15  Score=135.73  Aligned_cols=146  Identities=17%  Similarity=0.210  Sum_probs=110.8

Q ss_pred             CccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeee
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~  208 (391)
                      .+|.|+++|+++++||++|...+ |++++++++..+.+..    ..+..|++++++++ |++|+++..            
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----~~~~~p~~ia~d~~~~~lyv~d~~------------   99 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR----QDLGSPEGIALDHLGRTIFWTDSQ------------   99 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----TTCCCEEEEEEETTTTEEEEEETT------------
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE----CCCCCccEEEEEecCCeEEEEECC------------
Confidence            56899999986789999998765 9999998876554432    12457999999985 789999965            


Q ss_pred             cccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeec-ccCCCCCc
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFA-ILPGYPDN  284 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~  284 (391)
                           +++|.+++.++...+.+. .++..|+++++++++..+|+++..  +++|++++++|..   .+.+. .....|.+
T Consensus       100 -----~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---~~~~~~~~~~~P~g  171 (267)
T 1npe_A          100 -----LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQDNLGLPNG  171 (267)
T ss_dssp             -----TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECTTCSCEEE
T ss_pred             -----CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---cEEEEECCCCCCcE
Confidence                 478999998765544443 456789999999987779999976  5799999987742   23332 22247999


Q ss_pred             eEeCCC-CCEEEEEcCC
Q 016318          285 VRTNEK-GEFWVAIHCR  300 (391)
Q Consensus       285 i~~d~~-G~lwva~~~~  300 (391)
                      |++|++ +++|++....
T Consensus       172 ia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          172 LTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             EEEETTTTEEEEEETTT
T ss_pred             EEEcCCCCEEEEEECCC
Confidence            999986 4699988764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.71  E-value=6.5e-16  Score=157.50  Aligned_cols=192  Identities=18%  Similarity=0.147  Sum_probs=149.5

Q ss_pred             ccccCcceEEEcc-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           66 NQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        66 ~~~~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      ..+..|.+|++|+ +|.++|++..+++|.+++.+  ..+.+..                      .....|.||++|..+
T Consensus        34 ~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~----------------------~g~~~P~GlAvD~~~   91 (628)
T 4a0p_A           34 TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE----------------------FGLDYPEGMAVDWLG   91 (628)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------------SSCSCCCEEEEETTT
T ss_pred             CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe----------------------CCCCCcceEEEEeCC
Confidence            4467899999997 46667788888999999876  2232211                      114679999999767


Q ss_pred             CcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          143 GDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       143 g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      ++||++|...+ |.+++.++...+.+..    ..+..|++|++|+ +|.||++|.+.                .++|.+.
T Consensus        92 ~~LY~tD~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g~----------------~~~I~r~  151 (628)
T 4a0p_A           92 KNLYWADTGTNRIEVSKLDGQHRQVLVW----KDLDSPRALALDPAEGFMYWTEWGG----------------KPKIDRA  151 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTSTTCEEEEC----SSCCCEEEEEEETTTTEEEEEECSS----------------SCEEEEE
T ss_pred             CEEEEEECCCCEEEEEecCCCcEEEEEe----CCCCCcccEEEccCCCeEEEeCCCC----------------CCEEEEE
Confidence            89999999865 9999998776555542    2356799999997 78999999541                4689999


Q ss_pred             eCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318          221 DPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       221 d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      +.++...+++...+..|+||+++++++.||++++..++|++++++|..   .+++......|.+|+++. +++|++....
T Consensus       152 ~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~---~~v~~~~l~~P~glav~~-~~ly~tD~~~  227 (628)
T 4a0p_A          152 AMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN---REVIADDLPHPFGLTQYQ-DYIYWTDWSR  227 (628)
T ss_dssp             ETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECCSCEEEEEEET-TEEEEEETTT
T ss_pred             eCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc---eEEeeccCCCceEEEEEC-CEEEEecCCC
Confidence            998887888888899999999999988899999999999999998842   245544334799999986 6788887654


Q ss_pred             Cch
Q 016318          301 RSL  303 (391)
Q Consensus       301 ~~~  303 (391)
                      ..+
T Consensus       228 ~~I  230 (628)
T 4a0p_A          228 RSI  230 (628)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.71  E-value=1.7e-15  Score=146.56  Aligned_cols=194  Identities=15%  Similarity=0.166  Sum_probs=142.0

Q ss_pred             cccCcceEEEcc-CCCeeEEEecCCEEEEEeCCcee---EEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           67 QIQGPESMAFDP-LGRGPYTGVADGRILFWDGLKWT---DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        67 ~~~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      .+..|.+|++|+ ++.++|++..+++|++++.+...   ....                   ........|.||++|..+
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~-------------------~~~~~~~~p~glavD~~~  170 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-------------------VISRDIQAPDGLAVDWIH  170 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEE-------------------EECSSCSCEEEEEEETTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceE-------------------EEeCCCCCcccEEEEecC
Confidence            467899999996 56677788888999999876210   0000                   011124679999999757


Q ss_pred             CcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          143 GDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       143 g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      ++||++|...+ |.++++++...+.+...    .+..|++|++|+ .|.||++|.+.                .++|.++
T Consensus       171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~~~----~~~~P~~iavdp~~g~ly~td~~~----------------~~~I~~~  230 (400)
T 3p5b_L          171 SNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKG  230 (400)
T ss_dssp             TEEEEEETTTTEEEEECTTTCSEEEEEEC----SSCCEEEEEEETTTTEEEEEECSS----------------SCCEEEE
T ss_pred             CceEEEECCCCeEEEEeCCCCceEEEEeC----CCCCcceEEEecccCeEEEEeCCC----------------CCEEEEE
Confidence            89999998865 99999998766665432    245799999998 67999999541                3689999


Q ss_pred             eCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc---CCCCCceEeCCCCCEEEE
Q 016318          221 DPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL---PGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       221 d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~---~g~p~~i~~d~~G~lwva  296 (391)
                      +.++...+++. .++..|+||+++++++.|||+++..++|++++++|.   ..+.+...   -..|.+|+++. +++|++
T Consensus       231 ~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~l~~P~gl~v~~-~~lywt  306 (400)
T 3p5b_L          231 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFE-DKVFWT  306 (400)
T ss_dssp             ETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---CCEEEEECSSTTSSEEEEEEET-TEEEEE
T ss_pred             eCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC---ccEEEEeCCCCCCCCEEEEEeC-CEEEEe
Confidence            98876655554 567899999999988889999999999999999873   23334321   24689999965 467777


Q ss_pred             EcCCCch
Q 016318          297 IHCRRSL  303 (391)
Q Consensus       297 ~~~~~~~  303 (391)
                      ......+
T Consensus       307 d~~~~~V  313 (400)
T 3p5b_L          307 DIINEAI  313 (400)
T ss_dssp             ESSSCSE
T ss_pred             cCCCCeE
Confidence            7665443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.71  E-value=3.5e-15  Score=141.90  Aligned_cols=179  Identities=15%  Similarity=0.145  Sum_probs=121.1

Q ss_pred             cceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEe
Q 016318           60 SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (391)
Q Consensus        60 ~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d  139 (391)
                      ++.+.. .+..|++|+++++|+ +|++..+|+|++++.+..+.+.....                 .....+.|+||+++
T Consensus        21 ~~~va~-~l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~~~~~~~~v-----------------~~~g~~g~~gia~~   81 (354)
T 3a9g_A           21 ISEVAS-DLEVPWSIAPLGGGR-YLVTERPGRLVLISPSGKKLVASFDV-----------------ANVGEAGLLGLALH   81 (354)
T ss_dssp             EEEEEC-SCSCEEEEEEEETTE-EEEEETTTEEEEECSSCEEEEEECCC-----------------CCSTTCSEEEEEEC
T ss_pred             EEEEeC-CCCCCeEEEEcCCCe-EEEEeCCCEEEEEeCCCceEeeccce-----------------eecCCCceeeEEeC
Confidence            344433 478999999999998 88888889999997653244432210                 00113569999999


Q ss_pred             cC---CCcEEEEECC--------CCeEEEeCCCC-----eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchh
Q 016318          140 KK---TGDLYIADAY--------FGLMKVGPEGG-----LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRN  203 (391)
Q Consensus       140 ~~---~g~L~V~d~~--------~gl~~~d~~~g-----~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~  203 (391)
                      ++   ++.|||++..        ..|++++.+++     ..+.+...........+++|++++||+||+++......  .
T Consensus        82 pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~--~  159 (354)
T 3a9g_A           82 PEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADP--R  159 (354)
T ss_dssp             TTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCG--G
T ss_pred             CCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCC--c
Confidence            84   5899999874        45999988765     23333332222234578999999999999996331110  0


Q ss_pred             heeeecccCCCceEEEEeCCCC--------eEEEeccCCCCcceEEEcc-CCCEEEEEeCCCCe---EEEE
Q 016318          204 FMQLVFSAEDTGRVLKYDPTTK--------QTTVLLRNLQFPNGLSLSK-DKSFFVFCEGSVGR---LHKY  262 (391)
Q Consensus       204 ~~~~~~~~~~~g~l~~~d~~~~--------~~~~~~~~~~~~ngia~~~-d~~~l~v~et~~~~---I~~~  262 (391)
                      ...+  .....|+|+|+++++.        ..+++..++..|+|+++++ +++ ||++|...++   |.++
T Consensus       160 ~~~d--~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i  227 (354)
T 3a9g_A          160 LAQD--LSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGV-MVATEHGPVGHDEVNII  227 (354)
T ss_dssp             GGTC--TTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCC-EEEEECCSSSCCEEEEE
T ss_pred             cccC--CCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCC-EEEEecCCCCCcEEEEe
Confidence            0000  1233589999999764        3466777889999999999 566 9999987654   5554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.70  E-value=3.9e-15  Score=156.41  Aligned_cols=235  Identities=13%  Similarity=0.235  Sum_probs=164.8

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYI  147 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~V  147 (391)
                      -.+|+.|++|+ +|+|+.+++|.+++..  .+..+.......              ..........+++.|+ +|+ |||
T Consensus       359 V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~--------------~~~l~~~~v~~i~~d~-~g~~lWi  422 (795)
T 4a2l_A          359 VSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDES--------------ARGIGSNNIKAVYVDE-KKSLVYI  422 (795)
T ss_dssp             EEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC--------------------CCSCSCEEEEEEET-TTTEEEE
T ss_pred             eEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCc--------------ccCCCCccEEEEEEcC-CCCEEEE
Confidence            35788999998 9999999899999886  454442110000              0000124467888887 789 999


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      +....||+++|+++++++.+...........+..++.|++|+||+++.                   ++|++||+++++.
T Consensus       423 gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~  483 (795)
T 4a2l_A          423 GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------------SALVRFNPEQRSF  483 (795)
T ss_dssp             EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------------SCEEEEETTTTEE
T ss_pred             EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------------CceeEEeCCCCeE
Confidence            998889999999998887764322222234677889999999999984                   4799999999888


Q ss_pred             EEeccC-----C--CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec---ccCCC----CCceEeCCCCCE
Q 016318          228 TVLLRN-----L--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA---ILPGY----PDNVRTNEKGEF  293 (391)
Q Consensus       228 ~~~~~~-----~--~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~---~~~g~----p~~i~~d~~G~l  293 (391)
                      +.+...     +  ...+.++.+++|+ +|++..  +.|++++.++..   . .+.   ..++.    ...|..|++|++
T Consensus       484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~---~-~~~~~~~~~~l~~~~i~~i~~d~~g~l  556 (795)
T 4a2l_A          484 TTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE--EGLSVFKQEGLD---I-QKASILPVSNVTKLFTNCIYEASNGII  556 (795)
T ss_dssp             EECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES--SCEEEEEEETTE---E-EECCCSCSCGGGGSCEEEEEECTTSCE
T ss_pred             EEccccccccccCCceEEEEEECCCCC-EEEEeC--CceEEEeCCCCe---E-EEecCCCCCCCCCCeeEEEEECCCCCE
Confidence            776432     1  2456788898998 999854  689999865432   2 221   11122    345888999999


Q ss_pred             EEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEE-C
Q 016318          294 WVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEK-D  372 (391)
Q Consensus       294 wva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~-~  372 (391)
                      |+++..+                                        +.++|++.+.+..|...+|.....+.++.++ +
T Consensus       557 WigT~~G----------------------------------------l~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~  596 (795)
T 4a2l_A          557 WVGTREG----------------------------------------FYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSF  596 (795)
T ss_dssp             EEEESSC----------------------------------------EEEEETTTTEEEEECGGGTCSCSCEEEEEECTT
T ss_pred             EEEeCCC----------------------------------------ceeECCCCCcEEEeCCCCCCchhheEEEEECCC
Confidence            9998652                                        5667777777777776667665567777766 4


Q ss_pred             CEEEEecCCCCeEEEEe
Q 016318          373 GKLWMGSVLMPFVAVYD  389 (391)
Q Consensus       373 g~Lylgs~~~~~i~~~~  389 (391)
                      |+||+|+  ...|.+++
T Consensus       597 g~lWi~t--~~Gl~~~~  611 (795)
T 4a2l_A          597 GRLWLST--NRGISCFN  611 (795)
T ss_dssp             SCEEEEE--TTEEEEEE
T ss_pred             CCEEEEc--CCceEEEc
Confidence            8999998  35666664

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.70  E-value=1e-14  Score=136.59  Aligned_cols=147  Identities=15%  Similarity=0.219  Sum_probs=109.6

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCC----CeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchh
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEG----GLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRN  203 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~----g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~  203 (391)
                      ..+|.|+++|+++++||++|...+ |+++++++    ...+.+..    ..+..|.+|++|+ +|+||+++..       
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~----~~~~~p~glavd~~~~~ly~~d~~-------   97 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLAVDWIHSNIYWTDSV-------   97 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSCSCCCEEEEETTTTEEEEEETT-------
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----CCCCCcCEEEEeecCCeEEEEECC-------
Confidence            577999999976789999998755 99999886    22233221    1245789999996 6799999965       


Q ss_pred             heeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCC-CeEEEEEeccccCccceeecc-cCC
Q 016318          204 FMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFAI-LPG  280 (391)
Q Consensus       204 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~-~~I~~~~~~g~~~g~~~~~~~-~~g  280 (391)
                                .++|.+++++++..+++. ..+..|++|+++|++..||+++... ++|++++++|..   .+.+.. .-.
T Consensus        98 ----------~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~~~~~~~~~  164 (316)
T 1ijq_A           98 ----------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQ  164 (316)
T ss_dssp             ----------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCS
T ss_pred             ----------CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eEEEEECCCC
Confidence                      478999999877666655 4678999999999888899999875 799999988742   233322 224


Q ss_pred             CCCceEeCC-CCCEEEEEcCC
Q 016318          281 YPDNVRTNE-KGEFWVAIHCR  300 (391)
Q Consensus       281 ~p~~i~~d~-~G~lwva~~~~  300 (391)
                      .|.+|++|+ ++++|++....
T Consensus       165 ~P~gla~d~~~~~lY~~D~~~  185 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVDSKL  185 (316)
T ss_dssp             CEEEEEEETTTTEEEEEETTT
T ss_pred             CceEEEEeccCCEEEEEECCC
Confidence            799999996 56799988664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.70  E-value=1.1e-14  Score=148.13  Aligned_cols=193  Identities=18%  Similarity=0.194  Sum_probs=141.1

Q ss_pred             cccccCcceEEEcc-CCCeeEEEecCCEEEEEeCCce---eEEEeecCCCcccCCCCCCccccccccCccCccceEEEec
Q 016318           65 LNQIQGPESMAFDP-LGRGPYTGVADGRILFWDGLKW---TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (391)
Q Consensus        65 ~~~~~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~  140 (391)
                      ...+..|.+|++++ +|.++|++..+++|.+++.+..   ..+..                      .....|.||++|.
T Consensus        36 ~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~----------------------~~~~~P~GlAvD~   93 (619)
T 3s94_A           36 VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV----------------------SGLLSPDGLACDW   93 (619)
T ss_dssp             CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC----------------------SSCSCEEEEEEET
T ss_pred             EcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe----------------------CCCCCcCeEEEEe
Confidence            34577899999997 5566678888899999987621   11111                      1146799999998


Q ss_pred             CCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEE
Q 016318          141 KTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVL  218 (391)
Q Consensus       141 ~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~  218 (391)
                      .+++||++|...+ |.+++.++...+.+..    ..+..|++|++|+ +|.||+||.+.                .++|.
T Consensus        94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g~----------------~~~I~  153 (619)
T 3s94_A           94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWGE----------------VPKIE  153 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSCCCCEEEETTTTEEEEEECSS----------------SCEEE
T ss_pred             cCCEEEEEeCCCCEEEEEECCCCCEEEEEe----CCCCCCceEEEecCCCeEEEeccCC----------------CCEEE
Confidence            6788999998866 8999999876665542    2356899999998 58899999541                36899


Q ss_pred             EEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEE
Q 016318          219 KYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       219 ~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva  296 (391)
                      +.+.++...+++. ..+..|+||+++++++.|||+++..++|++++++|..   .+.+.. .-..|.+|+++++ ++|++
T Consensus       154 r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~gi~~~~~-~ly~t  229 (619)
T 3s94_A          154 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPHPFALTLFED-ILYWT  229 (619)
T ss_dssp             EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE---EC---------CCCEEESSS-EEEEE
T ss_pred             EEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc---cEEEEeCCCCCceEEEEeCC-EEEEe
Confidence            9998866555554 5788999999999888899999999999999988742   222322 2246999999876 78888


Q ss_pred             EcCCCch
Q 016318          297 IHCRRSL  303 (391)
Q Consensus       297 ~~~~~~~  303 (391)
                      ......+
T Consensus       230 d~~~~~V  236 (619)
T 3s94_A          230 DWSTHSI  236 (619)
T ss_dssp             CTTTCSE
T ss_pred             cCCCCEE
Confidence            7655443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.5e-15  Score=159.35  Aligned_cols=231  Identities=16%  Similarity=0.171  Sum_probs=163.1

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ..+|+.|++|+ +|+++.+++|.++++.  .+..+..  +.                 ........+++.|+ +|+|||+
T Consensus       365 v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~--~~-----------------~~~~~~v~~i~~d~-~g~lWig  423 (781)
T 3v9f_A          365 VSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKE--NR-----------------ELLSNSVLCSLKDS-EGNLWFG  423 (781)
T ss_dssp             EEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC------------------------CCCSBEEEEEECT-TSCEEEE
T ss_pred             eEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccC--CC-----------------CCCCcceEEEEECC-CCCEEEE
Confidence            45788998998 9999988889999987  2322210  00                 00134567888887 7999999


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ....||+++++++++++.+...  +.....+..++.|++|+||+++.                   ++|++||+++++.+
T Consensus       424 t~~~Gl~~~~~~~~~~~~~~~~--~~~~~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~  482 (781)
T 3v9f_A          424 TYLGNISYYNTRLKKFQIIELE--KNELLDVRVFYEDKNKKIWIGTH-------------------AGVFVIDLASKKVI  482 (781)
T ss_dssp             ETTEEEEEECSSSCEEEECCST--TTCCCCEEEEEECTTSEEEEEET-------------------TEEEEEESSSSSCC
T ss_pred             eccCCEEEEcCCCCcEEEeccC--CCCCCeEEEEEECCCCCEEEEEC-------------------CceEEEeCCCCeEE
Confidence            8778999999999888776432  22234677889999999999984                   47999999988776


Q ss_pred             EeccC------CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC----CceEeCCCCCEEEEEc
Q 016318          229 VLLRN------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP----DNVRTNEKGEFWVAIH  298 (391)
Q Consensus       229 ~~~~~------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p----~~i~~d~~G~lwva~~  298 (391)
                      .+...      ....+.++.+++|+ ||++. ..+.|.+++.++   ++.+.+....++|    ..|..|++|++|+++.
T Consensus       483 ~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt-~~~Gl~~~~~~~---~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~  557 (781)
T 3v9f_A          483 HHYDTSNSQLLENFVRSIAQDSEGR-FWIGT-FGGGVGIYTPDM---QLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG  557 (781)
T ss_dssp             EEECTTTSSCSCSCEEEEEECTTCC-EEEEE-SSSCEEEECTTC---CEEEEECTTTTCSCSCEEEEEECTTSCEEEEET
T ss_pred             ecccCcccccccceeEEEEEcCCCC-EEEEE-cCCCEEEEeCCC---CeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence            55321      13566888999998 99984 445799987543   3344443323444    3578899999999986


Q ss_pred             CCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEE-CCEEEE
Q 016318          299 CRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEK-DGKLWM  377 (391)
Q Consensus       299 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~-~g~Lyl  377 (391)
                      .                                       +.+.++|++.+.+..|...+|.....+.++.++ +|+||+
T Consensus       558 ~---------------------------------------Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~  598 (781)
T 3v9f_A          558 E---------------------------------------GLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWA  598 (781)
T ss_dssp             T---------------------------------------EEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEE
T ss_pred             C---------------------------------------CceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEE
Confidence            4                                       334677877666777766667665566677665 489999


Q ss_pred             ecCCCCeEEEEe
Q 016318          378 GSVLMPFVAVYD  389 (391)
Q Consensus       378 gs~~~~~i~~~~  389 (391)
                      |+.  ..|.+++
T Consensus       599 ~t~--~Gl~~~~  608 (781)
T 3v9f_A          599 STN--TGISCYI  608 (781)
T ss_dssp             ECS--SCEEEEE
T ss_pred             EcC--CceEEEE
Confidence            984  3466654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.69  E-value=1.6e-15  Score=139.03  Aligned_cols=185  Identities=14%  Similarity=0.245  Sum_probs=133.8

Q ss_pred             cccCcceEEE-ccCCCeeEEEec--CCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           67 QIQGPESMAF-DPLGRGPYTGVA--DGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        67 ~~~gPe~i~~-d~~G~~ly~~~~--~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      .+..|.++++ +++|+ +|++..  +++|.+++.+ ...  .....                   .....|.++++++ +
T Consensus        75 ~~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~~d~~g~~~--~~~~~-------------------~~~~~~~~i~~~~-~  131 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGD-IIVTERSPTHQIQIYNQYGQFV--RKFGA-------------------TILQHPRGVTVDN-K  131 (286)
T ss_dssp             CBSSEEEEEEETTTTE-EEEEECGGGCEEEEECTTSCEE--EEECT-------------------TTCSCEEEEEECT-T
T ss_pred             cccCceEEEEEcCCCe-EEEEcCCCCCEEEEECCCCcEE--EEecC-------------------ccCCCceEEEEeC-C
Confidence            4568999999 57787 666663  7899999865 221  11100                   1135689999998 7


Q ss_pred             CcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          143 GDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       143 g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      |+|||++...+ |+++++++..+..+...   ..+..|++|+++++|++|++++.                 +++|.+||
T Consensus       132 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~  191 (286)
T 1q7f_A          132 GRIIVVECKVMRVIIFDQNGNVLHKFGCS---KHLEFPNGVVVNDKQEIFISDNR-----------------AHCVKVFN  191 (286)
T ss_dssp             SCEEEEETTTTEEEEECTTSCEEEEEECT---TTCSSEEEEEECSSSEEEEEEGG-----------------GTEEEEEE
T ss_pred             CCEEEEECCCCEEEEEcCCCCEEEEeCCC---CccCCcEEEEECCCCCEEEEECC-----------------CCEEEEEc
Confidence            89999998754 99999886655544321   23457999999999999999854                 47899999


Q ss_pred             CCCCeEEEeccC--CCCcceEEEccCCCEEEEEeCCCC-eEEEEEeccccCccceeecc-cC-CCCCceEeCCCCCEEEE
Q 016318          222 PTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSVG-RLHKYWLIGEKAGNLEAFAI-LP-GYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       222 ~~~~~~~~~~~~--~~~~ngia~~~d~~~l~v~et~~~-~I~~~~~~g~~~g~~~~~~~-~~-g~p~~i~~d~~G~lwva  296 (391)
                      ++++....+...  +..|.+|+++++|+ +|+++..++ +|.+++.+|.   ....+.. .. ..|.+++++++|++|++
T Consensus       192 ~~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          192 YEGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQ---LISALESKVKHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             TTCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSC---EEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             CCCCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCC---EEEEEcccCCCCcceeEEECCCCcEEEE
Confidence            876666555432  46899999999998 999988776 9999986542   1222322 11 24778999999999999


Q ss_pred             Ec
Q 016318          297 IH  298 (391)
Q Consensus       297 ~~  298 (391)
                      ..
T Consensus       268 ~~  269 (286)
T 1q7f_A          268 SK  269 (286)
T ss_dssp             ET
T ss_pred             CC
Confidence            53

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.68  E-value=5.6e-15  Score=143.35  Aligned_cols=193  Identities=18%  Similarity=0.257  Sum_probs=137.0

Q ss_pred             ccCcceEEEccCCCeeEEEecCC--EEEEEeCC-cee--EEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           68 IQGPESMAFDPLGRGPYTGVADG--RILFWDGL-KWT--DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~~g--~I~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      ...|. ++++++|+.+|++..++  +|++++.. .+.  .+...                   ......+|.++++++++
T Consensus       171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~-------------------~~~~~~~p~~iav~p~~  230 (409)
T 3hrp_A          171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQL-------------------GSTFSGKIGAVALDETE  230 (409)
T ss_dssp             CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC-------------------CTTSCSCCCBCEECTTS
T ss_pred             CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeec-------------------cchhcCCcEEEEEeCCC
Confidence            45677 99999999888887755  89999876 322  22110                   01125779999999867


Q ss_pred             CcEEEEECCCCeEEEeCCCCeeEEceec-cCCCcccCCc-ceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          143 GDLYIADAYFGLMKVGPEGGLATSLATE-AEGVPLRFTN-DLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       143 g~L~V~d~~~gl~~~d~~~g~~~~~~~~-~~~~~~~~~~-~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      ++||+++....|+++|++++..+.+... ..+.....|. ++++++ +|+||++++.                 +++|++
T Consensus       231 g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------------~~~I~~  293 (409)
T 3hrp_A          231 EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------------LSSVYK  293 (409)
T ss_dssp             SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------------TTEEEE
T ss_pred             CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----------------CCEEEE
Confidence            8999987644599999998876555221 1111112345 999999 6899999965                 578999


Q ss_pred             EeCCCCeEEEec-cC--------------CCCcceEEEccCCCEEEEEeC-CCCeEEEEEeccccCccceeeccc-----
Q 016318          220 YDPTTKQTTVLL-RN--------------LQFPNGLSLSKDKSFFVFCEG-SVGRLHKYWLIGEKAGNLEAFAIL-----  278 (391)
Q Consensus       220 ~d~~~~~~~~~~-~~--------------~~~~ngia~~~d~~~l~v~et-~~~~I~~~~~~g~~~g~~~~~~~~-----  278 (391)
                      +++++. ...+. ..              +..|+||+++++|+ |||+++ .+++|+++++..   +....+...     
T Consensus       294 ~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~---G~v~~~~g~~~~~g  368 (409)
T 3hrp_A          294 ITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILD---GYVSTVAGQVDVAS  368 (409)
T ss_dssp             ECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTT---TEEEEEEECTTCBS
T ss_pred             EecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCC---CEEEEEeCCCCCCC
Confidence            998754 43332 22              56799999999999 999999 999999998432   222222211     


Q ss_pred             ----------CCCCCceEeCCCCCEEEEEcCCCc
Q 016318          279 ----------PGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       279 ----------~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                                -..|.+|++|++|++||+....++
T Consensus       369 ~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~  402 (409)
T 3hrp_A          369 QIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA  402 (409)
T ss_dssp             CCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred             cCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence                      135899999999999999887644

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=2.1e-15  Score=141.82  Aligned_cols=207  Identities=14%  Similarity=0.185  Sum_probs=138.4

Q ss_pred             cccccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      .+.+..|.+|++|++|++++++..+++|.+++.+ ....+.......  . .  +      ........|.+++++++++
T Consensus        87 ~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~--~-~--g------~~~~~~~~P~~ia~~~~~g  155 (329)
T 3fvz_A           87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM--Q-P--G------SDQNHFCQPTDVAVEPSTG  155 (329)
T ss_dssp             TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTT--B-C--C------CSTTCCSSEEEEEECTTTC
T ss_pred             CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccC--C-C--C------CCccccCCCcEEEEeCCCC
Confidence            3567799999999999966666778999999887 311111111000  0 0  0      0012256799999997579


Q ss_pred             cEEEEEC-C-CCeEEEeCCCCeeEEceeccCC-----CcccCCcceeecCC-CCEEEEeCCCcccchhheeeecccCCCc
Q 016318          144 DLYIADA-Y-FGLMKVGPEGGLATSLATEAEG-----VPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       144 ~L~V~d~-~-~gl~~~d~~~g~~~~~~~~~~~-----~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      +|||+|. . ..|.++++++..+..+.....+     ..+..|++|+++++ |++|+++..                 ++
T Consensus       156 ~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-----------------~~  218 (329)
T 3fvz_A          156 AVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-----------------NG  218 (329)
T ss_dssp             CEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----------------TT
T ss_pred             eEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----------------CC
Confidence            9999996 3 4499999876665555432221     34678999999998 899999965                 57


Q ss_pred             eEEEEeCCCCeEEEecc---CCCCcceEEEcc------CCCEEEEEeCCCCeEEEEEeccccCccceeec---ccCCCCC
Q 016318          216 RVLKYDPTTKQTTVLLR---NLQFPNGLSLSK------DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA---ILPGYPD  283 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~~---~~~~~ngia~~~------d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~---~~~g~p~  283 (391)
                      +|.+|++++++......   ....+.+++++|      +++ +|+++....+|++++....  .....+.   .....|.
T Consensus       219 ~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g--~~~~~~~~~~~~~~~p~  295 (329)
T 3fvz_A          219 RIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSG--EIIDVFKPVRKHFDMPH  295 (329)
T ss_dssp             EEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTTC--CEEEEECCSSSCCSSEE
T ss_pred             EEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCC--eEEEEEcCCCCccCCee
Confidence            99999998666544321   122445555555      776 7777777778999985432  1122222   1123689


Q ss_pred             ceEeCCCCCEEEEEcCCCc
Q 016318          284 NVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       284 ~i~~d~~G~lwva~~~~~~  302 (391)
                      +|++|++|++||+......
T Consensus       296 ~ia~~~dG~lyvad~~~~~  314 (329)
T 3fvz_A          296 DIVASEDGTVYIGDAHTNT  314 (329)
T ss_dssp             EEEECTTSEEEEEESSSCC
T ss_pred             EEEECCCCCEEEEECCCCE
Confidence            9999999999999877544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.67  E-value=2.1e-14  Score=138.84  Aligned_cols=147  Identities=15%  Similarity=0.210  Sum_probs=110.6

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCCC----eeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchh
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGG----LATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRN  203 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g----~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~  203 (391)
                      ...|.+|++|..++.||++|...+ |+++++++.    ..+.+..    ..+..|.+|++|. .++||++|+.       
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~----~~~~~p~glavD~~~~~lY~~d~~-------  179 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLAVDWIHSNIYWTDSV-------  179 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC----SSCSCEEEEEEETTTTEEEEEETT-------
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe----CCCCCcccEEEEecCCceEEEECC-------
Confidence            567999999976789999998765 999998763    2233221    1345799999997 7899999965       


Q ss_pred             heeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCC-CCeEEEEEeccccCccceeec-ccCC
Q 016318          204 FMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIGEKAGNLEAFA-ILPG  280 (391)
Q Consensus       204 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~g~~~g~~~~~~-~~~g  280 (391)
                                +++|.+++++++..+++. ..+..|++|+++|.+.+||+++.. ..+|++++++|..   ...+. ..-.
T Consensus       180 ----------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~~~~~~~l~  246 (400)
T 3p5b_L          180 ----------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQ  246 (400)
T ss_dssp             ----------TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CEEEECSSCS
T ss_pred             ----------CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cEEEEECCCC
Confidence                      478999999877766665 477889999999988889999976 4799999988742   22332 2224


Q ss_pred             CCCceEeCC-CCCEEEEEcCC
Q 016318          281 YPDNVRTNE-KGEFWVAIHCR  300 (391)
Q Consensus       281 ~p~~i~~d~-~G~lwva~~~~  300 (391)
                      .|.+|++|+ ++++|++....
T Consensus       247 ~P~glavd~~~~~lY~aD~~~  267 (400)
T 3p5b_L          247 WPNGITLDLLSGRLYWVDSKL  267 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEEEeCCCEEEEEECCC
Confidence            799999995 56799987664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.67  E-value=9.4e-15  Score=148.78  Aligned_cols=192  Identities=17%  Similarity=0.122  Sum_probs=144.5

Q ss_pred             cccCcceEEEcc-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           67 QIQGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        67 ~~~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      .+..|.+|++|+ +|+++|++...++|.+++.+  ..+.+..                      ...+.|.||++|..++
T Consensus       347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~----------------------~~~~~p~GlAvD~~~~  404 (619)
T 3s94_A          347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT----------------------AQIAHPDGIAVDWVAR  404 (619)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------------SSCSCCCEEEEETTTT
T ss_pred             ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE----------------------CCCCCcCceEEecccC
Confidence            467789999997 56667778888999999887  2232221                      1247899999996578


Q ss_pred             cEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          144 DLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       144 ~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      +||++|...+ |.+++.++...+.+..    ..+..|++|++|+ +|.||++|.+.                .++|.+.+
T Consensus       405 ~lY~tD~~~~~I~v~~~~G~~~~~l~~----~~l~~P~~iavdp~~G~ly~tD~g~----------------~~~I~r~~  464 (619)
T 3s94_A          405 NLYWTDTGTDRIEVTRLNGTMRKILIS----EDLEEPRAIVLDPMVGYMYWTDWGE----------------IPKIERAA  464 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEEC----TTCCSEEEEEEETTTTEEEEEECSS----------------SCEEEEEE
T ss_pred             cEEEEeCCCCcEEEEeCCCCeEEEEEE----CCCCCeeeEEEEcCCCcEEEecCCC----------------CCEEEEEc
Confidence            9999998866 8888888776555542    2367899999998 59999999651                36899998


Q ss_pred             CCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318          222 PTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       222 ~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      .++...+++. ..+..||||+++++++.|||+++..++|.+++++|..  ...++......|.+|+++.+ ++|++....
T Consensus       465 ~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~--~~~~~~~~l~~P~glav~~~-~ly~tD~~~  541 (619)
T 3s94_A          465 LDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG--RRVLVEDKIPHIFGFTLLGD-YVYWTDWQR  541 (619)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEEECCCCSSCCEEEETT-EEEEECTTS
T ss_pred             cCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc--eEEEeccCCCCcEEEEEECC-EEEEeecCC
Confidence            8765555554 4688999999999888899999999999999998742  22222222347999999865 899998776


Q ss_pred             Cch
Q 016318          301 RSL  303 (391)
Q Consensus       301 ~~~  303 (391)
                      +.+
T Consensus       542 ~~I  544 (619)
T 3s94_A          542 RSI  544 (619)
T ss_dssp             SCE
T ss_pred             CeE
Confidence            554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.67  E-value=9.7e-15  Score=153.37  Aligned_cols=224  Identities=13%  Similarity=0.223  Sum_probs=156.8

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .+++.|++|+.+|+++.+++|.++++.  .+..+....+                .  .......++..|+ +|+|||+.
T Consensus       409 ~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~----------------~--l~~~~v~~i~~d~-~g~lwigt  469 (795)
T 4a2l_A          409 KAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS----------------Q--LVNENVYAILPDG-EGNLWLGT  469 (795)
T ss_dssp             EEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS----------------C--CSCSCEEEEEECS-SSCEEEEE
T ss_pred             EEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC----------------C--cCCCeeEEEEECC-CCCEEEEe
Confidence            478888888768999998899999987  4444421100                0  1134567888887 89999998


Q ss_pred             CCCCeEEEeCCCCeeEEceecc--CCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          150 AYFGLMKVGPEGGLATSLATEA--EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~--~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      . .||+++++++++++.+....  .+.....+..+..|++|++|+++.                   ++|++||+++++.
T Consensus       470 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------------------~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          470 L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------------------EGLSVFKQEGLDI  529 (795)
T ss_dssp             S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------------------SCEEEEEEETTEE
T ss_pred             c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-------------------CceEEEeCCCCeE
Confidence            7 89999999998887764321  111224567889999999999983                   4799999988877


Q ss_pred             EEecc-----CC--CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCc----eEeCCCCCEEEE
Q 016318          228 TVLLR-----NL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN----VRTNEKGEFWVA  296 (391)
Q Consensus       228 ~~~~~-----~~--~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~----i~~d~~G~lwva  296 (391)
                       .+..     .+  ...++|+.+++|+ +|++.. + .|.+++.+.   ++.+.+....|+|++    |..|++|++|++
T Consensus       530 -~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~-~-Gl~~~d~~~---~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~  602 (795)
T 4a2l_A          530 -QKASILPVSNVTKLFTNCIYEASNGI-IWVGTR-E-GFYCFNEKD---KQIKRYNTTNGLPNNVVYGILEDSFGRLWLS  602 (795)
T ss_dssp             -EECCCSCSCGGGGSCEEEEEECTTSC-EEEEES-S-CEEEEETTT---TEEEEECGGGTCSCSCEEEEEECTTSCEEEE
T ss_pred             -EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeC-C-CceeECCCC---CcEEEeCCCCCCchhheEEEEECCCCCEEEE
Confidence             4321     11  2345788888998 999843 3 899998543   445555444455654    788999999999


Q ss_pred             EcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeece--eEE-EEECC
Q 016318          297 IHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAI--SEV-EEKDG  373 (391)
Q Consensus       297 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~i--s~~-~~~~g  373 (391)
                      +..+                                        +.+++++.+.+..|...+|.....+  .++ ...+|
T Consensus       603 t~~G----------------------------------------l~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G  642 (795)
T 4a2l_A          603 TNRG----------------------------------------ISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVG  642 (795)
T ss_dssp             ETTE----------------------------------------EEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTS
T ss_pred             cCCc----------------------------------------eEEEcCCCCcEEEcCCcCCCccccCccCceeECCCC
Confidence            8542                                        6678888777888877677544333  233 34468


Q ss_pred             EEEEecCC
Q 016318          374 KLWMGSVL  381 (391)
Q Consensus       374 ~Lylgs~~  381 (391)
                      +||+|+..
T Consensus       643 ~l~~g~~~  650 (795)
T 4a2l_A          643 QMYFGGIN  650 (795)
T ss_dssp             CEEEEETT
T ss_pred             eEEEecCC
Confidence            99999865

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=2.4e-14  Score=150.15  Aligned_cols=231  Identities=14%  Similarity=0.200  Sum_probs=158.9

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ..+|+.|++|+ +|+|+.+++|.+++..  .+..+........             ..........+++.|+ +|+|||+
T Consensus       315 v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~v~~i~~d~-~g~lWig  379 (781)
T 3v9f_A          315 ARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMN-------------ESSLSNKVVSSVCDDG-QGKLWIG  379 (781)
T ss_dssp             EEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCC-------------SSCCSSSCEEEEEECT-TSCEEEE
T ss_pred             EEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccc-------------cCCCCCcceEEEEEcC-CCCEEEE
Confidence            35789999998 9999998899999876  4444432110000             0000124467888887 7999999


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ....||++++++++.++.+... .......+.+++.|++|+||+++..                  ++|++||+++++.+
T Consensus       380 t~~~Gl~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d~~g~lWigt~~------------------~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          380 TDGGGINVFENGKRVAIYNKEN-RELLSNSVLCSLKDSEGNLWFGTYL------------------GNISYYNTRLKKFQ  440 (781)
T ss_dssp             EBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSCEEEEETT------------------EEEEEECSSSCEEE
T ss_pred             eCCCcEEEEECCCCeEEEccCC-CCCCCcceEEEEECCCCCEEEEecc------------------CCEEEEcCCCCcEE
Confidence            8888999999987766655211 1222345778889999999999853                  68999999998887


Q ss_pred             EeccC---CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC------CCCCceEeCCCCCEEEEEcC
Q 016318          229 VLLRN---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP------GYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       229 ~~~~~---~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~------g~p~~i~~d~~G~lwva~~~  299 (391)
                      .+...   ......++.+++++ ||++..  ..|++++.+.   ++...+...+      ..+..|..|++|++|+++..
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~-lwigt~--~Gl~~~~~~~---~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~  514 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKK-IWIGTH--AGVFVIDLAS---KKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG  514 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSE-EEEEET--TEEEEEESSS---SSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS
T ss_pred             EeccCCCCCCeEEEEEECCCCC-EEEEEC--CceEEEeCCC---CeEEecccCcccccccceeEEEEEcCCCCEEEEEcC
Confidence            76532   23456788888887 999854  6899998654   2333332211      23456889999999999864


Q ss_pred             CCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEE-CCEEEEe
Q 016318          300 RRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEK-DGKLWMG  378 (391)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~-~g~Lylg  378 (391)
                      .                                       .+.+++++++.+..+...++.....+..+.++ +|+||+|
T Consensus       515 ~---------------------------------------Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~  555 (781)
T 3v9f_A          515 G---------------------------------------GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA  555 (781)
T ss_dssp             S---------------------------------------CEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred             C---------------------------------------CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE
Confidence            2                                       26668888777777766566555566777765 4899999


Q ss_pred             cC
Q 016318          379 SV  380 (391)
Q Consensus       379 s~  380 (391)
                      +.
T Consensus       556 T~  557 (781)
T 3v9f_A          556 TG  557 (781)
T ss_dssp             ET
T ss_pred             EC
Confidence            86

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.66  E-value=7.1e-15  Score=139.71  Aligned_cols=210  Identities=18%  Similarity=0.195  Sum_probs=134.5

Q ss_pred             cccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC---CC
Q 016318           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK---TG  143 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~---~g  143 (391)
                      .+..|++|+++++|+ +|++...|+|.+++....+.+.....                 .....+.|+||+++++   ++
T Consensus        29 ~l~~P~~ia~~pdG~-l~V~e~~g~I~~i~~g~~~~~~~~~v-----------------~~~g~~~p~gia~~pdf~~~g   90 (352)
T 2ism_A           29 GLEVPWALAFLPDGG-MLIAERPGRIRLFREGRLSTYAELSV-----------------YHRGESGLLGLALHPRFPQEP   90 (352)
T ss_dssp             CCSCEEEEEECTTSC-EEEEETTTEEEEEETTEEEEEEECCC-----------------CCSTTCSEEEEEECTTTTTSC
T ss_pred             CCCCceEEEEcCCCe-EEEEeCCCeEEEEECCCccEeecceE-----------------eecCCCCceeEEECCCCCCCC
Confidence            377999999999999 88888889999998334344432210                 0112467999999984   47


Q ss_pred             cEEEEECC------CCeEEEeCCCCee---EEceeccC--CCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccC
Q 016318          144 DLYIADAY------FGLMKVGPEGGLA---TSLATEAE--GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       144 ~L~V~d~~------~gl~~~d~~~g~~---~~~~~~~~--~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      .|||++..      ..|.+++.+++.+   +.+.....  ......+++|++++||+||+++......  ....+  ...
T Consensus        91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~--~~~~d--~~~  166 (352)
T 2ism_A           91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYER--ELAQD--LAS  166 (352)
T ss_dssp             EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCG--GGGGC--TTC
T ss_pred             EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCC--ccccC--CCC
Confidence            99999874      4599998876532   33333222  2234578999999999999997432110  00000  113


Q ss_pred             CCceEEEEeCCC-------------CeEEEeccCCCCcceEEEcc-CCCEEEEEeCCCCe--------EEEEEeccccCc
Q 016318          213 DTGRVLKYDPTT-------------KQTTVLLRNLQFPNGLSLSK-DKSFFVFCEGSVGR--------LHKYWLIGEKAG  270 (391)
Q Consensus       213 ~~g~l~~~d~~~-------------~~~~~~~~~~~~~ngia~~~-d~~~l~v~et~~~~--------I~~~~~~g~~~g  270 (391)
                      ..|+|+++++++             ...+++..++..|+|+++++ +++ ||++|...++        |.++. .|..-|
T Consensus       167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i~-~G~nyG  244 (352)
T 2ism_A          167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLIV-PGGNYG  244 (352)
T ss_dssp             SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCC-EEEEEECC------CCCEEEEEC-TTCBCC
T ss_pred             CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEec-cCCcCC
Confidence            358999999875             24456667788899999999 555 9999987766        55543 222111


Q ss_pred             c------------ceeecccC--CCCCceEeCCCCCEEEEEcCCC
Q 016318          271 N------------LEAFAILP--GYPDNVRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       271 ~------------~~~~~~~~--g~p~~i~~d~~G~lwva~~~~~  301 (391)
                      -            .......+  ..|.++++ .+|++|++.....
T Consensus       245 wp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~  288 (352)
T 2ism_A          245 WPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQ  288 (352)
T ss_dssp             TTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTT
T ss_pred             CCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCC
Confidence            0            01111111  24778888 5788999876543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.63  E-value=4.7e-14  Score=146.79  Aligned_cols=147  Identities=15%  Similarity=0.205  Sum_probs=110.9

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCCCe----eEEceeccCCCcccCCcceeecCC-CCEEEEeCCCcccchh
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGL----ATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRN  203 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~----~~~~~~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~  203 (391)
                      ...|.+|+++..+++||++|...+ |++++.++..    .+.+.    ...+..|.+||+|.. ++||++|+.       
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi----~~~l~~P~GLAvD~~~~~LY~tD~~-------  491 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYWTDSV-------  491 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE----CSSCSCCCEEEEETTTTEEEEEETT-------
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE----ecCCCCcceeeeeecCCcEEEEecC-------
Confidence            567899999986789999999866 9999987632    22222    123568999999975 489999965       


Q ss_pred             heeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCC-CeEEEEEeccccCccceeec-ccCC
Q 016318          204 FMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFA-ILPG  280 (391)
Q Consensus       204 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~-~~I~~~~~~g~~~g~~~~~~-~~~g  280 (391)
                                +++|.+++.+++..+++. ..+..|+||+++|.+..|||++... .+|++++++|..   ..++. ..-.
T Consensus       492 ----------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~---~~~lv~~~l~  558 (791)
T 3m0c_C          492 ----------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQ  558 (791)
T ss_dssp             ----------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCS
T ss_pred             ----------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc---eEEEEeCCCC
Confidence                      579999999877766665 5678899999999887899999876 899999988742   23333 2224


Q ss_pred             CCCceEeC-CCCCEEEEEcCC
Q 016318          281 YPDNVRTN-EKGEFWVAIHCR  300 (391)
Q Consensus       281 ~p~~i~~d-~~G~lwva~~~~  300 (391)
                      .|.+|++| .+|+||++....
T Consensus       559 ~P~GLavD~~~~~LYwaD~~~  579 (791)
T 3m0c_C          559 WPNGITLDLLSGRLYWVDSKL  579 (791)
T ss_dssp             CEEEEEEETTTTEEEEEETTT
T ss_pred             CceEEEEecCCCeEEEEeCCC
Confidence            79999999 567799997654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.63  E-value=1e-13  Score=129.81  Aligned_cols=148  Identities=16%  Similarity=0.179  Sum_probs=111.6

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCCCee-EEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhhee
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~  206 (391)
                      ...|.++.+|..+++||++|...+ |++++++++.. +.+..    ..+..|.++++|. .|+||++|+.          
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~----~~l~~p~glavd~~~g~ly~~d~~----------   99 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV----SGLLSPDGLACDWLGEKLYWTDSE----------   99 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE----ECCSCCCEEEEETTTTEEEEEETT----------
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc----CCCCCccEEEEEcCCCeEEEEECC----------
Confidence            356889999976789999998765 99999987632 22211    1245799999996 7899999965          


Q ss_pred             eecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCC-CCeEEEEEeccccCccceeec-ccCCCCC
Q 016318          207 LVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIGEKAGNLEAFA-ILPGYPD  283 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~g~~~g~~~~~~-~~~g~p~  283 (391)
                             .++|.++++++...+++. ..+..|+||+++|.+..||+++.. ..+|+|++++|..   .+.+. ..-..|+
T Consensus       100 -------~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~l~~Pn  169 (318)
T 3sov_A          100 -------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINSEIYWPN  169 (318)
T ss_dssp             -------TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEE
T ss_pred             -------CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEECCCCCcc
Confidence                   478999998876655554 678899999999987789999975 6899999988742   22332 2124699


Q ss_pred             ceEeCC-CCCEEEEEcCCC
Q 016318          284 NVRTNE-KGEFWVAIHCRR  301 (391)
Q Consensus       284 ~i~~d~-~G~lwva~~~~~  301 (391)
                      +|++|+ ++++|++.....
T Consensus       170 glavd~~~~~lY~aD~~~~  188 (318)
T 3sov_A          170 GLTLDYEEQKLYWADAKLN  188 (318)
T ss_dssp             EEEEETTTTEEEEEETTTT
T ss_pred             EEEEeccCCEEEEEECCCC
Confidence            999997 667999986643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.63  E-value=4.7e-14  Score=146.81  Aligned_cols=194  Identities=15%  Similarity=0.157  Sum_probs=141.7

Q ss_pred             cccCcceEEEcc-CCCeeEEEecCCEEEEEeCCcee---EEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           67 QIQGPESMAFDP-LGRGPYTGVADGRILFWDGLKWT---DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        67 ~~~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      .+..|.+|++|. +++++|++..+++|++++.+...   ....                   ........|.||++|..+
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~-------------------vi~~~l~~P~GLAvD~~~  482 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-------------------VISRDIQAPDGLAVDWIH  482 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE-------------------EECSSCSCCCEEEEETTT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE-------------------EEecCCCCcceeeeeecC
Confidence            367899999997 56677788888999999776210   0000                   111125789999999756


Q ss_pred             CcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          143 GDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       143 g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      ++||++|...+ |.+++.++...+.+...    .+..|++|++|+. |.||++|.+.                .++|.+.
T Consensus       483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~~----~l~~P~gIaVDp~~g~LYwtD~g~----------------~~~I~~~  542 (791)
T 3m0c_C          483 SNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKG  542 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEE
T ss_pred             CcEEEEecCCCeEEEEeCCCCeEEEEEeC----CCCCcceEEEecCCCCEEEecCCC----------------CCeEEEE
Confidence            79999999866 99999998776666432    2457999999984 8999999651                2689999


Q ss_pred             eCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc---CCCCCceEeCCCCCEEEE
Q 016318          221 DPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL---PGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       221 d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~---~g~p~~i~~d~~G~lwva  296 (391)
                      +.++...+++. ..+..|+||++++.+..|||+++..++|++++++|..   ...+...   -..|.+|+++. ++||++
T Consensus       543 ~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~---~~~v~~~~~~l~~P~glav~~-~~lYwt  618 (791)
T 3m0c_C          543 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWT  618 (791)
T ss_dssp             ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEET-TEEEEE
T ss_pred             ecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc---eEEEecCCCccCCCCEEEEeC-CEEEEE
Confidence            98876666554 5678999999998888899999999999999998742   2333221   12467788854 478888


Q ss_pred             EcCCCch
Q 016318          297 IHCRRSL  303 (391)
Q Consensus       297 ~~~~~~~  303 (391)
                      ....+.+
T Consensus       619 D~~~~~I  625 (791)
T 3m0c_C          619 DIINEAI  625 (791)
T ss_dssp             ETTTTEE
T ss_pred             ECCCCEE
Confidence            8766554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.62  E-value=2.3e-15  Score=155.49  Aligned_cols=213  Identities=15%  Similarity=0.130  Sum_probs=143.9

Q ss_pred             cccCcceEEEccC-CCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           67 QIQGPESMAFDPL-GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        67 ~~~gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      .+..|++|+++++ +.++|+...+++|++++.+....    ......            ........|.||++|..+++|
T Consensus       404 ~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~----~~~~~~------------~i~~~~~~P~glavD~~~g~L  467 (699)
T 1n7d_A          404 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG----VSSYDT------------VISRDIQAPDGLAVDWIHSNI  467 (699)
T ss_dssp             CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-----CCCCC------------BCCSCC--CCCEECCCSSSBC
T ss_pred             cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCC----CcceEE------------EEeCCCCCcceEEEEeeCCcE
Confidence            4678999999975 45556667778999997652100    000000            111124679999999557899


Q ss_pred             EEEECCC-CeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          146 YIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       146 ~V~d~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      |++|... .|.++++++..++.+...    .+..|++|++|+ .|.||+++.+.                .++|.+++.+
T Consensus       468 Y~tD~~~~~I~v~d~dg~~~~~l~~~----~~~~P~giavDp~~g~ly~td~~~----------------~~~I~~~~~d  527 (699)
T 1n7d_A          468 YWTDSVLGTVSVADTKGVKRKTLFRE----QGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLN  527 (699)
T ss_dssp             EECCTTTSCEEEEBSSSCCEEEECCC----SSCCCCCEECCSSSSCCEECCCSS----------------SCCEEBCCSS
T ss_pred             EEEeccCCeEEEEecCCCceEEEEeC----CCCCcceEEEccCCCcEEEcccCC----------------CCeEEEEeCC
Confidence            9999875 499999998766655321    245799999998 57999998541                3688888876


Q ss_pred             CCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc---cCCCCCceEeCCCCCEEEEEcC
Q 016318          224 TKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       224 ~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~---~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      +...+++. ..+..||||+++++++.|||+++..++|++++++|.   ..+++..   ..+.|.+|+++.+ ++|++...
T Consensus       528 G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~~~P~glavd~~-~lywtd~~  603 (699)
T 1n7d_A          528 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFED-KVFWTDII  603 (699)
T ss_dssp             SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS---CCEEECCCSSSCSSCCCCEEETT-EEEEECST
T ss_pred             CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC---ceEEEEecCCcCCCceEeEEECC-EEEEEeCC
Confidence            55544443 567899999999988889999999999999998873   2333332   1247999999876 56666665


Q ss_pred             CCchhhhhhhcCccceeeeeecCc
Q 016318          300 RRSLYSHLMALYPKIRHFLLKLPI  323 (391)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~~~~l~~  323 (391)
                      ...+..    ..+..++.+..+..
T Consensus       604 ~~~V~~----~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          604 NEAIFS----ANRLTGSDVNLLAE  623 (699)
T ss_dssp             TTCEEE----EETTTEEEEECCCT
T ss_pred             CCeEEE----EEccCCCceEEeec
Confidence            544322    12334555555544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.61  E-value=2.7e-14  Score=133.71  Aligned_cols=185  Identities=16%  Similarity=0.202  Sum_probs=129.1

Q ss_pred             cCcceEEEcc-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           69 QGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        69 ~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      ..|.+|++++ +|+ +|++...++|++++.+  .++.+.....                  .....+|.++++++++|+|
T Consensus        80 ~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~------------------~~~~~~p~~i~~d~~~G~l  140 (322)
T 2fp8_A           80 GRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVD------------------GVPFKWLYAVTVDQRTGIV  140 (322)
T ss_dssp             CCEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEET------------------TEECSCEEEEEECTTTCCE
T ss_pred             CCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCC------------------CCcccccceEEEecCCCEE
Confidence            4699999997 777 8888777789999876  2333322110                  0124578999999735799


Q ss_pred             EEEECC------------------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhhee
Q 016318          146 YIADAY------------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       146 ~V~d~~------------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~  206 (391)
                      ||+|..                  .+|+++|+++++++.+...     +..|++|+++++|+ ||++++.          
T Consensus       141 ~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----~~~p~gia~~~dg~~lyv~d~~----------  205 (322)
T 2fp8_A          141 YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-----LHVPGGAEVSADSSFVLVAEFL----------  205 (322)
T ss_dssp             EEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-----ESCCCEEEECTTSSEEEEEEGG----------
T ss_pred             EEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-----CccCcceEECCCCCEEEEEeCC----------
Confidence            999965                  2399999998877665432     45799999999986 9999854          


Q ss_pred             eecccCCCceEEEEeCCC---CeEEEeccCCCCcceEEEccCCCEEEEEeCC----------CCeEEEEEeccccCccce
Q 016318          207 LVFSAEDTGRVLKYDPTT---KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS----------VGRLHKYWLIGEKAGNLE  273 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~---~~~~~~~~~~~~~ngia~~~d~~~l~v~et~----------~~~I~~~~~~g~~~g~~~  273 (391)
                             +++|.+|+.++   ++.+.+.. +..|+|++++++|+ +||++..          .++|.+++.+|.   ..+
T Consensus       206 -------~~~I~~~~~~~~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~---~~~  273 (322)
T 2fp8_A          206 -------SHQIVKYWLEGPKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGN---ILE  273 (322)
T ss_dssp             -------GTEEEEEESSSTTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSC---EEE
T ss_pred             -------CCeEEEEECCCCcCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCC---EEE
Confidence                   46899999875   34444433 22299999999998 9999765          467999976542   122


Q ss_pred             eecccC----CCCCceEeCCCCCEEEEEcCC
Q 016318          274 AFAILP----GYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       274 ~~~~~~----g~p~~i~~d~~G~lwva~~~~  300 (391)
                      .+....    ..|.+++. .+|++||+....
T Consensus       274 ~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~  303 (322)
T 2fp8_A          274 VIPLPPPFAGEHFEQIQE-HDGLLYIGTLFH  303 (322)
T ss_dssp             EEECCTTTTTSCCCEEEE-ETTEEEEECSSC
T ss_pred             EEECCCCCccccceEEEE-eCCEEEEeecCC
Confidence            232211    24666766 478899987553

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.59  E-value=1.3e-13  Score=127.53  Aligned_cols=196  Identities=13%  Similarity=0.083  Sum_probs=128.3

Q ss_pred             ccCcceEEEccCCCeeEEEe-cCCEEEEEeCC-c-eeEEEeecCCCcccCCCCCCccccccccCccCccceEEE---ecC
Q 016318           68 IQGPESMAFDPLGRGPYTGV-ADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF---DKK  141 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~-~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~---d~~  141 (391)
                      -.-||++.+|++...+|++. .+|+|.+++++ + ...+ ... ...  ..           -...-.|.||.+   |+ 
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~-~~s--~~-----------g~~~~~~sGl~~~~~D~-   75 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID-GAS--SN-----------GDGEQQMSGLSLLTHDN-   75 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT-TTC--CS-----------SCCSEEEEEEEESSSSS-
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC-Ccc--cc-----------CCCcceeeEEEEeccCC-
Confidence            35799999997655588777 78999999987 2 2333 111 000  00           001235789999   78 


Q ss_pred             CCcEEE-EEC-------------CCCeEEEeCC---CCeeEEceec---cC------CCcccCCcceeecCCCCEEEEeC
Q 016318          142 TGDLYI-ADA-------------YFGLMKVGPE---GGLATSLATE---AE------GVPLRFTNDLDIDDEGNVYFTDS  195 (391)
Q Consensus       142 ~g~L~V-~d~-------------~~gl~~~d~~---~g~~~~~~~~---~~------~~~~~~~~~l~~d~~G~ly~td~  195 (391)
                      +++||| ++.             ...|+++|..   +++.......   .+      +.....+|+|++|++|++|++++
T Consensus        76 ~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s  155 (334)
T 2p9w_A           76 SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA  155 (334)
T ss_dssp             CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred             CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence            699998 442             2449999988   6654433221   11      22345699999999999999985


Q ss_pred             CCcccchhheeeecccCCC-ceEEEEeCCCCeEEEecc------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecccc
Q 016318          196 STNYQRRNFMQLVFSAEDT-GRVLKYDPTTKQTTVLLR------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK  268 (391)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~-g~l~~~d~~~~~~~~~~~------~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~  268 (391)
                      .                 . +.|+++++++.....+..      ....+|||+++||++.|+++++ .++|+++++..+.
T Consensus       156 ~-----------------~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv  217 (334)
T 2p9w_A          156 L-----------------GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPY  217 (334)
T ss_dssp             E-----------------SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSS
T ss_pred             C-----------------CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCc
Confidence            3                 3 679999998775555431      1235789999999999999988 8999999987321


Q ss_pred             Cccceee--c---ccCCCCCce-EeCCCCCE-EEEEc
Q 016318          269 AGNLEAF--A---ILPGYPDNV-RTNEKGEF-WVAIH  298 (391)
Q Consensus       269 ~g~~~~~--~---~~~g~p~~i-~~d~~G~l-wva~~  298 (391)
                      .-....-  .   .+ ..|++| ....+|++ +|+..
T Consensus       218 ~~~v~~~~~G~~~~~-~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          218 AWPEPVKINGDFGTL-SGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             CCCEECEESSCCCCC-TTEEEEEEEEETTEEEEEEEE
T ss_pred             ceeecccccCCcccc-cCcccccccccCCEEEEEEcC
Confidence            1001100  0   11 247885 66678886 66554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.59  E-value=7.4e-13  Score=134.96  Aligned_cols=147  Identities=16%  Similarity=0.253  Sum_probs=115.0

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheee
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~  207 (391)
                      ...|.||++|+.+++||++|...+ |++++++++..+.+...    .+..|.+||+|. .|+||++|+.           
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~----g~~~P~GlAvD~~~~~LY~tD~~-----------  100 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF----GLDYPEGMAVDWLGKNLYWADTG-----------  100 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----SCSCCCEEEEETTTTEEEEEETT-----------
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC----CCCCcceEEEEeCCCEEEEEECC-----------
Confidence            457999999987889999998865 99999988766655432    235799999996 5789999965           


Q ss_pred             ecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCC-CCeEEEEEeccccCccceeecccCCCCCce
Q 016318          208 VFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIGEKAGNLEAFAILPGYPDNV  285 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i  285 (391)
                            .++|.+.+.+++..+++. ..+..|++|+++|.+..||+++.. ..+|+|++++|..   .+.+.+.-..|.+|
T Consensus       101 ------~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---~~~l~~~~~~P~Gl  171 (628)
T 4a0p_A          101 ------TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---RTTLVPNVGRANGL  171 (628)
T ss_dssp             ------TTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSCSSEEEE
T ss_pred             ------CCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---eEEEECCCCCcceE
Confidence                  478999998877666655 678899999999977779999975 6899999998843   23333322469999


Q ss_pred             EeCCC-CCEEEEEcCC
Q 016318          286 RTNEK-GEFWVAIHCR  300 (391)
Q Consensus       286 ~~d~~-G~lwva~~~~  300 (391)
                      ++|.+ +++|++....
T Consensus       172 alD~~~~~LY~aD~~~  187 (628)
T 4a0p_A          172 TIDYAKRRLYWTDLDT  187 (628)
T ss_dssp             EEETTTTEEEEEETTT
T ss_pred             EEccccCEEEEEECCC
Confidence            99985 6699988764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.59  E-value=6.2e-14  Score=136.88  Aligned_cols=190  Identities=13%  Similarity=0.137  Sum_probs=130.1

Q ss_pred             ccccCcceEEEccCCCeeEEEecC-----CEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEe
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVAD-----GRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~-----g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d  139 (391)
                      +.+..|.+|+++++|+ +|++...     ..++.++.. .+..-                     .......+|.++++|
T Consensus       179 ~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~---------------------~~~~~~~~P~giavd  236 (433)
T 4hw6_A          179 TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTER---------------------LSLCNARGAKTCAVH  236 (433)
T ss_dssp             CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCE---------------------EEEEECSSBCCCEEC
T ss_pred             cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecc---------------------ccccccCCCCEEEEe
Confidence            3567899999999999 6666543     245555443 11100                     000125779999999


Q ss_pred             cCCCcEEEEECCCC-eEEEeCCCCee-EEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCce
Q 016318          140 KKTGDLYIADAYFG-LMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       140 ~~~g~L~V~d~~~g-l~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      +++|+|||+|...+ |++++++++.+ +.+.....   ...+.+|+++++|+ ||++++.                 +++
T Consensus       237 ~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~---~~~~~~ia~dpdG~~LYvad~~-----------------~~~  296 (433)
T 4hw6_A          237 PQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT---KGSNFHIVWHPTGDWAYIIYNG-----------------KHC  296 (433)
T ss_dssp             TTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC---CSSCEEEEECTTSSEEEEEETT-----------------TTE
T ss_pred             CCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC---CCCcccEEEeCCCCEEEEEeCC-----------------CCE
Confidence            86799999998866 99999997776 44432211   23456799999997 9999965                 467


Q ss_pred             EEEEeCC--CCeE---EEec---------------cCCCCcceEEE---------ccCCCEEEEEeCCCCeEEEEEeccc
Q 016318          217 VLKYDPT--TKQT---TVLL---------------RNLQFPNGLSL---------SKDKSFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       217 l~~~d~~--~~~~---~~~~---------------~~~~~~ngia~---------~~d~~~l~v~et~~~~I~~~~~~g~  267 (391)
                      |++++.+  ++++   ..+.               ..+..|.|+++         +++++ |||+++.+++|++++.+|.
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~G~  375 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPEGR  375 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECTTSE
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECCCCC
Confidence            8886643  4432   1221               13567999999         77776 9999999999999986542


Q ss_pred             cCccceeecc------------------cCCCCCceEeC-CCCCEEEEEcCCCc
Q 016318          268 KAGNLEAFAI------------------LPGYPDNVRTN-EKGEFWVAIHCRRS  302 (391)
Q Consensus       268 ~~g~~~~~~~------------------~~g~p~~i~~d-~~G~lwva~~~~~~  302 (391)
                          ...++.                  .-..|.+|++| ++|++||+...+++
T Consensus       376 ----v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r  425 (433)
T 4hw6_A          376 ----VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHR  425 (433)
T ss_dssp             ----EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred             ----EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCE
Confidence                222110                  01258899999 89999999887643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=3.7e-13  Score=123.94  Aligned_cols=182  Identities=14%  Similarity=0.168  Sum_probs=127.0

Q ss_pred             ccCcceEEEccCCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           68 IQGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ...|.+++++++|+ +|++.. +++|.+++..  .+..+....                  ......+|.++++++ +|+
T Consensus        68 ~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~------------------~~~~~~~~~~i~~d~-~G~  127 (296)
T 3e5z_A           68 SHHQNGHCLNKQGH-LIACSHGLRRLERQREPGGEWESIADSF------------------EGKKLNSPNDVCLAP-DGS  127 (296)
T ss_dssp             CSSEEEEEECTTCC-EEEEETTTTEEEEECSTTCCEEEEECEE------------------TTEECCCCCCEEECT-TSC
T ss_pred             CCCcceeeECCCCc-EEEEecCCCeEEEEcCCCCcEEEEeecc------------------CCCCCCCCCCEEECC-CCC
Confidence            34689999999999 566554 5899999984  444442211                  011245788999998 899


Q ss_pred             EEEEEC------------------CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhhee
Q 016318          145 LYIADA------------------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       145 L~V~d~------------------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~  206 (391)
                      ||++|.                  ..+|++++++ ++++.+..     ....|++++++++|+++++++.          
T Consensus       128 l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-----~~~~~~gi~~s~dg~~lv~~~~----------  191 (296)
T 3e5z_A          128 LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-----DRVKPNGLAFLPSGNLLVSDTG----------  191 (296)
T ss_dssp             EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-----CCSSEEEEEECTTSCEEEEETT----------
T ss_pred             EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec-----CCCCCccEEECCCCCEEEEeCC----------
Confidence            999864                  2369999988 65555432     2357899999999987788754          


Q ss_pred             eecccCCCceEEEEeCC-CCeE----EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCC
Q 016318          207 LVFSAEDTGRVLKYDPT-TKQT----TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY  281 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~-~~~~----~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~  281 (391)
                             .++|++|+.+ +++.    +.+......|.+++++++|+ +|++.  .++|.+++.+|.   ....+. .+..
T Consensus       192 -------~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g~---~~~~~~-~~~~  257 (296)
T 3e5z_A          192 -------DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDGD---ELGRVL-TPQT  257 (296)
T ss_dssp             -------TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTSC---EEEEEE-CSSC
T ss_pred             -------CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCCC---EEEEEE-CCCC
Confidence                   4689998875 4554    23322345789999999998 99997  689999986542   122232 3323


Q ss_pred             CCceEe-CCCCC-EEEEEcC
Q 016318          282 PDNVRT-NEKGE-FWVAIHC  299 (391)
Q Consensus       282 p~~i~~-d~~G~-lwva~~~  299 (391)
                      |.++++ +++|+ +|+++..
T Consensus       258 ~~~~~f~~~d~~~L~v~t~~  277 (296)
T 3e5z_A          258 TSNLCFGGPEGRTLYMTVST  277 (296)
T ss_dssp             CCEEEEESTTSCEEEEEETT
T ss_pred             ceeEEEECCCCCEEEEEcCC
Confidence            889988 46765 9998754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=4.4e-13  Score=125.94  Aligned_cols=185  Identities=16%  Similarity=0.114  Sum_probs=128.6

Q ss_pred             cCcceEEEccCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ..|++++++ +++ +|+... ++.|.++|....+......                     ....|.++++++ +++|||
T Consensus        44 ~~~~~i~~~-~~~-lyv~~~~~~~v~viD~~t~~~~~~i~---------------------~~~~p~~i~~~~-~g~lyv   99 (328)
T 3dsm_A           44 DVAQSMVIR-DGI-GWIVVNNSHVIFAIDINTFKEVGRIT---------------------GFTSPRYIHFLS-DEKAYV   99 (328)
T ss_dssp             SCEEEEEEE-TTE-EEEEEGGGTEEEEEETTTCCEEEEEE---------------------CCSSEEEEEEEE-TTEEEE
T ss_pred             ccceEEEEE-CCE-EEEEEcCCCEEEEEECcccEEEEEcC---------------------CCCCCcEEEEeC-CCeEEE
Confidence            358899986 455 666655 5889999987333322111                     146699999987 679999


Q ss_pred             EECC-CCeEEEeCCCCeeEEceeccC-CCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          148 ADAY-FGLMKVGPEGGLATSLATEAE-GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       148 ~d~~-~gl~~~d~~~g~~~~~~~~~~-~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      ++.+ ..|.++|++++++........ ..+...|.+|++ .++.+|+++.+                ..++|.++|++++
T Consensus       100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~----------------~~~~v~viD~~t~  162 (328)
T 3dsm_A          100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWS----------------YQNRILKIDTETD  162 (328)
T ss_dssp             EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECT----------------TCCEEEEEETTTT
T ss_pred             EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCC----------------CCCEEEEEECCCC
Confidence            9944 569999999987654322111 122347899999 57899999842                1368999999998


Q ss_pred             eEEEeccCCCCcceEEEccCCCEEEEEeCCC----------CeEEEEEeccccCccceeecccC--CCCCceEeCCCCC-
Q 016318          226 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV----------GRLHKYWLIGEKAGNLEAFAILP--GYPDNVRTNEKGE-  292 (391)
Q Consensus       226 ~~~~~~~~~~~~ngia~~~d~~~l~v~et~~----------~~I~~~~~~g~~~g~~~~~~~~~--g~p~~i~~d~~G~-  292 (391)
                      +..........|+++++++||+ +|++....          ++|++++.+.   ++.......+  ..|.+|+++++|+ 
T Consensus       163 ~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t---~~v~~~~~~~~g~~p~~la~~~d~~~  238 (328)
T 3dsm_A          163 KVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAET---FTVEKQFKFKLGDWPSEVQLNGTRDT  238 (328)
T ss_dssp             EEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTT---TEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred             eEEEEEEcCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCC---CeEEEEEecCCCCCceeEEEecCCCE
Confidence            8765555556799999999998 88886654          7899998653   2222122233  2699999998776 


Q ss_pred             EEEEEc
Q 016318          293 FWVAIH  298 (391)
Q Consensus       293 lwva~~  298 (391)
                      +|++..
T Consensus       239 lyv~~~  244 (328)
T 3dsm_A          239 LYWINN  244 (328)
T ss_dssp             EEEESS
T ss_pred             EEEEcc
Confidence            777643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.1e-13  Score=134.91  Aligned_cols=190  Identities=14%  Similarity=0.176  Sum_probs=129.3

Q ss_pred             cccCcceEEEccCCCeeEEEecC-----CEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEec
Q 016318           67 QIQGPESMAFDPLGRGPYTGVAD-----GRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~-----g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~  140 (391)
                      .+..|.+|++|++|+.+|++...     ..++.++.+ .+.....                    . .....|.++++++
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~--------------------l-~~~~~p~giavdp  235 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITE--------------------L-TKGQNCNGAETHP  235 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEE--------------------E-EECSSCCCEEECT
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeee--------------------e-ccCCCceEEEEeC
Confidence            46789999999999966666542     245656554 2210000                    0 0246799999998


Q ss_pred             CCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEE
Q 016318          141 KTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVL  218 (391)
Q Consensus       141 ~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~  218 (391)
                      ++|+|||+|...+ |++++++++....+.....   ...|++|+++++|+ ||+++..                 +++|+
T Consensus       236 ~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~---~~~P~gia~~pdG~~lyv~d~~-----------------~~~I~  295 (430)
T 3tc9_A          236 INGELYFNSWNAGQVFRYDFTTQETTPLFTIQD---SGWEFHIQFHPSGNYAYIVVVN-----------------QHYIL  295 (430)
T ss_dssp             TTCCEEEEETTTTEEEEEETTTTEEEEEEECSS---SSCCEEEEECTTSSEEEEEETT-----------------TTEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC---CCcceeEEEcCCCCEEEEEECC-----------------CCEEE
Confidence            6789999998865 9999999887644432211   24799999999998 9999965                 46777


Q ss_pred             EEeCC--CCeE---EEec---------------cCCCCcc-eEEEc--------cCCCEEEEEeCCCCeEEEEEeccccC
Q 016318          219 KYDPT--TKQT---TVLL---------------RNLQFPN-GLSLS--------KDKSFFVFCEGSVGRLHKYWLIGEKA  269 (391)
Q Consensus       219 ~~d~~--~~~~---~~~~---------------~~~~~~n-gia~~--------~d~~~l~v~et~~~~I~~~~~~g~~~  269 (391)
                      +++.+  ++++   ..+.               ..+..|. |++++        ++++ |||+++.+++|.+++.+|   
T Consensus       296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~~~G---  371 (430)
T 3tc9_A          296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILTPQG---  371 (430)
T ss_dssp             EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEECTTS---
T ss_pred             EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEECCCC---
Confidence            76544  2332   1111               1255788 88885        3455 999999999999998554   


Q ss_pred             ccceeeccc---------C---------CCCCceEeCC-CCCEEEEEcCCCc
Q 016318          270 GNLEAFAIL---------P---------GYPDNVRTNE-KGEFWVAIHCRRS  302 (391)
Q Consensus       270 g~~~~~~~~---------~---------g~p~~i~~d~-~G~lwva~~~~~~  302 (391)
                       ....+...         .         ..|.+|++|+ +|+|||+...+++
T Consensus       372 -~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r  422 (430)
T 3tc9_A          372 -RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRR  422 (430)
T ss_dssp             -EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred             -cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCe
Confidence             22222210         1         2589999998 6899999877543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.57  E-value=4.8e-12  Score=118.58  Aligned_cols=194  Identities=13%  Similarity=0.152  Sum_probs=132.1

Q ss_pred             cCcceEEEccCCCeeEEEec-------CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC
Q 016318           69 QGPESMAFDPLGRGPYTGVA-------DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~-------~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~  141 (391)
                      .+|.+++++++|+.+|++..       ++.|..++....+.....                     .....|.+++++++
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~---------------------~~~~~~~~~~~s~d   99 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI---------------------HNDLKPFGATINNT   99 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE---------------------EESSCCCSEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE---------------------ecCCCcceEEECCC
Confidence            47899999999998888874       468999987632222111                     01356889999994


Q ss_pred             CCcEEEEECCCC-eEEEeCCCCeeEEceeccCCC-----cccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCC
Q 016318          142 TGDLYIADAYFG-LMKVGPEGGLATSLATEAEGV-----PLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       142 ~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~-----~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ++.+|+++...+ |..+|.++++.........+.     ....|.+++++++|+ +|+++.+                .+
T Consensus       100 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------~~  163 (353)
T 3vgz_A          100 TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------------KE  163 (353)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------------SS
T ss_pred             CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------------CC
Confidence            445999988644 999999988754332221111     112478899999986 7887732                24


Q ss_pred             ceEEEEeCCCCeEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc----cCCCCCceEeCC
Q 016318          215 GRVLKYDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI----LPGYPDNVRTNE  289 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~----~~g~p~~i~~d~  289 (391)
                      +.|+.+|.++++...... ....+++++++||++.+|++.. ++.|+.++....+.  ...+..    ....+.++++++
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~  240 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDT  240 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEET
T ss_pred             ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECC
Confidence            689999999888766555 4456899999999999999854 67899998654211  111111    123456799999


Q ss_pred             CCC-EEEEEcCCCc
Q 016318          290 KGE-FWVAIHCRRS  302 (391)
Q Consensus       290 ~G~-lwva~~~~~~  302 (391)
                      +|+ +|++......
T Consensus       241 dg~~l~~~~~~~~~  254 (353)
T 3vgz_A          241 ARQRAFITDSKAAE  254 (353)
T ss_dssp             TTTEEEEEESSSSE
T ss_pred             CCCEEEEEeCCCCE
Confidence            998 7777655443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.56  E-value=2.2e-12  Score=121.32  Aligned_cols=196  Identities=15%  Similarity=0.150  Sum_probs=127.8

Q ss_pred             ccCcceEEEccCCCeeEEEec---CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           68 IQGPESMAFDPLGRGPYTGVA---DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~---~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      ...|.+++++++|+ +|+...   ++.|..|+.+  ..+.+...                    ......|.++++++++
T Consensus        39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~--------------------~~~~~~p~~~a~spdg   97 (347)
T 3hfq_A           39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV--------------------VAPGTPPAYVAVDEAR   97 (347)
T ss_dssp             CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE--------------------EEESCCCSEEEEETTT
T ss_pred             cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee--------------------ecCCCCCEEEEECCCC
Confidence            46899999999999 777765   4788888654  32222211                    1124679999999944


Q ss_pred             CcEEEEECCCC-eEEEeCC-CCeeEEceec-cCCC------cccCCcceeecCCCCEEEEeCCCcccchhheeeecccCC
Q 016318          143 GDLYIADAYFG-LMKVGPE-GGLATSLATE-AEGV------PLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       143 g~L~V~d~~~g-l~~~d~~-~g~~~~~~~~-~~~~------~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      ..||+++...+ +..++.+ ++..+.+... ..+.      ....++.++++++|++|+++..                 
T Consensus        98 ~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----------------  160 (347)
T 3hfq_A           98 QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----------------  160 (347)
T ss_dssp             TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----------------
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----------------
Confidence            45899886555 6666653 4444443321 1111      1235678999999999988854                 


Q ss_pred             CceEEEEeCC-CCeEEEec----cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceee---cccC------
Q 016318          214 TGRVLKYDPT-TKQTTVLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF---AILP------  279 (391)
Q Consensus       214 ~g~l~~~d~~-~~~~~~~~----~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~---~~~~------  279 (391)
                      .+.+..|+.+ +++.....    .....|++++++|||+++|++....++|..++++.. .++.+..   ...+      
T Consensus       161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~  239 (347)
T 3hfq_A          161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-TGAFTQLGIVKTIPADYTAH  239 (347)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESSCTTCCSC
T ss_pred             CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCceEEeeeeeecCCCCCCC
Confidence            4578778776 56554322    223468899999999999999888888888887641 1222222   2222      


Q ss_pred             CCCCceEeCCCCC-EEEEEcCCCc
Q 016318          280 GYPDNVRTNEKGE-FWVAIHCRRS  302 (391)
Q Consensus       280 g~p~~i~~d~~G~-lwva~~~~~~  302 (391)
                      ..|.+++++++|+ +|++......
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~  263 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNT  263 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTE
T ss_pred             CcceeEEECCCCCEEEEEeCCCCE
Confidence            2356699999998 7777654443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=7.5e-13  Score=122.37  Aligned_cols=184  Identities=14%  Similarity=0.188  Sum_probs=129.1

Q ss_pred             cCcceEEEccC-CCeeEEEecCCEEEEEeCC-ceeEE-EeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           69 QGPESMAFDPL-GRGPYTGVADGRILFWDGL-KWTDF-AFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        69 ~gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      ..|.+++++++ |+ +|+++.+++|++++.+ +...+ ....                  .......|.++++|+ +|+|
T Consensus        71 ~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~g~~~~~~~~~~------------------~~~~~~~~~~i~~d~-~g~l  130 (314)
T 1pjx_A           71 GIPAGCQCDRDANQ-LFVADMRLGLLVVQTDGTFEEIAKKDS------------------EGRRMQGCNDCAFDY-EGNL  130 (314)
T ss_dssp             CCEEEEEECSSSSE-EEEEETTTEEEEEETTSCEEECCSBCT------------------TSCBCBCCCEEEECT-TSCE
T ss_pred             CCCceEEEecCCCc-EEEEECCCCEEEEeCCCCEEEEEeccC------------------CCccccCCcCEEECC-CCCE
Confidence            57899999999 77 7888777789999876 32222 1100                  001135689999998 7999


Q ss_pred             EEEECCC----------------CeEEEeCCCCeeEEceeccCCCcccCCcceeec----CCC-CEEEEeCCCcccchhh
Q 016318          146 YIADAYF----------------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDID----DEG-NVYFTDSSTNYQRRNF  204 (391)
Q Consensus       146 ~V~d~~~----------------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d----~~G-~ly~td~~~~~~~~~~  204 (391)
                      ||++...                +|++++++ ++.+.+...     ...+++++++    ++| .+|+++..        
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~--------  196 (314)
T 1pjx_A          131 WITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAETP--------  196 (314)
T ss_dssp             EEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEETT--------
T ss_pred             EEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC-----CCCcceEEEecccCCCCCEEEEEECC--------
Confidence            9998753                59999988 655544322     2357899999    998 69999854        


Q ss_pred             eeeecccCCCceEEEEeCC-CCeEE---Eec---cCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEec-cccCccceee
Q 016318          205 MQLVFSAEDTGRVLKYDPT-TKQTT---VLL---RNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI-GEKAGNLEAF  275 (391)
Q Consensus       205 ~~~~~~~~~~g~l~~~d~~-~~~~~---~~~---~~~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~~-g~~~g~~~~~  275 (391)
                               +++|++||.+ +++..   .+.   ... ..|.+++++++|+ +|+++..+++|.+++.+ |..   ...+
T Consensus       197 ---------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~---~~~~  263 (314)
T 1pjx_A          197 ---------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQP---KMRI  263 (314)
T ss_dssp             ---------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSC---SEEE
T ss_pred             ---------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcE---eEEE
Confidence                     4689999865 45422   111   112 5689999999998 99998777899999865 321   1222


Q ss_pred             cccC-CCCCceEeCCCCC-EEEEEcCC
Q 016318          276 AILP-GYPDNVRTNEKGE-FWVAIHCR  300 (391)
Q Consensus       276 ~~~~-g~p~~i~~d~~G~-lwva~~~~  300 (391)
                       ..+ ..|.+++++++|+ +|++....
T Consensus       264 -~~~~~~~~~i~~~~dg~~l~v~~~~~  289 (314)
T 1pjx_A          264 -RCPFEKPSNLHFKPQTKTIFVTEHEN  289 (314)
T ss_dssp             -ECSSSCEEEEEECTTSSEEEEEETTT
T ss_pred             -eCCCCCceeEEECCCCCEEEEEeCCC
Confidence             233 4688999999999 99987653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.53  E-value=7e-13  Score=122.61  Aligned_cols=184  Identities=16%  Similarity=0.159  Sum_probs=128.8

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ..|.+++++++|+ +|++. +++|++++.+  .++.+.....                  .....+|.++++|+ +|++|
T Consensus        54 ~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~------------------~~~~~~~~di~~d~-dG~l~  112 (297)
T 3g4e_A           54 APVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDN------------------DKKNNRFNDGKVDP-AGRYF  112 (297)
T ss_dssp             SCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCT------------------TCSSEEEEEEEECT-TSCEE
T ss_pred             CceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCC------------------CCCCCCCCCEEECC-CCCEE
Confidence            4688999999999 88887 5689999976  4444432210                  01246789999999 79999


Q ss_pred             EEECC------------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCC
Q 016318          147 IADAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       147 V~d~~------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      +++..            .+|+++++++ +.+.+...     +..||+++++++|+ +|++++.                 
T Consensus       113 ~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~-----~~~pngi~~spdg~~lyv~~~~-----------------  169 (297)
T 3g4e_A          113 AGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQ-----VDISNGLDWSLDHKIFYYIDSL-----------------  169 (297)
T ss_dssp             EEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEE-----ESBEEEEEECTTSCEEEEEEGG-----------------
T ss_pred             EecCCcccccccccCCCcEEEEEECCC-CEEEEeec-----cccccceEEcCCCCEEEEecCC-----------------
Confidence            99742            2499999874 44443322     34789999999985 9999854                 


Q ss_pred             CceEEEEeC--CCCeEE---Eec---cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC-CCCCc
Q 016318          214 TGRVLKYDP--TTKQTT---VLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP-GYPDN  284 (391)
Q Consensus       214 ~g~l~~~d~--~~~~~~---~~~---~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~-g~p~~  284 (391)
                      +++|++|+.  ++++..   ++.   .....|.|++++++|+ ||++...+++|++++.+.   ++.......| ..|.+
T Consensus       170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~t---G~~~~~i~~p~~~~t~  245 (297)
T 3g4e_A          170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVT---GKRLQTVKLPVDKTTS  245 (297)
T ss_dssp             GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTT---CCEEEEEECSSSBEEE
T ss_pred             CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCC---ceEEEEEECCCCCceE
Confidence            467888764  566542   222   2235789999999997 999988888999998652   3322222344 46788


Q ss_pred             eEeC-CCCC-EEEEEcCC
Q 016318          285 VRTN-EKGE-FWVAIHCR  300 (391)
Q Consensus       285 i~~d-~~G~-lwva~~~~  300 (391)
                      +++. ++++ +||++...
T Consensus       246 ~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          246 CCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEEESGGGCEEEEEEBCT
T ss_pred             EEEeCCCCCEEEEEcCCc
Confidence            9997 5654 99988754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.53  E-value=3.2e-13  Score=139.52  Aligned_cols=147  Identities=14%  Similarity=0.199  Sum_probs=108.7

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCC----CeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchh
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEG----GLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRN  203 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~----g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~  203 (391)
                      ..+|.+|++++.++.||++|...+ |+++++++    ...+.+.    ...+..|.+|++|. .|+||+++..       
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i----~~~~~~P~glavD~~~g~LY~tD~~-------  473 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYWTDSV-------  473 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC----CSCC--CCCEECCCSSSBCEECCTT-------
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE----eCCCCCcceEEEEeeCCcEEEEecc-------
Confidence            577999999976788999998754 99999886    2222111    11245789999995 6799999864       


Q ss_pred             heeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCC-CeEEEEEeccccCccceeec-ccCC
Q 016318          204 FMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFA-ILPG  280 (391)
Q Consensus       204 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~-~~I~~~~~~g~~~g~~~~~~-~~~g  280 (391)
                                .++|.+++++++..+++. ..+..|++|+++|++.+||+++... ++|++++++|..   .+++. ..-.
T Consensus       474 ----------~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~---~~~l~~~~l~  540 (699)
T 1n7d_A          474 ----------LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQ  540 (699)
T ss_dssp             ----------TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC---CCEESCSSCS
T ss_pred             ----------CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC---eeEEEeCCCC
Confidence                      478999999877766665 4578899999999877799998765 799999887742   22232 2224


Q ss_pred             CCCceEeCCC-CCEEEEEcCC
Q 016318          281 YPDNVRTNEK-GEFWVAIHCR  300 (391)
Q Consensus       281 ~p~~i~~d~~-G~lwva~~~~  300 (391)
                      .|.+|++|++ ++||++....
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~  561 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKL  561 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTT
T ss_pred             CccEEEEeccCCEEEEEecCC
Confidence            7999999965 6799998664

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.53  E-value=1.3e-12  Score=136.42  Aligned_cols=187  Identities=16%  Similarity=0.122  Sum_probs=120.5

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCc-----eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLK-----WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      .+++.|++|+ +|+|+. +++++++...     +..+.... .               ..........+|..|+ +|+||
T Consensus       327 ~~i~~D~~g~-lWiGt~-~Gl~~~~~~~~~~~~~~~~~~~~-~---------------~~~l~~~~v~~i~~d~-~g~lW  387 (758)
T 3ott_A          327 YSLFRDSKGF-YWFGGA-NGLIRFTDPAGERHDAIWYRMGD-K---------------TYPLSHNRIRHIYEDK-EQQLW  387 (758)
T ss_dssp             EEEEECTTCC-EEEEET-TEEEEESCTTSSCCCCEEECTTC-S---------------SSCCSCSCEEEEEECT-TSCEE
T ss_pred             EEEEEcCCCC-EEEeeC-CcceeecccccccceeEEeccCC-c---------------CCCCCCCceEEEEECC-CCCEE
Confidence            4788899999 999986 4799997651     22221100 0               0000124567888887 89999


Q ss_pred             EEECCCCeEEEeCCCCeeEEceeccC-C-CcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          147 IADAYFGLMKVGPEGGLATSLATEAE-G-VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       147 V~d~~~gl~~~d~~~g~~~~~~~~~~-~-~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      |+. ..||.++++++++++.+..... + ........+..|++|+||+++.+                  ++|++||+++
T Consensus       388 igt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~------------------~Gl~~~~~~~  448 (758)
T 3ott_A          388 IAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCL------------------GGIFVVDKHK  448 (758)
T ss_dssp             EEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESS------------------SCEEEEEHHH
T ss_pred             EEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECC------------------CceEEEcccc
Confidence            998 4699999999998877642211 1 12235677889999999999853                  5799998653


Q ss_pred             ------CeEE---Ee--ccCCC--CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cC--CCCCceEe
Q 016318          225 ------KQTT---VL--LRNLQ--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LP--GYPDNVRT  287 (391)
Q Consensus       225 ------~~~~---~~--~~~~~--~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~--g~p~~i~~  287 (391)
                            +...   .+  ..++.  ....|..+++|+ ||++....+.|.+++.+.   ++.+.+..  +.  ..+..+..
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~---~~~~~~~~~~~~~~~~~~~i~~  524 (758)
T 3ott_A          449 LMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRT---REVTKLFADELTGEKSPNYLLC  524 (758)
T ss_dssp             HHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTT---TEEEEECTTTSCGGGCEEEEEE
T ss_pred             ccccCCcceecccccccccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCC---CceEEecCCCcCCCcccceEEE
Confidence                  2221   11  12222  356788888898 998322346899998543   33343321  11  23567889


Q ss_pred             CCCCCEEEEEcCC
Q 016318          288 NEKGEFWVAIHCR  300 (391)
Q Consensus       288 d~~G~lwva~~~~  300 (391)
                      |.+|++|+++..+
T Consensus       525 d~~g~lWigt~~G  537 (758)
T 3ott_A          525 DEDGLLWVGFHGG  537 (758)
T ss_dssp             CTTSCEEEEETTE
T ss_pred             CCCCCEEEEecCc
Confidence            9999999998653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.52  E-value=5.9e-13  Score=124.47  Aligned_cols=148  Identities=13%  Similarity=0.209  Sum_probs=106.5

Q ss_pred             CccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318          131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~  209 (391)
                      ..|.++++++ +|+||+++.. .+|+++|+++++++.+....    ...+.+++++++|++|+++...            
T Consensus        45 ~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~i~~~~dg~l~v~~~~~------------  107 (333)
T 2dg1_A           45 LQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSH----KANPAAIKIHKDGRLFVCYLGD------------  107 (333)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECS----SSSEEEEEECTTSCEEEEECTT------------
T ss_pred             ccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCC----CCCcceEEECCCCcEEEEeCCC------------
Confidence            4578999998 7899998776 45999999988877654221    2468899999999999998541            


Q ss_pred             ccCCCceEEEEeCCCCeEEEecc---CCCCcceEEEccCCCEEEEEeCC------CCeEEEEEeccccCccceeecccCC
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLLR---NLQFPNGLSLSKDKSFFVFCEGS------VGRLHKYWLIGEKAGNLEAFAILPG  280 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~~---~~~~~ngia~~~d~~~l~v~et~------~~~I~~~~~~g~~~g~~~~~~~~~g  280 (391)
                       ....++|+++|+++++.+.+..   ....+++++++++|+ +|++...      ..+|++++.++   ++...+.....
T Consensus       108 -~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~  182 (333)
T 2dg1_A          108 -FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF---RTVTPIIQNIS  182 (333)
T ss_dssp             -SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS---CCEEEEEEEES
T ss_pred             -CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCC---CEEEEeecCCC
Confidence             0112589999999888764332   234689999999998 8888654      36899987554   23333322223


Q ss_pred             CCCceEeCCCCC-EEEEEcCC
Q 016318          281 YPDNVRTNEKGE-FWVAIHCR  300 (391)
Q Consensus       281 ~p~~i~~d~~G~-lwva~~~~  300 (391)
                      .|.+++++++|+ +|++....
T Consensus       183 ~~~~i~~~~dg~~l~v~~~~~  203 (333)
T 2dg1_A          183 VANGIALSTDEKVLWVTETTA  203 (333)
T ss_dssp             SEEEEEECTTSSEEEEEEGGG
T ss_pred             cccceEECCCCCEEEEEeCCC
Confidence            578899999997 88886543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.51  E-value=1.5e-12  Score=123.06  Aligned_cols=195  Identities=15%  Similarity=0.140  Sum_probs=133.3

Q ss_pred             ccccCcceEEEccCCCeeEEEec-----CCEEEEEeCC--c-eeEEEeecCCCcccCCCCCCccccccccCccCccceEE
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVA-----DGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~-----~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~  137 (391)
                      +.+..|.+|++|++|++|++++.     .++|++++.+  + ...+. ....                .......|.+++
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~-~~~~----------------~~~~~~~~~~v~  126 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIY-LPPP----------------ITLSNSFVNDLA  126 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEE-CCTT----------------TSCTTCCCCEEE
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEE-CChh----------------hcccccccceEE
Confidence            45779999999999995555555     5799999976  2 22221 1100                001235689999


Q ss_pred             EecCCCcEEEEEC---C-CCeEEEeCCCCeeEEceec------------cCCCcc-------------cCCcceeecCCC
Q 016318          138 FDKKTGDLYIADA---Y-FGLMKVGPEGGLATSLATE------------AEGVPL-------------RFTNDLDIDDEG  188 (391)
Q Consensus       138 ~d~~~g~L~V~d~---~-~gl~~~d~~~g~~~~~~~~------------~~~~~~-------------~~~~~l~~d~~G  188 (391)
                      ++++++.+||+|.   . .+|+++|+++++...+...            .++..+             ..+++|+++++|
T Consensus       127 vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg  206 (343)
T 2qe8_A          127 VDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN  206 (343)
T ss_dssp             EETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS
T ss_pred             EecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC
Confidence            9975689999997   4 5699999987765543211            011111             247999999999


Q ss_pred             -CEEEEeCCCcccchhheeeecccCCCceEEEEeCC---CCe---------EEEeccCCCCcceEEEccCCCEEEEEeCC
Q 016318          189 -NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT---TKQ---------TTVLLRNLQFPNGLSLSKDKSFFVFCEGS  255 (391)
Q Consensus       189 -~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~---~~~---------~~~~~~~~~~~ngia~~~d~~~l~v~et~  255 (391)
                       .||+++..                 ..++++++..   .+.         +... .....|+|++++++|+ +|+++..
T Consensus       207 ~~ly~~~~~-----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~  267 (343)
T 2qe8_A          207 EWLYLSPMH-----------------STSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLA  267 (343)
T ss_dssp             CEEEEEESS-----------------CSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGG
T ss_pred             CEEEEEeCC-----------------CCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccC
Confidence             59999854                 2478888742   111         1111 1234799999999998 9999999


Q ss_pred             CCeEEEEEe-ccccCccceeecccC--CCCCceEeCCCCCEEEEEcCC
Q 016318          256 VGRLHKYWL-IGEKAGNLEAFAILP--GYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       256 ~~~I~~~~~-~g~~~g~~~~~~~~~--g~p~~i~~d~~G~lwva~~~~  300 (391)
                      +++|.+++. +|    +...+...+  ..|++++++++|++|++....
T Consensus       268 ~~~V~~~d~~~G----~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          268 HSAIGVITSADR----AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             GTEEEEEETTTT----EEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             CCeEEEEECCCC----CEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            999999986 43    344444333  369999999999999997654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.50  E-value=3.8e-12  Score=119.27  Aligned_cols=189  Identities=14%  Similarity=0.144  Sum_probs=135.0

Q ss_pred             cceEEEccCCCeeEEEec--CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           71 PESMAFDPLGRGPYTGVA--DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~--~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      |++++++++|+.+|++..  ++.|+.++....+......                    .....|.+++++++++.||++
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--------------------~~~~~~~~~~~s~dg~~l~~~  202 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--------------------NTGKMSTGLALDSEGKRLYTT  202 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC--------------------CCCTTCCCCEEETTTTEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec--------------------CCCCccceEEECCCCCEEEEE
Confidence            788999999998888773  6889999987333222111                    013448889999855568998


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      +....|..+|..+++...........+...+.+++++++|+ +|+++..                 .+.+..||..+++.
T Consensus       203 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          203 NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----------------AAEVLVVDTRNGNI  265 (353)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----------------SSEEEEEETTTCCE
T ss_pred             cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcE
Confidence            77666999999988765433221112234678899999986 8888743                 47899999988876


Q ss_pred             EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEcCC
Q 016318          228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCR  300 (391)
Q Consensus       228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~  300 (391)
                      ..... ...+.+++++||++.+|++....+.|..++...   ++.......+..|.+++++++|+ +|++....
T Consensus       266 ~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          266 LAKVA-APESLAVLFNPARNEAYVTHRQAGKVSVIDAKS---YKVVKTFDTPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEE-CSSCCCEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEEEE-cCCCceEEECCCCCEEEEEECCCCeEEEEECCC---CeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence            54433 234678999999999999988889999998653   22221223445688999999998 88887664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.49  E-value=1.9e-12  Score=120.14  Aligned_cols=186  Identities=12%  Similarity=0.138  Sum_probs=128.6

Q ss_pred             cCcceEEEccCCCeeEEEec-CCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           69 QGPESMAFDPLGRGPYTGVA-DGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ..|.++++|++|+ +|++.. +++|.+++.+ +++.+.....                  .....+|.++++++ +|++|
T Consensus        86 ~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~g~~~~~~~~~~------------------~~~~~~~~~i~~d~-dG~l~  145 (305)
T 3dr2_A           86 AFTNGNAVDAQQR-LVHCEHGRRAITRSDADGQAHLLVGRYA------------------GKRLNSPNDLIVAR-DGAIW  145 (305)
T ss_dssp             SCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEECEET------------------TEECSCCCCEEECT-TSCEE
T ss_pred             CccceeeECCCCC-EEEEECCCCEEEEECCCCCEEEEEeccC------------------CCccCCCCCEEECC-CCCEE
Confidence            4689999999999 677665 4799999876 5444432110                  01245688999998 89999


Q ss_pred             EEEC------------------CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheee
Q 016318          147 IADA------------------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       147 V~d~------------------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~  207 (391)
                      ++|.                  ..+|+++|+++++++.+. .     +..|++++++++|+ ||++++...         
T Consensus       146 ~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-----~~~p~gl~~spdg~~lyv~~~~~~---------  210 (305)
T 3dr2_A          146 FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-----LDHPNGLAFSPDEQTLYVSQTPEQ---------  210 (305)
T ss_dssp             EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-----ESSEEEEEECTTSSEEEEEECCC----------
T ss_pred             EeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-----CCCCcceEEcCCCCEEEEEecCCc---------
Confidence            9763                  135999999888777654 2     35789999999996 999985410         


Q ss_pred             ecccCCCceEEEEeCCCCeE---EEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCC
Q 016318          208 VFSAEDTGRVLKYDPTTKQT---TVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD  283 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~---~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~  283 (391)
                         ....++|++|+.+++.+   +.+. .....|.|++++++|+ ||++.  .++|++++.+|..   ...+ ..+..|.
T Consensus       211 ---~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~--~~gv~~~~~~g~~---~~~~-~~~~~~~  280 (305)
T 3dr2_A          211 ---GHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS--GTGVCVFDSDGQL---LGHI-PTPGTAS  280 (305)
T ss_dssp             -----CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC--SSEEEEECTTSCE---EEEE-ECSSCCC
T ss_pred             ---CCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEec--CCcEEEECCCCCE---EEEE-ECCCcee
Confidence               01125788888765432   2222 1235789999999999 99985  4579999865531   1222 3444688


Q ss_pred             ceEeCCCCC-EEEEEcC
Q 016318          284 NVRTNEKGE-FWVAIHC  299 (391)
Q Consensus       284 ~i~~d~~G~-lwva~~~  299 (391)
                      +++++++++ +|++...
T Consensus       281 ~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          281 NCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             EEEECTTSCEEEEEETT
T ss_pred             EEEEeCCCCEEEEEcCC
Confidence            999987775 9998764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.49  E-value=1.1e-11  Score=116.47  Aligned_cols=182  Identities=12%  Similarity=0.064  Sum_probs=118.6

Q ss_pred             ccceeccccccCcceEEEccCCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccce
Q 016318           59 NSEIKFLNQIQGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLG  135 (391)
Q Consensus        59 ~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~g  135 (391)
                      +++.+.++ +..|.+|++.++|+ +|++.. .|+|++++.+  ....+.....                ......+.|+|
T Consensus        23 ~~~~va~g-L~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~----------------v~~~g~~GllG   84 (347)
T 3das_A           23 VLRTVATG-LNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPG----------------VSPSGEGGLLG   84 (347)
T ss_dssp             EEEEEECC-CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTT----------------CCCBTTBSEEE
T ss_pred             eeEEeecC-CCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCc----------------eeecCCCCcee
Confidence            44555444 88999999999999 777777 8999999865  3333322110                00112356899


Q ss_pred             EEEecC---CCcEEEEEC---CCCeEEEeCCCC--------eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccc
Q 016318          136 LRFDKK---TGDLYIADA---YFGLMKVGPEGG--------LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQR  201 (391)
Q Consensus       136 i~~d~~---~g~L~V~d~---~~gl~~~d~~~g--------~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~  201 (391)
                      |+++++   ++.|||+.+   .+.|.++..+.+        ..+.+..........+...|++++||.|||+........
T Consensus        85 ia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~  164 (347)
T 3das_A           85 IALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTG  164 (347)
T ss_dssp             EEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGG
T ss_pred             eEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCc
Confidence            999973   588999753   234899876642        233333322222234678899999999999953211100


Q ss_pred             hhheeeecccCCCceEEEEeCCCC--------eEEEeccCCCCcceEEEccCCCEEEEEeCCCC---eEEEEE
Q 016318          202 RNFMQLVFSAEDTGRVLKYDPTTK--------QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG---RLHKYW  263 (391)
Q Consensus       202 ~~~~~~~~~~~~~g~l~~~d~~~~--------~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~---~I~~~~  263 (391)
                      .  ..+  .....|+|+|+++++.        ..+++..++..|.|++++|+|+ ||++|....   .|.++.
T Consensus       165 ~--~qd--~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~  232 (347)
T 3das_A          165 L--SQD--RKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIK  232 (347)
T ss_dssp             G--TTC--TTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEEC
T ss_pred             c--ccC--CCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEc
Confidence            0  000  0123689999999765        3456778889999999999988 999997653   455553

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.48  E-value=9.9e-12  Score=115.62  Aligned_cols=212  Identities=13%  Similarity=0.133  Sum_probs=133.6

Q ss_pred             EEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC
Q 016318           74 MAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG  153 (391)
Q Consensus        74 i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g  153 (391)
                      .+++ +|+ +|+++.+++|++++.+..........                     ......+.+++ +++||++....+
T Consensus       103 ~~~~-~~~-l~v~t~~~~l~~~d~~g~~~~~~~~~---------------------~~~~~~~~~~~-~g~l~vgt~~~~  158 (330)
T 3hxj_A          103 FTIF-EDI-LYVTSMDGHLYAINTDGTEKWRFKTK---------------------KAIYATPIVSE-DGTIYVGSNDNY  158 (330)
T ss_dssp             EEEE-TTE-EEEECTTSEEEEECTTSCEEEEEECS---------------------SCCCSCCEECT-TSCEEEECTTSE
T ss_pred             ceEE-CCE-EEEEecCCEEEEEcCCCCEEEEEcCC---------------------CceeeeeEEcC-CCEEEEEcCCCE
Confidence            3444 555 88888888898888761111111100                     11123346666 788999987778


Q ss_pred             eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC
Q 016318          154 LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN  233 (391)
Q Consensus       154 l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~  233 (391)
                      |+++|++ ++...... ..   ......+++|++|++|+++ +                   +|+++|+.+.........
T Consensus       159 l~~~d~~-g~~~~~~~-~~---~~~~~~~~~d~~g~l~v~t-~-------------------~l~~~d~~g~~~~~~~~~  213 (330)
T 3hxj_A          159 LYAINPD-GTEKWRFK-TN---DAITSAASIGKDGTIYFGS-D-------------------KVYAINPDGTEKWNFYAG  213 (330)
T ss_dssp             EEEECTT-SCEEEEEE-CS---SCCCSCCEECTTCCEEEES-S-------------------SEEEECTTSCEEEEECCS
T ss_pred             EEEECCC-CCEeEEEe-cC---CCceeeeEEcCCCEEEEEe-C-------------------EEEEECCCCcEEEEEccC
Confidence            9999998 54322111 11   2245678888999999987 3                   788898443333333333


Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCcc
Q 016318          234 LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPK  313 (391)
Q Consensus       234 ~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~  313 (391)
                      .....+++++++|+ +|++. .++.|++++.+|.   ....+......+..+.++.+|++|+++..              
T Consensus       214 ~~~~~~~~~~~~g~-l~v~t-~~~gl~~~~~~g~---~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--------------  274 (330)
T 3hxj_A          214 YWTVTRPAISEDGT-IYVTS-LDGHLYAINPDGT---EKWRFKTGKRIESSPVIGNTDTIYFGSYD--------------  274 (330)
T ss_dssp             SCCCSCCEECTTSC-EEEEE-TTTEEEEECTTSC---EEEEEECSSCCCSCCEECTTSCEEEECTT--------------
T ss_pred             CcceeceEECCCCe-EEEEc-CCCeEEEECCCCC---EeEEeeCCCCccccceEcCCCeEEEecCC--------------
Confidence            34567788888887 88884 4678999864332   11122222234566888889999998754              


Q ss_pred             ceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEE-ECCEEEEecCCC
Q 016318          314 IRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEE-KDGKLWMGSVLM  382 (391)
Q Consensus       314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~-~~g~Lylgs~~~  382 (391)
                                               +.+.++|++|+.+..+.....    .+.++.. .+|+||+|+...
T Consensus       275 -------------------------ggl~~~d~~g~~~~~~~~~~~----~~~~~~~d~~g~l~~gt~~G  315 (330)
T 3hxj_A          275 -------------------------GHLYAINPDGTEKWNFETGSW----IIATPVIDENGTIYFGTRNG  315 (330)
T ss_dssp             -------------------------CEEEEECTTSCEEEEEECSSC----CCSCCEECTTCCEEEECTTS
T ss_pred             -------------------------CCEEEECCCCcEEEEEEcCCc----cccceEEcCCCEEEEEcCCC
Confidence                                     347788999998877764322    2344445 679999998765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=4.6e-12  Score=124.31  Aligned_cols=193  Identities=15%  Similarity=0.142  Sum_probs=128.9

Q ss_pred             cccCcceEEE-------ccCCCeeEEEecCC-------EEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCc
Q 016318           67 QIQGPESMAF-------DPLGRGPYTGVADG-------RILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHI  129 (391)
Q Consensus        67 ~~~gPe~i~~-------d~~G~~ly~~~~~g-------~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (391)
                      .+..|.+|++       +++|+.+|++...+       .|+.++..   .+..            .+..      .....
T Consensus       184 ~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~------------~~~~------~~v~~  245 (496)
T 3kya_A          184 PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDD------------RSDI------QLIAA  245 (496)
T ss_dssp             SCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCST------------TSCE------EEEEE
T ss_pred             ccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceee------------cccc------eeecc
Confidence            3567999999       99998677776554       36666432   1110            0000      00012


Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCC-------CCee------------EEceeccCCCcccCCcceeecCCCC
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPE-------GGLA------------TSLATEAEGVPLRFTNDLDIDDEGN  189 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~-------~g~~------------~~~~~~~~~~~~~~~~~l~~d~~G~  189 (391)
                      ...|.|++++++++.||+++...+ |+++|++       ++.+            +.+....   ....|++|+++++|+
T Consensus       246 ~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~---~~~~p~~ia~~p~G~  322 (496)
T 3kya_A          246 YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA---DPSWEFQIFIHPTGK  322 (496)
T ss_dssp             ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS---SSSCCEEEEECTTSS
T ss_pred             CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecC---CCCCceEEEEcCCCC
Confidence            457999999987789999999877 9999998       6654            1222111   124689999999998


Q ss_pred             -EEEEeCCCcccchhheeeecccCCCceEEEEe--CCCCeE---EEec---------------cCCCCcc-eEEEc----
Q 016318          190 -VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD--PTTKQT---TVLL---------------RNLQFPN-GLSLS----  243 (391)
Q Consensus       190 -ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d--~~~~~~---~~~~---------------~~~~~~n-gia~~----  243 (391)
                       ||++|+.                 +.+|++++  ..++.+   .++.               ..+..|. |++++    
T Consensus       323 ~lYvaD~~-----------------~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~  385 (496)
T 3kya_A          323 YAYFGVIN-----------------NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDY  385 (496)
T ss_dssp             EEEEEETT-----------------TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTC
T ss_pred             EEEEEeCC-----------------CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccc
Confidence             8999965                 46788844  444433   2221               1345788 88886    


Q ss_pred             ---cCCCEEEEEeCCCCeEEEEEeccccCccceeec-----------------c-------cCCCCCceEeCCC-CCEEE
Q 016318          244 ---KDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-----------------I-------LPGYPDNVRTNEK-GEFWV  295 (391)
Q Consensus       244 ---~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-----------------~-------~~g~p~~i~~d~~-G~lwv  295 (391)
                         .+++ |||+++.++||++++.+|.    ...++                 +       .-..|.+|++|++ |+|||
T Consensus       386 ~~~~~g~-lyVaD~~N~rIr~i~~~G~----v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyV  460 (496)
T 3kya_A          386 TGEEEYD-FYFVDRLNFCVRKVTPEGI----VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYV  460 (496)
T ss_dssp             CSSCCEE-EEEEEGGGTEEEEECTTCB----EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEE
T ss_pred             cccCCCe-EEEEECCCCEEEEEeCCCC----EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEE
Confidence               4565 9999999999999986552    22121                 0       0024788999996 99999


Q ss_pred             EEcCCCc
Q 016318          296 AIHCRRS  302 (391)
Q Consensus       296 a~~~~~~  302 (391)
                      +...+++
T Consensus       461 aD~~N~r  467 (496)
T 3kya_A          461 HDQVGHT  467 (496)
T ss_dssp             EETTTTE
T ss_pred             EeCCCCE
Confidence            9987644

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.46  E-value=5.5e-12  Score=131.68  Aligned_cols=185  Identities=19%  Similarity=0.247  Sum_probs=120.2

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ..+|+.|++|+ +|+++ +++|.+++++  .++.+......                ..........+..|+ +|+|||+
T Consensus       375 v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~i~~d~-~g~lWig  435 (758)
T 3ott_A          375 IRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNT----------------GTYNTNWTYYIFEDT-AGQLWIS  435 (758)
T ss_dssp             EEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC------------------CBSSSEEEEEECT-TSEEEEE
T ss_pred             eEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCc----------------CCCCCceEEEEEEcC-CCCEEEE
Confidence            35788999998 99999 5689999986  45555321110                000123456788887 7999999


Q ss_pred             ECCCCeEEEeCCC------CeeE---EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          149 DAYFGLMKVGPEG------GLAT---SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       149 d~~~gl~~~d~~~------g~~~---~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      ....||+++|+++      +...   .+ ....+.+...++.|..|++|+||+....                 .++|++
T Consensus       436 T~~~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~d~~g~lWi~~~t-----------------~~Gl~~  497 (758)
T 3ott_A          436 TCLGGIFVVDKHKLMQSTSGQYIAEQNY-SVHNGLSGMFINQIIPDNEGNVWVLLYN-----------------NKGIDK  497 (758)
T ss_dssp             ESSSCEEEEEHHHHHHCCSSEEECSEEE-CGGGTCSCSCEEEEEECTTSCEEEEETT-----------------CSSEEE
T ss_pred             ECCCceEEEccccccccCCcceeccccc-ccccccccceeeeEEEcCCCCEEEEccC-----------------CCCcEE
Confidence            9888999999763      2221   11 1122333345778999999999993211                 257999


Q ss_pred             EeCCCCeEEEeccC-C---CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC----CceEeCCCC
Q 016318          220 YDPTTKQTTVLLRN-L---QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP----DNVRTNEKG  291 (391)
Q Consensus       220 ~d~~~~~~~~~~~~-~---~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p----~~i~~d~~G  291 (391)
                      ||+++++++.+... +   ..++.+..+.+|+ ||++. . +.|.+++.+.   ++.+.+. ..++|    .+|..+ +|
T Consensus       498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-lWigt-~-~Gl~~~~~~~---~~~~~~~-~~gl~~~~i~~i~~~-~g  569 (758)
T 3ott_A          498 INPRTREVTKLFADELTGEKSPNYLLCDEDGL-LWVGF-H-GGVMRINPKD---ESQQSIS-FGSFSNNEILSMTCV-KN  569 (758)
T ss_dssp             EETTTTEEEEECTTTSCGGGCEEEEEECTTSC-EEEEE-T-TEEEEECC-----CCCCBCC-CCC---CCEEEEEEE-TT
T ss_pred             EeCCCCceEEecCCCcCCCcccceEEECCCCC-EEEEe-c-CceEEEecCC---CceEEec-ccCCCccceEEEEEC-CC
Confidence            99999988876422 2   2456788888898 99984 3 5899998543   2333332 12333    345565 89


Q ss_pred             CEEEEEcCC
Q 016318          292 EFWVAIHCR  300 (391)
Q Consensus       292 ~lwva~~~~  300 (391)
                      ++|+++..+
T Consensus       570 ~lWi~t~~G  578 (758)
T 3ott_A          570 SIWVSTTNG  578 (758)
T ss_dssp             EEEEEESSC
T ss_pred             CEEEECCCC
Confidence            999998654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.46  E-value=7e-11  Score=109.84  Aligned_cols=188  Identities=9%  Similarity=-0.007  Sum_probs=121.1

Q ss_pred             ccCcceEEEccCCCeeEEEec-CCEEEEEeCCceeE-EEeecCCCcccCCCCCCccccccccCccCccce-EEEecCCCc
Q 016318           68 IQGPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTD-FAFTSNNRSELCNPKPIATSYLKNEHICGRPLG-LRFDKKTGD  144 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~g-i~~d~~~g~  144 (391)
                      ...| +++++++|+.+|++.. ++.|+.++...-.. ....                     .....|.. +++++++..
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~s~dg~~   97 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI---------------------QEGQSSMADVDITPDDQF   97 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE---------------------EECSSCCCCEEECTTSSE
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec---------------------ccCCCCccceEECCCCCE
Confidence            4456 9999999997777665 78999998862111 1110                     01345666 999984344


Q ss_pred             EEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCce-EEE
Q 016318          145 LYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGR-VLK  219 (391)
Q Consensus       145 L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~-l~~  219 (391)
                      ||++....   .|..+|.++++.......     ...+++++++++|+ +|+++..                 .+. +..
T Consensus        98 l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~-----------------~~~~i~~  155 (331)
T 3u4y_A           98 AVTVTGLNHPFNMQSYSFLKNKFISTIPI-----PYDAVGIAISPNGNGLILIDRS-----------------SANTVRR  155 (331)
T ss_dssp             EEECCCSSSSCEEEEEETTTTEEEEEEEC-----CTTEEEEEECTTSSCEEEEEET-----------------TTTEEEE
T ss_pred             EEEecCCCCcccEEEEECCCCCeEEEEEC-----CCCccceEECCCCCEEEEEecC-----------------CCceEEE
Confidence            66443332   599999988865443221     12468999999995 8888743                 234 444


Q ss_pred             EeCCC-CeE----EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcc-ceeecccCCCCCceEeCCCCC-
Q 016318          220 YDPTT-KQT----TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN-LEAFAILPGYPDNVRTNEKGE-  292 (391)
Q Consensus       220 ~d~~~-~~~----~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~-~~~~~~~~g~p~~i~~d~~G~-  292 (391)
                      |+.+. +..    .........|.+++++|||+++|++....+.|..++++..+.-+ ...+ .....|.+++++++|+ 
T Consensus       156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~  234 (331)
T 3u4y_A          156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV-GTNNLPGTIVVSRDGST  234 (331)
T ss_dssp             EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE-ECSSCCCCEEECTTSSE
T ss_pred             EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec-cCCCCCceEEECCCCCE
Confidence            44322 222    12223345689999999999999998888899999976432100 1112 2335789999999999 


Q ss_pred             EEEEEcCC
Q 016318          293 FWVAIHCR  300 (391)
Q Consensus       293 lwva~~~~  300 (391)
                      +|++....
T Consensus       235 l~v~~~~~  242 (331)
T 3u4y_A          235 VYVLTEST  242 (331)
T ss_dssp             EEEECSSE
T ss_pred             EEEEEcCC
Confidence            77765443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.42  E-value=1.8e-11  Score=116.17  Aligned_cols=176  Identities=11%  Similarity=0.157  Sum_probs=111.7

Q ss_pred             cccCcceEEEccCCCeeEEEecCCEEEEEeCC-cee-EEEeecCCCcccCCCCCCccccccccCccCccceEEEecC---
Q 016318           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK---  141 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~---  141 (391)
                      .+..|.+|+++++|+.+|++...|+|++++.+ ... .+....    .            ......+.|+||+++++   
T Consensus        16 ~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~----~------------v~~~g~~g~~gia~~pdf~~   79 (353)
T 2g8s_A           16 KLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVP----D------------VWAHGQGGLLDVVLAPDFAQ   79 (353)
T ss_dssp             EESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCC----C------------CCCSTTCSEEEEEECTTHHH
T ss_pred             CCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCc----c------------cccCCCCCceeEEECCCCCC
Confidence            47899999999999846677778999999866 221 111110    0            00111345899999984   


Q ss_pred             CCcEEEEECC--------CCeEEEeCCCC--e---eEEceeccCC--CcccCCcceeecCCCCEEEEeCCCcccchhhee
Q 016318          142 TGDLYIADAY--------FGLMKVGPEGG--L---ATSLATEAEG--VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       142 ~g~L~V~d~~--------~gl~~~d~~~g--~---~~~~~~~~~~--~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~  206 (391)
                      ++.|||++..        ..|.+++.+.+  .   .+.+......  .....+++|++++||+||++.......  ....
T Consensus        80 ~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~--~~~q  157 (353)
T 2g8s_A           80 SRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQR--PTAQ  157 (353)
T ss_dssp             HCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCG--GGGG
T ss_pred             CCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCC--CccC
Confidence            5899999754        23888876533  2   2333222221  123468899999999999997331110  0000


Q ss_pred             eecccCCCceEEEEeCCCC-------------eEEEeccCCCCcceEEEccCCCEEEEEeCCCC---eEEEE
Q 016318          207 LVFSAEDTGRVLKYDPTTK-------------QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG---RLHKY  262 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~~-------------~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~---~I~~~  262 (391)
                      +  .....|+|+|+++++.             ..+++..++..|.|++++++...||++|...+   .|.++
T Consensus       158 ~--~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i  227 (353)
T 2g8s_A          158 D--LDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIP  227 (353)
T ss_dssp             C--TTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECC
T ss_pred             C--CCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEe
Confidence            0  0123578999998754             34566677888999999994444999987643   45544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.42  E-value=1.1e-10  Score=109.49  Aligned_cols=200  Identities=14%  Similarity=0.102  Sum_probs=128.7

Q ss_pred             ccCcceEEEccCCCeeEEEe-cCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           68 IQGPESMAFDPLGRGPYTGV-ADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~-~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      ...|.+++++++|+.+|++. .++.|..|+.+   ....+......      +.++     ........|.++++++ +|
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~------~~~p-----~~~~~~~~~~~~~~sp-dg  152 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS------GHGP-----RPEQDGSHIHYTDLTP-DN  152 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC------CCCS-----STTCSSCCEEEEEECT-TS
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC------CCCC-----CccccCCCceEEEECC-CC
Confidence            45899999999999888887 56778777653   33333221110      0000     0001234688999999 66


Q ss_pred             cEEEEECCCC-eEEEeCC-CCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceE--E
Q 016318          144 DLYIADAYFG-LMKVGPE-GGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRV--L  218 (391)
Q Consensus       144 ~L~V~d~~~g-l~~~d~~-~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l--~  218 (391)
                      ++|+++...+ |..++.+ ++++...... .......|+++++++||+ +|+++..                 .+.+  +
T Consensus       153 ~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~-----------------~~~v~v~  214 (347)
T 3hfq_A          153 RLAVIDLGSDKVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGEL-----------------SSQIASL  214 (347)
T ss_dssp             CEEEEETTTTEEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEE
T ss_pred             cEEEEeCCCCEEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeCC-----------------CCEEEEE
Confidence            7999988755 7777776 5655543221 111123678899999997 8887743                 2444  4


Q ss_pred             EEeCCCCeEEEecc--C-------CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC---CCCCceE
Q 016318          219 KYDPTTKQTTVLLR--N-------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP---GYPDNVR  286 (391)
Q Consensus       219 ~~d~~~~~~~~~~~--~-------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~---g~p~~i~  286 (391)
                      .++..+++.+....  .       ...+.+++++|||++||++....+.|..++++..  ++.+.....+   ..|.+++
T Consensus       215 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~--g~~~~~~~~~~~~~~~~~~~  292 (347)
T 3hfq_A          215 KYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD--GHLTLIQQISTEGDFPRDFD  292 (347)
T ss_dssp             EEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG--GCEEEEEEEECSSSCCCEEE
T ss_pred             EecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC--CcEEEeEEEecCCCCcCeEE
Confidence            45554566543321  1       1347789999999999999887889999987632  2333333322   3689999


Q ss_pred             eCCCCC-EEEEEcC
Q 016318          287 TNEKGE-FWVAIHC  299 (391)
Q Consensus       287 ~d~~G~-lwva~~~  299 (391)
                      ++++|+ +|++...
T Consensus       293 ~spdg~~l~v~~~~  306 (347)
T 3hfq_A          293 LDPTEAFVVVVNQN  306 (347)
T ss_dssp             ECTTSSEEEEEETT
T ss_pred             ECCCCCEEEEEEcC
Confidence            999998 6776554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.41  E-value=2e-10  Score=106.76  Aligned_cols=194  Identities=14%  Similarity=0.209  Sum_probs=124.6

Q ss_pred             cCcceEEEccCCCeeEEEecC-CEEEEEeCC----ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           69 QGPESMAFDPLGRGPYTGVAD-GRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~-g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      ..|.+++++++|+.+|++..+ +.|..|+.+    ....+....                     ..+.|.++++++++.
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~s~dg~   96 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA---------------------LPGSLTHISTDHQGQ   96 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE---------------------CSSCCSEEEECTTSS
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc---------------------cCCCCcEEEEcCCCC
Confidence            479999999999988888876 888887543    333222110                     124788999999444


Q ss_pred             cEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          144 DLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       144 ~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      .||+++...+ |..++...+...........  ...+.+++++++|+ +|+++..                 ++.+..||
T Consensus        97 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d  157 (343)
T 1ri6_A           97 FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISPDNRTLWVPALK-----------------QDRICLFT  157 (343)
T ss_dssp             EEEEEETTTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEE
T ss_pred             EEEEEecCCCeEEEEECCCCccccccccccC--CCCceEEEECCCCCEEEEecCC-----------------CCEEEEEE
Confidence            5888887655 77777643322222222221  13588999999995 7777632                 46788888


Q ss_pred             CCC-CeEEEe------ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccce---eecccCC------CCCce
Q 016318          222 PTT-KQTTVL------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE---AFAILPG------YPDNV  285 (391)
Q Consensus       222 ~~~-~~~~~~------~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~---~~~~~~g------~p~~i  285 (391)
                      ..+ ++....      ......|++++++||++++|++....+.|..++++.. .++.+   .+...+.      .|..+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP-HGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT-TSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCcEEEEeeccccCccccccCCccce
Confidence            776 655321      1233478899999999999999877889999987532 12222   2222221      23469


Q ss_pred             EeCCCCC-EEEEEcCCCch
Q 016318          286 RTNEKGE-FWVAIHCRRSL  303 (391)
Q Consensus       286 ~~d~~G~-lwva~~~~~~~  303 (391)
                      +++++|+ +|++......+
T Consensus       237 ~~s~dg~~l~v~~~~~~~i  255 (343)
T 1ri6_A          237 HITPDGRHLYACDRTASLI  255 (343)
T ss_dssp             EECTTSSEEEEEETTTTEE
T ss_pred             EECCCCCEEEEEecCCCEE
Confidence            9999997 66665444433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.39  E-value=1.6e-10  Score=105.79  Aligned_cols=226  Identities=13%  Similarity=0.069  Sum_probs=146.9

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ..+.+++++++|+ +++ +.+++|+.++++. +.+......                   ....+.+..+.+ +|+++|+
T Consensus        37 ~~~~~~~~~pdG~-ilv-s~~~~V~~~d~~G-~~~W~~~~~-------------------~~~~~~~~~~~~-dG~~lv~   93 (276)
T 3no2_A           37 WECNSVAATKAGE-ILF-SYSKGAKMITRDG-RELWNIAAP-------------------AGCEMQTARILP-DGNALVA   93 (276)
T ss_dssp             CCCCEEEECTTSC-EEE-ECBSEEEEECTTS-CEEEEEECC-------------------TTCEEEEEEECT-TSCEEEE
T ss_pred             CCCcCeEECCCCC-EEE-eCCCCEEEECCCC-CEEEEEcCC-------------------CCccccccEECC-CCCEEEE
Confidence            3688999999999 555 5678899998861 111111000                   011244667777 7899998


Q ss_pred             ECC-CC-eEEEeCCCCeeEEceeccC-CCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          149 DAY-FG-LMKVGPEGGLATSLATEAE-GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       149 d~~-~g-l~~~d~~~g~~~~~~~~~~-~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      +.. .+ ++.+|+++..+..+..... ..+...+..++.+++|+++++++.                 +++|+.+|++.+
T Consensus        94 ~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----------------~~~v~~~d~~G~  156 (276)
T 3no2_A           94 WCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA-----------------TSEVREIAPNGQ  156 (276)
T ss_dssp             EESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT-----------------TTEEEEECTTSC
T ss_pred             ecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC-----------------CCEEEEECCCCC
Confidence            876 54 9999997765555432211 123456788899999999999854                 589999999844


Q ss_pred             eEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec-cccCccceeec--ccCC----CCCceEeCCCCCEEEEEc
Q 016318          226 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI-GEKAGNLEAFA--ILPG----YPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       226 ~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~-g~~~g~~~~~~--~~~g----~p~~i~~d~~G~lwva~~  298 (391)
                      ....+. ....|.+++..++++ ++++...+++|..++.+ |...   -.+.  ++++    .|.++.+.++|+++|+..
T Consensus       157 ~~w~~~-~~~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~---w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          157 LLNSVK-LSGTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIV---RRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEEE-CSSCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEE---EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEEE-CCCCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEE---EEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            333333 234678899999999 67777777899999866 4211   0111  1222    367889999999999976


Q ss_pred             CCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEE
Q 016318          299 CRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVE  369 (391)
Q Consensus       299 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~  369 (391)
                      .++....     +                       ....+.++++|++|+++..|.+..  .+..+|.++
T Consensus       232 ~g~~~~~-----~-----------------------~~~~~~~~~~~~~g~~~W~~~~~~--~~~~~~~~~  272 (276)
T 3no2_A          232 QGHDREA-----G-----------------------KGKHPQLVEIDSEGKVVWQLNDKV--KFGMISTIC  272 (276)
T ss_dssp             CTTCTTG-----G-----------------------GSCCCSEEEECTTSBEEEEECCTT--TSCCCCEEE
T ss_pred             cCccccc-----c-----------------------ccCCceEEEECCCCCEEEEecCcc--cccceeeee
Confidence            4422100     0                       001245888999999999997633  234566653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.39  E-value=2.9e-10  Score=107.35  Aligned_cols=191  Identities=13%  Similarity=0.162  Sum_probs=120.3

Q ss_pred             cccCcceEEEccCCCeeEEEecC----CEEEE--EeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318           67 QIQGPESMAFDPLGRGPYTGVAD----GRILF--WDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~----g~I~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~  138 (391)
                      ....|..++++++|+.+|++..+    +.|..  ++.+  ..+.+....                    .....|..+++
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~--------------------~~~~~p~~~~~  107 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK--------------------TMGADPCYLTT  107 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE--------------------CSSSCEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec--------------------cCCCCcEEEEE
Confidence            45689999999999989998875    67754  4543  233332211                    11356888888


Q ss_pred             ecCCCcEEEEECCCC-eEEEeCCC-CeeEEcee--ccCC-------CcccCCcceeecCCCC-EEEEeCCCcccchhhee
Q 016318          139 DKKTGDLYIADAYFG-LMKVGPEG-GLATSLAT--EAEG-------VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       139 d~~~g~L~V~d~~~g-l~~~d~~~-g~~~~~~~--~~~~-------~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~  206 (391)
                       . ++.||+++...+ +..++..+ +.+..+..  ...+       .....++.++++++|+ +|+++..          
T Consensus       108 -d-g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----------  175 (361)
T 3scy_A          108 -N-GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG----------  175 (361)
T ss_dssp             -C-SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT----------
T ss_pred             -C-CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC----------
Confidence             3 677999987655 77777653 33222211  0111       1123457799999997 8888743          


Q ss_pred             eecccCCCceEEEE--eCCCC----e-E-------EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccc
Q 016318          207 LVFSAEDTGRVLKY--DPTTK----Q-T-------TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNL  272 (391)
Q Consensus       207 ~~~~~~~~g~l~~~--d~~~~----~-~-------~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~  272 (391)
                             ++.+..|  +..++    + +       .........|++++++|||+++|++....+.|..++++.   ++.
T Consensus       176 -------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~---g~~  245 (361)
T 3scy_A          176 -------TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD---GML  245 (361)
T ss_dssp             -------TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET---TEE
T ss_pred             -------CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC---Cce
Confidence                   3455555  54443    2 2       122233457889999999999999987788999998763   222


Q ss_pred             eeecc---cC---CCCCceEeCCCCC-EEEEEcC
Q 016318          273 EAFAI---LP---GYPDNVRTNEKGE-FWVAIHC  299 (391)
Q Consensus       273 ~~~~~---~~---g~p~~i~~d~~G~-lwva~~~  299 (391)
                      +....   .+   ..|.+++++++|+ +|++...
T Consensus       246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred             EEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence            22222   22   1345899999998 6666554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.39  E-value=7.5e-10  Score=105.34  Aligned_cols=184  Identities=13%  Similarity=0.171  Sum_probs=130.8

Q ss_pred             cCcceEEEccCCCeeE-EEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           69 QGPESMAFDPLGRGPY-TGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly-~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ..|.+++++++|+.+| ++..++.|..|+....+......                     ....+.++++++++..||+
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~---------------------~~~~v~~~~~spdg~~l~~   90 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---------------------AGSSPQGVAVSPDGKQVYV   90 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---------------------CSSSEEEEEECTTSSEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE---------------------CCCCccceEECCCCCEEEE
Confidence            3588999999998665 55588999999876222221110                     1236889999985455888


Q ss_pred             EECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          148 ADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       148 ~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      +... ..|..+|..+++.......     ...+.+++++++|+ +|++.+.                 ++.|..||..++
T Consensus        91 ~~~~~~~v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~  148 (391)
T 1l0q_A           91 TNMASSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTK  148 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTT
T ss_pred             EECCCCEEEEEECCCCeEEEEEeC-----CCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCC
Confidence            8766 4499999998865543322     12468899999986 7677643                 578999999988


Q ss_pred             eEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEc
Q 016318          226 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIH  298 (391)
Q Consensus       226 ~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~  298 (391)
                      +..........+..++++||++.+|++....+.|+.+++...   +..........+.+++++++|+ +|++..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVKVEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECSSEEEEEEECTTSSEEEEEEE
T ss_pred             cEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEecCCCccceEECCCCCEEEEEec
Confidence            876665555678999999999989888887889999987542   2221122234567889999997 666553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.38  E-value=2.5e-11  Score=112.66  Aligned_cols=184  Identities=9%  Similarity=-0.014  Sum_probs=124.1

Q ss_pred             cCcceEEEccCCCeeEEEecC---CEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           69 QGPESMAFDPLGRGPYTGVAD---GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~---g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      ..|.+|+++++|+ +|++...   .+|++++..  .++.+....                     ....|.|++... ++
T Consensus        72 ~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~---------------------~~~~~~g~~~~~-~~  128 (306)
T 2p4o_A           72 GKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLP---------------------DAIFLNGITPLS-DT  128 (306)
T ss_dssp             SEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECT---------------------TCSCEEEEEESS-SS
T ss_pred             CCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCC---------------------CccccCcccccC-CC
Confidence            3689999999999 6666532   369998754  444443221                     134567888766 77


Q ss_pred             cEEEEECCCC-eEEEeCCCCeeEEc--eec----cCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCc
Q 016318          144 DLYIADAYFG-LMKVGPEGGLATSL--ATE----AEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       144 ~L~V~d~~~g-l~~~d~~~g~~~~~--~~~----~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      ++|++|...| |+++|+.+++.+..  ...    .....+..||+|  +++| .+|++++.                 ++
T Consensus       129 ~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~-----------------~~  189 (306)
T 2p4o_A          129 QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE-----------------KM  189 (306)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT-----------------TT
T ss_pred             cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC-----------------CC
Confidence            8999997655 99999987643322  110    111235678998  5555 79999965                 47


Q ss_pred             eEEEEeCCC-CeE---EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec--ccC-CCCCceEeC
Q 016318          216 RVLKYDPTT-KQT---TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILP-GYPDNVRTN  288 (391)
Q Consensus       216 ~l~~~d~~~-~~~---~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~--~~~-g~p~~i~~d  288 (391)
                      +|++|+.+. ++.   +.+. .+..|.|++++++|+ +||++..+++|.+++.+|    +.....  ..+ ..|.+++++
T Consensus       190 ~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G----~~~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          190 LLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR----STTIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             EEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC----CEEEEECGGGTCTTEEEEEEC
T ss_pred             EEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCC-EEEEeCCCCeEEEECCCC----CEEEEeecccccCCceEEEEe
Confidence            899998764 332   2222 246799999999998 899998889999998554    222221  233 468999998


Q ss_pred             ---CCC-CEEEEEcCC
Q 016318          289 ---EKG-EFWVAIHCR  300 (391)
Q Consensus       289 ---~~G-~lwva~~~~  300 (391)
                         +++ .+||+....
T Consensus       264 g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          264 QTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CSTTTTTEEEEEECTT
T ss_pred             cccCCCCEEEEECCCC
Confidence               674 599988753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.37  E-value=2.3e-11  Score=115.39  Aligned_cols=199  Identities=15%  Similarity=0.113  Sum_probs=121.2

Q ss_pred             ccCcceEEEccC---CCeeEEEecC------CEEEEEeCC--ce---eEEEeecCCCcccCCCCCCccccccccCccCcc
Q 016318           68 IQGPESMAFDPL---GRGPYTGVAD------GRILFWDGL--KW---TDFAFTSNNRSELCNPKPIATSYLKNEHICGRP  133 (391)
Q Consensus        68 ~~gPe~i~~d~~---G~~ly~~~~~------g~I~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P  133 (391)
                      ..+|.+|+++++   +..+|+....      ++|.+++.+  .+   +.+....+.                .......|
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~----------------~~~~~h~~  137 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPA----------------RPHGLHSG  137 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECC----------------CTTCCCCC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCC----------------CCCCCcCC
Confidence            569999999998   4447776552      789999755  11   112111000                00113457


Q ss_pred             ceEEEecCCCcEEEEECC--------------CCeEEEeCCCC-------------eeEEceeccCCCcccCCcceeecC
Q 016318          134 LGLRFDKKTGDLYIADAY--------------FGLMKVGPEGG-------------LATSLATEAEGVPLRFTNDLDIDD  186 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~--------------~gl~~~d~~~g-------------~~~~~~~~~~~~~~~~~~~l~~d~  186 (391)
                      .+|++++ +|.|||++..              ..|+++++++.             ..+.+..     .++.|+++++++
T Consensus       138 ~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~-----G~rnp~g~a~d~  211 (352)
T 2ism_A          138 GRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSL-----GHRNPQGLAWHP  211 (352)
T ss_dssp             CCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEE-----CCSEECCCEECT
T ss_pred             ceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEE-----cCCCcccEEEEC
Confidence            8999999 7899999642              23999998852             1111111     246799999999


Q ss_pred             -CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC--------------C--eEEEeccCCCCcceEEEccCCCEE
Q 016318          187 -EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT--------------K--QTTVLLRNLQFPNGLSLSKDKSFF  249 (391)
Q Consensus       187 -~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~--------------~--~~~~~~~~~~~~ngia~~~d~~~l  249 (391)
                       +|+||+++.+...-. +        .+...|.++.+..              +  ...........|.|+++ .+|+ +
T Consensus       212 ~~g~l~v~d~g~~~~~-~--------~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~-l  280 (352)
T 2ism_A          212 KTGELFSSEHGPSGEQ-G--------YGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGD-L  280 (352)
T ss_dssp             TTCCEEEEEECC---------------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTE-E
T ss_pred             CCCCEEEEEcCCCCCC-C--------CCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCE-E
Confidence             799999996532200 0        0001122222110              0  00011122346889999 4665 9


Q ss_pred             EEEeCCCCeEEEEEeccccC----ccceeecccCCCCCceEeCCCCCEEEEEcC
Q 016318          250 VFCEGSVGRLHKYWLIGEKA----GNLEAFAILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       250 ~v~et~~~~I~~~~~~g~~~----g~~~~~~~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      |+++..+++|+++++++...    ...+.+....+.|.+++++++|.+|+++..
T Consensus       281 ~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          281 YVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             EEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred             EEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence            99999999999999876431    122333332357899999999999999865

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.35  E-value=7.8e-10  Score=101.16  Aligned_cols=175  Identities=11%  Similarity=-0.028  Sum_probs=117.1

Q ss_pred             CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEEe
Q 016318           79 LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVG  158 (391)
Q Consensus        79 ~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d  158 (391)
                      .|++++++..+++|+.++.+.-+........                   ....++++.+++ +|+++++ ...+++.+|
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~-------------------~~~~~~~~~~~p-dG~ilvs-~~~~V~~~d   62 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE-------------------KGWECNSVAATK-AGEILFS-YSKGAKMIT   62 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECC-------------------TTCCCCEEEECT-TSCEEEE-CBSEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC-------------------ccCCCcCeEECC-CCCEEEe-CCCCEEEEC
Confidence            3567888899999999998521222111100                   013578889998 8899994 456799999


Q ss_pred             CCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec--cC---
Q 016318          159 PEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL--RN---  233 (391)
Q Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~---  233 (391)
                      +++..+..+... .   ....++....++|+++++++.                .+++++.+|++++.+..+.  ..   
T Consensus        63 ~~G~~~W~~~~~-~---~~~~~~~~~~~dG~~lv~~~~----------------~~~~v~~vd~~Gk~l~~~~~~~~~~~  122 (276)
T 3no2_A           63 RDGRELWNIAAP-A---GCEMQTARILPDGNALVAWCG----------------HPSTILEVNMKGEVLSKTEFETGIER  122 (276)
T ss_dssp             TTSCEEEEEECC-T---TCEEEEEEECTTSCEEEEEES----------------TTEEEEEECTTSCEEEEEEECCSCSS
T ss_pred             CCCCEEEEEcCC-C---CccccccEECCCCCEEEEecC----------------CCCEEEEEeCCCCEEEEEeccCCCCc
Confidence            954444444321 1   113456788899999999843                1468999998665544432  11   


Q ss_pred             -CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCceEeCCCCCEEEEEcCC
Q 016318          234 -LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       234 -~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                       ...+.+++..++|+ ++++...+++|..++.+|.     .++. ..++.|.++...++|+++++....
T Consensus       123 ~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~G~-----~~w~~~~~~~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          123 PHAQFRQINKNKKGN-YLVPLFATSEVREIAPNGQ-----LLNSVKLSGTPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             GGGSCSCCEECTTSC-EEEEETTTTEEEEECTTSC-----EEEEEECSSCCCEEEECTTSCEEEECBTT
T ss_pred             ccccccCceECCCCC-EEEEecCCCEEEEECCCCC-----EEEEEECCCCccceeEcCCCCEEEEeCCC
Confidence             23567889999999 6677788899999986652     1222 334568888999999999986553

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.32  E-value=6.2e-10  Score=105.65  Aligned_cols=191  Identities=13%  Similarity=0.123  Sum_probs=115.9

Q ss_pred             ccCcceEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ...|..++++++|+.+|++..+ .|..|+.+   +.......                     ...+.|.++++++ +|+
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~---------------------~~~g~~~~~~~sp-dg~   95 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH---------------------PIGGHPRANDADT-NTR   95 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE---------------------ECCSSGGGGCTTS-CCE
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe---------------------ecCCCCccEEECC-CCC
Confidence            4579999999999988988877 77777642   22111110                     0123477788888 566


Q ss_pred             -EE--EEE------C------CCC-eEEEeCC-CCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhhee
Q 016318          145 -LY--IAD------A------YFG-LMKVGPE-GGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       145 -L~--V~d------~------~~g-l~~~d~~-~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~  206 (391)
                       ||  +++      .      ..| +..++.+ .++...............+.+++++++|+ +|+++.+          
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~----------  165 (365)
T 1jof_A           96 AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT----------  165 (365)
T ss_dssp             EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT----------
T ss_pred             EEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC----------
Confidence             34  343      1      223 4445443 24332211111001124688999999996 7777743          


Q ss_pred             eecccCCCceEEEEeCC-CCeEEEec--c---CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccce----eec
Q 016318          207 LVFSAEDTGRVLKYDPT-TKQTTVLL--R---NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE----AFA  276 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~-~~~~~~~~--~---~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~----~~~  276 (391)
                             .+.|..|+.+ +++...+.  .   ....|.+++++|||+++|++....+.|..++++.. .++..    .+.
T Consensus       166 -------~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~  237 (365)
T 1jof_A          166 -------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFP  237 (365)
T ss_dssp             -------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEE
T ss_pred             -------CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEE
Confidence                   3578888876 67654321  1   14568999999999999999877778888776421 12221    122


Q ss_pred             ccC----C---------CCCceE-eCCCCC-EEEEEcC
Q 016318          277 ILP----G---------YPDNVR-TNEKGE-FWVAIHC  299 (391)
Q Consensus       277 ~~~----g---------~p~~i~-~d~~G~-lwva~~~  299 (391)
                      .+|    +         .|.+++ ++++|+ +|++...
T Consensus       238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             cCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            222    1         366799 999998 6766544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.32  E-value=1.4e-10  Score=108.56  Aligned_cols=181  Identities=16%  Similarity=0.166  Sum_probs=123.4

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      .|.+++++++|+ +|+++. .+|++++.+  .++.+....                  ......+|.++++|+ +|++|+
T Consensus        91 ~v~~i~~~~dg~-l~v~~~-~gl~~~d~~~g~~~~~~~~~------------------~~~~~~~~~~i~~d~-~G~l~v  149 (326)
T 2ghs_A           91 MGSALAKISDSK-QLIASD-DGLFLRDTATGVLTLHAELE------------------SDLPGNRSNDGRMHP-SGALWI  149 (326)
T ss_dssp             CEEEEEEEETTE-EEEEET-TEEEEEETTTCCEEEEECSS------------------TTCTTEEEEEEEECT-TSCEEE
T ss_pred             cceEEEEeCCCe-EEEEEC-CCEEEEECCCCcEEEEeeCC------------------CCCCCCCCCCEEECC-CCCEEE
Confidence            578899999998 777764 459999875  444332110                  001135688999998 789999


Q ss_pred             EECC-------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          148 ADAY-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       148 ~d~~-------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      ++..       .+|++++  +++++.+...     ...+++++++++|+ +|++++.                 .++|++
T Consensus       150 ~~~~~~~~~~~~~l~~~~--~g~~~~~~~~-----~~~~~~i~~s~dg~~lyv~~~~-----------------~~~I~~  205 (326)
T 2ghs_A          150 GTMGRKAETGAGSIYHVA--KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDTK-----------------VNRLMR  205 (326)
T ss_dssp             EEEETTCCTTCEEEEEEE--TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEETT-----------------TCEEEE
T ss_pred             EeCCCcCCCCceEEEEEe--CCcEEEeeCC-----CcccCCeEEcCCCCEEEEEECC-----------------CCEEEE
Confidence            9753       3599999  4666654322     23688999999995 8999854                 468999


Q ss_pred             EeCC--CC-eE---EEec---cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC-CCCceEeC-
Q 016318          220 YDPT--TK-QT---TVLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-YPDNVRTN-  288 (391)
Q Consensus       220 ~d~~--~~-~~---~~~~---~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g-~p~~i~~d-  288 (391)
                      |+.+  ++ +.   +.+.   .....|.+++++++|+ +|++....++|.+++.+|.   ....+ .++. .|.+++++ 
T Consensus       206 ~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~---~~~~i-~~~~~~~~~~af~g  280 (326)
T 2ghs_A          206 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGN---HIARY-EVPGKQTTCPAFIG  280 (326)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCC---EEEEE-ECSCSBEEEEEEES
T ss_pred             EEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCC---EEEEE-ECCCCCcEEEEEec
Confidence            9864  55 32   2221   2235689999999998 9999766789999986442   11222 2332 47788887 


Q ss_pred             CCCC-EEEEEcCC
Q 016318          289 EKGE-FWVAIHCR  300 (391)
Q Consensus       289 ~~G~-lwva~~~~  300 (391)
                      ++++ +|++....
T Consensus       281 ~d~~~L~vt~~~~  293 (326)
T 2ghs_A          281 PDASRLLVTSARE  293 (326)
T ss_dssp             TTSCEEEEEEBCT
T ss_pred             CCCCEEEEEecCC
Confidence            6654 99987664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.28  E-value=1.7e-09  Score=100.40  Aligned_cols=189  Identities=11%  Similarity=0.065  Sum_probs=119.4

Q ss_pred             EEccCCCeeE-EEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC-
Q 016318           75 AFDPLGRGPY-TGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF-  152 (391)
Q Consensus        75 ~~d~~G~~ly-~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~-  152 (391)
                      .++.+++.+| ++..++.|..++...-+......                    .....| ++++++++..||+++... 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT--------------------LGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE--------------------CCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE--------------------ccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            3444555445 55667899999876211111110                    012346 999998444599998754 


Q ss_pred             CeEEEeCCCCee-EEceeccCCCcccCCcc-eeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe
Q 016318          153 GLMKVGPEGGLA-TSLATEAEGVPLRFTND-LDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL  230 (391)
Q Consensus       153 gl~~~d~~~g~~-~~~~~~~~~~~~~~~~~-l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  230 (391)
                      .|+++|.++++. ......     ...+.. ++++++|+..++...              ....+.|..||.++++....
T Consensus        63 ~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~--------------~~~~~~i~v~d~~~~~~~~~  123 (331)
T 3u4y_A           63 TLVQIETQLEPPKVVAIQE-----GQSSMADVDITPDDQFAVTVTG--------------LNHPFNMQSYSFLKNKFIST  123 (331)
T ss_dssp             EEEEEECSSSSCEEEEEEE-----CSSCCCCEEECTTSSEEEECCC--------------SSSSCEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCceeEEeccc-----CCCCccceEECCCCCEEEEecC--------------CCCcccEEEEECCCCCeEEE
Confidence            599999998875 222221     124666 999999975444422              01112899999998887665


Q ss_pred             ccCCCCcceEEEccCCCEEEEEeCCCCe-EEEEEeccccC-ccc-eeecccCCCCCceEeCCCCC-EEEEEcCCCch
Q 016318          231 LRNLQFPNGLSLSKDKSFFVFCEGSVGR-LHKYWLIGEKA-GNL-EAFAILPGYPDNVRTNEKGE-FWVAIHCRRSL  303 (391)
Q Consensus       231 ~~~~~~~ngia~~~d~~~l~v~et~~~~-I~~~~~~g~~~-g~~-~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~  303 (391)
                      ......|++++++|||+++|+++...+. |+.|+++.... ... .........|.+++++++|+ +|++......+
T Consensus       124 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  200 (331)
T 3u4y_A          124 IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSI  200 (331)
T ss_dssp             EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeE
Confidence            5555678999999999989999877677 88888764211 001 11111223578999999998 88887654443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.26  E-value=9.2e-10  Score=104.39  Aligned_cols=157  Identities=15%  Similarity=0.145  Sum_probs=105.6

Q ss_pred             cCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceec-cCCCcccCCcceeecCC----CCEEEEeCC-Ccccchh
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATE-AEGVPLRFTNDLDIDDE----GNVYFTDSS-TNYQRRN  203 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~-~~~~~~~~~~~l~~d~~----G~ly~td~~-~~~~~~~  203 (391)
                      ...|.+|++++ +|+|||++....|++++.+ ++ +.+... ........+.+|+++++    |.||++.+. ..     
T Consensus        28 l~~P~~ia~~p-dG~l~V~e~~g~I~~~d~~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~-----   99 (354)
T 3a9g_A           28 LEVPWSIAPLG-GGRYLVTERPGRLVLISPS-GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE-----   99 (354)
T ss_dssp             CSCEEEEEEEE-TTEEEEEETTTEEEEECSS-CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG-----
T ss_pred             CCCCeEEEEcC-CCeEEEEeCCCEEEEEeCC-Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC-----
Confidence            56799999999 7999999988669999854 44 444321 11112346899999996    899999742 00     


Q ss_pred             heeeecccCCCceEEEEeCCCC-----eEEEec-----cCCCCcceEEEccCCCEEEEEeCC-------------CCeEE
Q 016318          204 FMQLVFSAEDTGRVLKYDPTTK-----QTTVLL-----RNLQFPNGLSLSKDKSFFVFCEGS-------------VGRLH  260 (391)
Q Consensus       204 ~~~~~~~~~~~g~l~~~d~~~~-----~~~~~~-----~~~~~~ngia~~~d~~~l~v~et~-------------~~~I~  260 (391)
                            ......+|.+++.+++     ..+++.     .....+++++++|||. ||++...             .++|+
T Consensus       100 ------~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~  172 (354)
T 3a9g_A          100 ------GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKIL  172 (354)
T ss_dssp             ------GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEE
T ss_pred             ------CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEE
Confidence                  0011257888887654     123332     2245789999999997 9998532             35899


Q ss_pred             EEEeccccC-c----cceeecccCCCCCceEeCC-CCCEEEEEcCCC
Q 016318          261 KYWLIGEKA-G----NLEAFAILPGYPDNVRTNE-KGEFWVAIHCRR  301 (391)
Q Consensus       261 ~~~~~g~~~-g----~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~  301 (391)
                      |++.+|.-. +    ..++++.--..|.+|++|+ +|++|++.....
T Consensus       173 ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~  219 (354)
T 3a9g_A          173 RVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPV  219 (354)
T ss_dssp             EECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSS
T ss_pred             EEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCC
Confidence            998876310 0    2355553223589999999 899999987653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.26  E-value=6.3e-09  Score=100.28  Aligned_cols=192  Identities=10%  Similarity=0.089  Sum_probs=128.7

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      ...+++++++|++++++..++.|..|+.+..+......                    .....|.++++++++..+|++.
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~~~  230 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD--------------------LTGKWSKILLYDPIRDLVYCSN  230 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE--------------------CSSSSEEEEEEETTTTEEEEEE
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc--------------------CCCCCeeEEEEcCCCCEEEEEe
Confidence            34568898899977888889999999876222221110                    1135678999998545577887


Q ss_pred             CCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          150 AYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       150 ~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ...+ |..+|..+++.......     ...+.+++++++|+ +|++......          ....+|.|..||..+++.
T Consensus       231 ~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~----------~~~~dg~i~~~d~~~~~~  295 (433)
T 3bws_A          231 WISEDISVIDRKTKLEIRKTDK-----IGLPRGLLLSKDGKELYIAQFSASN----------QESGGGRLGIYSMDKEKL  295 (433)
T ss_dssp             TTTTEEEEEETTTTEEEEECCC-----CSEEEEEEECTTSSEEEEEEEESCT----------TCSCCEEEEEEETTTTEE
T ss_pred             cCCCcEEEEECCCCcEEEEecC-----CCCceEEEEcCCCCEEEEEECCCCc----------cccCCCeEEEEECCCCcE
Confidence            5544 99999988765432211     12478899999985 5555421000          001357899999988876


Q ss_pred             EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEcC
Q 016318          228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHC  299 (391)
Q Consensus       228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~~  299 (391)
                      .........+.+++++|+++.+|++....+.|..+++...   +..........+.+++++++|+ +|++...
T Consensus       296 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  365 (433)
T 3bws_A          296 IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIPVFDKPNTIALSPDGKYLYVSCRG  365 (433)
T ss_dssp             EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEECSSSEEEEEECTTSSEEEEEECC
T ss_pred             EeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEecCCCCCCeEEEcCCCCEEEEEecC
Confidence            5554333477899999999989999888899999987642   2111112334577899999998 6666554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.26  E-value=7.3e-10  Score=102.86  Aligned_cols=175  Identities=13%  Similarity=0.116  Sum_probs=116.8

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~  151 (391)
                      .+++++++|+ +|+++.+++|++++.+. ........                    .......+.++. +++||++.  
T Consensus       140 ~~~~~~~~g~-l~vgt~~~~l~~~d~~g-~~~~~~~~--------------------~~~~~~~~~~d~-~g~l~v~t--  194 (330)
T 3hxj_A          140 ATPIVSEDGT-IYVGSNDNYLYAINPDG-TEKWRFKT--------------------NDAITSAASIGK-DGTIYFGS--  194 (330)
T ss_dssp             SCCEECTTSC-EEEECTTSEEEEECTTS-CEEEEEEC--------------------SSCCCSCCEECT-TCCEEEES--
T ss_pred             eeeEEcCCCE-EEEEcCCCEEEEECCCC-CEeEEEec--------------------CCCceeeeEEcC-CCEEEEEe--
Confidence            4568888888 99999999999998871 11111100                    012233456776 78999998  


Q ss_pred             CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318          152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       152 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  231 (391)
                      .+|+++|..+.....+.  ..   ......++++++|+||+++..                  ++|+++|+++.......
T Consensus       195 ~~l~~~d~~g~~~~~~~--~~---~~~~~~~~~~~~g~l~v~t~~------------------~gl~~~~~~g~~~~~~~  251 (330)
T 3hxj_A          195 DKVYAINPDGTEKWNFY--AG---YWTVTRPAISEDGTIYVTSLD------------------GHLYAINPDGTEKWRFK  251 (330)
T ss_dssp             SSEEEECTTSCEEEEEC--CS---SCCCSCCEECTTSCEEEEETT------------------TEEEEECTTSCEEEEEE
T ss_pred             CEEEEECCCCcEEEEEc--cC---CcceeceEECCCCeEEEEcCC------------------CeEEEECCCCCEeEEee
Confidence            78999995433322221  11   135778899999999999853                  68999997666655544


Q ss_pred             cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC-CCCCceEeCCCCCEEEEEcCC
Q 016318          232 RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP-GYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       232 ~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~-g~p~~i~~d~~G~lwva~~~~  300 (391)
                      ........++++++++ ||++ +.++.|++++.+|    +......++ .....+..|.+|++|+++..+
T Consensus       252 ~~~~~~~~~~~~~~g~-l~v~-t~~ggl~~~d~~g----~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G  315 (330)
T 3hxj_A          252 TGKRIESSPVIGNTDT-IYFG-SYDGHLYAINPDG----TEKWNFETGSWIIATPVIDENGTIYFGTRNG  315 (330)
T ss_dssp             CSSCCCSCCEECTTSC-EEEE-CTTCEEEEECTTS----CEEEEEECSSCCCSCCEECTTCCEEEECTTS
T ss_pred             CCCCccccceEcCCCe-EEEe-cCCCCEEEECCCC----cEEEEEEcCCccccceEEcCCCEEEEEcCCC
Confidence            4434456677877787 9988 5567899997433    221111232 235568899999999998775

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.25  E-value=9.2e-10  Score=102.21  Aligned_cols=191  Identities=9%  Similarity=0.076  Sum_probs=123.0

Q ss_pred             CcceEEEccCCCeeEEEec-CCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           70 GPESMAFDPLGRGPYTGVA-DGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      .|.+++++++|+.+|++.. ++.|..|+.+   ........                     .....|.++++++++..|
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------------~~~~~~~~~~~s~dg~~l  143 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV---------------------EGLDGCHSANISPDNRTL  143 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE---------------------CCCTTBCCCEECTTSSEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc---------------------cCCCCceEEEECCCCCEE
Confidence            7999999999997777765 7778888662   11111111                     113457889999844468


Q ss_pred             EEEECC-CCeEEEeCCC-CeeEEcee-ccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          146 YIADAY-FGLMKVGPEG-GLATSLAT-EAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       146 ~V~d~~-~gl~~~d~~~-g~~~~~~~-~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      |+++.. ..|..++..+ ++++.... .........+++++++++|+ +|+++..                 ++.+..|+
T Consensus       144 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----------------~~~i~~~~  206 (343)
T 1ri6_A          144 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----------------NSSVDVWE  206 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEE
T ss_pred             EEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEE
Confidence            998844 4588888876 65543320 11111123678899999997 7787743                 46777777


Q ss_pred             C--CCCeEEEec--c----C---CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCCCCCceEeC
Q 016318          222 P--TTKQTTVLL--R----N---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVRTN  288 (391)
Q Consensus       222 ~--~~~~~~~~~--~----~---~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g~p~~i~~d  288 (391)
                      .  .+++.....  .    .   ...+.+++++||++++|++....+.|..++++.. .++.+....  ..+.|.+++++
T Consensus       207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~s  285 (343)
T 1ri6_A          207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED-GSVLSKEGFQPTETQPRGFNVD  285 (343)
T ss_dssp             SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SCCEEEEEEEECSSSCCCEEEC
T ss_pred             ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC-CCceEEeeeecCCCccceEEEC
Confidence            6  345432211  1    1   2245579999999999999877889999987621 122233322  23458999999


Q ss_pred             CCCC-EEEEEcC
Q 016318          289 EKGE-FWVAIHC  299 (391)
Q Consensus       289 ~~G~-lwva~~~  299 (391)
                      ++|+ +|++...
T Consensus       286 ~dg~~l~~~~~~  297 (343)
T 1ri6_A          286 HSGKYLIAAGQK  297 (343)
T ss_dssp             TTSSEEEEECTT
T ss_pred             CCCCEEEEecCC
Confidence            9998 6665533

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.23  E-value=3.9e-09  Score=101.77  Aligned_cols=196  Identities=17%  Similarity=0.141  Sum_probs=128.6

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .|.++++++++.+++++..++.|..|+....+........               ......+.+.++++++ ++++|++.
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---------------~~~~~~~~v~~~~~~~-~~~~~~s~  187 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPE---------------KYKKKLGFVETISIPE-HNELWVSQ  187 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCH---------------HHHTTCCEEEEEEEGG-GTEEEEEE
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcc---------------cccccCCceeEEEEcC-CCEEEEEE
Confidence            5778999997775555566778999987622222111000               0111234567889987 78898887


Q ss_pred             CCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          150 AYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       150 ~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ...+ |..+|.++++.......    ....+..++++++|+ +|++.+.                 ++.|..||..+++.
T Consensus       188 ~~d~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~i~~~d~~~~~~  246 (433)
T 3bws_A          188 MQANAVHVFDLKTLAYKATVDL----TGKWSKILLYDPIRDLVYCSNWI-----------------SEDISVIDRKTKLE  246 (433)
T ss_dssp             GGGTEEEEEETTTCCEEEEEEC----SSSSEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTTTEE
T ss_pred             CCCCEEEEEECCCceEEEEEcC----CCCCeeEEEEcCCCCEEEEEecC-----------------CCcEEEEECCCCcE
Confidence            7644 89999887654432221    123578899999986 5566533                 47899999988877


Q ss_pred             EEeccCCCCcceEEEccCCCEEEEEeC-------CCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEcC
Q 016318          228 TVLLRNLQFPNGLSLSKDKSFFVFCEG-------SVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHC  299 (391)
Q Consensus       228 ~~~~~~~~~~ngia~~~d~~~l~v~et-------~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~~  299 (391)
                      .........+.+++++|+++.++++..       ..+.|+.+++...   +.......++.+.+++++++|+ +|++...
T Consensus       247 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~  323 (433)
T 3bws_A          247 IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE---KLIDTIGPPGNKRHIVSGNTENKIYVSDMC  323 (433)
T ss_dssp             EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT---EEEEEEEEEECEEEEEECSSTTEEEEEETT
T ss_pred             EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC---cEEeeccCCCCcceEEECCCCCEEEEEecC
Confidence            665555556889999999998888864       3457888886542   2211122244677899999996 7777555


Q ss_pred             CCchhh
Q 016318          300 RRSLYS  305 (391)
Q Consensus       300 ~~~~~~  305 (391)
                      ...+..
T Consensus       324 ~~~v~v  329 (433)
T 3bws_A          324 CSKIEV  329 (433)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            544433

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.21  E-value=1.2e-08  Score=96.80  Aligned_cols=176  Identities=14%  Similarity=0.162  Sum_probs=121.0

Q ss_pred             eeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC-eEEEeCC
Q 016318           82 GPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPE  160 (391)
Q Consensus        82 ~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~  160 (391)
                      ++.++..++.|..|+....+......                     ....|.++++++++..||++....+ |..+|..
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~---------------------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~   62 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIP---------------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEE---------------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEee---------------------cCCCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence            45667788999999876322221110                     1245789999984445777765544 9999998


Q ss_pred             CCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcce
Q 016318          161 GGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNG  239 (391)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng  239 (391)
                      +++........     ..++.++++++|+ +|++.+.                 ++.|..||.++++..........+.+
T Consensus        63 ~~~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~-----------------~~~v~v~d~~~~~~~~~~~~~~~~~~  120 (391)
T 1l0q_A           63 TNNVIATVPAG-----SSPQGVAVSPDGKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLG  120 (391)
T ss_dssp             TTEEEEEEECS-----SSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             CCeEEEEEECC-----CCccceEECCCCCEEEEEECC-----------------CCEEEEEECCCCeEEEEEeCCCCcce
Confidence            88765433221     1678999999986 7777643                 47899999999887666655567899


Q ss_pred             EEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEcCCCch
Q 016318          240 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCRRSL  303 (391)
Q Consensus       240 ia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~  303 (391)
                      +++++|++.+|++....+.|+.+++...   +..........|..++++++|+ +|++......+
T Consensus       121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v  182 (391)
T 1l0q_A          121 LALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI  182 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEecCCCcceEEECCCCCEEEEEeCCCCEE
Confidence            9999999999888888889999986542   2211112224567899999997 56665554443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.20  E-value=2.9e-09  Score=96.29  Aligned_cols=185  Identities=10%  Similarity=0.011  Sum_probs=120.9

Q ss_pred             cccccCcceEEEccCCCeeEEEec---CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVA---DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~---~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~  141 (391)
                      -+.-..|++++++++|. +|.++.   ++.|.++|...-+......                  . ...-.+.|++++  
T Consensus        17 ~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~------------------l-~~~~fgeGi~~~--   74 (266)
T 2iwa_A           17 HDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK------------------M-DDSYFGEGLTLL--   74 (266)
T ss_dssp             CCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE------------------C-CTTCCEEEEEEE--
T ss_pred             CCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe------------------c-CCCcceEEEEEe--
Confidence            34334689999998875 888764   4799999987322222211                  0 001234567776  


Q ss_pred             CCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          142 TGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       142 ~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      +++||++++..+ ++++|+++.++..-..  .+    .+.+..+.+|| .+|+++.                  ++.|..
T Consensus        75 g~~lyv~t~~~~~v~viD~~t~~v~~~i~--~g----~~~g~glt~Dg~~l~vs~g------------------s~~l~v  130 (266)
T 2iwa_A           75 NEKLYQVVWLKNIGFIYDRRTLSNIKNFT--HQ----MKDGWGLATDGKILYGSDG------------------TSILYE  130 (266)
T ss_dssp             TTEEEEEETTCSEEEEEETTTTEEEEEEE--CC----SSSCCEEEECSSSEEEECS------------------SSEEEE
T ss_pred             CCEEEEEEecCCEEEEEECCCCcEEEEEE--CC----CCCeEEEEECCCEEEEECC------------------CCeEEE
Confidence            579999998866 9999999875432111  11    13444455555 7999873                  379999


Q ss_pred             EeCCCCeEEEecc------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC--------------
Q 016318          220 YDPTTKQTTVLLR------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP--------------  279 (391)
Q Consensus       220 ~d~~~~~~~~~~~------~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~--------------  279 (391)
                      +|+++.+...-..      ....+|++.+. |++ +|++....+.|.+++.+.   ++..-..+++              
T Consensus       131 iD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~t---g~V~~~I~~~g~~~~~~~~~~~~~  205 (266)
T 2iwa_A          131 IDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKD---GTLLGWILLPNLRKKLIDEGFRDI  205 (266)
T ss_dssp             ECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTT---CCEEEEEECHHHHHHHHHTTCTTC
T ss_pred             EECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCC---CcEEEEEECCCccccccccccccc
Confidence            9999876433221      23468999887 774 999988889999999654   2222111221              


Q ss_pred             CCCCceEeCCCCC-EEEEEcCC
Q 016318          280 GYPDNVRTNEKGE-FWVAIHCR  300 (391)
Q Consensus       280 g~p~~i~~d~~G~-lwva~~~~  300 (391)
                      ..|.+|+.+++|+ +||+....
T Consensus       206 ~v~nGIa~~~~~~~lfVTgk~~  227 (266)
T 2iwa_A          206 DVLNGIAWDQENKRIFVTGKLW  227 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEETTC
T ss_pred             CceEEEEEcCCCCEEEEECCCC
Confidence            2467999999886 88886553

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.19  E-value=4.4e-09  Score=98.78  Aligned_cols=154  Identities=16%  Similarity=0.154  Sum_probs=105.6

Q ss_pred             cCccceEEEecCCCcEEEEECCC-CeEEEeCCCCeeEEceec--cCCCcccCCcceeecC----CCCEEEEeCCCcccch
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYF-GLMKVGPEGGLATSLATE--AEGVPLRFTNDLDIDD----EGNVYFTDSSTNYQRR  202 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~-gl~~~d~~~g~~~~~~~~--~~~~~~~~~~~l~~d~----~G~ly~td~~~~~~~~  202 (391)
                      ...|.+|++.+ +|+|||+.... .|+++++++++.+.+...  ........+.+|++++    +|.||++.+.      
T Consensus        31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~------  103 (347)
T 3das_A           31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS------  103 (347)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC------
T ss_pred             CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec------
Confidence            57899999999 79999999744 499999877766544321  1111235688999998    4899997532      


Q ss_pred             hheeeecccCCCceEEEEeCCCC--------eEEEecc-----CCCCcceEEEccCCCEEEEEeC-------------CC
Q 016318          203 NFMQLVFSAEDTGRVLKYDPTTK--------QTTVLLR-----NLQFPNGLSLSKDKSFFVFCEG-------------SV  256 (391)
Q Consensus       203 ~~~~~~~~~~~~g~l~~~d~~~~--------~~~~~~~-----~~~~~ngia~~~d~~~l~v~et-------------~~  256 (391)
                               ...++|.||....+        +.+++..     ...+.+.|+++|||. |||+..             ..
T Consensus       104 ---------~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~  173 (347)
T 3das_A          104 ---------ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLG  173 (347)
T ss_dssp             ---------SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCST
T ss_pred             ---------CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCC
Confidence                     12468888865541        2333332     234567799999997 999842             35


Q ss_pred             CeEEEEEeccccC-----ccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318          257 GRLHKYWLIGEKA-----GNLEAFAILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       257 ~~I~~~~~~g~~~-----g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      ++|+|++.+|...     ...++|+.--..|.+|++|++|.+|++.+..
T Consensus       174 G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~  222 (347)
T 3das_A          174 GKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQ  222 (347)
T ss_dssp             TCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCS
T ss_pred             CEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCC
Confidence            7999999887410     1235555311248899999999999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.18  E-value=6.3e-09  Score=104.37  Aligned_cols=188  Identities=14%  Similarity=0.083  Sum_probs=123.7

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeC--CceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEec----CCC
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDG--LKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK----KTG  143 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~----~~g  143 (391)
                      .|.+++++++|+.+|++..++.|..|+.  ...+.....                     ..+..|.+++|++    ++.
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i---------------------~~g~~p~~va~sp~~~~dg~  238 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI---------------------KIGIEARSVESSKFKGYEDR  238 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE---------------------ECCSEEEEEEECCSTTCTTT
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE---------------------ecCCCcceEEeCCCcCCCCC
Confidence            3889999999999999999999999998  432222211                     1245689999998    778


Q ss_pred             cEEEEECC-CCeEEEeCCCCeeEEceec----cCCC---cccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCC
Q 016318          144 DLYIADAY-FGLMKVGPEGGLATSLATE----AEGV---PLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       144 ~L~V~d~~-~gl~~~d~~~g~~~~~~~~----~~~~---~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      .||+++.. ..|..+|..+++.......    .++.   +...+..+++++++. +|++..                 .+
T Consensus       239 ~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~-----------------~~  301 (543)
T 1nir_A          239 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------------ET  301 (543)
T ss_dssp             EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------------TT
T ss_pred             EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC-----------------CC
Confidence            89999865 4588899888764432221    1110   112466788888765 555543                 25


Q ss_pred             ceEEEEeCCCCeEEE--eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC--CC-CceE-eC
Q 016318          215 GRVLKYDPTTKQTTV--LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG--YP-DNVR-TN  288 (391)
Q Consensus       215 g~l~~~d~~~~~~~~--~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g--~p-~~i~-~d  288 (391)
                      +.|..+|..+.+...  ......+|.+++++||++++|++....+.|..++.+.   ++.........  .| .++. .+
T Consensus       302 g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t---g~l~~~i~~g~~ph~g~g~~~~~  378 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD---RRLSALVDVGKTPHPGRGANFVH  378 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECSSSBCCTTCEEEEE
T ss_pred             CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC---CeEEEeeccCCCCCCCCCcccCC
Confidence            789999987653211  1233467999999999999999987788999998654   22211111111  12 2333 35


Q ss_pred             CC-CCEEEEEc
Q 016318          289 EK-GEFWVAIH  298 (391)
Q Consensus       289 ~~-G~lwva~~  298 (391)
                      ++ |.+|++..
T Consensus       379 p~~g~~~~s~~  389 (543)
T 1nir_A          379 PKYGPVWSTSH  389 (543)
T ss_dssp             TTTEEEEEEEB
T ss_pred             CCCccEEEecc
Confidence            65 67888765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.17  E-value=1.7e-09  Score=99.95  Aligned_cols=164  Identities=10%  Similarity=0.080  Sum_probs=110.8

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEcee-ccC--CCcccCCcceee---cCCCCEEEE-eCCCcccc
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLAT-EAE--GVPLRFTNDLDI---DDEGNVYFT-DSSTNYQR  201 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~-~~~--~~~~~~~~~l~~---d~~G~ly~t-d~~~~~~~  201 (391)
                      ...|-++++|+.++.+|+++.+.| |.++++.++..+.+.. ...  +.+...+.+|.+   |++|.||+. +.+..|..
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            567889999976889999998866 9999998765554421 111  334456789999   789999994 43222211


Q ss_pred             hhheeeecccCCCceEEEEeCC---CCeEEEecc--------------CCCCcceEEEccCCCEEEEEeCCC-CeEEEEE
Q 016318          202 RNFMQLVFSAEDTGRVLKYDPT---TKQTTVLLR--------------NLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYW  263 (391)
Q Consensus       202 ~~~~~~~~~~~~~g~l~~~d~~---~~~~~~~~~--------------~~~~~ngia~~~d~~~l~v~et~~-~~I~~~~  263 (391)
                      .     -....+...|++||..   +++.....+              ....+|+++++++|+ +||+++.. ..|+|++
T Consensus        92 ~-----g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           92 A-----DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVS  165 (334)
T ss_dssp             T-----SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEEC
T ss_pred             c-----ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEe
Confidence            0     0011235679999988   665433221              223589999999999 99999999 9999999


Q ss_pred             eccccCccceeec-ccC-----CCCCceEeCCCCCEEEEEcCCCc
Q 016318          264 LIGEKAGNLEAFA-ILP-----GYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       264 ~~g~~~g~~~~~~-~~~-----g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      .+|..   ...|. ..|     -.++||+..++|+++++....+.
T Consensus       166 pdG~~---~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~  207 (334)
T 2p9w_A          166 ADGKT---VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA  207 (334)
T ss_dssp             TTSCC---EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS
T ss_pred             CCCCE---EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe
Confidence            87742   23332 111     13779999999997766555444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.17  E-value=9.1e-09  Score=95.13  Aligned_cols=184  Identities=14%  Similarity=0.022  Sum_probs=116.4

Q ss_pred             CcceEEEccCCCeeEEEe-cCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           70 GPESMAFDPLGRGPYTGV-ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      .|.+++++++|+.+|++. .++.|..++....+........               ........|.++++++++..||++
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~s~dg~~l~~~   99 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS---------------TPEERVKSLFGAALSPDGKTLAIY   99 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC---------------BTTEEEECTTCEEECTTSSEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC---------------CcccccccccceEECCCCCEEEEE
Confidence            499999999997666654 5689999987622222111000               000001268899999854578998


Q ss_pred             E------------CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCc
Q 016318          149 D------------AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       149 d------------~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      +            ....|..+|.++++.......  +   ..+.+++++++|+ +|+++                    +
T Consensus       100 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~s~dg~~l~~~~--------------------~  154 (337)
T 1pby_B          100 ESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--P---RQITMLAWARDGSKLYGLG--------------------R  154 (337)
T ss_dssp             EEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--C---SSCCCEEECTTSSCEEEES--------------------S
T ss_pred             ecccccccccccccCceEEEEECCCCcEEEEEeC--C---CCcceeEECCCCCEEEEeC--------------------C
Confidence            6            235699999988765433221  1   2578899999996 77773                    5


Q ss_pred             eEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCC-----------------------eEEEEEeccccCccc
Q 016318          216 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG-----------------------RLHKYWLIGEKAGNL  272 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~-----------------------~I~~~~~~g~~~g~~  272 (391)
                      .+..+|.++++..........+..++++||++.+|++....+                       .|+.+++...   +.
T Consensus       155 ~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~  231 (337)
T 1pby_B          155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG---EM  231 (337)
T ss_dssp             SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC---CE
T ss_pred             eEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC---Cc
Confidence            799999998877554433332345578999988887754444                       3566665432   22


Q ss_pred             ee--ecccCCCCCceEeCCCCC-EEEE
Q 016318          273 EA--FAILPGYPDNVRTNEKGE-FWVA  296 (391)
Q Consensus       273 ~~--~~~~~g~p~~i~~d~~G~-lwva  296 (391)
                      ..  +......|.+++++++|+ +|++
T Consensus       232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~  258 (337)
T 1pby_B          232 AMREVRIMDVFYFSTAVNPAKTRAFGA  258 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             eEeecCCCCCceeeEEECCCCCEEEEe
Confidence            21  111223567799999998 5665

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.16  E-value=8e-10  Score=108.23  Aligned_cols=180  Identities=12%  Similarity=0.162  Sum_probs=114.5

Q ss_pred             ceeccccccCcceEEEccCCCeeEEEecCC-EEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEE
Q 016318           61 EIKFLNQIQGPESMAFDPLGRGPYTGVADG-RILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (391)
Q Consensus        61 ~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g-~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~  137 (391)
                      +.+.. .+..|.+|+++++|+ +|++...| +|++++..  ....+......   .+           .....+-++||+
T Consensus        20 ~~~a~-~l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~---~~-----------~~~g~~Gllgia   83 (454)
T 1cru_A           20 KVILS-NLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEI---VN-----------DADGQNGLLGFA   83 (454)
T ss_dssp             EEEEC-CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTC---CC-----------CTTSSCSEEEEE
T ss_pred             EEEEC-CCCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCcc---cc-----------ccCCCCceeEEE
Confidence            34433 478999999999999 77777765 79999764  34444332210   00           001135588999


Q ss_pred             EecC---CCcEEEEECC-------------CCeEEEeCCC--Ce---eEEceeccCCCcccCCcceeecCCCCEEEEeCC
Q 016318          138 FDKK---TGDLYIADAY-------------FGLMKVGPEG--GL---ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS  196 (391)
Q Consensus       138 ~d~~---~g~L~V~d~~-------------~gl~~~d~~~--g~---~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~  196 (391)
                      ++++   ++.|||+...             ..|++++.+.  +.   .+.+..........+++.|++++||+||++...
T Consensus        84 ~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A           84 FHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             ECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            9985   6889999853             3488887543  22   233333222223457899999999999999632


Q ss_pred             Ccccc-hh-hee-------------eecccCCCceEEEEeCCCC-----------eEEEeccCCCCcceEEEccCCCEEE
Q 016318          197 TNYQR-RN-FMQ-------------LVFSAEDTGRVLKYDPTTK-----------QTTVLLRNLQFPNGLSLSKDKSFFV  250 (391)
Q Consensus       197 ~~~~~-~~-~~~-------------~~~~~~~~g~l~~~d~~~~-----------~~~~~~~~~~~~ngia~~~d~~~l~  250 (391)
                      ..... .+ +..             ..-.....|+|+|+++++.           ..+++..++..|.|++++++|+ ||
T Consensus       164 ~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~  242 (454)
T 1cru_A          164 QGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LL  242 (454)
T ss_dssp             TTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EE
T ss_pred             CCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EE
Confidence            11100 00 000             0000123589999999765           4567778889999999999887 99


Q ss_pred             EEeCCCC
Q 016318          251 FCEGSVG  257 (391)
Q Consensus       251 v~et~~~  257 (391)
                      ++|....
T Consensus       243 ~~d~g~~  249 (454)
T 1cru_A          243 QSEQGPN  249 (454)
T ss_dssp             EEEECSS
T ss_pred             EEecCCC
Confidence            9987543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.15  E-value=1.2e-08  Score=91.65  Aligned_cols=190  Identities=11%  Similarity=0.100  Sum_probs=124.4

Q ss_pred             cCcceEEEccCCCeeEE-EecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           69 QGPESMAFDPLGRGPYT-GVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~-~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ..+.+++++++++.+|+ ...+++|++++.+. .......                   ...+..+-||+++. ++.+||
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~v~~~i~-------------------l~g~~D~EGIa~~~-~g~~~v   85 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-DLIRTIP-------------------LDFVKDLETIEYIG-DNQFVI   85 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETTC-CEEEEEE-------------------CSSCSSEEEEEECS-TTEEEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-CEEEEEe-------------------cCCCCChHHeEEeC-CCEEEE
Confidence            46889999998777886 66678999999871 1111110                   01246788999997 788999


Q ss_pred             EECCC-CeEEEeCCC-CeeEEcee---cc-CCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          148 ADAYF-GLMKVGPEG-GLATSLAT---EA-EGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       148 ~d~~~-gl~~~d~~~-g~~~~~~~---~~-~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      ++... .++.++... +.+..+..   .. ....-....+|+.|+++ ++|++...                ...+|+.+
T Consensus        86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~----------------~p~~i~~~  149 (255)
T 3qqz_A           86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK----------------NPIEVYKV  149 (255)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES----------------SSEEEEEE
T ss_pred             EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc----------------CCceEEEE
Confidence            98664 466665432 22222211   11 11223356899999976 79998633                12368888


Q ss_pred             e--CCCCeEEEecc-------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC-C---------C
Q 016318          221 D--PTTKQTTVLLR-------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP-G---------Y  281 (391)
Q Consensus       221 d--~~~~~~~~~~~-------~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~-g---------~  281 (391)
                      +  +.+....+...       .+..+.+++++|....+|+....+.+|..++.+|.    ...+..+. |         .
T Consensus       150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~----~~~~~~L~~g~~~l~~~~~q  225 (255)
T 3qqz_A          150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE----VIGEMSLTKGSRGLSHNIKQ  225 (255)
T ss_dssp             ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECSTTGGGCSSCCCS
T ss_pred             cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC----EEEEEEcCCccCCcccccCC
Confidence            7  22333443311       23467899999998889999888999999987764    22222222 1         5


Q ss_pred             CCceEeCCCCCEEEEEcC
Q 016318          282 PDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       282 p~~i~~d~~G~lwva~~~  299 (391)
                      |.||++|++|++||+.-.
T Consensus       226 pEGia~d~~G~lyIvsE~  243 (255)
T 3qqz_A          226 AEGVAMDASGNIYIVSEP  243 (255)
T ss_dssp             EEEEEECTTCCEEEEETT
T ss_pred             CCeeEECCCCCEEEEcCC
Confidence            789999999999998543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.15  E-value=2.7e-08  Score=93.73  Aligned_cols=202  Identities=14%  Similarity=0.104  Sum_probs=120.1

Q ss_pred             cCcceEEEccCCCeeEEEe-cCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           69 QGPESMAFDPLGRGPYTGV-ADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~-~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ..|..+++  +|+.+|++. .++.|..|+..   ....+.....     ..+.+. .   ........|+++++++++..
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~-----~~g~~~-~---~~~~~~~~~~~~~~spdg~~  168 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIE-----FKGSGP-D---KERQTMPHLHCVRITPDGKY  168 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEE-----CCCCCS-C---TTTCSSCCEEEEEECTTSSE
T ss_pred             CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEE-----ccCCCC-C---ccccCCCcceEEEECCCCCE
Confidence            46888888  677677776 46778877653   1111100000     000000 0   00111345789999994334


Q ss_pred             EEEEECCCC-eEEE--eCCCC----e-eEEc-e-eccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCC
Q 016318          145 LYIADAYFG-LMKV--GPEGG----L-ATSL-A-TEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       145 L~V~d~~~g-l~~~--d~~~g----~-~~~~-~-~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      ||+++...+ +..+  +..++    + +... . ..........|++++++++|+ +|+++..                 
T Consensus       169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----------------  231 (361)
T 3scy_A          169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-----------------  231 (361)
T ss_dssp             EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------
T ss_pred             EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-----------------
Confidence            999987644 5555  54444    2 2211 0 000011124678999999996 7887743                 


Q ss_pred             CceEEEEeCCCCeEEEec------cCCCCcceEEEccCCCEEEEEeCC-CCeEEEEEeccccCccceeeccc--CCCCCc
Q 016318          214 TGRVLKYDPTTKQTTVLL------RNLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIGEKAGNLEAFAIL--PGYPDN  284 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~------~~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~g~~~g~~~~~~~~--~g~p~~  284 (391)
                      ++.|..|+.++++.+.+.      .....|.+++++|||++||++... .+.|..|+++.. .++.+.....  ...|.+
T Consensus       232 ~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~g~~~~~~~~~~g~~~~~  310 (361)
T 3scy_A          232 GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-NGTLTKVGYQLTGIHPRN  310 (361)
T ss_dssp             TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-TCCEEEEEEEECSSCCCE
T ss_pred             CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-CCcEEEeeEecCCCCCce
Confidence            467888887777664432      223457799999999999999887 678888887521 2333333222  247899


Q ss_pred             eEeCCCCC-EEEEEcC
Q 016318          285 VRTNEKGE-FWVAIHC  299 (391)
Q Consensus       285 i~~d~~G~-lwva~~~  299 (391)
                      ++++++|+ +|++...
T Consensus       311 ~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          311 FIITPNGKYLLVACRD  326 (361)
T ss_dssp             EEECTTSCEEEEEETT
T ss_pred             EEECCCCCEEEEEECC
Confidence            99999998 6666544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.13  E-value=4e-09  Score=95.37  Aligned_cols=158  Identities=15%  Similarity=0.090  Sum_probs=111.5

Q ss_pred             cccCcceEEEccCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           67 QIQGPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      .-..+|+++++  |+.+|+.++ ++.+..+|.+..+.+....                  ..  .+.+.|++.|  +++|
T Consensus        64 ~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~------------------~g--~~~g~glt~D--g~~l  119 (266)
T 2iwa_A           64 DSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFT------------------HQ--MKDGWGLATD--GKIL  119 (266)
T ss_dssp             TTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEE------------------CC--SSSCCEEEEC--SSSE
T ss_pred             CCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEE------------------CC--CCCeEEEEEC--CCEE
Confidence            34567888887  344776665 5899999987544443321                  00  1234555554  6789


Q ss_pred             EEEECCCCeEEEeCCCCeeEEcee-ccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          146 YIADAYFGLMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       146 ~V~d~~~gl~~~d~~~g~~~~~~~-~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      |+++..+.|..+|+++.++..-.. ...+.+...+|.+... +|.+|++...                 ++.|.++|+++
T Consensus       120 ~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~-----------------~~~V~vID~~t  181 (266)
T 2iwa_A          120 YGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ-----------------TDCIARISAKD  181 (266)
T ss_dssp             EEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT
T ss_pred             EEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC-----------------CCeEEEEECCC
Confidence            999854559999999876543322 2234456679999888 7899998854                 47899999999


Q ss_pred             CeEEEecc--CC------------CCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          225 KQTTVLLR--NL------------QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       225 ~~~~~~~~--~~------------~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      +++....+  ++            ..||||+++++++.+||+.....+++.+++..
T Consensus       182 g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          182 GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            98754432  11            36799999999999999998889999998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.10  E-value=7.3e-09  Score=96.39  Aligned_cols=204  Identities=17%  Similarity=0.088  Sum_probs=113.3

Q ss_pred             CcceEEEccCCCeeEEEe-cCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           70 GPESMAFDPLGRGPYTGV-ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      +|.+++++++|+.+|+.. .++.|..++....+........     .         ........|.++++++++..||++
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~-----~---------~~~~~~~~~~~~~~spdg~~l~~~  109 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS-----S---------VPGEVGRSMYSFAISPDGKEVYAT  109 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC-----C---------STTEEEECSSCEEECTTSSEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc-----c---------ccccccccccceEECCCCCEEEEE
Confidence            699999999998677654 5789999987622221111000     0         000002337899999855568888


Q ss_pred             ECC------------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcc--cchhh-eeeecccC-
Q 016318          149 DAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNY--QRRNF-MQLVFSAE-  212 (391)
Q Consensus       149 d~~------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~--~~~~~-~~~~~~~~-  212 (391)
                      +..            ..|..+|.++++..........  ...+.+++++++|++|+++.. .+  ..... ....+... 
T Consensus       110 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~l~~~~~~-i~~~d~~~~~~~~~~~~~~  186 (349)
T 1jmx_B          110 VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRAADDGSLYVAGPD-IYKMDVKTGKYTVALPLRN  186 (349)
T ss_dssp             EEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEECTTSCEEEESSS-EEEECTTTCCEEEEECSTT
T ss_pred             cccccccccccccCCCeEEEEECCCccccceeeeccC--CCcccceeECCCCcEEEccCc-EEEEeCCCCceeccccccc
Confidence            743            4588999877543221111111  124678889999998875421 10  00000 00000000 


Q ss_pred             --------------------------------------------CCceEEEEeCCCCeEEEec--cCCCCcceEEEcc-C
Q 016318          213 --------------------------------------------DTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSK-D  245 (391)
Q Consensus       213 --------------------------------------------~~g~l~~~d~~~~~~~~~~--~~~~~~ngia~~~-d  245 (391)
                                                                  ....++.+|..+++++.+.  .....+.+++++| |
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d  266 (349)
T 1jmx_B          187 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD  266 (349)
T ss_dssp             CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSC
T ss_pred             cCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCC
Confidence                                                        0001222444444443332  1123567888889 9


Q ss_pred             CCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEE
Q 016318          246 KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVA  296 (391)
Q Consensus       246 ~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva  296 (391)
                      ++.+|++   .++|++++++.   ++..........|.+++++++|+ +|++
T Consensus       267 g~~l~~~---~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~  312 (349)
T 1jmx_B          267 PNQIYGV---LNRLAKYDLKQ---RKLIKAANLDHTYYCVAFDKKGDKLYLG  312 (349)
T ss_dssp             TTEEEEE---ESEEEEEETTT---TEEEEEEECSSCCCEEEECSSSSCEEEE
T ss_pred             CCEEEEE---cCeEEEEECcc---CeEEEEEcCCCCccceEECCCCCEEEEe
Confidence            9988888   56899998654   22211122345688999999986 6664

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.09  E-value=3.5e-08  Score=98.89  Aligned_cols=184  Identities=9%  Similarity=-0.038  Sum_probs=123.7

Q ss_pred             EEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCe
Q 016318           75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (391)
Q Consensus        75 ~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl  154 (391)
                      +++++|.++.++..++.|..||....+......                     ....|+++++++++..||+++....|
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~---------------------~g~~~~~v~~spdg~~l~v~~~d~~V  202 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID---------------------TGYAVHISRMSASGRYLLVIGRDARI  202 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEE---------------------CSTTEEEEEECTTSCEEEEEETTSEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEe---------------------cCcccceEEECCCCCEEEEECCCCeE
Confidence            478888866666778899999887322222110                     12238899999966679999887669


Q ss_pred             EEEeC--CCCeeEEceeccCCCcccCCcceeecC----CCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          155 MKVGP--EGGLATSLATEAEGVPLRFTNDLDIDD----EGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       155 ~~~d~--~~g~~~~~~~~~~~~~~~~~~~l~~d~----~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ..+|.  .+++...-..  .+   ..|.++++++    +|+ +|+++..                 .+.+..+|..+++.
T Consensus       203 ~v~D~~~~t~~~~~~i~--~g---~~p~~va~sp~~~~dg~~l~v~~~~-----------------~~~v~v~D~~t~~~  260 (543)
T 1nir_A          203 DMIDLWAKEPTKVAEIK--IG---IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEP  260 (543)
T ss_dssp             EEEETTSSSCEEEEEEE--CC---SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCE
T ss_pred             EEEECcCCCCcEEEEEe--cC---CCcceEEeCCCcCCCCCEEEEEEcc-----------------CCeEEEEecccccc
Confidence            99999  6665332111  12   3689999999    985 6776632                 36788899888775


Q ss_pred             EEeccC------------CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EE
Q 016318          228 TVLLRN------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FW  294 (391)
Q Consensus       228 ~~~~~~------------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lw  294 (391)
                      ......            -..+.+|++++++..++++....+.|+.++....+.-....+ .....|.++.++++|+ ++
T Consensus       261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~  339 (543)
T 1nir_A          261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFM  339 (543)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEE
T ss_pred             ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEE
Confidence            443321            124568999999998999988889999999765322111111 2234789999999999 56


Q ss_pred             EEEcCCCc
Q 016318          295 VAIHCRRS  302 (391)
Q Consensus       295 va~~~~~~  302 (391)
                      ++......
T Consensus       340 va~~~~~~  347 (543)
T 1nir_A          340 TAANNSNK  347 (543)
T ss_dssp             EEEGGGTE
T ss_pred             EEecCCCe
Confidence            66554433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.06  E-value=2.8e-07  Score=84.82  Aligned_cols=188  Identities=10%  Similarity=-0.021  Sum_probs=125.6

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCcee--EEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWT--DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ...++++.++|+.++++..+|.|..|+.....  .....                    .........+++++++..|++
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--------------------~~~~~~i~~~~~~~~~~~l~~  158 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL--------------------TSSAPACYALAISPDSKVCFS  158 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE--------------------ECSSSCEEEEEECTTSSEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec--------------------ccCCCceEEEEECCCCCEEEE
Confidence            45678999999989999999999999876211  11111                    011244678899884344566


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      +.....|..+|..+++........    ...+..++++++|+..++.+.                 +|.+..||..+++.
T Consensus       159 ~~~dg~v~~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~  217 (337)
T 1gxr_A          159 CCSDGNIAVWDLHNQTLVRQFQGH----TDGASCIDISNDGTKLWTGGL-----------------DNTVRSWDLREGRQ  217 (337)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEE
T ss_pred             EeCCCcEEEEeCCCCceeeeeecc----cCceEEEEECCCCCEEEEEec-----------------CCcEEEEECCCCce
Confidence            665566999999887544322211    234678899999977666533                 57899999988876


Q ss_pred             EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      ............++++|+++.++++ +..+.|..+++....   ...+....+....++++++|+++++......
T Consensus       218 ~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  288 (337)
T 1gxr_A          218 LQQHDFTSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EeeecCCCceEEEEECCCCCEEEEE-cCCCcEEEEECCCCC---eEEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence            5555444567789999999977766 456789998876532   2222223344567889999997666554433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.04  E-value=1.9e-08  Score=90.13  Aligned_cols=153  Identities=18%  Similarity=0.166  Sum_probs=108.2

Q ss_pred             CcceEEEccCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ..|+++.+  |+.+|+.++ ++.++++|.+..+.+....                  .   .+.+.|++.|  ++.||++
T Consensus        88 FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~------------------~---~~eG~glt~d--g~~L~~S  142 (262)
T 3nol_A           88 FGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFN------------------Y---DGEGWGLTHN--DQYLIMS  142 (262)
T ss_dssp             CEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEE------------------C---SSCCCCEEEC--SSCEEEC
T ss_pred             ceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEE------------------C---CCCceEEecC--CCEEEEE
Confidence            34788876  445888775 6889999988544443321                  1   1345677765  6789999


Q ss_pred             ECCCCeEEEeCCCCeeEEcee-ccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          149 DAYFGLMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~-~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      |....|..+|+++.++..-.. ...+.+...+|.+... +|.||+....                 ++.|.++|++++++
T Consensus       143 dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~-----------------~~~I~vIDp~tG~V  204 (262)
T 3nol_A          143 DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ-----------------TNKIVRIDPETGKV  204 (262)
T ss_dssp             CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEECTTTCBE
T ss_pred             CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc-----------------CCeEEEEECCCCcE
Confidence            865569999999876543322 2345566778888776 8899998854                 46899999999987


Q ss_pred             EEeccC-------------CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          228 TVLLRN-------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       228 ~~~~~~-------------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      ....+-             ...+||||++|+++.+||+.-.=.+++.+.+.
T Consensus       205 ~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          205 TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            654321             13679999999999999986544577776653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.03  E-value=2.8e-08  Score=94.17  Aligned_cols=150  Identities=15%  Similarity=0.167  Sum_probs=95.5

Q ss_pred             cCccceEEEecCCCcEEEEECCC-CeEEEeCC-CCeeEEceeccCCC-cccCCcceeecCCCC-EEEEeCCCcccchhhe
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYF-GLMKVGPE-GGLATSLATEAEGV-PLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFM  205 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~-gl~~~d~~-~g~~~~~~~~~~~~-~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~  205 (391)
                      ...|+++++++++..||+++... .|..++.+ +++.+.+... ... ....|.+++++++|+ +|+++..         
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~-~~~~~g~~p~~~~~spdg~~l~v~~~~---------  213 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV-DAPDPGDHPRWVAMHPTGNYLYALMEA---------  213 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE-ECSSTTCCEEEEEECTTSSEEEEEETT---------
T ss_pred             CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE-ecCCCCCCCCEeEECCCCCEEEEEECC---------
Confidence            45689999999444589988754 48888887 7766543221 100 124689999999994 7777642         


Q ss_pred             eeecccCCCce--EEEEeCCCCeEEE----e--c-cCC---C-------CcceEE-EccCCCEEEEEeCCCC-----eEE
Q 016318          206 QLVFSAEDTGR--VLKYDPTTKQTTV----L--L-RNL---Q-------FPNGLS-LSKDKSFFVFCEGSVG-----RLH  260 (391)
Q Consensus       206 ~~~~~~~~~g~--l~~~d~~~~~~~~----~--~-~~~---~-------~~ngia-~~~d~~~l~v~et~~~-----~I~  260 (391)
                              ++.  ++.+|.++++...    +  . .+.   .       .+.+++ ++|||++||+++...+     .|.
T Consensus       214 --------~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~  285 (365)
T 1jof_A          214 --------GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIA  285 (365)
T ss_dssp             --------TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEE
T ss_pred             --------CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEE
Confidence                    234  4455666666431    1  1 111   1       478999 9999999999876554     888


Q ss_pred             EEEeccccCcccee---ecc-cCCCCCceEeCC---CCC-EEEEEcC
Q 016318          261 KYWLIGEKAGNLEA---FAI-LPGYPDNVRTNE---KGE-FWVAIHC  299 (391)
Q Consensus       261 ~~~~~g~~~g~~~~---~~~-~~g~p~~i~~d~---~G~-lwva~~~  299 (391)
                      .++++.  .++...   ... ....|.++++++   +|+ ++++...
T Consensus       286 v~~~~~--~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          286 GFKLRD--CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             EEEECT--TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             EEEECC--CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence            888752  233332   111 223588899998   687 6666543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.01  E-value=2.5e-08  Score=89.38  Aligned_cols=152  Identities=22%  Similarity=0.282  Sum_probs=106.9

Q ss_pred             CcceEEEccCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ..|+++++  |+.+|+.++ ++.++.+|.+..+.+....                  .   .+.+.|++.|  +++||++
T Consensus        97 FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~------------------~---~~eGwGLt~D--g~~L~vS  151 (268)
T 3nok_A           97 FAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTR------------------Y---SGEGWGLCYW--NGKLVRS  151 (268)
T ss_dssp             CEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEE------------------C---SSCCCCEEEE--TTEEEEE
T ss_pred             ceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEe------------------C---CCceeEEecC--CCEEEEE
Confidence            44888886  334777664 6889999988555444331                  1   1345788876  5799999


Q ss_pred             ECCCCeEEEeCCCCeeEEce-eccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          149 DAYFGLMKVGPEGGLATSLA-TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~-~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      |....|..+|+++.++..-. ....+.+..++|.+... +|.||+....                 ++.|.++|++++++
T Consensus       152 dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~-----------------s~~I~vIDp~TG~V  213 (268)
T 3nok_A          152 DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH-----------------SSDVLEIDPATGTV  213 (268)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-----------------CSEEEEECTTTCBE
T ss_pred             CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC-----------------CCeEEEEeCCCCcE
Confidence            96556999999987654322 22345566788888877 8899998854                 46899999999987


Q ss_pred             EEecc--------------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318          228 TVLLR--------------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  264 (391)
Q Consensus       228 ~~~~~--------------~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~  264 (391)
                      ....+              ...-+||||++|+++.+||+.-.=.+++.+.+
T Consensus       214 ~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          214 VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            65431              11367999999999889998654456666653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.01  E-value=8.5e-08  Score=89.07  Aligned_cols=141  Identities=13%  Similarity=0.070  Sum_probs=96.2

Q ss_pred             eEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccC
Q 016318          135 GLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      |+++.+ ++++|++....+ |..+|.++++....... .  ....+.+++++++|+ +|++...                
T Consensus         4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~--~~~~~~~~~~s~dg~~~~v~~~~----------------   63 (349)
T 1jmx_B            4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-P--DKFGPGTAMMAPDNRTAYVLNNH----------------   63 (349)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-S--SCCSSCEEEECTTSSEEEEEETT----------------
T ss_pred             cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec-C--CCCCCceeEECCCCCEEEEEeCC----------------
Confidence            445555 788998877655 99999998865433221 1  112478999999996 7888743                


Q ss_pred             CCceEEEEeCCCCeEEEeccC-------CCCcceEEEccCCCEEEEEeCC-----------CCeEEEEEeccccCcccee
Q 016318          213 DTGRVLKYDPTTKQTTVLLRN-------LQFPNGLSLSKDKSFFVFCEGS-----------VGRLHKYWLIGEKAGNLEA  274 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~-------~~~~ngia~~~d~~~l~v~et~-----------~~~I~~~~~~g~~~g~~~~  274 (391)
                       ++.|..||.++++.......       ...+++++++|||+.+|++...           .+.|+.++++..+..+...
T Consensus        64 -~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  142 (349)
T 1jmx_B           64 -YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  142 (349)
T ss_dssp             -TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             -CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence             47899999998876543322       2237899999999999998643           4789999976532221111


Q ss_pred             ecccCCCCCceEeCCCCCEEEE
Q 016318          275 FAILPGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       275 ~~~~~g~p~~i~~d~~G~lwva  296 (391)
                      ....+..+.+++++++|++|++
T Consensus       143 ~~~~~~~~~~~~~s~dg~l~~~  164 (349)
T 1jmx_B          143 TFPMPRQVYLMRAADDGSLYVA  164 (349)
T ss_dssp             EEECCSSCCCEEECTTSCEEEE
T ss_pred             eccCCCcccceeECCCCcEEEc
Confidence            1123445778889999998875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.00  E-value=8.8e-08  Score=88.41  Aligned_cols=193  Identities=14%  Similarity=0.055  Sum_probs=117.6

Q ss_pred             CcceEEEccCCCeeEEEe------------cCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEE
Q 016318           70 GPESMAFDPLGRGPYTGV------------ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~------------~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~  137 (391)
                      .|.+++++++|+.+|++.            .++.|..++....+......                     ....|.+++
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~---------------------~~~~~~~~~  141 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE---------------------APRQITMLA  141 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---------------------CCSSCCCEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe---------------------CCCCcceeE
Confidence            789999999998888886            46899999876322221110                     134578899


Q ss_pred             EecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeeccc-----
Q 016318          138 FDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSA-----  211 (391)
Q Consensus       138 ~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~-----  211 (391)
                      +++++..||++  ...|+.+|..+++.........     .+..++++++|. +|++......-...+.......     
T Consensus       142 ~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T 1pby_B          142 WARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS-----WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             ECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTT-----TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             ECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccc-----cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence            99844458888  3459999999886543322111     122335566664 5554422110000000000000     


Q ss_pred             -CCCceEEEEeCCCCeEEEec--cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318          212 -EDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  288 (391)
Q Consensus       212 -~~~g~l~~~d~~~~~~~~~~--~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d  288 (391)
                       .....|..+|.++++.....  .....+++++++||++++|++   .+.|++++++.   ++.......+..|.+++++
T Consensus       215 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s  288 (337)
T 1pby_B          215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEK---NASIKRVPLPHSYYSVNVS  288 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTT---TEEEEEEECSSCCCEEEEC
T ss_pred             cccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCC---CcCcceecCCCceeeEEEC
Confidence             01126889999988775322  223467889999999999988   47899998654   2221122234568899999


Q ss_pred             CCCC-EEEE
Q 016318          289 EKGE-FWVA  296 (391)
Q Consensus       289 ~~G~-lwva  296 (391)
                      ++|+ +|++
T Consensus       289 ~dg~~l~~~  297 (337)
T 1pby_B          289 TDGSTVWLG  297 (337)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCCEEEEE
Confidence            9998 6665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.00  E-value=5.2e-08  Score=86.46  Aligned_cols=153  Identities=17%  Similarity=0.135  Sum_probs=108.5

Q ss_pred             CcceEEEccCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ..|+++++  |+.+|..++ ++.++++|.+..+.+....                     ..+.+.|++.|  +++||++
T Consensus        66 fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~---------------------~~~~Gwglt~d--g~~L~vS  120 (243)
T 3mbr_X           66 FGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFR---------------------YPGEGWALTSD--DSHLYMS  120 (243)
T ss_dssp             CEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE---------------------CSSCCCEEEEC--SSCEEEE
T ss_pred             ceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEe---------------------CCCCceEEeeC--CCEEEEE
Confidence            45888886  344777654 6889999988555544331                     02346777765  6799999


Q ss_pred             ECCCCeEEEeCCCCeeEEc-eeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          149 DAYFGLMKVGPEGGLATSL-ATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~-~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      |....|..+|+++.++..- .....+.+..++|.+... +|.+|+....                 +..|.++|++++++
T Consensus       121 dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~-----------------s~~I~vIDp~tG~V  182 (243)
T 3mbr_X          121 DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL-----------------TSRIARIDPASGKV  182 (243)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-----------------TTEEEEECTTTCBE
T ss_pred             CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC-----------------CCeEEEEECCCCCE
Confidence            9756699999998765432 222345566778888766 8899988854                 46899999999987


Q ss_pred             EEecc--------------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          228 TVLLR--------------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       228 ~~~~~--------------~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      ....+              ...-+||||++|+++.+||+.-.=.+++.+.+.
T Consensus       183 ~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          183 VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence            65431              123679999999999999986544577777654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.99  E-value=1.1e-06  Score=81.63  Aligned_cols=196  Identities=14%  Similarity=0.101  Sum_probs=125.0

Q ss_pred             cccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      .+.-.+-.++++.+++..+.+++.|+.|..|+......+.....                    .......+++++ +++
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~--------------------~~~~~~~~~~sp-dg~  135 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--------------------GPVDAWTLAFSP-DSQ  135 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC--------------------CTTCCCCEEECT-TSS
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC--------------------CCccEEEEEECC-CCC
Confidence            34334556788999999889999999999998762222211110                    123345788998 566


Q ss_pred             EEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 LYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      .+++....| +..++.++++........    ......+++.++|++.++.+.                 +|.|..||..
T Consensus       136 ~l~~g~~dg~v~i~~~~~~~~~~~~~~~----~~~v~~~~~spdg~~lasg~~-----------------dg~i~iwd~~  194 (321)
T 3ow8_A          136 YLATGTHVGKVNIFGVESGKKEYSLDTR----GKFILSIAYSPDGKYLASGAI-----------------DGIINIFDIA  194 (321)
T ss_dssp             EEEEECTTSEEEEEETTTCSEEEEEECS----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETT
T ss_pred             EEEEEcCCCcEEEEEcCCCceeEEecCC----CceEEEEEECCCCCEEEEEcC-----------------CCeEEEEECC
Confidence            555544444 888888876543322211    134678899999987776543                 5789999998


Q ss_pred             CCeEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          224 TKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       224 ~~~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      +++....... ....+.++++||++.|..+ ...+.|..+++....  ....+....+....++++++|.+.++......
T Consensus       195 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~-s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~  271 (321)
T 3ow8_A          195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTA-SDDGYIKIYDVQHAN--LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS  271 (321)
T ss_dssp             TTEEEEEECCCSSCCCEEEECTTSCEEEEE-CTTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCcEEEEEcccCCceeEEEEcCCCCEEEEE-cCCCeEEEEECCCcc--eeEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence            8876544433 3356789999999955444 667788888865321  11222222233457889999997776665544


Q ss_pred             hhh
Q 016318          303 LYS  305 (391)
Q Consensus       303 ~~~  305 (391)
                      +.+
T Consensus       272 v~i  274 (321)
T 3ow8_A          272 VKV  274 (321)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.94  E-value=1.1e-07  Score=92.04  Aligned_cols=96  Identities=13%  Similarity=-0.034  Sum_probs=65.5

Q ss_pred             cCCCeeEEEecC-----CEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC-
Q 016318           78 PLGRGPYTGVAD-----GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY-  151 (391)
Q Consensus        78 ~~G~~ly~~~~~-----g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~-  151 (391)
                      ++++.+|+....     +.|..+|....+.....                     +.+..| |++++++++.|||++.. 
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I---------------------~vG~~P-gia~SpDgk~lyVan~~~  139 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMT---------------------DGGFLP-HPVAAEDGSFFAQASTVF  139 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE---------------------EECSSC-EEEECTTSSCEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEE---------------------ECCCCC-ceEECCCCCEEEEEeccc
Confidence            467778887764     68999998844444322                     124569 99999977779999852 


Q ss_pred             ---------CCeEEEeCCCCeeEEceeccCCC---cccCCcceeecCCC-CEEEEeC
Q 016318          152 ---------FGLMKVGPEGGLATSLATEAEGV---PLRFTNDLDIDDEG-NVYFTDS  195 (391)
Q Consensus       152 ---------~gl~~~d~~~g~~~~~~~~~~~~---~~~~~~~l~~d~~G-~ly~td~  195 (391)
                               +.|..||+.++++..-.......   ....|.++++++|| .+|+++.
T Consensus       140 ~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~  196 (426)
T 3c75_H          140 ERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF  196 (426)
T ss_dssp             EETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC
T ss_pred             cccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec
Confidence                     34999999987654321111011   12468999999999 6999873

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.94  E-value=3.8e-07  Score=91.74  Aligned_cols=190  Identities=13%  Similarity=0.102  Sum_probs=121.5

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEe----cCC
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD----KKT  142 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d----~~~  142 (391)
                      ..|+++++++||+.+|++..++.|..+|..  ..+.....                     ..+..|.+++++    +++
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i---------------------~~G~~P~~ia~s~~~~pDG  255 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI---------------------KIGSEARSIETSKMEGWED  255 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE---------------------ECCSEEEEEEECCSTTCTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE---------------------ecCCCCceeEEccccCCCC
Confidence            368999999999999999999999999983  32222211                     124569999999    556


Q ss_pred             CcEEEEECCCC-eEEEeCCCCeeEEceec----cCCC---cccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318          143 GDLYIADAYFG-LMKVGPEGGLATSLATE----AEGV---PLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       143 g~L~V~d~~~g-l~~~d~~~g~~~~~~~~----~~~~---~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ..+||++...+ +..+|..+.+.......    .++.   +...+..+...+++..|+...                ..+
T Consensus       256 k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~----------------~~~  319 (567)
T 1qks_A          256 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV----------------KET  319 (567)
T ss_dssp             TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE----------------TTT
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe----------------cCC
Confidence            67999987744 88999887654332111    1110   011334566666654444331                236


Q ss_pred             ceEEEEeCCCCeEEEe--ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc-CCC--C-CceE-e
Q 016318          215 GRVLKYDPTTKQTTVL--LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL-PGY--P-DNVR-T  287 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~--~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~-~g~--p-~~i~-~  287 (391)
                      |.|..+|..+.+....  .....++.++.+++|++++|++....++|..++.+..   +....... ...  | .++. +
T Consensus       320 g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~~~  396 (567)
T 1qks_A          320 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGANFV  396 (567)
T ss_dssp             TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEEEE
T ss_pred             CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCccceeeE
Confidence            8888888776532221  2334578899999999999999888899999987642   22111122 112  2 3554 4


Q ss_pred             CCC-CCEEEEEc
Q 016318          288 NEK-GEFWVAIH  298 (391)
Q Consensus       288 d~~-G~lwva~~  298 (391)
                      +++ |.+|++..
T Consensus       397 ~p~~g~v~~t~~  408 (567)
T 1qks_A          397 HPTFGPVWATSH  408 (567)
T ss_dssp             ETTTEEEEEEEB
T ss_pred             CCCCCcEEEeCC
Confidence            665 66998764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.94  E-value=1.7e-08  Score=98.79  Aligned_cols=164  Identities=13%  Similarity=0.226  Sum_probs=104.9

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCC----cccCCcceeecC----CCCEEEEeCCCccc
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGV----PLRFTNDLDIDD----EGNVYFTDSSTNYQ  200 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~----~~~~~~~l~~d~----~G~ly~td~~~~~~  200 (391)
                      ...|.+|++++ +|+|||++...+ |++++..+++.+.+.......    ....+.+|++++    +|.||++.+.....
T Consensus        26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            56799999999 899999998765 999998767666543221110    123456999998    78999998420000


Q ss_pred             chhheeeecccCCCceEEEEeCCC--Ce---EEEecc-----CCCCcceEEEccCCCEEEEEeCC---------------
Q 016318          201 RRNFMQLVFSAEDTGRVLKYDPTT--KQ---TTVLLR-----NLQFPNGLSLSKDKSFFVFCEGS---------------  255 (391)
Q Consensus       201 ~~~~~~~~~~~~~~g~l~~~d~~~--~~---~~~~~~-----~~~~~ngia~~~d~~~l~v~et~---------------  255 (391)
                      ...     -......+|+|++.+.  ++   .+++..     ...++++|++++||+ |||+...               
T Consensus       105 ~~~-----~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~~~~~~~~~  178 (454)
T 1cru_A          105 STD-----KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYLFLPNQA  178 (454)
T ss_dssp             C-------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGTTSCCCT
T ss_pred             CCc-----cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCcccccccccc
Confidence            000     0000024788776432  22   233332     245789999999998 9998432               


Q ss_pred             -----------------CCeEEEEEecccc-Cc-------cceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318          256 -----------------VGRLHKYWLIGEK-AG-------NLEAFAILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       256 -----------------~~~I~~~~~~g~~-~g-------~~~~~~~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                                       .++|+|++.+|.- .+       ..++++.--..|.++++|++|++|++.+..
T Consensus       179 ~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~  248 (454)
T 1cru_A          179 QHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGP  248 (454)
T ss_dssp             TCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECS
T ss_pred             ccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEecCC
Confidence                             3689999987631 11       245555311247889999999999998754

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.93  E-value=2.2e-07  Score=87.97  Aligned_cols=153  Identities=13%  Similarity=0.059  Sum_probs=104.1

Q ss_pred             cCccceEEEecCCCcEEEEECC-------------CC---eEEEeCCCC--eeE-Eceec-cCCCcccCCcceeec-C--
Q 016318          130 CGRPLGLRFDKKTGDLYIADAY-------------FG---LMKVGPEGG--LAT-SLATE-AEGVPLRFTNDLDID-D--  186 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~-------------~g---l~~~d~~~g--~~~-~~~~~-~~~~~~~~~~~l~~d-~--  186 (391)
                      .-.+.++.+|+ .++|||.|.+             .+   |+.+|..++  ++. ++.-+ ..-.+..+.+++++| .  
T Consensus        86 lvsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~  164 (381)
T 3q6k_A           86 LTSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP  164 (381)
T ss_dssp             SSCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred             eEEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence            34578999998 8999999976             22   889999988  543 33211 111234688999999 2  


Q ss_pred             -----CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC-------------------CCCcceEEE
Q 016318          187 -----EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN-------------------LQFPNGLSL  242 (391)
Q Consensus       187 -----~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-------------------~~~~ngia~  242 (391)
                           ++.+|++|++                 .++|+.||..+++...+.+.                   .....||++
T Consensus       165 ~~~c~~~~aYItD~~-----------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaL  227 (381)
T 3q6k_A          165 KGDCSETFVYITNFL-----------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITL  227 (381)
T ss_dssp             TTTSCSEEEEEEETT-----------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEE
T ss_pred             CCCCCccEEEEEcCC-----------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEe
Confidence                 4679999965                 46899999888876555421                   013568999


Q ss_pred             ccC----CCEEEEEeCCCCeEEEEEec---ccc-CccceeecccCCCCCc--eEeC-CCCCEEEEEcCC
Q 016318          243 SKD----KSFFVFCEGSVGRLHKYWLI---GEK-AGNLEAFAILPGYPDN--VRTN-EKGEFWVAIHCR  300 (391)
Q Consensus       243 ~~d----~~~l~v~et~~~~I~~~~~~---g~~-~g~~~~~~~~~g~p~~--i~~d-~~G~lwva~~~~  300 (391)
                      +|+    +++||+.-..+.+++++..+   .+. ....+.+.+.+...++  +++| .+|++|++....
T Consensus       228 sp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~  296 (381)
T 3q6k_A          228 GDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANT  296 (381)
T ss_dssp             CCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSS
T ss_pred             cCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccC
Confidence            998    89999998888899999732   211 2223333333212343  5676 899999998664

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.93  E-value=2.4e-06  Score=78.56  Aligned_cols=192  Identities=13%  Similarity=0.040  Sum_probs=119.8

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCc---eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLK---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-  144 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-  144 (391)
                      ....+++++++|+.++++. +|.|..|+...   ...+...                  ...........+++++ +++ 
T Consensus        52 ~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~------------------~~~~~~~~v~~~~~~~-~~~~  111 (337)
T 1gxr_A           52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL------------------DCLNRDNYIRSCKLLP-DGCT  111 (337)
T ss_dssp             SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE------------------ECSCTTSBEEEEEECT-TSSE
T ss_pred             CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc------------------cccCCCCcEEEEEEcC-CCCE
Confidence            3567899999999777777 99999998651   1111100                  0001234567899998 555 


Q ss_pred             EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      |+++.....|..+|..+++.........  .......+++.++|+..++.+.                 +|.+..||..+
T Consensus       112 l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-----------------dg~v~~~d~~~  172 (337)
T 1gxr_A          112 LIVGGEASTLSIWDLAAPTPRIKAELTS--SAPACYALAISPDSKVCFSCCS-----------------DGNIAVWDLHN  172 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--EEEEEEEC--SSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTT
T ss_pred             EEEEcCCCcEEEEECCCCCcceeeeccc--CCCceEEEEECCCCCEEEEEeC-----------------CCcEEEEeCCC
Confidence            5555544558888988775322211111  1124678899999876666532                 47899999988


Q ss_pred             CeEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCch
Q 016318          225 KQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       225 ~~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      ++...... .......++++|+++.++.+ +..+.|..+++...   +.......++....++++++|++.++......+
T Consensus       173 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i  248 (337)
T 1gxr_A          173 QTLVRQFQGHTDGASCIDISNDGTKLWTG-GLDNTVRSWDLREG---RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNV  248 (337)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTT---EEEEEEECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CceeeeeecccCceEEEEECCCCCEEEEE-ecCCcEEEEECCCC---ceEeeecCCCceEEEEECCCCCEEEEEcCCCcE
Confidence            77554433 33467789999999977666 55678998886542   111111234455678899999866655444333

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.93  E-value=6.3e-07  Score=80.43  Aligned_cols=198  Identities=13%  Similarity=0.164  Sum_probs=119.9

Q ss_pred             cCccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318          130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      ...+.||+++++++.||+.... ..|+++|+++...+.+.  ..+  ..-+.+|+.+.+|.+|+++.+            
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~--l~g--~~D~EGIa~~~~g~~~vs~E~------------   89 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIP--LDF--VKDLETIEYIGDNQFVISDER------------   89 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEE--CSS--CSSEEEEEECSTTEEEEEETT------------
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEe--cCC--CCChHHeEEeCCCEEEEEECC------------
Confidence            3568899999867789985544 44999999944333331  122  245789999999999999754            


Q ss_pred             cccCCCceEEEEeCCC-CeEE---EeccCC-CCc-----ceEEEccCCCEEEEEeCCCC-eEEEEEeccccC-ccceeec
Q 016318          209 FSAEDTGRVLKYDPTT-KQTT---VLLRNL-QFP-----NGLSLSKDKSFFVFCEGSVG-RLHKYWLIGEKA-GNLEAFA  276 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~-~~~~---~~~~~~-~~~-----ngia~~~d~~~l~v~et~~~-~I~~~~~~g~~~-g~~~~~~  276 (391)
                           +++++.|+... ++..   ...-.+ ..+     -|+|++++++.+|++.-... +|+.++  |-.. ....+..
T Consensus        90 -----~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~  162 (255)
T 3qqz_A           90 -----DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISK  162 (255)
T ss_dssp             -----TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEE
T ss_pred             -----CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeec
Confidence                 35677665332 2211   111111 123     69999999988888865444 777776  3111 1122221


Q ss_pred             c------c-CCCCCceEeCCC-CCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCC
Q 016318          277 I------L-PGYPDNVRTNEK-GEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG  348 (391)
Q Consensus       277 ~------~-~g~p~~i~~d~~-G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g  348 (391)
                      +      . -.-+.++++|+. |++|+-....                                      ..++++|.+|
T Consensus       163 ~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s--------------------------------------~~L~~~d~~g  204 (255)
T 3qqz_A          163 DKALQRQFTLDDVSGAEFNQQKNTLLVLSHES--------------------------------------RALQEVTLVG  204 (255)
T ss_dssp             CHHHHHTCCSSCCCEEEEETTTTEEEEEETTT--------------------------------------TEEEEECTTC
T ss_pred             chhhccccccCCceeEEEcCCCCeEEEEECCC--------------------------------------CeEEEEcCCC
Confidence            1      0 113567888874 4577765543                                      3477888889


Q ss_pred             CEEEEEeCCCCC-----eeeceeEEEEEC-CEEEEecCCCCeEEEEe
Q 016318          349 KILQVLEDSKGK-----VVKAISEVEEKD-GKLWMGSVLMPFVAVYD  389 (391)
Q Consensus       349 ~~~~~~~~~~g~-----~~~~is~~~~~~-g~Lylgs~~~~~i~~~~  389 (391)
                      +++..+.=..|.     .+.....++.+. |+||+.|=. +.+-|++
T Consensus       205 ~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~f~  250 (255)
T 3qqz_A          205 EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFYRFT  250 (255)
T ss_dssp             CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEEEEE
T ss_pred             CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEEEEE
Confidence            866555433332     233445665544 889998655 4666654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.92  E-value=2.4e-07  Score=87.49  Aligned_cols=195  Identities=11%  Similarity=0.028  Sum_probs=110.0

Q ss_pred             cceEEEccCCCeeEEEec------CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           71 PESMAFDPLGRGPYTGVA------DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~------~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      -.++++.|||+.+.+++.      |+.|..++.......       ...|.         ...........++|++ ++.
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-------~~~~~---------~~~~~~~~V~~~~~s~-d~~  107 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-------ESLCT---------AGVQTEAGVTDVAWVS-EKG  107 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C-------GGGCS---------EEEECSSCEEEEEEET-TTE
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc-------eeEec---------ccCCCCCCEEEEEEcC-CCC
Confidence            468999999998888876      667777754310000       00010         0001123367899998 788


Q ss_pred             EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      ++++...+.|..+|..+++............-..++.+++.++|+..++.+.                 ++.|..||.++
T Consensus       108 ~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-----------------dg~v~iwd~~~  170 (357)
T 4g56_B          108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-----------------DFSVKVWDLSQ  170 (357)
T ss_dssp             EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEETTT
T ss_pred             EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-----------------CCeEEEEECCC
Confidence            8888765557777877664322111000011235678999999987777543                 57899999988


Q ss_pred             CeEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCC-CEEEEEcC
Q 016318          225 KQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG-EFWVAIHC  299 (391)
Q Consensus       225 ~~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G-~lwva~~~  299 (391)
                      ++....... -...+.++++++++.++++....+.|..+++...+......+......+..+++.+++ +++++...
T Consensus       171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~  247 (357)
T 4g56_B          171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE  247 (357)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred             CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence            876554433 3456789999988656666566677887776532211111111122345567787765 45544333

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.92  E-value=2e-06  Score=80.00  Aligned_cols=198  Identities=9%  Similarity=0.124  Sum_probs=119.3

Q ss_pred             ccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE-E
Q 016318           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-Y  146 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L-~  146 (391)
                      -....+++++++|+.++++..+|.|..|+...........                    ...+...++++++ ++++ +
T Consensus        32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~~~-~~~~l~   90 (369)
T 3zwl_B           32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD--------------------GHTGTIWSIDVDC-FTKYCV   90 (369)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC--------------------CCSSCEEEEEECT-TSSEEE
T ss_pred             eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh--------------------hcCCcEEEEEEcC-CCCEEE
Confidence            3456789999999999999999999999876222222111                    1134567889998 5554 4


Q ss_pred             EEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       147 V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      .+.....|..+|..+++...... .    ...+..+++.++|+..++....            .....|.+..||..++.
T Consensus        91 s~~~dg~i~iwd~~~~~~~~~~~-~----~~~v~~~~~~~~~~~l~~~~~~------------~~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B           91 TGSADYSIKLWDVSNGQCVATWK-S----PVPVKRVEFSPCGNYFLAILDN------------VMKNPGSINIYEIERDS  153 (369)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEE-C----SSCEEEEEECTTSSEEEEEECC------------BTTBCCEEEEEEEEECT
T ss_pred             EEeCCCeEEEEECCCCcEEEEee-c----CCCeEEEEEccCCCEEEEecCC------------ccCCCCEEEEEEecCCc
Confidence            44444448889988776544332 1    1246788999999876665321            00112566666654331


Q ss_pred             ------------EEEec--cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC
Q 016318          227 ------------TTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  292 (391)
Q Consensus       227 ------------~~~~~--~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~  292 (391)
                                  ...+.  ........++++++++.++++ ...+.|..+++.... .....+....+....++++++|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~  231 (369)
T 3zwl_B          154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG-HKDGKISKYDVSNNY-EYVDSIDLHEKSISDMQFSPDLT  231 (369)
T ss_dssp             TTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE-ETTSEEEEEETTTTT-EEEEEEECCSSCEEEEEECTTSS
T ss_pred             cceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE-cCCCEEEEEECCCCc-EeEEEEecCCCceeEEEECCCCC
Confidence                        11111  111256789999999977666 456789999865411 11122222233456788999998


Q ss_pred             EEEEEcCCCchhh
Q 016318          293 FWVAIHCRRSLYS  305 (391)
Q Consensus       293 lwva~~~~~~~~~  305 (391)
                      +.++......+..
T Consensus       232 ~l~~~~~d~~i~v  244 (369)
T 3zwl_B          232 YFITSSRDTNSFL  244 (369)
T ss_dssp             EEEEEETTSEEEE
T ss_pred             EEEEecCCceEEE
Confidence            6666554444433

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.91  E-value=5e-07  Score=87.21  Aligned_cols=179  Identities=12%  Similarity=0.055  Sum_probs=116.5

Q ss_pred             CcceEEEccCCCeeEEEecCC---EEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           70 GPESMAFDPLGRGPYTGVADG---RILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g---~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ...++++.|+|+.++++..++   .|+.++..  +...+..                       ..+....+++++ +|+
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~-----------------------~~~~~~~~~~sp-dg~  235 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-----------------------FPRHNGAPAFSP-DGS  235 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-----------------------CSSCEEEEEECT-TSS
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec-----------------------CCCcccCEEEcC-CCC
Confidence            456788999999777777664   88888876  2222210                       123456789998 555


Q ss_pred             -EEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          145 -LYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       145 -L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                       |+++....   .|+.+|..+++.+.+....     .....+++.+||+ |+++...               .+...|+.
T Consensus       236 ~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~l~~~s~~---------------~g~~~i~~  295 (415)
T 2hqs_A          236 KLAFALSKTGSLNLYVMDLASGQIRQVTDGR-----SNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYK  295 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEEECCCCS-----SCEEEEEECTTSSEEEEEECT---------------TSSCEEEE
T ss_pred             EEEEEEecCCCceEEEEECCCCCEEeCcCCC-----CcccceEECCCCCEEEEEECC---------------CCCcEEEE
Confidence             65454332   3999999988776553221     2456788999997 5555421               12337999


Q ss_pred             EeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEE
Q 016318          220 YDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva  296 (391)
                      +|..+++.+.+.........++++|||++|+++...  ...|+.+++++.   +...+... .....++++++|+..+.
T Consensus       296 ~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~---~~~~l~~~-~~~~~~~~spdg~~l~~  370 (415)
T 2hqs_A          296 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVLSST-FLDETPSLAPNGTMVIY  370 (415)
T ss_dssp             EETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---CEEECCCS-SSCEEEEECTTSSEEEE
T ss_pred             EECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC---CEEEecCC-CCcCCeEEcCCCCEEEE
Confidence            999988876665444456689999999988877543  357888887652   22222221 24567889999984443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.91  E-value=1.4e-07  Score=89.49  Aligned_cols=72  Identities=13%  Similarity=0.210  Sum_probs=52.3

Q ss_pred             ceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc---cCCCCCceEeCCCC
Q 016318          215 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LPGYPDNVRTNEKG  291 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~---~~g~p~~i~~d~~G  291 (391)
                      +.|..+|.++++...-..... |.+|+++|||++||++..  +.|..++.+.   +..+....   ....|.+++++++|
T Consensus       286 ~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t---~~l~~~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          286 AEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNVNVYDISQ---PEPKLLRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCEEEEECSS---SSCEEEEEETTSCSSEEEEEECCCS
T ss_pred             ceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeEEEEECCC---CcceeeEEeccCCCCcEEEEecCCC
Confidence            468889998887655444334 999999999999998864  8899998653   32233332   23478999999998


Q ss_pred             C
Q 016318          292 E  292 (391)
Q Consensus       292 ~  292 (391)
                      +
T Consensus       360 ~  360 (361)
T 2oiz_A          360 G  360 (361)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.89  E-value=3.7e-07  Score=87.88  Aligned_cols=260  Identities=10%  Similarity=0.008  Sum_probs=146.6

Q ss_pred             cCCCeeEEE-ecCCEEEEEeCC----ceeEEEeecCCCcccCCCCCCccccccccC-ccCccceEEEecCCCcEEEEECC
Q 016318           78 PLGRGPYTG-VADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEH-ICGRPLGLRFDKKTGDLYIADAY  151 (391)
Q Consensus        78 ~~G~~ly~~-~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~P~gi~~d~~~g~L~V~d~~  151 (391)
                      .+++.+|+. ...++|+.+|..    +.+.....-+     |+         ..+. ...+|+++.+.+ +| +||+..+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~-----~~---------~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g  156 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEP-----EE---------VKKVSGYSRLHTVHCGP-DA-IYISALG  156 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECH-----HH---------HHHHHCEEEEEEEEECS-SC-EEEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeech-----hh---------cccccCCCcccceeECC-Ce-EEEEcCC
Confidence            567767764 456889999864    2222211100     00         0001 134899999998 67 9997554


Q ss_pred             C-------CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeC-CCcccch-hheeeecccCCCceEEEEeC
Q 016318          152 F-------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS-STNYQRR-NFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       152 ~-------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~-~~~~~~~-~~~~~~~~~~~~g~l~~~d~  222 (391)
                      .       ++..+|.+|.++..-... .+.+..+++++...+++++.++.. +.--... -+..+.++.....+|..||.
T Consensus       157 ~~~g~~~g~v~vlD~~T~~v~~~~~~-~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~  235 (462)
T 2ece_A          157 NEEGEGPGGILMLDHYSFEPLGKWEI-DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL  235 (462)
T ss_dssp             ETTSCSCCEEEEECTTTCCEEEECCS-BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred             CcCCCCCCeEEEEECCCCeEEEEEcc-CCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence            3       599999998875543321 223345677888899988666652 2100011 01111111244678999999


Q ss_pred             CCCeEEEeccC---CCCcceEEE--ccCCCEEEEEeC-----CCCeEEEEEeccccCccceee--c------cc------
Q 016318          223 TTKQTTVLLRN---LQFPNGLSL--SKDKSFFVFCEG-----SVGRLHKYWLIGEKAGNLEAF--A------IL------  278 (391)
Q Consensus       223 ~~~~~~~~~~~---~~~~ngia~--~~d~~~l~v~et-----~~~~I~~~~~~g~~~g~~~~~--~------~~------  278 (391)
                      ++++...-..-   ...|..|.+  +|++++.||+..     .++.|+++..++......+++  .      .+      
T Consensus       236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~  315 (462)
T 2ece_A          236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP  315 (462)
T ss_dssp             TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred             CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence            88765443322   146777766  999999999876     778888876653211111111  0      11      


Q ss_pred             ----CCCCCceEeCCCCC-EEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecC---ccceEEEEECCCCCE
Q 016318          279 ----PGYPDNVRTNEKGE-FWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGG---RLHAMAVKYSPEGKI  350 (391)
Q Consensus       279 ----~g~p~~i~~d~~G~-lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~v~~~d~~g~~  350 (391)
                          ++.|.+|.+++||+ +||+......+....+. .+...+++.+++........-...+   ...+.-++++++|+.
T Consensus       316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~-d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~  394 (462)
T 2ece_A          316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS-NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR  394 (462)
T ss_dssp             GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS-STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred             cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec-CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence                25688999999998 88888776554332221 2333455555443210000000000   013456778999998


Q ss_pred             EEEEe
Q 016318          351 LQVLE  355 (391)
Q Consensus       351 ~~~~~  355 (391)
                      +++-+
T Consensus       395 LyVaN  399 (462)
T 2ece_A          395 VYVTN  399 (462)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            88776

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.89  E-value=2.1e-06  Score=85.76  Aligned_cols=186  Identities=13%  Similarity=0.119  Sum_probs=119.9

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE-EEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L-~V~  148 (391)
                      ...++++.++|+.+.++..++.|..|+.+. ..+....                    .......++++.+ +++. ..+
T Consensus       223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~~~~--------------------~~~~~v~~v~~~~-d~~~l~~~  280 (577)
T 2ymu_A          223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT--------------------GHSSSVNGVAFRP-DGQTIASA  280 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEEC--------------------CCSSCEEEEEECT-TSSEEEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEEe--------------------cCCCCEEEEEEcC-CCCEEEEE
Confidence            456899999999889999999998887651 1111111                    0124466889998 5554 445


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      .....+..++..+...+.+...     ...+.++++.++|...++.+.                 ++.+..||..+.+..
T Consensus       281 ~~d~~i~~w~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~t~~~-----------------d~~i~~w~~~~~~~~  338 (577)
T 2ymu_A          281 SDDKTVKLWNRNGQLLQTLTGH-----SSSVWGVAFSPDGQTIASASD-----------------DKTVKLWNRNGQHLQ  338 (577)
T ss_dssp             ETTSCEEEEETTSCEEEEECCC-----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTSCEEE
T ss_pred             eCCCEEEEEeCCCcEEEEEecC-----CCCeEEEEECCCCCEEEEEeC-----------------CCeEEEEeCCCCeeE
Confidence            4444577788766544443221     124678899999987776543                 467888898877777


Q ss_pred             EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCch
Q 016318          229 VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       229 ~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      .+........+++++||++.+..+ ...+.|..++..+.   ....+....+....++++++|++.++....+.+
T Consensus       339 ~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~v~~~~~~~~---~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v  409 (577)
T 2ymu_A          339 TLTGHSSSVWGVAFSPDGQTIASA-SDDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  409 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTCC---EEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEcCCCC---EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEE
Confidence            665545567789999999976655 45567777765432   122222223345678899999866655444443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.88  E-value=3.2e-06  Score=77.56  Aligned_cols=193  Identities=15%  Similarity=0.076  Sum_probs=120.7

Q ss_pred             ccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      -..-.+++++++|+.+.++..+|.|..|+...........                    ........+++++ ++++++
T Consensus        23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------------------~h~~~v~~~~~~~-~~~~l~   81 (312)
T 4ery_A           23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------------------GHKLGISDVAWSS-DSNLLV   81 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------------------CCSSCEEEEEECT-TSSEEE
T ss_pred             CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc--------------------cCCCceEEEEEcC-CCCEEE
Confidence            3456789999999989999999999999875211111110                    1123456889998 566544


Q ss_pred             -EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          148 -ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       148 -~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                       +.....|..+|.++++........    ......+++.+++++.++.+.                 ++.+..||..+++
T Consensus        82 s~~~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~  140 (312)
T 4ery_A           82 SASDDKTLKIWDVSSGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSF-----------------DESVRIWDVKTGK  140 (312)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSSEEEEEET-----------------TSCEEEEETTTCC
T ss_pred             EECCCCEEEEEECCCCcEEEEEcCC----CCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCE
Confidence             444444888898877543322211    124677888999987777643                 5789999998776


Q ss_pred             EEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcCCCchh
Q 016318          227 TTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHCRRSLY  304 (391)
Q Consensus       227 ~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~~~~~~  304 (391)
                      ...... .......++++++++.++.+ ...+.|..+++...+  ....+.. .......++++++|++.++......+.
T Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  217 (312)
T 4ery_A          141 CLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK  217 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             EEEEecCCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence            544332 33456789999999966555 556788888865321  1112211 111234578899998776655544443


Q ss_pred             h
Q 016318          305 S  305 (391)
Q Consensus       305 ~  305 (391)
                      .
T Consensus       218 i  218 (312)
T 4ery_A          218 L  218 (312)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.88  E-value=1.3e-08  Score=96.36  Aligned_cols=159  Identities=15%  Similarity=0.122  Sum_probs=101.8

Q ss_pred             cCccceEEEecCCCc-EEEEECCCCeEEEeCCCCeeEEceec--cCCCcccCCcceeecC----CCCEEEEeCCCcccch
Q 016318          130 CGRPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATE--AEGVPLRFTNDLDIDD----EGNVYFTDSSTNYQRR  202 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~-L~V~d~~~gl~~~d~~~g~~~~~~~~--~~~~~~~~~~~l~~d~----~G~ly~td~~~~~~~~  202 (391)
                      ...|.+|++++ +|+ |||++....|+++++++...+.+...  ........+.+|++++    +|.||++.+...    
T Consensus        17 l~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~----   91 (353)
T 2g8s_A           17 LDHPWALAFLP-DNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG----   91 (353)
T ss_dssp             ESSEEEEEECS-TTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEEC----
T ss_pred             CCCcEEEEEcC-CCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCC----
Confidence            56799999999 788 99999765699998764322222211  0001123578999998    589999974310    


Q ss_pred             hheeeecccCCCceEEEEeCCCC-----eEEEeccC-------CCCcceEEEccCCCEEEEEeCC-------------CC
Q 016318          203 NFMQLVFSAEDTGRVLKYDPTTK-----QTTVLLRN-------LQFPNGLSLSKDKSFFVFCEGS-------------VG  257 (391)
Q Consensus       203 ~~~~~~~~~~~~g~l~~~d~~~~-----~~~~~~~~-------~~~~ngia~~~d~~~l~v~et~-------------~~  257 (391)
                            ..+....+|.+++.+.+     ..+++...       ...+++++++|||. ||++...             .+
T Consensus        92 ------~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g  164 (353)
T 2g8s_A           92 ------DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQG  164 (353)
T ss_dssp             ------SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTT
T ss_pred             ------CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCe
Confidence                  00001347888765432     23333322       34578999999995 9999532             35


Q ss_pred             eEEEEEecccc-C---------ccceeecccCCCCCceEeCC-CCCEEEEEcCC
Q 016318          258 RLHKYWLIGEK-A---------GNLEAFAILPGYPDNVRTNE-KGEFWVAIHCR  300 (391)
Q Consensus       258 ~I~~~~~~g~~-~---------g~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~  300 (391)
                      +|+|++.+|.. .         ...++++.--..|.++++|+ +|++|++....
T Consensus       165 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~  218 (353)
T 2g8s_A          165 KLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGP  218 (353)
T ss_dssp             EEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECS
T ss_pred             EEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCC
Confidence            89999987631 0         13455543112488999999 89999998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.88  E-value=1.5e-06  Score=82.11  Aligned_cols=203  Identities=13%  Similarity=0.057  Sum_probs=129.8

Q ss_pred             cCcceEEEccCC-CeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-
Q 016318           69 QGPESMAFDPLG-RGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-  144 (391)
Q Consensus        69 ~gPe~i~~d~~G-~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-  144 (391)
                      ..-.+++++++| +.++++..+|.|..|+..  .......                    .....+...++++++++++ 
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------~~~h~~~v~~~~~~~~~~~~  133 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ--------------------GMGPGDAITGMKFNQFNTNQ  133 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC--------------------CCSTTCBEEEEEEETTEEEE
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee--------------------cCCcCCceeEEEeCCCCCCE
Confidence            355688999999 889999999999999876  2211110                    0012355678999873334 


Q ss_pred             EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      |+.+.....|..+|..+.....+.....  ....+..+++.++|++.++.+.                 ++.+..||...
T Consensus       134 l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~  194 (383)
T 3ei3_B          134 LFVSSIRGATTLRDFSGSVIQVFAKTDS--WDYWYCCVDVSVSRQMLATGDS-----------------TGRLLLLGLDG  194 (383)
T ss_dssp             EEEEETTTEEEEEETTSCEEEEEECCCC--SSCCEEEEEEETTTTEEEEEET-----------------TSEEEEEETTS
T ss_pred             EEEEeCCCEEEEEECCCCceEEEeccCC--CCCCeEEEEECCCCCEEEEECC-----------------CCCEEEEECCC
Confidence            4555444458888988766655532211  1235678899999987766533                 57899999876


Q ss_pred             CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC-ccceeecccCCCCCceEeCC-CCCEEEEEcCCCc
Q 016318          225 KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA-GNLEAFAILPGYPDNVRTNE-KGEFWVAIHCRRS  302 (391)
Q Consensus       225 ~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~-g~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~  302 (391)
                      .....+.......+.++++|+++.++++-...+.|..+++...+. +.........+....+++++ +|++.++......
T Consensus       195 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~  274 (383)
T 3ei3_B          195 HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE  274 (383)
T ss_dssp             CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE
T ss_pred             CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc
Confidence            666666555567789999999984444445567888888764221 11111112334566789999 9987776655555


Q ss_pred             hhhhhhhc
Q 016318          303 LYSHLMAL  310 (391)
Q Consensus       303 ~~~~~l~~  310 (391)
                      +.++.+..
T Consensus       275 i~iwd~~~  282 (383)
T 3ei3_B          275 IRVYSSYD  282 (383)
T ss_dssp             EEEEETTB
T ss_pred             EEEEECCC
Confidence            54443433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.88  E-value=2.4e-07  Score=82.97  Aligned_cols=171  Identities=13%  Similarity=0.033  Sum_probs=109.5

Q ss_pred             ceEEEccCCCeeEEEecC-C--EEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCcc--ceEEEecCCCcEE
Q 016318           72 ESMAFDPLGRGPYTGVAD-G--RILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP--LGLRFDKKTGDLY  146 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~-g--~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P--~gi~~d~~~g~L~  146 (391)
                      +++.++ +|. +|.++.+ |  .|.++|.+.-+......                     ...++  .|++++  +++||
T Consensus        46 qGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~---------------------l~~~~FgeGit~~--g~~ly  100 (262)
T 3nol_A           46 EGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIE---------------------LGKRYFGEGISDW--KDKIV  100 (262)
T ss_dssp             EEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEE---------------------CCTTCCEEEEEEE--TTEEE
T ss_pred             ceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEe---------------------cCCccceeEEEEe--CCEEE
Confidence            788898 665 8877654 3  89999887322222211                     01234  456776  57999


Q ss_pred             EEECCCC-eEEEeCCCCeeE-EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          147 IADAYFG-LMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       147 V~d~~~g-l~~~d~~~g~~~-~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      ++++..+ ++++|+++.+.. .+...  +    ...+++.| .+.+|+++.                  +++|..+|+++
T Consensus       101 ~ltw~~~~v~v~D~~t~~~~~ti~~~--~----eG~glt~d-g~~L~~SdG------------------s~~i~~iDp~T  155 (262)
T 3nol_A          101 GLTWKNGLGFVWNIRNLRQVRSFNYD--G----EGWGLTHN-DQYLIMSDG------------------TPVLRFLDPES  155 (262)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECS--S----CCCCEEEC-SSCEEECCS------------------SSEEEEECTTT
T ss_pred             EEEeeCCEEEEEECccCcEEEEEECC--C----CceEEecC-CCEEEEECC------------------CCeEEEEcCCC
Confidence            9998766 999999887543 22211  1    22345543 347999883                  36899999998


Q ss_pred             CeEEEec------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC-------------CCCCce
Q 016318          225 KQTTVLL------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP-------------GYPDNV  285 (391)
Q Consensus       225 ~~~~~~~------~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~-------------g~p~~i  285 (391)
                      .+...-.      ..+..+|.+.+. +|+ ||++....+.|.+++.+.   ++..-..+++             ..|+||
T Consensus       156 ~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~t---G~V~~~Id~~~L~~~~~~~~~~~~vlNGI  230 (262)
T 3nol_A          156 LTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPET---GKVTGIIDLNGILAEAGPLPSPIDVLNGI  230 (262)
T ss_dssp             CSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTT---CBEEEEEECTTGGGGSCSCCSSCCCEEEE
T ss_pred             CeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCC---CcEEEEEECCcCccccccccCcCCceEEE
Confidence            7654322      123456777765 675 999988889999998543   3332222221             246889


Q ss_pred             EeCCCCC-EEEEE
Q 016318          286 RTNEKGE-FWVAI  297 (391)
Q Consensus       286 ~~d~~G~-lwva~  297 (391)
                      +.|++++ +||+.
T Consensus       231 A~dp~~~~lfVTG  243 (262)
T 3nol_A          231 AWDKEHHRLFVTG  243 (262)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEcCCCCEEEEEC
Confidence            9998765 88864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.88  E-value=2.2e-06  Score=85.49  Aligned_cols=187  Identities=12%  Similarity=0.119  Sum_probs=118.3

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      ...++++.++|+.+.++..++.|..|+..... +....                    .....+.++++++ +++.++..
T Consensus       305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~--------------------~~~~~v~~~~~s~-~g~~l~~~  362 (577)
T 2ymu_A          305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLT--------------------GHSSSVWGVAFSP-DGQTIASA  362 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEEC--------------------CCSSCEEEEEECT-TSSEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEEe--------------------CCCCCEEEEEECC-CCCEEEEE
Confidence            44678999999988999999999888866211 11110                    0124467889998 56554443


Q ss_pred             CCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          150 AYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       150 ~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ...| +..++..+..+..+...     ...+..++++++|+..++.+.                 ++.|..||.......
T Consensus       363 ~~dg~v~~~~~~~~~~~~~~~~-----~~~v~~~~~s~dg~~l~~~~~-----------------d~~v~~~~~~~~~~~  420 (577)
T 2ymu_A          363 SDDKTVKLWNRNGQLLQTLTGH-----SSSVRGVAFSPDGQTIASASD-----------------DKTVKLWNRNGQLLQ  420 (577)
T ss_dssp             ETTSEEEEEETTCCEEEEEECC-----SSCEEEEEECTTSSCEEEEET-----------------TSEEEEECTTCCEEE
T ss_pred             eCCCEEEEEcCCCCEEEEecCC-----CCCeEEEEECCCCCEEEEEeC-----------------CCEEEEEeCCCCEEE
Confidence            3444 77777665544444221     124678999999986666532                 467888887655555


Q ss_pred             EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCchh
Q 016318          229 VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLY  304 (391)
Q Consensus       229 ~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~  304 (391)
                      .+...-....+++++||++.+..+ ...+.|..++..+.   ....+....+....++++++|.+.++......+.
T Consensus       421 ~~~~~~~~v~~~~~s~d~~~l~~~-~~d~~v~~w~~~~~---~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~  492 (577)
T 2ymu_A          421 TLTGHSSSVWGVAFSPDDQTIASA-SDDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK  492 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTSC---EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             EecCCCCCeEEEEECCCCCEEEEE-cCCCEEEEEECCCC---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence            554444566789999999966655 45667877775442   1222222223446788999999777655554443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.86  E-value=2.7e-07  Score=82.63  Aligned_cols=156  Identities=16%  Similarity=0.174  Sum_probs=96.7

Q ss_pred             ceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccC
Q 016318          134 LGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      .|+.++  ++.||+++...| |.++|++++++..-.  .+.  ..+..+++++. ++||+++..                
T Consensus        58 qGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~--~~FgeGit~~g-~~Ly~ltw~----------------  114 (268)
T 3nok_A           58 QGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME--RLG--NIFAEGLASDG-ERLYQLTWT----------------  114 (268)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT--TCCEEEEEECS-SCEEEEESS----------------
T ss_pred             ceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC--CcceeEEEEeC-CEEEEEEcc----------------
Confidence            589997  589999998765 899999998764432  222  23556677763 499999854                


Q ss_pred             CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC-ccceeecc-cC-CCCCceEeCC
Q 016318          213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA-GNLEAFAI-LP-GYPDNVRTNE  289 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~-g~~~~~~~-~~-g~p~~i~~d~  289 (391)
                       ++.++.||+++.+...-..-.  +.|..+++|++.||+++ .+++|+.++.+..+. .+.++-.+ .+ ..++.+... 
T Consensus       115 -~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-  189 (268)
T 3nok_A          115 -EGLLFTWSGMPPQRERTTRYS--GEGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-  189 (268)
T ss_dssp             -SCEEEEEETTTTEEEEEEECS--SCCCCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             -CCEEEEEECCcCcEEEEEeCC--CceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-
Confidence             579999999988765433322  33444557888899997 588999998543211 11111111 00 123345554 


Q ss_pred             CCCEEEEEcCCCchhhhhhhcCccceeeeeec
Q 016318          290 KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKL  321 (391)
Q Consensus       290 ~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l  321 (391)
                      +|.+|++......+    +...|..++++..+
T Consensus       190 dG~lyanvw~s~~I----~vIDp~TG~V~~~I  217 (268)
T 3nok_A          190 NGVIYANIWHSSDV----LEIDPATGTVVGVI  217 (268)
T ss_dssp             TTEEEEEETTCSEE----EEECTTTCBEEEEE
T ss_pred             CCEEEEEECCCCeE----EEEeCCCCcEEEEE
Confidence            78999887654322    22344444444444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.86  E-value=1e-07  Score=92.23  Aligned_cols=209  Identities=11%  Similarity=0.015  Sum_probs=122.0

Q ss_pred             cCcceEEEccCCCeeEEEec----------CCEEEEEeCCceeEEEeec-CCCcccCCCCCCccccccccCccCccceEE
Q 016318           69 QGPESMAFDPLGRGPYTGVA----------DGRILFWDGLKWTDFAFTS-NNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~----------~g~I~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~  137 (391)
                      ..| +|++++||+.+|++..          ++.|..+|....+...... ...              ........|.+++
T Consensus       119 ~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~--------------~r~~~g~~P~~~~  183 (426)
T 3c75_H          119 FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA--------------PRFLVGTYQWMNA  183 (426)
T ss_dssp             SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC--------------CCCCBSCCGGGSE
T ss_pred             CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc--------------cccccCCCcceEE
Confidence            368 9999999999999873          5679999887333332210 000              0001235799999


Q ss_pred             EecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcc----eeecCCCCEEEEeCCCc-cc--------ch
Q 016318          138 FDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTND----LDIDDEGNVYFTDSSTN-YQ--------RR  202 (391)
Q Consensus       138 ~d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~----l~~d~~G~ly~td~~~~-~~--------~~  202 (391)
                      ++++++.|||++..  +.|.++|..++++..-.. ..+.....|.+    ++..++|++.+.+.... ..        ..
T Consensus       184 ~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~-v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~  262 (426)
T 3c75_H          184 LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD-VPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTE  262 (426)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCT
T ss_pred             EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE-cCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC
Confidence            99966689999864  449999999886543211 11111122333    56677887555543211 00        00


Q ss_pred             h-hee----------eecccCCCceEEEEeCCCCeEEEecc----------CCCCcce---EEEccCCCEEEEEeCC---
Q 016318          203 N-FMQ----------LVFSAEDTGRVLKYDPTTKQTTVLLR----------NLQFPNG---LSLSKDKSFFVFCEGS---  255 (391)
Q Consensus       203 ~-~~~----------~~~~~~~~g~l~~~d~~~~~~~~~~~----------~~~~~ng---ia~~~d~~~l~v~et~---  255 (391)
                      . -+.          .++-....++++.+|..+++..+...          ....|.|   +++++|++.+||+...   
T Consensus       263 ~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~  342 (426)
T 3c75_H          263 DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE  342 (426)
T ss_dssp             TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT
T ss_pred             CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc
Confidence            0 000          00000123567777776555443211          0012444   8999999999998641   


Q ss_pred             ------CCeEEEEEeccccCccceeecc--cCCCCCceEeCCCCC-EEEEEc
Q 016318          256 ------VGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVRTNEKGE-FWVAIH  298 (391)
Q Consensus       256 ------~~~I~~~~~~g~~~g~~~~~~~--~~g~p~~i~~d~~G~-lwva~~  298 (391)
                            .+.|+.++.+.     .++...  +++.|.+|.++++|+ +|+..+
T Consensus       343 gthk~~s~~VsVID~~T-----~kvv~~I~vg~~P~gia~spDg~~~lyv~n  389 (426)
T 3c75_H          343 WKHKAASRFVVVLNAET-----GERINKIELGHEIDSINVSQDAEPLLYALS  389 (426)
T ss_dssp             TCTTSCEEEEEEEETTT-----CCEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred             ccccCCCCEEEEEECCC-----CeEEEEEECCCCcCeEEEccCCCEEEEEEc
Confidence                  35799998543     233333  345699999999998 665555

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.85  E-value=3e-06  Score=79.16  Aligned_cols=192  Identities=7%  Similarity=-0.021  Sum_probs=116.2

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LY  146 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~  146 (391)
                      .-.+++++++|+.++++..++.|..|+..  .+.......                    ...+...++++++ +++ |+
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--------------------~h~~~v~~~~~~~-~~~~l~   68 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--------------------EHNGQVTGVDWAP-DSNRIV   68 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--------------------CCSSCEEEEEEET-TTTEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--------------------CCCCcccEEEEeC-CCCEEE
Confidence            45688999999988899899999999765  222222211                    1134567899998 555 55


Q ss_pred             EEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       147 V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      ++.....|..+|..+++.........  ....+..+++.++|+..++.+.                 ++.+..||..+++
T Consensus        69 ~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----------------d~~v~i~d~~~~~  129 (372)
T 1k8k_C           69 TCGTDRNAYVWTLKGRTWKPTLVILR--INRAARCVRWAPNEKKFAVGSG-----------------SRVISICYFEQEN  129 (372)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEECCC--CSSCEEEEEECTTSSEEEEEET-----------------TSSEEEEEEETTT
T ss_pred             EEcCCCeEEEEECCCCeeeeeEEeec--CCCceeEEEECCCCCEEEEEeC-----------------CCEEEEEEecCCC
Confidence            55544558888887775433221111  1235678899999976666533                 4667777765554


Q ss_pred             ----EEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecccc---------------Ccc-ceeecccCCCCCce
Q 016318          227 ----TTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK---------------AGN-LEAFAILPGYPDNV  285 (391)
Q Consensus       227 ----~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~---------------~g~-~~~~~~~~g~p~~i  285 (391)
                          ....... ......++++|+++.++.+ ...+.|..+++....               .++ ...+....+....+
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  208 (372)
T 1k8k_C          130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG-SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV  208 (372)
T ss_dssp             TEEEEEEECTTCCSCEEEEEECTTSSEEEEE-ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred             cceeeeeeecccCCCeeEEEEcCCCCEEEEE-cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE
Confidence                2233222 3456789999999966655 456778888754210               011 11121122345678


Q ss_pred             EeCCCCCEEEEEcCCCc
Q 016318          286 RTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       286 ~~d~~G~lwva~~~~~~  302 (391)
                      +++++|++.++......
T Consensus       209 ~~~~~~~~l~~~~~d~~  225 (372)
T 1k8k_C          209 CFSANGSRVAWVSHDST  225 (372)
T ss_dssp             EECSSSSEEEEEETTTE
T ss_pred             EECCCCCEEEEEeCCCE
Confidence            88899986665544433

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.85  E-value=2e-06  Score=80.34  Aligned_cols=188  Identities=11%  Similarity=0.015  Sum_probs=121.6

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCc----eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLK----WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ..++++.++|+.+.++..++.|..|+...    .......                    ....+....+.+.+ ++.++
T Consensus       100 v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~--------------------~~h~~~v~~~~~~~-~~~l~  158 (340)
T 1got_B          100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL--------------------AGHTGYLSCCRFLD-DNQIV  158 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE--------------------ECCSSCEEEEEEEE-TTEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe--------------------cCCCccEEEEEECC-CCcEE
Confidence            45788999999899999999999887651    1111111                    01124456677877 67777


Q ss_pred             EEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       147 V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      .+.....|..+|..+++.........    .....+++.++|+++++.+.                 ++.+..||..+++
T Consensus       159 s~s~d~~i~~wd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~sg~~-----------------d~~v~~wd~~~~~  217 (340)
T 1got_B          159 TSSGDTTCALWDIETGQQTTTFTGHT----GDVMSLSLAPDTRLFVSGAC-----------------DASAKLWDVREGM  217 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCS
T ss_pred             EEECCCcEEEEECCCCcEEEEEcCCC----CceEEEEECCCCCEEEEEeC-----------------CCcEEEEECCCCe
Confidence            77666668899998876443222111    24678899999998887643                 5789999988776


Q ss_pred             EEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCCCCCceEeCCCCCEEEEEcCCCch
Q 016318          227 TTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       227 ~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      ..... ......+.++++|+++.+..+ ...+.|..+++....  ....+..  .......++++++|++.++......+
T Consensus       218 ~~~~~~~h~~~v~~v~~~p~~~~l~s~-s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i  294 (340)
T 1got_B          218 CRQTFTGHESDINAICFFPNGNAFATG-SDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC  294 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             eEEEEcCCcCCEEEEEEcCCCCEEEEE-cCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECCCCeE
Confidence            54433 333467899999999966554 556788888765321  1112211  11123567889999977766554443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.82  E-value=5.9e-07  Score=86.45  Aligned_cols=196  Identities=11%  Similarity=0.053  Sum_probs=116.6

Q ss_pred             ccCcceEEEccCCCeeEEEecC------CEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC
Q 016318           68 IQGPESMAFDPLGRGPYTGVAD------GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~~------g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~  141 (391)
                      ...|..+...++| ++.+...+      |+|..+|....+........                 ....+.+..+.+.++
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~-----------------~~~~~~~Yd~~~~p~  198 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID-----------------RGDQYLAYDFWWNLP  198 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB-----------------CTTCCCCCCEEEETT
T ss_pred             CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC-----------------CCCccccceEEECCC
Confidence            4589999999999 55555554      78999998744444332100                 001233456777884


Q ss_pred             CCcEEEEEC-------------------CCCeEEEeCCCCeeEEceeccCCCcccCCcceee--cCCC-CEEEEeCCCcc
Q 016318          142 TGDLYIADA-------------------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI--DDEG-NVYFTDSSTNY  199 (391)
Q Consensus       142 ~g~L~V~d~-------------------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~--d~~G-~ly~td~~~~~  199 (391)
                      .+.++++++                   ...|..+|.+++++..-...  +.....|.+|.+  +++| ..|++..-+  
T Consensus       199 ~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v--g~~g~~P~~i~f~~~Pdg~~aYV~~e~~--  274 (462)
T 2ece_A          199 NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL--GEENRMALELRPLHDPTKLMGFINMVVS--  274 (462)
T ss_dssp             TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES--CTTEEEEEEEEECSSTTCCEEEEEEEEE--
T ss_pred             CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec--CCCCCccceeEeeECCCCCEEEEEEeee--
Confidence            444566553                   24499999987754322111  112235777755  8888 577776300  


Q ss_pred             cchhheeeecccCCCceEEEEeCCCCeEEEec-----c-----C-----------CCCcceEEEccCCCEEEEEeCCCCe
Q 016318          200 QRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-----R-----N-----------LQFPNGLSLSKDKSFFVFCEGSVGR  258 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-----~-----~-----------~~~~ngia~~~d~~~l~v~et~~~~  258 (391)
                                ...-++.|++|..+.++.+...     .     .           ...|.+|.+++||++|||+....+.
T Consensus       275 ----------~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~  344 (462)
T 2ece_A          275 ----------LKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE  344 (462)
T ss_dssp             ----------TTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE
T ss_pred             ----------ccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE
Confidence                      0001244543332234322111     0     0           2457899999999999999999999


Q ss_pred             EEEEEeccccCccceeecc-----------------cCCCCCceEeCCCCC-EEEEE
Q 016318          259 LHKYWLIGEKAGNLEAFAI-----------------LPGYPDNVRTNEKGE-FWVAI  297 (391)
Q Consensus       259 I~~~~~~g~~~g~~~~~~~-----------------~~g~p~~i~~d~~G~-lwva~  297 (391)
                      |..|++..+..  .+....                 ++|.|.++.++++|+ +||+.
T Consensus       345 VavfdV~d~~~--~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          345 VRQYDISNPFK--PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEEECSSTTS--CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEEEecCCCC--cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99999864321  221111                 224699999999998 66664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.79  E-value=4.8e-07  Score=89.95  Aligned_cols=266  Identities=13%  Similarity=0.065  Sum_probs=154.1

Q ss_pred             eccccccCcceEEEc--cCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEE-
Q 016318           63 KFLNQIQGPESMAFD--PLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF-  138 (391)
Q Consensus        63 ~~~~~~~gPe~i~~d--~~G~~ly~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~-  138 (391)
                      +.-|+...|.--..|  +||+.+|+... +++|.+++.+..+.....                   ..+....|+|+++ 
T Consensus        82 ~~~gd~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-------------------~ip~g~~phg~~~~  142 (595)
T 1fwx_A           82 HDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL-------------------EIPNAKGIHGLRPQ  142 (595)
T ss_dssp             CCCCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE-------------------ECSSCCSEEEEEEC
T ss_pred             cccCCCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEE-------------------eCCCCCCCcceeee
Confidence            334555555433322  27888888665 578999999843322211                   0011356999998 


Q ss_pred             e-cCCCcEEEEE-----------------CCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCc
Q 016318          139 D-KKTGDLYIAD-----------------AYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTN  198 (391)
Q Consensus       139 d-~~~g~L~V~d-----------------~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~  198 (391)
                      . ++.+.+|+++                 .+.+ +..+|.++.++.--.. ..+    .|.+++++++|. +|++...+.
T Consensus       143 ~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~-Vgg----~pd~~~~spdGk~~~vt~~~se  217 (595)
T 1fwx_A          143 KWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL-VSG----NLDNCDADYEGKWAFSTSYNSE  217 (595)
T ss_dssp             CSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE-ESS----CCCCEEECSSSSEEEEEESCTT
T ss_pred             ecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE-eCC----CccceEECCCCCEEEEEecCcc
Confidence            3 6567788884                 2223 7788988764332111 122    589999999985 666664331


Q ss_pred             cc---------chhhee---------eecccC--CCceEEEEeCCC--CeE-EEeccCCCCcceEEEccCCCEEEEEeCC
Q 016318          199 YQ---------RRNFMQ---------LVFSAE--DTGRVLKYDPTT--KQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGS  255 (391)
Q Consensus       199 ~~---------~~~~~~---------~~~~~~--~~g~l~~~d~~~--~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~  255 (391)
                      -.         ..+++.         .+-.++  --+++-.+|.++  ++. .........|.|+.++|||+++|+++..
T Consensus       218 ~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~  297 (595)
T 1fwx_A          218 KGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL  297 (595)
T ss_dssp             CCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT
T ss_pred             cCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC
Confidence            10         001000         000000  014588899887  332 2223334689999999999999999999


Q ss_pred             CCeEEEEEecccc------C-ccceeecccC--CCCCceEeCCCCCEEEEEcCCCchhhhhhhc----C--ccceeeeee
Q 016318          256 VGRLHKYWLIGEK------A-GNLEAFAILP--GYPDNVRTNEKGEFWVAIHCRRSLYSHLMAL----Y--PKIRHFLLK  320 (391)
Q Consensus       256 ~~~I~~~~~~g~~------~-g~~~~~~~~~--g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~----~--~~~~~~~~~  320 (391)
                      .++|..|+.+..+      . ....+..+.+  ..|..++++++|++|++..-...+..+.+..    +  ....+.+.+
T Consensus       298 s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~k  377 (595)
T 1fwx_A          298 SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDK  377 (595)
T ss_dssp             SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEE
T ss_pred             CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEE
Confidence            9999999976321      0 1112333322  3699999999999999987765554433322    0  012456666


Q ss_pred             cCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCC
Q 016318          321 LPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSK  358 (391)
Q Consensus       321 l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~  358 (391)
                      ++.....-....      +.-..++++|+.+++.+..+
T Consensus       378 idV~yqpGh~~~------~~g~t~~~DGk~l~~~Nk~s  409 (595)
T 1fwx_A          378 LDVHYQPGHLKT------VMGETLDATNDWLVCLSKFS  409 (595)
T ss_dssp             EECSSCEEEEEE------TTTTSTTCCSSEEEEEESCC
T ss_pred             eeccccccccee------ccceEeCCCCCEEEEcCCCC
Confidence            665432110100      01123568899888887655

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.77  E-value=4.6e-06  Score=80.41  Aligned_cols=144  Identities=12%  Similarity=0.095  Sum_probs=95.1

Q ss_pred             CccceEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhhee
Q 016318          131 GRPLGLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~  206 (391)
                      ....++++++++..|+.+....   .|+.+|.++++.+.+... .    .....+++.+||+ |+++.+.          
T Consensus       179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-~----~~~~~~~~spdg~~la~~~~~----------  243 (415)
T 2hqs_A          179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P----RHNGAPAFSPDGSKLAFALSK----------  243 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-S----SCEEEEEECTTSSEEEEEECT----------
T ss_pred             CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-C----CcccCEEEcCCCCEEEEEEec----------
Confidence            4466889998444465555443   499999998877655322 1    2467889999997 6656532          


Q ss_pred             eecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCc
Q 016318          207 LVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDN  284 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~  284 (391)
                           .++..|+.+|.++++...+.........++++|||+.|+++....  .+|+++++.+.   +...+....+....
T Consensus       244 -----~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~---~~~~l~~~~~~~~~  315 (415)
T 2hqs_A          244 -----TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG---APQRITWEGSQNQD  315 (415)
T ss_dssp             -----TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---CCEECCCSSSEEEE
T ss_pred             -----CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC---CEEEEecCCCcccC
Confidence                 123569999999988877665545667899999999888775433  37999987653   22222222233446


Q ss_pred             eEeCCCCCEEEEE
Q 016318          285 VRTNEKGEFWVAI  297 (391)
Q Consensus       285 i~~d~~G~lwva~  297 (391)
                      ++++++|+..+..
T Consensus       316 ~~~spdG~~l~~~  328 (415)
T 2hqs_A          316 ADVSSDGKFMVMV  328 (415)
T ss_dssp             EEECTTSSEEEEE
T ss_pred             eEECCCCCEEEEE
Confidence            7889999855443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.77  E-value=1.7e-06  Score=82.39  Aligned_cols=209  Identities=11%  Similarity=0.010  Sum_probs=115.4

Q ss_pred             cCcceEEEccCCCeeEEEec----------CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVA----------DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~----------~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~  138 (391)
                      .+| ++++++||+.+|++..          ++.|..+|....+......-.      +.       ........|.++++
T Consensus        67 ~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~------~~-------~~~~~g~~p~~~~~  132 (373)
T 2mad_H           67 FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP------DA-------PRFDVGPYSWMNAN  132 (373)
T ss_pred             CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC------Cc-------cccccCCCccceEE
Confidence            478 9999999999999863          467888988633332221100      00       00001246889999


Q ss_pred             ecCCCcEEEEECC--CCeEEEeCCCCeeEEc-eeccCCCcccCCcc----eeecCCCCEEEEeCCCccc-ch--------
Q 016318          139 DKKTGDLYIADAY--FGLMKVGPEGGLATSL-ATEAEGVPLRFTND----LDIDDEGNVYFTDSSTNYQ-RR--------  202 (391)
Q Consensus       139 d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~-~~~~~~~~~~~~~~----l~~d~~G~ly~td~~~~~~-~~--------  202 (391)
                      +++++.|||++..  ..|..+| +++++... .. ..+.....+.+    ++..++|.+.+.+...+.. ..        
T Consensus       133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~  210 (373)
T 2mad_H          133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA  210 (373)
T ss_pred             CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-CCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccC
Confidence            9966779999854  4599999 88865432 21 11110011111    3344566544443311000 00        


Q ss_pred             -hhee----------eecccCCCceEEEEeCCCCeEEEec----------cCCCCcce---EEEccCCCEEEEEeC----
Q 016318          203 -NFMQ----------LVFSAEDTGRVLKYDPTTKQTTVLL----------RNLQFPNG---LSLSKDKSFFVFCEG----  254 (391)
Q Consensus       203 -~~~~----------~~~~~~~~g~l~~~d~~~~~~~~~~----------~~~~~~ng---ia~~~d~~~l~v~et----  254 (391)
                       ..+.          .++-....+.++.+|..+++.++..          .....|.|   +++++|++.+|++..    
T Consensus       211 ~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~  290 (373)
T 2mad_H          211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA  290 (373)
T ss_pred             CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence             0000          0000012346777777654332211          01113555   889999999999754    


Q ss_pred             -----CCCeEEEEEeccccCccceeec--ccCCCCCceEeCCCCC-EEEEEc
Q 016318          255 -----SVGRLHKYWLIGEKAGNLEAFA--ILPGYPDNVRTNEKGE-FWVAIH  298 (391)
Q Consensus       255 -----~~~~I~~~~~~g~~~g~~~~~~--~~~g~p~~i~~d~~G~-lwva~~  298 (391)
                           ..+.|++++.+..     ++..  ..++.|.+|+++++|+ +|++..
T Consensus       291 ~~~~~~~~~V~VID~~t~-----~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          291 WKLHAAAKEVTSVTGLVG-----QTSSQISLGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             ccccCCCCeEEEEECCCC-----EEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence                 2357999986532     2222  3456799999999998 666554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.75  E-value=1.1e-06  Score=83.59  Aligned_cols=191  Identities=13%  Similarity=0.023  Sum_probs=102.5

Q ss_pred             cCcceEEEccCCCeeEEEec----------CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVA----------DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~----------~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~  138 (391)
                      .+|. +++++||+.+|++..          ++.|..||....+......-.     .  +      .......+|.++++
T Consensus        79 ~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~-----~--g------~r~~~g~~P~~~a~  144 (386)
T 3sjl_D           79 FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP-----D--A------PRFLVGTYPWMTSL  144 (386)
T ss_dssp             SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET-----T--C------CCCCBSCCGGGEEE
T ss_pred             CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECC-----C--c------cccccCCCCceEEE
Confidence            4686 999999999999863          467888988743333221100     0  0      00012357999999


Q ss_pred             ecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcc----eeecCCCCEEEEeCCCcccchhheeeecccC
Q 016318          139 DKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTND----LDIDDEGNVYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       139 d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~----l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      ++++..|||++..  +.|..+|..++++..-.. ..+....+|.+    +++.+||.+.+.+..                
T Consensus       145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~-v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~----------------  207 (386)
T 3sjl_D          145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYHIFPTAPDTFFMHCRDGSLAKVAFG----------------  207 (386)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEEEEEETTSCEEEEECC----------------
T ss_pred             cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE-CCCcceeecCCCceeEEECCCCCEEEEECC----------------
Confidence            9966679999863  459999999986543221 11111112322    244555554444321                


Q ss_pred             CCceEEEEeCCCCeEEEeccC--CCCcceEEE-ccCCCEEEEEeCCCCeEEEEEeccccC---ccceeecc-------cC
Q 016318          213 DTGRVLKYDPTTKQTTVLLRN--LQFPNGLSL-SKDKSFFVFCEGSVGRLHKYWLIGEKA---GNLEAFAI-------LP  279 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~--~~~~ngia~-~~d~~~l~v~et~~~~I~~~~~~g~~~---g~~~~~~~-------~~  279 (391)
                      ..+++..  ..+    ...+.  ....+..++ .++|+.+|++.  .++++.++..+...   ...++|..       .|
T Consensus       208 ~~g~v~~--~~~----~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p  279 (386)
T 3sjl_D          208 TEGTPEI--THT----EVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP  279 (386)
T ss_dssp             SSSCCEE--EEC----CCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE
T ss_pred             CCCeEEE--eec----ceeccccccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcceeecceeccccccccccccC
Confidence            1122211  000    01111  111122344 47887666654  57899999876432   12222221       12


Q ss_pred             CCCCceEeCCCCC-EEEEEc
Q 016318          280 GYPDNVRTNEKGE-FWVAIH  298 (391)
Q Consensus       280 g~p~~i~~d~~G~-lwva~~  298 (391)
                      +....+.++++++ +||++.
T Consensus       280 ~g~q~~a~~~~~~~lyV~~~  299 (386)
T 3sjl_D          280 GGWQQVAYHRALDRIYLLVD  299 (386)
T ss_dssp             CSSSCEEEETTTTEEEEEEE
T ss_pred             CCcceeeECCCCCeEEEEec
Confidence            2233477887666 999875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.74  E-value=3.6e-06  Score=75.45  Aligned_cols=183  Identities=11%  Similarity=0.006  Sum_probs=112.8

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCc-eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLK-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ...+++++++|+.++++. ++.|+.++... .......                   ..+....+..+++++++..|+++
T Consensus        43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-------------------~~~~~~~~~~~~~spdg~~l~~~  102 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-------------------TGFATICNNDHGISPDGALYAIS  102 (297)
T ss_dssp             CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-------------------CTTCCCBCSCCEECTTSSEEEEE
T ss_pred             ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-------------------cccccccccceEECCCCCEEEEE
Confidence            567899999999666654 78899997653 2111100                   00112445678999843345555


Q ss_pred             EC----CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          149 DA----YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       149 d~----~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      ..    ...|+.++..+++.+.+...      .....+++.++|+ ++++...               .+.-+|+.++..
T Consensus       103 ~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~~~  161 (297)
T 2ojh_A          103 DKVEFGKSAIYLLPSTGGTPRLMTKN------LPSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMDID  161 (297)
T ss_dssp             ECTTTSSCEEEEEETTCCCCEECCSS------SSEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEETT
T ss_pred             EeCCCCcceEEEEECCCCceEEeecC------CCccceEECCCCCEEEEEECC---------------CCceEEEEEECC
Confidence            42    23489999887766554321      1256678899986 5545421               112368888888


Q ss_pred             CCeEEEeccCCCCcceEEEccCCCEEEEEeC--CCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEE
Q 016318          224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEG--SVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et--~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva  296 (391)
                      +++...+.........++++||++.++++..  ...+||.++..+.   ....+.........+.++++|+..+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~  233 (297)
T 2ojh_A          162 SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---SVERITDSAYGDWFPHPSPSGDKVVF  233 (297)
T ss_dssp             TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---CEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred             CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC---CcEEEecCCcccCCeEECCCCCEEEE
Confidence            8887776655566788999999998877653  3456777765442   22233222223445788999985443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.74  E-value=1.5e-06  Score=84.03  Aligned_cols=195  Identities=14%  Similarity=0.146  Sum_probs=122.1

Q ss_pred             cceEEEcc-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           71 PESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        71 Pe~i~~d~-~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      -.+|++.| +++++.+|+.||.|..|+..  ....+..                    .....+...+|+|++.++++++
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~--------------------~~gH~~~V~~l~f~p~~~~~l~  181 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK--------------------GIGAGGSITGLKFNPLNTNQFY  181 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC--------------------CCSSSCCCCEEEECSSCTTEEE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE--------------------ccCCCCCEEEEEEeCCCCCEEE
Confidence            35789997 56778899999999999765  1111111                    1111345678999874566555


Q ss_pred             EECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          148 ADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       148 ~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      +....| |..+|.+++..+.+.....  .......++++++|++.++.+.                 +|.|..||.+++.
T Consensus       182 s~s~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~-----------------dg~i~~wd~~~~~  242 (435)
T 4e54_B          182 ASSMEGTTRLQDFKGNILRVFASSDT--INIWFCSLDVSASSRMVVTGDN-----------------VGNVILLNMDGKE  242 (435)
T ss_dssp             EECSSSCEEEEETTSCEEEEEECCSS--CSCCCCCEEEETTTTEEEEECS-----------------SSBEEEEESSSCB
T ss_pred             EEeCCCEEEEeeccCCceeEEeccCC--CCccEEEEEECCCCCEEEEEeC-----------------CCcEeeeccCcce
Confidence            545544 8888998877665543211  1234567889999988777643                 5789999987766


Q ss_pred             EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc---CCCCCceEeCCCCCEEEEEcCCCch
Q 016318          227 TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL---PGYPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       227 ~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~---~g~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      +..+...-...+.++++|+++.++++-...+.|..+++...+.  ...+...   .+....++++++|++.++......+
T Consensus       243 ~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i  320 (435)
T 4e54_B          243 LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG--KASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEI  320 (435)
T ss_dssp             CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS--SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCE
T ss_pred             eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc--cceEEEeeeccccccceeECCCCCeeEEEcCCCEE
Confidence            5444433345678999999876666655566777777653211  1111111   1223457788899877665555444


Q ss_pred             hhh
Q 016318          304 YSH  306 (391)
Q Consensus       304 ~~~  306 (391)
                      .++
T Consensus       321 ~iw  323 (435)
T 4e54_B          321 RVY  323 (435)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.73  E-value=3e-06  Score=78.60  Aligned_cols=186  Identities=13%  Similarity=0.088  Sum_probs=120.8

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE-EE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YI  147 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L-~V  147 (391)
                      ...++++.++|+.+.+++.+|.|..++.. .-..+...                     ........+++++ ++++ ..
T Consensus       124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~---------------------~~~~~v~~~~~sp-dg~~las  181 (321)
T 3ow8_A          124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD---------------------TRGKFILSIAYSP-DGKYLAS  181 (321)
T ss_dssp             CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE---------------------CSSSCEEEEEECT-TSSEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec---------------------CCCceEEEEEECC-CCCEEEE
Confidence            34578999999999999999999999876 21111111                     1123456889998 5665 44


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      +....-|..+|..+++........    ....+.+++.++|++.++.+.                 ++.|..||..+++.
T Consensus       182 g~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~spd~~~l~s~s~-----------------dg~i~iwd~~~~~~  240 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKLLHTLEGH----AMPIRSLTFSPDSQLLVTASD-----------------DGYIKIYDVQHANL  240 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCC----SSCCCEEEECTTSCEEEEECT-----------------TSCEEEEETTTCCE
T ss_pred             EcCCCeEEEEECCCCcEEEEEccc----CCceeEEEEcCCCCEEEEEcC-----------------CCeEEEEECCCcce
Confidence            444445888999887643322211    134688999999988777643                 57899999887765


Q ss_pred             EEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCC
Q 016318          228 TVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       228 ~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~  301 (391)
                      .... ........++++|+++.++.+ ...+.|..+++...  .....+....+....++++++|+..++.....
T Consensus       241 ~~~~~~h~~~v~~~~~sp~~~~l~s~-s~D~~v~iwd~~~~--~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~  312 (321)
T 3ow8_A          241 AGTLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVWDVGTR--TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ  312 (321)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             eEEEcCCCCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCC--EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            4433 333456789999999965544 55677888876532  11222322233456788999998776655543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.73  E-value=1.9e-05  Score=72.22  Aligned_cols=155  Identities=10%  Similarity=0.057  Sum_probs=102.5

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE-EE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L-~V  147 (391)
                      ....++++.++|+.++++..++.|..|+...........                    ........+.+++ ++++ +.
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~~l~s  124 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP-QSNLIVS  124 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSSCEEEEEECS-SSSEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc--------------------CCCCCEEEEEEcC-CCCEEEE
Confidence            356689999999999999999999999876222221110                    0123456788988 5554 44


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      +.....|..+|..+++........    ......+++.++|++.++.+.                 +|.+..||..+++.
T Consensus       125 ~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~~wd~~~~~~  183 (312)
T 4ery_A          125 GSFDESVRIWDVKTGKCLKTLPAH----SDPVSAVHFNRDGSLIVSSSY-----------------DGLCRIWDTASGQC  183 (312)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCE
T ss_pred             EeCCCcEEEEECCCCEEEEEecCC----CCcEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCce
Confidence            544455889998877543222111    124677889999987776543                 57899999887765


Q ss_pred             EE-ecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          228 TV-LLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       228 ~~-~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .. +.. .....+.++++|++++++.+ +..+.|..+++..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~  223 (312)
T 4ery_A          184 LKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK  223 (312)
T ss_dssp             EEEECCSSCCCEEEEEECTTSSEEEEE-ETTTEEEEEETTT
T ss_pred             eeEEeccCCCceEEEEECCCCCEEEEE-cCCCeEEEEECCC
Confidence            33 322 22345678999999976665 5567888888653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.71  E-value=8e-06  Score=77.67  Aligned_cols=147  Identities=16%  Similarity=0.042  Sum_probs=97.3

Q ss_pred             EEccCCCeeEEEec-----CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           75 AFDPLGRGPYTGVA-----DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        75 ~~d~~G~~ly~~~~-----~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      +..|+|+.+|+...     ++.|..+|....+.+...                     +.+..|. +++++++..|||++
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I---------------------~vG~~P~-va~spDG~~lyVan   96 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI---------------------DGGFLPN-PVVADDGSFIAHAS   96 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE---------------------EECSSCE-EEECTTSSCEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEE---------------------ECCCCCc-EEECCCCCEEEEEc
Confidence            34578888999876     579999998844443322                     1245575 99999666799998


Q ss_pred             CC----------CCeEEEeCCCCeeEEceeccCCC---cccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCc
Q 016318          150 AY----------FGLMKVGPEGGLATSLATEAEGV---PLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       150 ~~----------~gl~~~d~~~g~~~~~~~~~~~~---~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      .+          +.|..+|+.+.++..-.....+.   ....|.++++++||+ +|+++..                +.+
T Consensus        97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----------------~~~  160 (386)
T 3sjl_D           97 TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAP  160 (386)
T ss_dssp             EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSC
T ss_pred             ccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----------------CCC
Confidence            42          33999999988654322111111   134799999999994 8998732                246


Q ss_pred             eEEEEeCCCCeEEEeccC----CCCcce----EEEccCCCEEEEEeCCCCeE
Q 016318          216 RVLKYDPTTKQTTVLLRN----LQFPNG----LSLSKDKSFFVFCEGSVGRL  259 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~~~----~~~~ng----ia~~~d~~~l~v~et~~~~I  259 (391)
                      .|..+|.++++...-..-    ..+|.|    +++++||+.+|++-...+++
T Consensus       161 ~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          161 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             eEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence            899999999876443221    224555    47889999777764333555

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.71  E-value=3.8e-07  Score=86.57  Aligned_cols=210  Identities=8%  Similarity=-0.135  Sum_probs=118.4

Q ss_pred             cCcceEEEccCCCeeEEEe----------cCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318           69 QGPESMAFDPLGRGPYTGV----------ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~----------~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~  138 (391)
                      ..| ++++++||+.+|++.          .++.|..+|....+......-...             .-.....+|.++++
T Consensus        66 ~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~-------------~~~~~g~~P~~ia~  131 (368)
T 1mda_H           66 FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-------------PRFSVGPRVHIIGN  131 (368)
T ss_dssp             TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-------------CSCCBSCCTTSEEE
T ss_pred             CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc-------------cccccCCCcceEEE
Confidence            368 899999999999987          357899999884333332210000             00012357999999


Q ss_pred             ecCCCcEEEEECC-C-CeEE--EeCCCCeeEEceeccCCCcccCCcc----eeecCCCCEEEEeCCC------cccch--
Q 016318          139 DKKTGDLYIADAY-F-GLMK--VGPEGGLATSLATEAEGVPLRFTND----LDIDDEGNVYFTDSST------NYQRR--  202 (391)
Q Consensus       139 d~~~g~L~V~d~~-~-gl~~--~d~~~g~~~~~~~~~~~~~~~~~~~----l~~d~~G~ly~td~~~------~~~~~--  202 (391)
                      +++++.|||++.. . .+..  +|+.+  ++.+..  .+.....|.+    ++..++|.+.+.+...      +....  
T Consensus       132 SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v--~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t  207 (368)
T 1mda_H          132 CASSACLLFFLFGSSAAAGLSVPGASD--DQLTKS--ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT  207 (368)
T ss_dssp             CTTSSCEEEEECSSSCEEEEEETTTEE--EEEEEC--SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC
T ss_pred             cCCCCEEEEEccCCCCeEEEEEEchhh--ceEEEC--CCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee
Confidence            9966689999865 3 3777  78876  343321  1111112222    3444566544444321      00000  


Q ss_pred             hhe------ee------ecccCCCceEEEEeCCCCeEEEecc----------CCCCcce---EEEccCCCEEEEEeC---
Q 016318          203 NFM------QL------VFSAEDTGRVLKYDPTTKQTTVLLR----------NLQFPNG---LSLSKDKSFFVFCEG---  254 (391)
Q Consensus       203 ~~~------~~------~~~~~~~g~l~~~d~~~~~~~~~~~----------~~~~~ng---ia~~~d~~~l~v~et---  254 (391)
                      ..+      ..      ++-... +.+..+|..+++.++...          ....|.|   +++++|++.+||+..   
T Consensus       208 ~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~  286 (368)
T 1mda_H          208 GAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS  286 (368)
T ss_dssp             TTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred             eeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecccc
Confidence            000      00      000001 567778876544333211          1123555   899999999999754   


Q ss_pred             C-----CCeEEEEEeccccCccceeecc--cCCCCCceEeCCCCC-EEEEEc-CCCc
Q 016318          255 S-----VGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVRTNEKGE-FWVAIH-CRRS  302 (391)
Q Consensus       255 ~-----~~~I~~~~~~g~~~g~~~~~~~--~~g~p~~i~~d~~G~-lwva~~-~~~~  302 (391)
                      .     ...+..++.+.     .++...  ..+.|.+|+++++|+ +|++.. ....
T Consensus       287 ~~~~~~~~~~~ViD~~t-----~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~  338 (368)
T 1mda_H          287 RSCLAAAENTSSVTASV-----GQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV  338 (368)
T ss_dssp             SCTTSCEEEEEEEESSS-----CCEEECCEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred             CcccccCCCEEEEECCC-----CeEEEEEECCCCcceEEECCCCCEEEEEccCCCCe
Confidence            2     24677887543     233333  334699999999997 899887 3433

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.70  E-value=9e-08  Score=94.20  Aligned_cols=76  Identities=18%  Similarity=0.237  Sum_probs=58.9

Q ss_pred             CCcccCCcceeecCCCCEEE-EeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC--CCCcceEEEccCCCEE
Q 016318          173 GVPLRFTNDLDIDDEGNVYF-TDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFF  249 (391)
Q Consensus       173 ~~~~~~~~~l~~d~~G~ly~-td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~ngia~~~d~~~l  249 (391)
                      +.++..|++|++|++|+||| +|.+..  .    ...++...+..++++++.+++++.+...  ...+||++++||++.|
T Consensus       472 ~~~fnsPDnL~fd~~G~LWf~TD~~~~--~----~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktL  545 (592)
T 4a9v_A          472 QNMFNSPDGLGFDKAGRLWILTDGDSS--N----AGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTL  545 (592)
T ss_dssp             TTCCCCEEEEEECTTCCEEEEECCCCC--C----SGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEE
T ss_pred             cCccCCCCceEECCCCCEEEEeCCCcC--c----cccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEE
Confidence            34689999999999999999 675421  1    1122344566899999999999888754  3579999999999999


Q ss_pred             EEEeC
Q 016318          250 VFCEG  254 (391)
Q Consensus       250 ~v~et  254 (391)
                      ||+-.
T Consensus       546 fV~vQ  550 (592)
T 4a9v_A          546 FVGIQ  550 (592)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99854

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.69  E-value=1.2e-05  Score=76.45  Aligned_cols=196  Identities=8%  Similarity=0.008  Sum_probs=119.2

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCc----eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLK----WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      ...++++.++|+.++++..+|.|..|+...    ......                    .....+....++++++++++
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~--------------------~~~h~~~v~~~~~~~~~~~~  128 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMAR--------------------FSNHSSSVKTVKFNAKQDNV  128 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEE--------------------CCCSSSCCCEEEECSSSTTB
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhh--------------------ccCCccceEEEEEcCCCCCE
Confidence            456889999999899999999999997652    111111                    11123456789999842555


Q ss_pred             EEEECC-CCeEEEeCCCCe------eEEceeccCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeeecccCCCceE
Q 016318          146 YIADAY-FGLMKVGPEGGL------ATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRV  217 (391)
Q Consensus       146 ~V~d~~-~gl~~~d~~~g~------~~~~~~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g~l  217 (391)
                      +++... ..|..+|..+++      ......... .....+..+++.++ ++++++.+.                 +|.|
T Consensus       129 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~v  190 (416)
T 2pm9_A          129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM-SSVDEVISLAWNQSLAHVFASAGS-----------------SNFA  190 (416)
T ss_dssp             EEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC-CSSCCCCEEEECSSCTTEEEEESS-----------------SSCE
T ss_pred             EEEEcCCCeEEEEECCCCcccccccccccccccc-CCCCCeeEEEeCCCCCcEEEEEcC-----------------CCCE
Confidence            444444 458888887764      111111111 11235788999998 677777543                 5789


Q ss_pred             EEEeCCCCeEEEeccC-------CCCcceEEEccCCCEEEEEeCCCC---eEEEEEeccccCccceeec-ccCCCCCceE
Q 016318          218 LKYDPTTKQTTVLLRN-------LQFPNGLSLSKDKSFFVFCEGSVG---RLHKYWLIGEKAGNLEAFA-ILPGYPDNVR  286 (391)
Q Consensus       218 ~~~d~~~~~~~~~~~~-------~~~~ngia~~~d~~~l~v~et~~~---~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~  286 (391)
                      ..||..+++.......       ....+.++++|++..++++....+   .|..+++.... .....+. ...+....++
T Consensus       191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~  269 (416)
T 2pm9_A          191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQGHQKGILSLD  269 (416)
T ss_dssp             EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCCSCCSSCEEEEE
T ss_pred             EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEeecCccCceeEEE
Confidence            9999988776544332       345678999999743444445455   78888876421 1112222 2223456688


Q ss_pred             eCC-CCCEEEEEcCCCchh
Q 016318          287 TNE-KGEFWVAIHCRRSLY  304 (391)
Q Consensus       287 ~d~-~G~lwva~~~~~~~~  304 (391)
                      +++ +|+++++......+.
T Consensus       270 ~s~~~~~~l~s~~~dg~v~  288 (416)
T 2pm9_A          270 WCHQDEHLLLSSGRDNTVL  288 (416)
T ss_dssp             ECSSCSSCEEEEESSSEEE
T ss_pred             eCCCCCCeEEEEeCCCCEE
Confidence            888 787666555444443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.69  E-value=9.4e-06  Score=75.92  Aligned_cols=194  Identities=13%  Similarity=0.044  Sum_probs=115.3

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE-EEE
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YIA  148 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L-~V~  148 (391)
                      .+++++++|+.+.++..|+.|..|+..  .+......                   ..........+++++ ++++ ..+
T Consensus        20 ~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~sp-~g~~l~s~   79 (345)
T 3fm0_A           20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL-------------------SEGHQRTVRKVAWSP-CGNYLASA   79 (345)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE-------------------CSSCSSCEEEEEECT-TSSEEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee-------------------ccccCCcEEEEEECC-CCCEEEEE
Confidence            378999999989999999998888654  11111100                   011124467899998 5654 444


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE-
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT-  227 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-  227 (391)
                      .....+..++..++..+.+... .+ ....++.+++.++|++.++.+.                 ++.+..||..+++. 
T Consensus        80 s~D~~v~iw~~~~~~~~~~~~~-~~-h~~~v~~v~~sp~~~~l~s~s~-----------------D~~v~iwd~~~~~~~  140 (345)
T 3fm0_A           80 SFDATTCIWKKNQDDFECVTTL-EG-HENEVKSVAWAPSGNLLATCSR-----------------DKSVWVWEVDEEDEY  140 (345)
T ss_dssp             ETTSCEEEEEECCC-EEEEEEE-CC-CSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEEECTTSCE
T ss_pred             ECCCcEEEEEccCCCeEEEEEc-cC-CCCCceEEEEeCCCCEEEEEEC-----------------CCeEEEEECCCCCCe
Confidence            4444577777666543332211 11 1235688999999988777643                 56788888765432 


Q ss_pred             ---EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCchh
Q 016318          228 ---TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLY  304 (391)
Q Consensus       228 ---~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~  304 (391)
                         ..+.......+.++++|+++.+..+ ...+.|..++...........+....+....++++++|++.++....+.+.
T Consensus       141 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~-s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~  219 (345)
T 3fm0_A          141 ECVSVLNSHTQDVKHVVWHPSQELLASA-SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR  219 (345)
T ss_dssp             EEEEEECCCCSCEEEEEECSSSSCEEEE-ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEEEecCcCCCeEEEEECCCCCEEEEE-eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEE
Confidence               2222333456789999999966555 556677777654321101111221223345788999998777665555544


Q ss_pred             h
Q 016318          305 S  305 (391)
Q Consensus       305 ~  305 (391)
                      +
T Consensus       220 i  220 (345)
T 3fm0_A          220 I  220 (345)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.68  E-value=2.1e-06  Score=83.97  Aligned_cols=175  Identities=14%  Similarity=0.123  Sum_probs=104.3

Q ss_pred             cccCcceEEEccCCC-eeEEEecCCEEEEEeCC-ce--eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-
Q 016318           67 QIQGPESMAFDPLGR-GPYTGVADGRILFWDGL-KW--TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-  141 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~-~ly~~~~~g~I~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-  141 (391)
                      .+..|.+|++.++|. .+|++...|+|++++.+ ..  ..+......   ..++        ......+-++||+++++ 
T Consensus        12 gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~---~~~g--------~~~~~e~Gllgia~~P~f   80 (463)
T 2wg3_C           12 GLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKL---VQSG--------IKGGDERGLLSLAFHPNY   80 (463)
T ss_dssp             EESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTT---BCCC--------CSSSCCCSEEEEEECTTH
T ss_pred             CCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcce---eccC--------ccccCCCcceeeEeCCCC
Confidence            478999999999984 48888899999999765 21  122221100   0000        00001245789999973 


Q ss_pred             --CCcEEEEECC-------------CCeEEEeCCCC--------eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCc
Q 016318          142 --TGDLYIADAY-------------FGLMKVGPEGG--------LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTN  198 (391)
Q Consensus       142 --~g~L~V~d~~-------------~gl~~~d~~~g--------~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~  198 (391)
                        ++.|||+-+.             ..|.++....+        ..+.+.........-+...|++++||+|||+.....
T Consensus        81 ~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           81 KKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             HHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             cCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence              4789998542             24666655321        123332221111223567799999999999963321


Q ss_pred             ccc--hhheeeecccCCCceEEEEeCCCC--------------------eEEEeccCCCCcceEEEccC-----CC-EEE
Q 016318          199 YQR--RNFMQLVFSAEDTGRVLKYDPTTK--------------------QTTVLLRNLQFPNGLSLSKD-----KS-FFV  250 (391)
Q Consensus       199 ~~~--~~~~~~~~~~~~~g~l~~~d~~~~--------------------~~~~~~~~~~~~ngia~~~d-----~~-~l~  250 (391)
                      ...  .....+  .....|.|+|+|++++                    ..+++..++..|.|++++++     |+ ++|
T Consensus       161 ~~~~~~~~~q~--~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~  238 (463)
T 2wg3_C          161 ITLDDMEEMDG--LSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTIL  238 (463)
T ss_dssp             CCHHHHHHCTT--CCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEE
T ss_pred             CCCCccccccC--cCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEE
Confidence            100  000000  1233588999999863                    24567788899999999997     33 577


Q ss_pred             EEeC
Q 016318          251 FCEG  254 (391)
Q Consensus       251 v~et  254 (391)
                      .+|.
T Consensus       239 ~~D~  242 (463)
T 2wg3_C          239 CSDS  242 (463)
T ss_dssp             EECC
T ss_pred             eccc
Confidence            7775

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.68  E-value=4.7e-06  Score=83.75  Aligned_cols=198  Identities=11%  Similarity=-0.007  Sum_probs=123.1

Q ss_pred             EccCCCeeEEE-ecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCe
Q 016318           76 FDPLGRGPYTG-VADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (391)
Q Consensus        76 ~d~~G~~ly~~-~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl  154 (391)
                      .|+.+. +|+. ..++.|..+|....+.+....                     ....|+++.+++++..|||++....|
T Consensus       163 ~d~~~~-~~V~~~~~~~V~viD~~t~~v~~~i~---------------------~g~~p~~v~~SpDGr~lyv~~~dg~V  220 (567)
T 1qks_A          163 WDLENL-FSVTLRDAGQIALIDGSTYEIKTVLD---------------------TGYAVHISRLSASGRYLFVIGRDGKV  220 (567)
T ss_dssp             CCGGGE-EEEEETTTTEEEEEETTTCCEEEEEE---------------------CSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             cCCCce-EEEEeCCCCeEEEEECCCCeEEEEEe---------------------CCCCccceEECCCCCEEEEEcCCCeE
Confidence            444344 5554 456899999987333322211                     23568999999955568999866669


Q ss_pred             EEEeCC--CCeeEEceeccCCCcccCCcceeec----CCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          155 MKVGPE--GGLATSLATEAEGVPLRFTNDLDID----DEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       155 ~~~d~~--~g~~~~~~~~~~~~~~~~~~~l~~d----~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ..+|..  ++++.  .....|   ..|.+++++    +|| .+|+++..                 .+.+..+|..+.+.
T Consensus       221 ~viD~~~~t~~~v--~~i~~G---~~P~~ia~s~~~~pDGk~l~v~n~~-----------------~~~v~ViD~~t~~~  278 (567)
T 1qks_A          221 NMIDLWMKEPTTV--AEIKIG---SEARSIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEP  278 (567)
T ss_dssp             EEEETTSSSCCEE--EEEECC---SEEEEEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCE
T ss_pred             EEEECCCCCCcEe--EEEecC---CCCceeEEccccCCCCCEEEEEEcc-----------------CCeEEEEECCCCcE
Confidence            999995  55332  221122   358899999    588 58887632                 46888999888765


Q ss_pred             EEecc--C----------CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceee-cccCCCCCceEeCCCCC-E
Q 016318          228 TVLLR--N----------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF-AILPGYPDNVRTNEKGE-F  293 (391)
Q Consensus       228 ~~~~~--~----------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~-~~~~g~p~~i~~d~~G~-l  293 (391)
                      .....  +          .....++..++++..++++....+.|+.++....+  ...+- .....+|.++.++++|+ +
T Consensus       279 ~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~--~~~v~~i~~~~~~~d~~~~pdgr~~  356 (567)
T 1qks_A          279 KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN--NLKTTEISAERFLHDGGLDGSHRYF  356 (567)
T ss_dssp             EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS--EEEEEEEECCSSEEEEEECTTSCEE
T ss_pred             EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc--cceeeeeeccccccCceECCCCCEE
Confidence            44321  1          01335788888888788887778999999865432  11111 11223577889999998 5


Q ss_pred             EEEEcCCCchhhhhhhcCccceeeeeecCc
Q 016318          294 WVAIHCRRSLYSHLMALYPKIRHFLLKLPI  323 (391)
Q Consensus       294 wva~~~~~~~~~~~l~~~~~~~~~~~~l~~  323 (391)
                      |++......+..    .....++++..++.
T Consensus       357 ~va~~~sn~V~V----iD~~t~kl~~~i~v  382 (567)
T 1qks_A          357 ITAANARNKLVV----IDTKEGKLVAIEDT  382 (567)
T ss_dssp             EEEEGGGTEEEE----EETTTTEEEEEEEC
T ss_pred             EEEeCCCCeEEE----EECCCCcEEEEEec
Confidence            676655444322    12334555555543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.67  E-value=1.9e-05  Score=72.33  Aligned_cols=158  Identities=10%  Similarity=0.056  Sum_probs=102.1

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-  144 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-  144 (391)
                      +.-..-.+++++|+|+.+.++..||.|..|+...........                    ........+++.+ +++ 
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~~   69 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ--------------------VTETPVRAGKFIA-RKNW   69 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------CCSSCEEEEEEEG-GGTE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee--------------------ccCCcEEEEEEeC-CCCE
Confidence            333456789999999999999999999999876222221111                    0112345778888 555 


Q ss_pred             EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      |..+.....|..+|..+++........    ....+.+++.+++.+.++.+.                 ++.|..||..+
T Consensus        70 l~s~s~d~~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~sgs~-----------------D~~v~lWd~~~  128 (304)
T 2ynn_A           70 IIVGSDDFRIRVFNYNTGEKVVDFEAH----PDYIRSIAVHPTKPYVLSGSD-----------------DLTVKLWNWEN  128 (304)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSSEEEEEET-----------------TSCEEEEEGGG
T ss_pred             EEEECCCCEEEEEECCCCcEEEEEeCC----CCcEEEEEEcCCCCEEEEECC-----------------CCeEEEEECCC
Confidence            455544445888898877543322221    135788999999987777643                 57888898776


Q ss_pred             C-eEEE-eccCCCCcceEEEcc-CCCEEEEEeCCCCeEEEEEecc
Q 016318          225 K-QTTV-LLRNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       225 ~-~~~~-~~~~~~~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      + .... +...-...+.++++| +++ ++++-...+.|..+++..
T Consensus       129 ~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          129 NWALEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             TTEEEEEECCCCSCEEEEEECTTCTT-EEEEEETTSEEEEEETTC
T ss_pred             CcchhhhhcccCCcEEEEEECCCCCC-EEEEEeCCCeEEEEECCC
Confidence            6 3333 333334567899998 566 445546667888887643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.66  E-value=6.9e-06  Score=76.32  Aligned_cols=187  Identities=15%  Similarity=0.042  Sum_probs=112.9

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE-EEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L-~V~  148 (391)
                      ...+++++++|+.++++..+|.|..|+...........                     ....+..+++++ +++. +++
T Consensus        76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------~~~~v~~~~~~~-~~~~l~~~  133 (369)
T 3zwl_B           76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK---------------------SPVPVKRVEFSP-CGNYFLAI  133 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---------------------CSSCEEEEEECT-TSSEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---------------------cCCCeEEEEEcc-CCCEEEEe
Confidence            45688999999989999999999999876222221110                     134567889998 5554 444


Q ss_pred             ECC-----CCeEEEeCCCCeeEEceeccC---------CCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318          149 DAY-----FGLMKVGPEGGLATSLATEAE---------GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       149 d~~-----~gl~~~d~~~g~~~~~~~~~~---------~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ...     ..|..+|..++..........         .........++++++|+..++.+.                 +
T Consensus       134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------d  196 (369)
T 3zwl_B          134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----------------D  196 (369)
T ss_dssp             ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----------------T
T ss_pred             cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----------------C
Confidence            433     346666654432111000000         001125677888888876665432                 5


Q ss_pred             ceEEEEeCCC-CeEEE-eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC
Q 016318          215 GRVLKYDPTT-KQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  292 (391)
Q Consensus       215 g~l~~~d~~~-~~~~~-~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~  292 (391)
                      |.|..||..+ ++... +.........++++|+++.++.+ +..+.|..+++...+  ....+. .......++++++|.
T Consensus       197 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~--~~~~~~-~~~~~~~~~~~~~~~  272 (369)
T 3zwl_B          197 GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS-SRDTNSFLVDVSTLQ--VLKKYE-TDCPLNTAVITPLKE  272 (369)
T ss_dssp             SEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCC--EEEEEE-CSSCEEEEEECSSSS
T ss_pred             CEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe-cCCceEEEEECCCCc--eeeeec-CCCCceeEEecCCCc
Confidence            7899999987 44433 33334466789999999977666 556788888865421  111221 233456788899998


Q ss_pred             EEEEEcC
Q 016318          293 FWVAIHC  299 (391)
Q Consensus       293 lwva~~~  299 (391)
                      +.++...
T Consensus       273 ~l~~~~~  279 (369)
T 3zwl_B          273 FIILGGG  279 (369)
T ss_dssp             EEEEEEC
T ss_pred             eEEEeec
Confidence            6555443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.65  E-value=5.9e-06  Score=78.15  Aligned_cols=95  Identities=7%  Similarity=0.039  Sum_probs=58.5

Q ss_pred             CCCeeEEEe------cCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC-
Q 016318           79 LGRGPYTGV------ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY-  151 (391)
Q Consensus        79 ~G~~ly~~~------~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~-  151 (391)
                      +++.+|+..      .++.|+++|....+......                     ....| ++++++++..|||++.. 
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~---------------------~g~~p-~i~~spdg~~lyv~~~~~   71 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVP---------------------TAFNG-HVQVSNDGKKIYTMTTYH   71 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEE---------------------CCEEE-EEEECTTSSEEEEEEEEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEec---------------------CCCCC-ceEECCCCCEEEEEEecc
Confidence            344466654      35789999876322222111                     13458 99999966679999741 


Q ss_pred             ---------CCeEEEeCCCCeeEEceeccCC--CcccCCcceeecCCC-CEEEEeC
Q 016318          152 ---------FGLMKVGPEGGLATSLATEAEG--VPLRFTNDLDIDDEG-NVYFTDS  195 (391)
Q Consensus       152 ---------~gl~~~d~~~g~~~~~~~~~~~--~~~~~~~~l~~d~~G-~ly~td~  195 (391)
                               ..|..+|..+.+...-.....+  .....|.++++++|| .+|+++.
T Consensus        72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~  127 (361)
T 2oiz_A           72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA  127 (361)
T ss_dssp             TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE
T ss_pred             cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECC
Confidence                     2289999987654322111111  012479999999999 5888763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.65  E-value=1.4e-05  Score=76.27  Aligned_cols=154  Identities=7%  Similarity=0.038  Sum_probs=99.8

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~V  147 (391)
                      ....+++++++|+.++++..+|.|..|+........                    ... .........+.+ +++ |.+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~--------------------~~~-~~~~~~~~~~~~-~~~~l~~  114 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK--------------------MLK-RADYTAVDTAKL-QMRRFIL  114 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT--------------------TSC-SCCEEEEEEECS-SSCEEEE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceee--------------------EEe-cCCceEEEEEec-CCCEEEE
Confidence            345589999999999999999999999875211100                    000 011122234566 455 555


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      +.....|..+|..+++........    ...+..+++.++|++.++.+.                 ++.+..||..+++.
T Consensus       115 ~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~-----------------d~~i~iwd~~~~~~  173 (420)
T 3vl1_A          115 GTTEGDIKVLDSNFNLQREIDQAH----VSEITKLKFFPSGEALISSSQ-----------------DMQLKIWSVKDGSN  173 (420)
T ss_dssp             EETTSCEEEECTTSCEEEEETTSS----SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCC
T ss_pred             EECCCCEEEEeCCCcceeeecccc----cCccEEEEECCCCCEEEEEeC-----------------CCeEEEEeCCCCcC
Confidence            554455889998887654432221    235788999999987766543                 57899999877654


Q ss_pred             E-EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          228 T-VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       228 ~-~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      . .+.........++++|+++.++.+ ...+.|..+++..
T Consensus       174 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~  212 (420)
T 3vl1_A          174 PRTLIGHRATVTDIAIIDRGRNVLSA-SLDGTIRLWECGT  212 (420)
T ss_dssp             CEEEECCSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTT
T ss_pred             ceEEcCCCCcEEEEEEcCCCCEEEEE-cCCCcEEEeECCC
Confidence            3 333334466789999999966655 5566788887653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.65  E-value=1.1e-05  Score=72.22  Aligned_cols=146  Identities=13%  Similarity=0.102  Sum_probs=92.9

Q ss_pred             CccceEEEecCCCcEEEEECCCCeEEEeCCC-CeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEG-GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~-g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~  209 (391)
                      +.+.++++++ +++.++......|+.+|.++ ++...+....   ....+.++++.++|+..++....            
T Consensus        42 ~~v~~~~~sp-dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~------------  105 (297)
T 2ojh_A           42 ELFEAPNWSP-DGKYLLLNSEGLLYRLSLAGDPSPEKVDTGF---ATICNNDHGISPDGALYAISDKV------------  105 (297)
T ss_dssp             SCCEEEEECT-TSSEEEEEETTEEEEEESSSCCSCEECCCTT---CCCBCSCCEECTTSSEEEEEECT------------
T ss_pred             cceEeeEECC-CCCEEEEEcCCeEEEEeCCCCCCceEecccc---ccccccceEECCCCCEEEEEEeC------------
Confidence            4466889998 56655444455699999988 7666543221   12356789999999755554210            


Q ss_pred             ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCC--eEEEEEeccccCccceeecccCCCCCceEe
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG--RLHKYWLIGEKAGNLEAFAILPGYPDNVRT  287 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~--~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~  287 (391)
                       ......|+.++..+++.+.+... ...+.++++||++.++++....+  +||.++..+   +....+...++.+..+..
T Consensus       106 -~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~  180 (297)
T 2ojh_A          106 -EFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS---GVETRLTHGEGRNDGPDY  180 (297)
T ss_dssp             -TTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT---CCEEECCCSSSCEEEEEE
T ss_pred             -CCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC---CcceEcccCCCccccceE
Confidence             11346899999888776665433 24678899999998876544444  566665543   223333333345567889


Q ss_pred             CCCCC-EEEEE
Q 016318          288 NEKGE-FWVAI  297 (391)
Q Consensus       288 d~~G~-lwva~  297 (391)
                      +++|+ ++++.
T Consensus       181 s~dg~~l~~~~  191 (297)
T 2ojh_A          181 SPDGRWIYFNS  191 (297)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCEEEEEe
Confidence            99998 44443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.63  E-value=1.4e-05  Score=75.94  Aligned_cols=112  Identities=9%  Similarity=-0.071  Sum_probs=70.0

Q ss_pred             cCCCeeEEEec-C-C---EEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC-
Q 016318           78 PLGRGPYTGVA-D-G---RILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY-  151 (391)
Q Consensus        78 ~~G~~ly~~~~-~-g---~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~-  151 (391)
                      ++++.+|+... + .   .|..+|....+.....                     +.+..| ++++++++..|||++.. 
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i---------------------~~g~~p-~i~~spDg~~lyv~n~~~   87 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV---------------------NGGFLP-NPVAAHSGSEFALASTSF   87 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEe---------------------cCCCCC-CeEECCCCCEEEEEeccc
Confidence            56666777654 2 2   7888887733333221                     123457 99999966679999742 


Q ss_pred             ---------CCeEEEeCCCCeeEEceecc-CCC--cccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEE
Q 016318          152 ---------FGLMKVGPEGGLATSLATEA-EGV--PLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVL  218 (391)
Q Consensus       152 ---------~gl~~~d~~~g~~~~~~~~~-~~~--~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~  218 (391)
                               +.|..+|+.+.+...-.... ...  ....|.++++++|| .+|++...                ..+.|.
T Consensus        88 ~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----------------~~~~v~  151 (373)
T 2mad_H           88 SRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----------------AGPAVG  151 (373)
T ss_pred             cccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC----------------CCCeEE
Confidence                     23889999876543211111 010  02468899999998 58888632                135688


Q ss_pred             EEeCCCCeEE
Q 016318          219 KYDPTTKQTT  228 (391)
Q Consensus       219 ~~d~~~~~~~  228 (391)
                      .+| ++++..
T Consensus       152 viD-~t~~~~  160 (373)
T 2mad_H          152 LVV-QGGSSD  160 (373)
T ss_pred             EEE-CCCCEE
Confidence            888 777654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.63  E-value=8.8e-06  Score=75.05  Aligned_cols=176  Identities=7%  Similarity=0.107  Sum_probs=108.4

Q ss_pred             EEecCCCcEEEEE---CC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeeccc
Q 016318          137 RFDKKTGDLYIAD---AY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       137 ~~d~~~g~L~V~d---~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      .+..+++.||.++   .. ..|++++.++...+.+.....         .+++++| .||+++.+               
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~---------~~~~~~g~~iy~t~~g---------------  165 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL---------FTCNTSDRYFYYNNPK---------------  165 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC---------CCSEEETTEEEEECTT---------------
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc---------eEeeEECCEEEEEeCC---------------
Confidence            4444467899988   23 349999999877776653311         2345544 79999853               


Q ss_pred             CCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC-CeEEEEEeccccCccceeecccCCCCCceEeCCC
Q 016318          212 EDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK  290 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~-~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~  290 (391)
                        ...|++.+.+++..+.+..+   +....++|++++||+++... .+|.|.+++|..   .+++.+- ..|   .++++
T Consensus       166 --~~~Iy~~~l~g~~~~~l~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~---~~~Lt~~-~~~---~~~~~  233 (302)
T 3s25_A          166 --NGQLYRYDTASQSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN---PVVLTEA-NIE---HYNVY  233 (302)
T ss_dssp             --TCCEEEEETTTTEEEEEECS---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCC---CEECSCS-CEE---EEEEE
T ss_pred             --CceEEEEECCCCCEEEEeCC---CccceeeecCCEEEEEEcCCCcEEEEEECCCCC---eEEEeCC-Ccc---eEEEC
Confidence              36899999888877766543   22345679999999998643 689999998842   3333321 112   24444


Q ss_pred             CC-EEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEE
Q 016318          291 GE-FWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVE  369 (391)
Q Consensus       291 G~-lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~  369 (391)
                      |. +|.+....                                     ...+...+.+|...+.+..  +.    +..+.
T Consensus       234 g~~Iy~~~~~~-------------------------------------~~~i~~~~~DG~~r~~l~~--~~----~~~i~  270 (302)
T 3s25_A          234 GSLIFYQRGGD-------------------------------------NPALCVVKNDGTGFKELAK--GE----FCNIN  270 (302)
T ss_dssp             TTEEEEEECSS-------------------------------------SCEEEEEETTSCCCEEEEE--SC----EEEEE
T ss_pred             CCEEEEEECCC-------------------------------------CcEEEEEECCCCccEEeeC--Cc----cceEE
Confidence            44 44332221                                     0234555666653333322  11    22466


Q ss_pred             EECCEEEEecCCCCeEEEEeCC
Q 016318          370 EKDGKLWMGSVLMPFVAVYDLS  391 (391)
Q Consensus       370 ~~~g~Lylgs~~~~~i~~~~~~  391 (391)
                      ..+++||........|.+++++
T Consensus       271 i~~d~Iy~td~~~~~i~~~~~d  292 (302)
T 3s25_A          271 VTSQYVYFTDFVSNKEYCTSTQ  292 (302)
T ss_dssp             ECSSEEEEEETTTCCEEEEESS
T ss_pred             EeCCEEEEEECCCCeEEEEECC
Confidence            6889999999888888888764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.62  E-value=5.7e-05  Score=71.88  Aligned_cols=151  Identities=16%  Similarity=0.090  Sum_probs=98.6

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EEEEEC
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADA  150 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~V~d~  150 (391)
                      .++++.++|+.+.++..|+.|..|+...........                    ........+++++ +++ |+.+..
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~h~~~v~~~~~~p-~~~~l~s~s~  185 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ--------------------GHEQDIYSLDYFP-SGDKLVSGSG  185 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEECT-TSSEEEEEET
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc--------------------cCCCCEEEEEEcC-CCCEEEEecC
Confidence            478999999999999999999999876322221111                    1124467889998 455 444544


Q ss_pred             CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                      ...|..+|..+++........     .....+++.+ +|++.++.+.                 ++.+..||..+++...
T Consensus       186 d~~v~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~s~-----------------d~~v~iwd~~~~~~~~  243 (393)
T 1erj_A          186 DRTVRIWDLRTGQCSLTLSIE-----DGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVE  243 (393)
T ss_dssp             TSEEEEEETTTTEEEEEEECS-----SCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEE
T ss_pred             CCcEEEEECCCCeeEEEEEcC-----CCcEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCcEEE
Confidence            444888899887654332211     2356778887 7877776543                 5788889988776543


Q ss_pred             ecc--------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          230 LLR--------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       230 ~~~--------~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ...        .......++++||++.++.+ ...+.|..+++..
T Consensus       244 ~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~d~~v~~wd~~~  287 (393)
T 1erj_A          244 RLDSENESGTGHKDSVYSVVFTRDGQSVVSG-SLDRSVKLWNLQN  287 (393)
T ss_dssp             EEC------CCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEEC--
T ss_pred             eecccccCCCCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEECCC
Confidence            221        12245689999999966554 5567888887653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.62  E-value=4.4e-06  Score=78.48  Aligned_cols=150  Identities=10%  Similarity=0.027  Sum_probs=92.1

Q ss_pred             cceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEcee-ccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~-~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      ...++|.+ ++.|.++...+.|..+|.++++...... ...+ .-...+.+++.++|+..++.+.               
T Consensus        85 v~~~~~s~-d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~-H~~~V~~v~~spdg~~l~sgs~---------------  147 (344)
T 4gqb_B           85 VADLTWVG-ERGILVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLSSGTQAVSGSK---------------  147 (344)
T ss_dssp             EEEEEEET-TTEEEEEETTSEEEEEEECTTSSCEEEEEEEEC-CSSCEEEEEECTTSSEEEEEET---------------
T ss_pred             EEEEEEeC-CCeEEEEECCCEEEEEeccCCCceeEeeccccC-CCCCEEEEEECCCCCEEEEEeC---------------
Confidence            56889998 6778877655557778887764322111 1111 1135788999999988777643               


Q ss_pred             CCCceEEEEeCCCCeEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCC-CCCceEeC
Q 016318          212 EDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPG-YPDNVRTN  288 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g-~p~~i~~d  288 (391)
                        ++.|..||.++++......+ -...+.+++++++..++++-...+.|..+++...+.  ...+. ...+ .+..+++.
T Consensus       148 --d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~  223 (344)
T 4gqb_B          148 --DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWH  223 (344)
T ss_dssp             --TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEEC
T ss_pred             --CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeec
Confidence              57899999988876544433 345678999999876777666677888887654211  11121 1111 24457777


Q ss_pred             CC-CCEEEEEcCCCch
Q 016318          289 EK-GEFWVAIHCRRSL  303 (391)
Q Consensus       289 ~~-G~lwva~~~~~~~  303 (391)
                      ++ ++++++......+
T Consensus       224 p~~~~~l~sg~~dg~v  239 (344)
T 4gqb_B          224 PQQSEVFVFGDENGTV  239 (344)
T ss_dssp             SSCTTEEEEEETTSEE
T ss_pred             CCCCcceEEeccCCcE
Confidence            64 4566544444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.62  E-value=5.1e-06  Score=78.21  Aligned_cols=153  Identities=11%  Similarity=0.107  Sum_probs=100.0

Q ss_pred             cceEEEecCCCcEEEEEC------------CCC-eEEEeCC--CCeeEEceecc--CCCcccCCcceeecC--CC--CEE
Q 016318          133 PLGLRFDKKTGDLYIADA------------YFG-LMKVGPE--GGLATSLATEA--EGVPLRFTNDLDIDD--EG--NVY  191 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~------------~~g-l~~~d~~--~g~~~~~~~~~--~~~~~~~~~~l~~d~--~G--~ly  191 (391)
                      |-.|.+++ +|.+|++..            ..| |+++|++  +++.+.+....  .......|.+|.+.+  +|  +||
T Consensus        52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            45677777 788888861            344 9999987  34555553221  111234788888744  45  588


Q ss_pred             EEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec----cCCCCcceEEEccCCCEEEEEeC-------------
Q 016318          192 FTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL----RNLQFPNGLSLSKDKSFFVFCEG-------------  254 (391)
Q Consensus       192 ~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~----~~~~~~ngia~~~d~~~l~v~et-------------  254 (391)
                      +.+...             ....-.++++++.++....+.    ..+..||.++++++|+ +|+++.             
T Consensus       131 Vvnh~~-------------~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~  196 (355)
T 3sre_A          131 VVNHPG-------------SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEM  196 (355)
T ss_dssp             EEECST-------------TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHH
T ss_pred             EEECCC-------------CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchh
Confidence            988541             112235888998876654432    3467899999999998 777754             


Q ss_pred             ----CCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEcCCCchhh
Q 016318          255 ----SVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCRRSLYS  305 (391)
Q Consensus       255 ----~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~  305 (391)
                          ..++|++++.     ++.+...+--..|++|+++++|+ +|++....+.++.
T Consensus       197 ~~~~~~g~vyr~d~-----~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~  247 (355)
T 3sre_A          197 HLGLAWSFVTYYSP-----NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHV  247 (355)
T ss_dssp             HTTCCCEEEEEECT-----TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             hccCCccEEEEEEC-----CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEE
Confidence                2357888863     23444443224699999999995 9999877665544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.61  E-value=2.2e-05  Score=73.60  Aligned_cols=189  Identities=10%  Similarity=0.035  Sum_probs=114.0

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCC--c-eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      -.++++.+++. +.+++.+|.|..|+..  + .......                   .....+...+++|++ ++++++
T Consensus        85 v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~-------------------~~~H~~~V~~v~~sp-dg~~l~  143 (344)
T 4gqb_B           85 VADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFC-------------------KYEHDDIVSTVSVLS-SGTQAV  143 (344)
T ss_dssp             EEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEE-------------------EECCSSCEEEEEECT-TSSEEE
T ss_pred             EEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeecc-------------------ccCCCCCEEEEEECC-CCCEEE
Confidence            45788988876 8899999999988765  1 1111110                   001124567899998 566544


Q ss_pred             -EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          148 -ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       148 -~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                       +....-|..+|..+++........    ....+.+++.+++ +++++.+.                 ++.|..||..++
T Consensus       144 sgs~d~~i~iwd~~~~~~~~~~~~h----~~~V~~~~~~~~~~~~l~s~s~-----------------D~~v~iwd~~~~  202 (344)
T 4gqb_B          144 SGSKDICIKVWDLAQQVVLSSYRAH----AAQVTCVAASPHKDSVFLSCSE-----------------DNRILLWDTRCP  202 (344)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTSS
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCc----CCceEEEEecCCCCCceeeecc-----------------cccccccccccc
Confidence             444455888999887654322211    1346788888887 57666533                 578999999877


Q ss_pred             eEEEecc---CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEcCCC
Q 016318          226 QTTVLLR---NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCRR  301 (391)
Q Consensus       226 ~~~~~~~---~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~  301 (391)
                      +......   .....+.++++|++..++++-..++.|..+++...+  ....+....+....++++++|. +.++.....
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~  280 (344)
T 4gqb_B          203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS--CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC  280 (344)
T ss_dssp             SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence            6543321   123467899998665466665667788888865321  1122222223345688888885 444443434


Q ss_pred             ch
Q 016318          302 SL  303 (391)
Q Consensus       302 ~~  303 (391)
                      .+
T Consensus       281 ~i  282 (344)
T 4gqb_B          281 SL  282 (344)
T ss_dssp             CE
T ss_pred             eE
Confidence            43

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.61  E-value=3.1e-05  Score=72.14  Aligned_cols=196  Identities=11%  Similarity=0.056  Sum_probs=117.6

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      +....-.+++++++|+.+.+++.||.|..|+...........                    ........+++++ ++++
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--------------------~~~~~v~~~~~s~-~~~~  111 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP--------------------LRSSWVMTCAYAP-SGNY  111 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--------------------CSSSCEEEEEECT-TSSE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee--------------------cCCccEEEEEECC-CCCE
Confidence            333455688999999999999999999999876222111110                    0123456788998 5665


Q ss_pred             EEEECC-CCeEEEeCCCCe--eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          146 YIADAY-FGLMKVGPEGGL--ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       146 ~V~d~~-~gl~~~d~~~g~--~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      +++... ..+..++..++.  .+.. ....+. ......+.+.+++.+..+..                  ++.+..||.
T Consensus       112 l~s~~~d~~v~iw~~~~~~~~~~~~-~~~~~h-~~~v~~~~~~~~~~l~s~s~------------------d~~i~~wd~  171 (340)
T 1got_B          112 VACGGLDNICSIYNLKTREGNVRVS-RELAGH-TGYLSCCRFLDDNQIVTSSG------------------DTTCALWDI  171 (340)
T ss_dssp             EEEEETTCEEEEEETTTCSBSCEEE-EEEECC-SSCEEEEEEEETTEEEEEET------------------TSCEEEEET
T ss_pred             EEEEeCCCeEEEEECccCCCcceeE-EEecCC-CccEEEEEECCCCcEEEEEC------------------CCcEEEEEC
Confidence            444334 447777776542  1111 111111 12345566666666544432                  578999999


Q ss_pred             CCCeEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCC
Q 016318          223 TTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       223 ~~~~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~  301 (391)
                      .+++...... .-...+.++++|+++.+ ++-...+.|..+++...  .....+....+....++++++|+++++.....
T Consensus       172 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~sg~~d~~v~~wd~~~~--~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~  248 (340)
T 1got_B          172 ETGQQTTTFTGHTGDVMSLSLAPDTRLF-VSGACDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTC--SEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCcEEEEEcCCCCceEEEEECCCCCEE-EEEeCCCcEEEEECCCC--eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence            8887654433 33456789999999954 45456678888876532  11222322233456788999999777666555


Q ss_pred             chhh
Q 016318          302 SLYS  305 (391)
Q Consensus       302 ~~~~  305 (391)
                      .+.+
T Consensus       249 ~v~i  252 (340)
T 1got_B          249 TCRL  252 (340)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            5444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.61  E-value=9.9e-06  Score=71.76  Aligned_cols=152  Identities=18%  Similarity=0.162  Sum_probs=103.6

Q ss_pred             ccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc--CCCCcceEEEccCCCEEEEEe
Q 016318          176 LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR--NLQFPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       176 ~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--~~~~~ngia~~~d~~~l~v~e  253 (391)
                      ..|..++.++. +.||+++..               .+...|.++|++++++..-..  .-.+.-|+++  +++.||+..
T Consensus        20 ~~ftqGL~~~~-~~LyestG~---------------~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~lt   81 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGE---------------TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLT   81 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECC---------------TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEE
T ss_pred             ccccccEEEEC-CEEEEECCC---------------CCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEE
Confidence            35778999986 799999743               224589999999998765443  2335556665  566799998


Q ss_pred             CCCCeEEEEEeccccCccceeecc--cCCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEE
Q 016318          254 GSVGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLI  331 (391)
Q Consensus       254 t~~~~I~~~~~~g~~~g~~~~~~~--~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~  331 (391)
                      ...+++++|+.+.     .+....  .++.+.+++.| .+.+|++..+                                
T Consensus        82 w~~~~v~v~D~~t-----l~~~~ti~~~~~Gwglt~d-g~~L~vSdgs--------------------------------  123 (243)
T 3mbr_X           82 WRNHEGFVYDLAT-----LTPRARFRYPGEGWALTSD-DSHLYMSDGT--------------------------------  123 (243)
T ss_dssp             SSSSEEEEEETTT-----TEEEEEEECSSCCCEEEEC-SSCEEEECSS--------------------------------
T ss_pred             eeCCEEEEEECCc-----CcEEEEEeCCCCceEEeeC-CCEEEEECCC--------------------------------
Confidence            8899999998543     233222  34556777765 3569998643                                


Q ss_pred             eecCccceEEEEECCC-CCEEEEEeC-CCCCeeeceeEEEEECCEEEEecCCCCeEEEEeC
Q 016318          332 HVGGRLHAMAVKYSPE-GKILQVLED-SKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  390 (391)
Q Consensus       332 ~~~~~~~~~v~~~d~~-g~~~~~~~~-~~g~~~~~is~~~~~~g~Lylgs~~~~~i~~~~~  390 (391)
                             ..+..+|+. .+++....- .+|..+..+.++...+|+||......+.|.|++.
T Consensus       124 -------~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp  177 (243)
T 3mbr_X          124 -------AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDP  177 (243)
T ss_dssp             -------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECT
T ss_pred             -------CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEEC
Confidence                   235667764 455555543 2455555566666678999999989999999874

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.60  E-value=9.6e-06  Score=83.31  Aligned_cols=148  Identities=11%  Similarity=0.094  Sum_probs=92.9

Q ss_pred             CccceEEEecCCCcEEEEECCC-----CeEEEeCCCC-eeEEceeccCCCcccCCcceeecC--CCCEEEEeCCCcccch
Q 016318          131 GRPLGLRFDKKTGDLYIADAYF-----GLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDD--EGNVYFTDSSTNYQRR  202 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~-----gl~~~d~~~g-~~~~~~~~~~~~~~~~~~~l~~d~--~G~ly~td~~~~~~~~  202 (391)
                      ..+..+++++++..|+++....     .|+.+|..++ ..+.+............+.+++.+  +|+++++...      
T Consensus       258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~------  331 (706)
T 2z3z_A          258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR------  331 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT------
T ss_pred             eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc------
Confidence            3456789998433477754433     4899999988 665554322211112346789999  9986555422      


Q ss_pred             hheeeecccCCCceEEEEeCCCCeEEEeccCCCCcce-EEEccCCCEEEEEeCCCC----eEEEEEeccccCccceeecc
Q 016318          203 NFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNG-LSLSKDKSFFVFCEGSVG----RLHKYWLIGEKAGNLEAFAI  277 (391)
Q Consensus       203 ~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng-ia~~~d~~~l~v~et~~~----~I~~~~~~g~~~g~~~~~~~  277 (391)
                               .+..+|+.++.+++..+.+..+...... ++++||++.|+++....+    +|+++++++.   +.+.+..
T Consensus       332 ---------~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~---~~~~l~~  399 (706)
T 2z3z_A          332 ---------DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG---KTKDLTP  399 (706)
T ss_dssp             ---------TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC---CCEESCC
T ss_pred             ---------CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC---CceeccC
Confidence                     1235788999777777666544333344 789999998988866544    8888886652   2222222


Q ss_pred             cCCCCCceEeCCCCCEEEEE
Q 016318          278 LPGYPDNVRTNEKGEFWVAI  297 (391)
Q Consensus       278 ~~g~p~~i~~d~~G~lwva~  297 (391)
                       .+....++++++|+.++..
T Consensus       400 -~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          400 -ESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             -SSSEEEEEECTTSSEEEEE
T ss_pred             -CCceEEEEECCCCCEEEEE
Confidence             1224567889999866544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.59  E-value=4.6e-06  Score=86.17  Aligned_cols=160  Identities=12%  Similarity=0.025  Sum_probs=93.7

Q ss_pred             cCcceEEEccCCCeeEEEec-CC-----EEEEEeCC--ceeEEEeecCCC--cccCCCCCCccccccccCccCccceEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVA-DG-----RILFWDGL--KWTDFAFTSNNR--SELCNPKPIATSYLKNEHICGRPLGLRF  138 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~-~g-----~I~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~P~gi~~  138 (391)
                      ..+.++++++||+.++++.. ++     .|+.++.+  +...........  +........................+++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            35778999999998888777 77     89999876  332222111000  0000000000000000000012457889


Q ss_pred             ecCCCcEEEEECCCCeEEEeCCCC---eeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCC
Q 016318          139 DKKTGDLYIADAYFGLMKVGPEGG---LATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       139 d~~~g~L~V~d~~~gl~~~d~~~g---~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ++++..|+++.. ..|+.+|.+++   +.+.+...     ...+..+++++||+ |.++.                   +
T Consensus       117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~-----~~~~~~~~~SPDG~~la~~~-------------------~  171 (741)
T 2ecf_A          117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHG-----EGFATDAKLSPKGGFVSFIR-------------------G  171 (741)
T ss_dssp             CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCS-----SSCEEEEEECTTSSEEEEEE-------------------T
T ss_pred             CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccC-----CcccccccCCCCCCEEEEEe-------------------C
Confidence            994334565553 55999999887   55544322     12467789999997 44443                   2


Q ss_pred             ceEEEEeCCCCeEEEeccCCCC-----------------cceEEEccCCCEEEEEe
Q 016318          215 GRVLKYDPTTKQTTVLLRNLQF-----------------PNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~~~~-----------------~ngia~~~d~~~l~v~e  253 (391)
                      +.|+.+|..+++...+......                 +.+++++|||++|+++.
T Consensus       172 ~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~  227 (741)
T 2ecf_A          172 RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR  227 (741)
T ss_dssp             TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred             CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence            4799999988887766433221                 47799999999888874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.59  E-value=2.5e-05  Score=74.91  Aligned_cols=190  Identities=14%  Similarity=0.102  Sum_probs=118.6

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE-EEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L-~V~  148 (391)
                      ...+++++++|+.+.+++.|+.|..|+......+...                    ....+...++++++ +++. +.+
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~--------------------~~h~~~V~~v~~~p-~~~~l~s~  210 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM--------------------HGHDHNVSSVSIMP-NGDHIVSA  210 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC--------------------CCCSSCEEEEEECS-SSSEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE--------------------cCCCCCEEEEEEeC-CCCEEEEE
Confidence            4467899999998999999999999987632222211                    11134467889998 5554 444


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ....-|..+|..++.........    ....+.++..++|++.++.+.                 ++.+..||..+++..
T Consensus       211 s~D~~i~~wd~~~~~~~~~~~~h----~~~v~~~~~~~~g~~l~s~s~-----------------D~~v~vwd~~~~~~~  269 (410)
T 1vyh_C          211 SRDKTIKMWEVQTGYCVKTFTGH----REWVRMVRPNQDGTLIASCSN-----------------DQTVRVWVVATKECK  269 (410)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEE
T ss_pred             eCCCeEEEEECCCCcEEEEEeCC----CccEEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCcee
Confidence            44444888898877533221111    124677888999988877643                 578888998877655


Q ss_pred             Eec-cCCCCcceEEEccC--------------------CCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEe
Q 016318          229 VLL-RNLQFPNGLSLSKD--------------------KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  287 (391)
Q Consensus       229 ~~~-~~~~~~ngia~~~d--------------------~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~  287 (391)
                      ... ......+.++++|+                    +.++ ++-+..+.|..+++...  .....+....+...++++
T Consensus       270 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~sgs~D~~i~iwd~~~~--~~~~~~~~h~~~v~~v~~  346 (410)
T 1vyh_C          270 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL-LSGSRDKTIKMWDVSTG--MCLMTLVGHDNWVRGVLF  346 (410)
T ss_dssp             EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE-EEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEE
T ss_pred             eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEE-EEEeCCCeEEEEECCCC--ceEEEEECCCCcEEEEEE
Confidence            433 33345567888886                    5544 44456678888876532  111222222234467889


Q ss_pred             CCCCCEEEEEcCCCchh
Q 016318          288 NEKGEFWVAIHCRRSLY  304 (391)
Q Consensus       288 d~~G~lwva~~~~~~~~  304 (391)
                      +++|.+.++......+.
T Consensus       347 ~~~g~~l~s~s~D~~i~  363 (410)
T 1vyh_C          347 HSGGKFILSCADDKTLR  363 (410)
T ss_dssp             CSSSSCEEEEETTTEEE
T ss_pred             cCCCCEEEEEeCCCeEE
Confidence            99998666655544433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.59  E-value=2.4e-05  Score=75.10  Aligned_cols=154  Identities=12%  Similarity=0.092  Sum_probs=100.9

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE-E
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI-A  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V-~  148 (391)
                      ...++++.++++.+.+++.||.|..|+..........                    ....+...+++|++ ++++++ +
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l--------------------~~h~~~V~~v~~~~-~~~~l~sg  168 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL--------------------KGHTDSVQDISFDH-SGKLLASC  168 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE--------------------CCCSSCEEEEEECT-TSSEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE--------------------eccCCcEEEEEEcC-CCCEEEEE
Confidence            4558899999999999999999999987621111111                    11134467899998 566554 4


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ....-|..+|..+++........    ......+++.++|+..++.+.                 ++.+..||..+++..
T Consensus       169 s~D~~i~iwd~~~~~~~~~~~~h----~~~V~~v~~~p~~~~l~s~s~-----------------D~~i~~wd~~~~~~~  227 (410)
T 1vyh_C          169 SADMTIKLWDFQGFECIRTMHGH----DHNVSSVSIMPNGDHIVSASR-----------------DKTIKMWEVQTGYCV  227 (410)
T ss_dssp             ETTSCCCEEETTSSCEEECCCCC----SSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEE
T ss_pred             eCCCeEEEEeCCCCceeEEEcCC----CCCEEEEEEeCCCCEEEEEeC-----------------CCeEEEEECCCCcEE
Confidence            44444888888776533221111    134678899999987777643                 578999999887654


Q ss_pred             E-eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          229 V-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       229 ~-~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      . +.......+.+++++|++.+..+ ...+.|..+++..
T Consensus       228 ~~~~~h~~~v~~~~~~~~g~~l~s~-s~D~~v~vwd~~~  265 (410)
T 1vyh_C          228 KTFTGHREWVRMVRPNQDGTLIASC-SNDQTVRVWVVAT  265 (410)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTT
T ss_pred             EEEeCCCccEEEEEECCCCCEEEEE-cCCCeEEEEECCC
Confidence            3 33333456788999999955544 5566777777643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.58  E-value=8e-05  Score=70.43  Aligned_cols=198  Identities=11%  Similarity=0.046  Sum_probs=116.4

Q ss_pred             cCcceEEEccCCC-eeEEEecCCEEEEEeC----Ccee------EEEeecCCCcccCCCCCCccccccccCccCccceEE
Q 016318           69 QGPESMAFDPLGR-GPYTGVADGRILFWDG----LKWT------DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (391)
Q Consensus        69 ~gPe~i~~d~~G~-~ly~~~~~g~I~~~~~----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~  137 (391)
                      ....+++++++|+ .++++..+|.|..|+.    ..-.      ........    ....      .......+....++
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~~v~~~~  115 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP----FALS------ASSGKTTNQVTCLA  115 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC----CCCC------------CBCEEEEE
T ss_pred             CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc----cccc------ccccCCCCceEEEE
Confidence            4567999999999 9999999999999977    4111      11111000    0000      00001133577899


Q ss_pred             EecCCCc-EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCce
Q 016318          138 FDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       138 ~d~~~g~-L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      +++ +++ |+++.....|..+|..+..+..+...     ...+..+++.++|+..++.+.                 +|.
T Consensus       116 ~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-----------------d~~  172 (425)
T 1r5m_A          116 WSH-DGNSIVTGVENGELRLWNKTGALLNVLNFH-----RAPIVSVKWNKDGTHIISMDV-----------------ENV  172 (425)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEETTSCEEEEECCC-----CSCEEEEEECTTSSEEEEEET-----------------TCC
T ss_pred             EcC-CCCEEEEEeCCCeEEEEeCCCCeeeeccCC-----CccEEEEEECCCCCEEEEEec-----------------CCe
Confidence            998 555 55555445588888655444444211     135678899999976665432                 478


Q ss_pred             EEEEeCCCCeEEEeccCCC-C---------------cceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC
Q 016318          217 VLKYDPTTKQTTVLLRNLQ-F---------------PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG  280 (391)
Q Consensus       217 l~~~d~~~~~~~~~~~~~~-~---------------~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g  280 (391)
                      +..||..+++......... .               ...+++++++. ++++ ...+.|..+++...+  ....+....+
T Consensus       173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~i~~~d~~~~~--~~~~~~~~~~  248 (425)
T 1r5m_A          173 TILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIP-GPKGAIFVYQITEKT--PTGKLIGHHG  248 (425)
T ss_dssp             EEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEE-CGGGCEEEEETTCSS--CSEEECCCSS
T ss_pred             EEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEE-cCCCeEEEEEcCCCc--eeeeeccCCC
Confidence            8899988776544332221 2               67788998875 4444 567789999876421  1122222223


Q ss_pred             CCCceEeCCCCCEEEEEcCCCch
Q 016318          281 YPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       281 ~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      ....++++++|+++++......+
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~~i  271 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDGTL  271 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEE
Confidence            34568888888866655444443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.58  E-value=2.1e-05  Score=74.96  Aligned_cols=201  Identities=10%  Similarity=-0.051  Sum_probs=119.9

Q ss_pred             CcceEEEcc-CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE-E
Q 016318           70 GPESMAFDP-LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY-I  147 (391)
Q Consensus        70 gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~-V  147 (391)
                      ...++++++ +++.++++..||.|..|+...........     .+        ............++++++++.+++ .
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~-----~~--------~~~~~~h~~~v~~~~~~p~~~~~l~s  149 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-----EP--------VITLEGHTKRVGIVAWHPTAQNVLLS  149 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC-----SC--------SEEEECCSSCEEEEEECSSBTTEEEE
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC-----Cc--------eEEecCCCCeEEEEEECcCCCCEEEE
Confidence            456889999 89989999999999999865110000000     00        001111235577899998432454 4


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      +.....|..+|..+++....... .+ ....+..+++.++|+++++.+.                 +|.|..||..+++.
T Consensus       150 ~~~dg~i~iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          150 AGCDNVILVWDVGTGAAVLTLGP-DV-HPDTIYSVDWSRDGALICTSCR-----------------DKRVRVIEPRKGTV  210 (402)
T ss_dssp             EETTSCEEEEETTTTEEEEEECT-TT-CCSCEEEEEECTTSSCEEEEET-----------------TSEEEEEETTTTEE
T ss_pred             EcCCCEEEEEECCCCCccEEEec-CC-CCCceEEEEECCCCCEEEEEec-----------------CCcEEEEeCCCCce
Confidence            44445589999988764432210 11 1235678999999976666533                 57899999988876


Q ss_pred             EEec-cCC--CCcceEEEccCCCEEEEEe--CCCCeEEEEEeccccCccceeec-ccCCCCCceEeCCCCCEEE-EEcCC
Q 016318          228 TVLL-RNL--QFPNGLSLSKDKSFFVFCE--GSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWV-AIHCR  300 (391)
Q Consensus       228 ~~~~-~~~--~~~ngia~~~d~~~l~v~e--t~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~~d~~G~lwv-a~~~~  300 (391)
                      .... ...  ..+..+++++|++++.++.  ...+.|..+++...... ..... ...+....++++++|++++ +....
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d  289 (402)
T 2aq5_A          211 VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-LSLQELDTSSGVLLPFFDPDTNIVYLCGKGD  289 (402)
T ss_dssp             EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-SEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred             eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-ceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence            5443 222  2367899999998555542  45677888886543211 11111 1223456788899998654 43333


Q ss_pred             Cch
Q 016318          301 RSL  303 (391)
Q Consensus       301 ~~~  303 (391)
                      ..+
T Consensus       290 g~i  292 (402)
T 2aq5_A          290 SSI  292 (402)
T ss_dssp             SCE
T ss_pred             CeE
Confidence            333

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.56  E-value=4.9e-05  Score=70.81  Aligned_cols=195  Identities=13%  Similarity=0.079  Sum_probs=117.6

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-CCc-
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGD-  144 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-~g~-  144 (391)
                      ..-.+++++++|+.+.++..+|.|..|+..  .........                    ...+....+++.++ +++ 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------------------~h~~~v~~~~~~~~~~~~~   71 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT--------------------GHEGPVWRVDWAHPKFGTI   71 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC--------------------CCSSCEEEEEECCGGGCSE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec--------------------CCCCcEEEEEeCCCCCCCE
Confidence            355688999999989999999999888754  222222111                    11344568888752 145 


Q ss_pred             EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCC--CCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~--G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      |+.+.....|..+|..+++.........  ....+..+++.++  |++.++.+.                 ++.+..||.
T Consensus        72 l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~-----------------d~~i~v~d~  132 (379)
T 3jrp_A           72 LASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASS-----------------DGKVSVVEF  132 (379)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEEC
T ss_pred             EEEeccCCEEEEEEcCCCceeEeeeecC--CCcceEEEEeCCCCCCCEEEEecC-----------------CCcEEEEec
Confidence            4555544558888888775433322111  1235678889888  877666533                 578888988


Q ss_pred             CCCe---EEEeccCCCCcceEEEcc-------------CCCEEEEEeCCCCeEEEEEeccccCccceeeccc---CCCCC
Q 016318          223 TTKQ---TTVLLRNLQFPNGLSLSK-------------DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL---PGYPD  283 (391)
Q Consensus       223 ~~~~---~~~~~~~~~~~ngia~~~-------------d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~---~g~p~  283 (391)
                      .++.   ...+.......+.++++|             |++.++.+ ...+.|..+++..... .......+   .+...
T Consensus       133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~-~~~~~~~~~~h~~~v~  210 (379)
T 3jrp_A          133 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVR  210 (379)
T ss_dssp             CTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE-ETTSCEEEEEEETTTT-EEEEEEEECCCSSCEE
T ss_pred             CCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE-eCCCeEEEEEecCCCc-ceeeEEEEecccCcEe
Confidence            7662   222323334567889998             68866555 5567888888764321 11111122   23345


Q ss_pred             ceEeCCC---CCEEEEEcCCCchh
Q 016318          284 NVRTNEK---GEFWVAIHCRRSLY  304 (391)
Q Consensus       284 ~i~~d~~---G~lwva~~~~~~~~  304 (391)
                      .++++++   |++.++......+.
T Consensus       211 ~~~~sp~~~~~~~l~s~~~dg~i~  234 (379)
T 3jrp_A          211 DVAWSPTVLLRSYLASVSQDRTCI  234 (379)
T ss_dssp             EEEECCCCSSSEEEEEEETTSCEE
T ss_pred             EEEECCCCCCCCeEEEEeCCCEEE
Confidence            7888998   77666655544443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.56  E-value=5e-06  Score=76.77  Aligned_cols=189  Identities=11%  Similarity=-0.026  Sum_probs=115.4

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC--c-eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc--
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD--  144 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~--  144 (391)
                      ...++++.++|+.++++..+|.|..|+..  . .......                    .........+++++ +++  
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~--------------------~~~~~~v~~~~~~~-~~~~~   71 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS--------------------LRYKHPLLCCNFID-NTDLQ   71 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE--------------------EECSSCEEEEEEEE-SSSEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee--------------------eecCCceEEEEECC-CCCcE
Confidence            45688999999989999999999888754  2 0111100                    01134567899998 555  


Q ss_pred             EEEEECCCCeEEEeC-CCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 LYIADAYFGLMKVGP-EGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L~V~d~~~gl~~~d~-~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      |+++.....|..+|. .+++...+...   ........+++.+ +++.++.+.                 ++.+..||..
T Consensus        72 l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~v~~l~~~~-~~~l~s~~~-----------------d~~i~iwd~~  130 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSPSFQALTNN---EANLGICRICKYG-DDKLIAASW-----------------DGLIEVIDPR  130 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEEECBSC---CCCSCEEEEEEET-TTEEEEEET-----------------TSEEEEECHH
T ss_pred             EEEEcCCCeEEEEEeccCCceEecccc---CCCCceEEEEeCC-CCEEEEEcC-----------------CCeEEEEccc
Confidence            666665556999999 88876554321   0113467888888 776666533                 4678888865


Q ss_pred             C---------CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc-ccCccceeecccCCCCCceEeCC-CCC
Q 016318          224 T---------KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG-EKAGNLEAFAILPGYPDNVRTNE-KGE  292 (391)
Q Consensus       224 ~---------~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g-~~~g~~~~~~~~~g~p~~i~~d~-~G~  292 (391)
                      +         ++.............+++++++  ++++ +..+.|..+++.. ...............+..+++++ +|+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  207 (342)
T 1yfq_A          131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE  207 (342)
T ss_dssp             HHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEE-ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC
T ss_pred             ccccccccccCCeeeEEeeCCceEEEEecCCc--EEEE-eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC
Confidence            4         3221111222356788898877  5555 5567899998765 22111111112334456788888 888


Q ss_pred             EEEEEcCCCch
Q 016318          293 FWVAIHCRRSL  303 (391)
Q Consensus       293 lwva~~~~~~~  303 (391)
                      ++++......+
T Consensus       208 ~l~~~~~dg~i  218 (342)
T 1yfq_A          208 GYACSSIDGRV  218 (342)
T ss_dssp             EEEEEETTSEE
T ss_pred             EEEEEecCCcE
Confidence            66655544443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.56  E-value=1.4e-05  Score=76.13  Aligned_cols=191  Identities=12%  Similarity=0.066  Sum_probs=120.8

Q ss_pred             cCcceEEEccCC-CeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           69 QGPESMAFDPLG-RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G-~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ....++++.++| +.++++..||.|..|+...........                  .....+....+++++++..|++
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~~l~~  193 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG------------------PDVHPDTIYSVDWSRDGALICT  193 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC------------------TTTCCSCEEEEEECTTSSCEEE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe------------------cCCCCCceEEEEECCCCCEEEE
Confidence            356678999998 688999999999999876322222110                  0111345678999984444566


Q ss_pred             EECCCCeEEEeCCCCeeEEce-eccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          148 ADAYFGLMKVGPEGGLATSLA-TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~-~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      +.....|..+|..+++..... ....   ...+..+++.++|+++++..+              ...++.+..||..+++
T Consensus       194 ~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~--------------~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTVVAEKDRPHE---GTRPVHAVFVSEGKILTTGFS--------------RMSERQVALWDTKHLE  256 (402)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSC---SSSCCEEEECSTTEEEEEEEC--------------TTCCEEEEEEETTBCS
T ss_pred             EecCCcEEEEeCCCCceeeeeccCCC---CCcceEEEEcCCCcEEEEecc--------------CCCCceEEEEcCcccc
Confidence            655555999999887644322 1211   124677889999987776511              0125789999987754


Q ss_pred             E--EE-eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc--CCCCCceEeCCCCCEEE
Q 016318          227 T--TV-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PGYPDNVRTNEKGEFWV  295 (391)
Q Consensus       227 ~--~~-~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~--~g~p~~i~~d~~G~lwv  295 (391)
                      .  .. ..........++++||++.++++....+.|..+++...+. ....+...  .+...++++.++|.+.+
T Consensus       257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-~~~~l~~~~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-FLHYLSMFSSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT-CEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred             CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc-ceEeecccccCCcccceEEecccccce
Confidence            2  12 1233345678999999998888876678888888765321 02222222  24567788888876544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.55  E-value=5.9e-05  Score=71.84  Aligned_cols=182  Identities=10%  Similarity=-0.012  Sum_probs=117.4

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      ...++++.++|+.++++..+|.|..|+...........                    ...+....+.++  +..|+.+.
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~~v~~~~~~--~~~l~~~~  193 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--------------------GHQARVGCLSWN--RHVLSSGS  193 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------------------CCSSCEEEEEEE--TTEEEEEE
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--------------------CCCCceEEEEEC--CCEEEEEc
Confidence            34678999999989999999999999876222222111                    113445677775  35666666


Q ss_pred             CCCCeEEEeCCCCe--eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          150 AYFGLMKVGPEGGL--ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       150 ~~~gl~~~d~~~g~--~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ....|..+|.....  ...+. ..    ...+..+++.++|++.++.+.                 +|.|..||..+++.
T Consensus       194 ~dg~i~i~d~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~l~s~~~-----------------d~~v~iwd~~~~~~  251 (401)
T 4aez_A          194 RSGAIHHHDVRIANHQIGTLQ-GH----SSEVCGLAWRSDGLQLASGGN-----------------DNVVQIWDARSSIP  251 (401)
T ss_dssp             TTSEEEEEETTSSSCEEEEEE-CC----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTCSSE
T ss_pred             CCCCEEEEecccCcceeeEEc-CC----CCCeeEEEEcCCCCEEEEEeC-----------------CCeEEEccCCCCCc
Confidence            55558888887332  22221 11    135678899999987777543                 57899999987765


Q ss_pred             EEec-cCCCCcceEEEccCCCEEEEEeC--CCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEc
Q 016318          228 TVLL-RNLQFPNGLSLSKDKSFFVFCEG--SVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       228 ~~~~-~~~~~~ngia~~~d~~~l~v~et--~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~  298 (391)
                      .... ........++++|++..++++..  ..+.|..+++...+  ....+ ...+....++++++|.+.++..
T Consensus       252 ~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          252 KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA--RVNTV-DAGSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC--EEEEE-ECSSCEEEEEECSSSSEEEEEE
T ss_pred             cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC--EEEEE-eCCCcEEEEEECCCCCeEEEEe
Confidence            4433 33456689999998876777643  56788888865321  11122 2233456788999998776643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.55  E-value=1.6e-06  Score=81.64  Aligned_cols=196  Identities=8%  Similarity=-0.073  Sum_probs=110.1

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCc--eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      .-.+++++++|+.+.++..++.|..|+...  +....                    ......+...++++++++..|..
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~--------------------~~~~h~~~v~~~~~s~~~~~l~s   72 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR--------------------TFSDHDKIVTCVDWAPKSNRIVT   72 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC--------------------CBCCCSSCEEEEEECTTTCCEEE
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE--------------------EEecCCceEEEEEEeCCCCEEEE
Confidence            345889999999888888999888886541  12111                    11112345678999984344555


Q ss_pred             EECCCCeEEEeCCCCe-eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          148 ADAYFGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~-~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      +.....|..+|..+++ .+..... .+ .......+++.++|++.++.+.                 ++.+..||.++++
T Consensus        73 ~s~d~~v~vwd~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~  133 (377)
T 3dwl_C           73 CSQDRNAYVYEKRPDGTWKQTLVL-LR-LNRAATFVRWSPNEDKFAVGSG-----------------ARVISVCYFEQEN  133 (377)
T ss_dssp             EETTSSEEEC------CCCCEEEC-CC-CSSCEEEEECCTTSSCCEEEES-----------------SSCEEECCC----
T ss_pred             EeCCCeEEEEEcCCCCceeeeeEe-cc-cCCceEEEEECCCCCEEEEEec-----------------CCeEEEEEECCcc
Confidence            5555558888887765 1111111 11 1234678888998876665432                 4678888887765


Q ss_pred             ----EEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC-------------ccceeec--ccCCCCCceE
Q 016318          227 ----TTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA-------------GNLEAFA--ILPGYPDNVR  286 (391)
Q Consensus       227 ----~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~-------------g~~~~~~--~~~g~p~~i~  286 (391)
                          ...+.. .-...+.++++|+++.++.+ ...+.|..+++.....             ...+...  ...+....++
T Consensus       134 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  212 (377)
T 3dwl_C          134 DWWVSKHLKRPLRSTILSLDWHPNNVLLAAG-CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVG  212 (377)
T ss_dssp             -CCCCEEECSSCCSCEEEEEECTTSSEEEEE-ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEE
T ss_pred             cceeeeEeecccCCCeEEEEEcCCCCEEEEE-eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEE
Confidence                344443 34467789999999966655 4566788887642110             0011111  1122345688


Q ss_pred             eCCCCCEEEEEcCCCchhh
Q 016318          287 TNEKGEFWVAIHCRRSLYS  305 (391)
Q Consensus       287 ~d~~G~lwva~~~~~~~~~  305 (391)
                      ++++|+++++......+.+
T Consensus       213 ~sp~~~~l~~~~~d~~i~i  231 (377)
T 3dwl_C          213 FSPSGNALAYAGHDSSVTI  231 (377)
T ss_dssp             ECTTSSCEEEEETTTEEC-
T ss_pred             ECCCCCEEEEEeCCCcEEE
Confidence            9999986665555444443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.55  E-value=0.00016  Score=66.58  Aligned_cols=197  Identities=10%  Similarity=0.018  Sum_probs=118.0

Q ss_pred             ccccCcceEEEccCC-CeeEEEecCCEEEEEeCC----ce-eEEEeecCCCcccCCCCCCccccccccCccCccceEEEe
Q 016318           66 NQIQGPESMAFDPLG-RGPYTGVADGRILFWDGL----KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G-~~ly~~~~~g~I~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d  139 (391)
                      |--..-.++++.+++ +.+.+++.|+.|..|+..    .. ..+...                    .........++++
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~--------------------~~h~~~v~~~~~s   74 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF--------------------KGHSHIVQDCTLT   74 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE--------------------ECCSSCEEEEEEC
T ss_pred             cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE--------------------eCCcccEEEEEEC
Confidence            333345678888754 788999999999988653    11 111111                    1112445678898


Q ss_pred             cCCCcEEE-EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEE
Q 016318          140 KKTGDLYI-ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVL  218 (391)
Q Consensus       140 ~~~g~L~V-~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~  218 (391)
                      + ++++++ +.....|..+|..+++........    ......+++++++.+.++.+.                 ++.+.
T Consensus        75 ~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~-----------------D~~i~  132 (319)
T 3frx_A           75 A-DGAYALSASWDKTLRLWDVATGETYQRFVGH----KSDVMSVDIDKKASMIISGSR-----------------DKTIK  132 (319)
T ss_dssp             T-TSSEEEEEETTSEEEEEETTTTEEEEEEECC----SSCEEEEEECTTSCEEEEEET-----------------TSCEE
T ss_pred             C-CCCEEEEEeCCCEEEEEECCCCCeeEEEccC----CCcEEEEEEcCCCCEEEEEeC-----------------CCeEE
Confidence            8 566544 444445888899887643322211    124678899999988777643                 57788


Q ss_pred             EEeCCCCeEEEeccCCCCcceEEEccCCC-----EEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCE
Q 016318          219 KYDPTTKQTTVLLRNLQFPNGLSLSKDKS-----FFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEF  293 (391)
Q Consensus       219 ~~d~~~~~~~~~~~~~~~~ngia~~~d~~-----~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~l  293 (391)
                      .||.+++....+.........+++.|.+.     ..+++-...+.|..+++...+  ....+....+....++++++|++
T Consensus       133 vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~sp~g~~  210 (319)
T 3frx_A          133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIGHNSNINTLTASPDGTL  210 (319)
T ss_dssp             EEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEECCCCSCEEEEEECTTSSE
T ss_pred             EEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeecCCCCcEEEEEEcCCCCE
Confidence            89987766666654444566778777432     134444556778877764311  11112222233456888999997


Q ss_pred             EEEEcCCCchhhh
Q 016318          294 WVAIHCRRSLYSH  306 (391)
Q Consensus       294 wva~~~~~~~~~~  306 (391)
                      .++......+.++
T Consensus       211 l~s~~~dg~i~iw  223 (319)
T 3frx_A          211 IASAGKDGEIMLW  223 (319)
T ss_dssp             EEEEETTCEEEEE
T ss_pred             EEEEeCCCeEEEE
Confidence            7766555555443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.54  E-value=1.4e-05  Score=75.73  Aligned_cols=204  Identities=9%  Similarity=0.025  Sum_probs=120.5

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ....++++.++|+.++++..+|.|..|+...................     ...............+.+.+ ++.++++
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~  223 (425)
T 1r5m_A          150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS-----INAENHSGDGSLGVDVEWVD-DDKFVIP  223 (425)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------CCCBSCCEEEE-TTEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc-----eeeccccCCcceeeEEEEcC-CCEEEEE
Confidence            34568899999998999999999999987622222211110000000     00000001112266788887 6777777


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      .....|..+|..+++........    ......+++.++|+++++.+.                 +|.+..||..+++..
T Consensus       224 ~~~g~i~~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~  282 (425)
T 1r5m_A          224 GPKGAIFVYQITEKTPTGKLIGH----HGPISVLEFNDTNKLLLSASD-----------------DGTLRIWHGGNGNSQ  282 (425)
T ss_dssp             CGGGCEEEEETTCSSCSEEECCC----SSCEEEEEEETTTTEEEEEET-----------------TSCEEEECSSSBSCS
T ss_pred             cCCCeEEEEEcCCCceeeeeccC----CCceEEEEECCCCCEEEEEcC-----------------CCEEEEEECCCCccc
Confidence            66566999998876433221111    134678899999986666533                 578999998776543


Q ss_pred             Eec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCch
Q 016318          229 VLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       229 ~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      ... ........++++|++ .++.+ ...+.|..+++...+  ....+....+....++++++|++.++......+
T Consensus       283 ~~~~~~~~~i~~~~~~~~~-~l~~~-~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  354 (425)
T 1r5m_A          283 NCFYGHSQSIVSASWVGDD-KVISC-SMDGSVRLWSLKQNT--LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQV  354 (425)
T ss_dssp             EEECCCSSCEEEEEEETTT-EEEEE-ETTSEEEEEETTTTE--EEEEEECTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eEecCCCccEEEEEECCCC-EEEEE-eCCCcEEEEECCCCc--EeEecccCCccEEEEEEcCCCCEEEEEECCCeE
Confidence            333 233456789999999 45544 567788888865321  111222222345678899999866665544443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.54  E-value=3.3e-06  Score=79.61  Aligned_cols=190  Identities=8%  Similarity=-0.027  Sum_probs=113.9

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      ..++++.++|+.+.++..++.|..|+...........                    ...+....+++.++++.++++..
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~--------------------~h~~~v~~v~~s~~~~~~~~s~~  201 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN--------------------AHSSEVNCVAACPGKDTIFLSCG  201 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEECTTCSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc--------------------CCCCCEEEEEEccCCCceeeeec
Confidence            4578999999989999999999999877322222111                    11244567888874444555444


Q ss_pred             C-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          151 Y-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       151 ~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      . ..|..+|..+++........  .....+..+++.+++ +++++.+.                 ++.|..||..+++..
T Consensus       202 ~dg~v~~wd~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~~la~g~~-----------------d~~i~~wd~~~~~~~  262 (357)
T 4g56_B          202 EDGRILLWDTRKPKPATRIDFC--ASDTIPTSVTWHPEKDDTFACGDE-----------------TGNVSLVNIKNPDSA  262 (357)
T ss_dssp             TTSCEEECCTTSSSCBCBCCCT--TCCSCEEEEEECTTSTTEEEEEES-----------------SSCEEEEESSCGGGC
T ss_pred             cCCceEEEECCCCceeeeeeec--cccccccchhhhhcccceEEEeec-----------------ccceeEEECCCCcEe
Confidence            4 44788888776433221111  112346778888864 56555422                 478889998776543


Q ss_pred             E-eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCC-CCCEEEEEcCCCc
Q 016318          229 V-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE-KGEFWVAIHCRRS  302 (391)
Q Consensus       229 ~-~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~  302 (391)
                      . +.......+.++++|++..++++-...+.|..+++..   ++........+....+++++ +|.++++......
T Consensus       263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~---~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~  335 (357)
T 4g56_B          263 QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF---SEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHK  335 (357)
T ss_dssp             EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS---CEEEEECCCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC---CcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCe
Confidence            3 3323345678999999854555545566787777543   22111111223456788886 7777766554433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.53  E-value=5.7e-05  Score=78.52  Aligned_cols=194  Identities=9%  Similarity=0.030  Sum_probs=120.9

Q ss_pred             ccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-
Q 016318           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-  144 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-  144 (391)
                      +.-....+++++|+|+.+.++..+|.|..|+...........                    ...+...++++++ +++ 
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~--------------------~~~~~v~~~~~s~-~~~~   69 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--------------------VTETPVRAGKFIA-RKNW   69 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------CCSSCEEEEEEEG-GGTE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe--------------------cCCCcEEEEEEeC-CCCE
Confidence            333466789999999999999999999999866222221111                    1134567899999 555 


Q ss_pred             EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      |.++.....|..+|..+++........    ...+..+++.++|...++.+.                 +|.+..||..+
T Consensus        70 l~~~~~dg~i~vw~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~-----------------dg~i~vw~~~~  128 (814)
T 3mkq_A           70 IIVGSDDFRIRVFNYNTGEKVVDFEAH----PDYIRSIAVHPTKPYVLSGSD-----------------DLTVKLWNWEN  128 (814)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSSEEEEEET-----------------TSEEEEEEGGG
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEecC----CCCEEEEEEeCCCCEEEEEcC-----------------CCEEEEEECCC
Confidence            555554445888998877543322211    134678899999976555432                 57888898876


Q ss_pred             C-eEEEe-ccCCCCcceEEEcc-CCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCC--CCCEEEEEc
Q 016318          225 K-QTTVL-LRNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNE--KGEFWVAIH  298 (391)
Q Consensus       225 ~-~~~~~-~~~~~~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~--~G~lwva~~  298 (391)
                      + ..... ...-.....++++| +++.++.+ +..+.|..+++.....  ...+.. ..+....++..+  +|.+.++..
T Consensus       129 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASG-CLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             TSEEEEEEECCSSCEEEEEEETTEEEEEEEE-ETTSEEEEEETTCSSC--SEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred             CceEEEEEcCCCCcEEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcc--eeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence            5 33333 33334567899999 77755554 5567888888754321  111211 223455677777  787666655


Q ss_pred             CCCchh
Q 016318          299 CRRSLY  304 (391)
Q Consensus       299 ~~~~~~  304 (391)
                      ..+.+.
T Consensus       206 ~dg~i~  211 (814)
T 3mkq_A          206 DDLTIK  211 (814)
T ss_dssp             TTSEEE
T ss_pred             CCCEEE
Confidence            544443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.53  E-value=0.00014  Score=67.03  Aligned_cols=182  Identities=11%  Similarity=0.074  Sum_probs=111.6

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE-E
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI-A  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V-~  148 (391)
                      .-.++++.++|+.+++++.|+.|..|+...-+.+....                    ...+....+++++ ++.+++ +
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--------------------~h~~~v~~~~~~~-~~~~l~s~  125 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------------------GHKSDVMSVDIDK-KASMIISG  125 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------CCSSCEEEEEECT-TSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc--------------------cCCCcEEEEEEcC-CCCEEEEE
Confidence            44578899999989999999999999876222222111                    1124467888988 565544 4


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC------CCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD------EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~------~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      ...+.|..+|.++..+..+...     ......+.+.+      ++...++.+                 .++.+..||.
T Consensus       126 s~D~~i~vwd~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~~wd~  183 (319)
T 3frx_A          126 SRDKTIKVWTIKGQCLATLLGH-----NDWVSQVRVVPNEKADDDSVTIISAG-----------------NDKMVKAWNL  183 (319)
T ss_dssp             ETTSCEEEEETTSCEEEEECCC-----SSCEEEEEECCC------CCEEEEEE-----------------TTSCEEEEET
T ss_pred             eCCCeEEEEECCCCeEEEEecc-----CCcEEEEEEccCCCCCCCccEEEEEe-----------------CCCEEEEEEC
Confidence            4445588888876655444221     12344555554      333444443                 2578889998


Q ss_pred             CCCeEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEc
Q 016318          223 TTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       223 ~~~~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~  298 (391)
                      .+.+...... .-...+.++++||++++..+ ...+.|..+++...+  ....+ ........++++++|.+.++..
T Consensus       184 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          184 NQFQIEADFIGHNSNINTLTASPDGTLIASA-GKDGEIMLWNLAAKK--AMYTL-SAQDEVFSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             TTTEEEEEECCCCSCEEEEEECTTSSEEEEE-ETTCEEEEEETTTTE--EEEEE-ECCSCEEEEEECSSSSEEEEEE
T ss_pred             CcchhheeecCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCc--EEEEe-cCCCcEEEEEEcCCCCEEEEEc
Confidence            8776654332 33456789999999965544 556788888765421  11111 1223345688999998665543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.52  E-value=2.2e-06  Score=86.11  Aligned_cols=146  Identities=12%  Similarity=-0.046  Sum_probs=93.1

Q ss_pred             eEEEecCCCc-EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCC
Q 016318          135 GLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       135 gi~~d~~~g~-L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      ..+++++++. +|++....++..+|.++++.+.+....       ..++++++||+..++.+..             ...
T Consensus       114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-------~~~~~~spDG~~la~~~~~-------------~~~  173 (582)
T 3o4h_A          114 ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-------GFGFVSDIRGDLIAGLGFF-------------GGG  173 (582)
T ss_dssp             EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-------SCEEEEEEETTEEEEEEEE-------------ETT
T ss_pred             eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-------CceEEECCCCCEEEEEEEc-------------CCC
Confidence            3455553334 566555566778888888877665321       1778899999866643210             111


Q ss_pred             CceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC-CeEEEEEeccccCccceeecccCCCCCceE------
Q 016318          214 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFAILPGYPDNVR------  286 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~-~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~------  286 (391)
                      ...|+.+|.++++.+.+.......+.++++|||+.|+.++..+ .+|+++++++.   +...+....+.+.+++      
T Consensus       174 ~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~  250 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVEDLELPSKDFSSYRPTAITW  250 (582)
T ss_dssp             EEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEEECCCSCSHHHHHCCSEEEE
T ss_pred             CeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEEEccCCCcChhhhhhccccc
Confidence            2569999999998888765555568899999999888665433 27999987653   2232222222234455      


Q ss_pred             --eCCCCCEEEEEcCCCch
Q 016318          287 --TNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       287 --~d~~G~lwva~~~~~~~  303 (391)
                        .+++|.++++.......
T Consensus       251 ~~~spdg~~~~~~~~~g~~  269 (582)
T 3o4h_A          251 LGYLPDGRLAVVARREGRS  269 (582)
T ss_dssp             EEECTTSCEEEEEEETTEE
T ss_pred             eeEcCCCcEEEEEEcCCcE
Confidence              89999877766544433

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.50  E-value=2e-05  Score=74.34  Aligned_cols=199  Identities=15%  Similarity=0.100  Sum_probs=113.3

Q ss_pred             EEEccCCCeeEEEec-CC--EEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           74 MAFDPLGRGPYTGVA-DG--RILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        74 i~~d~~G~~ly~~~~-~g--~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      .++.|||+.+++... +|  .|+.++.+.-...... ..                   ......+.++++++..|+++..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~-------------------~~~~~~~~~~spdg~~l~~~~~  100 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EG-------------------RGDNTFGGFLSPDDDALFYVKD  100 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CS-------------------SCBCSSSCEECTTSSEEEEEET
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eC-------------------CCCCccceEEcCCCCEEEEEeC
Confidence            468899996666655 55  5888887622211111 00                   0111225578885556777766


Q ss_pred             CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCc--cc-ch--hheeeecccCCCceEEEEeCCCC
Q 016318          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTN--YQ-RR--NFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~--~~-~~--~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      ...|+.+|.++++.+.+.....+.  ........+++|...++.....  +. ..  ..+...........|+.+|.+++
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAEW--VGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTE--EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             CCeEEEEECCCCcceeeeechhhc--ccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence            667999999998776654322111  0011223477887766421100  00 00  00111223445578999999999


Q ss_pred             eEEEeccCCCCcceEEEcc-CCCEEEEEeCC-----CCeEEEEEeccccCccceeecccC-C-CCCceEeCCCCC-E-EE
Q 016318          226 QTTVLLRNLQFPNGLSLSK-DKSFFVFCEGS-----VGRLHKYWLIGEKAGNLEAFAILP-G-YPDNVRTNEKGE-F-WV  295 (391)
Q Consensus       226 ~~~~~~~~~~~~ngia~~~-d~~~l~v~et~-----~~~I~~~~~~g~~~g~~~~~~~~~-g-~p~~i~~d~~G~-l-wv  295 (391)
                      +.+.+.........++++| ||+.|.++...     ..+|+.++.++..   ...+.... + .....+.+++|+ + |+
T Consensus       179 ~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~  255 (388)
T 3pe7_A          179 ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCTHEFWVPDGSALVYV  255 (388)
T ss_dssp             CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred             ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccccceECCCCCEEEEE
Confidence            9888776555678899999 99877665443     3489999876632   22222211 1 122457888987 4 44


Q ss_pred             EE
Q 016318          296 AI  297 (391)
Q Consensus       296 a~  297 (391)
                      +.
T Consensus       256 ~~  257 (388)
T 3pe7_A          256 SY  257 (388)
T ss_dssp             EE
T ss_pred             ec
Confidence            43

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.50  E-value=5.2e-05  Score=75.81  Aligned_cols=197  Identities=12%  Similarity=0.011  Sum_probs=115.5

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCce----eEEEeecCCCcccCCCCCCccccccccCccCc-cceEEEec--CC
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKW----TDFAFTSNNRSELCNPKPIATSYLKNEHICGR-PLGLRFDK--KT  142 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-P~gi~~d~--~~  142 (391)
                      .+.+++++++|+.+.++. ++.|..|+.+..    .....                    .....+. ...+++++  ++
T Consensus        20 ~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~--------------------~~~h~~~~v~~~~~sp~~~~   78 (615)
T 1pgu_A           20 FTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ--------------------FTGHGSSVVTTVKFSPIKGS   78 (615)
T ss_dssp             CCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE--------------------ECTTTTSCEEEEEECSSTTC
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceE--------------------EecCCCceEEEEEECcCCCC
Confidence            567899999999676666 788888876521    11111                    1112344 67899998  65


Q ss_pred             CcEEEEECCCCeEEEeCCCC------eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCce
Q 016318          143 GDLYIADAYFGLMKVGPEGG------LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       143 g~L~V~d~~~gl~~~d~~~g------~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      ..|.++.....|..+|..++      ..+..... .+ .......+++.++|+..++....             ....+.
T Consensus        79 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~~-------------~~~~~~  143 (615)
T 1pgu_A           79 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QV-LAGPISDISWDFEGRRLCVVGEG-------------RDNFGV  143 (615)
T ss_dssp             CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-EC-CSSCEEEEEECTTSSEEEEEECC-------------SSCSEE
T ss_pred             CEEEEecCCCEEEEEeCCCCcccccccccccchh-hc-ccccEEEEEEeCCCCEEEEeccC-------------CCCccE
Confidence            55666665445777777544      22222111 11 12347889999999866665321             112367


Q ss_pred             EEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC---CCCceEeCCC-CC
Q 016318          217 VLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG---YPDNVRTNEK-GE  292 (391)
Q Consensus       217 l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g---~p~~i~~d~~-G~  292 (391)
                      ++.||. ......+.......+.++++|+++.++++-...+.|..+++...  .....+....+   ....++++++ |+
T Consensus       144 v~~~d~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (615)
T 1pgu_A          144 FISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF--KFSASDRTHHKQGSFVRDVEFSPDSGE  220 (615)
T ss_dssp             EEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB--EEEEEECSSSCTTCCEEEEEECSTTCC
T ss_pred             EEEEEC-CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc--ceeeeecccCCCCceEEEEEECCCCCC
Confidence            888883 33444444444567889999999854555566778888875431  11112222222   3456888998 88


Q ss_pred             EEEEEcCCCchhh
Q 016318          293 FWVAIHCRRSLYS  305 (391)
Q Consensus       293 lwva~~~~~~~~~  305 (391)
                      +.++......+..
T Consensus       221 ~l~~~~~dg~i~v  233 (615)
T 1pgu_A          221 FVITVGSDRKISC  233 (615)
T ss_dssp             EEEEEETTCCEEE
T ss_pred             EEEEEeCCCeEEE
Confidence            6665544444433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.49  E-value=6.6e-05  Score=70.45  Aligned_cols=196  Identities=12%  Similarity=0.010  Sum_probs=115.5

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      ...++++.++|+.+.++..++.+..++...-.     ...... .        ........+....+.+.+++..|+.+.
T Consensus       108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~-----~~~~~~-~--------~~~~~~h~~~v~~~~~~~~~~~l~t~s  173 (354)
T 2pbi_B          108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDK-----NENMAA-K--------KKSVAMHTNYLSACSFTNSDMQILTAS  173 (354)
T ss_dssp             CCCEEEECTTSSEEEEESTTSEEEEEECCCCT-----TCCSGG-G--------CEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEeeCCCCEEEEEEeccc-----cccccc-c--------ceeeeccCCcEEEEEEeCCCCEEEEEe
Confidence            45688999999999999999998888653100     000000 0        000111234456788888433456565


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC--CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD--EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~--~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ....|..+|..+++.........    .....+++.+  +|++.++.+.                 +|.+..||..+++.
T Consensus       174 ~D~~v~lwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~g~~l~sgs~-----------------Dg~v~~wd~~~~~~  232 (354)
T 2pbi_B          174 GDGTCALWDVESGQLLQSFHGHG----ADVLCLDLAPSETGNTFVSGGC-----------------DKKAMVWDMRSGQC  232 (354)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCS----SCEEEEEECCCSSCCEEEEEET-----------------TSCEEEEETTTCCE
T ss_pred             CCCcEEEEeCCCCeEEEEEcCCC----CCeEEEEEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCcE
Confidence            55558888988775432222111    1345566654  5676666533                 58899999988875


Q ss_pred             EEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc--CCCCCceEeCCCCCEEEEEcCCCch
Q 016318          228 TVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PGYPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       228 ~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~--~g~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      ..... .-...+.++++|+++.+..+ ...+.|..+++...+  ....+...  ......+.++++|.+.++......+
T Consensus       233 ~~~~~~h~~~v~~v~~~p~~~~l~s~-s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i  308 (354)
T 2pbi_B          233 VQAFETHESDVNSVRYYPSGDAFASG-SDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI  308 (354)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEecCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcE
Confidence            44433 33467899999999965544 556778888765421  12222211  1123467889999977665554443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.49  E-value=6.7e-05  Score=71.38  Aligned_cols=159  Identities=13%  Similarity=0.088  Sum_probs=103.0

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~V  147 (391)
                      ....++++.++|+.+++++.++.|..|+..........                    ....+...++++++ +++ |+.
T Consensus       140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--------------------~~h~~~v~~~~~~~-~~~~l~s  198 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL--------------------IGHRATVTDIAIID-RGRNVLS  198 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE--------------------ECCSSCEEEEEEET-TTTEEEE
T ss_pred             CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE--------------------cCCCCcEEEEEEcC-CCCEEEE
Confidence            45678999999999999999999999987621111111                    11134567899998 555 555


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCC--------------------cccCCcceeecCCCCEEEEeCCCcccchhheee
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGV--------------------PLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~--------------------~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~  207 (391)
                      +.....|..+|..+++...........                    .......++++++|++.++.+.           
T Consensus       199 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------  267 (420)
T 3vl1_A          199 ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-----------  267 (420)
T ss_dssp             EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-----------
T ss_pred             EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-----------
Confidence            554455889998877544322211000                    0134556777888876666533           


Q ss_pred             ecccCCCceEEEEeCCCCeEEEec-cC-CCCcceEEEccCCC-EEEEEeCCCCeEEEEEecc
Q 016318          208 VFSAEDTGRVLKYDPTTKQTTVLL-RN-LQFPNGLSLSKDKS-FFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~~~~-~~-~~~~ngia~~~d~~-~l~v~et~~~~I~~~~~~g  266 (391)
                            +|.+..||..+++..... .. ....+.++++|+++ .++.+ ...+.|..+++..
T Consensus       268 ------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g-~~dg~i~vwd~~~  322 (420)
T 3vl1_A          268 ------SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG-YENGMLAQWDLRS  322 (420)
T ss_dssp             ------TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE-ETTSEEEEEETTC
T ss_pred             ------CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE-eCCCeEEEEEcCC
Confidence                  578999998877644333 22 24567899999998 56555 5567898888764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.49  E-value=4.2e-05  Score=72.83  Aligned_cols=187  Identities=9%  Similarity=-0.052  Sum_probs=115.8

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EEEEE
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIAD  149 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~V~d  149 (391)
                      .++++  +++.++++..+|.|..|+.. .-......                    ....+...++++++ +++ |.++.
T Consensus       180 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------~~~~~~v~~~~~~~-~~~~l~s~~  236 (401)
T 4aez_A          180 GCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTL--------------------QGHSSEVCGLAWRS-DGLQLASGG  236 (401)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE--------------------ECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             EEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEE--------------------cCCCCCeeEEEEcC-CCCEEEEEe
Confidence            34455  45668888888888888765 21111111                    11135567899998 555 55555


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ..+.|..+|..+++........    ...+..+++.++| +++++.++               ..++.+..||..+++..
T Consensus       237 ~d~~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~p~~~~ll~~~~g---------------s~d~~i~i~d~~~~~~~  297 (401)
T 4aez_A          237 NDNVVQIWDARSSIPKFTKTNH----NAAVKAVAWCPWQSNLLATGGG---------------TMDKQIHFWNAATGARV  297 (401)
T ss_dssp             TTSCEEEEETTCSSEEEEECCC----SSCCCEEEECTTSTTEEEEECC---------------TTTCEEEEEETTTCCEE
T ss_pred             CCCeEEEccCCCCCccEEecCC----cceEEEEEECCCCCCEEEEecC---------------CCCCEEEEEECCCCCEE
Confidence            4556889998876543322111    2357889999976 56666532               12578999999888765


Q ss_pred             EeccCCCCcceEEEccCCCEEEEEe-CCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318          229 VLLRNLQFPNGLSLSKDKSFFVFCE-GSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       229 ~~~~~~~~~ngia~~~d~~~l~v~e-t~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      .........+.++++++++.++++. ...+.|..+++..........+....+....++++++|.+.++....
T Consensus       298 ~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d  370 (401)
T 4aez_A          298 NTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD  370 (401)
T ss_dssp             EEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTT
T ss_pred             EEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCC
Confidence            5554445678999999999777653 35678888886542111111111223456678999999866665544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.48  E-value=1.7e-05  Score=73.98  Aligned_cols=188  Identities=9%  Similarity=-0.045  Sum_probs=113.6

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ...++++.++|+.++++..+|.|..|+..  ........                    ......+..+++++++..|++
T Consensus        54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------------------~~~~~~v~~~~~~~~~~~l~~  113 (372)
T 1k8k_C           54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI--------------------LRINRAARCVRWAPNEKKFAV  113 (372)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC--------------------CCCSSCEEEEEECTTSSEEEE
T ss_pred             cccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEe--------------------ecCCCceeEEEECCCCCEEEE
Confidence            45688999999989999999999988764  21111110                    111345678999984444566


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC----
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT----  223 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~----  223 (391)
                      +.....+..+|.+++................+..+++.++|+++++.+.                 +|.+..||..    
T Consensus       114 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~  176 (372)
T 1k8k_C          114 GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIKEV  176 (372)
T ss_dssp             EETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCTTT
T ss_pred             EeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC-----------------CCCEEEEEcccccc
Confidence            6554557776666554111111111111235778899999987776533                 4778888842    


Q ss_pred             --------------CCeE-EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318          224 --------------TKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  288 (391)
Q Consensus       224 --------------~~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d  288 (391)
                                    +++. ..+.......+.++++|+++.++.+ ...+.|..+++...+  ....+....+....++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~  253 (372)
T 1k8k_C          177 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV-SHDSTVCLADADKKM--AVATLASETLPLLAVTFI  253 (372)
T ss_dssp             SCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE-ETTTEEEEEEGGGTT--EEEEEECSSCCEEEEEEE
T ss_pred             cccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE-eCCCEEEEEECCCCc--eeEEEccCCCCeEEEEEe
Confidence                          3333 3333333457789999999966666 556788888875421  122222222234668888


Q ss_pred             CCCCEEEEE
Q 016318          289 EKGEFWVAI  297 (391)
Q Consensus       289 ~~G~lwva~  297 (391)
                      ++|.+.++.
T Consensus       254 ~~~~~l~~~  262 (372)
T 1k8k_C          254 TESSLVAAG  262 (372)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCCEEEEE
Confidence            888866655

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.48  E-value=5.5e-05  Score=77.59  Aligned_cols=202  Identities=13%  Similarity=0.002  Sum_probs=111.0

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ..+.++++++|+. +.++ .++.|+.++...-.......                     ..+.+..+++++ +|+.++.
T Consensus        82 ~~v~~~~~spd~~-~~~~-~~~~i~~~d~~~~~~~~l~~---------------------~~~~~~~~~~Sp-dG~~la~  137 (706)
T 2z3z_A           82 FPSFRTLDAGRGL-VVLF-TQGGLVGFDMLARKVTYLFD---------------------TNEETASLDFSP-VGDRVAY  137 (706)
T ss_dssp             CCCEEEEETTTTE-EEEE-ETTEEEEEETTTTEEEEEEC---------------------CTTCCTTCEECT-TSSEEEE
T ss_pred             cCceeEEECCCCe-EEEE-ECCEEEEEECCCCceEEccC---------------------CcccccCCcCCC-CCCEEEE
Confidence            4678999999954 4443 46899999876211111110                     013345678888 5553333


Q ss_pred             ECCCCeEEEeCCC-----CeeEEceeccCC----------CcccCCcceeecCCCC-EEEEeC--CCc--ccch------
Q 016318          149 DAYFGLMKVGPEG-----GLATSLATEAEG----------VPLRFTNDLDIDDEGN-VYFTDS--STN--YQRR------  202 (391)
Q Consensus       149 d~~~gl~~~d~~~-----g~~~~~~~~~~~----------~~~~~~~~l~~d~~G~-ly~td~--~~~--~~~~------  202 (391)
                      .....|+.++..+     ++...+......          .....+.+++.++||+ |+++..  +..  +...      
T Consensus       138 ~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~  217 (706)
T 2z3z_A          138 VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE  217 (706)
T ss_dssp             EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred             EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC
Confidence            3345699999887     766554322111          0112357899999996 444431  000  0000      


Q ss_pred             ----hheee-ecccCCCceEEEEeCCCCeEEEeccC---CCCcceEEEccCCCEEEEEeCCC----CeEEEEEeccccCc
Q 016318          203 ----NFMQL-VFSAEDTGRVLKYDPTTKQTTVLLRN---LQFPNGLSLSKDKSFFVFCEGSV----GRLHKYWLIGEKAG  270 (391)
Q Consensus       203 ----~~~~~-~~~~~~~g~l~~~d~~~~~~~~~~~~---~~~~ngia~~~d~~~l~v~et~~----~~I~~~~~~g~~~g  270 (391)
                          ...+. .-+......|+.+|.++++...+...   -.....++++|||+.|+++....    ..|+.+++.+.+  
T Consensus       218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--  295 (706)
T 2z3z_A          218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--  295 (706)
T ss_dssp             CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--
T ss_pred             CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--
Confidence                00000 00112346799999999887665432   13456899999999888764332    378888765421  


Q ss_pred             cceeec-c-cCC---CCCceEeCC--CCCEEEE
Q 016318          271 NLEAFA-I-LPG---YPDNVRTNE--KGEFWVA  296 (391)
Q Consensus       271 ~~~~~~-~-~~g---~p~~i~~d~--~G~lwva  296 (391)
                      ....+. . ...   ....+++++  +|++.++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~  328 (706)
T 2z3z_A          296 FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ  328 (706)
T ss_dssp             EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE
T ss_pred             eeeEEEEccCCCeECccCCceeecCCCCEEEEE
Confidence            222222 1 111   125678888  8984443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.48  E-value=6.7e-05  Score=70.78  Aligned_cols=244  Identities=14%  Similarity=0.048  Sum_probs=125.5

Q ss_pred             CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEE
Q 016318           79 LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKV  157 (391)
Q Consensus        79 ~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~  157 (391)
                      +| .+|+++.++.|+.++.. .-.........                  .....|   .++  ++.+|++....+|+.+
T Consensus       103 ~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~------------------~~~~~p---~~~--~~~v~v~~~~g~l~~~  158 (376)
T 3q7m_A          103 GG-HVYIGSEKAQVYALNTSDGTVAWQTKVAG------------------EALSRP---VVS--DGLVLIHTSNGQLQAL  158 (376)
T ss_dssp             TT-EEEEEETTSEEEEEETTTCCEEEEEECSS------------------CCCSCC---EEE--TTEEEEECTTSEEEEE
T ss_pred             CC-EEEEEcCCCEEEEEECCCCCEEEEEeCCC------------------ceEcCC---EEE--CCEEEEEcCCCeEEEE
Confidence            44 49999999999999976 21111111000                  001222   233  6789998766679999


Q ss_pred             eCCCCeeEEceeccCC-CcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCC
Q 016318          158 GPEGGLATSLATEAEG-VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQF  236 (391)
Q Consensus       158 d~~~g~~~~~~~~~~~-~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~  236 (391)
                      |+.+|+..-....... .........+++ +|.+|++..                  +|+|+.+|+++|+..--... ..
T Consensus       159 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~------------------~g~l~~~d~~tG~~~w~~~~-~~  218 (376)
T 3q7m_A          159 NEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGD------------------NGRVSAVLMEQGQMIWQQRI-SQ  218 (376)
T ss_dssp             ETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCT------------------TTEEEEEETTTCCEEEEEEC-CC
T ss_pred             ECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcC------------------CCEEEEEECCCCcEEEEEec-cc
Confidence            9988864422111110 001111223333 678888753                  37899999988876432211 11


Q ss_pred             c-------------ceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCch
Q 016318          237 P-------------NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       237 ~-------------ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      +             ....+  ++..+|++ +.++.++.++.+.   |+.......+ .+..+..+ ++++|++...+.-.
T Consensus       219 ~~~~~~~~~~~~~~~~p~~--~~~~v~~~-~~~g~l~~~d~~t---G~~~w~~~~~-~~~~~~~~-~~~l~~~~~~g~l~  290 (376)
T 3q7m_A          219 ATGSTEIDRLSDVDTTPVV--VNGVVFAL-AYNGNLTALDLRS---GQIMWKRELG-SVNDFIVD-GNRIYLVDQNDRVM  290 (376)
T ss_dssp             -----------CCCCCCEE--ETTEEEEE-CTTSCEEEEETTT---CCEEEEECCC-CEEEEEEE-TTEEEEEETTCCEE
T ss_pred             CCCCcccccccccCCCcEE--ECCEEEEE-ecCcEEEEEECCC---CcEEeeccCC-CCCCceEE-CCEEEEEcCCCeEE
Confidence            1             11122  23448877 4567899998642   2222111121 22334454 66788887643221


Q ss_pred             hhhhhhcCccceeeeeecCc-cce-------eeeEEeecCccceEEEEEC-CCCCEEEEEeCCCCCeeeceeEEEEECCE
Q 016318          304 YSHLMALYPKIRHFLLKLPI-SAK-------THYLIHVGGRLHAMAVKYS-PEGKILQVLEDSKGKVVKAISEVEEKDGK  374 (391)
Q Consensus       304 ~~~~l~~~~~~~~~~~~l~~-~~~-------~~~~~~~~~~~~~~v~~~d-~~g~~~~~~~~~~g~~~~~is~~~~~~g~  374 (391)
                           +-.+..++.+.+.+. ...       ....++++ ...+.+.++| .+|+.+..+....+..   .+.....+|+
T Consensus       291 -----~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~-~~~g~l~~~d~~tG~~~~~~~~~~~~~---~~~~~~~~~~  361 (376)
T 3q7m_A          291 -----ALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVG-DSEGYLHWINVEDGRFVAQQKVDSSGF---QTEPVAADGK  361 (376)
T ss_dssp             -----EEETTTCCEEEEECTTTTSCCCCCEEETTEEEEE-CTTSEEEEEETTTCCEEEEEECCTTCB---CSCCEEETTE
T ss_pred             -----EEECCCCcEEEeecccCCCcccCCEEECCEEEEE-eCCCeEEEEECCCCcEEEEEecCCCcc---eeCCEEECCE
Confidence                 113334555554431 110       00112222 2345677777 4677766655423222   2334456899


Q ss_pred             EEEecCCCC
Q 016318          375 LWMGSVLMP  383 (391)
Q Consensus       375 Lylgs~~~~  383 (391)
                      ||+++....
T Consensus       362 l~v~~~~G~  370 (376)
T 3q7m_A          362 LLIQAKDGT  370 (376)
T ss_dssp             EEEEBTTSC
T ss_pred             EEEEeCCCE
Confidence            999987654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.48  E-value=0.00014  Score=68.42  Aligned_cols=204  Identities=11%  Similarity=0.072  Sum_probs=117.3

Q ss_pred             cCcceEEEcc-CCCeeEEEecCCEEEEEeCCc---eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           69 QGPESMAFDP-LGRGPYTGVADGRILFWDGLK---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        69 ~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ..-.++++.+ +|+.++++..+|.|..|+...   ...+....     .+...     ........+....+++.+++++
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA-----VCSIG-----RDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE-----EEEEC-----TTCTTCCSSCEEEEEECTTCTT
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc-----ccccc-----ccccccCCCcEEEEEEccCCCc
Confidence            3556899999 999999999999999998761   11110000     00000     0000112355678999874444


Q ss_pred             -EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC---CCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          145 -LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD---EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       145 -L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~---~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                       |+.+.....|..+|..+++....... .    .....+...+   ++.+.++...                 +|.+..|
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~  171 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFNF-E----ETVYSHHMSPVSTKHCLVAVGTR-----------------GPKVQLC  171 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEEC-S----SCEEEEEECSSCSSCCEEEEEES-----------------SSSEEEE
T ss_pred             EEEEEeCCCeEEEeeCCCCccceeccC-C----CceeeeEeecCCCCCcEEEEEcC-----------------CCeEEEE
Confidence             45554444588899988765443321 1    1234555554   4445555432                 5789999


Q ss_pred             eCCCCeEEE-eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceee---------------cccCCCCCc
Q 016318          221 DPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF---------------AILPGYPDN  284 (391)
Q Consensus       221 d~~~~~~~~-~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~---------------~~~~g~p~~  284 (391)
                      |..+++... +.........++++|+++.++++....+.|..+++.... .....+               ....+....
T Consensus       172 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  250 (408)
T 4a11_B          172 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS-GCLITLDQHNGKKSQAVESANTAHNGKVNG  250 (408)
T ss_dssp             ESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS-CCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred             eCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC-cccccccccccccceeeccccccccCceeE
Confidence            988775433 333334567899999998655555667788888875321 011111               011123456


Q ss_pred             eEeCCCCCEEEEEcCCCchhh
Q 016318          285 VRTNEKGEFWVAIHCRRSLYS  305 (391)
Q Consensus       285 i~~d~~G~lwva~~~~~~~~~  305 (391)
                      ++++++|++.++......+..
T Consensus       251 ~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          251 LCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             EEECTTSSEEEEEETTSCEEE
T ss_pred             EEEcCCCCEEEEecCCCeEEE
Confidence            888999986666554444433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.48  E-value=9.9e-05  Score=67.44  Aligned_cols=194  Identities=13%  Similarity=0.022  Sum_probs=109.7

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC-c---eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-CC
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL-K---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TG  143 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-~g  143 (391)
                      ..-.+++++++|+.++++..+|.|..|+.. .   .......                    ....+....+++.+. ++
T Consensus        12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------------------~~~~~~v~~~~~~~~~d~   71 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW--------------------RAHDSSIVAIDWASPEYG   71 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE--------------------ECCSSCEEEEEECCGGGC
T ss_pred             cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee--------------------ccCCCcEEEEEEcCCCCC
Confidence            456689999999999999999999999765 1   1111111                    112345678888863 24


Q ss_pred             c-EEEEECCCCeEEEeCCCCee-------EEceeccCCCcccCCcceeecCC--CCEEEEeCCCcccchhheeeecccCC
Q 016318          144 D-LYIADAYFGLMKVGPEGGLA-------TSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       144 ~-L~V~d~~~gl~~~d~~~g~~-------~~~~~~~~~~~~~~~~~l~~d~~--G~ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      + |..+.....|..+|..+++.       +.+... .+ .......+++.++  +++.++.+.                 
T Consensus        72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~l~~~~~-----------------  132 (351)
T 3f3f_A           72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-ND-SKGSLYSVKFAPAHLGLKLACLGN-----------------  132 (351)
T ss_dssp             SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEEET-----------------
T ss_pred             CEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cc-cCCceeEEEEcCCCCCcEEEEecC-----------------
Confidence            4 44454444477888776531       111111 11 1235678889888  876666533                 


Q ss_pred             CceEEEEeCCCCeEEEe------c--------cCCCCcceEEEccC---CCEEEEEeCCCCeEEEEEeccccCccceeec
Q 016318          214 TGRVLKYDPTTKQTTVL------L--------RNLQFPNGLSLSKD---KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA  276 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~------~--------~~~~~~ngia~~~d---~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~  276 (391)
                      +|.|..||..+++....      .        ........++++|+   ++.+.++. ..+.+ .++...  .++.....
T Consensus       133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~-~~~~~~--~~~~~~~~  208 (351)
T 3f3f_A          133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAI-IYQRGK--DGKLHVAA  208 (351)
T ss_dssp             TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEE-EEEECT--TSCEEEEE
T ss_pred             CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec-CCCcE-EEEccC--CCceeeee
Confidence            57888898766542110      0        12234567889987   77666654 34444 443221  12222222


Q ss_pred             ccC---CCCCceEeCCCC----CEEEEEcCCCchhh
Q 016318          277 ILP---GYPDNVRTNEKG----EFWVAIHCRRSLYS  305 (391)
Q Consensus       277 ~~~---g~p~~i~~d~~G----~lwva~~~~~~~~~  305 (391)
                      .+.   +....++++++|    +++++......+..
T Consensus       209 ~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          209 KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            222   334567888887    55555544444433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.47  E-value=1.5e-05  Score=75.39  Aligned_cols=193  Identities=10%  Similarity=0.026  Sum_probs=117.1

Q ss_pred             cceEEEccCCCeeEEEe--cCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           71 PESMAFDPLGRGPYTGV--ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~--~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ...+++.|||+.+.+++  .|+.|..|+..........                    + ..+...+++|++ +|++++.
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--------------------~-~~~~V~~v~fsp-dg~~l~s  193 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--------------------E-TRGEVKDLHFST-DGKVVAY  193 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--------------------E-CSSCCCEEEECT-TSSEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--------------------C-CCCceEEEEEcc-CCceEEe
Confidence            34799999999776655  5788888888732222211                    1 124567899999 7787776


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ....++.+++..++.........  ......+.+++.++|...++.+..             ......+..++.......
T Consensus       194 ~s~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~fspdg~~l~~~s~d-------------~~~~~~i~~~~~~~~~~~  258 (365)
T 4h5i_A          194 ITGSSLEVISTVTGSCIARKTDF--DKNWSLSKINFIADDTVLIAASLK-------------KGKGIVLTKISIKSGNTS  258 (365)
T ss_dssp             ECSSCEEEEETTTCCEEEEECCC--CTTEEEEEEEEEETTEEEEEEEES-------------SSCCEEEEEEEEETTEEE
T ss_pred             ccceeEEEEEeccCcceeeeecC--CCCCCEEEEEEcCCCCEEEEEecC-------------CcceeEEeecccccceec
Confidence            66777888888776543221111  112346788999999877765320             011123556665544432


Q ss_pred             E-----eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          229 V-----LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       229 ~-----~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      .     +.......+.++++|||++|..+ +..+.|..+++...  .....+.. -.+....++++++|++.++......
T Consensus       259 ~~~~~~~~~~~~~V~~~~~Spdg~~lasg-s~D~~V~iwd~~~~--~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t  335 (365)
T 4h5i_A          259 VLRSKQVTNRFKGITSMDVDMKGELAVLA-SNDNSIALVKLKDL--SMSKIFKQAHSFAITEVTISPDSTYVASVSAANT  335 (365)
T ss_dssp             EEEEEEEESSCSCEEEEEECTTSCEEEEE-ETTSCEEEEETTTT--EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             ceeeeeecCCCCCeEeEEECCCCCceEEE-cCCCEEEEEECCCC--cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence            2     22333456789999999966555 55677888876431  11122211 1234567899999998877665544


Q ss_pred             h
Q 016318          303 L  303 (391)
Q Consensus       303 ~  303 (391)
                      +
T Consensus       336 v  336 (365)
T 4h5i_A          336 I  336 (365)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.47  E-value=4.3e-05  Score=70.88  Aligned_cols=193  Identities=8%  Similarity=-0.045  Sum_probs=112.5

Q ss_pred             CcceEEEccC----CCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-
Q 016318           70 GPESMAFDPL----GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-  144 (391)
Q Consensus        70 gPe~i~~d~~----G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-  144 (391)
                      ...++++.++    |+.++++..+|.|..|+...........                    ...+...++++++++++ 
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~~  130 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--------------------GHGNAINELKFHPRDPNL  130 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--------------------SCCSCEEEEEECSSCTTE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec--------------------CCCCcEEEEEECCCCCCE
Confidence            3567888888    6689999999999999876222221111                    11345678899873344 


Q ss_pred             EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      |+.+.....|..+|..+++.........+ ....+..++++++|+..++.+.                 +|.+..||..+
T Consensus       131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~  192 (366)
T 3k26_A          131 LLSVSKDHALRLWNIQTDTLVAIFGGVEG-HRDEVLSADYDLLGEKIMSCGM-----------------DHSLKLWRINS  192 (366)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECSTTS-CSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESCS
T ss_pred             EEEEeCCCeEEEEEeecCeEEEEeccccc-ccCceeEEEECCCCCEEEEecC-----------------CCCEEEEECCC
Confidence            55555455599999987764433211111 1235788899999987776533                 46788888776


Q ss_pred             CeEEEec-----------------------------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC------
Q 016318          225 KQTTVLL-----------------------------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA------  269 (391)
Q Consensus       225 ~~~~~~~-----------------------------~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~------  269 (391)
                      ++.....                             ......+.++++  ++.+ ++....+.|..+++.....      
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~  269 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI-LSKSCENAIVCWKPGKMEDDIDKIK  269 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE-EEECSSSEEEEEEESSTTCCGGGCC
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE-EEEecCCEEEEEeCCCccccccccc
Confidence            5422110                             022344567776  6644 4446678888888754311      


Q ss_pred             ---ccceeeccc---CCCCCceEeCCC--CCEEEEEcCCCch
Q 016318          270 ---GNLEAFAIL---PGYPDNVRTNEK--GEFWVAIHCRRSL  303 (391)
Q Consensus       270 ---g~~~~~~~~---~g~p~~i~~d~~--G~lwva~~~~~~~  303 (391)
                         ........+   .+....++++++  |++.++......+
T Consensus       270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i  311 (366)
T 3k26_A          270 PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL  311 (366)
T ss_dssp             TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCE
T ss_pred             cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcE
Confidence               000111111   223455666666  8876665554443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.47  E-value=1.7e-05  Score=81.77  Aligned_cols=203  Identities=10%  Similarity=0.057  Sum_probs=114.0

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EEEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIAD  149 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~V~d  149 (391)
                      ..++++++||+.++++.. +.|+.++...-.       .  ..+.         ......+.+..+++++ +|+ |..+.
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~-------~--~~~~---------~l~~~~~~~~~~~~SP-DG~~la~~~  170 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEG-------K--AAVR---------QLTHGEGFATDAKLSP-KGGFVSFIR  170 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCS-------T--TSCC---------BCCCSSSCEEEEEECT-TSSEEEEEE
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCC-------c--ceEE---------EcccCCcccccccCCC-CCCEEEEEe
Confidence            578899999997777665 889988765210       0  0000         1111134567889999 565 44443


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCC------------cccCCcceeecCCCC-EEEEeCCC-cccc-------------h
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGV------------PLRFTNDLDIDDEGN-VYFTDSST-NYQR-------------R  202 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~------------~~~~~~~l~~d~~G~-ly~td~~~-~~~~-------------~  202 (391)
                       ...|+.+|.++++...+.......            .+..+.+++.++||+ |+++.... ....             .
T Consensus       171 -~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~  249 (741)
T 2ecf_A          171 -GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI  249 (741)
T ss_dssp             -TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred             -CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence             456999999988776654321110            011257789999996 66653210 0000             0


Q ss_pred             hheee-ecccCCCceEEEEeCCC-CeEEEeccC---CCCcceEEEccCCCEEEEEeC----CCCeEEEEEeccccCccce
Q 016318          203 NFMQL-VFSAEDTGRVLKYDPTT-KQTTVLLRN---LQFPNGLSLSKDKSFFVFCEG----SVGRLHKYWLIGEKAGNLE  273 (391)
Q Consensus       203 ~~~~~-~~~~~~~g~l~~~d~~~-~~~~~~~~~---~~~~ngia~~~d~~~l~v~et----~~~~I~~~~~~g~~~g~~~  273 (391)
                      ...+. .-+..+...|+.+|.++ ++...+...   ......+++ |||+.|+++..    ....|+.+++.+   ++..
T Consensus       250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~---g~~~  325 (741)
T 2ecf_A          250 EQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS---NQQR  325 (741)
T ss_dssp             EEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT---CCEE
T ss_pred             EeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC---CceE
Confidence            00000 00011223788899988 876665422   234568899 99998887643    234677777654   2222


Q ss_pred             eec-c-cCC---CCCceEeCCCCCEEEEEc
Q 016318          274 AFA-I-LPG---YPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       274 ~~~-~-~~g---~p~~i~~d~~G~lwva~~  298 (391)
                      ... . ..+   ....++++++|+++++..
T Consensus       326 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~  355 (741)
T 2ecf_A          326 VLAHETSPTWVPLHNSLRFLDDGSILWSSE  355 (741)
T ss_dssp             EEEEEECSSCCCCCSCCEECTTSCEEEEEC
T ss_pred             EEEEcCCCCcCCcCCceEECCCCeEEEEec
Confidence            222 1 112   235788999998554433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.46  E-value=0.00029  Score=65.47  Aligned_cols=185  Identities=12%  Similarity=0.033  Sum_probs=109.2

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~V~  148 (391)
                      .-.++++.+++..+++++.|+.|..|+......+....                    ...+...++++++ +++ |..+
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--------------------~h~~~v~~v~~sp-~~~~l~s~  136 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV--------------------GHQSEVYSVAFSP-DNRQILSA  136 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE--------------------CCCSCEEEEEECS-STTEEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc--------------------CCCCcEEEEEECC-CCCEEEEE
Confidence            44678999999988999999999999876222221111                    1124467899998 555 5555


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC----------CEEEEeCCCcccchhheeeecccCCCceEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG----------NVYFTDSSTNYQRRNFMQLVFSAEDTGRVL  218 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G----------~ly~td~~~~~~~~~~~~~~~~~~~~g~l~  218 (391)
                      .....|..+|..+......... . ........+++.+++          .++++.+                 .+|.|.
T Consensus       137 ~~d~~i~~wd~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~  197 (343)
T 2xzm_R          137 GAEREIKLWNILGECKFSSAEK-E-NHSDWVSCVRYSPIMKSANKVQPFAPYFASVG-----------------WDGRLK  197 (343)
T ss_dssp             ETTSCEEEEESSSCEEEECCTT-T-SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE-----------------TTSEEE
T ss_pred             cCCCEEEEEeccCCceeeeecc-c-CCCceeeeeeeccccccccccCCCCCEEEEEc-----------------CCCEEE
Confidence            5455588888775433222111 0 111234566666654          4444432                 257888


Q ss_pred             EEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEE
Q 016318          219 KYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAI  297 (391)
Q Consensus       219 ~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~  297 (391)
                      .||........+...-...+.++++||+++|..+ ...+.|..+++..... ....+. .......+++++++.+.++.
T Consensus       198 iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg-s~dg~v~iwd~~~~~~-~~~~~~-~~~~v~~v~~sp~~~~la~~  273 (343)
T 2xzm_R          198 VWNTNFQIRYTFKAHESNVNHLSISPNGKYIATG-GKDKKLLIWDILNLTY-PQREFD-AGSTINQIAFNPKLQWVAVG  273 (343)
T ss_dssp             EEETTTEEEEEEECCSSCEEEEEECTTSSEEEEE-ETTCEEEEEESSCCSS-CSEEEE-CSSCEEEEEECSSSCEEEEE
T ss_pred             EEcCCCceeEEEcCccccceEEEECCCCCEEEEE-cCCCeEEEEECCCCcc-cceeec-CCCcEEEEEECCCCCEEEEE
Confidence            8995543333343334466789999999966554 5567888887632211 111121 12234678889998765443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.44  E-value=3.1e-05  Score=71.67  Aligned_cols=195  Identities=10%  Similarity=0.025  Sum_probs=113.8

Q ss_pred             CcceEEEccC---CCeeEEEecCCEEEEEeCCcee-EEEeecCCCcccCCCCCCccccccccCccCccceEE------Ee
Q 016318           70 GPESMAFDPL---GRGPYTGVADGRILFWDGLKWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR------FD  139 (391)
Q Consensus        70 gPe~i~~d~~---G~~ly~~~~~g~I~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~------~d  139 (391)
                      ...++++.++   |+.++++..+|.|..|+..... ......                    ...+....+.      ++
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~s  126 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK--------------------GHKEIINAIDGIGGLGIG  126 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC--------------------CCSSCEEEEEEESGGGCC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE--------------------ecccceEEEeeccccccC
Confidence            4567888888   6889999999999999876211 111110                    0122334453      35


Q ss_pred             cCCCcEEEEECCCCeEEEeCCCCe--eEEceeccCCCcccCCccee----ecCCCCEEEEeCCCcccchhheeeecccCC
Q 016318          140 KKTGDLYIADAYFGLMKVGPEGGL--ATSLATEAEGVPLRFTNDLD----IDDEGNVYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       140 ~~~g~L~V~d~~~gl~~~d~~~g~--~~~~~~~~~~~~~~~~~~l~----~d~~G~ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      +++..|+.+.....|..+|..+++  +..+. ...+........++    +.+++++.++.+.                 
T Consensus       127 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----------------  188 (357)
T 3i2n_A          127 EGAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKRDCWTVAFGNAYNQEERVVCAGYD-----------------  188 (357)
T ss_dssp             -CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEEEET-----------------
T ss_pred             CCccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCCceEEEEEEeccCCCCCEEEEEcc-----------------
Confidence            523345555544558888987764  22221 22222122445555    5678877766533                 


Q ss_pred             CceEEEEeCCCCeEEEeccCCCCcceEEEcc---CCCEEEEEeCCCCeEEEEEeccccCc-ccee--ecccCCCCCceEe
Q 016318          214 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK---DKSFFVFCEGSVGRLHKYWLIGEKAG-NLEA--FAILPGYPDNVRT  287 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~---d~~~l~v~et~~~~I~~~~~~g~~~g-~~~~--~~~~~g~p~~i~~  287 (391)
                      +|.+..||..+++...........+.++++|   +++.++++ +..+.|..+++...+.- ....  +....+....+++
T Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  267 (357)
T 3i2n_A          189 NGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH  267 (357)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred             CCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence            5789999999888765544445678999999   89877666 55678888887643211 1110  1112233456788


Q ss_pred             CCCCC-EEEEEcCCCch
Q 016318          288 NEKGE-FWVAIHCRRSL  303 (391)
Q Consensus       288 d~~G~-lwva~~~~~~~  303 (391)
                      +++|. ++++......+
T Consensus       268 ~~~~~~~l~~~~~dg~i  284 (357)
T 3i2n_A          268 LPQNRELFLTAGGAGGL  284 (357)
T ss_dssp             ETTEEEEEEEEETTSEE
T ss_pred             CCCCCcEEEEEeCCCcE
Confidence            88887 45444444333

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.41  E-value=4e-05  Score=76.25  Aligned_cols=187  Identities=10%  Similarity=-0.060  Sum_probs=118.3

Q ss_pred             ccCcceEEE-c-cCCCeeEEEe------------------cCCEEEEEeCCceeEEEeecCCCcccCCCCCCcccccccc
Q 016318           68 IQGPESMAF-D-PLGRGPYTGV------------------ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNE  127 (391)
Q Consensus        68 ~~gPe~i~~-d-~~G~~ly~~~------------------~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (391)
                      ..+|+++++ . ++++.+|++.                  .++.+-.+|.+..+....                     .
T Consensus       133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~q---------------------I  191 (595)
T 1fwx_A          133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQ---------------------V  191 (595)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEE---------------------E
T ss_pred             CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEE---------------------E
Confidence            368999998 4 8999888884                  234566666653222211                     1


Q ss_pred             CccCccceEEEecCCCcEEEEECCC--------------------------------------CeEEEeCCC--Cee--E
Q 016318          128 HICGRPLGLRFDKKTGDLYIADAYF--------------------------------------GLMKVGPEG--GLA--T  165 (391)
Q Consensus       128 ~~~g~P~gi~~d~~~g~L~V~d~~~--------------------------------------gl~~~d~~~--g~~--~  165 (391)
                      ...++|.+++++++++.+|+++...                                      ++.++|..+  ++.  .
T Consensus       192 ~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~  271 (595)
T 1fwx_A          192 LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTR  271 (595)
T ss_dssp             EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEE
T ss_pred             EeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEE
Confidence            1245788999988666678876432                                      355555554  211  1


Q ss_pred             EceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe------------EEEecc
Q 016318          166 SLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ------------TTVLLR  232 (391)
Q Consensus       166 ~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~------------~~~~~~  232 (391)
                      .+.      -...|.++.+++||+ +|+++-.                 +..+..||.++.+            +..-..
T Consensus       272 ~Ip------vg~~PhGv~~sPDGk~v~V~~~~-----------------s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          272 YIP------IANNPHGCNMAPDKKHLCVAGKL-----------------SPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             EEE------EESSCCCEEECTTSSEEEEECTT-----------------SSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             EEe------cCCCceEEEEcCCCCEEEEeCCC-----------------CCeEEEEECcccccccccccCcccceEEEcC
Confidence            110      014789999999996 7777633                 5788888877542            222223


Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecccc---C--ccceeecccC-----C---CCCceEeCCCCCEEEEEcC
Q 016318          233 NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK---A--GNLEAFAILP-----G---YPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       233 ~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~---~--g~~~~~~~~~-----g---~p~~i~~d~~G~lwva~~~  299 (391)
                      ....|.++++++|| .+|++....+.|.+++++...   .  ...++...++     |   ...+++.++||++.++.+.
T Consensus       329 vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          329 LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            34689999999999 799999889999999976410   0  1122332222     2   1256778999996666554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.41  E-value=6.7e-05  Score=70.37  Aligned_cols=186  Identities=11%  Similarity=0.063  Sum_probs=115.5

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-CCc-EEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGD-LYIA  148 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-~g~-L~V~  148 (391)
                      -.++++.++++.+++++.|+.|..|+...........                    ........+.+.+. +++ |+.+
T Consensus       157 v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--------------------~h~~~v~~~~~~~~~~g~~l~sg  216 (354)
T 2pbi_B          157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--------------------GHGADVLCLDLAPSETGNTFVSG  216 (354)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSSCEEEEEECCCSSCCEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--------------------CCCCCeEEEEEEeCCCCCEEEEE
Confidence            3578888999889999999999999876222211110                    01233456666542 344 5555


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      .....|..+|..+++........    ....+.+++.++|++.++.+.                 ++.+..||..+++..
T Consensus       217 s~Dg~v~~wd~~~~~~~~~~~~h----~~~v~~v~~~p~~~~l~s~s~-----------------D~~v~lwd~~~~~~~  275 (354)
T 2pbi_B          217 GCDKKAMVWDMRSGQCVQAFETH----ESDVNSVRYYPSGDAFASGSD-----------------DATCRLYDLRADREV  275 (354)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEE
T ss_pred             eCCCeEEEEECCCCcEEEEecCC----CCCeEEEEEeCCCCEEEEEeC-----------------CCeEEEEECCCCcEE
Confidence            54555999998877643322111    135788999999988777643                 578888998776544


Q ss_pred             EeccC---CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318          229 VLLRN---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       229 ~~~~~---~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      .....   ......++++|++++++.+ ...+.|..+++...  .....+....+....++++++|.+.++....
T Consensus       276 ~~~~~~~~~~~~~~~~~s~~g~~l~~g-~~d~~i~vwd~~~~--~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          276 AIYSKESIIFGASSVDFSLSGRLLFAG-YNDYTINVWDVLKG--SRVSILFGHENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             EEECCTTCCSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTC--SEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EEEcCCCcccceeEEEEeCCCCEEEEE-ECCCcEEEEECCCC--ceEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence            33322   1245689999999966655 55678888876421  1122222222344568899999876655443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.40  E-value=6.6e-05  Score=72.34  Aligned_cols=210  Identities=12%  Similarity=0.085  Sum_probs=121.5

Q ss_pred             cCcceEEEccC-CCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EE
Q 016318           69 QGPESMAFDPL-GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LY  146 (391)
Q Consensus        69 ~gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~  146 (391)
                      ..+.++++.++ ++++++++.+|.|..|+......    .......+..      ..........+.++++++ .+. ++
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~----~~~~~~~~~~------~~~~~~h~~~v~~l~~~~-~~~~~l  197 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPS----KPEPSGECQP------DLRLRGHQKEGYGLSWNP-NLNGYL  197 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCS----SCCTTCCCCC------SEEEECCSSCCCCEEECT-TSTTEE
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCccc----ccCccccCCC------cEEecCCCCCeEEEEeCC-CCCCeE
Confidence            36778999987 67788899999999887541000    0000000000      001111234568899998 444 55


Q ss_pred             EEECC-CCeEEEeCCCCee--EEc--eeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          147 IADAY-FGLMKVGPEGGLA--TSL--ATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       147 V~d~~-~gl~~~d~~~g~~--~~~--~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      ++... ..|..++..++..  ..+  .....+ ....+.++++.+ +++++++.+.                 +|.|..|
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~~-----------------dg~i~i~  259 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVAD-----------------DQKLMIW  259 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEET-----------------TSEEEEE
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEeC-----------------CCeEEEE
Confidence            54444 4488888876321  000  011111 123577889988 5677777643                 5789999


Q ss_pred             eCCCC----eEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEE
Q 016318          221 DPTTK----QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWV  295 (391)
Q Consensus       221 d~~~~----~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwv  295 (391)
                      |..++    ....+...-..++.++++|+++.++++....+.|..+++.... .....+....+....++++++|. +++
T Consensus       260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILA  338 (430)
T ss_dssp             ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred             ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCEEE
Confidence            98765    2233333345678999999998666665667889998876421 11223322234456788999885 566


Q ss_pred             EEcCCCchhhhhh
Q 016318          296 AIHCRRSLYSHLM  308 (391)
Q Consensus       296 a~~~~~~~~~~~l  308 (391)
                      +....+.+.++.+
T Consensus       339 s~~~d~~i~iwd~  351 (430)
T 2xyi_A          339 SSGTDRRLHVWDL  351 (430)
T ss_dssp             EEETTSCCEEEEG
T ss_pred             EEeCCCcEEEEeC
Confidence            5555544444333

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.39  E-value=7.6e-05  Score=72.29  Aligned_cols=159  Identities=9%  Similarity=0.069  Sum_probs=98.9

Q ss_pred             CcceEEEccCCCee-EEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           70 GPESMAFDPLGRGP-YTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        70 gPe~i~~d~~G~~l-y~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ...+++++++|+.+ +++..+|.|..|+..  .........                  .......+.++++++++..|+
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------~~~~~~~v~~~~~sp~~~~l~  165 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------RFCFSKRPNAISIAEDDTTVI  165 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------EEECSSCEEEEEECTTSSEEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------cccCCCCceEEEEcCCCCEEE
Confidence            45789999999975 678889988888643  111111000                  000125577899998444566


Q ss_pred             EEECCCCeEEEeCCCCeeEE-ceeccCCCcccCCcceeecCC---CCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          147 IADAYFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDE---GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       147 V~d~~~gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~l~~d~~---G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      +++....++.++..++.... ......+ ....+..+++.++   |++.++.+.                 ++.|..||.
T Consensus       166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~-----------------d~~i~vwd~  227 (450)
T 2vdu_B          166 IADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSDR-----------------DEHIKISHY  227 (450)
T ss_dssp             EEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEEET-----------------TSCEEEEEE
T ss_pred             EEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCCcEEEEEcC-----------------CCcEEEEEC
Confidence            66654558889887654321 0001111 1135678889988   876666533                 478888888


Q ss_pred             CCCeEE-Eec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          223 TTKQTT-VLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       223 ~~~~~~-~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .+++.. .+. ......+.++++ |+++++.+ ...+.|..+++..
T Consensus       228 ~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~-~~d~~v~vwd~~~  271 (450)
T 2vdu_B          228 PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA-GGDDKIFAWDWKT  271 (450)
T ss_dssp             SCTTCEEEECCCCSSCEEEEEEC-STTEEEEE-ESSSEEEEEETTT
T ss_pred             CCCceeeeeecCCCCceEEEEEC-CCCEEEEE-eCCCeEEEEECCC
Confidence            776543 323 233467889999 99966655 5567888888654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.39  E-value=0.00015  Score=73.40  Aligned_cols=102  Identities=18%  Similarity=0.171  Sum_probs=61.5

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      ...+++++++|+.+.+++.|+.|..|+.............                 ........++.++  +..+..+.
T Consensus       241 ~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~--~~~l~s~s  301 (611)
T 1nr0_A          241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG-----------------TRIEDQQLGIIWT--KQALVSIS  301 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-----------------SSGGGCEEEEEEC--SSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC-----------------CCccceeEEEEEc--CCEEEEEe
Confidence            4568999999999999999999999987622222111100                 0001223455553  44555555


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEe
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTD  194 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td  194 (391)
                      ....+..+++.+++........    ......+++.++|+..++.
T Consensus       302 ~d~~i~~~~~~~~~~~~~~~gh----~~~v~~l~~spdg~~l~s~  342 (611)
T 1nr0_A          302 ANGFINFVNPELGSIDQVRYGH----NKAITALSSSADGKTLFSA  342 (611)
T ss_dssp             TTCCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEE
T ss_pred             CCCcEEEEeCCCCCcceEEcCC----CCCEEEEEEeCCCCEEEEE
Confidence            5555888888877533221111    2346778888888766664

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.39  E-value=5.7e-05  Score=71.11  Aligned_cols=154  Identities=12%  Similarity=0.032  Sum_probs=102.5

Q ss_pred             CcceEEEcc-CCCeeEEEecCCEEEEEeCCc--eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           70 GPESMAFDP-LGRGPYTGVADGRILFWDGLK--WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        70 gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ...++++.+ +++.++++..++.|..|+...  ...+...                    .........+++++++..|+
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------~~~~~~v~~~~~~~~~~~l~  179 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKT--------------------DSWDYWYCCVDVSVSRQMLA  179 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECC--------------------CCSSCCEEEEEEETTTTEEE
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEecc--------------------CCCCCCeEEEEECCCCCEEE
Confidence            456888988 678899999999999998762  2222110                    00124467889998433455


Q ss_pred             EEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCC-
Q 016318          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT-  224 (391)
Q Consensus       147 V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-  224 (391)
                      +++....|..+|..+..+..+...     ...+..+++.++|. ++++.+.                 ++.+..||..+ 
T Consensus       180 ~~~~d~~i~i~d~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~  237 (383)
T 3ei3_B          180 TGDSTGRLLLLGLDGHEIFKEKLH-----KAKVTHAEFNPRCDWLMATSSV-----------------DATVKLWDLRNI  237 (383)
T ss_dssp             EEETTSEEEEEETTSCEEEEEECS-----SSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEEGGGC
T ss_pred             EECCCCCEEEEECCCCEEEEeccC-----CCcEEEEEECCCCCCEEEEEeC-----------------CCEEEEEeCCCC
Confidence            555445588889865555444321     13578899999987 6666533                 57888898876 


Q ss_pred             ---CeEEEeccCCCCcceEEEcc-CCCEEEEEeCCCCeEEEEEecc
Q 016318          225 ---KQTTVLLRNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       225 ---~~~~~~~~~~~~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g  266 (391)
                         ++.............++++| +++.++.+ ...+.|..+++..
T Consensus       238 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~-~~d~~i~iwd~~~  282 (383)
T 3ei3_B          238 KDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT-DQRNEIRVYSSYD  282 (383)
T ss_dssp             CSTTCEEEEEECSSCEEEEEECTTTSCEEEEE-ESSSEEEEEETTB
T ss_pred             CcccceEEEecCCCceEEEEEcCCCCCEEEEE-cCCCcEEEEECCC
Confidence               44443334445678899999 99976655 5567899888764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.38  E-value=0.0004  Score=65.94  Aligned_cols=209  Identities=13%  Similarity=-0.012  Sum_probs=117.1

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE-E
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI-A  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V-~  148 (391)
                      .-.++++.++|+.+.++. ++.+..|+...-...............+....  .............++|++ ++++++ +
T Consensus        66 ~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~v~~v~~s~-dg~~l~s~  141 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN--TSSSPSSDLYIRSVCFSP-DGKFLATG  141 (393)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------CCCCBEEEEEECT-TSSEEEEE
T ss_pred             EEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccccccc--ccccCCCceeEEEEEECC-CCCEEEEE
Confidence            346899999999666654 66787787652111111110000000000000  000000112356889998 565544 4


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      .....|..+|..+++.........    .....+++.++|+..++.+.                 ++.+..||..+++..
T Consensus       142 ~~d~~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~p~~~~l~s~s~-----------------d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          142 AEDRLIRIWDIENRKIVMILQGHE----QDIYSLDYFPSGDKLVSGSG-----------------DRTVRIWDLRTGQCS  200 (393)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEE
T ss_pred             cCCCeEEEEECCCCcEEEEEccCC----CCEEEEEEcCCCCEEEEecC-----------------CCcEEEEECCCCeeE
Confidence            444558888998876543322211    24678899999987776643                 578999999888765


Q ss_pred             EeccCCCCcceEEEcc-CCCEEEEEeCCCCeEEEEEeccccCccceeec-------ccCCCCCceEeCCCCCEEEEEcCC
Q 016318          229 VLLRNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-------ILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       229 ~~~~~~~~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-------~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      ...........++++| +++.+..+ ...+.|..+++....  ....+.       ...+....++++++|.+.++....
T Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~-s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d  277 (393)
T 1erj_A          201 LTLSIEDGVTTVAVSPGDGKYIAAG-SLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  277 (393)
T ss_dssp             EEEECSSCEEEEEECSTTCCEEEEE-ETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEcCCCcEEEEEECCCCCEEEEE-cCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence            5444444567889998 78855544 556778888754321  111111       011223568889999877766555


Q ss_pred             Cchhhh
Q 016318          301 RSLYSH  306 (391)
Q Consensus       301 ~~~~~~  306 (391)
                      +.+.++
T Consensus       278 ~~v~~w  283 (393)
T 1erj_A          278 RSVKLW  283 (393)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            555443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.38  E-value=8.7e-05  Score=69.93  Aligned_cols=193  Identities=15%  Similarity=0.131  Sum_probs=115.3

Q ss_pred             CcceEEEccC----C---CeeEEEecCCEEEEEeCC--c------eeEEEeecCCCcccCCCCCCccccccccCc--cCc
Q 016318           70 GPESMAFDPL----G---RGPYTGVADGRILFWDGL--K------WTDFAFTSNNRSELCNPKPIATSYLKNEHI--CGR  132 (391)
Q Consensus        70 gPe~i~~d~~----G---~~ly~~~~~g~I~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~  132 (391)
                      ...++++.++    |   +.++++..+|.|..|+..  .      +..+..                    ....  .+.
T Consensus        64 ~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~  123 (397)
T 1sq9_A           64 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL--------------------LDSDMKKHS  123 (397)
T ss_dssp             CEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECC--------------------SCTTGGGSC
T ss_pred             cEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecc--------------------cccccCCCc
Confidence            4568889988    8   889999999999988754  1      111100                    0000  255


Q ss_pred             cceEEEe----cCCCc-EEEEECCCCeEEEeCCC------Ce-eE-----Ecee--ccCCCcccCCcceeecCCCCEEEE
Q 016318          133 PLGLRFD----KKTGD-LYIADAYFGLMKVGPEG------GL-AT-----SLAT--EAEGVPLRFTNDLDIDDEGNVYFT  193 (391)
Q Consensus       133 P~gi~~d----~~~g~-L~V~d~~~gl~~~d~~~------g~-~~-----~~~~--~~~~~~~~~~~~l~~d~~G~ly~t  193 (391)
                      ...++++    +++.. |+++.....|..+|..+      ++ +.     .+..  .........+..+++.++| ++++
T Consensus       124 v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~  202 (397)
T 1sq9_A          124 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT  202 (397)
T ss_dssp             EEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE
T ss_pred             EEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEE
Confidence            6789999    74444 55555545577777665      22 22     2211  0001112357889999999 6555


Q ss_pred             eCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC-------CCCcceEEEccCCCEEEEEeCCC---CeEEEEE
Q 016318          194 DSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN-------LQFPNGLSLSKDKSFFVFCEGSV---GRLHKYW  263 (391)
Q Consensus       194 d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-------~~~~ngia~~~d~~~l~v~et~~---~~I~~~~  263 (391)
                      .+.                 +|.+..||..+++.......       ......++++|++++++++ ...   +.|..++
T Consensus       203 ~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~-~~d~~~g~i~i~d  264 (397)
T 1sq9_A          203 GFN-----------------NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYE  264 (397)
T ss_dssp             ECT-----------------TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE-EEETTEEEEEEEE
T ss_pred             EeC-----------------CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE-ecCCCCceEEEEE
Confidence            533                 57899999988766554443       4567789999999976665 444   6788887


Q ss_pred             eccccCccceeecc-------------cCCCCCceEeCCCCCEEEEEcCCCch
Q 016318          264 LIGEKAGNLEAFAI-------------LPGYPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       264 ~~g~~~g~~~~~~~-------------~~g~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      +...  .....+..             ..+....++++++|+++++......+
T Consensus       265 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  315 (397)
T 1sq9_A          265 TEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  315 (397)
T ss_dssp             TTTC--CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             CCCC--cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence            6532  11122222             22334568888899876665544433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.37  E-value=0.0003  Score=66.29  Aligned_cols=103  Identities=13%  Similarity=0.020  Sum_probs=63.1

Q ss_pred             CCcceeecCCCCEEE-EeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC
Q 016318          178 FTNDLDIDDEGNVYF-TDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV  256 (391)
Q Consensus       178 ~~~~l~~d~~G~ly~-td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~  256 (391)
                      +...+++.|||++.+ +..+                .++.|..||.++++.......-...+.++++|||+++..+ + .
T Consensus       135 ~~~~v~fSpDg~~la~as~~----------------~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~-s-~  196 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSK----------------VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYI-T-G  196 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESC----------------SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEE-C-S
T ss_pred             CEEEEEEcCCCCEEEEEECC----------------CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEec-c-c
Confidence            456789999997554 4432                2567888999988766555444567899999999966554 3 4


Q ss_pred             CeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEc
Q 016318          257 GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       257 ~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~  298 (391)
                      +.+.+++......-..............+++.++|.+.++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s  238 (365)
T 4h5i_A          197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS  238 (365)
T ss_dssp             SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE
T ss_pred             eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe
Confidence            567777754211000001111112235678888888666543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.36  E-value=0.00027  Score=66.58  Aligned_cols=260  Identities=12%  Similarity=0.072  Sum_probs=127.1

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCCceeEE-EeecCCCcccCCCCCCccccccccCccCcc--ceEEEecCCCcEEEEE
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDF-AFTSNNRSELCNPKPIATSYLKNEHICGRP--LGLRFDKKTGDLYIAD  149 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P--~gi~~d~~~g~L~V~d  149 (391)
                      +.+++ +|. +|+++.++.|+.++...-+.. ...... ...+            ...+..+  .....+  ++.+|+++
T Consensus        48 ~p~v~-~~~-v~~~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~------------~~~~~~~~~~~~~~~--~~~v~v~~  110 (376)
T 3q7m_A           48 HPALA-DNV-VYAADRAGLVKALNADDGKEIWSVSLAE-KDGW------------FSKEPALLSGGVTVS--GGHVYIGS  110 (376)
T ss_dssp             CCEEE-TTE-EEEECTTSEEEEEETTTCCEEEEEECCC----C------------CSCCCCCEEEEEEEE--TTEEEEEE
T ss_pred             ccEEE-CCE-EEEEcCCCeEEEEEccCCceeeeecCcc-cccc------------ccccCcccccCceEe--CCEEEEEc
Confidence            34453 454 999999999999998611111 111000 0000            0000111  223343  68999998


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                      ....|+.+|.++|+..--. ...+.   .....++ .+|.+|+...                  ++.|+.+|+++|+..-
T Consensus       111 ~~g~l~a~d~~tG~~~W~~-~~~~~---~~~~p~~-~~~~v~v~~~------------------~g~l~~~d~~tG~~~W  167 (376)
T 3q7m_A          111 EKAQVYALNTSDGTVAWQT-KVAGE---ALSRPVV-SDGLVLIHTS------------------NGQLQALNEADGAVKW  167 (376)
T ss_dssp             TTSEEEEEETTTCCEEEEE-ECSSC---CCSCCEE-ETTEEEEECT------------------TSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEECCCCCEEEEE-eCCCc---eEcCCEE-ECCEEEEEcC------------------CCeEEEEECCCCcEEE
Confidence            7777999999988654211 11111   1111222 2678998764                  3789999998887543


Q ss_pred             eccCCCC------cceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC---CC--------C-CceEeCCCC
Q 016318          230 LLRNLQF------PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP---GY--------P-DNVRTNEKG  291 (391)
Q Consensus       230 ~~~~~~~------~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~---g~--------p-~~i~~d~~G  291 (391)
                      -......      ....++. ++ .+|+. +..++|+.++.+.   |+........   +.        . ....+ .+|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~-~~-~v~~g-~~~g~l~~~d~~t---G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~  240 (376)
T 3q7m_A          168 TVNLDMPSLSLRGESAPTTA-FG-AAVVG-GDNGRVSAVLMEQ---GQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNG  240 (376)
T ss_dssp             EEECCC-----CCCCCCEEE-TT-EEEEC-CTTTEEEEEETTT---CCEEEEEECCC-----------CCCCCCEE-ETT
T ss_pred             EEeCCCCceeecCCCCcEEE-CC-EEEEE-cCCCEEEEEECCC---CcEEEEEecccCCCCcccccccccCCCcEE-ECC
Confidence            2211110      1223333 34 47776 5567888887542   2221111111   00        0 11122 357


Q ss_pred             CEEEEEcCCCchhhhhhhcCccceeeeeecCccceeee-----EEeecCccceEEEEECC-CCCEEEEEeCCCCCeeece
Q 016318          292 EFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHY-----LIHVGGRLHAMAVKYSP-EGKILQVLEDSKGKVVKAI  365 (391)
Q Consensus       292 ~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~g~~~~~i  365 (391)
                      .+|++...+.-.     .-.+..++.+.+.+.......     .+++. ...+.+.++|+ +|+.+.......+.   ..
T Consensus       241 ~v~~~~~~g~l~-----~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~-~~~g~l~~~d~~tG~~~w~~~~~~~~---~~  311 (376)
T 3q7m_A          241 VVFALAYNGNLT-----ALDLRSGQIMWKRELGSVNDFIVDGNRIYLV-DQNDRVMALTIDGGVTLWTQSDLLHR---LL  311 (376)
T ss_dssp             EEEEECTTSCEE-----EEETTTCCEEEEECCCCEEEEEEETTEEEEE-ETTCCEEEEETTTCCEEEEECTTTTS---CC
T ss_pred             EEEEEecCcEEE-----EEECCCCcEEeeccCCCCCCceEECCEEEEE-cCCCeEEEEECCCCcEEEeecccCCC---cc
Confidence            788876443221     123345566655543221100     11111 22345666774 56665554422222   23


Q ss_pred             eEEEEECCEEEEecCCCCeEEEEe
Q 016318          366 SEVEEKDGKLWMGSVLMPFVAVYD  389 (391)
Q Consensus       366 s~~~~~~g~Lylgs~~~~~i~~~~  389 (391)
                      +.....+++||+++.. ..+..++
T Consensus       312 ~~~~~~~~~l~v~~~~-g~l~~~d  334 (376)
T 3q7m_A          312 TSPVLYNGNLVVGDSE-GYLHWIN  334 (376)
T ss_dssp             CCCEEETTEEEEECTT-SEEEEEE
T ss_pred             cCCEEECCEEEEEeCC-CeEEEEE
Confidence            3344568899999864 3444444

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.36  E-value=9.7e-06  Score=76.49  Aligned_cols=177  Identities=10%  Similarity=-0.038  Sum_probs=104.4

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCcc--ceEEEecCCCcEEEE
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP--LGLRFDKKTGDLYIA  148 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P--~gi~~d~~~g~L~V~  148 (391)
                      ++++++||+.+++...++.|+.++..  ....+....                      .+..  ....+++ +++++++
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~----------------------~~~~~~~~~~~~~-dg~~l~~  141 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP----------------------AEWVGYGTWVANS-DCTKLVG  141 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC----------------------TTEEEEEEEEECT-TSSEEEE
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech----------------------hhcccccceeECC-CCCeecc
Confidence            56899999988888888899999876  222221111                      0111  1122355 5665553


Q ss_pred             E-----------------------CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCC-EEEEeCCCcccchh
Q 016318          149 D-----------------------AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGN-VYFTDSSTNYQRRN  203 (391)
Q Consensus       149 d-----------------------~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~-ly~td~~~~~~~~~  203 (391)
                      .                       ....|+.+|..+++.+.+....     ....++++++ ||+ |.++....      
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-----~~~~~~~~sp~dg~~l~~~~~~~------  210 (388)
T 3pe7_A          142 IEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN-----QWLGHPIYRPYDDSTVAFCHEGP------  210 (388)
T ss_dssp             EEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES-----SCEEEEEEETTEEEEEEEEECSC------
T ss_pred             ccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC-----ccccccEECCCCCCEEEEEEecC------
Confidence            1                       1134999999998877765321     2357788999 885 44444220      


Q ss_pred             heeeecccCCCceEEEEeCCCCeEEEeccCCC--CcceEEEccCCCEEEE-EeCCCC---eEEEEEeccccCccceeecc
Q 016318          204 FMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ--FPNGLSLSKDKSFFVF-CEGSVG---RLHKYWLIGEKAGNLEAFAI  277 (391)
Q Consensus       204 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--~~ngia~~~d~~~l~v-~et~~~---~I~~~~~~g~~~g~~~~~~~  277 (391)
                            ......+|+.+|.++++.+.+.....  ....++++|||+.|++ +...+.   .|+++++++.   +.+.+..
T Consensus       211 ------~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g---~~~~l~~  281 (388)
T 3pe7_A          211 ------HDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL---ENRQLTS  281 (388)
T ss_dssp             ------TTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC---CEEEEEE
T ss_pred             ------CCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC---ceEEEEc
Confidence                  00113589999988887777654432  2446789999997744 433222   3889887653   3333333


Q ss_pred             cCC------CCCceEeCCCCC
Q 016318          278 LPG------YPDNVRTNEKGE  292 (391)
Q Consensus       278 ~~g------~p~~i~~d~~G~  292 (391)
                      .++      .+++++++++|+
T Consensus       282 ~~~~~~~~~~~~~~~~spdg~  302 (388)
T 3pe7_A          282 MPACSHLMSNYDGSLMVGDGS  302 (388)
T ss_dssp             ECCEEEEEECTTSSEEEEEEC
T ss_pred             CCCceeeeecCCCCeEccCCC
Confidence            333      145555666665

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.35  E-value=0.00056  Score=63.52  Aligned_cols=191  Identities=9%  Similarity=0.016  Sum_probs=112.9

Q ss_pred             CcceEEE-----cc-CCCeeEEEecCCEEEEEeCCce-------eEEEeecCCCcccCCCCCCccccccccCccCccceE
Q 016318           70 GPESMAF-----DP-LGRGPYTGVADGRILFWDGLKW-------TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL  136 (391)
Q Consensus        70 gPe~i~~-----d~-~G~~ly~~~~~g~I~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi  136 (391)
                      .-.++++     .+ +|+.+++++.|+.|..|+...-       ....                    ...........+
T Consensus        23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~--------------------~l~~h~~~V~~~   82 (343)
T 2xzm_R           23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHK--------------------ALTGHNHFVSDL   82 (343)
T ss_dssp             CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEE--------------------EECCCSSCEEEE
T ss_pred             hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccc--------------------hhccCCCceEEE
Confidence            3456777     55 8888999999999998875410       0000                    011112445688


Q ss_pred             EEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318          137 RFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       137 ~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      ++++ ++.+.++... ..|..+|..+++........    ......+++.++|+..++.+.                 ++
T Consensus        83 ~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h----~~~v~~v~~sp~~~~l~s~~~-----------------d~  140 (343)
T 2xzm_R           83 ALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGH----QSEVYSVAFSPDNRQILSAGA-----------------ER  140 (343)
T ss_dssp             EECS-STTEEEEEETTSEEEEEETTSSCEEEEEECC----CSCEEEEEECSSTTEEEEEET-----------------TS
T ss_pred             EECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC----CCcEEEEEECCCCCEEEEEcC-----------------CC
Confidence            9988 5665554444 44888898877543221111    124678999999987776533                 57


Q ss_pred             eEEEEeCCCCeEEEecc---CCCCcceEEEccCC----------CEEEEEeCCCCeEEEEEeccccCccceeecccCCCC
Q 016318          216 RVLKYDPTTKQTTVLLR---NLQFPNGLSLSKDK----------SFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP  282 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~~---~~~~~ngia~~~d~----------~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p  282 (391)
                      .+..||...........   .......++++|++          .++ ++-...+.|..++..+   .....+....+..
T Consensus       141 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~---~~~~~~~~h~~~v  216 (343)
T 2xzm_R          141 EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYF-ASVGWDGRLKVWNTNF---QIRYTFKAHESNV  216 (343)
T ss_dssp             CEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEE-EEEETTSEEEEEETTT---EEEEEEECCSSCE
T ss_pred             EEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEE-EEEcCCCEEEEEcCCC---ceeEEEcCccccc
Confidence            78888876444333321   12245678888876          534 4445567787776322   1112222223345


Q ss_pred             CceEeCCCCCEEEEEcCCCchhhh
Q 016318          283 DNVRTNEKGEFWVAIHCRRSLYSH  306 (391)
Q Consensus       283 ~~i~~d~~G~lwva~~~~~~~~~~  306 (391)
                      ..++++++|++.++......+.++
T Consensus       217 ~~~~~s~~g~~l~sgs~dg~v~iw  240 (343)
T 2xzm_R          217 NHLSISPNGKYIATGGKDKKLLIW  240 (343)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEE
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEE
Confidence            678899999977765555554443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.35  E-value=0.00042  Score=64.02  Aligned_cols=158  Identities=9%  Similarity=0.017  Sum_probs=101.0

Q ss_pred             cCcceEEEccC----CCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC
Q 016318           69 QGPESMAFDPL----GRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (391)
Q Consensus        69 ~gPe~i~~d~~----G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~  141 (391)
                      ....++++.|+    ...++++..++.|..|+..   ....+....                  ..........+++.++
T Consensus        19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~   80 (366)
T 3k26_A           19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV------------------DADADENFYTCAWTYD   80 (366)
T ss_dssp             SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEE------------------CSCTTCCEEEEEEEEC
T ss_pred             CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecc------------------ccCCCCcEEEEEeccC
Confidence            34568888863    4457778888888888766   222222111                  0011345678888873


Q ss_pred             C---Cc-EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCce
Q 016318          142 T---GD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       142 ~---g~-L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      .   ++ |+++.....|..+|..+++........    ...+..+++.+ ++++.++.+.                 +|.
T Consensus        81 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~s~~~-----------------dg~  139 (366)
T 3k26_A           81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH----GNAINELKFHPRDPNLLLSVSK-----------------DHA  139 (366)
T ss_dssp             TTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC----CSCEEEEEECSSCTTEEEEEET-----------------TSC
T ss_pred             CCCCCCEEEEecCCCEEEEEEchhceEeeeecCC----CCcEEEEEECCCCCCEEEEEeC-----------------CCe
Confidence            1   34 444544444888998877543322211    23578889998 8887776543                 578


Q ss_pred             EEEEeCCCCeEEEec----cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          217 VLKYDPTTKQTTVLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       217 l~~~d~~~~~~~~~~----~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      |..||..+++.....    ........++++|+++.++.+ ...+.|..+++..
T Consensus       140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  192 (366)
T 3k26_A          140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC-GMDHSLKLWRINS  192 (366)
T ss_dssp             EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEE-ETTSCEEEEESCS
T ss_pred             EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEe-cCCCCEEEEECCC
Confidence            999999888765554    233466789999999966655 4567888888764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.34  E-value=0.00055  Score=74.81  Aligned_cols=156  Identities=13%  Similarity=0.036  Sum_probs=101.8

Q ss_pred             ccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE-
Q 016318           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY-  146 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~-  146 (391)
                      -..-.+++++++|+.+.+++.+|.|..|+......+....                    ...+...+++|++ ++++. 
T Consensus       615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--------------------~h~~~v~~~~~s~-~~~~l~  673 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--------------------AHEDEVLCCAFSS-DDSYIA  673 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------------------CCSSCEEEEEECT-TSSEEE
T ss_pred             cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec--------------------cCCCCEEEEEEec-CCCEEE
Confidence            3455678999999999999999999999876322222111                    1134567899998 55554 


Q ss_pred             EEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCC--CCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       147 V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~--G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      .+...+.|..+|..+++........    ......+++.++  +.+.++.+.                 ++.+..||..+
T Consensus       674 s~~~d~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~sg~~-----------------d~~v~vwd~~~  732 (1249)
T 3sfz_A          674 TCSADKKVKIWDSATGKLVHTYDEH----SEQVNCCHFTNKSNHLLLATGSN-----------------DFFLKLWDLNQ  732 (1249)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSSCCEEEEEET-----------------TSCEEEEETTS
T ss_pred             EEeCCCeEEEEECCCCceEEEEcCC----CCcEEEEEEecCCCceEEEEEeC-----------------CCeEEEEECCC
Confidence            4444444888999887543322221    124567788774  345555432                 57899999888


Q ss_pred             CeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          225 KQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       225 ~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ++..... ......+.++++|+++.++.+ +..+.|..+++..
T Consensus       733 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~-s~dg~v~vwd~~~  774 (1249)
T 3sfz_A          733 KECRNTMFGHTNSVNHCRFSPDDELLASC-SADGTLRLWDVRS  774 (1249)
T ss_dssp             SSEEEEECCCSSCEEEEEECSSTTEEEEE-ESSSEEEEEEGGG
T ss_pred             cchhheecCCCCCEEEEEEecCCCEEEEE-ECCCeEEEEeCCC
Confidence            7754433 333456789999999965554 5567788887653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.31  E-value=7.8e-05  Score=72.19  Aligned_cols=191  Identities=10%  Similarity=0.046  Sum_probs=119.4

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC---Cc-
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT---GD-  144 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~---g~-  144 (391)
                      ..+.+++++++|+.++++..+|.|+.++........        .+..        ......+.+.++++++ +   ++ 
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~--------~~~~--------~~~~h~~~v~~~~~sp-~~~~~~~  212 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK--------FTQE--------PILGHVSMLTDVHLIK-DSDGHQF  212 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSS--------CCCC--------CSEECSSCEEEEEEEE-CTTSCEE
T ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccc--------ccce--------eeecccCceEEEEEcC-CCCCCcE
Confidence            346789999999999999999999998764111000        0000        0111235567899998 5   54 


Q ss_pred             EEEEECCCCeEEEeCCCCeeE-EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 LYIADAYFGLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      |+.++....|..+|..+++.. .+....    ...+..+++. +|++.++.+.                 ++.|..||..
T Consensus       213 l~s~~~d~~i~vwd~~~~~~~~~~~~~h----~~~v~~~~~s-d~~~l~s~~~-----------------d~~v~vwd~~  270 (450)
T 2vdu_B          213 IITSDRDEHIKISHYPQCFIVDKWLFGH----KHFVSSICCG-KDYLLLSAGG-----------------DDKIFAWDWK  270 (450)
T ss_dssp             EEEEETTSCEEEEEESCTTCEEEECCCC----SSCEEEEEEC-STTEEEEEES-----------------SSEEEEEETT
T ss_pred             EEEEcCCCcEEEEECCCCceeeeeecCC----CCceEEEEEC-CCCEEEEEeC-----------------CCeEEEEECC
Confidence            455554555888888766432 221111    1356888999 8887777643                 5789999988


Q ss_pred             CCeEEEeccC--------------------------CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc
Q 016318          224 TKQTTVLLRN--------------------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI  277 (391)
Q Consensus       224 ~~~~~~~~~~--------------------------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~  277 (391)
                      +++.......                          -....+++++|++++++++....+.|..+++.....++.+....
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~  350 (450)
T 2vdu_B          271 TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQI  350 (450)
T ss_dssp             TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEE
T ss_pred             CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccE
Confidence            8764333210                          11345789999999888886567888888872221222233322


Q ss_pred             --cCCCCCceEeCCCCCEEEEEcC
Q 016318          278 --LPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       278 --~~g~p~~i~~d~~G~lwva~~~  299 (391)
                        .++.+.+++++++ .+|++...
T Consensus       351 ~~~~~~v~~~~~~~~-~~~v~~~~  373 (450)
T 2vdu_B          351 ITFPYNVISLSAHND-EFQVTLDN  373 (450)
T ss_dssp             EECSSCEEEEEEETT-EEEEEECC
T ss_pred             eccCCceEEEEecCC-cEEEEEec
Confidence              2355677888884 57777655

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.30  E-value=1.2e-05  Score=75.49  Aligned_cols=189  Identities=6%  Similarity=-0.044  Sum_probs=109.5

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCce---eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKW---TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ...++++.++|+.+++++.|+.|..|+...-   .....                    ..........+++++++..|+
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~--------------------~~~~~~~v~~~~~~~~~~~l~  116 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLV--------------------LLRLNRAATFVRWSPNEDKFA  116 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEE--------------------CCCCSSCEEEEECCTTSSCCE
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeE--------------------ecccCCceEEEEECCCCCEEE
Confidence            4568899999998999999999999876521   11111                    111234567889988444566


Q ss_pred             EEECCCCeEEEeCCCCe----eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          147 IADAYFGLMKVGPEGGL----ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       147 V~d~~~gl~~~d~~~g~----~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      ++.....|..+|.++++    .+.+..    .....+..+++.++|++.++.+.                 ++.+..||.
T Consensus       117 ~~~~d~~i~iwd~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~  175 (377)
T 3dwl_C          117 VGSGARVISVCYFEQENDWWVSKHLKR----PLRSTILSLDWHPNNVLLAAGCA-----------------DRKAYVLSA  175 (377)
T ss_dssp             EEESSSCEEECCC-----CCCCEEECS----SCCSCEEEEEECTTSSEEEEEES-----------------SSCEEEEEE
T ss_pred             EEecCCeEEEEEECCcccceeeeEeec----ccCCCeEEEEEcCCCCEEEEEeC-----------------CCEEEEEEE
Confidence            66655558888887764    222221    11235788999999987776533                 467777776


Q ss_pred             CCCe------------------EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcc--ceeecccCCCC
Q 016318          223 TTKQ------------------TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN--LEAFAILPGYP  282 (391)
Q Consensus       223 ~~~~------------------~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~--~~~~~~~~g~p  282 (391)
                      .+++                  ...........+.++++||+++++.+ ...+.|..+++.......  ...+....+..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v  254 (377)
T 3dwl_C          176 YVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYA-GHDSSVTIAYPSAPEQPPRALITVKLSQLPL  254 (377)
T ss_dssp             CCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEE-ETTTEEC-CEECSTTSCEEECCCEECSSSCE
T ss_pred             EecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEE-eCCCcEEEEECCCCCCcceeeEeecCCCCce
Confidence            4221                  11111222346789999999966655 556788888876532100  11222222334


Q ss_pred             CceEeCCCCCEEEEEcCC
Q 016318          283 DNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       283 ~~i~~d~~G~lwva~~~~  300 (391)
                      ..++++++|.+.++....
T Consensus       255 ~~~~~s~~~~~l~~~~~~  272 (377)
T 3dwl_C          255 RSLLWANESAIVAAGYNY  272 (377)
T ss_dssp             EEEEEEETTEEEEEESSS
T ss_pred             EEEEEcCCCCEEEEEcCC
Confidence            578888899876665443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.30  E-value=0.00036  Score=66.80  Aligned_cols=209  Identities=11%  Similarity=0.113  Sum_probs=115.4

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCcee-----------EEEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWT-----------DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~  138 (391)
                      .-.+++++++|+.+.++..+|.|..|+.....           ...........        -.++......+....+++
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------~~~~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPE--------FDYLKSLEIEEKINKIRW  101 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCE--------EEGGGTEEECCCCCEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccccccc--------ccccccccccCceEEEEE
Confidence            45688999999999999999999999765111           11111000000        000000000145678999


Q ss_pred             ecCC--CcEEEEECCCCeEEEeCCCCeeEEce------------------------------------eccCCCcccCCc
Q 016318          139 DKKT--GDLYIADAYFGLMKVGPEGGLATSLA------------------------------------TEAEGVPLRFTN  180 (391)
Q Consensus       139 d~~~--g~L~V~d~~~gl~~~d~~~g~~~~~~------------------------------------~~~~~~~~~~~~  180 (391)
                      .+++  ..|..+.....|..++..++......                                    ..........+.
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            9843  23555544444766666543321000                                    000001123567


Q ss_pred             ceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC-CeEEEe--------ccCCCCcceEEEccCC-CEEE
Q 016318          181 DLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT-KQTTVL--------LRNLQFPNGLSLSKDK-SFFV  250 (391)
Q Consensus       181 ~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~--------~~~~~~~ngia~~~d~-~~l~  250 (391)
                      .+++.++|+++++. .                 ++.|..||..+ ++....        ...-...+.++++|++ +.++
T Consensus       182 ~~~~~~~~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  243 (447)
T 3dw8_B          182 SISINSDYETYLSA-D-----------------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV  243 (447)
T ss_dssp             EEEECTTSSEEEEE-C-----------------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred             EEEEcCCCCEEEEe-C-----------------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence            88899999877775 3                 57888999873 322221        1122346789999998 7554


Q ss_pred             EEeCCCCeEEEEEeccccCc--cceeecccCC------------CCCceEeCCCCCEEEEEcCCCchhhh
Q 016318          251 FCEGSVGRLHKYWLIGEKAG--NLEAFAILPG------------YPDNVRTNEKGEFWVAIHCRRSLYSH  306 (391)
Q Consensus       251 v~et~~~~I~~~~~~g~~~g--~~~~~~~~~g------------~p~~i~~d~~G~lwva~~~~~~~~~~  306 (391)
                      .+ +..+.|..+++......  ....+.....            ....++++++|++.++... ..+.++
T Consensus       244 s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iw  311 (447)
T 3dw8_B          244 YS-SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVW  311 (447)
T ss_dssp             EE-ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEE
T ss_pred             EE-eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEE
Confidence            44 56678888887643211  1233322111            3457889999997776555 554443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.29  E-value=0.001  Score=68.16  Aligned_cols=188  Identities=12%  Similarity=0.082  Sum_probs=116.6

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ..-.++++.++|+.+.+++.||.|..|+...........                    ...+...++++++++..|..+
T Consensus       431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~s~~~~~l~s~  490 (694)
T 3dm0_A          431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV--------------------GHTKDVLSVAFSLDNRQIVSA  490 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------CCSSCEEEEEECTTSSCEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe--------------------CCCCCEEEEEEeCCCCEEEEE
Confidence            345688999999999999999999999876222211111                    113446788999844445555


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC--CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG--NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G--~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      .....|..+|..+.....+.....+ .......+++.+++  .+.++.+.                 ++.|..||..+++
T Consensus       491 s~D~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~-----------------d~~v~vwd~~~~~  552 (694)
T 3dm0_A          491 SRDRTIKLWNTLGECKYTISEGGEG-HRDWVSCVRFSPNTLQPTIVSASW-----------------DKTVKVWNLSNCK  552 (694)
T ss_dssp             ETTSCEEEECTTSCEEEEECSSTTS-CSSCEEEEEECSCSSSCEEEEEET-----------------TSCEEEEETTTCC
T ss_pred             eCCCEEEEEECCCCcceeeccCCCC-CCCcEEEEEEeCCCCcceEEEEeC-----------------CCeEEEEECCCCc
Confidence            5555588888765543333221111 12346778888876  34555432                 5789999988877


Q ss_pred             EEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCceEeCCCCCEEEEEcC
Q 016318          227 TTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       227 ~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      ...... .....+.++++||++.+..+ ...+.|..+++...   + .... ........+++++++.+.++...
T Consensus       553 ~~~~~~~h~~~v~~v~~spdg~~l~sg-~~Dg~i~iwd~~~~---~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~  622 (694)
T 3dm0_A          553 LRSTLAGHTGYVSTVAVSPDGSLCASG-GKDGVVLLWDLAEG---K-KLYSLEANSVIHALCFSPNRYWLCAATE  622 (694)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEE-ETTSBCEEEETTTT---E-EEECCBCSSCEEEEEECSSSSEEEEEET
T ss_pred             EEEEEcCCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCC---c-eEEEecCCCcEEEEEEcCCCcEEEEEcC
Confidence            654433 33456789999999955444 55677888876532   1 1111 12233456888998876665443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.29  E-value=0.00013  Score=67.05  Aligned_cols=136  Identities=9%  Similarity=0.150  Sum_probs=85.5

Q ss_pred             CCCeeEEEec--CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC---
Q 016318           79 LGRGPYTGVA--DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY---  151 (391)
Q Consensus        79 ~G~~ly~~~~--~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~---  151 (391)
                      +|+.+|....  +++|++++.+  ..+.+..                         ..+.-|..  +++.||.++..   
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~-------------------------~~~~~i~~--~g~~Iyy~~~~~~~   76 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN-------------------------DTAMYINA--DKNYVYYVRNNNQK   76 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSCSCEEEEE-------------------------EEEEEEEE--CSSEEEEEEECC--
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCCCCEEccC-------------------------CceeeEEE--cCCEEEEEECCCCc
Confidence            4455676642  5899999876  2222221                         11233333  35677766542   


Q ss_pred             -----------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          152 -----------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       152 -----------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                                 ..|++++.++++.+.+....       .+.++++ .+.||+++.+              ......|++.
T Consensus        77 ~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~-------~~~~s~~-g~~Iy~~~~~--------------~~~~~~Iy~~  134 (302)
T 3s25_A           77 ITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP-------CIYASLI-GNYIYYLHYD--------------TQTATSLYRI  134 (302)
T ss_dssp             ----CCSSCCSEEEEEEETTSCCCEEEECSC-------EEEEEEE-TTEEEEEEES--------------SSSCEEEEEE
T ss_pred             ccccceeccCCCeEEEEeCCCCcceEeecCC-------ccEEEEe-CCEEEEEeec--------------CCCCceEEEE
Confidence                       24999999988766654321       1233332 3479998811              0124689999


Q ss_pred             eCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318          221 DPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       221 d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~  267 (391)
                      +.++...+.+.....    .+++++++.||+++....+|++++++|.
T Consensus       135 ~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          135 RIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             ETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT
T ss_pred             ECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC
Confidence            988777666654432    4567899999999887789999998874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.29  E-value=0.00011  Score=74.43  Aligned_cols=195  Identities=11%  Similarity=0.032  Sum_probs=112.2

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      +|.+++++|+|+.+.++. ++.|..++..........                    .........++|++ +|++.++.
T Consensus        20 ~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~--------------------~~h~~~v~~~~~sp-dg~~lasg   77 (611)
T 1nr0_A           20 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY--------------------TEHSHQTTVAKTSP-SGYYCASG   77 (611)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEE--------------------CCCSSCEEEEEECT-TSSEEEEE
T ss_pred             ceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEe--------------------cCCCCceEEEEECC-CCcEEEEE
Confidence            678899999999777766 568888876411111100                    01124467889999 67655544


Q ss_pred             CCCC-eEEEeCCCCeeEEc--eeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          150 AYFG-LMKVGPEGGLATSL--ATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       150 ~~~g-l~~~d~~~g~~~~~--~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      ...| |..+|..+++....  .....    ...++++++++|...++.+..             ....+.+..+|.. ..
T Consensus        78 ~~d~~v~lWd~~~~~~~~~~~~~~~~----~~v~~v~fs~dg~~l~~~~~~-------------~~~~~~v~~wd~~-~~  139 (611)
T 1nr0_A           78 DVHGNVRIWDTTQTTHILKTTIPVFS----GPVKDISWDSESKRIAAVGEG-------------RERFGHVFLFDTG-TS  139 (611)
T ss_dssp             ETTSEEEEEESSSTTCCEEEEEECSS----SCEEEEEECTTSCEEEEEECC-------------SSCSEEEEETTTC-CB
T ss_pred             eCCCCEEEeECCCCcceeeEeecccC----CceEEEEECCCCCEEEEEECC-------------CCceeEEEEeeCC-CC
Confidence            4444 77778754322111  11111    247889999999876664321             0113567777742 22


Q ss_pred             EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCchhhh
Q 016318          227 TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSH  306 (391)
Q Consensus       227 ~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~  306 (391)
                      ...+...-...+.++++|++...+++-...+.|..++....  .....+....+....++++++|++.++......+.++
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~--~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lw  217 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY  217 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC--eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEE
Confidence            22233333456789999998755566566677777764321  1112222222345678899999987776665555443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.28  E-value=6.2e-05  Score=72.54  Aligned_cols=193  Identities=12%  Similarity=0.009  Sum_probs=121.0

Q ss_pred             CcceEEEccCCC-eeEEEecCCEEEEEeCCce----eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           70 GPESMAFDPLGR-GPYTGVADGRILFWDGLKW----TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        70 gPe~i~~d~~G~-~ly~~~~~g~I~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ...++++++++. .++++..+|.|..|+....    ..+...                 .......+...+++++++++.
T Consensus       183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----------------~~~~~h~~~v~~v~~~p~~~~  245 (430)
T 2xyi_A          183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAK-----------------NIFTGHTAVVEDVAWHLLHES  245 (430)
T ss_dssp             CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECS-----------------EEECCCSSCEEEEEECSSCTT
T ss_pred             CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccc-----------------eeecCCCCCEeeeEEeCCCCC
Confidence            467899999887 8999999999999987520    000000                 011112345778999885566


Q ss_pred             EEEEECCCC-eEEEeCCCCe----eEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEE
Q 016318          145 LYIADAYFG-LMKVGPEGGL----ATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVL  218 (391)
Q Consensus       145 L~V~d~~~g-l~~~d~~~g~----~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~  218 (391)
                      ++++....| |..+|..++.    +..+. ..    ...++.+++.++|. ++++.+.                 +|.|.
T Consensus       246 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~----~~~v~~i~~~p~~~~~l~tg~~-----------------dg~v~  303 (430)
T 2xyi_A          246 LFGSVADDQKLMIWDTRNNNTSKPSHTVD-AH----TAEVNCLSFNPYSEFILATGSA-----------------DKTVA  303 (430)
T ss_dssp             EEEEEETTSEEEEEETTCSCSSSCSEEEE-CC----SSCEEEEEECSSCTTEEEEEET-----------------TSEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCCCcceeEee-cC----CCCeEEEEeCCCCCCEEEEEeC-----------------CCeEE
Confidence            666555544 8888887652    11121 11    13578899999885 6766533                 57888


Q ss_pred             EEeCCCC-e-EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCc---------cceeeccc---CCCCCc
Q 016318          219 KYDPTTK-Q-TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAG---------NLEAFAIL---PGYPDN  284 (391)
Q Consensus       219 ~~d~~~~-~-~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g---------~~~~~~~~---~g~p~~  284 (391)
                      .||..+. + ...+.........++++|+++.++++....++|..+++......         ..+.....   .+.+..
T Consensus       304 vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  383 (430)
T 2xyi_A          304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  383 (430)
T ss_dssp             EEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE
T ss_pred             EEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE
Confidence            9998763 2 33443334567789999999767777677788888887642110         01222222   234677


Q ss_pred             eEeCCCCC-EEEEEcCCC
Q 016318          285 VRTNEKGE-FWVAIHCRR  301 (391)
Q Consensus       285 i~~d~~G~-lwva~~~~~  301 (391)
                      ++.+++|. ++++....+
T Consensus       384 ~~~~p~~~~~l~s~s~dg  401 (430)
T 2xyi_A          384 FSWNPNEPWIICSVSEDN  401 (430)
T ss_dssp             EEECSSSTTEEEEEETTS
T ss_pred             EEECCCCCCEEEEEECCC
Confidence            88999998 666655443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.28  E-value=8e-05  Score=77.44  Aligned_cols=191  Identities=7%  Similarity=-0.081  Sum_probs=117.5

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~V~  148 (391)
                      ...+++++++|+.+.+++.+|.|..|+...........                    ...+....+++++ ++. |.++
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--------------------~~~~~v~~~~~s~-~~~~l~~~  115 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--------------------AHPDYIRSIAVHP-TKPYVLSG  115 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSSCEEEEEECS-SSSEEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--------------------cCCCCEEEEEEeC-CCCEEEEE
Confidence            45688999999999999999999999876222221111                    1134567889998 554 5555


Q ss_pred             ECCCCeEEEeCCCC-eeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          149 DAYFGLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       149 d~~~gl~~~d~~~g-~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      +....|..+|.+++ .........    ...+..+++.+ +|+..++.+.                 +|.|..||..+++
T Consensus       116 ~~dg~i~vw~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~~~~-----------------dg~v~vwd~~~~~  174 (814)
T 3mkq_A          116 SDDLTVKLWNWENNWALEQTFEGH----EHFVMCVAFNPKDPSTFASGCL-----------------DRTVKVWSLGQST  174 (814)
T ss_dssp             ETTSEEEEEEGGGTSEEEEEEECC----SSCEEEEEEETTEEEEEEEEET-----------------TSEEEEEETTCSS
T ss_pred             cCCCEEEEEECCCCceEEEEEcCC----CCcEEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCc
Confidence            54445888887765 322222211    12467788888 7766666533                 5789999986654


Q ss_pred             EEE-eccC-CCCcceEEEcc--CCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          227 TTV-LLRN-LQFPNGLSLSK--DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       227 ~~~-~~~~-~~~~ngia~~~--d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      ... +... ....+.++++|  +++.++++ +..+.|..+++...+  ....+....+....++++++|.+.++......
T Consensus       175 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  251 (814)
T 3mkq_A          175 PNFTLTTGQERGVNYVDYYPLPDKPYMITA-SDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISGSEDGT  251 (814)
T ss_dssp             CSEEEECCCTTCCCEEEECCSTTCCEEEEE-CTTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             ceeEEecCCCCCEEEEEEEECCCCCEEEEE-eCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe
Confidence            322 2222 24567899998  88866655 667788888765321  12222222233456788888886665554444


Q ss_pred             hhh
Q 016318          303 LYS  305 (391)
Q Consensus       303 ~~~  305 (391)
                      +..
T Consensus       252 v~v  254 (814)
T 3mkq_A          252 LKI  254 (814)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.26  E-value=2.6e-05  Score=73.88  Aligned_cols=200  Identities=8%  Similarity=-0.077  Sum_probs=113.2

Q ss_pred             cCcceEEEccCCCeeEEEecC--CEEEE--EeCCceeEEEeec-------CCC--cccCCCCCCc------c-----ccc
Q 016318           69 QGPESMAFDPLGRGPYTGVAD--GRILF--WDGLKWTDFAFTS-------NNR--SELCNPKPIA------T-----SYL  124 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~--g~I~~--~~~~~~~~~~~~~-------~~~--~~~~~~~~~~------~-----~~~  124 (391)
                      ..|+.+++++||+.+|++...  ..+..  +|......+....       ...  ...|. .+..      .     ..+
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~-dg~~~~vd~~~~~~~~~~v  202 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSC-PASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCC-TTSCEEEECCSSCCCCEEC
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcC-CCCEEEEECccccccCCeE
Confidence            469999999999999998753  45666  6664322221100       000  00111 0000      0     000


Q ss_pred             -----cccCccCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceec-cC-C---CcccCCcc---eeecCCC-CE
Q 016318          125 -----KNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATE-AE-G---VPLRFTND---LDIDDEG-NV  190 (391)
Q Consensus       125 -----~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~-~~-~---~~~~~~~~---l~~d~~G-~l  190 (391)
                           .......+|.  . .++++.+|+.+. +.+..+|..++..+..... .. .   .....|.+   ++++++| ++
T Consensus       203 ~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~l  278 (368)
T 1mda_H          203 GAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI  278 (368)
T ss_dssp             CCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             EEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEE
Confidence                 0111234465  3 443566777666 6699999876543332211 00 0   01112333   7889886 69


Q ss_pred             EEEeC---CCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeC-CCCeEEEEEecc
Q 016318          191 YFTDS---STNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEG-SVGRLHKYWLIG  266 (391)
Q Consensus       191 y~td~---~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et-~~~~I~~~~~~g  266 (391)
                      |++..   +..         +.   ..+.+..+|.++++...-......|+||++++||+.+|++.. ..+.|..++.+.
T Consensus       279 yV~~~~~~~~~---------~~---~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          279 MILTVEHSRSC---------LA---AAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEEEECSSCT---------TS---CEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             EEEeccccCcc---------cc---cCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            98763   100         00   013566999998876554433347999999999998888877 589999999654


Q ss_pred             ccCccceeecc--cCCCCCceEeCCC
Q 016318          267 EKAGNLEAFAI--LPGYPDNVRTNEK  290 (391)
Q Consensus       267 ~~~g~~~~~~~--~~g~p~~i~~d~~  290 (391)
                           .++...  ..+.|++|++..+
T Consensus       347 -----~kvv~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          347 -----DQDQSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             -----CEEEEECCCCSCCCEEECCCC
T ss_pred             -----CcEEEEEECCCCCCEEEeecC
Confidence                 233333  3457999988653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.26  E-value=0.00067  Score=64.03  Aligned_cols=196  Identities=12%  Similarity=0.096  Sum_probs=112.7

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .-.++++.++|+.+.+++.||.|..|+...........                    ........+++++ ++++.++.
T Consensus        68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--------------------~h~~~v~~~~~s~-~g~~las~  126 (380)
T 3iz6_a           68 KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK--------------------LHCPWVMECAFAP-NGQSVACG  126 (380)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--------------------CCCTTCCCCEECT-TSSEEEEC
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe--------------------cCCCCEEEEEECC-CCCEEEEe
Confidence            45688999999989999999999999876222111111                    0123356778988 56655543


Q ss_pred             CC-CCeEEEeCCCCeeEE----ceeccCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          150 AY-FGLMKVGPEGGLATS----LATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       150 ~~-~gl~~~d~~~g~~~~----~~~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      .. ..+..++..+.....    ......+. ......+++.++ +...++.+.                 ++.+..||..
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh-~~~v~~~~~~~~~~~~l~s~s~-----------------D~~i~~wd~~  188 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGNMPVSRVLTGH-KGYASSCQYVPDQETRLITGSG-----------------DQTCVLWDVT  188 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCSSTTCCBCCCC-SSCCCCCBCCSSSSSCEEEECT-----------------TSCEEEECTT
T ss_pred             eCCCcEEEEECCCCccccCCccceeeccCC-CcceEEEEEecCCCCEEEEECC-----------------CCcEEEEEcC
Confidence            33 446666654321100    00011111 123455666664 344444432                 5789999998


Q ss_pred             CCeEEEecc-C-----CCCcceEEEcc-CCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEE
Q 016318          224 TKQTTVLLR-N-----LQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       224 ~~~~~~~~~-~-----~~~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva  296 (391)
                      +++...... .     ......+++++ +++ ++++-...+.|..+++.... .....+....+....++++++|+++++
T Consensus       189 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s  266 (380)
T 3iz6_a          189 TGQRISIFGSEFPSGHTADVLSLSINSLNAN-MFISGSCDTTVRLWDLRITS-RAVRTYHGHEGDINSVKFFPDGQRFGT  266 (380)
T ss_dssp             TCCEEEEECCCSSSSCCSCEEEEEECSSSCC-EEEEEETTSCEEEEETTTTC-CCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred             CCcEEEEeecccCCCCccCeEEEEeecCCCC-EEEEEECCCeEEEEECCCCC-cceEEECCcCCCeEEEEEecCCCeEEE
Confidence            876544331 1     12345677766 667 55555667788888765211 112233333345678999999998777


Q ss_pred             EcCCCchhhh
Q 016318          297 IHCRRSLYSH  306 (391)
Q Consensus       297 ~~~~~~~~~~  306 (391)
                      ......+.++
T Consensus       267 ~s~D~~i~lw  276 (380)
T 3iz6_a          267 GSDDGTCRLF  276 (380)
T ss_dssp             ECSSSCEEEE
T ss_pred             EcCCCeEEEE
Confidence            6665555444

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.26  E-value=0.00029  Score=66.54  Aligned_cols=201  Identities=12%  Similarity=0.085  Sum_probs=120.7

Q ss_pred             cccCcceEEEccCCCeeEEEecC---------------CEEEEEeCCce--eEEEeecCCCcccCCCCCCccccccccCc
Q 016318           67 QIQGPESMAFDPLGRGPYTGVAD---------------GRILFWDGLKW--TDFAFTSNNRSELCNPKPIATSYLKNEHI  129 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~~---------------g~I~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (391)
                      .+...-++.+|+.|++|..++..               -+|+.+|...-  +.+....      +..        .....
T Consensus        85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~------~p~--------~~~~~  150 (381)
T 3q6k_A           85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYY------FPT--------RLVEK  150 (381)
T ss_dssp             SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEE------CCG--------GGCCC
T ss_pred             ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEE------CCH--------Hhccc
Confidence            47788899999999844445431               25677766521  2221110      000        01111


Q ss_pred             cCccceEEEe-cC------CCcEEEEECC-CCeEEEeCCCCeeEEceec-----------cCCCcc---cCCcceeecCC
Q 016318          130 CGRPLGLRFD-KK------TGDLYIADAY-FGLMKVGPEGGLATSLATE-----------AEGVPL---RFTNDLDIDDE  187 (391)
Q Consensus       130 ~g~P~gi~~d-~~------~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~-----------~~~~~~---~~~~~l~~d~~  187 (391)
                      ...-..+++| .+      ++..||+|.. .||.++|..+++..++...           .+|..+   ...++|+++++
T Consensus       151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~  230 (381)
T 3q6k_A          151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR  230 (381)
T ss_dssp             GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred             CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence            2445678888 21      3568999986 5799999998876655421           112222   35677888875


Q ss_pred             ----C-CEEEEeCCCcccchhheeeecccCCCceEEEEeCC-------CCeEEEeccCC--CCcceEEEc-cCCCEEEEE
Q 016318          188 ----G-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT-------TKQTTVLLRNL--QFPNGLSLS-KDKSFFVFC  252 (391)
Q Consensus       188 ----G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-------~~~~~~~~~~~--~~~ngia~~-~d~~~l~v~  252 (391)
                          + .||+...++                 .++++..++       ..+++.+-+..  ....+.+++ .+|. ||++
T Consensus       231 ~~~~~~~LYf~plss-----------------~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~-ly~~  292 (381)
T 3q6k_A          231 DSEGNRPAYYLAGSA-----------------IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKV-IFFA  292 (381)
T ss_dssp             CTTSCCEEEEEESSC-----------------SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCE-EEEE
T ss_pred             cCCCCeEEEEEECCC-----------------CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCe-EEEE
Confidence                3 699987442                 245544310       12333333322  122346676 5565 9999


Q ss_pred             eCCCCeEEEEEecc-c-cCccceeecccC--CCCCceEeCCCCCEEEEEcC
Q 016318          253 EGSVGRLHKYWLIG-E-KAGNLEAFAILP--GYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       253 et~~~~I~~~~~~g-~-~~g~~~~~~~~~--g~p~~i~~d~~G~lwva~~~  299 (391)
                      +...+.|.+++..+ + +..+.+++..-+  -+|+++.++.+|.+|+....
T Consensus       293 ~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          293 EANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             ESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             eccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence            99999999998765 3 124455555333  37999999999999998755

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.25  E-value=0.00054  Score=63.56  Aligned_cols=188  Identities=10%  Similarity=0.004  Sum_probs=112.7

Q ss_pred             cCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCe
Q 016318           78 PLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (391)
Q Consensus        78 ~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl  154 (391)
                      .+++.++++..||.|..|+..   ....+....                  .......|.-+.-+. ++.+.+-+....+
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~------------------v~~~~~~~~~~s~s~-D~~i~~w~~~~~~  106 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPN------------------PRTGGEHPAIISRGP-CNRLLLLYPGNQI  106 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEEEEC------------------CCTTCCCCSEEEECS-TTEEEEEETTTEE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEecCC------------------ceeeeeCCceEEecC-CCeEEEEEccCce
Confidence            456779999999999999865   222222110                  000112233222333 6777777766667


Q ss_pred             EEEeCCCCe-eEEceeccCCCcccCCcceeecC--CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318          155 MKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDD--EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       155 ~~~d~~~g~-~~~~~~~~~~~~~~~~~~l~~d~--~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  231 (391)
                      ..++..+++ ++.+....    ......+++.+  +|+++++.+.                 +|.+..||..+++.....
T Consensus       107 ~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~~wd~~~~~~~~~~  165 (343)
T 3lrv_A          107 TILDSKTNKVLREIEVDS----ANEIIYMYGHNEVNTEYFIWADN-----------------RGTIGFQSYEDDSQYIVH  165 (343)
T ss_dssp             EEEETTTCCEEEEEECCC----SSCEEEEECCC---CCEEEEEET-----------------TCCEEEEESSSSCEEEEE
T ss_pred             EEeecCCcceeEEeecCC----CCCEEEEEcCCCCCCCEEEEEeC-----------------CCcEEEEECCCCcEEEEE
Confidence            777877765 32222111    12467888999  8988887643                 578999999888775443


Q ss_pred             cC--CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcCCCchhhhhh
Q 016318          232 RN--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLM  308 (391)
Q Consensus       232 ~~--~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l  308 (391)
                      ..  ....+.++++||++.+..+ +..+.|..+++...+.- ...+.. ..+....++++++|.+.++.... .+.++.+
T Consensus       166 ~~~~~~~i~~~~~~pdg~~lasg-~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~  242 (343)
T 3lrv_A          166 SAKSDVEYSSGVLHKDSLLLALY-SPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDL  242 (343)
T ss_dssp             CCCSSCCCCEEEECTTSCEEEEE-CTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEET
T ss_pred             ecCCCCceEEEEECCCCCEEEEE-cCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEc
Confidence            22  2246789999999955444 66778888887643211 022322 23445678999999876665543 4444433

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.25  E-value=0.00056  Score=62.15  Aligned_cols=195  Identities=13%  Similarity=0.083  Sum_probs=108.7

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-CCcEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGDLY  146 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-~g~L~  146 (391)
                      .-.+++++++|+.+.++..|+.|..|+..  .......                    .....+...+++|.+. +++++
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~--------------------l~gH~~~V~~v~~s~~~~g~~l   70 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDT--------------------LTGHEGPVWRVDWAHPKFGTIL   70 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEE--------------------ECCCSSCEEEEEECCGGGCSEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEE--------------------EccccCCeEEEEecCCCcCCEE
Confidence            34578999999999999999999988754  1111111                    1111344567888642 25555


Q ss_pred             EEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCC--CCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          147 IADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       147 V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~--G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      ++... ..|..+|..+++.+.+... .+ .....+.+++.++  |.+.++.+.                 ++.+..||..
T Consensus        71 ~s~s~D~~v~iWd~~~~~~~~~~~~-~~-h~~~v~~v~~~p~~~g~~l~s~s~-----------------d~~v~~wd~~  131 (297)
T 2pm7_B           71 ASCSYDGKVMIWKEENGRWSQIAVH-AV-HSASVNSVQWAPHEYGPMLLVASS-----------------DGKVSVVEFK  131 (297)
T ss_dssp             EEEETTTEEEEEEBSSSCBCCCEEE-CC-CSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEEBC
T ss_pred             EEEcCCCEEEEEEcCCCceEEEEEe-ec-CCCceeEEEeCcCCCCcEEEEEEC-----------------CCcEEEEEec
Confidence            54444 4477788877643222111 11 1124678888886  776666533                 5678888876


Q ss_pred             CCe---EEEeccCCCCcceEEEccC-------------CCEEEEEeCCCCeEEEEEeccccCccceeecccCC---CCCc
Q 016318          224 TKQ---TTVLLRNLQFPNGLSLSKD-------------KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG---YPDN  284 (391)
Q Consensus       224 ~~~---~~~~~~~~~~~ngia~~~d-------------~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g---~p~~  284 (391)
                      ++.   ...+.......+.++++|+             ++.+ ++-...+.|..+++.... ........+.+   ....
T Consensus       132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l-~sgs~D~~v~lwd~~~~~-~~~~~~~~l~~H~~~V~~  209 (297)
T 2pm7_B          132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF-VTGGADNLVKIWKYNSDA-QTYVLESTLEGHSDWVRD  209 (297)
T ss_dssp             SSSCBCCEEEECCSSCEEEEEECCCC------------CCEE-EEEETTSCEEEEEEETTT-TEEEEEEEECCCSSCEEE
T ss_pred             CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceE-EEEcCCCcEEEEEEcCCC-ceEEEEEEecCCCCceEE
Confidence            542   2222222334567888886             4544 444556677777765321 11111122333   3456


Q ss_pred             eEeCCCC---CEEEEEcCCCchhh
Q 016318          285 VRTNEKG---EFWVAIHCRRSLYS  305 (391)
Q Consensus       285 i~~d~~G---~lwva~~~~~~~~~  305 (391)
                      +++++++   ++.++....+.+.+
T Consensus       210 v~~sp~~~~~~~las~s~D~~v~i  233 (297)
T 2pm7_B          210 VAWSPTVLLRSYMASVSQDRTCII  233 (297)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEE
T ss_pred             EEECCCCCCceEEEEEECCCcEEE
Confidence            7888875   55555444444443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.24  E-value=0.00094  Score=60.19  Aligned_cols=180  Identities=14%  Similarity=0.050  Sum_probs=105.8

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCce---eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKW---TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ...+++++++|+.++++..+|.|..|+....   ..+.                    ...........+.++  ++.|+
T Consensus        61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~--------------------~~~~~~~~i~~~~~~--~~~l~  118 (313)
T 3odt_A           61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY--------------------TLIGHQGNVCSLSFQ--DGVVI  118 (313)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C--------------------EECCCSSCEEEEEEE--TTEEE
T ss_pred             cEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc--------------------chhhcccCEEEEEec--CCEEE
Confidence            4568899999999999999999888865410   1110                    111113445677774  45666


Q ss_pred             EEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       147 V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      ++.....|..+| .......+. ..    ......++..+ +++..++.+.                 +|.+..||.. .
T Consensus       119 ~~~~d~~i~~~d-~~~~~~~~~-~~----~~~v~~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~-~  174 (313)
T 3odt_A          119 SGSWDKTAKVWK-EGSLVYNLQ-AH----NASVWDAKVVSFSENKFLTASA-----------------DKTIKLWQND-K  174 (313)
T ss_dssp             EEETTSEEEEEE-TTEEEEEEE-CC----SSCEEEEEEEETTTTEEEEEET-----------------TSCEEEEETT-E
T ss_pred             EEeCCCCEEEEc-CCcEEEecc-cC----CCceeEEEEccCCCCEEEEEEC-----------------CCCEEEEecC-c
Confidence            666555588888 222222221 11    12355666665 6666665533                 5788888833 2


Q ss_pred             eEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcC
Q 016318          226 QTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       226 ~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      ....+.. .......+++++++. ++.+ ...+.|..+++...  .....+....+....++++++|.++.+...
T Consensus       175 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d  245 (313)
T 3odt_A          175 VIKTFSGIHNDVVRHLAVVDDGH-FISC-SNDGLIKLVDMHTG--DVLRTYEGHESFVYCIKLLPNGDIVSCGED  245 (313)
T ss_dssp             EEEEECSSCSSCEEEEEEEETTE-EEEE-ETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECTTSCEEEEETT
T ss_pred             eEEEEeccCcccEEEEEEcCCCe-EEEc-cCCCeEEEEECCch--hhhhhhhcCCceEEEEEEecCCCEEEEecC
Confidence            3333333 344667899999998 5544 55678888886532  112222222344567889999976655443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.23  E-value=0.00091  Score=62.20  Aligned_cols=155  Identities=9%  Similarity=0.038  Sum_probs=94.7

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      .-.+++++++|+.+.+++.|+.|..|+..  ........                    ....+...++++++ ++++++
T Consensus        63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~--------------------~~h~~~v~~v~~sp-~~~~l~  121 (345)
T 3fm0_A           63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL--------------------EGHENEVKSVAWAP-SGNLLA  121 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE--------------------CCCSSCEEEEEECT-TSSEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc--------------------cCCCCCceEEEEeC-CCCEEE
Confidence            45689999999999999999998888654  22222211                    11134567899998 565544


Q ss_pred             -EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          148 -ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       148 -~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                       +.....|..+|..++..........+ .......+++.++|++.++.+.                 ++.+..||..+++
T Consensus       122 s~s~D~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~-----------------d~~i~~w~~~~~~  183 (345)
T 3fm0_A          122 TCSRDKSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHPSQELLASASY-----------------DDTVKLYREEEDD  183 (345)
T ss_dssp             EEETTSCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECSSSSCEEEEET-----------------TSCEEEEEEETTE
T ss_pred             EEECCCeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECCCCCEEEEEeC-----------------CCcEEEEEecCCC
Confidence             44445577777765432111111111 1124677889999987666533                 4677778776665


Q ss_pred             EE---EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318          227 TT---VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  264 (391)
Q Consensus       227 ~~---~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~  264 (391)
                      ..   .+.......+.++++|++++|..+ ...+.|..++.
T Consensus       184 ~~~~~~~~~h~~~v~~l~~sp~g~~l~s~-s~D~~v~iW~~  223 (345)
T 3fm0_A          184 WVCCATLEGHESTVWSLAFDPSGQRLASC-SDDRTVRIWRQ  223 (345)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEEE
T ss_pred             EEEEEEecCCCCceEEEEECCCCCEEEEE-eCCCeEEEecc
Confidence            32   233333456789999999966555 44555555543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.21  E-value=0.00013  Score=74.13  Aligned_cols=157  Identities=11%  Similarity=-0.054  Sum_probs=96.4

Q ss_pred             CcceEEEccCCCeeEEEecC----------CEEEEEeCCc------eeEEEeecCCCcccCCCCCCcccccccc-CccCc
Q 016318           70 GPESMAFDPLGRGPYTGVAD----------GRILFWDGLK------WTDFAFTSNNRSELCNPKPIATSYLKNE-HICGR  132 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~----------g~I~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~  132 (391)
                      ...++++++||+.+++...+          ..|+.++.+.      -...                     ... .....
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~  189 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR---------------------ELSDDAHRF  189 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE---------------------ESSCSCSSE
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee---------------------EEEecCCCc
Confidence            35678899999978777665          4677776542      1100                     000 11233


Q ss_pred             cceEEEecCCCcEEEEECC--------CCeEEEeCC-CC---eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCccc
Q 016318          133 PLGLRFDKKTGDLYIADAY--------FGLMKVGPE-GG---LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQ  200 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~--------~gl~~~d~~-~g---~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~  200 (391)
                      ..++++++++..|+++...        ..|+.+|.+ ++   +.+.+.....    .....++..+||++|++...    
T Consensus       190 ~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~----~~~~~~~~spdg~l~~~~~~----  261 (662)
T 3azo_A          190 VTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE----EAIAQAEWAPDGSLIVATDR----  261 (662)
T ss_dssp             ECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT----BCEEEEEECTTSCEEEEECT----
T ss_pred             ccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC----ceEcceEECCCCeEEEEECC----
Confidence            4567888844446555432        248999988 56   4444433211    24567888999998887643    


Q ss_pred             chhheeeecccCCCceEEEEeCCCCeEEEeccCCC-C--------cceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          201 RRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ-F--------PNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       201 ~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~-~--------~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                                 .+...|+++|.++++.+.+...-. .        ...++++++++.++.+.....+||++++++
T Consensus       262 -----------~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  325 (662)
T 3azo_A          262 -----------TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPES  325 (662)
T ss_dssp             -----------TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTT
T ss_pred             -----------CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCC
Confidence                       122379999998888777653211 1        346888899996655543345788887654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.21  E-value=0.00068  Score=61.82  Aligned_cols=190  Identities=7%  Similarity=-0.081  Sum_probs=110.8

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE-EEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY-IAD  149 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~-V~d  149 (391)
                      -.++++.++|+.+++++.|+.|..|+...........                    ...+....+++++ ++.++ .+.
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~~~-~~~~l~sgs  116 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--------------------AHPDYIRSIAVHP-TKPYVLSGS  116 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSSCEEEEEECS-SSSEEEEEE
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe--------------------CCCCcEEEEEEcC-CCCEEEEEC
Confidence            3577888999999999999999999876222221111                    1134467889998 55544 444


Q ss_pred             CCCCeEEEeCCCC-eeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          150 AYFGLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       150 ~~~gl~~~d~~~g-~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ....|..+|..++ .........    ......+++.+ ++.+.++.+.                 ++.+..||..+++.
T Consensus       117 ~D~~v~lWd~~~~~~~~~~~~~h----~~~v~~v~~~p~~~~~l~sgs~-----------------D~~v~iwd~~~~~~  175 (304)
T 2ynn_A          117 DDLTVKLWNWENNWALEQTFEGH----EHFVMCVAFNPKDPSTFASGCL-----------------DRTVKVWSLGQSTP  175 (304)
T ss_dssp             TTSCEEEEEGGGTTEEEEEECCC----CSCEEEEEECTTCTTEEEEEET-----------------TSEEEEEETTCSSC
T ss_pred             CCCeEEEEECCCCcchhhhhccc----CCcEEEEEECCCCCCEEEEEeC-----------------CCeEEEEECCCCCc
Confidence            4455888887765 222221111    13467889988 5677666543                 57888898765532


Q ss_pred             E-Eecc-CCCCcceEEEcc--CCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCch
Q 016318          228 T-VLLR-NLQFPNGLSLSK--DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       228 ~-~~~~-~~~~~ngia~~~--d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~  303 (391)
                      . .+.. .....+.+++.+  +++++. +-...+.|..+++...+  ....+....+....+++++++.+.++....+.+
T Consensus       176 ~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~s~D~~i~iWd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i  252 (304)
T 2ynn_A          176 NFTLTTGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL  252 (304)
T ss_dssp             SEEEECCCTTCEEEEEECCSTTCCEEE-EEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred             cceeccCCcCcEEEEEEEEcCCCCEEE-EEcCCCeEEEEeCCCCc--cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeE
Confidence            2 2221 123345566665  667554 44566788888765321  111221111223457788888877665555444


Q ss_pred             hh
Q 016318          304 YS  305 (391)
Q Consensus       304 ~~  305 (391)
                      .+
T Consensus       253 ~i  254 (304)
T 2ynn_A          253 KI  254 (304)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.20  E-value=0.00051  Score=63.80  Aligned_cols=155  Identities=12%  Similarity=0.016  Sum_probs=89.4

Q ss_pred             CccceEEEecCCCc-EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCC--CCEEEEeCCCcccchhheee
Q 016318          131 GRPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       131 g~P~gi~~d~~~g~-L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~--G~ly~td~~~~~~~~~~~~~  207 (391)
                      +....+++++ +++ |.++.....|..++..++..+.+... .+ .......+++.++  +++.++.+.           
T Consensus        12 ~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~~~l~s~~~-----------   77 (379)
T 3jrp_A           12 ELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTL-TG-HEGPVWRVDWAHPKFGTILASCSY-----------   77 (379)
T ss_dssp             CCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEEET-----------
T ss_pred             ccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEe-cC-CCCcEEEEEeCCCCCCCEEEEecc-----------
Confidence            4567889998 555 44454444477777664433332211 11 1124577888765  777776543           


Q ss_pred             ecccCCCceEEEEeCCCCeEE---EeccCCCCcceEEEccC--CCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC
Q 016318          208 VFSAEDTGRVLKYDPTTKQTT---VLLRNLQFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP  282 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~---~~~~~~~~~ngia~~~d--~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p  282 (391)
                            +|.|..||..+++..   .+.........++++|+  ++.++++ +..+.|..+++..........+.......
T Consensus        78 ------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~v  150 (379)
T 3jrp_A           78 ------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA-SSDGKVSVVEFKENGTTSPIIIDAHAIGV  150 (379)
T ss_dssp             ------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-ETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred             ------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEe-cCCCcEEEEecCCCCceeeEEecCCCCce
Confidence                  578888888877532   22233346778999999  8866655 55778888887653221222222222233


Q ss_pred             CceEeCC-------------CCCEEEEEcCCCchhhh
Q 016318          283 DNVRTNE-------------KGEFWVAIHCRRSLYSH  306 (391)
Q Consensus       283 ~~i~~d~-------------~G~lwva~~~~~~~~~~  306 (391)
                      ..++.++             ++.+.++......+..+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  187 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW  187 (379)
T ss_dssp             EEEEECCCC----------CTTCEEEEEETTSCEEEE
T ss_pred             EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEE
Confidence            4566776             57766655554444443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.19  E-value=0.0031  Score=60.67  Aligned_cols=181  Identities=13%  Similarity=0.005  Sum_probs=105.1

Q ss_pred             cCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEE
Q 016318           78 PLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKV  157 (391)
Q Consensus        78 ~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~  157 (391)
                      .+++.+++++.||.|..|+....+......                    ...+....+++.+ ++.|..+.....|..+
T Consensus       130 ~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~--------------------~h~~~V~~l~~~~-~~~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          130 FEDNYVITGADDKMIRVYDSINKKFLLQLS--------------------GHDGGVWALKYAH-GGILVSGSTDRTVRVW  188 (464)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEECS-TTEEEEEETTSCEEEE
T ss_pred             ECCCEEEEEcCCCcEEEEECCCCcEEEEEe--------------------CCCcCEEEEEEcC-CCEEEEEeCCCCEEEE
Confidence            356779999999999999876323222211                    1134567888887 5666666655669999


Q ss_pred             eCCCCeeEEceeccCCCcccCCcceeec--CCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE-------
Q 016318          158 GPEGGLATSLATEAEGVPLRFTNDLDID--DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT-------  228 (391)
Q Consensus       158 d~~~g~~~~~~~~~~~~~~~~~~~l~~d--~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-------  228 (391)
                      |.++++........    ......+++.  +++++.++.+.                 +|.+..||..+++..       
T Consensus       189 d~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~  247 (464)
T 3v7d_B          189 DIKKGCCTHVFEGH----NSTVRCLDIVEYKNIKYIVTGSR-----------------DNTLHVWKLPKESSVPDHGEEH  247 (464)
T ss_dssp             ETTTTEEEEEECCC----SSCEEEEEEEESSSCEEEEEEET-----------------TSCEEEEECCCCCCC------C
T ss_pred             ECCCCcEEEEECCC----CCccEEEEEecCCCCCEEEEEcC-----------------CCcEEEeeCCCCcccccccccC
Confidence            99887644322211    1234556665  46665555432                 467777877655421       


Q ss_pred             -----------------EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCC
Q 016318          229 -----------------VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG  291 (391)
Q Consensus       229 -----------------~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G  291 (391)
                                       .+..  ....-.+++++++.++.+ ...+.|..+++...  .....+....+....++++++|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~-~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~  322 (464)
T 3v7d_B          248 DYPLVFHTPEENPYFVGVLRG--HMASVRTVSGHGNIVVSG-SYDNTLIVWDVAQM--KCLYILSGHTDRIYSTIYDHER  322 (464)
T ss_dssp             CSSEEESCGGGCTTEEEEECC--CSSCEEEEEEETTEEEEE-ETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEETTT
T ss_pred             CcceEeeccCCCeEEEEEccC--ccceEEEEcCCCCEEEEE-eCCCeEEEEECCCC--cEEEEecCCCCCEEEEEEcCCC
Confidence                             1111  112223567888866665 55678888886532  1112222222334567888999


Q ss_pred             CEEEEEcCCCchhh
Q 016318          292 EFWVAIHCRRSLYS  305 (391)
Q Consensus       292 ~lwva~~~~~~~~~  305 (391)
                      +..++......+..
T Consensus       323 ~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          323 KRCISASMDTTIRI  336 (464)
T ss_dssp             TEEEEEETTSCEEE
T ss_pred             CEEEEEeCCCcEEE
Confidence            87666555544444

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.19  E-value=0.0009  Score=60.34  Aligned_cols=183  Identities=9%  Similarity=-0.031  Sum_probs=100.7

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~V  147 (391)
                      ..-.++++ ++++.+++++.+|.|..|+...........                    ...+....+++++ +++ |++
T Consensus        19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~~l~~   76 (313)
T 3odt_A           19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY--------------------TGQGFLNSVCYDS-EKELLLF   76 (313)
T ss_dssp             SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE--------------------ECSSCEEEEEEET-TTTEEEE
T ss_pred             CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee--------------------cCCccEEEEEECC-CCCEEEE
Confidence            34567888 888889999999999999866211111110                    0134567889998 555 555


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      +.....+..++..............+ .......++.  ++++.++.+.                 +|.+..|| .....
T Consensus        77 ~~~dg~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~l~~~~~-----------------d~~i~~~d-~~~~~  135 (313)
T 3odt_A           77 GGKDTMINGVPLFATSGEDPLYTLIG-HQGNVCSLSF--QDGVVISGSW-----------------DKTAKVWK-EGSLV  135 (313)
T ss_dssp             EETTSCEEEEETTCCTTSCC-CEECC-CSSCEEEEEE--ETTEEEEEET-----------------TSEEEEEE-TTEEE
T ss_pred             ecCCCeEEEEEeeecCCCCcccchhh-cccCEEEEEe--cCCEEEEEeC-----------------CCCEEEEc-CCcEE
Confidence            54444466676543311000000111 1123455666  4455554432                 57888888 22333


Q ss_pred             EEeccCCCCcceEEEcc-CCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcC
Q 016318          228 TVLLRNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       228 ~~~~~~~~~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      ..+.........+++.+ +++.++.+ ...+.|..++..    .....+.. ..+....++.+++|.+.++...
T Consensus       136 ~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~i~d~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d  204 (313)
T 3odt_A          136 YNLQAHNASVWDAKVVSFSENKFLTA-SADKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDDGHFISCSND  204 (313)
T ss_dssp             EEEECCSSCEEEEEEEETTTTEEEEE-ETTSCEEEEETT----EEEEEECSSCSSCEEEEEEEETTEEEEEETT
T ss_pred             EecccCCCceeEEEEccCCCCEEEEE-ECCCCEEEEecC----ceEEEEeccCcccEEEEEEcCCCeEEEccCC
Confidence            33333344566788877 88866655 556778877621    11222222 3334566888888885554433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.19  E-value=0.00025  Score=65.51  Aligned_cols=101  Identities=12%  Similarity=0.140  Sum_probs=62.8

Q ss_pred             cCcceEEEccC---CCeeEEEecCCEEEEEeCCc-eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           69 QGPESMAFDPL---GRGPYTGVADGRILFWDGLK-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        69 ~gPe~i~~d~~---G~~ly~~~~~g~I~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ..-.+++++++   |+.++++..+|.|..|+... -......                   .....+....+++++ +++
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~-~~~   99 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA-------------------QQMHTGPVLDVCWSD-DGS   99 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEE-------------------EEECSSCEEEEEECT-TSS
T ss_pred             CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEE-------------------eccccCCEEEEEECc-CCC
Confidence            45678999998   68899999999999987651 1111000                   001134567899998 555


Q ss_pred             -EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceee--cCCCCEEEEe
Q 016318          145 -LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI--DDEGNVYFTD  194 (391)
Q Consensus       145 -L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~--d~~G~ly~td  194 (391)
                       |+.+.....|..+|..+++...+... .    .....+++  .++|++.++.
T Consensus       100 ~l~s~~~dg~v~iwd~~~~~~~~~~~~-~----~~v~~~~~~~~~~~~~l~~~  147 (368)
T 3mmy_A          100 KVFTASCDKTAKMWDLSSNQAIQIAQH-D----APVKTIHWIKAPNYSCVMTG  147 (368)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEC-S----SCEEEEEEEECSSCEEEEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCceeeccc-c----CceEEEEEEeCCCCCEEEEc
Confidence             55555444488899988876554322 1    23556666  6676655543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.16  E-value=0.00065  Score=69.61  Aligned_cols=194  Identities=9%  Similarity=0.020  Sum_probs=117.8

Q ss_pred             CcceEEEccC-CCeeEEEecCCEEEEEeCCc----eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           70 GPESMAFDPL-GRGPYTGVADGRILFWDGLK----WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        70 gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      .-.+|++.++ ++++.+++.|+.|..|+...    ......                   ......+...++++++ +++
T Consensus       384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~-------------------~~~~h~~~v~~v~~s~-~g~  443 (694)
T 3dm0_A          384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQR-------------------RLTGHSHFVEDVVLSS-DGQ  443 (694)
T ss_dssp             CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEE-------------------EEECCSSCEEEEEECT-TSS
T ss_pred             eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccc-------------------eecCCCCcEEEEEECC-CCC
Confidence            3457777765 46788999999999997641    000000                   0111234467889998 566


Q ss_pred             EEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 LYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      ++++... ..|..+|..+++.........    .....+++.++|+..++.+.                 ++.|..||..
T Consensus       444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~s~-----------------D~~i~iwd~~  502 (694)
T 3dm0_A          444 FALSGSWDGELRLWDLAAGVSTRRFVGHT----KDVLSVAFSLDNRQIVSASR-----------------DRTIKLWNTL  502 (694)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCS----SCEEEEEECTTSSCEEEEET-----------------TSCEEEECTT
T ss_pred             EEEEEeCCCcEEEEECCCCcceeEEeCCC----CCEEEEEEeCCCCEEEEEeC-----------------CCEEEEEECC
Confidence            5554444 448888988875443222211    24678899999987776543                 5788888876


Q ss_pred             CCeEEEeccC----CCCcceEEEccCCC-EEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEc
Q 016318          224 TKQTTVLLRN----LQFPNGLSLSKDKS-FFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       224 ~~~~~~~~~~----~~~~ngia~~~d~~-~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~  298 (391)
                      +.....+...    ....+.++++|++. ..+++-+..+.|..+++...+  ....+....+....++++++|++.++..
T Consensus       503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~--~~~~~~~h~~~v~~v~~spdg~~l~sg~  580 (694)
T 3dm0_A          503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVSPDGSLCASGG  580 (694)
T ss_dssp             SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence            5544444322    12356889999862 244554666788888765421  1122222234456788999999877766


Q ss_pred             CCCchhhh
Q 016318          299 CRRSLYSH  306 (391)
Q Consensus       299 ~~~~~~~~  306 (391)
                      ..+.+.++
T Consensus       581 ~Dg~i~iw  588 (694)
T 3dm0_A          581 KDGVVLLW  588 (694)
T ss_dssp             TTSBCEEE
T ss_pred             CCCeEEEE
Confidence            65555444

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.14  E-value=0.00012  Score=69.32  Aligned_cols=208  Identities=10%  Similarity=0.097  Sum_probs=120.0

Q ss_pred             CcceEEEccC-CCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           70 GPESMAFDPL-GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ...++++.++ ++.++++..+|.|..|+.......   ... ......       .......+...++++++++++++++
T Consensus       115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---~~~-~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~l~~  183 (416)
T 2pm9_A          115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES---PSN-YTPLTP-------GQSMSSVDEVISLAWNQSLAHVFAS  183 (416)
T ss_dssp             CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSC---TTT-CCCBCC-------CCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred             ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccc---ccc-cccccc-------ccccCCCCCeeEEEeCCCCCcEEEE
Confidence            4568899998 888899999999999977521100   000 000000       0011123556789999843666665


Q ss_pred             ECCCC-eEEEeCCCCeeEEceeccCC--CcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          149 DAYFG-LMKVGPEGGLATSLATEAEG--VPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       149 d~~~g-l~~~d~~~g~~~~~~~~~~~--~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      ....| |..+|..+++..........  .....+..+++.++| +++++.+..              ...+.|..||..+
T Consensus       184 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------~~~~~i~~~d~~~  249 (416)
T 2pm9_A          184 AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS--------------DNDPSILIWDLRN  249 (416)
T ss_dssp             ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC--------------SSSCCCCEEETTS
T ss_pred             EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECC--------------CCCceEEEEeCCC
Confidence            45444 89999988754332221100  002357889999987 566665320              0112788888876


Q ss_pred             C-eE-EEec-cCCCCcceEEEcc-CCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCC-CEEEEEcC
Q 016318          225 K-QT-TVLL-RNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG-EFWVAIHC  299 (391)
Q Consensus       225 ~-~~-~~~~-~~~~~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G-~lwva~~~  299 (391)
                      + +. ..+. ........++++| +++.++.+ ...+.|..+++...  .....+....+....++++++| .++++...
T Consensus       250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~-~~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~  326 (416)
T 2pm9_A          250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS-GRDNTVLLWNPESA--EQLSQFPARGNWCFKTKFAPEAPDLFACASF  326 (416)
T ss_dssp             TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE-ESSSEEEEECSSSC--CEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred             CCCCcEEeecCccCceeEEEeCCCCCCeEEEE-eCCCCEEEeeCCCC--ccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence            5 22 2222 2334567899999 88855555 55678888876532  1122232233456788999998 67766555


Q ss_pred             CCchhh
Q 016318          300 RRSLYS  305 (391)
Q Consensus       300 ~~~~~~  305 (391)
                      ...+.+
T Consensus       327 d~~i~i  332 (416)
T 2pm9_A          327 DNKIEV  332 (416)
T ss_dssp             SSEEEE
T ss_pred             CCcEEE
Confidence            444433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.13  E-value=0.00059  Score=74.59  Aligned_cols=208  Identities=12%  Similarity=0.095  Sum_probs=123.4

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCc--------ee-E--EEeec---------C-CCcccCCCCCCcccccccc
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLK--------WT-D--FAFTS---------N-NRSELCNPKPIATSYLKNE  127 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~--------~~-~--~~~~~---------~-~~~~~~~~~~~~~~~~~~~  127 (391)
                      ....++++.++|+.+++++.+|.|..|+...        .. .  .....         . ..........   .. ...
T Consensus       883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~  958 (1249)
T 3sfz_A          883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT---GQ-IDY  958 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESS---CC-EEE
T ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCc---ce-EEE
Confidence            3567899999999899999999999987430        00 0  00000         0 0000000000   00 000


Q ss_pred             CccCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheee
Q 016318          128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       128 ~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~  207 (391)
                      ........+++++++..+.+++....|..++..+++........    ......++++++|+..++.+.           
T Consensus       959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~s~~~----------- 1023 (1249)
T 3sfz_A          959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH----KKAVRHIQFTADGKTLISSSE----------- 1023 (1249)
T ss_dssp             ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCC----SSCCCCEEECSSSSCEEEECS-----------
T ss_pred             cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccC----CCceEEEEECCCCCEEEEEcC-----------
Confidence            01234567889884444556655556888998876543321111    235778999999987777643           


Q ss_pred             ecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEe
Q 016318          208 VFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  287 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~  287 (391)
                            +|.+..||..+++.............+++++++. ++.+ +..+.|..+++...+  ....+....+....+++
T Consensus      1024 ------dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~-~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~ 1093 (1249)
T 3sfz_A         1024 ------DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-LLSW-SFDGTVKVWNVITGR--IERDFTCHQGTVLSCAI 1093 (1249)
T ss_dssp             ------SSBEEEEETTTTEEECCBCCSSCEEEEEECSSSE-EEEE-ESSSEEEEEETTTTC--CCEEEECCSSCCCCEEE
T ss_pred             ------CCEEEEEECCCCceEEEecCCCcEEEEEEcCCCc-EEEE-ECCCcEEEEECCCCc--eeEEEcccCCcEEEEEE
Confidence                  5789999999888765554445667889999886 4444 456788888865421  12233323345678899


Q ss_pred             CCCCCEEEEEcCCCchhh
Q 016318          288 NEKGEFWVAIHCRRSLYS  305 (391)
Q Consensus       288 d~~G~lwva~~~~~~~~~  305 (391)
                      +++|++.++......+..
T Consensus      1094 s~d~~~l~s~s~d~~v~i 1111 (1249)
T 3sfz_A         1094 SSDATKFSSTSADKTAKI 1111 (1249)
T ss_dssp             CSSSSSCEEECCSSCCCE
T ss_pred             CCCCCEEEEEcCCCcEEE
Confidence            999986665555444433

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.13  E-value=0.00066  Score=62.53  Aligned_cols=193  Identities=12%  Similarity=-0.010  Sum_probs=107.5

Q ss_pred             cCcceEEEccCCCeeE-EEec---CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-
Q 016318           69 QGPESMAFDPLGRGPY-TGVA---DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-  141 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly-~~~~---~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-  141 (391)
                      ....++++.++|..+. +++.   +|.|..|+..  ........                     ........++++++ 
T Consensus        19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~---------------------~~~~~v~~~~~~~~~   77 (357)
T 3i2n_A           19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI---------------------EKAKPIKCGTFGATS   77 (357)
T ss_dssp             SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE---------------------EESSCEEEEECTTCC
T ss_pred             CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee---------------------cccCcEEEEEEcCCC
Confidence            3567899999986444 4554   8888888765  22212111                     01234567888874 


Q ss_pred             --CCcEEEEECCCCeEEEeCCCCe--eEEceeccCCC--cccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318          142 --TGDLYIADAYFGLMKVGPEGGL--ATSLATEAEGV--PLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       142 --~g~L~V~d~~~gl~~~d~~~g~--~~~~~~~~~~~--~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                        +..|+++.....|..+|..+++  +..+... .+.  .+.+..++++.++|+..++.+.                 +|
T Consensus        78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~~~~~-----------------d~  139 (357)
T 3i2n_A           78 LQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGH-KEIINAIDGIGGLGIGEGAPEIVTGSR-----------------DG  139 (357)
T ss_dssp             TTTCCEEEEETTSCEEEECTTSCSSCSEEECCC-SSCEEEEEEESGGGCC-CCCEEEEEET-----------------TS
T ss_pred             CCCceEEEecCCCeEEEEeCCCCCccEEEEEec-ccceEEEeeccccccCCCccEEEEEeC-----------------CC
Confidence              2446666555568888988764  2222211 110  0112222356778877666533                 57


Q ss_pred             eEEEEeCCCCe--EEEeccCC----CCcceEE----EccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCce
Q 016318          216 RVLKYDPTTKQ--TTVLLRNL----QFPNGLS----LSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV  285 (391)
Q Consensus       216 ~l~~~d~~~~~--~~~~~~~~----~~~ngia----~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i  285 (391)
                      .+..||..+++  ...+....    .....++    ++++++.++.+ ...+.|..+++...   +........+....+
T Consensus       140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~---~~~~~~~~~~~v~~~  215 (357)
T 3i2n_A          140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG-YDNGDIKLFDLRNM---ALRWETNIKNGVCSL  215 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE-ETTSEEEEEETTTT---EEEEEEECSSCEEEE
T ss_pred             eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE-ccCCeEEEEECccC---ceeeecCCCCceEEE
Confidence            88899987765  33332111    1334555    67899966655 55678999887643   222222233445678


Q ss_pred             EeCC---CCCEEEEEcCCCchh
Q 016318          286 RTNE---KGEFWVAIHCRRSLY  304 (391)
Q Consensus       286 ~~d~---~G~lwva~~~~~~~~  304 (391)
                      .+++   +|++.++......+.
T Consensus       216 ~~~~~~~~~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          216 EFDRKDISMNKLVATSLEGKFH  237 (357)
T ss_dssp             EESCSSSSCCEEEEEESTTEEE
T ss_pred             EcCCCCCCCCEEEEECCCCeEE
Confidence            8888   777665554444443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.12  E-value=8.2e-05  Score=74.59  Aligned_cols=173  Identities=15%  Similarity=-0.004  Sum_probs=98.7

Q ss_pred             cceEEEccCCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           71 PESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ..++++.+||+.+.+++. +|.+..|+.+  ....+..                      ........+++++ +..+|.
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~----------------------~~~~~~~~~~~sp-d~~l~~   80 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR----------------------EPINSVLDPHYGV-GRVILV   80 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS----------------------SCCSEECEECTTC-SEEEEE
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec----------------------ccccccccccCCC-CeEEEE
Confidence            457889999997766554 7765555422  2111110                      0012344566776 444566


Q ss_pred             EEC--C-C--CeEEEeC--CCCeeEEceeccCCCcccCCcceeecCCC--CEEEEeCCCcccchhheeeecccCCCceEE
Q 016318          148 ADA--Y-F--GLMKVGP--EGGLATSLATEAEGVPLRFTNDLDIDDEG--NVYFTDSSTNYQRRNFMQLVFSAEDTGRVL  218 (391)
Q Consensus       148 ~d~--~-~--gl~~~d~--~~g~~~~~~~~~~~~~~~~~~~l~~d~~G--~ly~td~~~~~~~~~~~~~~~~~~~~g~l~  218 (391)
                      ++.  . .  .|+.++.  +++.. .+.. ..     .....++.++|  .+|++...                  +.+.
T Consensus        81 ~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~-----~~~~~~~s~dg~~~~~~s~~~------------------~~~~  135 (582)
T 3o4h_A           81 RDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VK-----PMRILSGVDTGEAVVFTGATE------------------DRVA  135 (582)
T ss_dssp             EECSTTSCCEEEEEEETTSTTCCE-ECTT-SC-----SBEEEEEEECSSCEEEEEECS------------------SCEE
T ss_pred             eccCCCCcceEEEEEeccCCCccc-cccC-CC-----CceeeeeCCCCCeEEEEecCC------------------CCce
Confidence            664  1 1  3777887  55433 3221 11     12234555555  34544422                  4455


Q ss_pred             EEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC---CCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEE
Q 016318          219 KYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS---VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWV  295 (391)
Q Consensus       219 ~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~---~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwv  295 (391)
                      .||.++++.+.+.....  +.++++|||++|+.+...   ...|+++++++   ++.+.+...++...++++++||+..+
T Consensus       136 l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~---g~~~~l~~~~~~~~~~~~SpDG~~l~  210 (582)
T 3o4h_A          136 LYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS---GGLRVFDSGEGSFSSASISPGMKVTA  210 (582)
T ss_dssp             EEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT---CCCEEECCSSCEEEEEEECTTSCEEE
T ss_pred             EEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC---CCceEeecCCCccccceECCCCCEEE
Confidence            77888888777654333  789999999987755322   14688888765   33344433334456788999998555


Q ss_pred             E
Q 016318          296 A  296 (391)
Q Consensus       296 a  296 (391)
                      +
T Consensus       211 ~  211 (582)
T 3o4h_A          211 G  211 (582)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.12  E-value=0.00053  Score=64.73  Aligned_cols=156  Identities=15%  Similarity=0.113  Sum_probs=101.1

Q ss_pred             ceEEEcc-CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           72 ESMAFDP-LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        72 e~i~~d~-~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .++++.+ +++.+.+++.|+.|..|+.. ....+..                    .....+....+++++ +++++++.
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~--------------------~~~h~~~v~~v~~~p-~~~~l~s~  267 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT--------------------YHGHEGDINSVKFFP-DGQRFGTG  267 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE--------------------ECCCSSCCCEEEECT-TSSEEEEE
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE--------------------ECCcCCCeEEEEEec-CCCeEEEE
Confidence            3556655 78888999999999999864 1111110                    111134567899998 66665554


Q ss_pred             CCC-CeEEEeCCCCeeEEceeccC---CCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          150 AYF-GLMKVGPEGGLATSLATEAE---GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       150 ~~~-gl~~~d~~~g~~~~~~~~~~---~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      ... .|..+|..+++.........   .........+++.++|.+.++.+.                 +|.+..||..++
T Consensus       268 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----------------dg~i~vwd~~~~  330 (380)
T 3iz6_a          268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-----------------NGDCYVWDTLLA  330 (380)
T ss_dssp             CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----------------TSCEEEEETTTC
T ss_pred             cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-----------------CCCEEEEECCCC
Confidence            444 48889998875443222111   112235678999999998887654                 588999998877


Q ss_pred             eEEEecc-----CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          226 QTTVLLR-----NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       226 ~~~~~~~-----~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      +......     .....+.++++||+++|. +-...+.|..+++.+
T Consensus       331 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          331 EMVLNLGTLQNSHEGRISCLGLSSDGSALC-TGSWDKNLKIWAFSG  375 (380)
T ss_dssp             CEEEEECCSCSSCCCCCCEEEECSSSSEEE-EECTTSCEEEEECCS
T ss_pred             ceEEEEecccCCCCCceEEEEECCCCCEEE-EeeCCCCEEEEecCC
Confidence            6543321     223567899999999554 446667777777665

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.09  E-value=0.00041  Score=72.01  Aligned_cols=195  Identities=12%  Similarity=0.061  Sum_probs=117.5

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-CCcE-
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGDL-  145 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-~g~L-  145 (391)
                      .-.+++++++|+.++++..+|.|..|+..  .........                    ...+...+++++++ ++++ 
T Consensus        11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~--------------------~h~~~V~~l~~s~~~~~~~l   70 (753)
T 3jro_A           11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT--------------------GHEGPVWRVDWAHPKFGTIL   70 (753)
T ss_dssp             CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC--------------------CCSSCEEEEEECCTTSCSEE
T ss_pred             eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc--------------------CCcCceEEEEecCCCCCCEE
Confidence            45678899999989999999999998754  222222111                    11344678888763 1554 


Q ss_pred             EEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCC--CCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       146 ~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~--G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      ..+...+.|..+|..+++.........  ....+..+++.++  |++.++.+.                 +|.+..||..
T Consensus        71 ~s~s~Dg~I~vwd~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sgs~-----------------dg~I~vwdl~  131 (753)
T 3jro_A           71 ASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASS-----------------DGKVSVVEFK  131 (753)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEECC
T ss_pred             EEEeCCCeEEEEECCCCcccccccccC--CCCCeEEEEECCCCCCCEEEEEeC-----------------CCcEEEEEee
Confidence            445444458888888775433322111  1235678889888  877776643                 5788889887


Q ss_pred             CCe---EEEeccCCCCcceEEEcc-------------CCCEEEEEeCCCCeEEEEEeccccCccceeecc---cCCCCCc
Q 016318          224 TKQ---TTVLLRNLQFPNGLSLSK-------------DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LPGYPDN  284 (391)
Q Consensus       224 ~~~---~~~~~~~~~~~ngia~~~-------------d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~---~~g~p~~  284 (391)
                      ++.   ...+.........++++|             |++.++.+ ...+.|..+++..... .......   ..+....
T Consensus       132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg-s~dg~I~iwd~~~~~~-~~~~~~~~~~h~~~V~~  209 (753)
T 3jro_A          132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRD  209 (753)
T ss_dssp             SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE-ETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEE
T ss_pred             cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE-ECCCeEEEEeccCCcc-cceeeeeecCCCCcEEE
Confidence            652   222323334567888888             57756555 5567788887764321 1111112   2234466


Q ss_pred             eEeCCC---CCEEEEEcCCCchhh
Q 016318          285 VRTNEK---GEFWVAIHCRRSLYS  305 (391)
Q Consensus       285 i~~d~~---G~lwva~~~~~~~~~  305 (391)
                      ++++++   |++.++......+..
T Consensus       210 l~~sp~~~~~~~l~s~s~Dg~I~i  233 (753)
T 3jro_A          210 VAWSPTVLLRSYLASVSQDRTCII  233 (753)
T ss_dssp             EEECCCCSSSEEEEEEESSSCEEE
T ss_pred             EEeccCCCCCCEEEEEecCCEEEE
Confidence            888888   776666555444433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.08  E-value=0.0011  Score=71.30  Aligned_cols=148  Identities=16%  Similarity=0.148  Sum_probs=92.8

Q ss_pred             cceEEEccCCCeeEEEecCCEEE-EEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRIL-FWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ..++++. +|+.+++.+.+++++ .++..  ....+                       ......+..+++++++..|++
T Consensus       340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-----------------------~~~~~~~~~~~~SpDG~~la~  395 (1045)
T 1k32_A          340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-----------------------EENLGNVFAMGVDRNGKFAVV  395 (1045)
T ss_dssp             EEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-----------------------CCCCCSEEEEEECTTSSEEEE
T ss_pred             EEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-----------------------cCCccceeeeEECCCCCEEEE
Confidence            3355666 776666666666777 66654  11111                       011345678899994444666


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCc-ccchhheeeecccCCCceEEEEeCCCCe
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTN-YQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~-~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      +.....|+.+|.++++.+.+.....    .....+++++||+..+..+... +.        ......+.|+.+|.++++
T Consensus       396 ~~~~~~v~~~d~~tg~~~~~~~~~~----~~v~~~~~SpDG~~la~~~~~~~~~--------~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          396 ANDRFEIMTVDLETGKPTVIERSRE----AMITDFTISDNSRFIAYGFPLKHGE--------TDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSS----SCCCCEEECTTSCEEEEEEEECSST--------TCSCCEEEEEEEETTTTE
T ss_pred             ECCCCeEEEEECCCCceEEeccCCC----CCccceEECCCCCeEEEEecCcccc--------ccCCCCCeEEEEECCCCc
Confidence            6555569999999988776643222    2357889999997444332100 00        001123579999999988


Q ss_pred             EEEeccCCCCcceEEEccCCCEEEEEeC
Q 016318          227 TTVLLRNLQFPNGLSLSKDKSFFVFCEG  254 (391)
Q Consensus       227 ~~~~~~~~~~~ngia~~~d~~~l~v~et  254 (391)
                      ...+.........++++|||+.|+++..
T Consensus       464 ~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          464 IFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence            7776665566778999999998887754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.07  E-value=0.00027  Score=66.43  Aligned_cols=164  Identities=14%  Similarity=0.081  Sum_probs=102.6

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE-EE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L-~V  147 (391)
                      ....++++.++| .++++..+|.|..|+......+......     .         ..+........+++++ ++++ ++
T Consensus       187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~---------~h~~~~~~i~~i~~~~-~~~~l~~  250 (397)
T 1sq9_A          187 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ-----H---------SMINNSNSIRSVKFSP-QGSLLAI  250 (397)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC-----C------------CCCCCEEEEEECS-STTEEEE
T ss_pred             CCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc-----c---------cccccCCccceEEECC-CCCEEEE
Confidence            357789999999 8999999999999987632222211100     0         0000024467889998 5554 44


Q ss_pred             EECC---CCeEEEeCCCCeeEEceec-cC-C-------CcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318          148 ADAY---FGLMKVGPEGGLATSLATE-AE-G-------VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       148 ~d~~---~gl~~~d~~~g~~~~~~~~-~~-~-------~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      +...   ..|..+|..+++....... .. .       .....+..+++.++|++.++.+.                 +|
T Consensus       251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------dg  313 (397)
T 1sq9_A          251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-----------------DG  313 (397)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-----------------TS
T ss_pred             EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC-----------------CC
Confidence            4443   3488889877653322111 00 0       01235678899999987776543                 57


Q ss_pred             eEEEEeCCCCeEEEecc------C----------------CCCcceEEEccCC----------CEEEEEeCCCCeEEEEE
Q 016318          216 RVLKYDPTTKQTTVLLR------N----------------LQFPNGLSLSKDK----------SFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~~------~----------------~~~~ngia~~~d~----------~~l~v~et~~~~I~~~~  263 (391)
                      .|..||..+++......      .                ....+.++++|++          +.++.+ ...+.|..++
T Consensus       314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~-~~dg~i~iw~  392 (397)
T 1sq9_A          314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV-CLDRSIRWFR  392 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEE-ETTTEEEEEE
T ss_pred             eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEe-cCCCcEEEEE
Confidence            89999998876544433      2                3456789999998          545444 5567888877


Q ss_pred             ecc
Q 016318          264 LIG  266 (391)
Q Consensus       264 ~~g  266 (391)
                      +++
T Consensus       393 ~~~  395 (397)
T 1sq9_A          393 EAG  395 (397)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.07  E-value=0.0065  Score=55.35  Aligned_cols=187  Identities=12%  Similarity=0.041  Sum_probs=108.7

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ....++++.++|+.++++..|+.|..++...........                    ........+.+.+.+..|+.+
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~s~  146 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--------------------GHTKDVLSVAFSSDNRQIVSG  146 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------CCSSCEEEEEECTTSSCEEEE
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec--------------------CCCCceeEEEEeecCccceee
Confidence            356788999999999999999999998877222211111                    012233445566633445555


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCC--CCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~--G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      .....+..+|..+.........  + .......+++.++  ..+.++.+.                 ++.+..||..+++
T Consensus       147 s~d~~~~~~d~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~s~~~-----------------d~~i~i~d~~~~~  206 (340)
T 4aow_A          147 SRDKTIKLWNTLGVCKYTVQDE--S-HSEWVSCVRFSPNSSNPIIVSCGW-----------------DKLVKVWNLANCK  206 (340)
T ss_dssp             ETTSCEEEECTTSCEEEEECSS--S-CSSCEEEEEECSCSSSCEEEEEET-----------------TSCEEEEETTTTE
T ss_pred             cCCCeEEEEEeCCCceEEEEec--c-ccCcccceEEccCCCCcEEEEEcC-----------------CCEEEEEECCCCc
Confidence            5555577778765543322111  1 1123455566554  345555432                 4678889988887


Q ss_pred             EEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcC
Q 016318          227 TTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       227 ~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      ......+ -...+.++++||++.++.+ ...+.|..+++...+  ....+ ........+...+++.+.++...
T Consensus       207 ~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~Dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~~~~~d  276 (340)
T 4aow_A          207 LKTNHIGHTGYLNTVTVSPDGSLCASG-GKDGQAMLWDLNEGK--HLYTL-DGGDIINALCFSPNRYWLCAATG  276 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEE-ETTCEEEEEETTTTE--EEEEE-ECSSCEEEEEECSSSSEEEEEET
T ss_pred             eeeEecCCCCcEEEEEECCCCCEEEEE-eCCCeEEEEEeccCc--eeeee-cCCceEEeeecCCCCceeeccCC
Confidence            6554433 3356789999999966555 556788888765321  11111 11223345677787776665443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.06  E-value=0.00067  Score=62.26  Aligned_cols=194  Identities=13%  Similarity=-0.011  Sum_probs=105.5

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-CCc-E
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGD-L  145 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-~g~-L  145 (391)
                      .-.+++++++|+.+.+++.|+.|..|+..  ........                    ....+....+++.+. +++ |
T Consensus        15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l--------------------~gH~~~V~~v~~~~~~~~~~l   74 (316)
T 3bg1_A           15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL--------------------RGHEGPVWQVAWAHPMYGNIL   74 (316)
T ss_dssp             CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE--------------------ECCSSCEEEEEECCGGGSSCE
T ss_pred             eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE--------------------cCCCccEEEEEeCCCCCCCEE
Confidence            34578999999999999999999888754  11111111                    011244667888642 244 5


Q ss_pred             EEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCC--CCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       146 ~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~--G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      ..+.....|..+|..+++.+..... .+ .....+.+++.++  |.+.++.+.                 ++.+..||..
T Consensus        75 ~s~s~D~~v~iWd~~~~~~~~~~~~-~~-h~~~V~~v~~~p~~~g~~lasgs~-----------------D~~i~lwd~~  135 (316)
T 3bg1_A           75 ASCSYDRKVIIWREENGTWEKSHEH-AG-HDSSVNSVCWAPHDYGLILACGSS-----------------DGAISLLTYT  135 (316)
T ss_dssp             EEEETTSCEEEECCSSSCCCEEEEE-CC-CSSCCCEEEECCTTTCSCEEEECS-----------------SSCEEEEEEC
T ss_pred             EEEECCCEEEEEECCCCcceEEEEc-cC-CCCceEEEEECCCCCCcEEEEEcC-----------------CCCEEEEecC
Confidence            5555455588888887643222111 11 1135788899886  666666543                 4677777766


Q ss_pred             CCe-EEEe--c-cCCCCcceEEEccC-----------------CCEEEEEeCCCCeEEEEEeccccCccceeecccCC--
Q 016318          224 TKQ-TTVL--L-RNLQFPNGLSLSKD-----------------KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG--  280 (391)
Q Consensus       224 ~~~-~~~~--~-~~~~~~ngia~~~d-----------------~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g--  280 (391)
                      ++. ....  . ......+.++++|+                 ++ .+++-...+.|..+++...  +..+....+.+  
T Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~--~~~~~~~~l~~h~  212 (316)
T 3bg1_A          136 GEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEED--GQWKEEQKLEAHS  212 (316)
T ss_dssp             SSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTT--SCEEEEECCBCCS
T ss_pred             CCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCC--CccceeeecccCC
Confidence            542 2211  1 11123456777776                 24 3444344556666665432  11112222222  


Q ss_pred             -CCCceEeCCCC----CEEEEEcCCCchhh
Q 016318          281 -YPDNVRTNEKG----EFWVAIHCRRSLYS  305 (391)
Q Consensus       281 -~p~~i~~d~~G----~lwva~~~~~~~~~  305 (391)
                       ....+++++++    ++.++......+.+
T Consensus       213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             SCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             CceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence             34557777775    55555444444433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.06  E-value=0.0014  Score=65.22  Aligned_cols=188  Identities=12%  Similarity=0.123  Sum_probs=114.1

Q ss_pred             cceEEEcc--CCCeeEEEecCCEEEEEeCC-c-------eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEec
Q 016318           71 PESMAFDP--LGRGPYTGVADGRILFWDGL-K-------WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (391)
Q Consensus        71 Pe~i~~d~--~G~~ly~~~~~g~I~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~  140 (391)
                      ..++++.+  +|+.++++..+|.|..|+.. .       .......                    ....+....+++++
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~--------------------~~~~~~v~~~~~s~  126 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF--------------------QVLAGPISDISWDF  126 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE--------------------ECCSSCEEEEEECT
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh--------------------hcccccEEEEEEeC
Confidence            57899999  99999999999999988763 1       1111111                    11134567899998


Q ss_pred             CCCcEEEEECCC----CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCc
Q 016318          141 KTGDLYIADAYF----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       141 ~~g~L~V~d~~~----gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      ++..|.++....    .|+.+| .+..+..+..     .......+++.++|. +.++.+.                 ++
T Consensus       127 ~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~-----------------d~  183 (615)
T 1pgu_A          127 EGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSG-----HSQRINACHLKQSRPMRSMTVGD-----------------DG  183 (615)
T ss_dssp             TSSEEEEEECCSSCSEEEEETT-TCCEEEECCS-----CSSCEEEEEECSSSSCEEEEEET-----------------TT
T ss_pred             CCCEEEEeccCCCCccEEEEEE-CCCcceeeec-----CCccEEEEEECCCCCcEEEEEeC-----------------CC
Confidence            433455554332    366666 2233333321     123567889999986 5555432                 57


Q ss_pred             eEEEEeCCCCeEEEeccC-CC---CcceEEEccC-CCEEEEEeCCCCeEEEEEeccccCccceee-c---ccCCCCCceE
Q 016318          216 RVLKYDPTTKQTTVLLRN-LQ---FPNGLSLSKD-KSFFVFCEGSVGRLHKYWLIGEKAGNLEAF-A---ILPGYPDNVR  286 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~~~-~~---~~ngia~~~d-~~~l~v~et~~~~I~~~~~~g~~~g~~~~~-~---~~~g~p~~i~  286 (391)
                      .+..||..+++....... ..   ..+.++++|+ ++.++.+ +..+.|..+++...+  ....+ .   ...+....+.
T Consensus       184 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~~~~  260 (615)
T 1pgu_A          184 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV-GSDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALS  260 (615)
T ss_dssp             EEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE-ETTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEE
T ss_pred             cEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE-eCCCeEEEEECCCCC--EeEEecccccccCCceEEEE
Confidence            899999888766544433 23   4678999999 9866655 456788888865321  11222 1   1223345678


Q ss_pred             eCCCCCEEEEEcCCCchhh
Q 016318          287 TNEKGEFWVAIHCRRSLYS  305 (391)
Q Consensus       287 ~d~~G~lwva~~~~~~~~~  305 (391)
                      ++ +|+++++......+..
T Consensus       261 ~~-~~~~l~~~~~d~~i~~  278 (615)
T 1pgu_A          261 WL-DSQKFATVGADATIRV  278 (615)
T ss_dssp             ES-SSSEEEEEETTSEEEE
T ss_pred             Ec-CCCEEEEEcCCCcEEE
Confidence            88 8886666555444433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.06  E-value=0.00087  Score=68.04  Aligned_cols=152  Identities=13%  Similarity=0.011  Sum_probs=89.2

Q ss_pred             cCCCc-EEEEEC-CCCeEEEeCC--C-CeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCC
Q 016318          140 KKTGD-LYIADA-YFGLMKVGPE--G-GLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       140 ~~~g~-L~V~d~-~~gl~~~d~~--~-g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      ++++. |+++.. ...|+.++.+  + +..+.+.............++++++||+ |+++..... .       ......
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~-~-------~~~~~~  159 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT-G-------EGPSDV  159 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC-S-------SSTTCE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc-C-------CCCCCc
Confidence            64455 555543 3459999987  5 6666554321100112456789999996 554431100 0       000012


Q ss_pred             CceEEEEeCCC------CeEEEec-cCCCCcceEEEccCCCEEEEEeCCC-------CeEEEEEecc-ccCccceeecc-
Q 016318          214 TGRVLKYDPTT------KQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV-------GRLHKYWLIG-EKAGNLEAFAI-  277 (391)
Q Consensus       214 ~g~l~~~d~~~------~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~-------~~I~~~~~~g-~~~g~~~~~~~-  277 (391)
                      ...|+.+|.++      ++.+.+. ........++++|||++|+++....       ..|+.+++++ .+.++...+.. 
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~  239 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG  239 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence            25799999988      7777776 5555667889999999887765332       4799999873 21113333322 


Q ss_pred             cCCCCCceEeCCCCCEEEEEcC
Q 016318          278 LPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       278 ~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      ..+.+..++.+++|++++....
T Consensus       240 ~~~~~~~~~~spdg~l~~~~~~  261 (662)
T 3azo_A          240 PEEAIAQAEWAPDGSLIVATDR  261 (662)
T ss_dssp             TTBCEEEEEECTTSCEEEEECT
T ss_pred             CCceEcceEECCCCeEEEEECC
Confidence            1234556788889986655443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.04  E-value=0.0077  Score=55.42  Aligned_cols=191  Identities=11%  Similarity=-0.022  Sum_probs=101.6

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE-E
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI-A  148 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V-~  148 (391)
                      .+++++++  ++.++..|+.|..|+..  .........                  .....+....+++++ ++++++ +
T Consensus        18 ~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~------------------~~~h~~~v~~v~~sp-~~~~las~   76 (330)
T 2hes_X           18 WSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD------------------ETAHKKAIRSVAWRP-HTSLLAAG   76 (330)
T ss_dssp             EEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC------------------TTCCCSCEEEEEECT-TSSEEEEE
T ss_pred             eeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe------------------cCCccCCEEEEEECC-CCCEEEEE
Confidence            46677665  68999999999998765  122221110                  000124467899998 566554 4


Q ss_pred             ECCCCeEEEeCCCCe-----eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          149 DAYFGLMKVGPEGGL-----ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       149 d~~~gl~~~d~~~g~-----~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      .....|..++..+..     .+.+. ...+ .......+++.++|++.++.+.                 ++.+..||..
T Consensus        77 s~D~~v~iw~~~~~~~~~~~~~~~~-~~~~-h~~~V~~v~~sp~g~~las~s~-----------------D~~v~iwd~~  137 (330)
T 2hes_X           77 SFDSTVSIWAKEESADRTFEMDLLA-IIEG-HENEVKGVAWSNDGYYLATCSR-----------------DKSVWIWETD  137 (330)
T ss_dssp             ETTSCEEEEEC-------CCCEEEE-EEC-----CEEEEEECTTSCEEEEEET-----------------TSCEEEEECC
T ss_pred             eCCCcEEEEEcccCcCccccceeEE-EEcC-CCCcEEEEEECCCCCEEEEEeC-----------------CCEEEEEecc
Confidence            434447777764321     11111 1111 1134678999999987777643                 5778888873


Q ss_pred             -CC---e-EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCC--CCEEEE
Q 016318          224 -TK---Q-TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK--GEFWVA  296 (391)
Q Consensus       224 -~~---~-~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~--G~lwva  296 (391)
                       .+   + ...+.......+.++++|+++.|..+ ...+.|..++...........+....+....+.++++  +...++
T Consensus       138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~-s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  216 (330)
T 2hes_X          138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASS-SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS  216 (330)
T ss_dssp             TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE-ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred             CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE
Confidence             22   2 22333333456789999999955444 5556666665432110111122212223345667776  544444


Q ss_pred             EcCCCch
Q 016318          297 IHCRRSL  303 (391)
Q Consensus       297 ~~~~~~~  303 (391)
                      ......+
T Consensus       217 ~s~D~~v  223 (330)
T 2hes_X          217 GSDDSTV  223 (330)
T ss_dssp             EETTSCE
T ss_pred             EeCCCeE
Confidence            4444343

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.03  E-value=0.0027  Score=58.77  Aligned_cols=192  Identities=9%  Similarity=-0.008  Sum_probs=108.9

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEec--CCCcEEEEE
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK--KTGDLYIAD  149 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~--~~g~L~V~d  149 (391)
                      .++.+.++   +.+++.|+.|..|+.+.-..........  ..       ..... ...+....+++++  ++..+..+.
T Consensus        80 ~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~--~~-------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s  146 (343)
T 3lrv_A           80 RTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNK--VL-------REIEV-DSANEIIYMYGHNEVNTEYFIWAD  146 (343)
T ss_dssp             CTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCC--EE-------EEEEC-CCSSCEEEEECCC---CCEEEEEE
T ss_pred             eeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcc--ee-------EEeec-CCCCCEEEEEcCCCCCCCEEEEEe
Confidence            34444444   7778888888888766211111110000  00       00000 0123466788876  444455465


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE-
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT-  228 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-  228 (391)
                      ....|..+|..+++........   .......+++.++|.+.++.+.                 +|.|..||..+++.. 
T Consensus       147 ~dg~i~~wd~~~~~~~~~~~~~---~~~~i~~~~~~pdg~~lasg~~-----------------dg~i~iwd~~~~~~~~  206 (343)
T 3lrv_A          147 NRGTIGFQSYEDDSQYIVHSAK---SDVEYSSGVLHKDSLLLALYSP-----------------DGILDVYNLSSPDQAS  206 (343)
T ss_dssp             TTCCEEEEESSSSCEEEEECCC---SSCCCCEEEECTTSCEEEEECT-----------------TSCEEEEESSCTTSCC
T ss_pred             CCCcEEEEECCCCcEEEEEecC---CCCceEEEEECCCCCEEEEEcC-----------------CCEEEEEECCCCCCCc
Confidence            5556889999887653332111   1224788999999998887543                 578999999887654 


Q ss_pred             -Eecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC-ccceeecccCCCC---CceEeCCCCCEEEEEcC
Q 016318          229 -VLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA-GNLEAFAILPGYP---DNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       229 -~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~-g~~~~~~~~~g~p---~~i~~d~~G~lwva~~~  299 (391)
                       .+.. .....+.++++|+++++..+. . +.|..+++...+. ...+.+.. ...+   ..++++++|.+.++...
T Consensus       207 ~~~~~~h~~~v~~l~fs~~g~~l~s~~-~-~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          207 SRFPVDEEAKIKEVKFADNGYWMVVEC-D-QTVVCFDLRKDVGTLAYPTYTI-PEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             EECCCCTTSCEEEEEECTTSSEEEEEE-S-SBEEEEETTSSTTCBSSCCCBC------CCEEEEECTTSSEEEEEET
T ss_pred             cEEeccCCCCEEEEEEeCCCCEEEEEe-C-CeEEEEEcCCCCcceeeccccc-ccccccceEEEECCCCCEEEEecC
Confidence             3333 245667999999999776665 3 3888888764321 11111110 1122   23899999997766433

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.03  E-value=0.00075  Score=61.73  Aligned_cols=191  Identities=14%  Similarity=0.167  Sum_probs=112.9

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC-CcEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT-GDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~-g~L~V~  148 (391)
                      ....+.+.++++.++++..|+.+..++...........                   .........+++..+. +.++++
T Consensus       130 ~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~-------------------~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-------------------ESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-------------------SSCSSCEEEEEECSCSSSCEEEE
T ss_pred             ceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe-------------------ccccCcccceEEccCCCCcEEEE
Confidence            44556667788878888999988888765222211110                   0012334456665532 334444


Q ss_pred             ECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          149 DAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       149 d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ... ..|..+|..+++........    ....+.++++++|++.++.+.                 +|.+..||..+++.
T Consensus       191 ~~~d~~i~i~d~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~s~-----------------Dg~i~iwd~~~~~~  249 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLKTNHIGH----TGYLNTVTVSPDGSLCASGGK-----------------DGQAMLWDLNEGKH  249 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEET-----------------TCEEEEEETTTTEE
T ss_pred             EcCCCEEEEEECCCCceeeEecCC----CCcEEEEEECCCCCEEEEEeC-----------------CCeEEEEEeccCce
Confidence            333 44888888877654332221    124678999999988777643                 57899999988876


Q ss_pred             EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC-ccc--eee-cc---cCCCCCceEeCCCCCEEEEEcCC
Q 016318          228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA-GNL--EAF-AI---LPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~-g~~--~~~-~~---~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      ......-...+.++++|++.++..+  ..+.|..+++.+... ...  +.. ..   .++....++++++|++.++....
T Consensus       250 ~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  327 (340)
T 4aow_A          250 LYTLDGGDIINALCFSPNRYWLCAA--TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD  327 (340)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEE--ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred             eeeecCCceEEeeecCCCCceeecc--CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence            5555555567788999998844433  356788887664311 000  000 01   11223457889999977765544


Q ss_pred             Cc
Q 016318          301 RS  302 (391)
Q Consensus       301 ~~  302 (391)
                      ..
T Consensus       328 g~  329 (340)
T 4aow_A          328 NL  329 (340)
T ss_dssp             SC
T ss_pred             CE
Confidence            33

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.01  E-value=0.0015  Score=64.99  Aligned_cols=183  Identities=9%  Similarity=0.040  Sum_probs=110.8

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ....++++.|+|..+-+++.+|.+..|+.+.  .+.... ..              ... .....+.++|++++..|+++
T Consensus        86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~--------------~~~-~~~sv~svafSPDG~~LAsg  147 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SK--------------GNL-SSRTYHCFEWNPIESSIVVG  147 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CS--------------SCS-TTTCEEEEEECSSSSCEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CC--------------Ccc-ccccEEEEEEcCCCCEEEEE
Confidence            3567899999999899999999999998653  111111 00              000 01235689999955567777


Q ss_pred             ECCCCeEEEeCCCCee--------EEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          149 DAYFGLMKVGPEGGLA--------TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~--------~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      ...+.|..+|.+++..        +.+.....+ .......++..++| + ++.++                 ++.+..|
T Consensus       148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg-L-aass~-----------------D~tVrlW  207 (588)
T 2j04_A          148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAG-SKDWVTHIVWYEDV-L-VAALS-----------------NNSVFSM  207 (588)
T ss_dssp             ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT-CCCCEEEEEEETTE-E-EEEET-----------------TCCEEEE
T ss_pred             cCCCEEEEEECCCCccccccceeeeeeeccccc-ccccEEEEEEcCCc-E-EEEeC-----------------CCeEEEE
Confidence            6666688889887742        333211222 23578899999999 4 44332                 4678888


Q ss_pred             eCCCCeE----EEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCceEe--CCCCC
Q 016318          221 DPTTKQT----TVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRT--NEKGE  292 (391)
Q Consensus       221 d~~~~~~----~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~~--d~~G~  292 (391)
                      |..+++.    ..+.. .-.....++++  ++.+..+ . .+.|..+++.+.   +...+. ...+...+|++  +++|.
T Consensus       208 d~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa-~-~~tIkLWd~~~~---~~~~~~~gh~~~V~~va~~~s~d~~  280 (588)
T 2j04_A          208 TVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLT-C-PGYVHKIDLKNY---SISSLKTGSLENFHIIPLNHEKEST  280 (588)
T ss_dssp             CCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEE-C-SSEEEEEETTTT---EEEEEECSCCSCCCEEEETTCSSCE
T ss_pred             ECCCCccccceeeecccccCcEEEEEEE--CCEEEEE-e-CCeEEEEECCCC---eEEEEEcCCCceEEEEEeeeCCCCC
Confidence            8877663    22322 22457789998  4645544 3 478999987753   222222 22233445666  66665


Q ss_pred             EEEE
Q 016318          293 FWVA  296 (391)
Q Consensus       293 lwva  296 (391)
                      ..+.
T Consensus       281 ~La~  284 (588)
T 2j04_A          281 ILLM  284 (588)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.00  E-value=0.0013  Score=62.80  Aligned_cols=165  Identities=9%  Similarity=0.058  Sum_probs=98.4

Q ss_pred             ccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC-cE
Q 016318           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DL  145 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g-~L  145 (391)
                      -....++++.++|+.+.++ .|+.|..|+.. .-..+......      +       ............+++++ ++ ++
T Consensus       177 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~------~-------~~~~~~~~~v~~~~~~p-~~~~~  241 (447)
T 3dw8_B          177 TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK------P-------ANMEELTEVITAAEFHP-NSCNT  241 (447)
T ss_dssp             SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC------C-------SSGGGCCCCEEEEEECS-SCTTE
T ss_pred             CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc------c-------ccccccCcceEEEEECC-CCCcE
Confidence            3456789999999977777 89999999887 22222111000      0       01111235577899998 44 55


Q ss_pred             EE-EECCCCeEEEeCCCCee-----EEceeccCCCc-------ccCCcceeecCCCCEEEEeCCCcccchhheeeecccC
Q 016318          146 YI-ADAYFGLMKVGPEGGLA-----TSLATEAEGVP-------LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       146 ~V-~d~~~gl~~~d~~~g~~-----~~~~~~~~~~~-------~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      ++ +.....|..+|..+++.     ..+........       ......+++.++|++.++.+                 
T Consensus       242 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------------  304 (447)
T 3dw8_B          242 FVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----------------  304 (447)
T ss_dssp             EEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----------------
T ss_pred             EEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----------------
Confidence            44 44444588899887653     33321111000       01567899999998777652                 


Q ss_pred             CCceEEEEeCCC-CeEEEeccCCCC----------------cceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          213 DTGRVLKYDPTT-KQTTVLLRNLQF----------------PNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       213 ~~g~l~~~d~~~-~~~~~~~~~~~~----------------~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                       .+.+..||..+ ++..........                ...++++||+++| ++-...+.|..+++..
T Consensus       305 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          305 -YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             -SSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTT
T ss_pred             -CCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEE-EEeccCCEEEEEEcCC
Confidence             16788888865 432111111111                1238999999966 4546778898888764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.00  E-value=0.00015  Score=78.17  Aligned_cols=180  Identities=13%  Similarity=0.051  Sum_probs=112.9

Q ss_pred             CcceEEEc-cCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccC-ccceEEEecCCCcEEE
Q 016318           70 GPESMAFD-PLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICG-RPLGLRFDKKTGDLYI  147 (391)
Q Consensus        70 gPe~i~~d-~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~P~gi~~d~~~g~L~V  147 (391)
                      ...+++++ ++|+.+.++. ++.|+.++...-.... ..                    ...+ .+..++++ ++..|+.
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~--------------------~~~~~~~~~~~~s-dg~~l~~  353 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP--------------------EPLRIRYVRRGGD-TKVAFIH  353 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS--------------------CCSCEEEEEECSS-SEEEEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc--------------------CCCcceEEeeeEc-CCCeEEE
Confidence            47789999 9998665555 7788888765211111 00                    0112 44566666 4455666


Q ss_pred             EECCCCeE-EEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          148 ADAYFGLM-KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       148 ~d~~~gl~-~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      +.....++ .++..+++.+.+. ..    ...+..+++++||+..++.+.                 .+.++.+|.++++
T Consensus       354 ~s~~~~l~~~~d~~~~~~~~l~-~~----~~~~~~~~~SpDG~~la~~~~-----------------~~~v~~~d~~tg~  411 (1045)
T 1k32_A          354 GTREGDFLGIYDYRTGKAEKFE-EN----LGNVFAMGVDRNGKFAVVAND-----------------RFEIMTVDLETGK  411 (1045)
T ss_dssp             EETTEEEEEEEETTTCCEEECC-CC----CCSEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCC
T ss_pred             EECCCceEEEEECCCCCceEec-CC----ccceeeeEECCCCCEEEEECC-----------------CCeEEEEECCCCc
Confidence            55545688 8898888766654 11    135678899999975544322                 3689999999998


Q ss_pred             EEEeccCC-CCcceEEEccCCCEEEEEeCCC---------CeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEE
Q 016318          227 TTVLLRNL-QFPNGLSLSKDKSFFVFCEGSV---------GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWV  295 (391)
Q Consensus       227 ~~~~~~~~-~~~ngia~~~d~~~l~v~et~~---------~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwv  295 (391)
                      ...+.... .....++++|||++|.++....         ..|+.+++++.   +...+.........++++++|+ ++.
T Consensus       412 ~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---~~~~l~~~~~~~~~~~~spdG~~l~~  488 (1045)
T 1k32_A          412 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---KIFAATTENSHDYAPAFDADSKNLYY  488 (1045)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---EEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC---cEEEeeCCCcccCCceEcCCCCEEEE
Confidence            87776333 3447899999999876664322         47888887652   2222222112234578899998 444


Q ss_pred             EE
Q 016318          296 AI  297 (391)
Q Consensus       296 a~  297 (391)
                      +.
T Consensus       489 ~s  490 (1045)
T 1k32_A          489 LS  490 (1045)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.00  E-value=0.00046  Score=64.28  Aligned_cols=135  Identities=17%  Similarity=0.252  Sum_probs=83.6

Q ss_pred             CCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCC----C----CEEEEeCCCcccchhheeeecccC
Q 016318          142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE----G----NVYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       142 ~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~----G----~ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      ...++++... .||+.+|.++..+..+..       ..+|++++-++    |    -+|+++..               .
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~---------------~   96 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRS---------------E   96 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECS---------------T
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCC---------------C
Confidence            3456666554 569999997766655421       24677666542    1    23444421               0


Q ss_pred             CCceE--EEEeCCCCeEEEec-------cCCCCcceEEE--ccC-CC-EEEEEeCCCCeEEEEEeccccCc--cceeec-
Q 016318          213 DTGRV--LKYDPTTKQTTVLL-------RNLQFPNGLSL--SKD-KS-FFVFCEGSVGRLHKYWLIGEKAG--NLEAFA-  276 (391)
Q Consensus       213 ~~g~l--~~~d~~~~~~~~~~-------~~~~~~ngia~--~~d-~~-~l~v~et~~~~I~~~~~~g~~~g--~~~~~~-  276 (391)
                      ++++|  +..|+++++++.+.       ..+..|.|+|+  +++ ++ ++|+++. .+++..|.+.....+  +.+... 
T Consensus        97 ~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-~G~~~q~~l~~~~~g~~~~~lVR~  175 (355)
T 3amr_A           97 GKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-EGEFEQYELKADKNGYISGKKVRA  175 (355)
T ss_dssp             TCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-SSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-CCeEEEEEEEeCCCCcccceEEEE
Confidence            03444  55588888877763       33478999999  774 43 5777754 478888877533223  223333 


Q ss_pred             -ccCCCCCceEeCC-CCCEEEEEcC
Q 016318          277 -ILPGYPDNVRTNE-KGEFWVAIHC  299 (391)
Q Consensus       277 -~~~g~p~~i~~d~-~G~lwva~~~  299 (391)
                       .+++.|.++..|+ .|.+|++...
T Consensus       176 f~lgsq~EgcvvDd~~g~Lyv~eEd  200 (355)
T 3amr_A          176 FKMNSQTEGMAADDEYGRLYIAEED  200 (355)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETT
T ss_pred             ecCCCCcceEEEcCCCCeEEEeccc
Confidence             3567888999985 6779999765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.99  E-value=0.00068  Score=69.50  Aligned_cols=202  Identities=7%  Similarity=-0.036  Sum_probs=107.2

Q ss_pred             CcceEEEccCCCeeEEEecC---------CEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318           70 GPESMAFDPLGRGPYTGVAD---------GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~---------g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~  138 (391)
                      +..+++++|||+.+.++..+         +.|+.++..  ....+...                    ......+..+++
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~--------------------~~~~~~~~~~~~  121 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP--------------------EVSNAKLQYAGW  121 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT--------------------TCCSCCCSBCCB
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCC--------------------ccccccccccEE
Confidence            47889999999977776653         677777765  22111100                    001123456778


Q ss_pred             ecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCc--------------ccCCcceeecCCCC-EEEEeCC-Cc---c
Q 016318          139 DKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVP--------------LRFTNDLDIDDEGN-VYFTDSS-TN---Y  199 (391)
Q Consensus       139 d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~--------------~~~~~~l~~d~~G~-ly~td~~-~~---~  199 (391)
                      ++++..|..+. ...|+.+|.++++...+........              +....+++.++||+ |+++... ..   +
T Consensus       122 SPdG~~la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~  200 (723)
T 1xfd_A          122 GPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM  200 (723)
T ss_dssp             CSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred             CCCCCEEEEEE-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceE
Confidence            88433454443 3569999998887665543211100              11236789999996 4444311 00   0


Q ss_pred             cchh-------heeee-c----ccCCCceEEEEeCCCCeE-EEeccC------CCCcceEEEccCCCEEEEEe-CC--CC
Q 016318          200 QRRN-------FMQLV-F----SAEDTGRVLKYDPTTKQT-TVLLRN------LQFPNGLSLSKDKSFFVFCE-GS--VG  257 (391)
Q Consensus       200 ~~~~-------~~~~~-~----~~~~~g~l~~~d~~~~~~-~~~~~~------~~~~ngia~~~d~~~l~v~e-t~--~~  257 (391)
                      ....       ....+ +    +......|+.+|.++++. ..+...      ......++++|||+.+++.. ..  ..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  280 (723)
T 1xfd_A          201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVS  280 (723)
T ss_dssp             EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEE
T ss_pred             EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeE
Confidence            0000       00000 0    011234789999988874 444322      12345689999999664442 21  24


Q ss_pred             eEEEEEeccccCcccee-ecc-cCCC----CCceEeCCCCC-EEE
Q 016318          258 RLHKYWLIGEKAGNLEA-FAI-LPGY----PDNVRTNEKGE-FWV  295 (391)
Q Consensus       258 ~I~~~~~~g~~~g~~~~-~~~-~~g~----p~~i~~d~~G~-lwv  295 (391)
                      .|+.+++++.   +... +.. ..+.    +..++++++|+ +++
T Consensus       281 ~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  322 (723)
T 1xfd_A          281 ILTLCDATTG---VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF  322 (723)
T ss_dssp             EEEEEETTTC---CEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred             EEEEEeCCCC---cceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence            5777776542   2222 211 1222    24788999998 444

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.98  E-value=0.00038  Score=66.30  Aligned_cols=179  Identities=12%  Similarity=0.072  Sum_probs=101.0

Q ss_pred             EccCCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEec-CCCcEEEEEC
Q 016318           76 FDPLGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK-KTGDLYIADA  150 (391)
Q Consensus        76 ~d~~G~~ly~~~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~-~~g~L~V~d~  150 (391)
                      .|.+|. +|+++..| +++++.+    .|..+....                     .......|++|+ +.++||++..
T Consensus        19 ~d~~g~-l~vgt~~G-l~~~~~~~~g~~W~~~~~~~---------------------~~~~v~~i~~dp~~~~~l~~g~~   75 (394)
T 3b7f_A           19 ESGPVM-LLVATIKG-AWFLASDPARRTWELRGPVF---------------------LGHTIHHIVQDPREPERMLMAAR   75 (394)
T ss_dssp             CCSCCE-EEEEETTE-EEEEEECTTSCSEEEEEEES---------------------TTSEEEEEEECSSSTTCEEEEEE
T ss_pred             CCCCCE-EEEEecCc-eEEEECCCCCCCceECCccC---------------------CCCceEEEEECCCCCCeEEEEec
Confidence            455666 99999876 7766532    455432110                     123467888986 3578999976


Q ss_pred             CC----CeEEEeCCCCeeEEceec--cCCC-------cccCCcceeecC---CCCEEEEeCCCcccchhheeeecccCCC
Q 016318          151 YF----GLMKVGPEGGLATSLATE--AEGV-------PLRFTNDLDIDD---EGNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       151 ~~----gl~~~d~~~g~~~~~~~~--~~~~-------~~~~~~~l~~d~---~G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ..    +|++.+..+...+.+...  ....       .......|++++   .+.+|+....                  
T Consensus        76 ~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~------------------  137 (394)
T 3b7f_A           76 TGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSP------------------  137 (394)
T ss_dssp             C--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEET------------------
T ss_pred             CCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecC------------------
Confidence            55    688887665555555322  1111       111234577875   6789997632                  


Q ss_pred             ceEEEEeCCCCeEEEeccC-----------------C--CCcceEEEcc-CCCEEEEEeCCCCeEEEEEeccccCcccee
Q 016318          215 GRVLKYDPTTKQTTVLLRN-----------------L--QFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEA  274 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~-----------------~--~~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g~~~g~~~~  274 (391)
                      ++|++.+..+...+.+...                 .  .....|+++| +.+.+|++.. .+.|++.+-.|.   +.+.
T Consensus       138 ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~DgG~---tW~~  213 (394)
T 3b7f_A          138 QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDAGT---DWKP  213 (394)
T ss_dssp             TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESSTTS---SCEE
T ss_pred             CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCCCC---CceE
Confidence            6899987666565554321                 0  0123678887 3445888743 356877753332   2222


Q ss_pred             ecc------cC------C-CCCceEeCCC--CCEEEEEcC
Q 016318          275 FAI------LP------G-YPDNVRTNEK--GEFWVAIHC  299 (391)
Q Consensus       275 ~~~------~~------g-~p~~i~~d~~--G~lwva~~~  299 (391)
                      +..      +|      + ....|.++++  +.+|++...
T Consensus       214 ~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~  253 (394)
T 3b7f_A          214 LNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC  253 (394)
T ss_dssp             CCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT
T ss_pred             CCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC
Confidence            211      11      0 1235677775  779998654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.96  E-value=0.0016  Score=62.28  Aligned_cols=161  Identities=11%  Similarity=0.121  Sum_probs=94.5

Q ss_pred             cCcceEEEcc-CCCeeEEEecCCEEEEEeCCc---eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           69 QGPESMAFDP-LGRGPYTGVADGRILFWDGLK---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        69 ~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ..-.++++.+ +|+.+.+++.||.|..|+...   -..+         .|.        ... ...+...++++++ +++
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~---------~~~--------~~~-~h~~~v~~~~~~~-~~~  124 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY---------SSS--------LTY-DCSSTVTQITMIP-NFD  124 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC---------SCS--------EEE-ECSSCEEEEEECT-TSS
T ss_pred             CceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc---------cee--------eec-cCCCCEEEEEEeC-CCC
Confidence            4567899999 999899999999999997541   0000         000        000 1235577899998 555


Q ss_pred             -EEEEECCCCeEEEeCC---CCeeEEcee-c----cCCC---cccCCccee--ecCCCCEEEEeCCCcccchhheeeecc
Q 016318          145 -LYIADAYFGLMKVGPE---GGLATSLAT-E----AEGV---PLRFTNDLD--IDDEGNVYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       145 -L~V~d~~~gl~~~d~~---~g~~~~~~~-~----~~~~---~~~~~~~l~--~d~~G~ly~td~~~~~~~~~~~~~~~~  210 (391)
                       |+++.....|..+|.+   +++...... .    ..-.   .......+.  ..+++++.++.+.              
T Consensus       125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------  190 (437)
T 3gre_A          125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN--------------  190 (437)
T ss_dssp             EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET--------------
T ss_pred             EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC--------------
Confidence             4555444446666652   332222111 0    0000   011223333  3456666555433              


Q ss_pred             cCCCceEEEEeCCCCeEEEeccC---CCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          211 AEDTGRVLKYDPTTKQTTVLLRN---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~~~~~---~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                         +|.|..||..+++.......   ....+.++++|+++.++.+ +..+.|..+++..
T Consensus       191 ---d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~  245 (437)
T 3gre_A          191 ---LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILG-TTRGIIDIWDIRF  245 (437)
T ss_dssp             ---TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEE-ETTSCEEEEETTT
T ss_pred             ---CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEE-cCCCeEEEEEcCC
Confidence               57899999988776444332   3467899999999966655 5567788888653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.95  E-value=0.0005  Score=63.09  Aligned_cols=189  Identities=11%  Similarity=-0.018  Sum_probs=111.3

Q ss_pred             cCcceEEEccCCC-eeEEEecCCEEEEEeC-CceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           69 QGPESMAFDPLGR-GPYTGVADGRILFWDG-LKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        69 ~gPe~i~~d~~G~-~ly~~~~~g~I~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ....++++.++|+ .++++..+|.|..|+. ...... ....                  ........++++++ ++.|+
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~------------------~~~~~~v~~l~~~~-~~~l~  116 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ-ALTN------------------NEANLGICRICKYG-DDKLI  116 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-ECBS------------------CCCCSCEEEEEEET-TTEEE
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-eccc------------------cCCCCceEEEEeCC-CCEEE
Confidence            3566889999999 9999999999999987 521111 0000                  00134567889988 56666


Q ss_pred             EEECCCCeEEEeCCC---------CeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceE
Q 016318          147 IADAYFGLMKVGPEG---------GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRV  217 (391)
Q Consensus       147 V~d~~~gl~~~d~~~---------g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l  217 (391)
                      .+.....|..+|..+         ++.  +. ...  ....+..+++.+++ ++++..                  ++.|
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~-~~~--~~~~v~~~~~~~~~-l~~~~~------------------d~~i  172 (342)
T 1yfq_A          117 AASWDGLIEVIDPRNYGDGVIAVKNLN--SN-NTK--VKNKIFTMDTNSSR-LIVGMN------------------NSQV  172 (342)
T ss_dssp             EEETTSEEEEECHHHHTTBCEEEEESC--SS-SSS--SCCCEEEEEECSSE-EEEEES------------------TTEE
T ss_pred             EEcCCCeEEEEcccccccccccccCCe--ee-EEe--eCCceEEEEecCCc-EEEEeC------------------CCeE
Confidence            666555588887654         221  11 111  11346678888777 555543                  4788


Q ss_pred             EEEeCCC-Ce--EEEec-cCCCCcceEEEcc-CCCEEEEEeCCCCeEEEEEeccc--c--CccceeecccC---------
Q 016318          218 LKYDPTT-KQ--TTVLL-RNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGE--K--AGNLEAFAILP---------  279 (391)
Q Consensus       218 ~~~d~~~-~~--~~~~~-~~~~~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g~--~--~g~~~~~~~~~---------  279 (391)
                      ..||..+ ++  ..... ..-.....++++| +++.++++ ...+.|..++++..  .  ......+....         
T Consensus       173 ~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T 1yfq_A          173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS-SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA  251 (342)
T ss_dssp             EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE-ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred             EEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE-ecCCcEEEEEEcCCCcccccccceeeecccccccccccc
Confidence            9999876 43  22222 2234567899999 99966665 45677777666532  1  01112222111         


Q ss_pred             CCCCceEeCCCCCEEEEEcCCCc
Q 016318          280 GYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       280 g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      +....++++++|++.++......
T Consensus       252 ~~i~~~~~s~~~~~l~~~~~dg~  274 (342)
T 1yfq_A          252 YPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSC
T ss_pred             eeEEEEEEcCCCCEEEEecCCce
Confidence            13456788898885555444333

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.95  E-value=0.0051  Score=58.64  Aligned_cols=179  Identities=9%  Similarity=-0.004  Sum_probs=100.9

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~  151 (391)
                      .+|++.++|+.+.+++.||.|..|+....+.+.....                    ...+...+.++  +..|..+...
T Consensus       151 ~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~--------------------h~~~v~~~s~~--~~~l~sgs~d  208 (420)
T 4gga_A          151 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS--------------------HSARVGSLSWN--SYILSSGSRS  208 (420)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--------------------CSSCEEEEEEE--TTEEEEEETT
T ss_pred             EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC--------------------CCCceEEEeeC--CCEEEEEeCC
Confidence            5899999999999999999999998873333322211                    12334455554  2344444444


Q ss_pred             CCeEEEeCCCCee--EEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE--
Q 016318          152 FGLMKVGPEGGLA--TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT--  227 (391)
Q Consensus       152 ~gl~~~d~~~g~~--~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--  227 (391)
                      ..+..+|......  ..+...     ......+...++|+..++...                 ++.+..++..+++.  
T Consensus       209 ~~i~~~d~~~~~~~~~~~~~h-----~~~~~~~~~~~~g~~l~s~~~-----------------D~~v~i~~~~~~~~~~  266 (420)
T 4gga_A          209 GHIHHHDVRVAEHHVATLSGH-----SQEVCGLRWAPDGRHLASGGN-----------------DNLVNVWPSAPGEGGW  266 (420)
T ss_dssp             SEEEEEETTSSSCEEEEEECC-----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESSCCSSCS
T ss_pred             CceeEeeecccceeeEEeccc-----ccceeeeeecCCCCeeeeeec-----------------cccceEEeeccccccc
Confidence            4477777654322  222111     124566778888887766533                 46777788766542  


Q ss_pred             ---EEeccCCCCcceEEEccCCCEEEEEe--CCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEE
Q 016318          228 ---TVLLRNLQFPNGLSLSKDKSFFVFCE--GSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAI  297 (391)
Q Consensus       228 ---~~~~~~~~~~ngia~~~d~~~l~v~e--t~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~  297 (391)
                         ............++++|++..++++.  +..+.|..+++..   ++.............+...++++..++.
T Consensus       267 ~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---~~~~~~~~~~~~v~~~~~~~~~~~lv~~  338 (420)
T 4gga_A          267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACLSAVDAHSQVCSILWSPHYKELISG  338 (420)
T ss_dssp             CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---TEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred             eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---cccceeeccccceeeeeecCCCCeEEEE
Confidence               22222223456788888766555442  3346677776543   2211111122234556677777755544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.95  E-value=0.00062  Score=72.24  Aligned_cols=191  Identities=14%  Similarity=0.036  Sum_probs=119.4

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ....+++++++|+.+.+++.||.|..|+..........                    . .......++|++ +..|..+
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--------------------~-~~~~V~~l~fsp-g~~L~S~   75 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--------------------E-DRSAIKEMRFVK-GIYLVVI   75 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--------------------S-SCCCEEEEEEET-TTEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--------------------C-CCCCEEEEEEcC-CCEEEEE
Confidence            35679999999999999999999999977632222111                    0 123467899998 4446666


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      +..+.|..+|.++++...... ..    .....++++++|+..++.+.                 +|.|..||.++++..
T Consensus        76 s~D~~v~lWd~~~~~~~~~~~-~~----~~V~~v~~sp~g~~l~sgs~-----------------dg~V~lwd~~~~~~~  133 (902)
T 2oaj_A           76 NAKDTVYVLSLYSQKVLTTVF-VP----GKITSIDTDASLDWMLIGLQ-----------------NGSMIVYDIDRDQLS  133 (902)
T ss_dssp             ETTCEEEEEETTTCSEEEEEE-CS----SCEEEEECCTTCSEEEEEET-----------------TSCEEEEETTTTEEE
T ss_pred             ECcCeEEEEECCCCcEEEEEc-CC----CCEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCccc
Confidence            655668889988765332111 11    24678899999976665533                 578999999888754


Q ss_pred             Eec------------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc------------------
Q 016318          229 VLL------------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL------------------  278 (391)
Q Consensus       229 ~~~------------~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~------------------  278 (391)
                      .+.            ......+.++++|++..++++-...+.| .+++...+  ....+...                  
T Consensus       134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~h  210 (902)
T 2oaj_A          134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE--IKQSFIYELPPFAPGGDFSEKTNEKR  210 (902)
T ss_dssp             EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE--EEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred             cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc--eEEEEecccCCcCCCccccccccccc
Confidence            221            1123467899999743244444666777 77765421  11112110                  


Q ss_pred             CCCCCceEeCCCCCEEEEEcCCCchhhh
Q 016318          279 PGYPDNVRTNEKGEFWVAIHCRRSLYSH  306 (391)
Q Consensus       279 ~g~p~~i~~d~~G~lwva~~~~~~~~~~  306 (391)
                      .+....++++++|++.++......+.+|
T Consensus       211 ~~~V~~v~fspdg~~lasgs~Dg~i~lW  238 (902)
T 2oaj_A          211 TPKVIQSLYHPNSLHIITIHEDNSLVFW  238 (902)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             CCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence            0223567889999877776665555444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.94  E-value=0.0032  Score=65.03  Aligned_cols=174  Identities=6%  Similarity=-0.036  Sum_probs=91.1

Q ss_pred             ceEEEccCCCeeEEEecC---------CEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           72 ESMAFDPLGRGPYTGVAD---------GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~---------g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      .+++++|||+.+.+++.+         +.++.++...-...                     ......+.....+++|++
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---------------------~l~~~~~~~~~~~~SPdG  123 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---------------------TEERIPNNTQWVTWSPVG  123 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---------------------CSSCCCTTEEEEEECSST
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---------------------EcccCCCcceeeEECCCC
Confidence            347889999977777665         44556655411100                     000112334567888844


Q ss_pred             CcEEEEECCCCeEEEeCCCCeeEEceeccC------CCc--------ccCCcceeecCCCC-EEEEe--CCCc--ccch-
Q 016318          143 GDLYIADAYFGLMKVGPEGGLATSLATEAE------GVP--------LRFTNDLDIDDEGN-VYFTD--SSTN--YQRR-  202 (391)
Q Consensus       143 g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~------~~~--------~~~~~~l~~d~~G~-ly~td--~~~~--~~~~-  202 (391)
                      ..|..+ ..+.|+.++..+++.+.+.....      |.+        +.....++..|||+ |.++.  .+..  +... 
T Consensus       124 ~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~  202 (740)
T 4a5s_A          124 HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF  202 (740)
T ss_dssp             TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred             CEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEe
Confidence            445433 34569999988887666543111      000        12234578899996 54442  1100  0000 


Q ss_pred             ------------hhee-eecccCCCceEEEEeCCC---C---eEEEecc------CCCCcceEEEccCCCEEEEE-eCCC
Q 016318          203 ------------NFMQ-LVFSAEDTGRVLKYDPTT---K---QTTVLLR------NLQFPNGLSLSKDKSFFVFC-EGSV  256 (391)
Q Consensus       203 ------------~~~~-~~~~~~~~g~l~~~d~~~---~---~~~~~~~------~~~~~ngia~~~d~~~l~v~-et~~  256 (391)
                                  ...+ ..-+..+...|+.+|.++   +   +...+..      .......++++|||+.+++. ....
T Consensus       203 ~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~  282 (740)
T 4a5s_A          203 YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ  282 (740)
T ss_dssp             CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST
T ss_pred             ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC
Confidence                        0000 000112234688999988   7   5555532      22345578999999844333 2222


Q ss_pred             --CeEEEEEeccc
Q 016318          257 --GRLHKYWLIGE  267 (391)
Q Consensus       257 --~~I~~~~~~g~  267 (391)
                        ..|+.+++++.
T Consensus       283 ~~~~i~~~d~~tg  295 (740)
T 4a5s_A          283 NYSVMDICDYDES  295 (740)
T ss_dssp             TEEEEEEEEEETT
T ss_pred             CEEEEEEEECCCC
Confidence              26888887653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.91  E-value=0.00064  Score=69.78  Aligned_cols=198  Identities=9%  Similarity=-0.045  Sum_probs=102.5

Q ss_pred             CcceEEEccCCCeeEEEec---------CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEec
Q 016318           70 GPESMAFDPLGRGPYTGVA---------DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~---------~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~  140 (391)
                      +..+++++|||+.+.+++.         ++.|+.++.+.-+....                     .........+++++
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~---------------------~~l~~~~~~~~~SP  119 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG---------------------NELPRPIQYLCWSP  119 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---------------------SCCCSSBCCEEECS
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc---------------------eecCcccccceECC
Confidence            3678999999997776665         57788887652111000                     00012345688999


Q ss_pred             CCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCc--------------ccCCcceeecCCCC-EEEEeCC-Cccc---c
Q 016318          141 KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVP--------------LRFTNDLDIDDEGN-VYFTDSS-TNYQ---R  201 (391)
Q Consensus       141 ~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~--------------~~~~~~l~~d~~G~-ly~td~~-~~~~---~  201 (391)
                      ++..|..+ ....|+.++..+++...+........              +.....++..+||+ |.++... ....   .
T Consensus       120 DG~~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~  198 (719)
T 1z68_A          120 VGSKLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY  198 (719)
T ss_dssp             STTCEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             CCCEEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence            43345444 34569999998887665532111000              11235789999996 4443211 0000   0


Q ss_pred             -----------hhheee-ecccCCCceEEEEeCCCCeEE---Eec------cCCCCcceEEEccCCCEEEEE-eCCC--C
Q 016318          202 -----------RNFMQL-VFSAEDTGRVLKYDPTTKQTT---VLL------RNLQFPNGLSLSKDKSFFVFC-EGSV--G  257 (391)
Q Consensus       202 -----------~~~~~~-~~~~~~~g~l~~~d~~~~~~~---~~~------~~~~~~ngia~~~d~~~l~v~-et~~--~  257 (391)
                                 ....+. .-+..+...|+.+|.++++..   .+.      ........++++||++.++.. +...  .
T Consensus       199 ~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~  278 (719)
T 1z68_A          199 SYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVS  278 (719)
T ss_dssp             EECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEE
T ss_pred             eccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeE
Confidence                       000000 001122347888898877642   221      112234678999998744432 2122  3


Q ss_pred             eEEEEE----eccccCccceeec-----ccCCCCC-----ceEeCCCCC
Q 016318          258 RLHKYW----LIGEKAGNLEAFA-----ILPGYPD-----NVRTNEKGE  292 (391)
Q Consensus       258 ~I~~~~----~~g~~~g~~~~~~-----~~~g~p~-----~i~~d~~G~  292 (391)
                      +|+.++    +.+.   +.....     ...+..+     .++++++|+
T Consensus       279 ~l~~~d~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  324 (719)
T 1z68_A          279 VLSICDFREDWQTW---DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI  324 (719)
T ss_dssp             EEEEEEECSSSSSE---ECCGGGEEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred             EEEEEcccCCCCCC---ceEEEEecccccCCceEccccCCccEECCCCC
Confidence            588887    4432   222111     1223333     678889998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.90  E-value=0.001  Score=63.93  Aligned_cols=152  Identities=13%  Similarity=0.059  Sum_probs=93.7

Q ss_pred             CccceEEEecCCCcE-EEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeee
Q 016318          131 GRPLGLRFDKKTGDL-YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       131 g~P~gi~~d~~~g~L-~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      .+..+|+|+|.++++ .+|.....|..+|..++....+... .+ ....+++|++.+ ++++.++.+.            
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~g-H~~~V~~l~f~p~~~~~l~s~s~------------  185 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IG-AGGSITGLKFNPLNTNQFYASSM------------  185 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-CS-SSCCCCEEEECSSCTTEEEEECS------------
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-cC-CCCCEEEEEEeCCCCCEEEEEeC------------
Confidence            457789999755554 4555445588888877654333221 11 123578899997 6787777643            


Q ss_pred             cccCCCceEEEEeCCCCeEEEeccCC---CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCce
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLLRNL---QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV  285 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~~~~---~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i  285 (391)
                           +|.|..||.+++....+...-   .....++++++++.++.+ ...+.|..+++.+...   ..+....+....+
T Consensus       186 -----D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~dg~i~~wd~~~~~~---~~~~~h~~~v~~v  256 (435)
T 4e54_B          186 -----EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTG-DNVGNVILLNMDGKEL---WNLRMHKKKVTHV  256 (435)
T ss_dssp             -----SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEE-CSSSBEEEEESSSCBC---CCSBCCSSCEEEE
T ss_pred             -----CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEE-eCCCcEeeeccCccee---EEEecccceEEee
Confidence                 578889999887776654322   234578999999965554 6677898888765321   1121112234567


Q ss_pred             EeCCCCC-EEEEEcCCCchhh
Q 016318          286 RTNEKGE-FWVAIHCRRSLYS  305 (391)
Q Consensus       286 ~~d~~G~-lwva~~~~~~~~~  305 (391)
                      ++++++. +.++......+.+
T Consensus       257 ~~~p~~~~~~~s~s~d~~v~i  277 (435)
T 4e54_B          257 ALNPCCDWFLATASVDQTVKI  277 (435)
T ss_dssp             EECTTCSSEEEEEETTSBCCE
T ss_pred             eecCCCceEEEEecCcceeeE
Confidence            8888876 4444333344333

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.90  E-value=0.001  Score=61.38  Aligned_cols=206  Identities=10%  Similarity=0.012  Sum_probs=109.2

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEE--ecCCCc-E
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF--DKKTGD-L  145 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~--d~~~g~-L  145 (391)
                      ....++++.++|+.++++..+|.|..|+...........                     ......++++  ++ +++ |
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------------------~~~~v~~~~~~~~~-~~~~l  144 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ---------------------HDAPVKTIHWIKAP-NYSCV  144 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---------------------CSSCEEEEEEEECS-SCEEE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc---------------------ccCceEEEEEEeCC-CCCEE
Confidence            345688999999989999999999999877222211110                     1244567888  66 555 4


Q ss_pred             EEEECCCCeEEEeCCCCeeEEceeccCCC---cccCCcceeecCCCCEEEEeCCCcccc--------------------h
Q 016318          146 YIADAYFGLMKVGPEGGLATSLATEAEGV---PLRFTNDLDIDDEGNVYFTDSSTNYQR--------------------R  202 (391)
Q Consensus       146 ~V~d~~~gl~~~d~~~g~~~~~~~~~~~~---~~~~~~~l~~d~~G~ly~td~~~~~~~--------------------~  202 (391)
                      +.+.....|..+|..+++...........   ......-+....++.+.+-+....-..                    .
T Consensus       145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (368)
T 3mmy_A          145 MTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDK  224 (368)
T ss_dssp             EEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECT
T ss_pred             EEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccC
Confidence            44444444888888766432211111000   001111122233444433332111000                    0


Q ss_pred             h-heeeecccCCCceEEEEeCCCCe----EEEeccCCC------------CcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          203 N-FMQLVFSAEDTGRVLKYDPTTKQ----TTVLLRNLQ------------FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       203 ~-~~~~~~~~~~~g~l~~~d~~~~~----~~~~~~~~~------------~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      . ....++.+..+|.+..||.....    ...+.....            ..+.++++||+++++.+ ...+.|..+++.
T Consensus       225 ~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-~~dg~i~iwd~~  303 (368)
T 3mmy_A          225 QNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV-GSDGRFSFWDKD  303 (368)
T ss_dssp             TSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE-ETTSCEEEEETT
T ss_pred             CCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEE-ccCCeEEEEECC
Confidence            0 00014445556777788876542    112211111            46789999999977665 456788888865


Q ss_pred             cccCccceeecccCCCCCceEeCCCCCEEEEEcC
Q 016318          266 GEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       266 g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      ..  .....+....+....++++++|.+.++...
T Consensus       304 ~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~  335 (368)
T 3mmy_A          304 AR--TKLKTSEQLDQPISACCFNHNGNIFAYASS  335 (368)
T ss_dssp             TT--EEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred             CC--cEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence            32  111222222334567899999986665443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.89  E-value=0.0017  Score=60.89  Aligned_cols=155  Identities=12%  Similarity=0.058  Sum_probs=94.3

Q ss_pred             cCcceEEEcc-CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC--CC-c
Q 016318           69 QGPESMAFDP-LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK--TG-D  144 (391)
Q Consensus        69 ~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~--~g-~  144 (391)
                      ....++++.+ +++.++++..+|.|..|+...........                     .......+.+.+.  ++ .
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~  158 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------------------FEETVYSHHMSPVSTKHCL  158 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---------------------CSSCEEEEEECSSCSSCCE
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---------------------CCCceeeeEeecCCCCCcE
Confidence            3567888988 67778889999999999877322221110                     0122345555542  22 3


Q ss_pred             EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT  223 (391)
Q Consensus       145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  223 (391)
                      ++++.....|..+|..+++........    ......+++.+++. ++++.+.                 +|.+..||..
T Consensus       159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~ll~~~~~-----------------dg~i~i~d~~  217 (408)
T 4a11_B          159 VAVGTRGPKVQLCDLKSGSCSHILQGH----RQEILAVSWSPRYDYILATASA-----------------DSRVKLWDVR  217 (408)
T ss_dssp             EEEEESSSSEEEEESSSSCCCEEECCC----CSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETT
T ss_pred             EEEEcCCCeEEEEeCCCcceeeeecCC----CCcEEEEEECCCCCcEEEEEcC-----------------CCcEEEEECC
Confidence            555555556888998776433222111    12467889999886 5655432                 4778888876


Q ss_pred             CCe--EEEe---------------ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          224 TKQ--TTVL---------------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       224 ~~~--~~~~---------------~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      +++  ...+               .......+.++++|++++++.+ ...+.|..+++..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~  276 (408)
T 4a11_B          218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV-GTDNRMRLWNSSN  276 (408)
T ss_dssp             CSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTT
T ss_pred             CCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe-cCCCeEEEEECCC
Confidence            543  1221               0112245689999999977666 4566788888764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.88  E-value=0.0021  Score=58.39  Aligned_cols=160  Identities=9%  Similarity=0.007  Sum_probs=93.6

Q ss_pred             cCcceEEEcc--CCCeeEEEecCCEEEEEeCCce---------eEEEeecCCCcccCCCCCCccccccccCccCccceEE
Q 016318           69 QGPESMAFDP--LGRGPYTGVADGRILFWDGLKW---------TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (391)
Q Consensus        69 ~gPe~i~~d~--~G~~ly~~~~~g~I~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~  137 (391)
                      ....++++.+  +++.++++..||.|..|+...-         .....                    .....+...+++
T Consensus        58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~--------------------~~~~~~~v~~~~  117 (351)
T 3f3f_A           58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCT--------------------LNDSKGSLYSVK  117 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEE--------------------ECCCSSCEEEEE
T ss_pred             CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeee--------------------ecccCCceeEEE
Confidence            3456788887  5888999999999998876510         11111                    111235567899


Q ss_pred             EecCC-Cc-EEEEECCCCeEEEeCCCCeeEE-ce-----e---ccCCCcccCCcceeecCC---CCEEEEeCCCcccchh
Q 016318          138 FDKKT-GD-LYIADAYFGLMKVGPEGGLATS-LA-----T---EAEGVPLRFTNDLDIDDE---GNVYFTDSSTNYQRRN  203 (391)
Q Consensus       138 ~d~~~-g~-L~V~d~~~gl~~~d~~~g~~~~-~~-----~---~~~~~~~~~~~~l~~d~~---G~ly~td~~~~~~~~~  203 (391)
                      ++++. ++ |+++.....|..+|..+++... +.     .   ............++..++   +.++++.+.       
T Consensus       118 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-------  190 (351)
T 3f3f_A          118 FAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL-------  190 (351)
T ss_dssp             ECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET-------
T ss_pred             EcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC-------
Confidence            99831 55 5555544458888876654211 10     0   001112335567777775   666555533       


Q ss_pred             heeeecccCCCceEEEEeCCCCeEEEe---ccCCCCcceEEEccCC----CEEEEEeCCCCeEEEEEecc
Q 016318          204 FMQLVFSAEDTGRVLKYDPTTKQTTVL---LRNLQFPNGLSLSKDK----SFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       204 ~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~ngia~~~d~----~~l~v~et~~~~I~~~~~~g  266 (391)
                                ++.+..++..+++....   ...-...+.++++|++    +.++ +-...+.|..+++..
T Consensus       191 ----------~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~-s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          191 ----------EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA-TGCKDGRIRIFKITE  249 (351)
T ss_dssp             ----------TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE-EEETTSCEEEEEEEE
T ss_pred             ----------CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE-EEcCCCeEEEEeCCC
Confidence                      45666666666654332   2223356789999998    5444 445567777777654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.87  E-value=0.0033  Score=58.51  Aligned_cols=137  Identities=8%  Similarity=0.111  Sum_probs=76.5

Q ss_pred             EEEEECC--CC---eEEEeCCCCeeEEceec--cCCCcccCCcceee--cC-CCC--EEEEeCCCcccchhheeeecccC
Q 016318          145 LYIADAY--FG---LMKVGPEGGLATSLATE--AEGVPLRFTNDLDI--DD-EGN--VYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       145 L~V~d~~--~g---l~~~d~~~g~~~~~~~~--~~~~~~~~~~~l~~--d~-~G~--ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      +++++..  ..   ++.+|++++.++.+...  .-+..+..|++++.  ++ .|.  +|+++.                 
T Consensus        89 a~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-----------------  151 (355)
T 3amr_A           89 AAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-----------------  151 (355)
T ss_dssp             EEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-----------------
T ss_pred             EEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-----------------
Confidence            4666655  33   56668888877766432  00122468999998  76 455  444442                 


Q ss_pred             CCceEEEEeC---CCCeE--EEe--ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cC---C
Q 016318          213 DTGRVLKYDP---TTKQT--TVL--LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LP---G  280 (391)
Q Consensus       213 ~~g~l~~~d~---~~~~~--~~~--~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~---g  280 (391)
                       +|++..|..   ..++.  +.+  ......+-|+++++....||++|.. ..||+|+.+.....+.+.+..  ..   .
T Consensus       152 -~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~a  229 (355)
T 3amr_A          152 -EGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTR  229 (355)
T ss_dssp             -SSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCS
T ss_pred             -CCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCcccc
Confidence             355555443   22211  111  1223467899999988889999876 569999965322112222221  12   2


Q ss_pred             CCCceEe--CCCCC--EEEEEcCC
Q 016318          281 YPDNVRT--NEKGE--FWVAIHCR  300 (391)
Q Consensus       281 ~p~~i~~--d~~G~--lwva~~~~  300 (391)
                      -+.+|++  .++|.  ++++..+.
T Consensus       230 DvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          230 DIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             CEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             CcceEEEEecCCCCEEEEEEcCCC
Confidence            3567777  44444  45544443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.86  E-value=0.0012  Score=62.92  Aligned_cols=196  Identities=14%  Similarity=0.098  Sum_probs=110.8

Q ss_pred             CcceEEEcc--CCCeeEEEecCC----EEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC
Q 016318           70 GPESMAFDP--LGRGPYTGVADG----RILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (391)
Q Consensus        70 gPe~i~~d~--~G~~ly~~~~~g----~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~  141 (391)
                      ...+|++|+  .+. +|+++..|    .|++.+..  .|+.+.....     .... .   .........+..++++++.
T Consensus        56 ~v~~i~~dp~~~~~-l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~-----~~~~-~---~~~~~~~~~~i~~l~~~~~  125 (394)
T 3b7f_A           56 TIHHIVQDPREPER-MLMAARTGHLGPTVFRSDDGGGNWTEATRPPA-----FNKA-P---EGETGRVVDHVFWLTPGHA  125 (394)
T ss_dssp             EEEEEEECSSSTTC-EEEEEEC--CCEEEEEESSTTSCCEECSBCCC-----CCCC-C-------CCCCCEEEEEEECCT
T ss_pred             ceEEEEECCCCCCe-EEEEecCCCCCccEEEeCCCCCCceECCcccc-----CCCc-c---cccccccccceeEEEeCCC
Confidence            457899998  555 99998887    89988544  5665431100     0000 0   0000001124457888752


Q ss_pred             --CCcEEEEECCCCeEEEeCCCCeeEEceecc--C------------CCcccCCcceeecC--CCCEEEEeCCCcccchh
Q 016318          142 --TGDLYIADAYFGLMKVGPEGGLATSLATEA--E------------GVPLRFTNDLDIDD--EGNVYFTDSSTNYQRRN  203 (391)
Q Consensus       142 --~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~--~------------~~~~~~~~~l~~d~--~G~ly~td~~~~~~~~~  203 (391)
                        .+.||++....+|++.+..+...+.+....  .            +........|++++  .++||++...       
T Consensus       126 ~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-------  198 (394)
T 3b7f_A          126 SEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-------  198 (394)
T ss_dssp             TSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET-------
T ss_pred             CCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC-------
Confidence              578999987778999977666666553211  0            01112345788886  4689998742       


Q ss_pred             heeeecccCCCceEEEEeCCCCeEEEeccCC-------------CCcceEEEccC-CCEEEEEeCCCCeEEEEEeccccC
Q 016318          204 FMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL-------------QFPNGLSLSKD-KSFFVFCEGSVGRLHKYWLIGEKA  269 (391)
Q Consensus       204 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-------------~~~ngia~~~d-~~~l~v~et~~~~I~~~~~~g~~~  269 (391)
                                 ++|++.+..++..+.+...+             .....|+++++ ...+|++.  ...|++.+-.|.  
T Consensus       199 -----------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~D~G~--  263 (394)
T 3b7f_A          199 -----------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMDRREG--  263 (394)
T ss_dssp             -----------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEETTTT--
T ss_pred             -----------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeCCCCC--
Confidence                       57888876666666553321             12356788875 35688874  357888763332  


Q ss_pred             ccceeecc-cCC----CCCceEeC--CCCCEEEEEc
Q 016318          270 GNLEAFAI-LPG----YPDNVRTN--EKGEFWVAIH  298 (391)
Q Consensus       270 g~~~~~~~-~~g----~p~~i~~d--~~G~lwva~~  298 (391)
                       +.+.+.. ++.    +...|.++  ..+.+|++..
T Consensus       264 -tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          264 -VWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             -EEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred             -cceECCCCCCCCCccceEEEEECCCCCCEEEEEec
Confidence             2222221 221    11246676  4577999863

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.86  E-value=0.0016  Score=66.63  Aligned_cols=152  Identities=9%  Similarity=0.031  Sum_probs=84.0

Q ss_pred             cceEEEecCCCcEEEEEC--C---CCeEEEeCCCCeeEEceecc-CCCcccCCcceeecCCCC-EEEE-eCCCcccchhh
Q 016318          133 PLGLRFDKKTGDLYIADA--Y---FGLMKVGPEGGLATSLATEA-EGVPLRFTNDLDIDDEGN-VYFT-DSSTNYQRRNF  204 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~--~---~gl~~~d~~~g~~~~~~~~~-~~~~~~~~~~l~~d~~G~-ly~t-d~~~~~~~~~~  204 (391)
                      ...+++++ +|++++...  .   ..|+.+|..+++...+.... .+........+++.+||+ |++. .....      
T Consensus       257 ~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~------  329 (723)
T 1xfd_A          257 ITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG------  329 (723)
T ss_dssp             EEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS------
T ss_pred             eEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC------
Confidence            45688998 677554322  1   13888899988766554321 111001124788999996 6654 32100      


Q ss_pred             eeeecccCCCceEEEEe-CCCCe---EEEeccCCCC-cceEEEccCCCEEEEEeCC----CCeEEEEEeccccCccceee
Q 016318          205 MQLVFSAEDTGRVLKYD-PTTKQ---TTVLLRNLQF-PNGLSLSKDKSFFVFCEGS----VGRLHKYWLIGEKAGNLEAF  275 (391)
Q Consensus       205 ~~~~~~~~~~g~l~~~d-~~~~~---~~~~~~~~~~-~ngia~~~d~~~l~v~et~----~~~I~~~~~~g~~~g~~~~~  275 (391)
                           ......+|+.+| ..+++   .+.+..+-.. ...++++||++.|+++...    ..+||+++.++..  ....+
T Consensus       330 -----~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~--~~~~l  402 (723)
T 1xfd_A          330 -----GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF--NRQCL  402 (723)
T ss_dssp             -----SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC--CCBCS
T ss_pred             -----CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC--Cccee
Confidence                 000123688998 45555   5554432222 2236899999999877553    2457777654421  11222


Q ss_pred             cc-c--CCCCCceEeCCCCCEEEEEc
Q 016318          276 AI-L--PGYPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       276 ~~-~--~g~p~~i~~d~~G~lwva~~  298 (391)
                      .. +  .+....++++++|+.++...
T Consensus       403 ~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          403 SCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             STTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             cccccCCCCeEEEEECCCCCEEEEEc
Confidence            21 1  23355788999998666543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.84  E-value=0.0012  Score=61.91  Aligned_cols=197  Identities=15%  Similarity=0.085  Sum_probs=99.5

Q ss_pred             cceEEEccCCCeeEEEec-C--CEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccc-eEEEecCCCcEE
Q 016318           71 PESMAFDPLGRGPYTGVA-D--GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL-GLRFDKKTGDLY  146 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~-~--g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~-gi~~d~~~g~L~  146 (391)
                      +.++++++||+.+++... +  ..|+.++.+.-...... .                    ...... ++.+++++..|+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~--------------------~~~~~~~~~~~spdg~~l~   96 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-E--------------------GKGDNTFGGFISTDERAFF   96 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-C--------------------SSCBCTTTCEECTTSSEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-c--------------------CCCCccccceECCCCCEEE
Confidence            556788999996554433 2  37888876521111111 0                    011111 256787444565


Q ss_pred             EEECCCCeEEEeCCCCeeEEceeccCCCcccCCc--ceeecCCC---CEEEEeCCCccc-chhheeee--cccCCCceEE
Q 016318          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTN--DLDIDDEG---NVYFTDSSTNYQ-RRNFMQLV--FSAEDTGRVL  218 (391)
Q Consensus       147 V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~--~l~~d~~G---~ly~td~~~~~~-~~~~~~~~--~~~~~~g~l~  218 (391)
                      ++.....|+.+|.++++.+.+.....+   ..+.  .+++....   .++...  ..+. ..+++...  ........|+
T Consensus        97 ~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~g~~l~~~~~~~~~~~~~~~--~~~spdg~~~~~~~~~~~~~~~~l~  171 (396)
T 3c5m_A           97 YVKNELNLMKVDLETLEEQVIYTVDEE---WKGYGTWVANSDCTKLVGIEILK--RDWQPLTSWEKFAEFYHTNPTCRLI  171 (396)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECCTT---EEEEEEEEECTTSSEEEEEEEEG--GGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred             EEEcCCcEEEEECCCCCcEEEEecccc---cCCCCCEEEeccCCccccccccc--cccCCCCcceeeeeeccCCCcceEE
Confidence            655555699999998876665432111   0011  01111000   000000  0000 00000000  0113456899


Q ss_pred             EEeCCCCeEEEeccCCCCcceEEEcc-CCCEEEEEeCC-C----CeEEEEEeccccCccceeecc-cCC-CCCceEeCCC
Q 016318          219 KYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVFCEGS-V----GRLHKYWLIGEKAGNLEAFAI-LPG-YPDNVRTNEK  290 (391)
Q Consensus       219 ~~d~~~~~~~~~~~~~~~~ngia~~~-d~~~l~v~et~-~----~~I~~~~~~g~~~g~~~~~~~-~~g-~p~~i~~d~~  290 (391)
                      .+|.++++.+.+.........++++| |++.++++... .    .+|+.+++++.+   ...+.. .++ .+..+.++++
T Consensus       172 ~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spd  248 (396)
T 3c5m_A          172 KVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHEFWIPD  248 (396)
T ss_dssp             EEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEEEECTT
T ss_pred             EEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccceEECCC
Confidence            99999988877765555567889999 77755554332 2    479999876532   222221 111 2344688999


Q ss_pred             CC-EEEE
Q 016318          291 GE-FWVA  296 (391)
Q Consensus       291 G~-lwva  296 (391)
                      |+ ++.+
T Consensus       249 g~~l~~~  255 (396)
T 3c5m_A          249 GSAMAYV  255 (396)
T ss_dssp             SSCEEEE
T ss_pred             CCEEEEE
Confidence            98 4444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.82  E-value=0.00075  Score=58.42  Aligned_cols=168  Identities=16%  Similarity=0.061  Sum_probs=94.8

Q ss_pred             hhccccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCCc--eeEEEeecCCCcccCCCCCCccccccccCccCc
Q 016318           55 NLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNNRSELCNPKPIATSYLKNEHICGR  132 (391)
Q Consensus        55 ~~l~~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  132 (391)
                      +=+.++.++..+.+..-.+++++|+|. ||+- .+|.++++++..  ....... ......|.              -..
T Consensus        27 ~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~G--------------w~~   89 (236)
T 1tl2_A           27 NWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGR-AKKIGNGG--------------WNQ   89 (236)
T ss_dssp             CHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHH-CEEEECSC--------------GGG
T ss_pred             chhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCccccccc-ccEecccc--------------ccc
Confidence            345677777776688889999999998 8887 889999998741  0000000 00000000              011


Q ss_pred             cceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEc-e--eccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL-A--TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       133 P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~-~--~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~  209 (391)
                      =..+.||+ +|.||+.. ...|+++++.+..-... .  +.+...-......|.++++|+||..+ .             
T Consensus        90 F~a~~fD~-~G~LYav~-dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-d-------------  153 (236)
T 1tl2_A           90 FQFLFFDP-NGYLYAVS-KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-G-------------  153 (236)
T ss_dssp             CSEEEECT-TSCEEEEE-TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-T-------------
T ss_pred             ceEEEECC-CCCEEEeC-CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-C-------------
Confidence            24688998 89999993 44499999843211111 1  11111111234778999999999998 3             


Q ss_pred             ccCCCceEEEEeCCCCe-------EEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          210 SAEDTGRVLKYDPTTKQ-------TTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~-------~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                           |.+++-.+-++.       ...+. .+-..-.-+.+++++. ||..+  +.+|++..
T Consensus       154 -----g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~-l~~v~--~g~~Y~~~  207 (236)
T 1tl2_A          154 -----QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKFYEDY  207 (236)
T ss_dssp             -----TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEEEEES
T ss_pred             -----CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc-EEEEe--CCeEEecC
Confidence                 455553332111       11111 2222222355788887 66665  56777763

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.82  E-value=0.0037  Score=59.59  Aligned_cols=193  Identities=9%  Similarity=-0.050  Sum_probs=107.1

Q ss_pred             EccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE-EECCCC
Q 016318           76 FDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI-ADAYFG  153 (391)
Q Consensus        76 ~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V-~d~~~g  153 (391)
                      +..+++.+.++..++.+..++.. ........                    ........++.+.+ +++.++ +...+.
T Consensus       195 ~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~--------------------~~h~~~~~~~~~~~-~g~~l~s~~~D~~  253 (420)
T 4gga_A          195 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATL--------------------SGHSQEVCGLRWAP-DGRHLASGGNDNL  253 (420)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTSSSCEEEEE--------------------ECCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred             EeeCCCEEEEEeCCCceeEeeecccceeeEEe--------------------cccccceeeeeecC-CCCeeeeeecccc
Confidence            33455666667777777766654 11111111                    11123455777877 555444 444445


Q ss_pred             eEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc
Q 016318          154 LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR  232 (391)
Q Consensus       154 l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  232 (391)
                      +..++..+++..................++..+++ ++..+.++               ..++.|..||..+++......
T Consensus       254 v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g---------------s~D~~I~iwd~~t~~~~~~~~  318 (420)
T 4gga_A          254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG---------------TSDRHIRIWNVCSGACLSAVD  318 (420)
T ss_dssp             EEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC---------------TTTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee---------------cCCCEEEEEeCCccccceeec
Confidence            77777765532211000000111235667777754 55554322               235788899999988766665


Q ss_pred             CCCCcceEEEccCCCEEEEEeC-CCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCchhhh
Q 016318          233 NLQFPNGLSLSKDKSFFVFCEG-SVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSH  306 (391)
Q Consensus       233 ~~~~~ngia~~~d~~~l~v~et-~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~  306 (391)
                      .......++++++++.++++.. ..+.|..++....  .....+....+....++++++|++.++......+.+|
T Consensus       319 ~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~--~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW  391 (420)
T 4gga_A          319 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW  391 (420)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            5567778899999997776643 4567888875431  1112222112334568899999977766555554443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.81  E-value=0.0018  Score=67.17  Aligned_cols=139  Identities=12%  Similarity=0.004  Sum_probs=81.9

Q ss_pred             CccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCC--CCEEEEeCCCcccchhheeee
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~--G~ly~td~~~~~~~~~~~~~~  208 (391)
                      +...++++++++..|..+...+.|..+|..++..+..... .+ ....+..+++.++  |++.++.+.            
T Consensus        10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~-h~~~V~~l~~s~~~~~~~l~s~s~------------   75 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TG-HEGPVWRVDWAHPKFGTILASCSY------------   75 (753)
T ss_dssp             CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CC-CSSCEEEEEECCTTSCSEEEEEET------------
T ss_pred             ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cC-CcCceEEEEecCCCCCCEEEEEeC------------
Confidence            4567888888434455555444477777764433332211 11 1234677888776  877777643            


Q ss_pred             cccCCCceEEEEeCCCCeEE---EeccCCCCcceEEEccC--CCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCC
Q 016318          209 FSAEDTGRVLKYDPTTKQTT---VLLRNLQFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD  283 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~---~~~~~~~~~ngia~~~d--~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~  283 (391)
                           +|.|..||..+++..   .+.........++++|+  ++.++.+ +..+.|..+++..........+...++...
T Consensus        76 -----Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg-s~dg~I~vwdl~~~~~~~~~~~~~~~~~v~  149 (753)
T 3jro_A           76 -----DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA-SSDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (753)
T ss_dssp             -----TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-ETTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred             -----CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEE-eCCCcEEEEEeecCCCcceeEeecCCCceE
Confidence                 578888998887532   22233446678999999  8866555 567789988876542222222222233344


Q ss_pred             ceEeCC
Q 016318          284 NVRTNE  289 (391)
Q Consensus       284 ~i~~d~  289 (391)
                      .+..++
T Consensus       150 ~l~~~p  155 (753)
T 3jro_A          150 SASWAP  155 (753)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            566666

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.00066  Score=67.44  Aligned_cols=144  Identities=13%  Similarity=0.086  Sum_probs=95.1

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCC-c-e-----eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGL-K-W-----TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~-~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      -.+++++|||+.+++++.||.|..|+.. + .     -.+.....+                .....+....+++++ +|
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~----------------~~gh~~~V~sVawSP-dg  194 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS----------------DAGSKDWVTHIVWYE-DV  194 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS----------------CTTCCCCEEEEEEET-TE
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecc----------------cccccccEEEEEEcC-Cc
Confidence            5689999999999999999999999876 2 1     011111000                011124678999998 67


Q ss_pred             cEEEEECCCCeEEEeCCCCeeEEceecc-CCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          144 DLYIADAYFGLMKVGPEGGLATSLATEA-EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       144 ~L~V~d~~~gl~~~d~~~g~~~~~~~~~-~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                       |.++...+.+..++.+++......... .+. -..+.++++.  |+..++.+                  ++.|..||.
T Consensus       195 -Laass~D~tVrlWd~~~~~~~~~~~tL~~~h-~~~V~svaFs--g~~LASa~------------------~~tIkLWd~  252 (588)
T 2j04_A          195 -LVAALSNNSVFSMTVSASSHQPVSRMIQNAS-RRKITDLKIV--DYKVVLTC------------------PGYVHKIDL  252 (588)
T ss_dssp             -EEEEETTCCEEEECCCSSSSCCCEEEEECCC-SSCCCCEEEE--TTEEEEEC------------------SSEEEEEET
T ss_pred             -EEEEeCCCeEEEEECCCCccccceeeecccc-cCcEEEEEEE--CCEEEEEe------------------CCeEEEEEC
Confidence             767766678999999877632100011 111 1357788887  45555543                  378999999


Q ss_pred             CCCeEEEec-cCCCCcceEEE--ccCCCEEEEEe
Q 016318          223 TTKQTTVLL-RNLQFPNGLSL--SKDKSFFVFCE  253 (391)
Q Consensus       223 ~~~~~~~~~-~~~~~~ngia~--~~d~~~l~v~e  253 (391)
                      .+++...+. ......++|++  +||+..+.++.
T Consensus       253 ~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          253 KNYSISSLKTGSLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             TTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred             CCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence            988886655 44456778999  99998666653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.78  E-value=0.0076  Score=61.89  Aligned_cols=190  Identities=11%  Similarity=0.043  Sum_probs=101.2

Q ss_pred             ceEEEccCCCeeEEEec-CC----EEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           72 ESMAFDPLGRGPYTGVA-DG----RILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~-~g----~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      .+++++|||+.+.++.. +|    .|+.++...-.......                     ......++++++++..|+
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~---------------------~~~~~~~~~wspDg~~l~  186 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL---------------------ERVKFSCMAWTHDGKGMF  186 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---------------------EEECSCCEEECTTSSEEE
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc---------------------cCcccceEEEEeCCCEEE
Confidence            46789999996655544 33    78888766211111100                     011134678888445577


Q ss_pred             EEECCCC----------------eEEEeCCCCeeE--EceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheee
Q 016318          147 IADAYFG----------------LMKVGPEGGLAT--SLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       147 V~d~~~g----------------l~~~d~~~g~~~--~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~  207 (391)
                      ++.....                |++++..+++.+  .+....+  ...+..++.+++||+ |+++....          
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~--~~~~~~~~~~SpDg~~l~~~~~~~----------  254 (710)
T 2xdw_A          187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD--EPKWMGGAELSDDGRYVLLSIREG----------  254 (710)
T ss_dssp             EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT--CTTCEEEEEECTTSCEEEEEEECS----------
T ss_pred             EEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC--CCeEEEEEEEcCCCCEEEEEEEcc----------
Confidence            6654433                888888776532  2211111  112345788899996 44443210          


Q ss_pred             ecccCCCceEEEEeCCC------C--eEEEeccCCCCcceEEEccCCCEEEEEeCC---CCeEEEEEeccccCccceeec
Q 016318          208 VFSAEDTGRVLKYDPTT------K--QTTVLLRNLQFPNGLSLSKDKSFFVFCEGS---VGRLHKYWLIGEKAGNLEAFA  276 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~------~--~~~~~~~~~~~~ngia~~~d~~~l~v~et~---~~~I~~~~~~g~~~g~~~~~~  276 (391)
                         ...+..++.+|.++      +  +.+.+....... .-.+++||+.+|+....   +.+|+++++++......+.+.
T Consensus       255 ---~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          255 ---CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             ---SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             ---CCCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence               01145788888765      4  455554333222 23578899988887543   347999987653211222222


Q ss_pred             -ccCC-CCCceEeCCCCCEEEEEc
Q 016318          277 -ILPG-YPDNVRTNEKGEFWVAIH  298 (391)
Q Consensus       277 -~~~g-~p~~i~~d~~G~lwva~~  298 (391)
                       ..+. ...++...+++.+++...
T Consensus       331 ~~~~~~~~~~~~~~~~~~lv~~~~  354 (710)
T 2xdw_A          331 PEHEKDVLEWVACVRSNFLVLCYL  354 (710)
T ss_dssp             CCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             CCCCCCeEEEEEEEcCCEEEEEEE
Confidence             1111 223455555566655543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.77  E-value=0.022  Score=52.98  Aligned_cols=212  Identities=5%  Similarity=-0.052  Sum_probs=106.8

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .-.+++++++|+.+.++..+ ++..|+.+.........                      ......+.+..+.+.+.++.
T Consensus        21 ~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~   77 (355)
T 3vu4_A           21 PVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQE----------------------MRHLSKVRMLHRTNYVAFVT   77 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEE----------------------CSCCCEEEECTTSSEEEEEC
T ss_pred             ceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeee----------------------cCCeEEEEEcCCCCEEEEEE
Confidence            45689999999966666655 46666655222221110                      00122344444233343433


Q ss_pred             CC-CCeEEEeCCCCeeEEceeccCCC--c-ccCCcceeecCCCCEEEEeCCCc-ccchh------------heeeecccC
Q 016318          150 AY-FGLMKVGPEGGLATSLATEAEGV--P-LRFTNDLDIDDEGNVYFTDSSTN-YQRRN------------FMQLVFSAE  212 (391)
Q Consensus       150 ~~-~gl~~~d~~~g~~~~~~~~~~~~--~-~~~~~~l~~d~~G~ly~td~~~~-~~~~~------------~~~~~~~~~  212 (391)
                      .. ..|..+|..+++....... ...  . ...++.+++..++.+++=+.... -....            .......+.
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~  156 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIKV-DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEF  156 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESS
T ss_pred             CCccEEEEEECCCCcEEEEEEC-CCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCC
Confidence            33 3477788877754322111 110  0 00122233333444444442211 00000            001111146


Q ss_pred             CCceEEEEeCCCCe-----------------EEEeccCCCCcceEEEccCCCEEEEEeCCCCe-EEEEEeccccCcccee
Q 016318          213 DTGRVLKYDPTTKQ-----------------TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR-LHKYWLIGEKAGNLEA  274 (391)
Q Consensus       213 ~~g~l~~~d~~~~~-----------------~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~-I~~~~~~g~~~g~~~~  274 (391)
                      .+|.|..||..+++                 ...+...-...+.++++||++++..+ ...+. |..+++...  .....
T Consensus       157 ~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~-s~d~~~v~iwd~~~~--~~~~~  233 (355)
T 3vu4_A          157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC-SQDGTIIRVFKTEDG--VLVRE  233 (355)
T ss_dssp             CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE-ETTCSEEEEEETTTC--CEEEE
T ss_pred             cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE-eCCCCEEEEEECCCC--cEEEE
Confidence            67889999988765                 34444444566899999999955544 55566 777775431  11222


Q ss_pred             ec-c-cCCCCCceEeCCCCCEEEEEcCCCchhhhhh
Q 016318          275 FA-I-LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLM  308 (391)
Q Consensus       275 ~~-~-~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l  308 (391)
                      +. . ..+....++++++|++.++......+.++.+
T Consensus       234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence            32 1 2334456889999998777666555554434

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.76  E-value=0.0055  Score=56.40  Aligned_cols=156  Identities=11%  Similarity=0.048  Sum_probs=91.4

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCc-------eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLK-------WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      .-.++++.++|+.+.+++.|+.|..|+...       ......                    .....+...++++++ +
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~--------------------~~~h~~~V~~v~~sp-~  118 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI--------------------IEGHENEVKGVAWSN-D  118 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEE--------------------EC----CEEEEEECT-T
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEE--------------------EcCCCCcEEEEEECC-C
Confidence            356899999999899999999999987641       011110                    111234567899998 5


Q ss_pred             CcEEE-EECCCCeEEEeCC-CCe-eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          143 GDLYI-ADAYFGLMKVGPE-GGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       143 g~L~V-~d~~~gl~~~d~~-~g~-~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      +++++ +.....|..+|.. ++. .+.+.. ..+ .....+.+++.++|++.++.+.                 ++.+..
T Consensus       119 g~~las~s~D~~v~iwd~~~~~~~~~~~~~-~~~-h~~~v~~v~~~p~~~~l~s~s~-----------------D~~i~i  179 (330)
T 2hes_X          119 GYYLATCSRDKSVWIWETDESGEEYECISV-LQE-HSQDVKHVIWHPSEALLASSSY-----------------DDTVRI  179 (330)
T ss_dssp             SCEEEEEETTSCEEEEECCTTCCCCEEEEE-ECC-CSSCEEEEEECSSSSEEEEEET-----------------TSCEEE
T ss_pred             CCEEEEEeCCCEEEEEeccCCCCCeEEEEE-ecc-CCCceEEEEECCCCCEEEEEcC-----------------CCeEEE
Confidence            66544 4444458888873 221 122111 111 1134678899999988777643                 467777


Q ss_pred             EeCCCCeE---EEeccCCCCcceEEEccC--CCEEEEEeCCCCeEEEEEecc
Q 016318          220 YDPTTKQT---TVLLRNLQFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       220 ~d~~~~~~---~~~~~~~~~~ngia~~~d--~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ||..++..   ..+.........++++|+  +..+ ++-...+.|..+++.+
T Consensus       180 W~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          180 WKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL-CSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEE-EEEETTSCEEEEEEEE
T ss_pred             EECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEE-EEEeCCCeEEEEEecC
Confidence            77655532   233333345678899998  5534 4434556666666543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.76  E-value=0.0057  Score=55.95  Aligned_cols=203  Identities=8%  Similarity=-0.011  Sum_probs=99.3

Q ss_pred             cceEEEcc--CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC-CcE
Q 016318           71 PESMAFDP--LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT-GDL  145 (391)
Q Consensus        71 Pe~i~~d~--~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~-g~L  145 (391)
                      -.++++.+  +|+.+.+++.|+.|..|+..  .+......                    ....+...++++++++ +.+
T Consensus        60 V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~--------------------~~h~~~V~~v~~~p~~~g~~  119 (316)
T 3bg1_A           60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH--------------------AGHDSSVNSVCWAPHDYGLI  119 (316)
T ss_dssp             EEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE--------------------CCCSSCCCEEEECCTTTCSC
T ss_pred             EEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc--------------------cCCCCceEEEEECCCCCCcE
Confidence            34677764  47889999999999999875  12221111                    0112446788998732 454


Q ss_pred             EEEECC-CCeEEEeCCCCe-eEEceeccCCCcccCCcceeecCCC---CEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          146 YIADAY-FGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEG---NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       146 ~V~d~~-~gl~~~d~~~g~-~~~~~~~~~~~~~~~~~~l~~d~~G---~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      +++... ..|..++..++. .+... ...+. ....+.++..+++   .+.....+ ..+  .....++.+..++.+..|
T Consensus       120 lasgs~D~~i~lwd~~~~~~~~~~~-~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~l~sgs~D~~v~lW  194 (316)
T 3bg1_A          120 LACGSSDGAISLLTYTGEGQWEVKK-INNAH-TIGCNAVSWAPAVVPGSLIDHPSG-QKP--NYIKRFASGGCDNLIKLW  194 (316)
T ss_dssp             EEEECSSSCEEEEEECSSSCEEECC-BTTSS-SSCBCCCEECCCCCC------CCS-CCC--CCCCBEECCBTTSBCCEE
T ss_pred             EEEEcCCCCEEEEecCCCCCcceee-eeccc-cCCcceEEEccccCCccccccccc-cCc--cccceEEEecCCCeEEEE
Confidence            444344 447777766542 22111 11111 1234555665542   11000000 000  000011222335666667


Q ss_pred             eCCCC-eE---EEeccCCCCcceEEEccCC----CEEEEEeCCCCeEEEEEeccccCcc--ceeecccCCCCCceEeCCC
Q 016318          221 DPTTK-QT---TVLLRNLQFPNGLSLSKDK----SFFVFCEGSVGRLHKYWLIGEKAGN--LEAFAILPGYPDNVRTNEK  290 (391)
Q Consensus       221 d~~~~-~~---~~~~~~~~~~ngia~~~d~----~~l~v~et~~~~I~~~~~~g~~~g~--~~~~~~~~g~p~~i~~d~~  290 (391)
                      |..++ +.   ..+...-...+.++++|++    + ++++-...+.|..+++.....+.  .+.+....+....++++++
T Consensus       195 d~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  273 (316)
T 3bg1_A          195 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS-TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT  273 (316)
T ss_dssp             EECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC-EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT
T ss_pred             EeCCCCccceeeecccCCCceEEEEecCCCCCCCc-eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC
Confidence            76543 21   1222222356789999986    5 44554566788877765421111  1222222334456778888


Q ss_pred             CCEEEEEcC
Q 016318          291 GEFWVAIHC  299 (391)
Q Consensus       291 G~lwva~~~  299 (391)
                      |++.++...
T Consensus       274 g~~las~~~  282 (316)
T 3bg1_A          274 ANILAVSGG  282 (316)
T ss_dssp             TCCEEEEES
T ss_pred             CCEEEEEcC
Confidence            876655444

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.76  E-value=0.0026  Score=61.22  Aligned_cols=147  Identities=12%  Similarity=0.105  Sum_probs=93.6

Q ss_pred             EEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCe
Q 016318           75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (391)
Q Consensus        75 ~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl  154 (391)
                      ++.++++.++++..+|.|..|+......+....                    ........+++++++..|+++.....|
T Consensus       275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~l~sg~~dg~i  334 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS--------------------GHTDRIYSTIYDHERKRCISASMDTTI  334 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--------------------CCCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence            456778889999999999999876333322211                    113446788999843345555555559


Q ss_pred             EEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCC
Q 016318          155 MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL  234 (391)
Q Consensus       155 ~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~  234 (391)
                      ..+|..+++........    ......++.+  ++..++.+.                 +|.+..||..+++........
T Consensus       335 ~vwd~~~~~~~~~~~~h----~~~v~~~~~~--~~~l~s~s~-----------------dg~v~vwd~~~~~~~~~~~~~  391 (464)
T 3v7d_B          335 RIWDLENGELMYTLQGH----TALVGLLRLS--DKFLVSAAA-----------------DGSIRGWDANDYSRKFSYHHT  391 (464)
T ss_dssp             EEEETTTTEEEEEECCC----SSCEEEEEEC--SSEEEEEET-----------------TSEEEEEETTTCCEEEEEECT
T ss_pred             EEEECCCCcEEEEEeCC----CCcEEEEEEc--CCEEEEEeC-----------------CCcEEEEECCCCceeeeecCC
Confidence            99999877543322111    1234556665  455555432                 578999999887655444444


Q ss_pred             CCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          235 QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       235 ~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .....++++++++.+..+.  .+.|..+++..
T Consensus       392 ~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~  421 (464)
T 3v7d_B          392 NLSAITTFYVSDNILVSGS--ENQFNIYNLRS  421 (464)
T ss_dssp             TCCCEEEEEECSSEEEEEE--TTEEEEEETTT
T ss_pred             CCccEEEEEeCCCEEEEec--CCeEEEEECCC
Confidence            4566788999999665554  57888888654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.74  E-value=0.033  Score=53.18  Aligned_cols=144  Identities=10%  Similarity=0.006  Sum_probs=86.1

Q ss_pred             EEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCe
Q 016318           75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (391)
Q Consensus        75 ~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl  154 (391)
                      ++..+|+.+++++.+|.|..|+...........                    ...+....+.++  ++.|+.+.....|
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~~--~~~l~s~~~dg~i  181 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV--------------------GHTGGVWSSQMR--DNIIISGSTDRTL  181 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECC--------------------CCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc--------------------CCCCCEEEEEec--CCEEEEEeCCCeE
Confidence            455568889999999999999876322222111                    112345677776  3556666655669


Q ss_pred             EEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec-cC
Q 016318          155 MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RN  233 (391)
Q Consensus       155 ~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~  233 (391)
                      ..+|..+++.........    .....++.+  ++..++.+.                 +|.+..||..+++..... ..
T Consensus       182 ~vwd~~~~~~~~~~~~h~----~~v~~~~~~--~~~l~s~s~-----------------dg~i~~wd~~~~~~~~~~~~~  238 (445)
T 2ovr_B          182 KVWNAETGECIHTLYGHT----STVRCMHLH--EKRVVSGSR-----------------DATLRVWDIETGQCLHVLMGH  238 (445)
T ss_dssp             EEEETTTTEEEEEECCCS----SCEEEEEEE--TTEEEEEET-----------------TSEEEEEESSSCCEEEEEECC
T ss_pred             EEEECCcCcEEEEECCCC----CcEEEEEec--CCEEEEEeC-----------------CCEEEEEECCCCcEEEEEcCC
Confidence            999998875433222111    134455554  344444322                 578999998877654433 22


Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          234 LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       234 ~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ....+.+++  +++.++.+ +..+.|..+++..
T Consensus       239 ~~~v~~~~~--~~~~l~~~-~~dg~i~iwd~~~  268 (445)
T 2ovr_B          239 VAAVRCVQY--DGRRVVSG-AYDFMVKVWDPET  268 (445)
T ss_dssp             SSCEEEEEE--CSSCEEEE-ETTSCEEEEEGGG
T ss_pred             cccEEEEEE--CCCEEEEE-cCCCEEEEEECCC
Confidence            334456666  67756555 5567888887653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.74  E-value=0.011  Score=54.39  Aligned_cols=150  Identities=8%  Similarity=-0.026  Sum_probs=87.7

Q ss_pred             cCcceEEEccCCCeeEEEecC-----CEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC
Q 016318           69 QGPESMAFDPLGRGPYTGVAD-----GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~-----g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~  141 (391)
                      ....+++++|||+.+++...+     ..|+.++.+  ....+...                       .. ..+++++++
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-----------------------~~-~~~~~wspd  114 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-----------------------KN-IRSLEWNED  114 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-----------------------SE-EEEEEECTT
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-----------------------CC-ccceeECCC
Confidence            345678999999866655432     247777765  22222111                       11 456788874


Q ss_pred             CCcEEEEEC---------------------------CCCeEEEeCCCCee-EEceeccCCCcccCCcceeecCCCCEEEE
Q 016318          142 TGDLYIADA---------------------------YFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFT  193 (391)
Q Consensus       142 ~g~L~V~d~---------------------------~~gl~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~~G~ly~t  193 (391)
                      +..|+++..                           ...|+.+|..+++. +.+..  .     ....++..++| ++++
T Consensus       115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-----~~~~~~~spdg-~~~~  186 (347)
T 2gop_A          115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-----RFSSGIWHRDK-IVVN  186 (347)
T ss_dssp             SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-----TTCEEEEETTE-EEEE
T ss_pred             CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-----CcccccCCCCe-EEEE
Confidence            444655532                           13489999998876 55533  1     45678889999 7776


Q ss_pred             eCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC-------CCeEEEEE
Q 016318          194 DSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS-------VGRLHKYW  263 (391)
Q Consensus       194 d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~-------~~~I~~~~  263 (391)
                      .....-  .      ....+...|+.+|  +++.+.+... ...  ..++|||+.|+++...       ..+|+.++
T Consensus       187 ~~~~~~--~------~~~~~~~~l~~~d--~~~~~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          187 VPHREI--I------PQYFKFWDIYIWE--DGKEEKMFEK-VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             EECCCS--S------CCSSCCEEEEEEE--TTEEEEEEEE-ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             Eecccc--c------ccccccccEEEeC--CCceEEeccC-cce--eeECCCCCEEEEEEccccCCccccceEEEEC
Confidence            522100  0      0000135788898  6777666544 222  2338999987766433       35788886

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.63  E-value=0.00039  Score=71.40  Aligned_cols=136  Identities=10%  Similarity=0.001  Sum_probs=84.8

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      +.++.+.++|+ +++...++.|+.++..  ....+....                 ..  .......+++++++..|.++
T Consensus        18 ~~~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~-----------------~~--~~~~~~~~~~SpDg~~la~~   77 (719)
T 1z68_A           18 TFFPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNR-----------------TM--KSVNASNYGLSPDRQFVYLE   77 (719)
T ss_dssp             CCCCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHH-----------------HH--HTTTCSEEEECTTSSEEEEE
T ss_pred             CCccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccc-----------------cc--cccceeeEEECCCCCeEEEE
Confidence            44778889997 5555578899999876  222221100                 00  00124578899843345554


Q ss_pred             EC---------CCCeEEEeCCCCee---EEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCc
Q 016318          149 DA---------YFGLMKVGPEGGLA---TSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       149 d~---------~~gl~~~d~~~g~~---~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      ..         ...|+.+|.++++.   +.+.        .....+++.|||+ |.++.                   ++
T Consensus        78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~--------~~~~~~~~SPDG~~la~~~-------------------~~  130 (719)
T 1z68_A           78 SDYSKLWRYSYTATYYIYDLSNGEFVRGNELP--------RPIQYLCWSPVGSKLAYVY-------------------QN  130 (719)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEECCSSCCC--------SSBCCEEECSSTTCEEEEE-------------------TT
T ss_pred             ecCceeEEeecceEEEEEECCCCccccceecC--------cccccceECCCCCEEEEEE-------------------CC
Confidence            33         13489999998875   3331        2367789999995 54443                   25


Q ss_pred             eEEEEeCCCCeEEEeccCC-------------------CCcceEEEccCCCEEEEEe
Q 016318          216 RVLKYDPTTKQTTVLLRNL-------------------QFPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~~~~-------------------~~~ngia~~~d~~~l~v~e  253 (391)
                      .|+.++..+++...+....                   ....+++++|||+.|+++.
T Consensus       131 ~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          131 NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence            7889998887766554221                   1125899999999887764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.59  E-value=0.014  Score=54.29  Aligned_cols=72  Identities=13%  Similarity=0.114  Sum_probs=52.1

Q ss_pred             CCcceeecCCCCEEEEeCCCcccchhheeeecccCCCce-EEEEeCCCCeEEEecc---CCCCcceEEEccCCCEEEEEe
Q 016318          178 FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGR-VLKYDPTTKQTTVLLR---NLQFPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       178 ~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~~~~~~~~~~---~~~~~ngia~~~d~~~l~v~e  253 (391)
                      .+..++++++|++.++.+.                 ++. +..||..+++......   .....+.++++||++++..+ 
T Consensus       197 ~v~~~~~s~~g~~l~s~s~-----------------d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~-  258 (355)
T 3vu4_A          197 PIKMVRLNRKSDMVATCSQ-----------------DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVV-  258 (355)
T ss_dssp             CEEEEEECTTSSEEEEEET-----------------TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEE-
T ss_pred             ceEEEEECCCCCEEEEEeC-----------------CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEE-
Confidence            4678888999987777643                 577 8889998876544333   33456789999999966555 


Q ss_pred             CCCCeEEEEEeccc
Q 016318          254 GSVGRLHKYWLIGE  267 (391)
Q Consensus       254 t~~~~I~~~~~~g~  267 (391)
                      +..+.|..+++...
T Consensus       259 s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          259 SDKWTLHVFEIFND  272 (355)
T ss_dssp             ETTCEEEEEESSCC
T ss_pred             ECCCEEEEEEccCC
Confidence            55678888887643

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.58  E-value=0.00073  Score=67.53  Aligned_cols=119  Identities=15%  Similarity=0.224  Sum_probs=81.7

Q ss_pred             ccCccceEEEecCCCcEEEEECC---------------------CC-eEEEeCCCCe-------eEEcee---c------
Q 016318          129 ICGRPLGLRFDKKTGDLYIADAY---------------------FG-LMKVGPEGGL-------ATSLAT---E------  170 (391)
Q Consensus       129 ~~g~P~gi~~d~~~g~L~V~d~~---------------------~g-l~~~d~~~g~-------~~~~~~---~------  170 (391)
                      ...||-++.+++.++.+|++...                     .| |++++++++.       .+.+..   .      
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            35789999999778899998653                     13 8888765431       122211   0      


Q ss_pred             --------cCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCC--CCcceE
Q 016318          171 --------AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL--QFPNGL  240 (391)
Q Consensus       171 --------~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngi  240 (391)
                              .....+..|.+|++|++|+|||.+.+......     .+....+..++.+++.+++++.+....  ....|+
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~-----~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~  536 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAG-----DFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGI  536 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSG-----GGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEE
T ss_pred             ccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccc-----cccccccceEEEEeCCCCeEEEEEeCCCCccCcCe
Confidence                    01124678999999999999999754221111     112234568999999999998876443  467899


Q ss_pred             EEccCCCEEEEE
Q 016318          241 SLSKDKSFFVFC  252 (391)
Q Consensus       241 a~~~d~~~l~v~  252 (391)
                      +++||+++|||+
T Consensus       537 ~fspDg~tlfvn  548 (592)
T 3zwu_A          537 SFSPDQKTLFVG  548 (592)
T ss_dssp             EECTTSSEEEEE
T ss_pred             eECCCCCEEEEE
Confidence            999999999886

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.56  E-value=0.038  Score=52.71  Aligned_cols=144  Identities=13%  Similarity=0.114  Sum_probs=83.2

Q ss_pred             EEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCe
Q 016318           75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (391)
Q Consensus        75 ~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl  154 (391)
                      ++..+|+.++++..+|.|..|+....+......                    ...+....+.++  ++.|+++.....|
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------------------~h~~~v~~l~~~--~~~l~sg~~dg~i  195 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT--------------------GHTGSVLCLQYD--ERVIITGSSDSTV  195 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEEC--------------------CCSSCEEEEECC--SSEEEEEETTSCE
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc--------------------CCCCcEEEEEEC--CCEEEEEcCCCeE
Confidence            455578889999999999999876322222111                    012334566663  4556666655569


Q ss_pred             EEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE----Ee
Q 016318          155 MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT----VL  230 (391)
Q Consensus       155 ~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~----~~  230 (391)
                      ..+|..+++........    ......++++  ++..++.+.                 +|.+..||..+++..    .+
T Consensus       196 ~vwd~~~~~~~~~~~~h----~~~v~~l~~~--~~~l~s~s~-----------------dg~i~vwd~~~~~~~~~~~~~  252 (435)
T 1p22_A          196 RVWDVNTGEMLNTLIHH----CEAVLHLRFN--NGMMVTCSK-----------------DRSIAVWDMASPTDITLRRVL  252 (435)
T ss_dssp             EEEESSSCCEEEEECCC----CSCEEEEECC--TTEEEEEET-----------------TSCEEEEECSSSSCCEEEEEE
T ss_pred             EEEECCCCcEEEEEcCC----CCcEEEEEEc--CCEEEEeeC-----------------CCcEEEEeCCCCCCceeeeEe
Confidence            99998877543322111    1234455554  334444322                 578888998766532    22


Q ss_pred             ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          231 LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       231 ~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .......+.+++  +++.++.+ +..+.|..+++..
T Consensus       253 ~~~~~~v~~~~~--~~~~l~s~-~~dg~i~vwd~~~  285 (435)
T 1p22_A          253 VGHRAAVNVVDF--DDKYIVSA-SGDRTIKVWNTST  285 (435)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEE-ETTSEEEEEETTT
T ss_pred             cCCCCcEEEEEe--CCCEEEEE-eCCCeEEEEECCc
Confidence            222233455665  77766655 5567888888653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.53  E-value=0.0024  Score=62.19  Aligned_cols=159  Identities=17%  Similarity=0.182  Sum_probs=89.8

Q ss_pred             cCccceEEEecCCC--cEEEEECCCCeEEEeCCCCee-EEcee---cc-CC---CcccCCcceeecCC----CCEEEEeC
Q 016318          130 CGRPLGLRFDKKTG--DLYIADAYFGLMKVGPEGGLA-TSLAT---EA-EG---VPLRFTNDLDIDDE----GNVYFTDS  195 (391)
Q Consensus       130 ~g~P~gi~~d~~~g--~L~V~d~~~gl~~~d~~~g~~-~~~~~---~~-~~---~~~~~~~~l~~d~~----G~ly~td~  195 (391)
                      ...|.+|++.+ +|  +|||+.....|++++.++... +.+..   .. .+   .....+-+|+++++    |.||++-+
T Consensus        13 L~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt   91 (463)
T 2wg3_C           13 LRQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT   91 (463)
T ss_dssp             ESSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CCCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence            56799999998 55  599998765588888765421 12211   11 11   00234567999985    89999853


Q ss_pred             CCcccchhheeeecccCCCceEEEEeCCCC--------eEEEecc-----CCCCcceEEEccCCCEEEEEeCC-------
Q 016318          196 STNYQRRNFMQLVFSAEDTGRVLKYDPTTK--------QTTVLLR-----NLQFPNGLSLSKDKSFFVFCEGS-------  255 (391)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~--------~~~~~~~-----~~~~~ngia~~~d~~~l~v~et~-------  255 (391)
                      ...-....     -......+|.||....+        +.+++.+     .......|+++|||. |||+--.       
T Consensus        92 ~~~~~~~~-----~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~~~~~~  165 (463)
T 2wg3_C           92 TNQERWAI-----GPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGMITLDD  165 (463)
T ss_dssp             ECCCSSCS-----SSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTTCCHHH
T ss_pred             CCCCCccc-----CCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCCCCCCc
Confidence            21000000     00000136766654321        1223321     224556799999997 9998322       


Q ss_pred             ----------CCeEEEEEecccc------C-----------ccceeecccCCCCCceEeCCC-----CCEEE
Q 016318          256 ----------VGRLHKYWLIGEK------A-----------GNLEAFAILPGYPDNVRTNEK-----GEFWV  295 (391)
Q Consensus       256 ----------~~~I~~~~~~g~~------~-----------g~~~~~~~~~g~p~~i~~d~~-----G~lwv  295 (391)
                                .+.|+|++.+|..      .           ...++|+.--.-|-++++|+.     |.+|+
T Consensus       166 ~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~  237 (463)
T 2wg3_C          166 MEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTI  237 (463)
T ss_dssp             HHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEE
T ss_pred             cccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEE
Confidence                      3579999998731      0           124566531124889999987     65554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.028  Score=53.37  Aligned_cols=163  Identities=10%  Similarity=0.014  Sum_probs=93.4

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC-----ceeEEEeecCCCcccCCCCCCccccccccC--ccCccceEE--Eec
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL-----KWTDFAFTSNNRSELCNPKPIATSYLKNEH--ICGRPLGLR--FDK  140 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~P~gi~--~d~  140 (391)
                      ...++++.++++.+++++.||.|..|+..     ...........  .          .+...+  .......+.  +.+
T Consensus       113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i--~----------~~~~~~~~~~~~~~~~~~~~~~  180 (437)
T 3gre_A          113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECI--R----------KINLKNFGKNEYAVRMRAFVNE  180 (437)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEE--E----------EEEGGGGSSCCCEEEEEEEECS
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccccee--E----------EEEccCcccccCceEEEEEEcC
Confidence            45688999999989999999999888652     11111000000  0          000000  123344444  334


Q ss_pred             CCCc-EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          141 KTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       141 ~~g~-L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                       +++ |+++.....|..+|..+++........  .....+..++++++|++.++.+.                 +|.|..
T Consensus       181 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~-----------------dg~i~i  240 (437)
T 3gre_A          181 -EKSLLVALTNLSRVIIFDIRTLERLQIIENS--PRHGAVSSICIDEECCVLILGTT-----------------RGIIDI  240 (437)
T ss_dssp             -SCEEEEEEETTSEEEEEETTTCCEEEEEECC--GGGCCEEEEEECTTSCEEEEEET-----------------TSCEEE
T ss_pred             -CCCEEEEEeCCCeEEEEeCCCCeeeEEEccC--CCCCceEEEEECCCCCEEEEEcC-----------------CCeEEE
Confidence             444 444544455889998877543322210  01235788999999987776543                 578999


Q ss_pred             EeCCCCeEEEec--cCCCCcceEEEc----cCCCEEEEEeCCCCeEEEEEec
Q 016318          220 YDPTTKQTTVLL--RNLQFPNGLSLS----KDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       220 ~d~~~~~~~~~~--~~~~~~ngia~~----~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      ||..+++.....  ..-...+.++++    ++++.+ ++-...+.|..+++.
T Consensus       241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l-~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          241 WDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIV-VGGSSKTFLTIWNFV  291 (437)
T ss_dssp             EETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEE-EEESTTEEEEEEETT
T ss_pred             EEcCCccEEEEEecCCCCceEEEEeccccCCCccEE-EEEcCCCcEEEEEcC
Confidence            998887654432  222234567444    566644 444566678888765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.50  E-value=0.0051  Score=57.45  Aligned_cols=116  Identities=9%  Similarity=-0.040  Sum_probs=69.6

Q ss_pred             cceEEEec-CCCcEEEEECC------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhh
Q 016318          133 PLGLRFDK-KTGDLYIADAY------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNF  204 (391)
Q Consensus       133 P~gi~~d~-~~g~L~V~d~~------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~  204 (391)
                      ...+.+++ +++.|+++...      ..|+.++.++++.+.+...   .....+..++++++|+ |+++...        
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~spdg~~l~~~~~~--------  258 (396)
T 3c5m_A          190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH---AEGESCTHEFWIPDGSAMAYVSYF--------  258 (396)
T ss_dssp             EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC---CTTEEEEEEEECTTSSCEEEEEEE--------
T ss_pred             cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc---CCCccccceEECCCCCEEEEEecC--------
Confidence            44667776 34445544322      2599999888766655431   1112456678999986 6665321        


Q ss_pred             eeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEcc-CCCEEEEEeC---------------CCCeEEEEEecc
Q 016318          205 MQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVFCEG---------------SVGRLHKYWLIG  266 (391)
Q Consensus       205 ~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~-d~~~l~v~et---------------~~~~I~~~~~~g  266 (391)
                           .+...+.|+.+|.++++.+.+... ...+ +++++ ||+.++++..               ....|+++++++
T Consensus       259 -----~~~~~~~l~~~d~~~g~~~~l~~~-~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          259 -----KGQTDRVIYKANPETLENEEVMVM-PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             -----TTTCCEEEEEECTTTCCEEEEEEC-CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred             -----CCCccceEEEEECCCCCeEEeeeC-CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence                 011124599999988877665421 1122 78999 9996655321               336799998765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.48  E-value=0.026  Score=50.62  Aligned_cols=217  Identities=9%  Similarity=0.001  Sum_probs=113.3

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcc----------c--CCCCC---------Ccccccccc
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSE----------L--CNPKP---------IATSYLKNE  127 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~----------~--~~~~~---------~~~~~~~~~  127 (391)
                      ..-.++++.++|+.+.+++.||.|..|+....+.+.........          .  +...+         .........
T Consensus        68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~  147 (318)
T 4ggc_A           68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS  147 (318)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence            45669999999999999999999999987621111111000000          0  00000         000000001


Q ss_pred             CccCccceEEEecCCCcEEE-EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhhe
Q 016318          128 HICGRPLGLRFDKKTGDLYI-ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFM  205 (391)
Q Consensus       128 ~~~g~P~gi~~d~~~g~L~V-~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~  205 (391)
                      ........+.+.+ .+++++ +.....|..+|..+++..................++..+++ ++....+          
T Consensus       148 ~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------  216 (318)
T 4ggc_A          148 GHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG----------  216 (318)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE----------
T ss_pred             CccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe----------
Confidence            1123345566666 455444 44334477778776532211000000011233455555543 4433221          


Q ss_pred             eeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeC-CCCeEEEEEeccccCccceeecccCCCCCc
Q 016318          206 QLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEG-SVGRLHKYWLIGEKAGNLEAFAILPGYPDN  284 (391)
Q Consensus       206 ~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et-~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~  284 (391)
                           +...+.+..+|..+.+.............++++++++.++++.. ..+.|..+++...  .....+....+....
T Consensus       217 -----~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~--~~~~~l~gH~~~V~~  289 (318)
T 4ggc_A          217 -----GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--AKVAELKGHTSRVLS  289 (318)
T ss_dssp             -----CTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC--CEEEEECCCSSCEEE
T ss_pred             -----cCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC--cEEEEEcCCCCCEEE
Confidence                 12346677888887776665555556678889999997776643 4567888876431  111222212233456


Q ss_pred             eEeCCCCCEEEEEcCCCch
Q 016318          285 VRTNEKGEFWVAIHCRRSL  303 (391)
Q Consensus       285 i~~d~~G~lwva~~~~~~~  303 (391)
                      ++++++|++.++....+.+
T Consensus       290 l~~spdg~~l~S~s~D~~v  308 (318)
T 4ggc_A          290 LTMSPDGATVASAAADETL  308 (318)
T ss_dssp             EEECTTSSCEEEEETTTEE
T ss_pred             EEEcCCCCEEEEEecCCeE
Confidence            8899999977765554443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.45  E-value=0.055  Score=54.10  Aligned_cols=43  Identities=21%  Similarity=0.269  Sum_probs=27.5

Q ss_pred             cceEEEEEC-CCCCEEEEEeCCCCCeeeceeEEEEECCEEEEecCC
Q 016318          337 LHAMAVKYS-PEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVL  381 (391)
Q Consensus       337 ~~~~v~~~d-~~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs~~  381 (391)
                      ..+.+.++| .+|+.+..+....+.....  .+...+|++|+++..
T Consensus       483 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p--~~~~~~G~~yv~~~~  526 (571)
T 2ad6_A          483 LDGYLKALDNKDGKELWNFKMPSGGIGSP--MTYSFKGKQYIGSMY  526 (571)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCCcEeee--EEEEECCEEEEEEEC
Confidence            346788888 4688888887654432211  223578999998653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.44  E-value=0.0034  Score=60.59  Aligned_cols=157  Identities=11%  Similarity=0.054  Sum_probs=92.2

Q ss_pred             cceEEEccCCCeeE----EEecCCEEEEEeCCce--------eEEEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318           71 PESMAFDPLGRGPY----TGVADGRILFWDGLKW--------TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (391)
Q Consensus        71 Pe~i~~d~~G~~ly----~~~~~g~I~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~  138 (391)
                      ..+++++++|+.++    ++..++.|..|+....        +.+....                 ........+.++++
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~-----------------~~~~h~~~V~~v~~  157 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK-----------------LLKDAGGMVIDMKW  157 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE-----------------CCCSGGGSEEEEEE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee-----------------ccCCCCCceEEEEE
Confidence            67899999999777    5667888888865311        0000000                 01112355789999


Q ss_pred             ecCCCcEEE-EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceE
Q 016318          139 DKKTGDLYI-ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRV  217 (391)
Q Consensus       139 d~~~g~L~V-~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l  217 (391)
                      +++++++++ +...+.|..+|..++........    ....+..++.+++|+..++.+.                 +|.|
T Consensus       158 ~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~----~~~~v~~v~wspdg~~lasgs~-----------------dg~v  216 (434)
T 2oit_A          158 NPTVPSMVAVCLADGSIAVLQVTETVKVCATLP----STVAVTSVCWSPKGKQLAVGKQ-----------------NGTV  216 (434)
T ss_dssp             CSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC----GGGCEEEEEECTTSSCEEEEET-----------------TSCE
T ss_pred             CCCCCCEEEEEECCCeEEEEEcCCCcceeeccC----CCCceeEEEEcCCCCEEEEEcC-----------------CCcE
Confidence            984366655 44444588889887743211111    1135788999999976665433                 5789


Q ss_pred             EEEeCCCCeEEEeccCCC-------CcceEEEccCCCEEEEEeCCC------CeEEEEEec
Q 016318          218 LKYDPTTKQTTVLLRNLQ-------FPNGLSLSKDKSFFVFCEGSV------GRLHKYWLI  265 (391)
Q Consensus       218 ~~~d~~~~~~~~~~~~~~-------~~ngia~~~d~~~l~v~et~~------~~I~~~~~~  265 (391)
                      ..||.+......+.....       ....+++++++.++....+..      ..+..+++.
T Consensus       217 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          217 VQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP  277 (434)
T ss_dssp             EEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred             EEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence            999987333333322111       345778888887655444333      236666654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.39  E-value=0.0064  Score=62.78  Aligned_cols=137  Identities=9%  Similarity=-0.004  Sum_probs=81.9

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      ++.+.++|..++.+  ++.|..++..  +...+.....                 .........++.+++++..|.++..
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~Spdg~~l~~~~~   81 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENST-----------------FDEFGHSINDYSISPDGQFILLEYN   81 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTT-----------------TTTCCSCCCEEEECTTSSEEEEEEE
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechh-----------------hhhhcccccceEECCCCCEEEEEEC
Confidence            67888999866665  8999999876  2222211100                 0000112235778884334555432


Q ss_pred             C---------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          151 Y---------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       151 ~---------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      .         ..++.+|.++++.+.+....     ......++.|||+ |.++.                   ++.|+.+
T Consensus        82 ~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~-----~~~~~~~~SPdG~~la~~~-------------------~~~i~~~  137 (740)
T 4a5s_A           82 YVKQWRHSYTASYDIYDLNKRQLITEERIP-----NNTQWVTWSPVGHKLAYVW-------------------NNDIYVK  137 (740)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEECCSSCCC-----TTEEEEEECSSTTCEEEEE-------------------TTEEEEE
T ss_pred             CeeeEEEccceEEEEEECCCCcEEEcccCC-----CcceeeEECCCCCEEEEEE-------------------CCeEEEE
Confidence            1         12778999999876553211     1345678899985 55553                   2468888


Q ss_pred             eCCCCeEEEeccCC-------------------CCcceEEEccCCCEEEEE
Q 016318          221 DPTTKQTTVLLRNL-------------------QFPNGLSLSKDKSFFVFC  252 (391)
Q Consensus       221 d~~~~~~~~~~~~~-------------------~~~ngia~~~d~~~l~v~  252 (391)
                      +..+++.+.+....                   ....++++||||+.|.++
T Consensus       138 ~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             ECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence            88777766553211                   222458899999987765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.39  E-value=0.071  Score=47.93  Aligned_cols=115  Identities=13%  Similarity=0.051  Sum_probs=68.3

Q ss_pred             CccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecC--CCCEEEEeCCCcccchhheee
Q 016318          131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD--EGNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~--~G~ly~td~~~~~~~~~~~~~  207 (391)
                      +....++|++ +|+++++... ..|..++..++..+.+.. ..+. -...+.+++.+  +|++.++.+.           
T Consensus        10 ~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~-l~gH-~~~V~~v~~s~~~~g~~l~s~s~-----------   75 (297)
T 2pm7_B           10 EMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDT-LTGH-EGPVWRVDWAHPKFGTILASCSY-----------   75 (297)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEE-ECCC-SSCEEEEEECCGGGCSEEEEEET-----------
T ss_pred             CceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEE-Eccc-cCCeEEEEecCCCcCCEEEEEcC-----------
Confidence            3456889998 5665554444 447777776432111111 1111 12456777764  4777776543           


Q ss_pred             ecccCCCceEEEEeCCCCeE---EEeccCCCCcceEEEccC--CCEEEEEeCCCCeEEEEEecc
Q 016318          208 VFSAEDTGRVLKYDPTTKQT---TVLLRNLQFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~---~~~~~~~~~~ngia~~~d--~~~l~v~et~~~~I~~~~~~g  266 (391)
                            ++.+..||.++++.   ..+...-...+.++++|+  ++.+..+ +..+.|..+++..
T Consensus        76 ------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~-s~d~~v~~wd~~~  132 (297)
T 2pm7_B           76 ------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVA-SSDGKVSVVEFKE  132 (297)
T ss_dssp             ------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE-ETTSEEEEEEBCS
T ss_pred             ------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEE-ECCCcEEEEEecC
Confidence                  57888899877642   223223345678999997  7755544 5567888888754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.37  E-value=0.085  Score=48.52  Aligned_cols=175  Identities=13%  Similarity=0.107  Sum_probs=94.7

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .+|++++ ++ +|+....|.|++-...  .|+......                    ...+.+.+|.+.. ++++|++.
T Consensus        83 ~~i~~~~-~~-~~~~g~~g~i~~S~DgG~tW~~~~~~~--------------------~~~~~~~~i~~~~-~~~~~~~~  139 (327)
T 2xbg_A           83 NSVSFQG-NE-GWIVGEPPIMLHTTDGGQSWSQIPLDP--------------------KLPGSPRLIKALG-NGSAEMIT  139 (327)
T ss_dssp             EEEEEET-TE-EEEEEETTEEEEESSTTSSCEECCCCT--------------------TCSSCEEEEEEEE-TTEEEEEE
T ss_pred             EEEEecC-Ce-EEEEECCCeEEEECCCCCCceECcccc--------------------CCCCCeEEEEEEC-CCCEEEEe
Confidence            3567764 44 6766667777775332  455432100                    0013456777766 67888887


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC-CCeEE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT-TKQTT  228 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~~  228 (391)
                      ...+|++-.-.+...+.+.....    ....+++++++|.+|+....                  |.+++-+.. ....+
T Consensus       140 ~~g~v~~S~DgG~tW~~~~~~~~----~~~~~~~~~~~~~~~~~g~~------------------G~~~~S~d~gG~tW~  197 (327)
T 2xbg_A          140 NVGAIYRTKDSGKNWQALVQEAI----GVMRNLNRSPSGEYVAVSSR------------------GSFYSTWEPGQTAWE  197 (327)
T ss_dssp             TTCCEEEESSTTSSEEEEECSCC----CCEEEEEECTTSCEEEEETT------------------SSEEEEECTTCSSCE
T ss_pred             CCccEEEEcCCCCCCEEeecCCC----cceEEEEEcCCCcEEEEECC------------------CcEEEEeCCCCCcee
Confidence            65557776544445555432221    23467888888888877632                  677776533 23333


Q ss_pred             EeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCCCC-----CceEeCCCCCEEEEEc
Q 016318          229 VLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGYP-----DNVRTNEKGEFWVAIH  298 (391)
Q Consensus       229 ~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g~p-----~~i~~d~~G~lwva~~  298 (391)
                      .+... ......++++++++ +|++.. .+.+++...++.     +.+..  .|..+     ..+..++++.+|++..
T Consensus       198 ~~~~~~~~~~~~~~~~~~g~-~~~~~~-~G~~~~s~~D~G-----~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          198 PHNRTTSRRLHNMGFTPDGR-LWMIVN-GGKIAFSDPDNS-----ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             EEECCSSSCEEEEEECTTSC-EEEEET-TTEEEEEETTEE-----EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred             ECCCCCCCccceeEECCCCC-EEEEeC-CceEEEecCCCC-----CeeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence            33221 23445788888888 666533 456666533321     12221  11111     2355666777887654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.01  Score=62.81  Aligned_cols=154  Identities=7%  Similarity=-0.083  Sum_probs=98.4

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      -.++++.+ |+.++++..|+.|..|+...-..+....                     ..+....+++++++..|++++.
T Consensus        61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~---------------------~~~~V~~v~~sp~g~~l~sgs~  118 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF---------------------VPGKITSIDTDASLDWMLIGLQ  118 (902)
T ss_dssp             EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE---------------------CSSCEEEEECCTTCSEEEEEET
T ss_pred             EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc---------------------CCCCEEEEEECCCCCEEEEEcC
Confidence            45788988 8878999999999999876211111110                     0234678889985455677766


Q ss_pred             CCCeEEEeCCCCeeEEcee-------ccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          151 YFGLMKVGPEGGLATSLAT-------EAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       151 ~~gl~~~d~~~g~~~~~~~-------~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      ...|..+|.++++...+..       .........+..+++.+++ .+.++.+.                 +|.+ .||.
T Consensus       119 dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~-----------------dg~v-lWd~  180 (902)
T 2oaj_A          119 NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE-----------------YVTL-TYSL  180 (902)
T ss_dssp             TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS-----------------SCEE-EEET
T ss_pred             CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC-----------------CCcE-EEEC
Confidence            6669999998886542211       0001112357889999864 44444432                 4778 9998


Q ss_pred             CCCeEEEeccCC-------------------CCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          223 TTKQTTVLLRNL-------------------QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       223 ~~~~~~~~~~~~-------------------~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      ++++.......-                   ...+.++++|||+++..+ ...+.|..+++.
T Consensus       181 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg-s~Dg~i~lWd~~  241 (902)
T 2oaj_A          181 VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI-HEDNSLVFWDAN  241 (902)
T ss_dssp             TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE-ETTCCEEEEETT
T ss_pred             CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECC
Confidence            887654332211                   346789999999955544 556778887764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.31  E-value=0.08  Score=54.09  Aligned_cols=42  Identities=19%  Similarity=0.247  Sum_probs=26.6

Q ss_pred             ccceEEEEEC-CCCCEEEEEeCCCCCeeeceeEEEEECCEEEEec
Q 016318          336 RLHAMAVKYS-PEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGS  379 (391)
Q Consensus       336 ~~~~~v~~~d-~~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs  379 (391)
                      ...+.+.++| .+|+.+..+....+.....  ...+.+|+.|++.
T Consensus       495 ~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p--~~y~~~G~~~v~~  537 (677)
T 1kb0_A          495 TADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGRQYVSV  537 (677)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEE
T ss_pred             CCCCcEEEEECCCCceeeeeeCCCCcccCC--EEEEeCCEEEEEE
Confidence            3446677888 4688888887665543222  2235788888864

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.23  E-value=0.004  Score=53.88  Aligned_cols=107  Identities=15%  Similarity=0.009  Sum_probs=69.6

Q ss_pred             ccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEcee---ccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318          132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT---EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       132 ~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~---~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      ....++|++ +|.||+. ....|+++++.++.-.....   .+...-......+.+|++|.||+++              
T Consensus        42 ~~~~laf~P-~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~--------------  105 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS--------------  105 (236)
T ss_dssp             TCSEEEECT-TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE--------------
T ss_pred             cceeEEECC-CccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeC--------------
Confidence            456899999 8999999 44459999987632222111   1100012236788999999999995              


Q ss_pred             cccCCCceEEEEeCCCCe--------EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 016318          209 FSAEDTGRVLKYDPTTKQ--------TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY  262 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~--------~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~  262 (391)
                           +|.|+|.++.+..        .++-..+-..-.-|.++|+|. ||...  +++++|.
T Consensus       106 -----dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~  159 (236)
T 1tl2_A          106 -----KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKA  159 (236)
T ss_dssp             -----TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEE
T ss_pred             -----CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEec
Confidence                 4799999984421        111122223346789999998 88775  6677774

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.22  E-value=0.0099  Score=57.30  Aligned_cols=168  Identities=8%  Similarity=-0.065  Sum_probs=91.8

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcc--cCCCCCCccccccccCccCccceEEEecCCCc-EEE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSE--LCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYI  147 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~V  147 (391)
                      -..+++.+++..++++..++ +..++................  .+...       ...+..+.+.++++++ +++ |+|
T Consensus        39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~sp-dg~~lav  109 (434)
T 2oit_A           39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQG-------LLVPMKFPIHHLALSC-DNLTLSA  109 (434)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCC-------EEECCSSCEEEEEECT-TSCEEEE
T ss_pred             ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcc-------ccccCCCcccEEEEcC-CCCEEEE
Confidence            45688888888788887776 555443211000000000000  00000       0011134578999998 555 444


Q ss_pred             ---EECCCC-eEEEeCCCC-----ee-EEce--eccCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeeecccCCC
Q 016318          148 ---ADAYFG-LMKVGPEGG-----LA-TSLA--TEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       148 ---~d~~~g-l~~~d~~~g-----~~-~~~~--~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                         +....+ |..+|..++     +. +.+.  ....+ ....+.++++.++ ++++++.+.                 +
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~las~s~-----------------D  171 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD-AGGMVIDMKWNPTVPSMVAVCLA-----------------D  171 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS-GGGSEEEEEECSSCTTEEEEEET-----------------T
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC-CCCceEEEEECCCCCCEEEEEEC-----------------C
Confidence               222233 677776433     10 1110  11111 1235788899987 777776543                 5


Q ss_pred             ceEEEEeCCCCeEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          215 GRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      |.|..||..+++....... -...+.++++|+|+.|+++ ...+.|..++..+
T Consensus       172 g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasg-s~dg~v~iwd~~~  223 (434)
T 2oit_A          172 GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVG-KQNGTVVQYLPTL  223 (434)
T ss_dssp             SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEE-ETTSCEEEECTTC
T ss_pred             CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEE-cCCCcEEEEccCC
Confidence            7899999887754322222 3467889999999977766 4567888887653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.21  E-value=0.11  Score=46.47  Aligned_cols=99  Identities=6%  Similarity=-0.061  Sum_probs=48.6

Q ss_pred             CCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE-----EeccCCCCcceEEEccCCCEEE-E
Q 016318          178 FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT-----VLLRNLQFPNGLSLSKDKSFFV-F  251 (391)
Q Consensus       178 ~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-----~~~~~~~~~ngia~~~d~~~l~-v  251 (391)
                      ....++..++|+..++.+.                 +|.+..||..+++..     ...........+++.+++..+. +
T Consensus       152 ~~~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  214 (318)
T 4ggc_A          152 EVCGLRWAPDGRHLASGGN-----------------DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT  214 (318)
T ss_dssp             CEEEEEECTTSSEEEEEET-----------------TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEE
T ss_pred             ceEEEEEcCCCCEEEEEec-----------------CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEE
Confidence            3456677778876666533                 577888888765421     1111222345677777655443 3


Q ss_pred             EeC-CCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEE
Q 016318          252 CEG-SVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       252 ~et-~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva  296 (391)
                      +.. ..+.|..++....   ..............+...+++...++
T Consensus       215 ~~~~~~~~i~lwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          215 GGGTSDRHIRIWNVCSG---ACLSAVDAHSQVCSILWSPHYKELIS  257 (318)
T ss_dssp             EECTTTCEEEEEETTTC---CEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             EecCCCCEEEEEecccc---cccccccceeeeeeeeecccccceEE
Confidence            333 2344555543321   11111111122334556666664443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.014  Score=57.70  Aligned_cols=197  Identities=9%  Similarity=-0.068  Sum_probs=111.0

Q ss_pred             CcceEEEccC------CCeeEEEecCCEEEEEeCCcee----EEEeecCCCcccCCCCCCccccccccCccCccceEEEe
Q 016318           70 GPESMAFDPL------GRGPYTGVADGRILFWDGLKWT----DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (391)
Q Consensus        70 gPe~i~~d~~------G~~ly~~~~~g~I~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d  139 (391)
                      ...++++.|+      ++++.+++.||.|..|+...-.    ......       .      +........+...+++++
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~-------~------p~~~l~~h~~~v~sv~~s  275 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE-------K------PSLTLSLADSLITTFDFL  275 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC-------S------CSEEECCTTTCEEEEEES
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec-------C------ceEEEEcCCCCEEEEEec
Confidence            3457888875      5678889999999888765100    000000       0      000111112446688888


Q ss_pred             cCCCcEEEEECCCCeEEEeCCCCeeE-EceeccCCCcccCCcce--eecCCC-CEEEEeCCCcccchhheeeecccCCCc
Q 016318          140 KKTGDLYIADAYFGLMKVGPEGGLAT-SLATEAEGVPLRFTNDL--DIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       140 ~~~g~L~V~d~~~gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~l--~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      + ++.|..+.....|..+|..++... ......    -...+++  +..++| ++.++.+.                 ++
T Consensus       276 ~-~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H----~~~V~sv~~~~s~~g~~~laS~S~-----------------D~  333 (524)
T 2j04_B          276 S-PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVH----DSYILSVSTAYSDFEDTVVSTVAV-----------------DG  333 (524)
T ss_dssp             S-SSEEEEEETTSEEEEEETTBCSSCSEEEECS----SSCEEEEEEECCTTSCCEEEEEET-----------------TS
T ss_pred             C-CCeEEEEeCCCEEEEEECCCCCCceEEeecc----cccEEEEEEEcCCCCCeEEEEecc-----------------CC
Confidence            7 566666655555888898765321 111111    1245677  346677 77777643                 57


Q ss_pred             eEEEEeCCCCeEE-EeccCC--CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC
Q 016318          216 RVLKYDPTTKQTT-VLLRNL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  292 (391)
Q Consensus       216 ~l~~~d~~~~~~~-~~~~~~--~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~  292 (391)
                      .+..||..+++.. .+....  ...+.++++|+++. +++....+.|..+++....  ....+....+....++++++|.
T Consensus       334 tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~--~~~~l~gH~~~V~sva~Sp~g~  410 (524)
T 2j04_B          334 YFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAF--AVHPLVSRETTITAIGVSRLHP  410 (524)
T ss_dssp             EEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTT--CCEEEEECSSCEEEEECCSSCC
T ss_pred             eEEEEECCCCCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcccc--cceeeecCCCceEEEEeCCCCC
Confidence            8888987665421 111111  12467999999985 4554556677777654321  1122332334456788899998


Q ss_pred             EEEEEcCCCchh
Q 016318          293 FWVAIHCRRSLY  304 (391)
Q Consensus       293 lwva~~~~~~~~  304 (391)
                      +.++......+.
T Consensus       411 ~l~Sgs~Dgtv~  422 (524)
T 2j04_B          411 MVLAGSADGSLI  422 (524)
T ss_dssp             BCEEEETTTEEE
T ss_pred             eEEEEECCCEEE
Confidence            766655554443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.10  E-value=0.1  Score=49.61  Aligned_cols=148  Identities=16%  Similarity=0.121  Sum_probs=84.8

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~  151 (391)
                      .++++  +++.+++++.||.|..|+...........                    ........+.++  ++.++.+...
T Consensus       177 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--------------------~h~~~v~~l~~~--~~~l~s~s~d  232 (435)
T 1p22_A          177 LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI--------------------HHCEAVLHLRFN--NGMMVTCSKD  232 (435)
T ss_dssp             EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC--------------------CCCSCEEEEECC--TTEEEEEETT
T ss_pred             EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc--------------------CCCCcEEEEEEc--CCEEEEeeCC
Confidence            34444  67889999999999999876222221111                    112345567775  3566666655


Q ss_pred             CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318          152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       152 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  231 (391)
                      ..|..+|..++..........+. ......++.  +|+..++.+.                 +|.+..||..+++.....
T Consensus       233 g~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~  292 (435)
T 1p22_A          233 RSIAVWDMASPTDITLRRVLVGH-RAAVNVVDF--DDKYIVSASG-----------------DRTIKVWNTSTCEFVRTL  292 (435)
T ss_dssp             SCEEEEECSSSSCCEEEEEECCC-SSCEEEEEE--ETTEEEEEET-----------------TSEEEEEETTTCCEEEEE
T ss_pred             CcEEEEeCCCCCCceeeeEecCC-CCcEEEEEe--CCCEEEEEeC-----------------CCeEEEEECCcCcEEEEE
Confidence            66888888765432211111111 123445555  5555555432                 578999999887654433


Q ss_pred             cC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          232 RN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       232 ~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .. ......+++  +++.++.+ ...+.|..+++..
T Consensus       293 ~~~~~~v~~~~~--~~~~l~~g-~~dg~i~iwd~~~  325 (435)
T 1p22_A          293 NGHKRGIACLQY--RDRLVVSG-SSDNTIRLWDIEC  325 (435)
T ss_dssp             ECCSSCEEEEEE--ETTEEEEE-ETTSCEEEEETTT
T ss_pred             cCCCCcEEEEEe--CCCEEEEE-eCCCeEEEEECCC
Confidence            32 233445555  56655554 5567888888653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.09  E-value=0.21  Score=47.47  Aligned_cols=145  Identities=11%  Similarity=0.002  Sum_probs=85.4

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~  151 (391)
                      .+++++  ++.++++..||.|..|+...........                    .......++.++  ++.++++...
T Consensus       163 ~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~~--~~~l~s~s~d  218 (445)
T 2ovr_B          163 WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY--------------------GHTSTVRCMHLH--EKRVVSGSRD  218 (445)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEEE--TTEEEEEETT
T ss_pred             EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC--------------------CCCCcEEEEEec--CCEEEEEeCC
Confidence            455554  5678999999999999876322222111                    012334567776  3567777655


Q ss_pred             CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318          152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       152 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  231 (391)
                      ..|..+|..+++.........    .....++.  +|+..++.+.                 +|.+..||..+++.....
T Consensus       219 g~i~~wd~~~~~~~~~~~~~~----~~v~~~~~--~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~  275 (445)
T 2ovr_B          219 ATLRVWDIETGQCLHVLMGHV----AAVRCVQY--DGRRVVSGAY-----------------DFMVKVWDPETETCLHTL  275 (445)
T ss_dssp             SEEEEEESSSCCEEEEEECCS----SCEEEEEE--CSSCEEEEET-----------------TSCEEEEEGGGTEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEcCCc----ccEEEEEE--CCCEEEEEcC-----------------CCEEEEEECCCCcEeEEe
Confidence            568889988765433222111    23445555  5554444422                 578889998877654433


Q ss_pred             cC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          232 RN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       232 ~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .. ......+++  +++.++.+ ...+.|..+++..
T Consensus       276 ~~~~~~v~~~~~--~~~~l~~~-~~d~~i~i~d~~~  308 (445)
T 2ovr_B          276 QGHTNRVYSLQF--DGIHVVSG-SLDTSIRVWDVET  308 (445)
T ss_dssp             CCCSSCEEEEEE--CSSEEEEE-ETTSCEEEEETTT
T ss_pred             cCCCCceEEEEE--CCCEEEEE-eCCCeEEEEECCC
Confidence            32 233445555  78866665 4567888888653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.07  E-value=0.07  Score=49.11  Aligned_cols=143  Identities=13%  Similarity=0.093  Sum_probs=79.3

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .+|++.++++ +|+...+|.|++-...  .|+.....                      ..+...++.+++ ++++|++.
T Consensus       125 ~~i~~~~~~~-~~~~~~~g~v~~S~DgG~tW~~~~~~----------------------~~~~~~~~~~~~-~~~~~~~g  180 (327)
T 2xbg_A          125 RLIKALGNGS-AEMITNVGAIYRTKDSGKNWQALVQE----------------------AIGVMRNLNRSP-SGEYVAVS  180 (327)
T ss_dssp             EEEEEEETTE-EEEEETTCCEEEESSTTSSEEEEECS----------------------CCCCEEEEEECT-TSCEEEEE
T ss_pred             EEEEEECCCC-EEEEeCCccEEEEcCCCCCCEEeecC----------------------CCcceEEEEEcC-CCcEEEEE
Confidence            4566655666 6666667777776432  56554211                      012346778887 67888776


Q ss_pred             CCCCeEEEeCC-CCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE-
Q 016318          150 AYFGLMKVGPE-GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT-  227 (391)
Q Consensus       150 ~~~gl~~~d~~-~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-  227 (391)
                      ...++++-+-. +...+.+...    ......+++++++|++|+....                  |.+++.+.+.++. 
T Consensus       181 ~~G~~~~S~d~gG~tW~~~~~~----~~~~~~~~~~~~~g~~~~~~~~------------------G~~~~s~~D~G~tW  238 (327)
T 2xbg_A          181 SRGSFYSTWEPGQTAWEPHNRT----TSRRLHNMGFTPDGRLWMIVNG------------------GKIAFSDPDNSENW  238 (327)
T ss_dssp             TTSSEEEEECTTCSSCEEEECC----SSSCEEEEEECTTSCEEEEETT------------------TEEEEEETTEEEEE
T ss_pred             CCCcEEEEeCCCCCceeECCCC----CCCccceeEECCCCCEEEEeCC------------------ceEEEecCCCCCee
Confidence            55567776543 3334443221    1124567888899999988742                  5666654332332 


Q ss_pred             EEeccC-CC---CcceEEEccCCCEEEEEeCCCCeEEEE
Q 016318          228 TVLLRN-LQ---FPNGLSLSKDKSFFVFCEGSVGRLHKY  262 (391)
Q Consensus       228 ~~~~~~-~~---~~ngia~~~d~~~l~v~et~~~~I~~~  262 (391)
                      +.+... +.   ....+++.++++ +|++.. .+.|++-
T Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i~~S  275 (327)
T 2xbg_A          239 GELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGALLCS  275 (327)
T ss_dssp             CCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCEEEE
T ss_pred             EeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeEEEe
Confidence            222211 11   134567777777 666533 4456543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.99  E-value=0.046  Score=55.99  Aligned_cols=186  Identities=15%  Similarity=0.094  Sum_probs=98.1

Q ss_pred             cceEEEccCCCeeEEEecCCE----------------EEEEeCC--cee-EEEeecCCCcccCCCCCCccccccccCccC
Q 016318           71 PESMAFDPLGRGPYTGVADGR----------------ILFWDGL--KWT-DFAFTSNNRSELCNPKPIATSYLKNEHICG  131 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~----------------I~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  131 (391)
                      ..++++.+||+.++.+..++.                |++++..  ... .....                   ......
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~-------------------~~~~~~  233 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE-------------------FPDEPK  233 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC-------------------CTTCTT
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec-------------------cCCCCe
Confidence            457899999987877776544                7776654  110 01000                   000012


Q ss_pred             ccceEEEecCCCcEEEEEC-----CCCeEEEeCCC------C--eeEEceeccCCCcccCCcceeecCCC-CEEEEeCCC
Q 016318          132 RPLGLRFDKKTGDLYIADA-----YFGLMKVGPEG------G--LATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSST  197 (391)
Q Consensus       132 ~P~gi~~d~~~g~L~V~d~-----~~gl~~~d~~~------g--~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~  197 (391)
                      ...++.+++++..|+++..     ...|+.+|.++      +  ..+.+......      ..-.++++| .+|+.... 
T Consensus       234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~------~~~~~s~dg~~l~~~s~~-  306 (710)
T 2xdw_A          234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG------EYDYVTNEGTVFTFKTNR-  306 (710)
T ss_dssp             CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS------CEEEEEEETTEEEEEECT-
T ss_pred             EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc------EEEEEeccCCEEEEEECC-
Confidence            3457888884444655543     23488888875      4  34444332211      112355665 57776532 


Q ss_pred             cccchhheeeecccCCCceEEEEeCCCCe---EEEeccCCC--CcceEEEccCCCEEEEEeCCC--CeEEEEEe-ccccC
Q 016318          198 NYQRRNFMQLVFSAEDTGRVLKYDPTTKQ---TTVLLRNLQ--FPNGLSLSKDKSFFVFCEGSV--GRLHKYWL-IGEKA  269 (391)
Q Consensus       198 ~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---~~~~~~~~~--~~ngia~~~d~~~l~v~et~~--~~I~~~~~-~g~~~  269 (391)
                                   ..++++|+.+|.++++   .+.+.....  ...++++++++. ++++...+  .+|+++++ .|.  
T Consensus       307 -------------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g~--  370 (710)
T 2xdw_A          307 -------------HSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATGA--  370 (710)
T ss_dssp             -------------TCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTCC--
T ss_pred             -------------CCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCCC--
Confidence                         1235689999988764   344443322  355778875555 66654433  36788876 331  


Q ss_pred             ccceeecccCCCCCceEeCCCCC-EEEEEcC
Q 016318          270 GNLEAFAILPGYPDNVRTNEKGE-FWVAIHC  299 (391)
Q Consensus       270 g~~~~~~~~~g~p~~i~~d~~G~-lwva~~~  299 (391)
                       ..+.+..-.+...++..+++|. ++++..+
T Consensus       371 -~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss  400 (710)
T 2xdw_A          371 -LLKIFPLEVGSVVGYSGQKKDTEIFYQFTS  400 (710)
T ss_dssp             -EEEEECCCSSEEEEEECCTTCSEEEEEEEC
T ss_pred             -EEEecCCCCceEEEEecCCCCCEEEEEEeC
Confidence             1122211123334466677775 5555433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.98  E-value=0.032  Score=51.05  Aligned_cols=115  Identities=11%  Similarity=0.103  Sum_probs=72.5

Q ss_pred             eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc
Q 016318          154 LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR  232 (391)
Q Consensus       154 l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  232 (391)
                      |+.++.++++.+.+         .....+++.|||+ |+++...             .......|+.++.++++.+.+..
T Consensus        45 l~~~d~~~~~~~~l---------~~~~~~~~SpDg~~la~~~~~-------------~~~~~~~l~~~~~~~g~~~~l~~  102 (347)
T 2gop_A           45 IVIENLKNNARRFI---------ENATMPRISPDGKKIAFMRAN-------------EEKKVSEIWVADLETLSSKKILE  102 (347)
T ss_dssp             EEEEETTTCCEEEE---------ESCEEEEECTTSSEEEEEEEE-------------TTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEeCCCCceEEc---------ccCCCeEECCCCCEEEEEEec-------------cCCCcceEEEEECCCCceEEEEc
Confidence            66666777665544         1356678899995 5554321             00123469999998888776654


Q ss_pred             CCCCcceEEEccCCCEEEEEeCC--------------------------CCeEEEEEeccccCccc-eeecccCCCCCce
Q 016318          233 NLQFPNGLSLSKDKSFFVFCEGS--------------------------VGRLHKYWLIGEKAGNL-EAFAILPGYPDNV  285 (391)
Q Consensus       233 ~~~~~ngia~~~d~~~l~v~et~--------------------------~~~I~~~~~~g~~~g~~-~~~~~~~g~p~~i  285 (391)
                      ... ...++++||++.|+++...                          ..+|+++++.+.   +. +.+.. + ....+
T Consensus       103 ~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~---~~~~~l~~-~-~~~~~  176 (347)
T 2gop_A          103 AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE---EVIEEFEK-P-RFSSG  176 (347)
T ss_dssp             ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT---EEEEEEEE-E-TTCEE
T ss_pred             CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC---eEEeeecC-C-Ccccc
Confidence            333 7789999999988877422                          256888887652   22 33332 3 45677


Q ss_pred             EeCCCCCEEEEE
Q 016318          286 RTNEKGEFWVAI  297 (391)
Q Consensus       286 ~~d~~G~lwva~  297 (391)
                      ..+++| ++++.
T Consensus       177 ~~spdg-~~~~~  187 (347)
T 2gop_A          177 IWHRDK-IVVNV  187 (347)
T ss_dssp             EEETTE-EEEEE
T ss_pred             cCCCCe-EEEEE
Confidence            888888 55443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.95  E-value=0.32  Score=48.85  Aligned_cols=43  Identities=12%  Similarity=0.137  Sum_probs=28.4

Q ss_pred             ccceEEEEEC-CCCCEEEEEeCCCCCeeeceeEEEEECCEEEEecC
Q 016318          336 RLHAMAVKYS-PEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSV  380 (391)
Q Consensus       336 ~~~~~v~~~d-~~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs~  380 (391)
                      ...+.+.++| .+|+.+..+....+.....  .+.+.+|++|++..
T Consensus       491 t~dg~l~A~D~~tG~~lW~~~l~~g~~~~P--~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          491 TLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHKGTQYVAIY  534 (599)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEeeCCCCcEecc--EEEEeCCEEEEEEE
Confidence            3456788888 4688888887665543322  23367899998743

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.92  E-value=0.0058  Score=60.32  Aligned_cols=123  Identities=12%  Similarity=0.176  Sum_probs=78.2

Q ss_pred             CcccCCcceeecC-CCCEEEEeCCCcccchhh-eee---ecccCCCceEEEEeCCCC-------eEEEec----------
Q 016318          174 VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNF-MQL---VFSAEDTGRVLKYDPTTK-------QTTVLL----------  231 (391)
Q Consensus       174 ~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~-~~~---~~~~~~~g~l~~~d~~~~-------~~~~~~----------  231 (391)
                      .++..|.++++++ +|.+|++-++..-...+- -.+   .......|.|+++....+       +...+.          
T Consensus       381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~  460 (592)
T 4a9v_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence            4566799999998 789999965432110000 000   011234688998875422       123321          


Q ss_pred             ------------cCCCCcceEEEccCCCEEEEEeCC------------CCeEEEEEeccccCccceeecccC--CCCCce
Q 016318          232 ------------RNLQFPNGLSLSKDKSFFVFCEGS------------VGRLHKYWLIGEKAGNLEAFAILP--GYPDNV  285 (391)
Q Consensus       232 ------------~~~~~~ngia~~~d~~~l~v~et~------------~~~I~~~~~~g~~~g~~~~~~~~~--g~p~~i  285 (391)
                                  ..+..|++|+++++|+ |||++..            ++.+++++   +..++...|...|  ..|.|+
T Consensus       461 ~~~~g~~~~~~~~~fnsPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~d---p~tGel~~fl~~P~~aEpnGi  536 (592)
T 4a9v_A          461 TPKGGSSNITPQNMFNSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCAD---PATGEIRRFMVGPIGCEVTGI  536 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEEC---TTTCCEEEEEECCTTCEEEEE
T ss_pred             ccccCccCccccCccCCCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEe---CCCCeEEEEEeCCCCccccCC
Confidence                        1256799999999998 9994332            34788885   3346667776544  357999


Q ss_pred             EeCCCCC-EEEEEcCC
Q 016318          286 RTNEKGE-FWVAIHCR  300 (391)
Q Consensus       286 ~~d~~G~-lwva~~~~  300 (391)
                      ++++|++ |||+....
T Consensus       537 afSPD~ktLfV~vQHP  552 (592)
T 4a9v_A          537 SFSPDQKTLFVGIQHP  552 (592)
T ss_dssp             EECTTSSEEEEEEEST
T ss_pred             EECCCCCEEEEEEeCC
Confidence            9999998 88987654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.87  E-value=0.088  Score=53.73  Aligned_cols=159  Identities=9%  Similarity=-0.040  Sum_probs=85.9

Q ss_pred             cceEEEccCCCeeEEE-ecC----CEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           71 PESMAFDPLGRGPYTG-VAD----GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~-~~~----g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      -.+++++|||+.+... ..+    ..|+.++...-......                  ...  ...-.++++++++..|
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~--~~~~~~~~wspDg~~l  182 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIE--GGKYATPKWTPDSKGF  182 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBS--CCTTCCCEECTTSSEE
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccC--cccccceEEecCCCEE
Confidence            3467899999965433 323    46777776521110000                  000  0111467888843446


Q ss_pred             EEEECCCC-------------eEEEeCCCCeeE--EceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeec
Q 016318          146 YIADAYFG-------------LMKVGPEGGLAT--SLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       146 ~V~d~~~g-------------l~~~d~~~g~~~--~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~  209 (391)
                      +.+.....             |++++..+++.+  .+....+.  .....++.+++||+ |.++....            
T Consensus       183 ~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~--~~~~~~~~~SpDG~~l~~~~~~~------------  248 (695)
T 2bkl_A          183 YYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD--PTTFLQSDLSRDGKYLFVYILRG------------  248 (695)
T ss_dssp             EEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC--TTCEEEEEECTTSCCEEEEEEET------------
T ss_pred             EEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC--CEEEEEEEECCCCCEEEEEEeCC------------
Confidence            55554332             899998877532  22221111  12345778899996 44443210            


Q ss_pred             ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeC---CCCeEEEEEeccc
Q 016318          210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEG---SVGRLHKYWLIGE  267 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et---~~~~I~~~~~~g~  267 (391)
                        ..+..|+.++..+++.+.+............ ++++ +|+...   .+.+|+++++++.
T Consensus       249 --~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~  305 (695)
T 2bkl_A          249 --WSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP  305 (695)
T ss_dssp             --TTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred             --CCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence              0234677788767777666544433333433 6787 776644   2578999987653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.85  E-value=0.0019  Score=60.96  Aligned_cols=143  Identities=12%  Similarity=0.060  Sum_probs=54.2

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC-
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY-  151 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~-  151 (391)
                      +.+++  ++.+|+++.+|.|+.+|...-+..-.....  .                ....|    +.. ++.+|++... 
T Consensus         4 sP~v~--~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~--~----------------~~s~p----~~~-~g~~~v~~s~d   58 (369)
T 2hz6_A            4 TVTLP--ETLLFVSTLDGSLHAVSKRTGSIKWTLKED--P----------------VLQVP----THV-EEPAFLPDPND   58 (369)
T ss_dssp             ----C--TTEEEEEETTSEEEEEETTTCCEEEEEECC--C----------------SCCCC----------CCEEECTTT
T ss_pred             CCeee--CCEEEEEcCCCEEEEEECCCCCEEEEecCC--C----------------ceecc----eEc-CCCEEEEeCCC
Confidence            44553  455999999999999997611111111000  0                01112    112 4667776444 


Q ss_pred             CCeEEEeCCCCeeE-EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe
Q 016318          152 FGLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL  230 (391)
Q Consensus       152 ~gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  230 (391)
                      ..|+.+|.++|+.. .+.......   .....++..++.+|++..                  ++.++.+|+++|+..--
T Consensus        59 g~l~a~d~~tG~~~w~~~~~~~~~---~~~sp~~~~~~~v~~g~~------------------dg~v~a~D~~tG~~~w~  117 (369)
T 2hz6_A           59 GSLYTLGSKNNEGLTKLPFTIPEL---VQASPCRSSDGILYMGKK------------------QDIWYVIDLLTGEKQQT  117 (369)
T ss_dssp             CCEEEC-----CCSEECSCCHHHH---HTTCSCC-----CCCCEE------------------EEEEEEECCC-------
T ss_pred             CEEEEEECCCCceeeeeeccCccc---cccCceEecCCEEEEEeC------------------CCEEEEEECCCCcEEEE
Confidence            45999999777532 221110000   001112223566776542                  37899999998876432


Q ss_pred             ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          231 LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       231 ~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      ...   ...+..+|+++.+|++. ..+.|+.++.+
T Consensus       118 ~~~---~~~~~~~p~~~~v~~~~-~dg~v~a~d~~  148 (369)
T 2hz6_A          118 LSS---AFADSLSPSTSLLYLGR-TEYTITMYDTK  148 (369)
T ss_dssp             ------------------EEEEE-EEEEEECCCSS
T ss_pred             ecC---CCcccccccCCEEEEEe-cCCEEEEEECC
Confidence            211   11234556777687763 34577777754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.053  Score=53.61  Aligned_cols=153  Identities=9%  Similarity=-0.075  Sum_probs=82.5

Q ss_pred             CccceEEEecC-----CCcEEEEECCC-CeEEEeCCCCeeE-----Ecee---ccCCCcccCCcceeecCCCCEEEEeCC
Q 016318          131 GRPLGLRFDKK-----TGDLYIADAYF-GLMKVGPEGGLAT-----SLAT---EAEGVPLRFTNDLDIDDEGNVYFTDSS  196 (391)
Q Consensus       131 g~P~gi~~d~~-----~g~L~V~d~~~-gl~~~d~~~g~~~-----~~~~---~~~~~~~~~~~~l~~d~~G~ly~td~~  196 (391)
                      +....+++.++     ++.++++.... -|..+|..++...     .+..   ...+. -..+..+++.+++.|..+.  
T Consensus       208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h-~~~v~sv~~s~~~~lasgs--  284 (524)
T 2j04_B          208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA-DSLITTFDFLSPTTVVCGF--  284 (524)
T ss_dssp             CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT-TTCEEEEEESSSSEEEEEE--
T ss_pred             CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC-CCCEEEEEecCCCeEEEEe--
Confidence            55678888873     13555544444 4777777655311     0000   01110 1245667776655433332  


Q ss_pred             CcccchhheeeecccCCCceEEEEeCCCCeE--EEeccCCCCcceE--EEccCC-CEEEEEeCCCCeEEEEEeccccCcc
Q 016318          197 TNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT--TVLLRNLQFPNGL--SLSKDK-SFFVFCEGSVGRLHKYWLIGEKAGN  271 (391)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~~~~~~~ngi--a~~~d~-~~l~v~et~~~~I~~~~~~g~~~g~  271 (391)
                                      .+|.|..||.++++.  ..+...-...+.|  ++++++ + ++++-+..+.|..+++...+.  
T Consensus       285 ----------------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~-~laS~S~D~tvklWD~~~~~~--  345 (524)
T 2j04_B          285 ----------------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT-VVSTVAVDGYFYIFNPKDIAT--  345 (524)
T ss_dssp             ----------------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC-EEEEEETTSEEEEECGGGHHH--
T ss_pred             ----------------CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe-EEEEeccCCeEEEEECCCCCc--
Confidence                            258899999876532  2222223345677  467787 6 556656667787777653211  


Q ss_pred             ceeec-ccC-CCCCceEeCCCCCEEEEEcCCCchhh
Q 016318          272 LEAFA-ILP-GYPDNVRTNEKGEFWVAIHCRRSLYS  305 (391)
Q Consensus       272 ~~~~~-~~~-g~p~~i~~d~~G~lwva~~~~~~~~~  305 (391)
                      ...+. ... +....++++++|..+++......+.+
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l  381 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA  381 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred             ccccccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence            11222 122 12456889999988877666544433

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.78  E-value=0.11  Score=48.76  Aligned_cols=189  Identities=7%  Similarity=-0.017  Sum_probs=92.8

Q ss_pred             cceEEEcc--------CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC
Q 016318           71 PESMAFDP--------LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (391)
Q Consensus        71 Pe~i~~d~--------~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~  141 (391)
                      -.++++.+        +|+++.+++.|+.|..||.. .-......                     ........++|+++
T Consensus       139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~---------------------~~~~~v~~v~~~p~  197 (393)
T 4gq1_A          139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY---------------------PLSSPGISVQFRPS  197 (393)
T ss_dssp             EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE---------------------ECSSCEEEEEEETT
T ss_pred             eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec---------------------CCCCCcEEEEECCC
Confidence            45677865        78888999999999999854 21111111                     01244568899984


Q ss_pred             CCcE-EEEECCCCeEEEeCCCCeeEEceeccCC---------------------CcccCCcceeec-CCCCEEEEeCCCc
Q 016318          142 TGDL-YIADAYFGLMKVGPEGGLATSLATEAEG---------------------VPLRFTNDLDID-DEGNVYFTDSSTN  198 (391)
Q Consensus       142 ~g~L-~V~d~~~gl~~~d~~~g~~~~~~~~~~~---------------------~~~~~~~~l~~d-~~G~ly~td~~~~  198 (391)
                      +.++ ..+....-|..+|..+++...-......                     ........++.. ++|+..++.+.  
T Consensus       198 ~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~--  275 (393)
T 4gq1_A          198 NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK--  275 (393)
T ss_dssp             EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECT--
T ss_pred             CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeC--
Confidence            4344 4444334478888877643221100000                     001123334443 46665555432  


Q ss_pred             ccchhheeeecccCCCceEEEEeCCCCeEEEecc-------------------CCCCcceEEEcc-CCCEEEEEeCCCCe
Q 016318          199 YQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR-------------------NLQFPNGLSLSK-DKSFFVFCEGSVGR  258 (391)
Q Consensus       199 ~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-------------------~~~~~ngia~~~-d~~~l~v~et~~~~  258 (391)
                                     ++.+..||..+++......                   ......+..+++ .++.+.++....+.
T Consensus       276 ---------------d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~  340 (393)
T 4gq1_A          276 ---------------SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL  340 (393)
T ss_dssp             ---------------TSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE
T ss_pred             ---------------CCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCE
Confidence                           4566667765443211110                   011122333333 34445555566678


Q ss_pred             EEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcC
Q 016318          259 LHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHC  299 (391)
Q Consensus       259 I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~  299 (391)
                      |+.++.....  ....+.........++++++|+++++...
T Consensus       341 V~lwd~~~~~--~~~~~~~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          341 IQLINTYEKD--SNSIPIQLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             EEEEETTCTT--CCEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred             EEEEECCCCc--EEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            8888765321  11222222233467899999997765443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.77  E-value=0.41  Score=48.77  Aligned_cols=139  Identities=6%  Similarity=0.002  Sum_probs=70.9

Q ss_pred             eEEEecCCCcEEEEECCC-------------CeEEEeCCCCee--EEceeccCCCcccCCcceeecCCCC-EEEEeCCCc
Q 016318          135 GLRFDKKTGDLYIADAYF-------------GLMKVGPEGGLA--TSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTN  198 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~-------------gl~~~d~~~g~~--~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~  198 (391)
                      +++++ ++..|+++....             .|++.+..++..  +.+... ......+..++.+++||+ |+++.++  
T Consensus       179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~--  254 (693)
T 3iuj_A          179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAAN--  254 (693)
T ss_dssp             CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEES--
T ss_pred             cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEcc--
Confidence            34566 466676665432             277777665532  222111 110012234677889996 4454422  


Q ss_pred             ccchhheeeecccCCCceEEEEeCCCC--eEEEeccCCCCcceEEEccCCCEEEEEeCC---CCeEEEEEeccccCccce
Q 016318          199 YQRRNFMQLVFSAEDTGRVLKYDPTTK--QTTVLLRNLQFPNGLSLSKDKSFFVFCEGS---VGRLHKYWLIGEKAGNLE  273 (391)
Q Consensus       199 ~~~~~~~~~~~~~~~~g~l~~~d~~~~--~~~~~~~~~~~~ngia~~~d~~~l~v~et~---~~~I~~~~~~g~~~g~~~  273 (391)
                                  ......++.+|.+++  +.+.+......-... ++++++.+|+....   +.+|+++++++....+.+
T Consensus       255 ------------~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~  321 (693)
T 3iuj_A          255 ------------STSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR  321 (693)
T ss_dssp             ------------SSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred             ------------CCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE
Confidence                        111347888887665  455554433222222 56777777776433   368999998764332233


Q ss_pred             eecccCCCCCceEeCCCCC
Q 016318          274 AFAILPGYPDNVRTNEKGE  292 (391)
Q Consensus       274 ~~~~~~g~p~~i~~d~~G~  292 (391)
                      .+..  ...+.+.++.+|+
T Consensus       322 ~l~~--~~~~~~~~s~~g~  338 (693)
T 3iuj_A          322 DLIP--ERQQVLTVHSGSG  338 (693)
T ss_dssp             EEEC--CCSSCEEEEEETT
T ss_pred             EEec--CCCCEEEEEEECC
Confidence            3332  2122234455555

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.76  E-value=0.23  Score=50.62  Aligned_cols=83  Identities=19%  Similarity=0.188  Sum_probs=49.7

Q ss_pred             CceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC--CCCceEeCCCC
Q 016318          214 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG--YPDNVRTNEKG  291 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g--~p~~i~~d~~G  291 (391)
                      .|.|..+|+.+++..--.......++..+..++..+|++ +..+.++.++.+.   |+...-..++.  .-.-+....+|
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~t---G~~lw~~~~~~~~~~~p~~y~~~G  531 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAAT---GEKLWEAPTGTGVVAAPSTYMVDG  531 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTT---CCEEEEEECSSCCCSCCEEEEETT
T ss_pred             ccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE-CCCCcEEEEECCC---CceeeeeeCCCCcccCCEEEEeCC
Confidence            478999999999864332222234566677777778877 6778999998653   22111112222  11124445788


Q ss_pred             CEEEEEcCC
Q 016318          292 EFWVAIHCR  300 (391)
Q Consensus       292 ~lwva~~~~  300 (391)
                      +.|++...+
T Consensus       532 ~~~v~~~~G  540 (677)
T 1kb0_A          532 RQYVSVAVG  540 (677)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            888876544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.66  E-value=0.2  Score=51.56  Aligned_cols=116  Identities=15%  Similarity=0.119  Sum_probs=65.2

Q ss_pred             eEEEecCCCcEEEEECCC--------------CeEEEeCCCCee--EEceeccCCCcccCCcceeecCCCC-EEEEeCCC
Q 016318          135 GLRFDKKTGDLYIADAYF--------------GLMKVGPEGGLA--TSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSST  197 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~--------------gl~~~d~~~g~~--~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~  197 (391)
                      +++++++ ..|+++....              .|++.+..++..  +.+....+.  ..+..++.+++||+ |.++....
T Consensus       213 ~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~--~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          213 GLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL--PKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             CCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC--TTCEEEEEECTTSCEEEEEEECT
T ss_pred             cEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC--CeEEEEEEECCCCCEEEEEEEcc
Confidence            4567774 6666664332              277788766642  122211111  11345778899996 54443210


Q ss_pred             cccchhheeeecccCCCceEEEEeCCCC--e-EEEeccCCCCcceEEEccCCCEEEEEeCC---CCeEEEEEeccc
Q 016318          198 NYQRRNFMQLVFSAEDTGRVLKYDPTTK--Q-TTVLLRNLQFPNGLSLSKDKSFFVFCEGS---VGRLHKYWLIGE  267 (391)
Q Consensus       198 ~~~~~~~~~~~~~~~~~g~l~~~d~~~~--~-~~~~~~~~~~~ngia~~~d~~~l~v~et~---~~~I~~~~~~g~  267 (391)
                                   ...+..|+.+|.+++  + .+.+.......... +++|++.+++....   +.+|+++++++.
T Consensus       290 -------------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          290 -------------TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             -------------TCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             -------------CCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence                         012357888888776  5 55555433222233 45888888877432   457999987653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.53  E-value=0.34  Score=49.32  Aligned_cols=180  Identities=12%  Similarity=0.036  Sum_probs=96.1

Q ss_pred             ceEEEccCCCeeEEEecCCE-------------EEEEeCC--ce--eEEEeecCCCcccCCCCCCccccccccCccCccc
Q 016318           72 ESMAFDPLGRGPYTGVADGR-------------ILFWDGL--KW--TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL  134 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~-------------I~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~  134 (391)
                      .++++.+||+.++.+..+..             |++++..  ..  ..+...                    ......-.
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~--------------------~~~~~~~~  230 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER--------------------TGDPTTFL  230 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC--------------------CCCTTCEE
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec--------------------CCCCEEEE
Confidence            57899999997777766543             8887654  11  111100                    00012335


Q ss_pred             eEEEecCCCcEEEEECCC----CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecc
Q 016318          135 GLRFDKKTGDLYIADAYF----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~----gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~  210 (391)
                      ++.+++++..|.++....    .|+.++..++..+.+......     ...... ++|.+|+....              
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~-----~~~~~~-~~g~l~~~s~~--------------  290 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA-----KYEVHA-WKDRFYVLTDE--------------  290 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC-----CEEEEE-ETTEEEEEECT--------------
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc-----eEEEEe-cCCcEEEEECC--------------
Confidence            778888444465544333    488888777766666543221     122222 45557776531              


Q ss_pred             cCCCceEEEEeCCCCe---EEEeccC--CCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccC--CC
Q 016318          211 AEDTGRVLKYDPTTKQ---TTVLLRN--LQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILP--GY  281 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~---~~~~~~~--~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~--g~  281 (391)
                      ..++++|+.+|.++++   .+.+...  -....+++++ ++. ++++...+  .+|+.++++|.   ..+.+ .++  +.
T Consensus       291 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~-lv~~~~~dg~~~l~~~~~~g~---~~~~l-~~~~~~~  364 (695)
T 2bkl_A          291 GAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH-LSLEYLKDATSEVRVATLKGK---PVRTV-QLPGVGA  364 (695)
T ss_dssp             TCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE-EEEEEEETTEEEEEEEETTCC---EEEEC-CCSSSSE
T ss_pred             CCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE-EEEEEEECCEEEEEEEeCCCC---eeEEe-cCCCCeE
Confidence            1245789999987765   2444322  2234567776 444 66664433  46777765542   11111 122  23


Q ss_pred             CCceEeCCCCC-EEEEE
Q 016318          282 PDNVRTNEKGE-FWVAI  297 (391)
Q Consensus       282 p~~i~~d~~G~-lwva~  297 (391)
                      ..++..+++|. ++++.
T Consensus       365 v~~~~~s~d~~~l~~~~  381 (695)
T 2bkl_A          365 ASNLMGLEDLDDAYYVF  381 (695)
T ss_dssp             ECCCBSCTTCSEEEEEE
T ss_pred             EEEeecCCCCCEEEEEE
Confidence            34456667775 55443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.49  E-value=0.48  Score=47.32  Aligned_cols=43  Identities=21%  Similarity=0.287  Sum_probs=28.5

Q ss_pred             ccceEEEEECC-CCCEEEEEeCCCCCeeeceeEEEEECCEEEEecC
Q 016318          336 RLHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSV  380 (391)
Q Consensus       336 ~~~~~v~~~d~-~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs~  380 (391)
                      ...+.+.++|. +|+++..+..+.+.....  .+.+.+|++|++..
T Consensus       504 ~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P--~~y~~~G~qYv~~~  547 (582)
T 1flg_A          504 TGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGEQYLGVT  547 (582)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEE
T ss_pred             CCCCcEEEEECCCCCEEEEecCCCCcccCc--eEEEECCEEEEEEE
Confidence            34567888884 789888887765543222  22357899998843

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.48  E-value=0.03  Score=55.90  Aligned_cols=124  Identities=22%  Similarity=0.384  Sum_probs=75.3

Q ss_pred             cccccCcceEEEcc-CCCeeEEEec----------------------CCEEEEEeCC---------ceeEEEeecCCCcc
Q 016318           65 LNQIQGPESMAFDP-LGRGPYTGVA----------------------DGRILFWDGL---------KWTDFAFTSNNRSE  112 (391)
Q Consensus        65 ~~~~~gPe~i~~d~-~G~~ly~~~~----------------------~g~I~~~~~~---------~~~~~~~~~~~~~~  112 (391)
                      ...+..||++.+++ +|. +|++..                      .|.|+++.++         .|..+.........
T Consensus       380 AT~f~RpEgi~~~p~~g~-vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~  458 (592)
T 3zwu_A          380 ATRMDRPEWIVVSPKDGQ-VYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVH  458 (592)
T ss_dssp             CCCEECEEEEEECTTTCC-EEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTS
T ss_pred             eEEEeccceeEEcCCCCE-EEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccc
Confidence            45688999999996 566 665532                      3789999654         23344322211000


Q ss_pred             cCCCCCCccccccccCccCccceEEEecCCCcEEEEECC-------------CCeEEEeCCCCeeEEceeccCCCcccCC
Q 016318          113 LCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY-------------FGLMKVGPEGGLATSLATEAEGVPLRFT  179 (391)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~-------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~  179 (391)
                      .-... ..............|-+|+||+ .|+|||+.-.             +.++..++.+++++.+.....+   .-.
T Consensus       459 ~~~~~-~~~~~~~~~~~f~~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g---aE~  533 (592)
T 3zwu_A          459 AGTPK-GGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG---CEV  533 (592)
T ss_dssp             TTSGG-GCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT---CEE
T ss_pred             ccccc-ccccccCCCCCccCCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC---ccC
Confidence            00000 0000001122356799999999 8999998643             2378889999999888754333   356


Q ss_pred             cceeecCCCC-EEEEe
Q 016318          180 NDLDIDDEGN-VYFTD  194 (391)
Q Consensus       180 ~~l~~d~~G~-ly~td  194 (391)
                      .++++++||+ ||+.-
T Consensus       534 TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          534 TGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             cCeeECCCCCEEEEEE
Confidence            7889999984 66653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.35  E-value=0.44  Score=44.22  Aligned_cols=151  Identities=16%  Similarity=0.143  Sum_probs=78.9

Q ss_pred             EEEcc---CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           74 MAFDP---LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        74 i~~d~---~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      +++.+   +|..+.+++.|+.|..||.+.-+.+.......                 ........++|++ ++.+.++..
T Consensus       184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~-----------------~~v~~v~~vafSp-dG~~lvs~s  245 (356)
T 2w18_A          184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD-----------------SYQASVCHKAYSE-MGLLFIVLS  245 (356)
T ss_dssp             EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--------------------CCCEEEEEEE-TTEEEEEEC
T ss_pred             EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC-----------------cceeeeEEEEECC-CCCEEEEec
Confidence            44555   67877888999999999987222221111000                 0011234567888 666654321


Q ss_pred             ------------C-CCeEEEeCCCCeeEEcee-c-cCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318          151 ------------Y-FGLMKVGPEGGLATSLAT-E-AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       151 ------------~-~gl~~~d~~~g~~~~~~~-~-~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                                  . .-+..+|+.+++...... . .++....   -+..+.+|.+.++.+                 .++
T Consensus       246 ~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~---~lsg~~sg~~lASgS-----------------~Dg  305 (356)
T 2w18_A          246 HPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR---FLEGDVKDHCAAAIL-----------------TSG  305 (356)
T ss_dssp             ------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC---EEEEEEETTEEEEEE-----------------TTS
T ss_pred             cCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce---eEccccCCCEEEEEc-----------------CCC
Confidence                        1 125556777775432110 0 1111100   011122233434432                 357


Q ss_pred             eEEEEeCCCCeEEEeccC-CCCcc-eEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          216 RVLKYDPTTKQTTVLLRN-LQFPN-GLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~~~-~~~~n-gia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                      .|..+|..+++......+ ..... .++++|||++|+ +-...+.|+.++
T Consensus       306 TIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La-SGS~D~TIklWd  354 (356)
T 2w18_A          306 TIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL-AGQKDGNIFVYH  354 (356)
T ss_dssp             CEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE-EECTTSCEEEEE
T ss_pred             cEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE-EEECCCcEEEec
Confidence            899999999986554433 23344 589999999554 446666776665

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.33  E-value=0.24  Score=50.61  Aligned_cols=43  Identities=14%  Similarity=0.260  Sum_probs=28.3

Q ss_pred             ccceEEEEECC-CCCEEEEEeCCCCCeeeceeEEEEECCEEEEecC
Q 016318          336 RLHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSV  380 (391)
Q Consensus       336 ~~~~~v~~~d~-~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs~  380 (391)
                      ...+.+.++|. +|+.+..+....+.....+  ..+.+|+.|++..
T Consensus       493 t~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~--ty~~~G~qyv~~~  536 (689)
T 1yiq_A          493 SADGRVIAYAADTGEKLWEQPAASGVMAAPV--TYSVDGEQYVTFM  536 (689)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEE
T ss_pred             CCCCcEEEEECCCCccceeeeCCCCcccCce--EEEECCEEEEEEE
Confidence            44567888884 6888888876655432222  2267899998743

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.33  E-value=0.69  Score=46.05  Aligned_cols=84  Identities=14%  Similarity=0.042  Sum_probs=46.2

Q ss_pred             CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCC--ceEeCCC
Q 016318          213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD--NVRTNEK  290 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~--~i~~d~~  290 (391)
                      ..|.|+.+|+.+++..--........+..+...+..+|++ +..+.|+.++.+.   |+..--..++....  -+....+
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g-~~dg~l~a~D~~t---G~~lw~~~~~~~~~~~p~~~~~~  517 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYA-TLDGYLKALDNKD---GKELWNFKMPSGGIGSPMTYSFK  517 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEE-CTTSEEEEEETTT---CCEEEEEECSSCCCSCCEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEE-cCCCeEEEEECCC---CCEEEEEeCCCCcEeeeEEEEEC
Confidence            4589999999998764322211222333333345558876 5678899998543   22211112222111  1333468


Q ss_pred             CCEEEEEcCC
Q 016318          291 GEFWVAIHCR  300 (391)
Q Consensus       291 G~lwva~~~~  300 (391)
                      |++||+...+
T Consensus       518 G~~yv~~~~G  527 (571)
T 2ad6_A          518 GKQYIGSMYG  527 (571)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEECC
Confidence            8999987654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.20  E-value=0.28  Score=49.86  Aligned_cols=43  Identities=21%  Similarity=0.308  Sum_probs=25.8

Q ss_pred             ccceEEEEECC-CCCEEEEEeCCCCCeeeceeEEEEECCEEEEecC
Q 016318          336 RLHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSV  380 (391)
Q Consensus       336 ~~~~~v~~~d~-~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs~  380 (391)
                      ...+.+.++|. +|+++..+....+.....+  ..+.+|++|++..
T Consensus       476 ~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~--~~~~~G~~yva~~  519 (668)
T 1kv9_A          476 TAAGQMHAYSADKGEALWQFEAQSGIVAAPM--TFELAGRQYVAIM  519 (668)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEE
T ss_pred             CCcccchhhhhhcChhheEecCCCCcccCce--EEEECCEEEEEEE
Confidence            34466777774 5888877766544322222  2267889888643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.17  E-value=0.61  Score=47.52  Aligned_cols=111  Identities=14%  Similarity=0.162  Sum_probs=63.5

Q ss_pred             ceEEEecCCCcEEEEECC----CCeEEEeCCCC--eeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhhee
Q 016318          134 LGLRFDKKTGDLYIADAY----FGLMKVGPEGG--LATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~----~gl~~~d~~~g--~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~  206 (391)
                      .++.+++++..|++....    ..|+.+|.+++  ..+.+....+.     .... +++ .+.+||.+..          
T Consensus       237 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~-----~~~~-~~~~g~~l~~~t~~----------  300 (693)
T 3iuj_A          237 VGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA-----DVSL-VDNKGSTLYLLTNR----------  300 (693)
T ss_dssp             EEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS-----CEEE-EEEETTEEEEEECT----------
T ss_pred             EEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc-----eEEE-EeccCCEEEEEECC----------
Confidence            467788843345554321    24888887665  44554332211     1111 344 4468877632          


Q ss_pred             eecccCCCceEEEEeCCCCeE---EEeccCCCCcceEEEccCCCEEEEEeCCCC--eEEEEEecc
Q 016318          207 LVFSAEDTGRVLKYDPTTKQT---TVLLRNLQFPNGLSLSKDKSFFVFCEGSVG--RLHKYWLIG  266 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~~~~---~~~~~~~~~~ngia~~~d~~~l~v~et~~~--~I~~~~~~g  266 (391)
                          ..++++|+.+|.++++.   +.+...-...  +.++++++.|+++...+.  +|+.++++|
T Consensus       301 ----~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          301 ----DAPNRRLVTVDAANPGPAHWRDLIPERQQV--LTVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             ----TCTTCEEEEEETTSCCGGGCEEEECCCSSC--EEEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             ----CCCCCEEEEEeCCCCCccccEEEecCCCCE--EEEEEECCEEEEEEEECCeeEEEEEECCC
Confidence                12357899999887653   4444332222  277888988877755443  688887665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.11  E-value=0.38  Score=49.41  Aligned_cols=125  Identities=11%  Similarity=0.076  Sum_probs=68.7

Q ss_pred             eEEEeCC---CCeeEEceeccC---CCcccCCcceeecCCCCE-EEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318          154 LMKVGPE---GGLATSLATEAE---GVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       154 l~~~d~~---~g~~~~~~~~~~---~~~~~~~~~l~~d~~G~l-y~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  226 (391)
                      |++.+..   ++..+.+.+...   +. .....++++.+||+. .++.+.             .+.....|+.+|.++++
T Consensus       135 l~~~~~~~~~~~~~~~lld~~~l~~~~-~~~~~~~~~SPDG~~la~~~~~-------------~G~e~~~i~v~dl~tg~  200 (741)
T 1yr2_A          135 LLVRPADAPVGTKGRVLLDPNTWAKDG-ATALDAWAASDDGRLLAYSVQD-------------GGSDWRTVKFVGVADGK  200 (741)
T ss_dssp             EEEEETTSCTTCCCEEEECGGGCC-----EEEEEEEECTTSSEEEEEEEE-------------TTCSEEEEEEEETTTCC
T ss_pred             EEEEcCCccCCCCCEEEECHHHhccCC-CEEEEeEEECCCCCEEEEEEcC-------------CCCceEEEEEEECCCCC
Confidence            6888776   666565533211   11 123456788999963 333211             01112468999999988


Q ss_pred             EEEeccCCCCcceEEEccCCCEEEEEeCC-------------CCeEEEEEeccccCccceeecccCC---CCCceEeCCC
Q 016318          227 TTVLLRNLQFPNGLSLSKDKSFFVFCEGS-------------VGRLHKYWLIGEKAGNLEAFAILPG---YPDNVRTNEK  290 (391)
Q Consensus       227 ~~~~~~~~~~~ngia~~~d~~~l~v~et~-------------~~~I~~~~~~g~~~g~~~~~~~~~g---~p~~i~~d~~  290 (391)
                      .......-....+++++|| +.|+++...             ..+|+++++.++......++. .+.   ...++.++++
T Consensus       201 ~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~-~~~~~~~~~~~~~SpD  278 (741)
T 1yr2_A          201 PLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA-TPELPKRGHGASVSSD  278 (741)
T ss_dssp             EEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC-CTTCTTCEEEEEECTT
T ss_pred             CCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec-cCCCCeEEEEEEECCC
Confidence            6543111111247899999 878877543             235888887543221122332 222   2236778999


Q ss_pred             CCEE
Q 016318          291 GEFW  294 (391)
Q Consensus       291 G~lw  294 (391)
                      |+..
T Consensus       279 G~~l  282 (741)
T 1yr2_A          279 GRWV  282 (741)
T ss_dssp             SCEE
T ss_pred             CCEE
Confidence            9733

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.90  E-value=0.53  Score=47.85  Aligned_cols=82  Identities=20%  Similarity=0.258  Sum_probs=47.4

Q ss_pred             CceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCC--CCCceEeCCC
Q 016318          214 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPG--YPDNVRTNEK  290 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g--~p~~i~~d~~  290 (391)
                      .|.|..+|+.+|+..--........+..+...+..+|++ +..+.++.++.+.   |+. .+. .++.  ...-+....+
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~t---G~~-l~~~~~~~~~~~~p~~~~~~  511 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADK---GEA-LWQFEAQSGIVAAPMTFELA  511 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTT---CCE-EEEEECSSCCCSCCEEEEET
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhc---Chh-heEecCCCCcccCceEEEEC
Confidence            388999999999864322222233444555567768777 6678899998542   221 111 1221  1112443467


Q ss_pred             CCEEEEEcCC
Q 016318          291 GEFWVAIHCR  300 (391)
Q Consensus       291 G~lwva~~~~  300 (391)
                      |++|++...+
T Consensus       512 G~~yva~~~G  521 (668)
T 1kv9_A          512 GRQYVAIMAG  521 (668)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            8889886653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.84  E-value=1.6  Score=43.02  Aligned_cols=136  Identities=15%  Similarity=0.087  Sum_probs=79.2

Q ss_pred             eEEEEeCCC----C-eEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc------cC--ccceeeccc-CC-
Q 016318          216 RVLKYDPTT----K-QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE------KA--GNLEAFAIL-PG-  280 (391)
Q Consensus       216 ~l~~~d~~~----~-~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~------~~--g~~~~~~~~-~g-  280 (391)
                      ++-.+|...    + ....+......|.|+-++|||++++++.-....+..++.+--      +.  -+..+.+.. .| 
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            455666654    1 233344455689999999999999999888899999987621      11  011112221 13 


Q ss_pred             CCCceEeCCCCCEEEEEcCCCchhhhhh----hcCcc--ceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEE
Q 016318          281 YPDNVRTNEKGEFWVAIHCRRSLYSHLM----ALYPK--IRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVL  354 (391)
Q Consensus       281 ~p~~i~~d~~G~lwva~~~~~~~~~~~l----~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~  354 (391)
                      .|-..++|++|+.|.++.-...+..|-+    ..|..  ...++.++++--..-......+..      .+++|+.+.++
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get------~~~dGk~lv~l  452 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCET------NEADGKWLVAL  452 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTS------TTCCSCEEEEE
T ss_pred             cccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCcc------CCCCccEEEEe
Confidence            4778899999999999876655543322    22211  234555665543322211111111      24678888777


Q ss_pred             eCC
Q 016318          355 EDS  357 (391)
Q Consensus       355 ~~~  357 (391)
                      +..
T Consensus       453 nK~  455 (638)
T 3sbq_A          453 SKF  455 (638)
T ss_dssp             ESC
T ss_pred             ccc
Confidence            653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.84  E-value=1.1  Score=45.60  Aligned_cols=82  Identities=20%  Similarity=0.284  Sum_probs=48.5

Q ss_pred             CceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCC--CCCceEeCCC
Q 016318          214 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPG--YPDNVRTNEK  290 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g--~p~~i~~d~~  290 (391)
                      .|.|..+|++||+..--.......++-.+...+..++++ +..+.|+.++.+.   |+ +.+. .++.  ...-+....+
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~t---G~-~lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADT---GE-KLWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTT---CC-EEEEEECSSCCCSCCEEEEET
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCC---Cc-cceeeeCCCCcccCceEEEEC
Confidence            378999999999864332211122333555566767766 6678999998653   32 2221 2331  1122555678


Q ss_pred             CCEEEEEcCC
Q 016318          291 GEFWVAIHCR  300 (391)
Q Consensus       291 G~lwva~~~~  300 (391)
                      |+.||+...+
T Consensus       529 G~qyv~~~~G  538 (689)
T 1yiq_A          529 GEQYVTFMAG  538 (689)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            9999886643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.76  E-value=1.8  Score=43.60  Aligned_cols=58  Identities=10%  Similarity=0.050  Sum_probs=37.0

Q ss_pred             ceEEEecCCCcEEEEECCC--CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeC
Q 016318          134 LGLRFDKKTGDLYIADAYF--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS  195 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~--gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~  195 (391)
                      .+.++.. +++|||.-...  .+.++|+.+++.+.+.....   .+.-...++-++|+||+...
T Consensus       246 ~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~---~R~~~s~~~~~dg~iyv~GG  305 (656)
T 1k3i_A          246 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV---ARGYQSSATMSDGRVFTIGG  305 (656)
T ss_dssp             CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS---CCSSCEEEECTTSCEEEECC
T ss_pred             ccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCc---cccccceEEecCCeEEEEeC
Confidence            3566665 78999975432  49999999888776642111   12223445556888888753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.57  E-value=2.1  Score=42.57  Aligned_cols=83  Identities=11%  Similarity=0.074  Sum_probs=46.1

Q ss_pred             CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCC--ceEeCC
Q 016318          213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPD--NVRTNE  289 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~--~i~~d~  289 (391)
                      ..|.|..+|+.+|+..--.......++-.+.-.+..+|++ +..+.++.++.+.   |+ +.+. .+++...  -+....
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-~~dg~l~A~D~~t---G~-~lW~~~~~~g~~a~P~~y~~  538 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTG-TGDGYFKAFDAKS---GK-ELWKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEE-CTTSEEEEEETTT---CC-EEEEEECSSCCCSCCEEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEE-CCCCcEEEEECCC---CC-EEEEecCCCCcccCceEEEE
Confidence            4688999999999764222111112222222245557776 5677899888542   22 2221 2332111  255557


Q ss_pred             CCCEEEEEcCC
Q 016318          290 KGEFWVAIHCR  300 (391)
Q Consensus       290 ~G~lwva~~~~  300 (391)
                      +|+.||+...+
T Consensus       539 ~G~qYv~~~~G  549 (582)
T 1flg_A          539 DGEQYLGVTVG  549 (582)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEcc
Confidence            89999987654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=94.92  E-value=2.4  Score=39.44  Aligned_cols=149  Identities=6%  Similarity=-0.130  Sum_probs=78.2

Q ss_pred             cCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEec-------CCCcEEEE
Q 016318           78 PLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK-------KTGDLYIA  148 (391)
Q Consensus        78 ~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~-------~~g~L~V~  148 (391)
                      ++++.+.++..|+.|..|+..  .........                 ......+....++|.+       .++++++.
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~-----------------~~~gH~~~v~~v~~~p~~~~~~~~d~~~las  161 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQHVLG-----------------GKSGHHNFVNDIDIADVYSADNRLAEQVIAS  161 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEEEEC-----------------TTTSCSSCEEEEEEEEEECTTCSEEEEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceeeeec-----------------ccCCCCCceEEEEEccccccccCCCCCEEEE
Confidence            345557778888888887654  111111110                 1111235567888864       13556665


Q ss_pred             ECCCC-eEEEeCCCCee-EEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          149 DAYFG-LMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       149 d~~~g-l~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      ....+ |...|..++.. ..+... .    .....+++.|++. +.++.+.                 ++.+..||..++
T Consensus       162 ~s~D~tv~~Wd~~~~~~~~~~~~~-~----~~v~~v~~~p~~~~~l~~~~~-----------------d~~v~~wd~~t~  219 (393)
T 4gq1_A          162 VGDDCTLIIWRLTDEGPILAGYPL-S----SPGISVQFRPSNPNQLIVGER-----------------NGNIRIFDWTLN  219 (393)
T ss_dssp             EETTSEEEEEEEETTEEEEEEEEC-S----SCEEEEEEETTEEEEEEEEET-----------------TSEEEEEETTCC
T ss_pred             EECCCeEEEEECCCCceeeeecCC-C----CCcEEEEECCCCCceEEecCC-----------------CCEEEEEECCCC
Confidence            44444 77777655432 222211 1    2356788888774 4444432                 467788887766


Q ss_pred             eEEEecc--------------------------CCCCcceEEEc-cCCCEEEEEeCCCCeEEEEEecc
Q 016318          226 QTTVLLR--------------------------NLQFPNGLSLS-KDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       226 ~~~~~~~--------------------------~~~~~ngia~~-~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      +......                          .......++++ +|++.++ +-...+.+..+++..
T Consensus       220 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~-s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          220 LSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGIL-AMCKSGAWLRWNLFA  286 (393)
T ss_dssp             C----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEE-EECTTSEEEEEEC--
T ss_pred             cccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEE-EEeCCCCEEEEECcc
Confidence            5322110                          01123456665 7888554 446677888877653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=94.60  E-value=2.8  Score=38.79  Aligned_cols=151  Identities=7%  Similarity=-0.045  Sum_probs=76.1

Q ss_pred             CCcEEEEECCCC-eEEEeCCCCee-EEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          142 TGDLYIADAYFG-LMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       142 ~g~L~V~d~~~g-l~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      ++.++++.+..+ |...|.++|+. +.+...  .........+++.++|.+.++.+...     ....+..+..++.+..
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~--~~~v~~v~~vafSpdG~~lvs~s~~~-----~~w~laSGs~D~tIkl  264 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHID--DSYQASVCHKAYSEMGLLFIVLSHPC-----AKESESLRSPVFQLIV  264 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECC--C---CCCEEEEEEETTEEEEEEC-----------------CCEEEEE
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCC--CcceeeeEEEEECCCCCEEEEeccCC-----CcceeeccCCCcEEEE
Confidence            567888766655 77789998864 333211  11123556678999998777653210     0123445666778888


Q ss_pred             EeCCCCeEEEecc----CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCC-ceEeCCCCCEE
Q 016318          220 YDPTTKQTTVLLR----NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD-NVRTNEKGEFW  294 (391)
Q Consensus       220 ~d~~~~~~~~~~~----~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~-~i~~d~~G~lw  294 (391)
                      +|+.+++......    ......-+..+.++. +.++-+..+.|..+++...+  ....+......+. .++++++|.+.
T Consensus       265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~DgTIkIWDl~tGk--~l~tL~gH~~~vvs~vafSPDG~~L  341 (356)
T 2w18_A          265 INPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSGTIAIWDLLLGQ--CTALLPPVSDQHWSFVKWSGTDSHL  341 (356)
T ss_dssp             EETTTTEEEEEEEECCCTTCCCCEEEEEEETT-EEEEEETTSCEEEEETTTCS--EEEEECCC--CCCCEEEECSSSSEE
T ss_pred             EECCCCEEEEEEEeeccCCCcceeEccccCCC-EEEEEcCCCcEEEEECCCCc--EEEEecCCCCCeEEEEEECCCCCEE
Confidence            9999887543220    000000111222244 44554456677777765321  1122221111233 37899999977


Q ss_pred             EEEcCCCc
Q 016318          295 VAIHCRRS  302 (391)
Q Consensus       295 va~~~~~~  302 (391)
                      ++....+.
T Consensus       342 aSGS~D~T  349 (356)
T 2w18_A          342 LAGQKDGN  349 (356)
T ss_dssp             EEECTTSC
T ss_pred             EEEECCCc
Confidence            76655444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.05  E-value=5.4  Score=39.83  Aligned_cols=82  Identities=16%  Similarity=0.148  Sum_probs=45.7

Q ss_pred             CCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCC--CCceEeC
Q 016318          213 DTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGY--PDNVRTN  288 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~--p~~i~~d  288 (391)
                      ..|.|..+|+.+++..--. .......|. +.-.+..+|++ +..+.|+.++.+.   |+ +.+. .++..  -.-+...
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~-~~tagg~vf~g-t~dg~l~A~D~~t---G~-~lW~~~l~~g~~~~P~~y~  524 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGGT-MATAGDLVFYG-TLDGYLKARDSDT---GD-LLWKFKIPSGAIGYPMTYT  524 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBC-EEETTTEEEEE-CTTSEEEEEETTT---CC-EEEEEECSSCCCSCCEEEE
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCcc-eEecCCEEEEE-CCCCeEEEEECCC---CC-EEEEeeCCCCcEeccEEEE
Confidence            4589999999999764322 121111232 22345557776 5677899898543   22 2222 23321  1114445


Q ss_pred             CCCCEEEEEcCC
Q 016318          289 EKGEFWVAIHCR  300 (391)
Q Consensus       289 ~~G~lwva~~~~  300 (391)
                      .+|+.||+...+
T Consensus       525 ~~G~qyv~~~~G  536 (599)
T 1w6s_A          525 HKGTQYVAIYYG  536 (599)
T ss_dssp             ETTEEEEEEEEC
T ss_pred             eCCEEEEEEEcc
Confidence            689999887654

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=93.76  E-value=7.2  Score=40.30  Aligned_cols=159  Identities=12%  Similarity=0.040  Sum_probs=84.8

Q ss_pred             CcceEEEccC-CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-CCcE
Q 016318           70 GPESMAFDPL-GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGDL  145 (391)
Q Consensus        70 gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-~g~L  145 (391)
                      .-.+|++++. .+.+|+++..+.|+|-+..  .|+.+.... .               ...-.......|++++. .+.+
T Consensus        16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~-~---------------~~~~~~~~i~~ia~dp~~~~~i   79 (789)
T 1sqj_A           16 YITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFI-E---------------AQDMNIMGTESIALDPNNPDRL   79 (789)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTC-C---------------GGGGGGCSEEEEEEETTEEEEE
T ss_pred             cEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCC-C---------------cccccCCceeEEEECCCCCCEE
Confidence            3457888874 3459999988999998755  566542100 0               00001223567888863 3578


Q ss_pred             EEEECC------CCeEEEeCCCCeeEEceeccC--C-Ccc-cCCcceeecCC--CCEEEEeCCCcccchhheeeecccCC
Q 016318          146 YIADAY------FGLMKVGPEGGLATSLATEAE--G-VPL-RFTNDLDIDDE--GNVYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       146 ~V~d~~------~gl~~~d~~~g~~~~~~~~~~--~-~~~-~~~~~l~~d~~--G~ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      |++...      .+|++-+-.+...+.+.....  + .+. .....+++++.  +.+|+...                  
T Consensus        80 ~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~------------------  141 (789)
T 1sqj_A           80 YLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR------------------  141 (789)
T ss_dssp             EEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECS------------------
T ss_pred             EEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEec------------------
Confidence            998643      346666544445555432211  0 000 12346888763  46777652                  


Q ss_pred             CceEEEEeCCCCeEEEeccCC------CCcceEEEcc-CCCEEEEEeCCCCeEEEE
Q 016318          214 TGRVLKYDPTTKQTTVLLRNL------QFPNGLSLSK-DKSFFVFCEGSVGRLHKY  262 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~~~~------~~~ngia~~~-d~~~l~v~et~~~~I~~~  262 (391)
                      .++|++-+-.....+.+....      .....|+++| +.+.+|++......|++-
T Consensus       142 ~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~S  197 (789)
T 1sqj_A          142 TEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYVT  197 (789)
T ss_dssp             SSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEEE
T ss_pred             cCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEEE
Confidence            145666554444444443210      1223566776 345688875433567664

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=93.71  E-value=7.2  Score=40.12  Aligned_cols=162  Identities=12%  Similarity=0.103  Sum_probs=84.4

Q ss_pred             CcceEEEccCC-CeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCcccccccc-CccCccceEEEecC-CCc
Q 016318           70 GPESMAFDPLG-RGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNE-HICGRPLGLRFDKK-TGD  144 (391)
Q Consensus        70 gPe~i~~d~~G-~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~P~gi~~d~~-~g~  144 (391)
                      .-.+|++++.+ +.+|+++..|+|+|-...  .|+.+......            ..+..+ ........|++|+. .+.
T Consensus        22 ~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~------------~~~~~~~~~~~~~~~ia~dp~~~~~   89 (763)
T 3a0f_A           22 FISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIIN------------NALAGNGANLLGTESIALDPHNPDR   89 (763)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBT------------TCSSSCCCCCCSEEEEECCTTCTTC
T ss_pred             ceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccc------------cccCCCcccccceeEEEECCCCCCE
Confidence            44588898865 679999988889998655  56654321000            000000 01123467788863 467


Q ss_pred             EEEEECC-------CCeEEEeCCCCeeEEceeccC--CC-ccc-CCcceeecC--CCCEEEEeCCCcccchhheeeeccc
Q 016318          145 LYIADAY-------FGLMKVGPEGGLATSLATEAE--GV-PLR-FTNDLDIDD--EGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       145 L~V~d~~-------~gl~~~d~~~g~~~~~~~~~~--~~-~~~-~~~~l~~d~--~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      +|++...       .+|++-+-.+...+.+.....  +. ... ....|++++  .+.+|+...                
T Consensus        90 ~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~----------------  153 (763)
T 3a0f_A           90 LYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR----------------  153 (763)
T ss_dssp             EEEEECSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS----------------
T ss_pred             EEEEecccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC----------------
Confidence            9997642       346655444444554432211  00 000 114588876  367888753                


Q ss_pred             CCCceEEEEeCCCCeEEEeccCCC-------CcceEEEccC-CCEEEEEeCCCCeEEEE
Q 016318          212 EDTGRVLKYDPTTKQTTVLLRNLQ-------FPNGLSLSKD-KSFFVFCEGSVGRLHKY  262 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~~~~~-------~~ngia~~~d-~~~l~v~et~~~~I~~~  262 (391)
                        .++|++-+-.....+.+. .+.       ....|+++|. .+.+|++....+.|++-
T Consensus       154 --~~~l~~S~DgG~TW~~~~-~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~S  209 (763)
T 3a0f_A          154 --TQGLWRSTDRAQTWSRMN-QLPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWVT  209 (763)
T ss_dssp             --SSCEEEESSTTSSCEECT-TSCCCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEEE
T ss_pred             --CCcEEEECCCCcCccccc-cCcccCCCccceEEEEECCCCCCEEEEEEeCCCeEEEE
Confidence              246666544333444433 111       1235677764 34488775433246654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=92.64  E-value=6.4  Score=40.36  Aligned_cols=101  Identities=7%  Similarity=0.058  Sum_probs=56.7

Q ss_pred             CCcceeec-CCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCC-eEEEeccCCC-CcceEEEccCCCEEEEEe
Q 016318          178 FTNDLDID-DEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK-QTTVLLRNLQ-FPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       178 ~~~~l~~d-~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~~~~~-~~ngia~~~d~~~l~v~e  253 (391)
                      ...+..++ +||+ |.++.+..             +.....|+.+|.+++ +.  +.+.+. ...+++++||++.|+++.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~-------------G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~  239 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMS-------------GNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVT  239 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESS-------------SSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCC-------------CCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEE
Confidence            34567889 9996 55544210             112235999999888 62  111111 134789999998777664


Q ss_pred             CC-C---CeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCE
Q 016318          254 GS-V---GRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEF  293 (391)
Q Consensus       254 t~-~---~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~l  293 (391)
                      .. .   .+|+++++.++......++.. ...+-.++..+++|+.
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~  284 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNT  284 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSE
T ss_pred             ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCE
Confidence            32 1   368888876542222223322 1122234678889983

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=91.82  E-value=6.8  Score=40.14  Aligned_cols=114  Identities=10%  Similarity=0.069  Sum_probs=65.8

Q ss_pred             ceEEEe-cCCCc-E-EEEECCC----CeEEEeCCCC-eeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhh
Q 016318          134 LGLRFD-KKTGD-L-YIADAYF----GLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNF  204 (391)
Q Consensus       134 ~gi~~d-~~~g~-L-~V~d~~~----gl~~~d~~~g-~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~  204 (391)
                      .+.+++ + +|+ | |+.+...    .|+.+|.+++ +.  +.....    ....+++..+|| .|+++....       
T Consensus       177 ~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~~~----~~~~~~~WspDg~~l~y~~~d~-------  242 (751)
T 2xe4_A          177 MEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADKVS----GTNGEIVWGPDHTSLFYVTKDE-------  242 (751)
T ss_dssp             EEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCCEE----EECSCCEECSSTTEEEEEEECT-------
T ss_pred             eeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCcccc----CceeeEEEecCCCEEEEEEECC-------
Confidence            356888 8 554 4 4444321    2999999988 52  111111    113467888888 566664210       


Q ss_pred             eeeecccCCCceEEEEeCCCCeE--EEe-c-cCCCCcceEEEccCCCEEEEEeC--CCCeEEEEEeccc
Q 016318          205 MQLVFSAEDTGRVLKYDPTTKQT--TVL-L-RNLQFPNGLSLSKDKSFFVFCEG--SVGRLHKYWLIGE  267 (391)
Q Consensus       205 ~~~~~~~~~~g~l~~~d~~~~~~--~~~-~-~~~~~~ngia~~~d~~~l~v~et--~~~~I~~~~~~g~  267 (391)
                            ......|++++..+++.  ..+ . ..-.+-.++.++|||++|+++..  ....|+.++++++
T Consensus       243 ------~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          243 ------TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             ------TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             ------CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence                  00113688888776642  122 1 11234457889999998887653  2457888887753

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=91.25  E-value=6.3  Score=36.97  Aligned_cols=154  Identities=11%  Similarity=0.014  Sum_probs=82.7

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      ....+++.++.++++++..++ ++.++.+..........   ..+++.      .... ..+ +..++| . +..|+|+ 
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~---~~~~~~------~~~~-lp~-V~~l~f-d-~~~L~v~-  103 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDS---TPLTFK------WEKE-IPD-VIFVCF-H-GDQVLVS-  103 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSS---CCCCCS------EEEE-CTT-EEEEEE-E-TTEEEEE-
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccc---ccccce------EEee-CCC-eeEEEE-C-CCEEEEE-
Confidence            455778888888777887775 55575541110000000   001100      0111 123 788899 3 6789998 


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                      ...+|..+|..+-....-..... .   ..+++..-+. ++.+.++                  +|.|+.+|.++++...
T Consensus       104 ~~~~l~v~dv~sl~~~~~~~~~~-~---~v~~i~~~~p-~~av~~~------------------dG~L~v~dl~~~~~~~  160 (388)
T 1xip_A          104 TRNALYSLDLEELSEFRTVTSFE-K---PVFQLKNVNN-TLVILNS------------------VNDLSALDLRTKSTKQ  160 (388)
T ss_dssp             ESSEEEEEESSSTTCEEEEEECS-S---CEEEEEECSS-EEEEEET------------------TSEEEEEETTTCCEEE
T ss_pred             cCCcEEEEEchhhhccCccceee-c---ceeeEEecCC-CEEEEEC------------------CCCEEEEEccCCcccc
Confidence            45668999876432111111111 1   1223322221 2333332                  5888999988777655


Q ss_pred             eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318          230 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       230 ~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~  267 (391)
                      +.   .....++++|+|  +.++ ..++.|..|+.++.
T Consensus       161 ~~---~~Vs~v~WSpkG--~~vg-~~dg~i~~~~~~~~  192 (388)
T 1xip_A          161 LA---QNVTSFDVTNSQ--LAVL-LKDRSFQSFAWRNG  192 (388)
T ss_dssp             EE---ESEEEEEECSSE--EEEE-ETTSCEEEEEEETT
T ss_pred             cc---CCceEEEEcCCc--eEEE-EcCCcEEEEcCCCc
Confidence            32   356689999999  3444 34567777876653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.65  E-value=8.6  Score=34.04  Aligned_cols=74  Identities=15%  Similarity=0.153  Sum_probs=44.8

Q ss_pred             CCcEEEEEC----------CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318          142 TGDLYIADA----------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       142 ~g~L~V~d~----------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      ++.|||...          ...++++|+.+++.+.+.....   ...-..+++. ++.||+......            .
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~~-~~~i~v~GG~~~------------~  212 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE---ARKNHGLVFV-KDKIFAVGGQNG------------L  212 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS---CCBSCEEEEE-TTEEEEECCEET------------T
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc---hhhcceEEEE-CCEEEEEeCCCC------------C
Confidence            578888643          2348999999998777642211   1122223333 678888752100            0


Q ss_pred             CCCceEEEEeCCCCeEEEec
Q 016318          212 EDTGRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~  231 (391)
                      .....+++||+.+++.+.+.
T Consensus       213 ~~~~~~~~yd~~~~~W~~~~  232 (306)
T 3ii7_A          213 GGLDNVEYYDIKLNEWKMVS  232 (306)
T ss_dssp             EEBCCEEEEETTTTEEEECC
T ss_pred             CCCceEEEeeCCCCcEEECC
Confidence            11346899999999887764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=90.63  E-value=6.9  Score=36.71  Aligned_cols=133  Identities=11%  Similarity=0.084  Sum_probs=79.7

Q ss_pred             ccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      +.++..+++  +|+.++++ .++.|..|+......-....     .++               .....+...+  .++.+
T Consensus        87 lp~V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~-----~~~---------------~~v~~i~~~~--p~~av  141 (388)
T 1xip_A           87 IPDVIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT-----SFE---------------KPVFQLKNVN--NTLVI  141 (388)
T ss_dssp             CTTEEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE-----ECS---------------SCEEEEEECS--SEEEE
T ss_pred             CCCeeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc-----eee---------------cceeeEEecC--CCEEE
Confidence            445788899  78888998 78899999865211110000     000               0112333332  24666


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ++..+.|+.+|.+++....+.        ..+..++..++| +.++..                  +|.+..|++++++.
T Consensus       142 ~~~dG~L~v~dl~~~~~~~~~--------~~Vs~v~WSpkG-~~vg~~------------------dg~i~~~~~~~~~~  194 (388)
T 1xip_A          142 LNSVNDLSALDLRTKSTKQLA--------QNVTSFDVTNSQ-LAVLLK------------------DRSFQSFAWRNGEM  194 (388)
T ss_dssp             EETTSEEEEEETTTCCEEEEE--------ESEEEEEECSSE-EEEEET------------------TSCEEEEEEETTEE
T ss_pred             EECCCCEEEEEccCCcccccc--------CCceEEEEcCCc-eEEEEc------------------CCcEEEEcCCCccc
Confidence            665555888888766554332        246678899999 444432                  47788888888874


Q ss_pred             ---EEe------cc---CCCCcceEEEccCCCEEEEE
Q 016318          228 ---TVL------LR---NLQFPNGLSLSKDKSFFVFC  252 (391)
Q Consensus       228 ---~~~------~~---~~~~~ngia~~~d~~~l~v~  252 (391)
                         ..+      .+   +-....+|++.+++.++.+-
T Consensus       195 ~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          195 EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence               233      11   22456688888888866553

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=90.32  E-value=0.31  Score=45.52  Aligned_cols=59  Identities=10%  Similarity=0.035  Sum_probs=32.7

Q ss_pred             CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          187 EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       187 ~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      ++.+|+++.                  +|.|+.+|.++|+..--... .......+..+++ +|++.+..+.|+.++.+
T Consensus         9 ~~~v~~gs~------------------dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~   67 (369)
T 2hz6_A            9 ETLLFVSTL------------------DGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSK   67 (369)
T ss_dssp             TTEEEEEET------------------TSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC---
T ss_pred             CCEEEEEcC------------------CCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECC
Confidence            567888874                  37899999988876432222 2222222334565 56665667788888864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=89.10  E-value=5.3  Score=40.20  Aligned_cols=115  Identities=14%  Similarity=0.173  Sum_probs=72.0

Q ss_pred             ccceEEEecCCCcEEEEECC------------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcc
Q 016318          132 RPLGLRFDKKTGDLYIADAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNY  199 (391)
Q Consensus       132 ~P~gi~~d~~~g~L~V~d~~------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~  199 (391)
                      .+...++.+.+++|||....            ..+.++|+.+++.+.+..... ....+..++++..+|.||+....   
T Consensus       187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~~~g~lyv~GG~---  262 (656)
T 1k3i_A          187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGN---  262 (656)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSS---
T ss_pred             CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCCCCCCEEEeCCC---
Confidence            35577776536788886321            127889999987766533211 11234456777789999998632   


Q ss_pred             cchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCc---ceEEEccCCCEEEEEeC-CC-----CeEEEEEec
Q 016318          200 QRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFP---NGLSLSKDKSFFVFCEG-SV-----GRLHKYWLI  265 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---ngia~~~d~~~l~v~et-~~-----~~I~~~~~~  265 (391)
                                   ....+.+||+.+++.+.+. .+..+   .+.++.+|++ +|+.-- ..     ..+++|+..
T Consensus       263 -------------~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          263 -------------DAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             -------------STTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETT
T ss_pred             -------------CCCceEEecCcCCceeECC-CCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCC
Confidence                         1236999999998887764 23222   3456666888 666633 11     468888764

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=88.40  E-value=8.3  Score=39.67  Aligned_cols=160  Identities=13%  Similarity=0.038  Sum_probs=83.0

Q ss_pred             eEEEcc-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEec-CCCcEEEE
Q 016318           73 SMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK-KTGDLYIA  148 (391)
Q Consensus        73 ~i~~d~-~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~-~~g~L~V~  148 (391)
                      .|++|+ +.+.+|++ .++.|++-...  .|+.+....+.    +.               ..+.-|.+++ ++++||++
T Consensus       592 ~i~~d~~~~~~~y~g-~~g~v~~S~DgG~tW~~~~~~lp~----~~---------------~~~~~i~~~~~~~~~l~~~  651 (763)
T 3a0f_A          592 GIAADRVQANTFYVY-VEGDFFVSTDGGKSYTKKGNGLPC----CW---------------TYTGTPVTSNLRAGELWVS  651 (763)
T ss_dssp             CEEECSSSTTCEEEE-ETTEEEEESSTTSBCEEECBTSCC----SS---------------CCCEEEEECSSSTTCEEEE
T ss_pred             eEEEeccCCCEEEEE-cCCCEEEEeCCCcCccccccCCCc----cc---------------CccccEEECCCCCCcEEEE
Confidence            677776 34558888 46778776433  56554211000    00               0011156654 36789999


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCc-ccCCcceeec-C-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVP-LRFTNDLDID-D-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~-~~~~~~l~~d-~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      ....+|++-+-.+...+.+....+... ...-.++++. . ...||+....             +....++|++-+-...
T Consensus       652 ~~~~~l~~S~D~G~tW~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~G~~-------------~~~~~~gl~~S~D~G~  718 (763)
T 3a0f_A          652 VKGVGIYHSTDFGNTFTALAGSGSSLNPAVFSIGAPQTPNATETLFLWGIP-------------SASQPEGLYMSTDNGG  718 (763)
T ss_dssp             ETTTEEEEESSTTSBCEECTTBTTTBEEEEEEEECCSSTTSSCEEEEEEEC-------------STTSCSEEEEESSTTS
T ss_pred             cCCCeEEEEcCCCCCceEccCCCcccccceeEEeeecCCCCCceEEEEEEc-------------ccCCCcEEEEeCCCCC
Confidence            866678887655555555431111100 0001122222 2 3468876400             0012467888776655


Q ss_pred             eEEEecc---CCCCcceEEEccCC-CEEEEEeCCCCeEEEEEecc
Q 016318          226 QTTVLLR---NLQFPNGLSLSKDK-SFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       226 ~~~~~~~---~~~~~ngia~~~d~-~~l~v~et~~~~I~~~~~~g  266 (391)
                      ....+..   .+..+..|+.+|.. ..||++ |.++.|+.-++.|
T Consensus       719 tW~~~~~~~~~~~~~~~i~~~p~~~~~v~~~-T~GrGi~~g~~~~  762 (763)
T 3a0f_A          719 LWTRLNDDAHNYGGATVISGDPRIYGRVYIG-MNGRGIICAQALG  762 (763)
T ss_dssp             CCEECSCTTCCTBCEEEEEECTTSTTEEEEE-EBSSCEEEEESCC
T ss_pred             CcEeccCccccCCCcceEEeCCCCCCEEEEe-CCCCeEEEEecCC
Confidence            6666652   22223357888754 348887 6677788877654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=85.17  E-value=20  Score=31.75  Aligned_cols=107  Identities=16%  Similarity=0.197  Sum_probs=59.3

Q ss_pred             CCcEEEEECC----------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318          142 TGDLYIADAY----------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       142 ~g~L~V~d~~----------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      ++.|||....          +.++++|+.+++.+.+......   +.-..+++ -+|.||+.....            ..
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~-~~~~iyv~GG~~------------~~  133 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP---RNRIGVGV-IDGHIYAVGGSH------------GC  133 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC---CBTCEEEE-ETTEEEEECCEE------------TT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC---ccccEEEE-ECCEEEEEcCCC------------CC
Confidence            5788886322          3589999999887776432111   11122222 377899875210            00


Q ss_pred             CCCceEEEEeCCCCeEEEeccCCC--CcceEEEccCCCEEEEEeCC-----CCeEEEEEecc
Q 016318          212 EDTGRVLKYDPTTKQTTVLLRNLQ--FPNGLSLSKDKSFFVFCEGS-----VGRLHKYWLIG  266 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~~~~~--~~ngia~~~d~~~l~v~et~-----~~~I~~~~~~g  266 (391)
                      .....+++||+.+++.+.+..-..  .....+.. +++ ||+.--.     .+.+++|++..
T Consensus       134 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~  193 (308)
T 1zgk_A          134 IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRL-LYAVGGFDGTNRLNSAECYYPER  193 (308)
T ss_dssp             EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTE-EEEECCBCSSCBCCCEEEEETTT
T ss_pred             cccccEEEECCCCCeEeECCCCCccccceEEEEE-CCE-EEEEeCCCCCCcCceEEEEeCCC
Confidence            113468999999998877643211  11223332 444 7776321     25688888543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=85.05  E-value=20  Score=31.81  Aligned_cols=74  Identities=19%  Similarity=0.211  Sum_probs=44.3

Q ss_pred             CCcEEEEEC-------CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318          142 TGDLYIADA-------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       142 ~g~L~V~d~-------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ++.|||...       ...++++|+.+++.+.+.....   ...-..+++ -++.||+......            ....
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~-~~~~iyv~GG~~~------------~~~~  221 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT---PRSMFGVAI-HKGKIVIAGGVTE------------DGLS  221 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSS---CCBSCEEEE-ETTEEEEEEEEET------------TEEE
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCC---CcccceEEE-ECCEEEEEcCcCC------------CCcc
Confidence            678888642       1349999999998777642211   111122232 3678888752100            0012


Q ss_pred             ceEEEEeCCCCeEEEec
Q 016318          215 GRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~  231 (391)
                      ..+.+||+++++.+.+.
T Consensus       222 ~~~~~yd~~~~~W~~~~  238 (318)
T 2woz_A          222 ASVEAFDLKTNKWEVMT  238 (318)
T ss_dssp             EEEEEEETTTCCEEECC
T ss_pred             ceEEEEECCCCeEEECC
Confidence            46889999999887764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=84.10  E-value=21  Score=31.25  Aligned_cols=105  Identities=17%  Similarity=0.248  Sum_probs=59.1

Q ss_pred             CCcEEEEECC------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318          142 TGDLYIADAY------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG  215 (391)
Q Consensus       142 ~g~L~V~d~~------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g  215 (391)
                      ++.|||....      ..++++|+.+++.+.+......   ..-..+++ -++.||+......            .....
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~-~~~~iyv~GG~~~------------~~~~~  175 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA---REGAGLVV-ASGVIYCLGGYDG------------LNILN  175 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC---CBSCEEEE-ETTEEEEECCBCS------------SCBCC
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC---cccceEEE-ECCEEEEECCCCC------------Ccccc
Confidence            5788887432      2389999999888776432211   11122222 3678998752110            01235


Q ss_pred             eEEEEeCCCCeEEEeccCCCCcc---eEEEccCCCEEEEEeCC-----CCeEEEEEec
Q 016318          216 RVLKYDPTTKQTTVLLRNLQFPN---GLSLSKDKSFFVFCEGS-----VGRLHKYWLI  265 (391)
Q Consensus       216 ~l~~~d~~~~~~~~~~~~~~~~n---gia~~~d~~~l~v~et~-----~~~I~~~~~~  265 (391)
                      .+++||+.+++.+.+.. +..+.   .++. -+++ ||+.-..     .+.+++|+++
T Consensus       176 ~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~~-i~v~GG~~~~~~~~~v~~yd~~  230 (301)
T 2vpj_A          176 SVEKYDPHTGHWTNVTP-MATKRSGAGVAL-LNDH-IYVVGGFDGTAHLSSVEAYNIR  230 (301)
T ss_dssp             CEEEEETTTTEEEEECC-CSSCCBSCEEEE-ETTE-EEEECCBCSSSBCCCEEEEETT
T ss_pred             eEEEEeCCCCcEEeCCC-CCcccccceEEE-ECCE-EEEEeCCCCCcccceEEEEeCC
Confidence            79999999998887642 22221   2222 2444 6666322     2467777754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=83.65  E-value=22  Score=31.12  Aligned_cols=107  Identities=15%  Similarity=0.117  Sum_probs=59.2

Q ss_pred             CCcEEEEECC------CCeEEEeCCCCe---eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccC
Q 016318          142 TGDLYIADAY------FGLMKVGPEGGL---ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       142 ~g~L~V~d~~------~gl~~~d~~~g~---~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      ++.|||....      ..++++|+.+++   .+.+.....   .+.-..++. -++.||+.....            ...
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~---~r~~~~~~~-~~~~lyv~GG~~------------~~~  125 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV---RRGLAGATT-LGDMIYVSGGFD------------GSR  125 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS---CCBSCEEEE-ETTEEEEECCBC------------SSC
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC---CccceeEEE-ECCEEEEEcccC------------CCc
Confidence            5788886332      349999999887   666532211   111122222 367899885221            011


Q ss_pred             CCceEEEEeCCCCeEEEeccCC--CCcceEEEccCCCEEEEEeC-----CCCeEEEEEecc
Q 016318          213 DTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEG-----SVGRLHKYWLIG  266 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~~--~~~ngia~~~d~~~l~v~et-----~~~~I~~~~~~g  266 (391)
                      ....+++||+.+++.+.+..-.  ......+. -+++ ||+.--     ..+.+++|++..
T Consensus       126 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~d~~~  184 (301)
T 2vpj_A          126 RHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGV-IYCLGGYDGLNILNSVEKYDPHT  184 (301)
T ss_dssp             BCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTE-EEEECCBCSSCBCCCEEEEETTT
T ss_pred             ccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCE-EEEECCCCCCcccceEEEEeCCC
Confidence            2357999999999887764221  11122332 2555 777632     135688888553

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=82.20  E-value=39  Score=34.15  Aligned_cols=81  Identities=6%  Similarity=0.027  Sum_probs=46.3

Q ss_pred             eEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCC-cccCCcceeecCC-CCEEEEeCCCcccchhheeeec
Q 016318          135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGV-PLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVF  209 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~-~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~  209 (391)
                      +.+.-. ++.|||.....   .++++|+.+++.+.+....... +......++++.+ |.||+......-          
T Consensus       494 ~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~----------  562 (695)
T 2zwa_A          494 SACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMD----------  562 (695)
T ss_dssp             EEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTT----------
T ss_pred             eEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCC----------
Confidence            444423 67898874332   4999999999888765311111 1112222454554 789998622100          


Q ss_pred             ccCCCceEEEEeCCCCe
Q 016318          210 SAEDTGRVLKYDPTTKQ  226 (391)
Q Consensus       210 ~~~~~g~l~~~d~~~~~  226 (391)
                      .......+++||+.+.+
T Consensus       563 ~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          563 QTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             SSCBCCEEEEEEECTTC
T ss_pred             CCeeeCcEEEEEccCCc
Confidence            00123579999999887

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=81.24  E-value=45  Score=34.31  Aligned_cols=121  Identities=12%  Similarity=0.046  Sum_probs=71.3

Q ss_pred             cCccceEEEecC-CCcEEEEECCCCeEEEeCCCCeeEEceeccCCC--cccCCcceeecCC--CCEEEEeCCCcccchhh
Q 016318          130 CGRPLGLRFDKK-TGDLYIADAYFGLMKVGPEGGLATSLATEAEGV--PLRFTNDLDIDDE--GNVYFTDSSTNYQRRNF  204 (391)
Q Consensus       130 ~g~P~gi~~d~~-~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~--~~~~~~~l~~d~~--G~ly~td~~~~~~~~~~  204 (391)
                      .++..+|++++. .+.+|++....+|++-+-.+...+.+.......  ......+|++++.  +.+|++.....  +   
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~--~---   88 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYV--G---   88 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCT--T---
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccC--C---
Confidence            468889999874 367999987788999887766666654321100  1234678888874  57888752100  0   


Q ss_pred             eeeecccCCCceEEEEeCCCCeEEEeccCCC---------CcceEEEccC-CCEEEEEeCCCCeEEEEE
Q 016318          205 MQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ---------FPNGLSLSKD-KSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       205 ~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~---------~~ngia~~~d-~~~l~v~et~~~~I~~~~  263 (391)
                             ...+.|++-+-.....+.+...+.         ....++++|. .+.+|+. +....|+|-.
T Consensus        89 -------~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g-~~~~gl~~S~  149 (789)
T 1sqj_A           89 -------DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRTEGIWKSS  149 (789)
T ss_dssp             -------SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEE-CSSSCEEEES
T ss_pred             -------CcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEE-eccCCEEEEC
Confidence                   001567766544445555432211         1236888874 3457765 4446677653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	391
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	6e-31
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	2e-17
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	7e-07
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	2e-04

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  118 bits (297), Expect = 6e-31
 Identities = 52/336 (15%), Positives = 92/336 (27%), Gaps = 47/336 (13%)

Query: 66  NQIQGPESMAFDPLGRGPY-TGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYL 124
               G E +   P G     +G+    I+ +D  K         N       +P  +   
Sbjct: 32  GIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLN-----EKEPAVSEL- 85

Query: 125 KNEHICGRPLGLRFDKKTGDLYIADA---YFGLMKVG-----------PEGGLATSLATE 170
             E I        F+      +I D    Y  ++               E   +      
Sbjct: 86  --EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT 143

Query: 171 AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL 230
                L   ND+      + Y T+    Y    +++                +     V+
Sbjct: 144 IRHKLLPSVNDIVAVGPEHFYATNDH--YFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV 201

Query: 231 LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK 290
                F NG+++S D  +    E    ++H Y                    DN+  +  
Sbjct: 202 AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPV 261

Query: 291 G-EFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGK 349
             + WV  H          A  P     L                 R+  +    S E K
Sbjct: 262 TGDLWVGCHPNGMRIFFYDAENPPGSEVL-----------------RIQDI---LSEEPK 301

Query: 350 ILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFV 385
           +  V  ++ G V++  +      GKL +G+V    +
Sbjct: 302 VTVVYAEN-GTVLQGSTVAAVYKGKLLIGTVFHKAL 336

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 80.1 bits (196), Expect = 2e-17
 Identities = 62/316 (19%), Positives = 102/316 (32%), Gaps = 43/316 (13%)

Query: 63  KFLNQIQGPESMAFDPLGR-------GPYTGVADGRILFWD--GLKWTDFAFTSNNRSEL 113
           K    I G E   FD  G            G   G IL  D    K T       N    
Sbjct: 12  KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN---- 67

Query: 114 CNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEG 173
                            G P G + D+    L++AD   GL+ V  +G        ++EG
Sbjct: 68  --------------GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEG 113

Query: 174 VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN 233
             ++  ND   D EGN++ T  +      ++ +     E  G +  +    +   V    
Sbjct: 114 RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR--SMQEKFGSIYCFTTDGQMIQV-DTA 170

Query: 234 LQFPNGLSLSKD----KSFFVFCEGSVGRLHKYWLIG-EKAGNLEAFAILP----GYPDN 284
            QFPNG+++           +  E    +L  Y + G  K  N + +  +P    G  D 
Sbjct: 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230

Query: 285 VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKY 344
           +  +E     VA        SH+    P      +++    +    +H   +   + V  
Sbjct: 231 MDFDEDNNLLVANWGS----SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE 286

Query: 345 SPEGKILQVLEDSKGK 360
                + +      GK
Sbjct: 287 HENNAVWKFEWQRNGK 302

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 48.1 bits (113), Expect = 7e-07
 Identities = 29/227 (12%), Positives = 52/227 (22%), Gaps = 33/227 (14%)

Query: 71  PESMAFDPLGRGPYTGVADGRILFWD-GLKWTDFAFTSNNRSELCNPKPIATSYLKNEHI 129
            E++A  P G    T    G I+           A                         
Sbjct: 30  LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVE---------------------- 67

Query: 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN 189
            G+  GL F     DL         + V        ++ T        F N +    +  
Sbjct: 68  -GKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ 125

Query: 190 VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFF 249
               DS            +   + +G +    P     +         NGL    +  + 
Sbjct: 126 YLTADSYRGAIWL-----IDVVQPSGSIWLEHPMLA-RSNSESVFPAANGLKRFGNFLYV 179

Query: 250 VFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVA 296
                    L +  +            +     D+   + +G  + A
Sbjct: 180 --SNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA 224

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 47/268 (17%), Positives = 87/268 (32%), Gaps = 49/268 (18%)

Query: 45  SLIPTVKDDKNLLQNSE--IKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWD-GLKWT 101
           S +P + + +     +E  ++   +    E + FD  G+     V +G I   +   K  
Sbjct: 14  SAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI 73

Query: 102 DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD-----AYFGLMK 156
              F S                         P  ++  K  G L++       +  G+  
Sbjct: 74  KRPFVS---------------------HKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFA 111

Query: 157 VGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGR 216
               G     +    +       +D+  D +G  YFTD                    G 
Sbjct: 112 ATENGDNLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTN-----------PLGG 158

Query: 217 VLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA 276
           V    P  +  T +++N+   NG++LS D+      E +  RLH+  L  +        A
Sbjct: 159 VYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA 218

Query: 277 ILPG------YPDNVRTNEKGEFWVAIH 298
            +P        PD+   +     +VA++
Sbjct: 219 TIPYYFTGHEGPDSCCIDSDDNLYVAMY 246

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	391
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.96
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.95
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.93
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.87
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.87
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.83
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.78
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.62
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.6
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.56
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.56
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.51
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.51
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.44
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.37
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.31
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.28
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.27
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.08
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.03
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.86
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.81
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.77
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.71
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.68
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.65
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.64
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.6
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.56
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.52
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.51
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.5
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.49
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.47
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.45
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.45
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.44
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.4
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.32
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.31
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.3
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.27
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.24
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.24
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.17
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.15
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.08
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.06
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.06
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.05
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.04
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.04
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.91
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.89
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.81
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.66
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.65
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.48
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.1
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.87
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.74
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.74
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.69
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	96.09
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.07
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.01
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.93
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.67
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.56
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.54
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	95.43
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.36
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.2
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.05
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	94.86
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.08
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	93.76
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.49
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	91.1
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	91.03
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	90.59
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	90.54
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	89.6
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	89.55
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.05
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	85.54
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	85.29
d2ebsa2	356	Oligoxyloglucan reducing end-specific cellobiohydr	82.55
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	82.36

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.96  E-value=7e-28  Score=224.00  Aligned_cols=261  Identities=22%  Similarity=0.310  Sum_probs=186.9

Q ss_pred             cccCcceEEEccCCCeeEEEec--------CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceE
Q 016318           67 QIQGPESMAFDPLGRGPYTGVA--------DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL  136 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly~~~~--------~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi  136 (391)
                      .+.+||++++|++|+ +|+...        +|+|++++++  ....+...                  ......++|.||
T Consensus        16 ~~~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~------------------~~~~~~g~P~Gl   76 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP------------------EVNGYGGIPAGC   76 (314)
T ss_dssp             CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECC------------------EETTEECCEEEE
T ss_pred             CCCCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECC------------------ccccCCCcceeE
Confidence            488999999999999 555432        4689999987  33333211                  111235789999


Q ss_pred             EEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCce
Q 016318          137 RFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       137 ~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      +++++++.|||++..+++.+++++++..+.+....++.++..||++++|++|++|||+++.........  .....+.|+
T Consensus        77 ~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~--~~~~~~~G~  154 (314)
T d1pjxa_          77 QCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT--RSMQEKFGS  154 (314)
T ss_dssp             EECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC--BTTSSSCEE
T ss_pred             EEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccccc--ceeccCCce
Confidence            999844569999988899999999887666656667777889999999999999999976443322221  222356789


Q ss_pred             EEEEeCCCCeEEEeccCCCCcceEEEccCCC----EEEEEeCCCCeEEEEEeccc-cCccceeecccC----CCCCceEe
Q 016318          217 VLKYDPTTKQTTVLLRNLQFPNGLSLSKDKS----FFVFCEGSVGRLHKYWLIGE-KAGNLEAFAILP----GYPDNVRT  287 (391)
Q Consensus       217 l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~----~l~v~et~~~~I~~~~~~g~-~~g~~~~~~~~~----g~p~~i~~  287 (391)
                      +++++++ ++...+...+..||||+++++++    .||++++.+++|++|++.++ .....+++..++    +.||+|++
T Consensus       155 v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiav  233 (314)
T d1pjxa_         155 IYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             EEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred             EEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEE
Confidence            9999986 45666677889999999999875    79999999999999998754 223344555433    46999999


Q ss_pred             CCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCC-EEEEEeCCCCCeeecee
Q 016318          288 NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGK-ILQVLEDSKGKVVKAIS  366 (391)
Q Consensus       288 d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~-~~~~~~~~~g~~~~~is  366 (391)
                      |++|++||+....                                      +.|.+||++|. ....+..+..    ..+
T Consensus       234 D~~GnlyVa~~~~--------------------------------------g~I~~~dp~~g~~~~~i~~p~~----~~t  271 (314)
T d1pjxa_         234 DEDNNLLVANWGS--------------------------------------SHIEVFGPDGGQPKMRIRCPFE----KPS  271 (314)
T ss_dssp             BTTCCEEEEEETT--------------------------------------TEEEEECTTCBSCSEEEECSSS----CEE
T ss_pred             ecCCcEEEEEcCC--------------------------------------CEEEEEeCCCCEEEEEEECCCC----CEE
Confidence            9999999998764                                      34666777643 3334443321    234


Q ss_pred             EEEEEC--CEEEEecCCCCeEEEEeCC
Q 016318          367 EVEEKD--GKLWMGSVLMPFVAVYDLS  391 (391)
Q Consensus       367 ~~~~~~--g~Lylgs~~~~~i~~~~~~  391 (391)
                      .+....  .+||+.+..+..|.+++++
T Consensus       272 ~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         272 NLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            444432  3688888777888877753

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.95  E-value=5e-26  Score=212.91  Aligned_cols=280  Identities=19%  Similarity=0.203  Sum_probs=194.7

Q ss_pred             cccccCcceEEEccCCCeeEEEec-------------CCEEEEEeCC----ceeEEEeecCCCcccCCCCCCcccccccc
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVA-------------DGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNE  127 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~-------------~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (391)
                      ++..+|||+|+++++|. +|+++.             .|.|+.++.+    ....+.....                ...
T Consensus        31 ~g~~~G~EDi~~~~dg~-~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~----------------~~~   93 (340)
T d1v04a_          31 KGIDNGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN----------------TLD   93 (340)
T ss_dssp             TTCCSCCCEEEECTTSE-EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECS----------------SSC
T ss_pred             CCCCCCcceEEECCCCc-EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCC----------------CCC
Confidence            46567999999999987 555543             2777777654    1222221110                011


Q ss_pred             CccCccceEEEecC-CC--cEEEEECC-C----CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcc
Q 016318          128 HICGRPLGLRFDKK-TG--DLYIADAY-F----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNY  199 (391)
Q Consensus       128 ~~~g~P~gi~~d~~-~g--~L~V~d~~-~----gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~  199 (391)
                      ....+|+||.+-.+ +|  .|+|.+.. .    .++.++.++.+.+.. .......+..||++++..+|.+|+|+.....
T Consensus        94 ~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~-~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~  172 (340)
T d1v04a_          94 ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHL-KTIRHKLLPSVNDIVAVGPEHFYATNDHYFI  172 (340)
T ss_dssp             GGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEE-EEECCTTCSSEEEEEEEETTEEEEEESCSCC
T ss_pred             CcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEE-eecCCccccCccceEEecCCCEEEecCccCc
Confidence            12357999987431 34  48888763 2    277777776655544 3344556788999999999999999744322


Q ss_pred             cchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC
Q 016318          200 QRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP  279 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~  279 (391)
                      .......+.+.+.+.+.++.||+  ++.+++.+++.+||||+++||+++|||+++..++|++|++++++..+...+.+++
T Consensus       173 ~~~~~~~e~~~~~~~g~v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~  250 (340)
T d1v04a_         173 DPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD  250 (340)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS
T ss_pred             ChhhhhhhHhhcCCceeEEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCC
Confidence            22223344556778899999986  4677788899999999999999999999999999999999887655555566799


Q ss_pred             CCCCceEeCC-CCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEE----CCCCCEEEEE
Q 016318          280 GYPDNVRTNE-KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKY----SPEGKILQVL  354 (391)
Q Consensus       280 g~p~~i~~d~-~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~----d~~g~~~~~~  354 (391)
                      +.||||.+|+ +|.+|++.......+.   ...+.       .+.+              ..+.++    ..++++...|
T Consensus       251 ~~pDNi~~d~~~g~lwva~~p~~~~~~---~~~~~-------~~~~--------------s~v~ri~~~~~~~~~v~~~~  306 (340)
T d1v04a_         251 TLVDNISVDPVTGDLWVGCHPNGMRIF---FYDAE-------NPPG--------------SEVLRIQDILSEEPKVTVVY  306 (340)
T ss_dssp             SEEEEEEECTTTCCEEEEEESCHHHHH---SCCTT-------SCCC--------------EEEEEEECTTSSSCEEEEEE
T ss_pred             CCCCccEEecCCCEEEEEECCcccchh---hhccc-------CCCC--------------ceeEEEEeccCCCCeEEEEE
Confidence            9999999985 7889999876432211   11110       0110              122222    2457777777


Q ss_pred             eCCCCCeeeceeEEEEECCEEEEecCCCCeEEEEeC
Q 016318          355 EDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  390 (391)
Q Consensus       355 ~~~~g~~~~~is~~~~~~g~Lylgs~~~~~i~~~~~  390 (391)
                      ++ +|..+...|.+.+++|+||+||+..++| .|+|
T Consensus       307 ~~-~G~~~~~~T~a~~~~g~L~iGs~~~~~l-~C~~  340 (340)
T d1v04a_         307 AE-NGTVLQGSTVAAVYKGKLLIGTVFHKAL-YCDL  340 (340)
T ss_dssp             EE-CSSSSCSEEEEEEETTEEEEEESSSCEE-EEEC
T ss_pred             eC-CCcEeeceEEEEEECCEEEEEeeeCCce-EecC
Confidence            76 6777888899999999999999999998 7876

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.93  E-value=6e-24  Score=197.62  Aligned_cols=216  Identities=20%  Similarity=0.255  Sum_probs=161.4

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ...|++++|++|+++|++..+++|+|++++ + ...+..                      ...+.|.||++++ +|+||
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~----------------------~~~~~p~gla~~~-dG~l~   96 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV----------------------SHKANPAAIKIHK-DGRLF   96 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE----------------------CSSSSEEEEEECT-TSCEE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe----------------------CCCCCeeEEEECC-CCCEE
Confidence            355999999999988888899999999987 2 222211                      1246799999998 79999


Q ss_pred             EEECC-----CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          147 IADAY-----FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       147 V~d~~-----~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      |++..     .+++.++..++.+..+...  ......+|+++++++|++|+++....           ...+.+.+++++
T Consensus        97 va~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~  163 (319)
T d2dg1a1          97 VCYLGDFKSTGGIFAATENGDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVS  163 (319)
T ss_dssp             EEECTTSSSCCEEEEECTTSCSCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEEC
T ss_pred             EEecCCCccceeEEEEcCCCceeeeeccC--CCcccCCcceeEEeccceeecccccc-----------cccCcceeEEEe
Confidence            99753     2489999988876655432  22356799999999999999985421           123467899999


Q ss_pred             CCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcc----ceeecc--cCCCCCceEeCCCCCEEE
Q 016318          222 PTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN----LEAFAI--LPGYPDNVRTNEKGEFWV  295 (391)
Q Consensus       222 ~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~----~~~~~~--~~g~p~~i~~d~~G~lwv  295 (391)
                      ++++.++.+..++..||||++++|++.||++++..++|++|+++.+....    ......  ..+.||+|++|++|++||
T Consensus       164 ~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~V  243 (319)
T d2dg1a1         164 PDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV  243 (319)
T ss_dssp             TTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE
T ss_pred             cccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEE
Confidence            99888888888899999999999999999999999999999987542111    111111  224599999999999999


Q ss_pred             EEcCCCchhhhhhhcCccceeeeeecCccc
Q 016318          296 AIHCRRSLYSHLMALYPKIRHFLLKLPISA  325 (391)
Q Consensus       296 a~~~~~~~~~~~l~~~~~~~~~~~~l~~~~  325 (391)
                      +......+.     .+...++++.+++.|.
T Consensus       244 a~~~~g~V~-----~~~p~G~~l~~i~~P~  268 (319)
T d2dg1a1         244 AMYGQGRVL-----VFNKRGYPIGQILIPG  268 (319)
T ss_dssp             EEETTTEEE-----EECTTSCEEEEEECTT
T ss_pred             EEcCCCEEE-----EECCCCcEEEEEeCCC
Confidence            998765432     2444666666665554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.92  E-value=7.7e-23  Score=187.93  Aligned_cols=191  Identities=19%  Similarity=0.213  Sum_probs=149.0

Q ss_pred             ceEEEcc-CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           72 ESMAFDP-LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        72 e~i~~d~-~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      |+...|+ +|+++|++..+++|++++++ +.......                       ...|.++++++ +|+|||+.
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~-----------------------~~~~~~i~~~~-dg~l~va~   76 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-----------------------PFMGSALAKIS-DSKQLIAS   76 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-----------------------SSCEEEEEEEE-TTEEEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC-----------------------CCCcEEEEEec-CCCEEEEE
Confidence            6667775 67788999999999999987 32222111                       24567888887 79999996


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                       ..||+++|+++++++.+.....+.+...+|++.+|++|++|+++....           +..+.+.+++++  +++.+.
T Consensus        77 -~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~-----------~~~~~g~l~~~~--~g~~~~  142 (295)
T d2ghsa1          77 -DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA--KGKVTK  142 (295)
T ss_dssp             -TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE--TTEEEE
T ss_pred             -eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccc-----------ccccceeEeeec--CCcEEE
Confidence             468999999999998887665666677899999999999999984311           123356677775  467888


Q ss_pred             eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc---cCccceeecc---cCCCCCceEeCCCCCEEEEEcCC
Q 016318          230 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE---KAGNLEAFAI---LPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       230 ~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~---~~g~~~~~~~---~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      +..++..|||+++++|++.+|++++..++|++|+++..   ..++...+.+   .++.||++++|++|++|+|....
T Consensus       143 ~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~  219 (295)
T d2ghsa1         143 LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE  219 (295)
T ss_dssp             EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred             EeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC
Confidence            88888999999999999999999999999999998753   2233445543   45679999999999999998775

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.87  E-value=9.9e-20  Score=167.31  Aligned_cols=185  Identities=21%  Similarity=0.160  Sum_probs=137.4

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ..||++++++||++++++..+++|++++++ ....+...                       .++|.|+++++ +|+|||
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~-----------------------~~~~~gla~~~-dG~l~v   83 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATV-----------------------EGKVSGLAFTS-NGDLVA   83 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEEC-----------------------SSEEEEEEECT-TSCEEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcC-----------------------CCCcceEEEcC-CCCeEE
Confidence            479999999999976677779999999988 44444321                       46799999999 799999


Q ss_pred             EECCCC-eEEEeCC--CCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          148 ADAYFG-LMKVGPE--GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       148 ~d~~~g-l~~~d~~--~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      ++...+ +.+++..  .+..+.+.....   ...+++++++++|++|++++.                 .++++++++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~n~i~~~~~g~~~v~~~~-----------------~~~i~~~~~~~  143 (302)
T d2p4oa1          84 TGWNADSIPVVSLVKSDGTVETLLTLPD---AIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQ  143 (302)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEECTT---CSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTT
T ss_pred             EecCCceEEEEEecccccceeeccccCC---ccccceeEEccCCCEEeeccc-----------------cccceeeeccC
Confidence            987654 6666543  344444443322   357899999999999999965                 57899999988


Q ss_pred             CeEEEecc-----------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC-ccceeecccCCCCCceEeCCCCC
Q 016318          225 KQTTVLLR-----------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA-GNLEAFAILPGYPDNVRTNEKGE  292 (391)
Q Consensus       225 ~~~~~~~~-----------~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~-g~~~~~~~~~g~p~~i~~d~~G~  292 (391)
                      +.......           ....+||++.+  ++.+|++++.+++|++++.++... ...+.+.. .+.|++|++|++|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~pdgia~d~dG~  220 (302)
T d2p4oa1         144 PSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN  220 (302)
T ss_dssp             TEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC
T ss_pred             CcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccC-CCCCcceEECCCCC
Confidence            87665431           23357787764  567999999999999999876422 22233332 34699999999999


Q ss_pred             EEEEEcCC
Q 016318          293 FWVAIHCR  300 (391)
Q Consensus       293 lwva~~~~  300 (391)
                      +|++....
T Consensus       221 l~va~~~~  228 (302)
T d2p4oa1         221 LYGATHIY  228 (302)
T ss_dssp             EEEECBTT
T ss_pred             EEEEEcCC
Confidence            99998664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=1.7e-20  Score=168.72  Aligned_cols=234  Identities=21%  Similarity=0.244  Sum_probs=164.3

Q ss_pred             cCcceEEEccCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      .+|++|++|++|++++++.. +++|++++.........                    .......|.|+++++ +|+|||
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~--------------------~~~~~~~p~gvav~~-~g~i~v   72 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL--------------------PFNGLYQPQGLAVDG-AGTVYV   72 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC--------------------CCCSCCSCCCEEECT-TCCEEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe--------------------ccCCccCceEEEEcC-CCCEEE
Confidence            58999999999995555543 47888887662211110                    011246799999998 799999


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT  227 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  227 (391)
                      ++..+++.++...+.......    ...+..|++|+++++|++|+++..                 +.++++++..+...
T Consensus        73 ~d~~~~~i~~~~~~~~~~~~~----~~~~~~p~~iavd~~g~i~v~d~~-----------------~~~~~~~~~~~~~~  131 (260)
T d1rwia_          73 TDFNNRVVTLAAGSNNQTVLP----FDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQ  131 (260)
T ss_dssp             EETTTEEEEECTTCSCCEECC----CCSCCSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCSSC
T ss_pred             eeeeeceeeeeeeccceeeee----eeeeeecccccccccceeEeeccc-----------------ccccccccccccee
Confidence            999888877776554333321    122467999999999999999854                 46788998877665


Q ss_pred             EEe-ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCceEeCCCCCEEEEEcCCCchhh
Q 016318          228 TVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHCRRSLYS  305 (391)
Q Consensus       228 ~~~-~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~~d~~G~lwva~~~~~~~~~  305 (391)
                      ... ..++..|++|+++++++ +|+++..+.+|.+++.++.   ....+. ...+.|.+|++|++|++|++....     
T Consensus       132 ~~~~~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~---~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~-----  202 (260)
T d1rwia_         132 TVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESN---NQVVLPFTDITAPWGIAVDEAGTVYVTEHNT-----  202 (260)
T ss_dssp             EECCCCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTC---CEEECCCSSCCSEEEEEECTTCCEEEEETTT-----
T ss_pred             eeeeecccCCcceeeecCCCC-Eeeeccccccccccccccc---eeeeeeccccCCCccceeeeeeeeeeeecCC-----
Confidence            554 35678999999999998 8999999999999986653   122222 223579999999999999998764     


Q ss_pred             hhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEE-CCEEEEecCCCCe
Q 016318          306 HLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEK-DGKLWMGSVLMPF  384 (391)
Q Consensus       306 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~-~g~Lylgs~~~~~  384 (391)
                                                       ..+.++++++.....+. ..+  +...+.+..+ +|+||+....+++
T Consensus       203 ---------------------------------~~i~~~~~~~~~~~~~~-~~~--~~~P~~i~~d~~g~l~vad~~~~r  246 (260)
T d1rwia_         203 ---------------------------------NQVVKLLAGSTTSTVLP-FTG--LNTPLAVAVDSDRTVYVADRGNDR  246 (260)
T ss_dssp             ---------------------------------TEEEEECTTCSCCEECC-CCS--CCCEEEEEECTTCCEEEEEGGGTE
T ss_pred             ---------------------------------CEEEEEeCCCCeEEEEc-cCC--CCCeEEEEEeCCCCEEEEECCCCE
Confidence                                             23666777776544432 122  2234555554 4889999888899


Q ss_pred             EEEEe
Q 016318          385 VAVYD  389 (391)
Q Consensus       385 i~~~~  389 (391)
                      |.|+.
T Consensus       247 I~~i~  251 (260)
T d1rwia_         247 VVKLT  251 (260)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88875

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=2.7e-18  Score=155.74  Aligned_cols=244  Identities=16%  Similarity=0.288  Sum_probs=171.6

Q ss_pred             cccccCcceEEEccCCCeeEEEecCCEEEEEeCC-cee-EEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~  142 (391)
                      .|++..|.+|++|++|++++++..+++|.+++++ .+. .+....                 ........|.+++++.+.
T Consensus        19 ~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~-----------------~~~~~~~~p~~~~~~~~~   81 (279)
T d1q7fa_          19 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG-----------------KRDSQLLYPNRVAVVRNS   81 (279)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS-----------------SSTTCBSSEEEEEEETTT
T ss_pred             CCeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccC-----------------CCcccccccccccccccc
Confidence            4678899999999999966666788999999987 322 221110                 011123468899887645


Q ss_pred             CcEEEEECC-C-CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318          143 GDLYIADAY-F-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY  220 (391)
Q Consensus       143 g~L~V~d~~-~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~  220 (391)
                      +..+++... . .|.+++.++.....+    ....+..|.+++++++|++|+++..                 .+++.++
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~g~~~~~~----~~~~~~~p~~~avd~~G~i~v~~~~-----------------~~~~~~~  140 (279)
T d1q7fa_          82 GDIIVTERSPTHQIQIYNQYGQFVRKF----GATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIF  140 (279)
T ss_dssp             TEEEEEECGGGCEEEEECTTSCEEEEE----CTTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEE
T ss_pred             cccceeccCCccccccccccccceeec----CCCcccccceeccccCCcEEEEeec-----------------cceeeEe
Confidence            565555443 3 377888776544443    2233567999999999999999965                 4688999


Q ss_pred             eCCCCeEEEe--ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCCCCCceEeCCCCCEEEE
Q 016318          221 DPTTKQTTVL--LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       221 d~~~~~~~~~--~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g~p~~i~~d~~G~lwva  296 (391)
                      +++.+.+..+  ...+..|++++++++++ +|+++...++|++|+.+|..   ...+..  ....|.+|++|++|++||+
T Consensus       141 ~~~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G~~---~~~~g~~g~~~~P~giavD~~G~i~Va  216 (279)
T d1q7fa_         141 DQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIA  216 (279)
T ss_dssp             CTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEE
T ss_pred             ccCCceeecccccccccccceeeecccee-EEeeeccccceeeeecCCce---eeeecccccccCCcccccccCCeEEEE
Confidence            9876655554  24567899999999987 99999999999999977642   222321  1236899999999999999


Q ss_pred             EcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEE-EECCEE
Q 016318          297 IHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVE-EKDGKL  375 (391)
Q Consensus       297 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~-~~~g~L  375 (391)
                      ....+                                     ..+..|+++|+.+.++.....  ....+.++ ..+|+|
T Consensus       217 d~~~~-------------------------------------~~v~~f~~~G~~~~~~~~~~~--~~~p~~vav~~dG~l  257 (279)
T d1q7fa_         217 DNHNN-------------------------------------FNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSV  257 (279)
T ss_dssp             ECSSS-------------------------------------CEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEE
T ss_pred             ECCCC-------------------------------------cEEEEECCCCCEEEEEeCCCC--CCCEeEEEEeCCCcE
Confidence            75431                                     346778999998887754321  12234444 456899


Q ss_pred             EEecCCCCeEEEEeC
Q 016318          376 WMGSVLMPFVAVYDL  390 (391)
Q Consensus       376 ylgs~~~~~i~~~~~  390 (391)
                      |+.+ .++.|.+|+-
T Consensus       258 ~V~~-~n~~v~~fr~  271 (279)
T d1q7fa_         258 VLAS-KDYRLYIYRY  271 (279)
T ss_dssp             EEEE-TTTEEEEEEC
T ss_pred             EEEe-CCCeEEEEEe
Confidence            9998 5788988863

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=2.8e-17  Score=147.44  Aligned_cols=189  Identities=21%  Similarity=0.286  Sum_probs=138.6

Q ss_pred             cccccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      .+.+..|++|+++++|+ +|++...+.++++... ......                     .......|.+|++++ ++
T Consensus        53 ~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~~---------------------~~~~~~~p~~iavd~-~g  109 (260)
T d1rwia_          53 FNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVL---------------------PFDGLNYPEGLAVDT-QG  109 (260)
T ss_dssp             CCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEEC---------------------CCCSCCSEEEEEECT-TC
T ss_pred             cCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceeee---------------------eeeeeeecccccccc-cc
Confidence            34567899999999999 5666666666666544 222111                     011246799999998 88


Q ss_pred             cEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          144 DLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       144 ~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      ++|++|.... +++++..+........    ..+..|++|+++++|++|+++..                 +++++++++
T Consensus       110 ~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~g~~~v~~~~-----------------~~~i~~~d~  168 (260)
T d1rwia_         110 AVYVADRGNNRVVKLAAGSKTQTVLPF----TGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEA  168 (260)
T ss_dssp             CEEEEEGGGTEEEEECTTCSSCEECCC----CSCCSCCEEEECTTCCEEEEEGG-----------------GTEEEEECT
T ss_pred             eeEeeccccccccccccccceeeeeee----cccCCcceeeecCCCCEeeeccc-----------------ccccccccc
Confidence            9999997754 8888887654433321    22567899999999999999865                 478999999


Q ss_pred             CCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcCC
Q 016318          223 TTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       223 ~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      ++.....+. ..+..|+||+++++|+ |||++..+++|.++..++.   ....+.. .-..|.+|++|++|++||+....
T Consensus       169 ~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~---~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~  244 (260)
T d1rwia_         169 ESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGST---TSTVLPFTGLNTPLAVAVDSDRTVYVADRGN  244 (260)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCS---CCEECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred             ccceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCC---eEEEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence            877665554 6678999999999998 9999999999999975542   2222221 11368999999999999997765


Q ss_pred             C
Q 016318          301 R  301 (391)
Q Consensus       301 ~  301 (391)
                      +
T Consensus       245 ~  245 (260)
T d1rwia_         245 D  245 (260)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.62  E-value=1.1e-14  Score=133.85  Aligned_cols=187  Identities=14%  Similarity=0.190  Sum_probs=131.9

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      .|.+++++++|+.+|++...++|++++++ ....+.....                 .......|..+++|+ +|+|||+
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~-----------------~g~~~~~pndl~~d~-~G~lyvt  133 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDS-----------------EGRRMQGCNDCAFDY-EGNLWIT  133 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCT-----------------TSCBCBCCCEEEECT-TSCEEEE
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccc-----------------cccccCCCcEEEECC-CCCEEEe
Confidence            48899999999989999888899999988 4333321110                 001134588999998 8999999


Q ss_pred             ECCC----------------CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-----CEEEEeCCCcccchhheee
Q 016318          149 DAYF----------------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-----NVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       149 d~~~----------------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-----~ly~td~~~~~~~~~~~~~  207 (391)
                      |...                .|+++++++. ...+..     .+..||++++++++     .||++++.           
T Consensus       134 d~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-~~~~~~-----~~~~pNGi~~~~d~d~~~~~lyv~d~~-----------  196 (314)
T d1pjxa_         134 APAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDT-----AFQFPNGIAVRHMNDGRPYQLIVAETP-----------  196 (314)
T ss_dssp             ECBCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEE-----EESSEEEEEEEECTTSCEEEEEEEETT-----------
T ss_pred             cCccCcccccccceeccCCceEEEEeecCc-eeEeeC-----CcceeeeeEECCCCCcceeEEEEEeec-----------
Confidence            8531                3889988754 333332     24579999998765     49999965           


Q ss_pred             ecccCCCceEEEEeCC-CCeEE---Eec----cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC
Q 016318          208 VFSAEDTGRVLKYDPT-TKQTT---VLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP  279 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~-~~~~~---~~~----~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~  279 (391)
                            +++|++|+.. .+.+.   ++.    .....|.|++++++|+ |||++...++|++|+.++   +........|
T Consensus       197 ------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~---g~~~~~i~~p  266 (314)
T d1pjxa_         197 ------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDG---GQPKMRIRCP  266 (314)
T ss_dssp             ------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTC---BSCSEEEECS
T ss_pred             ------ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCC---CEEEEEEECC
Confidence                  5789998743 23322   121    1234688999999999 999998899999998665   3333333345


Q ss_pred             C-CCCceEeCCCCC-EEEEEcCCC
Q 016318          280 G-YPDNVRTNEKGE-FWVAIHCRR  301 (391)
Q Consensus       280 g-~p~~i~~d~~G~-lwva~~~~~  301 (391)
                      + .|.++++.++++ +||+.....
T Consensus       267 ~~~~t~~afg~d~~~lyVt~~~~g  290 (314)
T d1pjxa_         267 FEKPSNLHFKPQTKTIFVTEHENN  290 (314)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCEEEEEEeCCCCEEEEEECCCC
Confidence            3 588999999986 999876643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.7e-13  Score=122.54  Aligned_cols=186  Identities=18%  Similarity=0.163  Sum_probs=136.2

Q ss_pred             CcceEEEccC-CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           70 GPESMAFDPL-GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        70 gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      .+.+|++|.. +.++|++..++.|.+.+.+  ..+.+..                      ...+.|.||++|.-.++||
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~----------------------~~~~~p~~iAvD~~~~~lY   94 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR----------------------QDLGSPEGIALDHLGRTIF   94 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----------------------TTCCCEEEEEEETTTTEEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE----------------------eccccccEEEEeccCCeEE
Confidence            3557889865 4466777788999998765  2222211                      1146799999996578999


Q ss_pred             EEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318          147 IADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT  224 (391)
Q Consensus       147 V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  224 (391)
                      +++...+ |.++++++...+.+...    .+..|.++++|+ .|.+|+++.+               ...++|++.+.++
T Consensus        95 ~~d~~~~~I~~~~~dg~~~~~l~~~----~l~~p~~l~vdp~~g~ly~t~~~---------------~~~~~I~r~~~dG  155 (263)
T d1npea_          95 WTDSQLDRIEVAKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDG  155 (263)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTS
T ss_pred             EeccCCCEEEEEecCCceEEEEecc----cccCCcEEEEecccCcEEEeecC---------------CCCcEEEEecCCC
Confidence            9998754 99999987766555322    245789999998 6789999854               2245799998876


Q ss_pred             CeEEEe-ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318          225 KQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       225 ~~~~~~-~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      ...+.+ .+++..|+|+++++.++.||+++...++|.+++++|..   .+.+..-...|.+|+++ ++.+|++....
T Consensus       156 ~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~---~~~v~~~~~~P~~lav~-~~~lYwtd~~~  228 (263)
T d1npea_         156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---RRKVLEGLQYPFAVTSY-GKNLYYTDWKT  228 (263)
T ss_dssp             CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE---EEEEEECCCSEEEEEEE-TTEEEEEETTT
T ss_pred             CCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC---eEEEECCCCCcEEEEEE-CCEEEEEECCC
Confidence            654444 46788999999999988999999999999999988742   23333322368899998 57899988764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.56  E-value=1.9e-13  Score=125.79  Aligned_cols=148  Identities=14%  Similarity=0.250  Sum_probs=108.7

Q ss_pred             ceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccC
Q 016318          134 LGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      -|+++|+ +|+||++|...+ |+++++++++.........    ..|++|+++++|++|+++...             ..
T Consensus        43 EG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~----~~p~gla~~~dG~l~va~~~~-------------~~  104 (319)
T d2dg1a1          43 EGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHK----ANPAAIKIHKDGRLFVCYLGD-------------FK  104 (319)
T ss_dssp             EEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSS----SSEEEEEECTTSCEEEEECTT-------------SS
T ss_pred             EeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCC----CCeeEEEECCCCCEEEEecCC-------------Cc
Confidence            4899998 789999998766 9999999886554433222    358999999999999998541             12


Q ss_pred             CCceEEEEeCCCCeEEEeccC---CCCcceEEEccCCCEEEEEeCCC------CeEEEEEeccccCccceeecccCCCCC
Q 016318          213 DTGRVLKYDPTTKQTTVLLRN---LQFPNGLSLSKDKSFFVFCEGSV------GRLHKYWLIGEKAGNLEAFAILPGYPD  283 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~---~~~~ngia~~~d~~~l~v~et~~------~~I~~~~~~g~~~g~~~~~~~~~g~p~  283 (391)
                      ..++++.++..++........   ...||+++++++|+ +|+++...      +.+++++.++.   ..+.+..--..|+
T Consensus       105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~---~~~~~~~~~~~pn  180 (319)
T d2dg1a1         105 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR---TVTPIIQNISVAN  180 (319)
T ss_dssp             SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC---CEEEEEEEESSEE
T ss_pred             cceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccc---eeEEEeeccceee
Confidence            356899999988877665433   45789999999998 99997643      35888875542   2333332224689


Q ss_pred             ceEeCCCCC-EEEEEcCCCch
Q 016318          284 NVRTNEKGE-FWVAIHCRRSL  303 (391)
Q Consensus       284 ~i~~d~~G~-lwva~~~~~~~  303 (391)
                      +|+++++|+ +|++....+.+
T Consensus       181 Gia~s~dg~~lyvad~~~~~I  201 (319)
T d2dg1a1         181 GIALSTDEKVLWVTETTANRL  201 (319)
T ss_dssp             EEEECTTSSEEEEEEGGGTEE
T ss_pred             eeeeccccceEEEecccCCce
Confidence            999999997 99998765443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.4e-13  Score=118.53  Aligned_cols=192  Identities=14%  Similarity=0.147  Sum_probs=138.7

Q ss_pred             ccCcceEEEccCCC-eeEEEecCCEEEEEeCCcee---EEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318           68 IQGPESMAFDPLGR-GPYTGVADGRILFWDGLKWT---DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (391)
Q Consensus        68 ~~gPe~i~~d~~G~-~ly~~~~~g~I~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g  143 (391)
                      +..|.+|.+|..++ ++|++...+.|.+.+.+...   ....                   ........|.||++|...+
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~-------------------~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-------------------VISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE-------------------EECSSCSCCCEEEEETTTT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEE-------------------EEeCCCCCcceEEEeeccc
Confidence            55788899997554 66777788899988654110   0000                   0111246799999997688


Q ss_pred             cEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          144 DLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       144 ~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      +||++|...+ |.+++.++...+.+...    ....|.+|++|+ +|.+|+++.+.                .++|++.+
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~----~~~~P~~l~vd~~~g~ly~~~~~~----------------~~~I~r~~  149 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGG  149 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcC----CCCCcceEEEEcccCeEEEeccCC----------------CcceeEec
Confidence            9999998865 99999987765554332    134689999998 78999998542                36899999


Q ss_pred             CCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-cc--CCCCCceEeCCCCCEEEEE
Q 016318          222 PTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-IL--PGYPDNVRTNEKGEFWVAI  297 (391)
Q Consensus       222 ~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~--~g~p~~i~~d~~G~lwva~  297 (391)
                      .++...+++. +.+..|+|+++++.++.||+++...++|.+++++|..   .+.+. ..  ...|.+|+++ ++.+|++.
T Consensus       150 ~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~---~~~~~~~~~~~~~p~~lav~-~~~ly~td  225 (266)
T d1ijqa1         150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTD  225 (266)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEE
T ss_pred             cCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC---EEEEEeCCCcccccEEEEEE-CCEEEEEE
Confidence            9877666664 5678999999999988999999999999999998842   23332 21  2357889998 57799887


Q ss_pred             cCCCc
Q 016318          298 HCRRS  302 (391)
Q Consensus       298 ~~~~~  302 (391)
                      .....
T Consensus       226 ~~~~~  230 (266)
T d1ijqa1         226 IINEA  230 (266)
T ss_dssp             TTTTE
T ss_pred             CCCCe
Confidence            66543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1e-11  Score=111.00  Aligned_cols=201  Identities=14%  Similarity=0.155  Sum_probs=129.6

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheee
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~  207 (391)
                      ...|.+|.+|..++.||.+|...+ |++.+.++..........-......|.+||+|. .++||+++..           
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~-----------   97 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV-----------   97 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT-----------
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC-----------
Confidence            456789999986788999998755 888877643211110110111245789999997 6789999965           


Q ss_pred             ecccCCCceEEEEeCCCCeEEEe-ccCCCCcceEEEccCCCEEEEEeCCC-CeEEEEEeccccCccceeec-ccCCCCCc
Q 016318          208 VFSAEDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFA-ILPGYPDN  284 (391)
Q Consensus       208 ~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngia~~~d~~~l~v~et~~-~~I~~~~~~g~~~g~~~~~~-~~~g~p~~  284 (391)
                            .+++.+++.++.....+ ...+..|.+++++|...++|+++... .+|.|.+++|..   .+.+. ..-..|.+
T Consensus        98 ------~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~---~~~l~~~~~~~p~g  168 (266)
T d1ijqa1          98 ------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNG  168 (266)
T ss_dssp             ------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEE
T ss_pred             ------CCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc---eecccccccceeeE
Confidence                  46899999887765554 45678899999999888899998654 589999998842   23333 22256899


Q ss_pred             eEeCCCC-CEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEE-EEeCCCCCee
Q 016318          285 VRTNEKG-EFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQ-VLEDSKGKVV  362 (391)
Q Consensus       285 i~~d~~G-~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~-~~~~~~g~~~  362 (391)
                      |++|..+ ++|++.....                                      .+.+.+.+|.-.. ......+  .
T Consensus       169 l~iD~~~~~lYw~d~~~~--------------------------------------~I~~~~~dG~~~~~~~~~~~~--~  208 (266)
T d1ijqa1         169 ITLDLLSGRLYWVDSKLH--------------------------------------SISSIDVNGGNRKTILEDEKR--L  208 (266)
T ss_dssp             EEEETTTTEEEEEETTTT--------------------------------------EEEEEETTSCSCEEEEECTTT--T
T ss_pred             EEeeccccEEEEecCCcC--------------------------------------EEEEEECCCCCEEEEEeCCCc--c
Confidence            9999755 4888765432                                      2444455553222 2222222  1


Q ss_pred             eceeEEEEECCEEEEecCCCCeEEEEeC
Q 016318          363 KAISEVEEKDGKLWMGSVLMPFVAVYDL  390 (391)
Q Consensus       363 ~~is~~~~~~g~Lylgs~~~~~i~~~~~  390 (391)
                      .....+..++++||........|-++++
T Consensus       209 ~~p~~lav~~~~ly~td~~~~~I~~~~~  236 (266)
T d1ijqa1         209 AHPFSLAVFEDKVFWTDIINEAIFSANR  236 (266)
T ss_dssp             SSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             cccEEEEEECCEEEEEECCCCeEEEEEC
Confidence            1233455667778877777777777653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=1e-12  Score=118.29  Aligned_cols=187  Identities=18%  Similarity=0.293  Sum_probs=125.6

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccC-CCcccCCcceeecCC-CCEEEEeCCCcccchhhee
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAE-GVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQ  206 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~-~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~  206 (391)
                      ..+|.||++++ +|+|||+|..+. |.++|+++..++.+..... ......|.+++.+.+ +..+++..+          
T Consensus        22 f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----------   90 (279)
T d1q7fa_          22 FTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----------   90 (279)
T ss_dssp             BSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----------
T ss_pred             ECCccEEEEcC-CCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC----------
Confidence            56799999998 899999998755 9999998766655543221 223457888887654 555555432          


Q ss_pred             eecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCCCCC
Q 016318          207 LVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGYPD  283 (391)
Q Consensus       207 ~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g~p~  283 (391)
                            .++++.+++........+. ..+..|++++++++++ +|+++....++.+++.+|..   ...+..  ....|.
T Consensus        91 ------~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~~---~~~~g~~~~~~~~~  160 (279)
T d1q7fa_          91 ------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV---LHKFGCSKHLEFPN  160 (279)
T ss_dssp             ------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE---EEEEECTTTCSSEE
T ss_pred             ------CccccccccccccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCce---eecccccccccccc
Confidence                  2467888888766555553 4467899999999998 89999989999999765521   122221  124678


Q ss_pred             ceEeCCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEE
Q 016318          284 NVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKIL  351 (391)
Q Consensus       284 ~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~  351 (391)
                      ++++|++|++|++....+.+     ..+...++.+..+..+..         ..++.-+++|++|+++
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V-----~~~d~~G~~~~~~g~~g~---------~~~P~giavD~~G~i~  214 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCV-----KVFNYEGQYLRQIGGEGI---------TNYPIGVGINSNGEIL  214 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEE-----EEEETTCCEEEEESCTTT---------SCSEEEEEECTTCCEE
T ss_pred             eeeeccceeEEeeeccccce-----eeeecCCceeeeeccccc---------ccCCcccccccCCeEE
Confidence            89999999999998775543     235556666655532211         2223445566666644

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=2.2e-11  Score=108.52  Aligned_cols=195  Identities=16%  Similarity=0.160  Sum_probs=137.5

Q ss_pred             CccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeee
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      ..+.||++|..++.||++|...+ |++++.+++..+.+...    ....|.+|++|. .++||+++..            
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~----~~~~p~~iAvD~~~~~lY~~d~~------------   99 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ----DLGSPEGIALDHLGRTIFWTDSQ------------   99 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT----TCCCEEEEEEETTTTEEEEEETT------------
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe----ccccccEEEEeccCCeEEEeccC------------
Confidence            44678999976788999998866 99999988776665432    134689999997 6799999964            


Q ss_pred             cccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCce
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNV  285 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i  285 (391)
                           .+++.+.+.++...+++. .++..|.+++++|...++|+++...  .+|+|.+++|..  ........-..|.+|
T Consensus       100 -----~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~--~~~i~~~~~~~P~gl  172 (263)
T d1npea_         100 -----LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGL  172 (263)
T ss_dssp             -----TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSCEEEE
T ss_pred             -----CCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC--ceeeeeecccccceE
Confidence                 468999998877665554 5578999999999999999998754  469999988742  222222222478999


Q ss_pred             EeCCCCC-EEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeec
Q 016318          286 RTNEKGE-FWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA  364 (391)
Q Consensus       286 ~~d~~G~-lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~  364 (391)
                      ++|..++ +|++....+                                      .+.+.+.+|...+..-.  +.  ..
T Consensus       173 aiD~~~~~lYw~d~~~~--------------------------------------~I~~~~~~g~~~~~v~~--~~--~~  210 (263)
T d1npea_         173 TFDAFSSQLCWVDAGTH--------------------------------------RAECLNPAQPGRRKVLE--GL--QY  210 (263)
T ss_dssp             EEETTTTEEEEEETTTT--------------------------------------EEEEEETTEEEEEEEEE--CC--CS
T ss_pred             EEeecCcEEEEEeCCCC--------------------------------------EEEEEECCCCCeEEEEC--CC--CC
Confidence            9996654 888765432                                      24445556654443322  11  12


Q ss_pred             eeEEEEECCEEEEecCCCCeEEEEeC
Q 016318          365 ISEVEEKDGKLWMGSVLMPFVAVYDL  390 (391)
Q Consensus       365 is~~~~~~g~Lylgs~~~~~i~~~~~  390 (391)
                      ...+..++++||.....+..|-++++
T Consensus       211 P~~lav~~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         211 PFAVTSYGKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             cEEEEEECCEEEEEECCCCEEEEEEC
Confidence            33566678888888888888887764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.37  E-value=8.2e-12  Score=113.56  Aligned_cols=187  Identities=10%  Similarity=-0.014  Sum_probs=127.1

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      .+|.+++++++|+++.++..++.+.+++..    ....+...                     .....|.++++++ +++
T Consensus        68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~n~i~~~~-~g~  125 (302)
T d2p4oa1          68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL---------------------PDAIFLNGITPLS-DTQ  125 (302)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC---------------------TTCSCEEEEEESS-SSE
T ss_pred             CCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecccc---------------------CCccccceeEEcc-CCC
Confidence            578999999999944445556666666432    22222211                     1246689999998 899


Q ss_pred             EEEEECCCC-eEEEeCCCCeeEEceecc------CCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceE
Q 016318          145 LYIADAYFG-LMKVGPEGGLATSLATEA------EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRV  217 (391)
Q Consensus       145 L~V~d~~~g-l~~~d~~~g~~~~~~~~~------~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l  217 (391)
                      +|+++...+ ++++++.++.........      .......++++..+. +.+|++++.                 .+++
T Consensus       126 ~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~-----------------~~~i  187 (302)
T d2p4oa1         126 YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTE-----------------KMLL  187 (302)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETT-----------------TTEE
T ss_pred             EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCC-----------------CCeE
Confidence            999998765 999999988766543211      112345678888774 589999865                 5789


Q ss_pred             EEEeCCCCeEE---EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc--C-CCCCceEeC---
Q 016318          218 LKYDPTTKQTT---VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--P-GYPDNVRTN---  288 (391)
Q Consensus       218 ~~~d~~~~~~~---~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~--~-g~p~~i~~d---  288 (391)
                      ++++.......   ........|.|+++++||+ ||+++...++|+|++.+|    +...+.+.  + ..|.+++++   
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G----~~~~~~~~~~~~~~pt~vafg~~~  262 (302)
T d2p4oa1         188 LRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR----STTIIAQAEQGVIGSTAVAFGQTE  262 (302)
T ss_dssp             EEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC----CEEEEECGGGTCTTEEEEEECCST
T ss_pred             EeccccccccccccccccCCCCCcceEECCCCC-EEEEEcCCCcEEEECCCC----CEEEEEecCCCCCCceEEEEcCCC
Confidence            99987543221   1122356789999999998 999988889999997655    33333321  1 247889995   


Q ss_pred             CCCC-EEEEEcCC
Q 016318          289 EKGE-FWVAIHCR  300 (391)
Q Consensus       289 ~~G~-lwva~~~~  300 (391)
                      +|++ +||++..+
T Consensus       263 ~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         263 GDCTAIYVVTNGG  275 (302)
T ss_dssp             TTTTEEEEEECTT
T ss_pred             CCCCEEEEECCCC
Confidence            4554 99987664

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.31  E-value=1.1e-10  Score=105.83  Aligned_cols=196  Identities=16%  Similarity=0.135  Sum_probs=129.6

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      .|.+++.+++|+ +|+++.+ +|++++++  +++.+....                  ......+|..+.+|+ +|++|+
T Consensus        60 ~~~~i~~~~dg~-l~va~~~-gl~~~d~~tg~~~~l~~~~------------------~~~~~~~~nd~~vd~-~G~iw~  118 (295)
T d2ghsa1          60 MGSALAKISDSK-QLIASDD-GLFLRDTATGVLTLHAELE------------------SDLPGNRSNDGRMHP-SGALWI  118 (295)
T ss_dssp             CEEEEEEEETTE-EEEEETT-EEEEEETTTCCEEEEECSS------------------TTCTTEEEEEEEECT-TSCEEE
T ss_pred             CcEEEEEecCCC-EEEEEeC-ccEEeecccceeeEEeeee------------------cCCCcccceeeEECC-CCCEEE
Confidence            677899999998 7777765 69999987  455443221                  111246789999999 899999


Q ss_pred             EECCC-------CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          148 ADAYF-------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       148 ~d~~~-------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      ++...       .+++++  .++++.+...     +..+|+++.++++ .+|++++.                 .++|++
T Consensus       119 ~~~~~~~~~~~g~l~~~~--~g~~~~~~~~-----~~~~Ng~~~s~d~~~l~~~dt~-----------------~~~I~~  174 (295)
T d2ghsa1         119 GTMGRKAETGAGSIYHVA--KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDTK-----------------VNRLMR  174 (295)
T ss_dssp             EEEETTCCTTCEEEEEEE--TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEETT-----------------TCEEEE
T ss_pred             EeccccccccceeEeeec--CCcEEEEeec-----cCCcceeeecCCCceEEEeecc-----------------cceeeE
Confidence            97531       256654  3555554332     4579999999988 49999965                 478888


Q ss_pred             EeCC--C----CeEEEec---cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC-CCCceEeC-
Q 016318          220 YDPT--T----KQTTVLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-YPDNVRTN-  288 (391)
Q Consensus       220 ~d~~--~----~~~~~~~---~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g-~p~~i~~d-  288 (391)
                      |+.+  .    ++...+.   .....|.|++++.+|+ ||++....++|.+|+.+|.    ......+|. .|.++++. 
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G~----~~~~i~lP~~~~T~~~FGG  249 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGN----HIARYEVPGKQTTCPAFIG  249 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCC----EEEEEECSCSBEEEEEEES
T ss_pred             eeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCCCc----EeeEecCCCCceEEEEEeC
Confidence            7643  2    1222222   2345799999999999 9999888899999986653    222234553 57888885 


Q ss_pred             CCCC-EEEEEcCCCchhhhhhhcCcccee
Q 016318          289 EKGE-FWVAIHCRRSLYSHLMALYPKIRH  316 (391)
Q Consensus       289 ~~G~-lwva~~~~~~~~~~~l~~~~~~~~  316 (391)
                      ++++ |||++...... ...+..+|..|.
T Consensus       250 ~d~~~LyvTta~~~~~-~~~~~~~p~~G~  277 (295)
T d2ghsa1         250 PDASRLLVTSAREHLD-DDAITANPQHGL  277 (295)
T ss_dssp             TTSCEEEEEEBCTTCC-HHHHHHCTTTTC
T ss_pred             CCCCEEEEEECCcCCC-hhHhccCCCCce
Confidence            4443 99987643221 112344554444

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.28  E-value=2.9e-09  Score=94.38  Aligned_cols=229  Identities=12%  Similarity=0.161  Sum_probs=144.3

Q ss_pred             cCcceEEEccCCCeeEE-EecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           69 QGPESMAFDPLGRGPYT-GVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~-~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      ..|.++++++||+.+|+ +..+++|..|+....+.+....                     ....|.++++++++..+++
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~   90 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---------------------AGSSPQGVAVSPDGKQVYV   90 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---------------------CSSSEEEEEECTTSSEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee---------------------ccccccccccccccccccc
Confidence            47999999999997775 4567899999987333332211                     1356889999984445777


Q ss_pred             EECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEE-EeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          148 ADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYF-TDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       148 ~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~-td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      +....+ +..++..+++.......     ...+..++++++|+.++ +...                 +..+..++..++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~dg~~~~~~~~~-----------------~~~~~~~~~~~~  148 (301)
T d1l0qa2          91 TNMASSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTK  148 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTT
T ss_pred             cccccceeeecccccceeeeeccc-----cccceEEEeecCCCeeeeeecc-----------------ccceeeeecccc
Confidence            766644 77778887754433222     13467889999987554 4432                 356788888888


Q ss_pred             eEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEcCCC--c
Q 016318          226 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCRR--S  302 (391)
Q Consensus       226 ~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~--~  302 (391)
                      +..........|..++++++++.++++......+........   ...........|.+++++++|+ +|++.....  .
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~  225 (301)
T d1l0qa2         149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT  225 (301)
T ss_dssp             EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred             ceeeecccCCCceEEEeeccccceeeecccccccccccccce---eeeecccccCCcceeeccccccccccccccceeee
Confidence            776666666778999999999999999877666666654331   1111122345688899999998 556544321  1


Q ss_pred             hhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCC
Q 016318          303 LYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKG  359 (391)
Q Consensus       303 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g  359 (391)
                      +..+    ....++++.+++..            ....-++++++|+.+++-...++
T Consensus       226 v~v~----D~~t~~~~~~~~~~------------~~~~~va~spdg~~l~va~~~~~  266 (301)
T d1l0qa2         226 VSMI----DTGTNKITARIPVG------------PDPAGIAVTPDGKKVYVALSFCN  266 (301)
T ss_dssp             EEEE----ETTTTEEEEEEECC------------SSEEEEEECTTSSEEEEEETTTT
T ss_pred             eeee----ecCCCeEEEEEcCC------------CCEEEEEEeCCCCEEEEEECCCC
Confidence            1111    12233444444321            22345667888876654444344

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.27  E-value=6.1e-09  Score=92.24  Aligned_cols=172  Identities=15%  Similarity=0.169  Sum_probs=115.7

Q ss_pred             eE-EEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC-eEEEeCC
Q 016318           83 PY-TGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPE  160 (391)
Q Consensus        83 ly-~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~  160 (391)
                      +| ++..++.|..+|.+..+.....                     ...+.|.++++++++..|||++...+ |..+|..
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i---------------------~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATI---------------------PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEE---------------------ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEE---------------------ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            44 4567789999998733322211                     12467999999994445889887654 9999999


Q ss_pred             CCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcce
Q 016318          161 GGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNG  239 (391)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng  239 (391)
                      +++.......     ...+.+++++++|. ++++...                 .+.+..++..+++..........+..
T Consensus        63 t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (301)
T d1l0qa2          63 TNNVIATVPA-----GSSPQGVAVSPDGKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLG  120 (301)
T ss_dssp             TTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             CCceeeeeec-----cccccccccccccccccccccc-----------------cceeeecccccceeeeeccccccceE
Confidence            8864432211     13578899999986 5555432                 45788889888887766666678889


Q ss_pred             EEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEcCC
Q 016318          240 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCR  300 (391)
Q Consensus       240 ia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~  300 (391)
                      +++++|++.++++......+..++....   ...........|..++.++++. +|++....
T Consensus       121 ~~~~~dg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (301)
T d1l0qa2         121 LALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTVSVGRSPKGIAVTPDGTKVYVANFDS  179 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred             EEeecCCCeeeeeeccccceeeeecccc---ceeeecccCCCceEEEeeccccceeeecccc
Confidence            9999999998888777777777764431   1111112233577888888887 66665443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.08  E-value=3.1e-08  Score=91.89  Aligned_cols=192  Identities=11%  Similarity=0.097  Sum_probs=111.0

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEE--eCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFW--DGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      ..|..|+++++|+.+|+...+ .+..+  +.+ ........                     ...+.|..+.+++++..+
T Consensus        40 ~~~s~la~s~d~~~ly~~~~~-~~~~~~i~~~~~~~~~~~~---------------------~~~~~p~~v~~~~~~~~~   97 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH---------------------PIGGHPRANDADTNTRAI   97 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE---------------------ECCSSGGGGCTTSCCEEE
T ss_pred             CCCCEEEEcCCCCEEEEEeCC-cEEEEEEeCCCCeEEEeee---------------------cCCCCcEEEEECCCCCEE
Confidence            356789999999989987654 45544  333 22211110                     123557777887744456


Q ss_pred             EEEECCC--C-eEEE--eCCCCeeEEce-----------eccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeee
Q 016318          146 YIADAYF--G-LMKV--GPEGGLATSLA-----------TEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       146 ~V~d~~~--g-l~~~--d~~~g~~~~~~-----------~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~  208 (391)
                      ||..+..  + +..+  ...++....+.           ...+-+....+.+++++++|+ +|+++.+            
T Consensus        98 ~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g------------  165 (365)
T d1jofa_          98 FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT------------  165 (365)
T ss_dssp             EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------
T ss_pred             EEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC------------
Confidence            7765432  2 4332  22222222111           000111223578999999996 8888854            


Q ss_pred             cccCCCceEEEEeC-CCCeEEEe-----ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC---
Q 016318          209 FSAEDTGRVLKYDP-TTKQTTVL-----LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP---  279 (391)
Q Consensus       209 ~~~~~~g~l~~~d~-~~~~~~~~-----~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~---  279 (391)
                           ..+|+.|+. .++.....     ......|.+++++||++++|++....+.|..|+.+..+..........+   
T Consensus       166 -----~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~  240 (365)
T d1jofa_         166 -----ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP  240 (365)
T ss_dssp             -----TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred             -----CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccc
Confidence                 346666542 23333222     1224578999999999999999998999999988754322111111110   


Q ss_pred             --------------CCCCceEeCCCCC-EEEEEcC
Q 016318          280 --------------GYPDNVRTNEKGE-FWVAIHC  299 (391)
Q Consensus       280 --------------g~p~~i~~d~~G~-lwva~~~  299 (391)
                                    ..+..|.++++|+ +|++...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~  275 (365)
T d1jofa_         241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             ccccccccccccccCCccceEECCCCCEEEEEccc
Confidence                          1234688999998 6776544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=7.7e-08  Score=86.30  Aligned_cols=192  Identities=15%  Similarity=0.219  Sum_probs=113.2

Q ss_pred             cCcceEEEccCCCeeEEEec-CCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           69 QGPESMAFDPLGRGPYTGVA-DGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      ..|.+|+++|||+.||++.. +++|..|+-+   ....+..                    .......|.++++++++..
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~--------------------~~~~~~~p~~l~~spDg~~   96 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA--------------------ESALPGSLTHISTDHQGQF   96 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE--------------------EEECSSCCSEEEECTTSSE
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee--------------------ecccCCCceEEEEcCCCCE
Confidence            36899999999998888775 6878776432   1111111                    1112456899999995556


Q ss_pred             EEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          145 LYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       145 L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      ||+++...+ +..++.+............  ....+.+++++++|+ ++.++..                 ...+..|+.
T Consensus        97 l~v~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~v~~s~d~~~~~~~~~~-----------------~~~i~~~~~  157 (333)
T d1ri6a_          97 VFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALK-----------------QDRICLFTV  157 (333)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEE
T ss_pred             EeecccCCCceeeeccccccceecccccC--CCccceEEEeeecceeeeccccc-----------------cceeeEEEe
Confidence            899887655 5555555444333222111  123578899999986 4555422                 234555554


Q ss_pred             CCCeEEE-------eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccce---eecccC------CCCCceE
Q 016318          223 TTKQTTV-------LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE---AFAILP------GYPDNVR  286 (391)
Q Consensus       223 ~~~~~~~-------~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~---~~~~~~------g~p~~i~  286 (391)
                      .+.....       .......|..+++++++..+|++....+....+...... ....   .....+      ..|..++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH-GNIECVQTLDMMPENFSDTRWAADIH  236 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT-SCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccc-cceeeeeeeeeeecCCCccccceeEE
Confidence            4332111       112335678999999999999887777776666644321 1111   111111      2345678


Q ss_pred             eCCCCC-EEEEEcCC
Q 016318          287 TNEKGE-FWVAIHCR  300 (391)
Q Consensus       287 ~d~~G~-lwva~~~~  300 (391)
                      ++++|+ +|++....
T Consensus       237 ~s~d~~~~~~~~~~~  251 (333)
T d1ri6a_         237 ITPDGRHLYACDRTA  251 (333)
T ss_dssp             ECTTSSEEEEEETTT
T ss_pred             EecccCceeeecccC
Confidence            899998 55554443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.87  E-value=1.3e-07  Score=87.57  Aligned_cols=208  Identities=14%  Similarity=0.073  Sum_probs=114.0

Q ss_pred             cCcceEEEccCCCeeEEEec---CCEEEEEeC--C--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC
Q 016318           69 QGPESMAFDPLGRGPYTGVA---DGRILFWDG--L--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~---~g~I~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~  141 (391)
                      .+|+.++++++|+.+|+...   .+.+..+..  .  ....+............      ..... .....|+++.++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-q~~~h~h~v~~sPd  155 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV------QNYEY-QENTGIHGMVFDPT  155 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE------EEEEC-CTTCCEEEEEECTT
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcc------cCccc-CCCCcceEEEECCC
Confidence            47999999999987777554   245554321  1  11111111000000000      00000 12345899999995


Q ss_pred             CCcEEEEECCCC-eEEEeCC-CCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEE
Q 016318          142 TGDLYIADAYFG-LMKVGPE-GGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVL  218 (391)
Q Consensus       142 ~g~L~V~d~~~g-l~~~d~~-~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~  218 (391)
                      +..||++|.+.. |++++.+ ++.+..........+...|.+++++++|+ +|++...                 ++.|.
T Consensus       156 G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~-----------------~~~V~  218 (365)
T d1jofa_         156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA-----------------GNRIC  218 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEE
T ss_pred             CCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC-----------------CCEEE
Confidence            556999998754 6665432 34443332222222345799999999996 7777643                 45666


Q ss_pred             EEeCCCCeE--EEe------cc------------CCCCcceEEEccCCCEEEEEeCCCC-----eEEEEEeccccCccce
Q 016318          219 KYDPTTKQT--TVL------LR------------NLQFPNGLSLSKDKSFFVFCEGSVG-----RLHKYWLIGEKAGNLE  273 (391)
Q Consensus       219 ~~d~~~~~~--~~~------~~------------~~~~~ngia~~~d~~~l~v~et~~~-----~I~~~~~~g~~~g~~~  273 (391)
                      .|+.++++.  ...      ..            ....+..|+++|||++||++....+     .|..+.+...  +...
T Consensus       219 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~--g~~~  296 (365)
T d1jofa_         219 EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC--GSIE  296 (365)
T ss_dssp             EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT--SCEE
T ss_pred             EEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCC--Ccee
Confidence            655443321  111      00            0112557999999999999965433     3777765432  2221


Q ss_pred             ---eecc---cCCCCCceEeCC-CCC-EEEEEcCCCc
Q 016318          274 ---AFAI---LPGYPDNVRTNE-KGE-FWVAIHCRRS  302 (391)
Q Consensus       274 ---~~~~---~~g~p~~i~~d~-~G~-lwva~~~~~~  302 (391)
                         .+..   .-+.|.+|++++ +|+ +||+......
T Consensus       297 ~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~  333 (365)
T d1jofa_         297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             eEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCe
Confidence               1111   124799999986 788 6677555443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.86  E-value=1.2e-06  Score=78.10  Aligned_cols=156  Identities=13%  Similarity=0.018  Sum_probs=102.2

Q ss_pred             eeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC-eEEEeCC
Q 016318           82 GPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPE  160 (391)
Q Consensus        82 ~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~  160 (391)
                      .+++++.+++|..||....+.....                  ........|.++++++++..|||+....+ |..+|..
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i------------------~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~   64 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEE------------------ECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECC
Confidence            4788899999999998843333222                  11122466899999994445788876655 9999999


Q ss_pred             CCeeEEceecc-CCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcc
Q 016318          161 GGLATSLATEA-EGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPN  238 (391)
Q Consensus       161 ~g~~~~~~~~~-~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~n  238 (391)
                      +++...-.... .......+.++++.++|+ +|++.....      ............+..+|..+++..........++
T Consensus        65 t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  138 (337)
T d1pbyb_          65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVR------LELTHFEVQPTRVALYDAETLSRRKAFEAPRQIT  138 (337)
T ss_dssp             TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEE------ECSSCEEECCCEEEEEETTTTEEEEEEECCSSCC
T ss_pred             CCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCc------ceeeeccccccceeeccccCCeEEEeccccCCce
Confidence            88765432221 122245788999999985 666542210      0011112234678889999888776666667899


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318          239 GLSLSKDKSFFVFCEGSVGRLHKYWL  264 (391)
Q Consensus       239 gia~~~d~~~l~v~et~~~~I~~~~~  264 (391)
                      ++++++||++++++.   +.+..++.
T Consensus       139 ~~~~s~dg~~l~~~~---~~~~~~d~  161 (337)
T d1pbyb_         139 MLAWARDGSKLYGLG---RDLHVMDP  161 (337)
T ss_dssp             CEEECTTSSCEEEES---SSEEEEET
T ss_pred             EEEEcCCCCEEEEEc---CCcceeee
Confidence            999999999888873   23445553

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.7e-06  Score=76.74  Aligned_cols=185  Identities=9%  Similarity=0.001  Sum_probs=117.8

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE-EEE
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YIA  148 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L-~V~  148 (391)
                      .++++.++|+.++++..||.|..|+..  .........                    ........+.+++ ++.+ ..+
T Consensus       101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~~l~s~  159 (337)
T d1gxra_         101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT--------------------SSAPACYALAISP-DSKVCFSC  159 (337)
T ss_dssp             EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE--------------------CSSSCEEEEEECT-TSSEEEEE
T ss_pred             EEEEEcCCCCEEEEeecccccccccccccccccccccc--------------------ccccccccccccc-cccccccc
Confidence            578999999989999999999999865  211111110                    1123345677887 4554 444


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      .....+..++..+++........    ......+++.++|+..++.+.                 ++.+..||..+++..
T Consensus       160 ~~d~~i~~~~~~~~~~~~~~~~~----~~~v~~l~~s~~~~~~~~~~~-----------------d~~v~i~d~~~~~~~  218 (337)
T d1gxra_         160 CSDGNIAVWDLHNQTLVRQFQGH----TDGASCIDISNDGTKLWTGGL-----------------DNTVRSWDLREGRQL  218 (337)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEE
T ss_pred             ccccccccccccccccccccccc----ccccccccccccccccccccc-----------------cccccccccccceee
Confidence            44456889998887654432221    124567888888876555432                 478889998887765


Q ss_pred             EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          229 VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       229 ~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                      ...........++++|+++.++++ +..+.|..+++....   ........+....++++++|++.++....+.
T Consensus       219 ~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~i~d~~~~~---~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~  288 (337)
T d1gxra_         219 QQHDFTSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cccccccceEEEEEccccccccee-ccccccccccccccc---cccccccccccceEEECCCCCEEEEEeCCCe
Confidence            444444456789999999977665 456788888865431   1111112234567888999997776554433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=8.5e-07  Score=79.21  Aligned_cols=147  Identities=12%  Similarity=0.087  Sum_probs=93.1

Q ss_pred             cCccceEEEecCCCcEEEEECCCC-eEE--EeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhhe
Q 016318          130 CGRPLGLRFDKKTGDLYIADAYFG-LMK--VGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFM  205 (391)
Q Consensus       130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~--~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~  205 (391)
                      .+.|.+|+|++++..||++....+ |..  ++..+...+.......   ...|.++++++||+ +|+++..         
T Consensus        36 ~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~---~~~p~~l~~spDg~~l~v~~~~---------  103 (333)
T d1ri6a_          36 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL---PGSLTHISTDHQGQFVFVGSYN---------  103 (333)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---SSCCSEEEECTTSSEEEEEETT---------
T ss_pred             CCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc---CCCceEEEEcCCCCEEeecccC---------
Confidence            467899999995556899987644 554  4545444443322211   23588999999996 6666532         


Q ss_pred             eeecccCCCceEEEEeCCCCeEEEe---ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceee--cc-cC
Q 016318          206 QLVFSAEDTGRVLKYDPTTKQTTVL---LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF--AI-LP  279 (391)
Q Consensus       206 ~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~--~~-~~  279 (391)
                              .+.+..++.........   ......+.++++++|++.++++......|..++............  .. ..
T Consensus       104 --------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  175 (333)
T d1ri6a_         104 --------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE  175 (333)
T ss_dssp             --------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST
T ss_pred             --------CCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeec
Confidence                    34566665544443332   234457889999999999999988888899888654321111111  11 11


Q ss_pred             -CCCCceEeCCCCCEEEE
Q 016318          280 -GYPDNVRTNEKGEFWVA  296 (391)
Q Consensus       280 -g~p~~i~~d~~G~lwva  296 (391)
                       ..|..+++++++.....
T Consensus       176 g~~p~~i~~~~~~~~~~~  193 (333)
T d1ri6a_         176 GAGPRHMVFHPNEQYAYC  193 (333)
T ss_dssp             TCCEEEEEECTTSSEEEE
T ss_pred             CCCccEEEEeccceeEEe
Confidence             35778999998885443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.77  E-value=2.3e-06  Score=75.38  Aligned_cols=199  Identities=18%  Similarity=0.199  Sum_probs=120.4

Q ss_pred             eeccccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC
Q 016318           62 IKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (391)
Q Consensus        62 ~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~  141 (391)
                      ++..|--..-.+++++++|+.++++..||.|..|+...........                   ........++++.+ 
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~-------------------~~h~~~v~~v~~~~-   65 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP-------------------DVHATMITGIKTTS-   65 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS-------------------CSCSSCEEEEEECT-
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-------------------CCCCCcEEEEEeec-
Confidence            3444544566789999999999999999999999876222221110                   01123456889998 


Q ss_pred             CCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          142 TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       142 ~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      +++++++.....+..++............. ......+..+++.++|++.++...                  +.+..|+
T Consensus        66 ~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~~~~~~------------------~~i~~~~  126 (299)
T d1nr0a2          66 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVA-NKLSSQPLGLAVSADGDIAVAACY------------------KHIAIYS  126 (299)
T ss_dssp             TSCEEEEETTTEEEEECSSSSSSCTTSCCE-EECSSCEEEEEECTTSSCEEEEES------------------SEEEEEE
T ss_pred             cceeecccceeeEEEeccCCcccccccccc-cccccccccccccccccccccccc------------------ccccccc
Confidence            788888877677888876544322111100 011234567888889887666532                  4666776


Q ss_pred             CCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCC
Q 016318          222 PTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       222 ~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~  301 (391)
                      ..  +..... .......++++|+++.+.++ +..+.|..+++.+......... ..++....++++++|.+.++.....
T Consensus       127 ~~--~~~~~~-~~~~~~~~~~s~~~~~l~~g-~~dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~  201 (299)
T d1nr0a2         127 HG--KLTEVP-ISYNSSCVALSNDKQFVAVG-GQDSKVHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQSR  201 (299)
T ss_dssp             TT--EEEEEE-CSSCEEEEEECTTSCEEEEE-ETTSEEEEEEEETTEEEEEEEE-ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cc--cccccc-cccccccccccccccccccc-cccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence            43  222221 12345678999999976665 5567888888765321111111 1233456788899998766655544


Q ss_pred             chh
Q 016318          302 SLY  304 (391)
Q Consensus       302 ~~~  304 (391)
                      .+.
T Consensus       202 ~i~  204 (299)
T d1nr0a2         202 KVI  204 (299)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.71  E-value=8.2e-06  Score=72.99  Aligned_cols=186  Identities=13%  Similarity=0.096  Sum_probs=111.7

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ..-.++++.|+|+.+.++..||.|..|+..  .......                    .....+...++++++ +++++
T Consensus        59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~--------------------~~~~~~~v~~v~~s~-d~~~l  117 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT--------------------IPVFSGPVKDISWDS-ESKRI  117 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE--------------------EECSSSCEEEEEECT-TSCEE
T ss_pred             CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccc--------------------cccccCccccccccc-ccccc
Confidence            355788899999988999999999999865  1111000                    011134567899998 55544


Q ss_pred             -EEECCC-C-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCE-EEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          147 -IADAYF-G-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       147 -V~d~~~-g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~l-y~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                       ++.... . +..++.++++....   ..+ ....++.+++.++|.. .++.+.                 ++.+..||.
T Consensus       118 ~~~~~~~~~~~~v~~~~~~~~~~~---l~~-h~~~v~~v~~~~~~~~~l~sgs~-----------------d~~i~i~d~  176 (311)
T d1nr0a1         118 AAVGEGRERFGHVFLFDTGTSNGN---LTG-QARAMNSVDFKPSRPFRIISGSD-----------------DNTVAIFEG  176 (311)
T ss_dssp             EEEECCSSCSEEEEETTTCCBCBC---CCC-CSSCEEEEEECSSSSCEEEEEET-----------------TSCEEEEET
T ss_pred             cccccccccccccccccccccccc---ccc-cccccccccccccceeeeccccc-----------------ccccccccc
Confidence             443222 2 55566665543211   111 1134678889998864 444322                 578899999


Q ss_pred             CCCeEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc----cCC---CCCceEeCCCCCEE
Q 016318          223 TTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI----LPG---YPDNVRTNEKGEFW  294 (391)
Q Consensus       223 ~~~~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~----~~g---~p~~i~~d~~G~lw  294 (391)
                      ++++....... -...+.++++|+++.++.+ ...+.|..++.....  ....+..    ..+   ....++++++|++.
T Consensus       177 ~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~-~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l  253 (311)
T d1nr0a1         177 PPFKFKSTFGEHTKFVHSVRYNPDGSLFAST-GGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI  253 (311)
T ss_dssp             TTBEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred             cccccccccccccccccccccCccccccccc-ccccccccccccccc--ccccccccccccccccccccccccCCCCCEE
Confidence            88776655544 3455799999999966655 445677777754321  1112211    112   23457888888866


Q ss_pred             EEEcC
Q 016318          295 VAIHC  299 (391)
Q Consensus       295 va~~~  299 (391)
                      ++...
T Consensus       254 ~tgs~  258 (311)
T d1nr0a1         254 ASASA  258 (311)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            65443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.68  E-value=1.8e-06  Score=81.19  Aligned_cols=228  Identities=15%  Similarity=0.079  Sum_probs=130.5

Q ss_pred             chhccccceeccccccCcceEEEc--cCCCeeEEEe-cCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCcc
Q 016318           54 KNLLQNSEIKFLNQIQGPESMAFD--PLGRGPYTGV-ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHIC  130 (391)
Q Consensus        54 ~~~l~~~~~~~~~~~~gPe~i~~d--~~G~~ly~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (391)
                      +..|........+..+.|.-...+  +||+.+|+.. .+.+|-+++.+..+.....                   ..+.+
T Consensus        55 ~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii-------------------~iP~g  115 (441)
T d1qnia2          55 KEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKIT-------------------HIPNV  115 (441)
T ss_dssp             HHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE-------------------ECTTC
T ss_pred             ceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEE-------------------ecCCC
Confidence            334443333445667778776654  7899887765 6789999998833322111                   01125


Q ss_pred             CccceEEEecCCCcEEEEECCCC-e------------------EEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-E
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFG-L------------------MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-V  190 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~g-l------------------~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-l  190 (391)
                      ..|+|+++++++..+||+..... +                  ..+|+.+.++..-. ...    ..|.+++++++|. +
T Consensus       116 ~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI-~v~----~~p~~v~~spdGk~a  190 (441)
T d1qnia2         116 QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV-IVD----GNLDNTDADYTGKYA  190 (441)
T ss_dssp             CCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE-EES----SCCCCEEECSSSSEE
T ss_pred             CCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE-ecC----CCccceEECCCCCEE
Confidence            66999999985666888764322 2                  34566554332111 111    2588999999995 7


Q ss_pred             EEEeCCCccc-------c--hhhee--------e------ecccCCCceEEEEeC-CCCeEEEeccCCCCcceEEEccCC
Q 016318          191 YFTDSSTNYQ-------R--RNFMQ--------L------VFSAEDTGRVLKYDP-TTKQTTVLLRNLQFPNGLSLSKDK  246 (391)
Q Consensus       191 y~td~~~~~~-------~--~~~~~--------~------~~~~~~~g~l~~~d~-~~~~~~~~~~~~~~~ngia~~~d~  246 (391)
                      |++...+.-.       .  .+++.        .      ......+ ++..++. .+.+..........|.|++++|||
T Consensus       191 ~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~-~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDG  269 (441)
T d1qnia2         191 TSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS-KVPVVDGRGESEFTRYIPVPKNPHGLNTSPDG  269 (441)
T ss_dssp             EEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC-CCCEEECSSSCSSEEEECCBSSCCCEEECTTS
T ss_pred             EEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCC-CcEEEEcccCCceEEEEeCCCCccCceECCCC
Confidence            7775332110       0  00000        0      0011112 3334443 333333334445679999999999


Q ss_pred             CEEEEEeCCCCeEEEEEeccc------cCccce-eeccc-CC-CCCceEeCCCCCEEEEEcCCCchhhh
Q 016318          247 SFFVFCEGSVGRLHKYWLIGE------KAGNLE-AFAIL-PG-YPDNVRTNEKGEFWVAIHCRRSLYSH  306 (391)
Q Consensus       247 ~~l~v~et~~~~I~~~~~~g~------~~g~~~-~~~~~-~g-~p~~i~~d~~G~lwva~~~~~~~~~~  306 (391)
                      +++|++....+.|..++++--      +..... +..+. .| .|-.-.+|++|+.|.++.....+..|
T Consensus       270 kyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw  338 (441)
T d1qnia2         270 KYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKW  338 (441)
T ss_dssp             CEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred             CEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEe
Confidence            999999888899999997521      111111 11111 11 24456889999999998766555443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.65  E-value=3.6e-06  Score=79.83  Aligned_cols=180  Identities=13%  Similarity=0.184  Sum_probs=102.5

Q ss_pred             ccceeccccccCcceEEEccCCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccce
Q 016318           59 NSEIKFLNQIQGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLG  135 (391)
Q Consensus        59 ~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~g  135 (391)
                      +++.+.++ +..|.+|++.+||+ +|++.. .|+|++++.+  ..+.+........              .....+--+|
T Consensus        18 ~~~~ia~~-L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~~~--------------~~~ge~GLLg   81 (450)
T d1crua_          18 DKKVILSN-LNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVN--------------DADGQNGLLG   81 (450)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCC--------------CTTSSCSEEE
T ss_pred             EEEEEECC-CCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCcccc--------------ccCCCCceee
Confidence            34555444 88999999999999 777775 6999999865  4444443321100              0011233579


Q ss_pred             EEEecC---CCcEEEEECC-----------CC--eEEEeC--CCCee---EEceeccCCCcccCCcceeecCCCCEEEEe
Q 016318          136 LRFDKK---TGDLYIADAY-----------FG--LMKVGP--EGGLA---TSLATEAEGVPLRFTNDLDIDDEGNVYFTD  194 (391)
Q Consensus       136 i~~d~~---~g~L~V~d~~-----------~g--l~~~d~--~~g~~---~~~~~~~~~~~~~~~~~l~~d~~G~ly~td  194 (391)
                      |+++++   ++.+|++-..           +.  +.++..  .....   +.+...........-..|++++||+||++.
T Consensus        82 ia~~Pdf~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~  161 (450)
T d1crua_          82 FAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI  161 (450)
T ss_dssp             EEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred             EEeCCCCccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEe
Confidence            999873   4678886321           01  223322  22221   112111111222345679999999999996


Q ss_pred             CCCcccch--hheee-------------ecccCCCceEEEEeCCCCe-----------EEEeccCCCCcceEEEccCCCE
Q 016318          195 SSTNYQRR--NFMQL-------------VFSAEDTGRVLKYDPTTKQ-----------TTVLLRNLQFPNGLSLSKDKSF  248 (391)
Q Consensus       195 ~~~~~~~~--~~~~~-------------~~~~~~~g~l~~~d~~~~~-----------~~~~~~~~~~~ngia~~~d~~~  248 (391)
                      ........  .....             .-.....|.|+|++++...           .+++..++..|.+++++|+++ 
T Consensus       162 Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-  240 (450)
T d1crua_         162 GDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-  240 (450)
T ss_dssp             CCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-
T ss_pred             cCCCcccccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-
Confidence            33211000  00000             0001224889999876542           245677888899999999887 


Q ss_pred             EEEEeCC
Q 016318          249 FVFCEGS  255 (391)
Q Consensus       249 l~v~et~  255 (391)
                      ||++|..
T Consensus       241 l~~~e~G  247 (450)
T d1crua_         241 LLQSEQG  247 (450)
T ss_dssp             EEEEEEC
T ss_pred             eeecccc
Confidence            8988764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.5e-05  Score=71.58  Aligned_cols=188  Identities=13%  Similarity=0.060  Sum_probs=113.2

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCc---eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-E
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLK---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-L  145 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L  145 (391)
                      .-.+++++++|+.++++. +|.|..|+...   ...+...                  ......+...++++++ +++ |
T Consensus        53 ~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~------------------~~~~h~~~I~~v~~s~-dg~~l  112 (337)
T d1gxra_          53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL------------------DCLNRDNYIRSCKLLP-DGCTL  112 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE------------------ECSCTTSBEEEEEECT-TSSEE
T ss_pred             cEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEe------------------eecCCCCcEEEEEEcC-CCCEE
Confidence            557899999999888876 78888887541   1111000                  0111124467899998 555 4


Q ss_pred             EEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       146 ~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      .++...+.|..+|......+..... .+ .......+++.+++.+.++.+.                 ++.+..++..++
T Consensus       113 ~s~~~dg~i~iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~s~~~-----------------d~~i~~~~~~~~  173 (337)
T d1gxra_         113 IVGGEASTLSIWDLAAPTPRIKAEL-TS-SAPACYALAISPDSKVCFSCCS-----------------DGNIAVWDLHNQ  173 (337)
T ss_dssp             EEEESSSEEEEEECCCC--EEEEEE-EC-SSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTT
T ss_pred             EEeeccccccccccccccccccccc-cc-cccccccccccccccccccccc-----------------cccccccccccc
Confidence            4454444477778664432222111 11 0123466778888887776533                 467889998888


Q ss_pred             eEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318          226 QTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       226 ~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      +....... ....+.++++++++.++++ +..+.|..+++...+  ....+ ..++....++++++|++.++....
T Consensus       174 ~~~~~~~~~~~~v~~l~~s~~~~~~~~~-~~d~~v~i~d~~~~~--~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d  245 (337)
T d1gxra_         174 TLVRQFQGHTDGASCIDISNDGTKLWTG-GLDNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccce--eeccc-ccccceEEEEEcccccccceeccc
Confidence            76555443 3456789999999977766 456788888765321  11111 234445678889999866654443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.60  E-value=8.2e-07  Score=83.91  Aligned_cols=178  Identities=11%  Similarity=-0.038  Sum_probs=112.0

Q ss_pred             EEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEEeCCCCe
Q 016318           84 YTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGL  163 (391)
Q Consensus        84 y~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~  163 (391)
                      .+...+|.|..||....+......                     ....|++++|++++..||+++....+..+|..+++
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~~~~---------------------~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKTVLD---------------------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEE---------------------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEe---------------------CCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence            345556889999887333332221                     13469999999965568888766669999988765


Q ss_pred             eEEceeccCC-CcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC--------
Q 016318          164 ATSLATEAEG-VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN--------  233 (391)
Q Consensus       164 ~~~~~~~~~~-~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--------  233 (391)
                      .+.......+ .+.......++++||+ +|++...                 .+.+..||.++++.......        
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~-----------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~  157 (432)
T d1qksa2          95 PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQ  157 (432)
T ss_dssp             CCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred             ceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCC-----------------CCeEEEEeCccccceeeeccCCccccce
Confidence            4332221111 1112223334567896 6777633                 46888999988876544311        


Q ss_pred             ----CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEcCC
Q 016318          234 ----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCR  300 (391)
Q Consensus       234 ----~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~  300 (391)
                          .....+|++++|+..++++....+.|+.++....+......+ .....|.+++++++|+ ++++....
T Consensus       158 ~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~  228 (432)
T d1qksa2         158 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANAR  228 (432)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred             eccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEE-cccCccccceECCCCCEEEEecccc
Confidence                123456889999998999988889999998654322111111 1224678899999998 56665443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=9.3e-06  Score=72.25  Aligned_cols=162  Identities=13%  Similarity=0.001  Sum_probs=95.9

Q ss_pred             EEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC
Q 016318           74 MAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG  153 (391)
Q Consensus        74 i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g  153 (391)
                      ++++++|+.+++++.++.|..||.+.-+.+....                  . +....|.++++++++..+||++...+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~------------------~-~~~~~p~~l~~spDG~~l~v~~~~~~   62 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV------------------M-PDKFGPGTAMMAPDNRTAYVLNNHYG   62 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE------------------C-SSCCSSCEEEECTTSSEEEEEETTTT
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEE------------------c-CCCCCcceEEECCCCCEEEEEECCCC
Confidence            4678899989999999999999998333332110                  0 11356899999995456899987755


Q ss_pred             -eEEEeCCCCeeEEceec--cCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          154 -LMKVGPEGGLATSLATE--AEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       154 -l~~~d~~~g~~~~~~~~--~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                       |..+|.++++.......  ........|.++++++||+ +|++........      .........+..++..+++...
T Consensus        63 ~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~  136 (346)
T d1jmxb_          63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN------DHYVVKPPRLEVFSTADGLEAK  136 (346)
T ss_dssp             EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECS------SCEEECCCEEEEEEGGGGGGBC
T ss_pred             cEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCccee------eeeccCcceEEEEecccceeee
Confidence             99999998865432221  1112234688999999995 777753211000      0011224566777766654322


Q ss_pred             ecc---CCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318          230 LLR---NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  264 (391)
Q Consensus       230 ~~~---~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~  264 (391)
                      ...   .......+..+++++ ++++.   ..+..++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~  170 (346)
T d1jmxb_         137 PVRTFPMPRQVYLMRAADDGS-LYVAG---PDIYKMDV  170 (346)
T ss_dssp             CSEEEECCSSCCCEEECTTSC-EEEES---SSEEEECT
T ss_pred             EEEeeeccCceEEEEecCCCE-EEEeC---CcceEEEc
Confidence            111   112334456666666 66653   34555543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.52  E-value=9.4e-07  Score=79.05  Aligned_cols=140  Identities=11%  Similarity=0.044  Sum_probs=86.2

Q ss_pred             EEEecCCCcE-EEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCC
Q 016318          136 LRFDKKTGDL-YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       136 i~~d~~~g~L-~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      +++++ +++. ++++..+.|..+|.+++++..-.....   ...|.++++++||+ +|++...                 
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~---~~~p~~l~~spDG~~l~v~~~~-----------------   60 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNH-----------------   60 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETT-----------------
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCC---CCCcceEEECCCCCEEEEEECC-----------------
Confidence            45666 5554 445555669999999986543222111   13588999999996 6787743                 


Q ss_pred             CceEEEEeCCCCeEEEeccC-------CCCcceEEEccCCCEEEEEeCC-----------CCeEEEEEeccccC-cccee
Q 016318          214 TGRVLKYDPTTKQTTVLLRN-------LQFPNGLSLSKDKSFFVFCEGS-----------VGRLHKYWLIGEKA-GNLEA  274 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~~~-------~~~~ngia~~~d~~~l~v~et~-----------~~~I~~~~~~g~~~-g~~~~  274 (391)
                      ++.|..||..+++.......       ...|.+++++|||+++|++...           ...+..++....+. .....
T Consensus        61 ~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  140 (346)
T d1jmxb_          61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT  140 (346)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred             CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe
Confidence            47899999998876543221       1357899999999999998532           34555555432111 11111


Q ss_pred             ecccCCCCCceEeCCCCCEEEEE
Q 016318          275 FAILPGYPDNVRTNEKGEFWVAI  297 (391)
Q Consensus       275 ~~~~~g~p~~i~~d~~G~lwva~  297 (391)
                       ...+.....+....++.++++.
T Consensus       141 -~~~~~~~~~~~~~~~~~~~~~~  162 (346)
T d1jmxb_         141 -FPMPRQVYLMRAADDGSLYVAG  162 (346)
T ss_dssp             -EECCSSCCCEEECTTSCEEEES
T ss_pred             -eeccCceEEEEecCCCEEEEeC
Confidence             1123334456666777777753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.51  E-value=2.7e-05  Score=71.00  Aligned_cols=195  Identities=7%  Similarity=-0.008  Sum_probs=110.3

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE-E
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI-A  148 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V-~  148 (391)
                      .+++++++|+.+.+++.+|.|..|+..  ++..+....                    ...+....++|++ ++++++ +
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~--------------------gH~~~V~~l~fsp-~~~~l~s~   69 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--------------------EHNGQVTGVDWAP-DSNRIVTC   69 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--------------------CCSSCEEEEEEET-TTTEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec--------------------CCCCCEEEEEECC-CCCEEEEE
Confidence            588999999988889999998888754  333332211                    0124457899998 566544 4


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      ....-|..+|.+++..+...... + ....+..++++++|+..++.+.               .+.-+++.++.......
T Consensus        70 s~D~~i~vWd~~~~~~~~~~~~~-~-~~~~v~~i~~~p~~~~l~~~s~---------------d~~i~i~~~~~~~~~~~  132 (371)
T d1k8kc_          70 GTDRNAYVWTLKGRTWKPTLVIL-R-INRAARCVRWAPNEKKFAVGSG---------------SRVISICYFEQENDWWV  132 (371)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECC-C-CSSCEEEEEECTTSSEEEEEET---------------TSSEEEEEEETTTTEEE
T ss_pred             ECCCeEEEEeecccccccccccc-c-ccccccccccccccccceeecc---------------cCcceeeeeeccccccc
Confidence            44445777787776544332211 1 1234678889999986666533               11224555555444322


Q ss_pred             E--eccCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcc-------------ceeecc---cCCCCCceEeCC
Q 016318          229 V--LLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN-------------LEAFAI---LPGYPDNVRTNE  289 (391)
Q Consensus       229 ~--~~~~~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~-------------~~~~~~---~~g~p~~i~~d~  289 (391)
                      .  ..... .....++++||++++..+ +..+.|..++........             .+....   ..+....+++++
T Consensus       133 ~~~~~~~~~~~v~~v~~~p~~~~l~s~-s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  211 (371)
T d1k8kc_         133 CKHIKKPIRSTVLSLDWHPNSVLLAAG-SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA  211 (371)
T ss_dssp             EEEECTTCCSCEEEEEECTTSSEEEEE-ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred             ccccccccccccccccccccccceecc-ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec
Confidence            2  12222 234678999999966544 556677777654321110             011111   112235678899


Q ss_pred             CCCEEEEEcCCCchhh
Q 016318          290 KGEFWVAIHCRRSLYS  305 (391)
Q Consensus       290 ~G~lwva~~~~~~~~~  305 (391)
                      +|+..++......+..
T Consensus       212 ~g~~l~s~~~d~~i~i  227 (371)
T d1k8kc_         212 NGSRVAWVSHDSTVCL  227 (371)
T ss_dssp             SSSEEEEEETTTEEEE
T ss_pred             ccccccccccCCcceE
Confidence            9986655444444433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.50  E-value=8.1e-06  Score=72.35  Aligned_cols=145  Identities=12%  Similarity=-0.018  Sum_probs=86.2

Q ss_pred             ccCcceEEEccCCCeeEE-EecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           68 IQGPESMAFDPLGRGPYT-GVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        68 ~~gPe~i~~d~~G~~ly~-~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      ...|.++++++||+.+|+ +..++.|..||....+........               ........+.+++++++++.+|
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~---------------~~~~~~~~~~~v~~s~dg~~l~   97 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS---------------TPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC---------------BTTEEEECTTCEEECTTSSEEE
T ss_pred             CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC---------------CCcccccceeeEEEcCCCcEEE
Confidence            357899999999997775 467899999998733322221100               0111234578899998656677


Q ss_pred             EEECC------------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCC
Q 016318          147 IADAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       147 V~d~~------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      ++...            ..+..+|..+++.......     ...+.+++++++|. +|+++                   
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~-------------------  153 (337)
T d1pbyb_          98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----PRQITMLAWARDGSKLYGLG-------------------  153 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----CSSCCCEEECTTSSCEEEES-------------------
T ss_pred             EeecCCcceeeeccccccceeeccccCCeEEEeccc-----cCCceEEEEcCCCCEEEEEc-------------------
Confidence            77531            2255667776654432221     23578899999996 54443                   


Q ss_pred             CceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEE
Q 016318          214 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFC  252 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~  252 (391)
                       +....+|..+++..........+....+++++..++..
T Consensus       154 -~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (337)
T d1pbyb_         154 -RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             -SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             -CCcceeeeecCcEEEEeecCCccccceecCCcceeecc
Confidence             24566788877765544333333334444454434433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.49  E-value=3.8e-06  Score=79.13  Aligned_cols=160  Identities=12%  Similarity=0.038  Sum_probs=105.1

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEe----cCC
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD----KKT  142 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d----~~~  142 (391)
                      ..|.+++++|||+.+|+++.+|.|..|+..  +.......                     ..+..|.++.++    +++
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i---------------------~~~~~~~~~~~s~~~SpDG  120 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI---------------------KIGSEARSIETSKMEGWED  120 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE---------------------ECCSEEEEEEECCSTTCTT
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEE---------------------ecCCCCCCeEEecccCCCC
Confidence            479999999999999999999999999865  21111111                     113446666654    433


Q ss_pred             CcEEEEECCC-CeEEEeCCCCeeEEceec----cCC---CcccCCcceeecCCCCEE-EEeCCCcccchhheeeecccCC
Q 016318          143 GDLYIADAYF-GLMKVGPEGGLATSLATE----AEG---VPLRFTNDLDIDDEGNVY-FTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       143 g~L~V~d~~~-gl~~~d~~~g~~~~~~~~----~~~---~~~~~~~~l~~d~~G~ly-~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      ..||++.... .+..+|..+++.......    ...   .+......++.+++|..+ ++..                 .
T Consensus       121 ~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~-----------------~  183 (432)
T d1qksa2         121 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-----------------E  183 (432)
T ss_dssp             TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET-----------------T
T ss_pred             CEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc-----------------c
Confidence            4578877654 488899988875543221    110   011234456778888644 4432                 2


Q ss_pred             CceEEEEeCCCCeEEEec--cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          214 TGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~~~~--~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ++.+..+|..+.+...+.  .....|.+++++|||++++++....+.+..++.+.
T Consensus       184 ~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence            578889988776543322  33457899999999999999987777888877553

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.47  E-value=5.9e-05  Score=66.50  Aligned_cols=214  Identities=11%  Similarity=0.028  Sum_probs=107.6

Q ss_pred             cccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (391)
Q Consensus        65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~  144 (391)
                      .|--..-.+++++++|+.+.+++.||.|..|+...........                    ...+....+++++ +++
T Consensus        52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~--------------------~~~~~v~~v~~~~-~~~  110 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP--------------------LRSSWVMTCAYAP-SGN  110 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE--------------------CSCSCEEEEEECT-TSS
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe--------------------cccccEEeeEeec-cce
Confidence            4433455689999999999999999999999877322222111                    0124456888988 555


Q ss_pred             E-EEEECCCCeEEEeCCCCeeEEc-eeccCCCcc-------cCCcce-eecCCCCEEEEeCCCccc--------------
Q 016318          145 L-YIADAYFGLMKVGPEGGLATSL-ATEAEGVPL-------RFTNDL-DIDDEGNVYFTDSSTNYQ--------------  200 (391)
Q Consensus       145 L-~V~d~~~gl~~~d~~~g~~~~~-~~~~~~~~~-------~~~~~l-~~d~~G~ly~td~~~~~~--------------  200 (391)
                      + +.+....-+...+......... .....+...       .....+ ....++............              
T Consensus       111 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (340)
T d1tbga_         111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL  190 (340)
T ss_dssp             EEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             eeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeee
Confidence            4 4444444455555433211000 000000000       000000 001111111111000000              


Q ss_pred             -chhheeeecccCCCceEEEEeCCCCeEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-
Q 016318          201 -RRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-  277 (391)
Q Consensus       201 -~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-  277 (391)
                       .......++.+..++.+..||..+++....... -...+.++++|+++.++.+ +..+.|..+++...  .....+.. 
T Consensus       191 ~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~-s~d~~i~~~~~~~~--~~~~~~~~~  267 (340)
T d1tbga_         191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG-SDDATCRLFDLRAD--QELMTYSHD  267 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTT--EEEEEECCT
T ss_pred             ccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeeccc--ccccccccc
Confidence             000011123344567888999888776544333 3456789999999966655 45667877776532  11122211 


Q ss_pred             -cCCCCCceEeCCCCCEEEEEcCCCc
Q 016318          278 -LPGYPDNVRTNEKGEFWVAIHCRRS  302 (391)
Q Consensus       278 -~~g~p~~i~~d~~G~lwva~~~~~~  302 (391)
                       .......++++++|++.++......
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~dg~  293 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYDDFN  293 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEETTSC
T ss_pred             cccCceEEEEECCCCCEEEEEECCCE
Confidence             1122356788999987766554433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.45  E-value=2.8e-05  Score=72.49  Aligned_cols=190  Identities=9%  Similarity=-0.071  Sum_probs=112.7

Q ss_pred             CcceEEEccCCC-ee-EEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           70 GPESMAFDPLGR-GP-YTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        70 gPe~i~~d~~G~-~l-y~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      .|..+.++.+.+ .+ .+...+|.|..||....+.+....                     ....|.+++|++++..||+
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~---------------------~g~~~~~vafSPDGk~l~~   78 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID---------------------TGYAVHISRMSASGRYLLV   78 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEE---------------------CCSSEEEEEECTTSCEEEE
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEe---------------------CCCCeeEEEECCCCCEEEE
Confidence            444444544422 23 345567999999987333332221                     1346899999996556888


Q ss_pred             EECCCCeEEEeCCCCeeEEceeccCC-CcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          148 ADAYFGLMKVGPEGGLATSLATEAEG-VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       148 ~d~~~gl~~~d~~~g~~~~~~~~~~~-~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      ++....+..+|.++++.........+ .+...+.++++.+||+ ++++...                 .+.+..+|.+++
T Consensus        79 ~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~-----------------~~~v~i~d~~~~  141 (426)
T d1hzua2          79 IGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETL  141 (426)
T ss_dssp             EETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTC
T ss_pred             EeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecC-----------------CCeEEEEcCCcc
Confidence            87666699999988865443321111 1112233445567886 5666532                 356778888887


Q ss_pred             eEEEeccC------------CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCE
Q 016318          226 QTTVLLRN------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEF  293 (391)
Q Consensus       226 ~~~~~~~~------------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~l  293 (391)
                      +.......            ......++.++|+..++++....+.+..+............ ......|.++.++++|++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~  220 (426)
T d1hzua2         142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS-IGAAPFLADGGWDSSHRY  220 (426)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEE-EECCSSEEEEEECTTSCE
T ss_pred             ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEE-eccCCccEeeeECCCCcE
Confidence            66544321            11234577888888888888877888777644322111111 112235778999999996


Q ss_pred             EEEEc
Q 016318          294 WVAIH  298 (391)
Q Consensus       294 wva~~  298 (391)
                      +....
T Consensus       221 ~~~a~  225 (426)
T d1hzua2         221 FMTAA  225 (426)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            55443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.45  E-value=4.7e-06  Score=74.82  Aligned_cols=172  Identities=16%  Similarity=0.107  Sum_probs=106.6

Q ss_pred             Ecc-CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC-
Q 016318           76 FDP-LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-  153 (391)
Q Consensus        76 ~d~-~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-  153 (391)
                      |.| ||+ +++...+|+|+.++...-.... .                     ...++..+++|+++++.|+++....| 
T Consensus        10 fSP~dG~-~~a~~~~g~v~v~d~~~~~~~~-~---------------------~~~~~v~~~~~spDg~~l~~~~~~~g~   66 (360)
T d1k32a3          10 FSPLDGD-LIAFVSRGQAFIQDVSGTYVLK-V---------------------PEPLRIRYVRRGGDTKVAFIHGTREGD   66 (360)
T ss_dssp             EEECGGG-CEEEEETTEEEEECTTSSBEEE-C---------------------SCCSCEEEEEECSSSEEEEEEEETTEE
T ss_pred             ccCCCCC-EEEEEECCeEEEEECCCCcEEE-c---------------------cCCCCEEEEEECCCCCEEEEEEcCCCC
Confidence            677 898 5666677899999776211111 1                     11356788999994434555544444 


Q ss_pred             -eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc
Q 016318          154 -LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR  232 (391)
Q Consensus       154 -l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  232 (391)
                       |+.+|.++++.+.+...     ...+..++++++|+..++...                 .+.++.++..+++......
T Consensus        67 ~v~v~d~~~~~~~~~~~~-----~~~v~~~~~spdg~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~  124 (360)
T d1k32a3          67 FLGIYDYRTGKAEKFEEN-----LGNVFAMGVDRNGKFAVVAND-----------------RFEIMTVDLETGKPTVIER  124 (360)
T ss_dssp             EEEEEETTTCCEEECCCC-----CCSEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCCcEEEeeCC-----CceEEeeeecccccccceecc-----------------ccccccccccccceeeeee
Confidence             78889999887765432     124678899999986666533                 4678899998887765543


Q ss_pred             C-CCCcceEEEccCCCEEEEEeCC---------CCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEE
Q 016318          233 N-LQFPNGLSLSKDKSFFVFCEGS---------VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWV  295 (391)
Q Consensus       233 ~-~~~~ngia~~~d~~~l~v~et~---------~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwv  295 (391)
                      . ......++++|||++|.++...         ...++.+++.+   ++........+....++.+++|+..+
T Consensus       125 ~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~---~~~~~~~~~~~~~~~~~~spdg~~l~  194 (360)
T d1k32a3         125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG---RKIFAATTENSHDYAPAFDADSKNLY  194 (360)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT---TEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred             cccccccchhhccceeeeeeeccccccceeeccccceeeecccc---CceeeecccccccccccccCCCCEEE
Confidence            3 3456789999999987765321         12355565443   22222212122233466777887443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.44  E-value=2.8e-05  Score=69.33  Aligned_cols=195  Identities=10%  Similarity=-0.020  Sum_probs=110.5

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE-E
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI-A  148 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V-~  148 (391)
                      -|..++.+++|+.++.+. ++.|+.++.+.........                    ...+....+++++ +|++++ +
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~--------------------~H~~~v~~~~~sp-~g~~latg   76 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT--------------------EHSHQTTVAKTSP-SGYYCASG   76 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC--------------------CCSSCEEEEEECT-TSSEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEc--------------------CCCCCEEEEEEeC-CCCeEecc
Confidence            355788999999766664 5678888765111110010                    0124567889998 666555 4


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      +..+.|..+|..++....... ..+. -..+..+++.++|+++++.+..               ....+..++.++++..
T Consensus        77 ~~dg~i~iwd~~~~~~~~~~~-~~~~-~~~v~~v~~s~d~~~l~~~~~~---------------~~~~~~v~~~~~~~~~  139 (311)
T d1nr0a1          77 DVHGNVRIWDTTQTTHILKTT-IPVF-SGPVKDISWDSESKRIAAVGEG---------------RERFGHVFLFDTGTSN  139 (311)
T ss_dssp             ETTSEEEEEESSSTTCCEEEE-EECS-SSCEEEEEECTTSCEEEEEECC---------------SSCSEEEEETTTCCBC
T ss_pred             ccCceEeeeeeeccccccccc-cccc-cCcccccccccccccccccccc---------------cccccccccccccccc
Confidence            444447788877654221111 1110 1246788999999877765321               1223445565555432


Q ss_pred             E-eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCchhh
Q 016318          229 V-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYS  305 (391)
Q Consensus       229 ~-~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~  305 (391)
                      . +.......+.++++|++++++++-+..+.|..+++...+  ....+.........+..+++|+++++......+.+
T Consensus       140 ~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~--~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~  215 (311)
T d1nr0a1         140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL  215 (311)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ccccccccccccccccccceeeecccccccccccccccccc--cccccccccccccccccCccccccccccccccccc
Confidence            2 222233567899999998777766666778888765321  11111112233457889999997776554444433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.40  E-value=3.9e-05  Score=71.49  Aligned_cols=160  Identities=11%  Similarity=0.002  Sum_probs=98.2

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEe----cCC
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD----KKT  142 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d----~~~  142 (391)
                      ..|++++++|||+.+|++..++.|..|+.+  +.......                     ..+..|.++.++    +++
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i---------------------~~~~~~~~~~~s~~~spDG  120 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI---------------------KIGIEARSVESSKFKGYED  120 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE---------------------ECCSEEEEEEECCSTTCTT
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE---------------------eCCCCCcceEEeeeecCCC
Confidence            479999999999999999999999999876  22111111                     012335555554    444


Q ss_pred             CcEEEEECCCC-eEEEeCCCCeeEEceecc----CCC---cccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCC
Q 016318          143 GDLYIADAYFG-LMKVGPEGGLATSLATEA----EGV---PLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAED  213 (391)
Q Consensus       143 g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~----~~~---~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~  213 (391)
                      ..|+++....+ +..+|..++.........    ...   .......++..+++. +|++..                 .
T Consensus       121 ~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~-----------------~  183 (426)
T d1hzua2         121 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------------E  183 (426)
T ss_dssp             TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------------T
T ss_pred             CEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC-----------------C
Confidence            45788876544 777888887655433211    100   011223345555664 333332                 2


Q ss_pred             CceEEEEeCCCCeEE--EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          214 TGRVLKYDPTTKQTT--VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       214 ~g~l~~~d~~~~~~~--~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ++.+..++..+....  ........+.+++++|++++++++....+.+..++...
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~  238 (426)
T d1hzua2         184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD  238 (426)
T ss_dssp             TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred             CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence            456665555443321  12234467899999999999999988888888887553

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.32  E-value=2.9e-05  Score=70.79  Aligned_cols=187  Identities=10%  Similarity=-0.006  Sum_probs=104.3

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V  147 (391)
                      .-.+|+++++|+.+.+++.|+.|..|+..  .+......                    ......+.++.+++++..|++
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~--------------------~~~~~~v~~i~~~p~~~~l~~  112 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI--------------------LRINRAARCVRWAPNEKKFAV  112 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC--------------------CCCSSCEEEEEECTTSSEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccc--------------------cccccccccccccccccccee
Confidence            34789999999988999999999988764  22221111                    011234678899984334555


Q ss_pred             EECCCCeEE--EeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          148 ADAYFGLMK--VGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       148 ~d~~~gl~~--~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      +....-+..  ++....... ......+ .-.....++++++|++.++.+.                 ++.+..|+...+
T Consensus       113 ~s~d~~i~i~~~~~~~~~~~-~~~~~~~-~~~~v~~v~~~p~~~~l~s~s~-----------------D~~v~v~~~~~~  173 (371)
T d1k8kc_         113 GSGSRVISICYFEQENDWWV-CKHIKKP-IRSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIK  173 (371)
T ss_dssp             EETTSSEEEEEEETTTTEEE-EEEECTT-CCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCT
T ss_pred             ecccCcceeeeeeccccccc-ccccccc-cccccccccccccccceecccc-----------------CcEEEEEeeccC
Confidence            554443444  443333211 1111111 1124567888999987776533                 355666665432


Q ss_pred             eE-------------------EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceE
Q 016318          226 QT-------------------TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVR  286 (391)
Q Consensus       226 ~~-------------------~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~  286 (391)
                      ..                   ..........++++++|+++.++.+ +..+.|..+++....  ....+.........++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~-~~d~~i~iwd~~~~~--~~~~~~~~~~~v~s~~  250 (371)
T d1k8kc_         174 EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV-SHDSTVCLADADKKM--AVATLASETLPLLAVT  250 (371)
T ss_dssp             TTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE-ETTTEEEEEEGGGTT--EEEEEECSSCCEEEEE
T ss_pred             ccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccc-ccCCcceEEeeeccc--ceeeeecccccceeee
Confidence            21                   1111122245789999999977655 456788888765421  1112211111225677


Q ss_pred             eCCCCCEEEEEc
Q 016318          287 TNEKGEFWVAIH  298 (391)
Q Consensus       287 ~d~~G~lwva~~  298 (391)
                      +.++|.+.++..
T Consensus       251 fs~d~~~la~g~  262 (371)
T d1k8kc_         251 FITESSLVAAGH  262 (371)
T ss_dssp             EEETTEEEEEET
T ss_pred             ecCCCCEEEEEc
Confidence            888887766543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.31  E-value=3.7e-05  Score=68.69  Aligned_cols=136  Identities=13%  Similarity=0.031  Sum_probs=93.0

Q ss_pred             EEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEE-EEeCCCcccchhheeeecccCCC
Q 016318          136 LRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVY-FTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       136 i~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly-~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ..|+|.+|++++......|+.+|.+++.+..+. +     .....++++.+||+.. ++...                ..
T Consensus         8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~-~-----~~~v~~~~~spDg~~l~~~~~~----------------~g   65 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP-E-----PLRIRYVRRGGDTKVAFIHGTR----------------EG   65 (360)
T ss_dssp             EEEEECGGGCEEEEETTEEEEECTTSSBEEECS-C-----CSCEEEEEECSSSEEEEEEEET----------------TE
T ss_pred             ccccCCCCCEEEEEECCeEEEEECCCCcEEEcc-C-----CCCEEEEEECCCCCEEEEEEcC----------------CC
Confidence            357764577766655556999999988776652 1     1246789999999644 43321                11


Q ss_pred             ceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEE
Q 016318          215 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW  294 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lw  294 (391)
                      ..++.||.++++.+.+.........++++||++.+..+ ...+.++.++..+.+.  ...+.........++++++|+..
T Consensus        66 ~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l  142 (360)
T d1k32a3          66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA-NDRFEIMTVDLETGKP--TVIERSREAMITDFTISDNSRFI  142 (360)
T ss_dssp             EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCE--EEEEECSSSCCCCEEECTTSCEE
T ss_pred             CEEEEEECCCCcEEEeeCCCceEEeeeeccccccccee-ccccccccccccccce--eeeeecccccccchhhccceeee
Confidence            35788999999998887777778899999999977666 5567888888765321  22222233455679999999855


Q ss_pred             EE
Q 016318          295 VA  296 (391)
Q Consensus       295 va  296 (391)
                      +.
T Consensus       143 a~  144 (360)
T d1k32a3         143 AY  144 (360)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=0.00099  Score=59.81  Aligned_cols=205  Identities=13%  Similarity=-0.013  Sum_probs=108.2

Q ss_pred             cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE-EE
Q 016318           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI-AD  149 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V-~d  149 (391)
                      -.+++++++|+.+.+|+ |+.|..|+.................-....  ..............++++++ ++++++ +.
T Consensus        65 V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~  140 (388)
T d1erja_          65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN--LNTSSSPSSDLYIRSVCFSP-DGKFLATGA  140 (388)
T ss_dssp             CCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------CCCCBEEEEEECT-TSSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccc--cccccccCCCCCEEEEEECC-CCCcceecc
Confidence            45889999999777765 888998886622222111110000000000  00000011123356789998 566544 44


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                      ..+-|..++..+++........    ......++..+++...++.+.                 .+.+..+|..+.....
T Consensus       141 ~dg~v~i~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~-----------------~~~i~~~d~~~~~~~~  199 (388)
T d1erja_         141 EDRLIRIWDIENRKIVMILQGH----EQDIYSLDYFPSGDKLVSGSG-----------------DRTVRIWDLRTGQCSL  199 (388)
T ss_dssp             TTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEE
T ss_pred             cccccccccccccccccccccc----ccccccccccccccccccccc-----------------ceeeeeeecccccccc
Confidence            4444788888777544332211    124566777888765555432                 4778889988776655


Q ss_pred             eccCCCCcceEEEcc-CCCEEEEEeCCCCeEEEEEeccccCccceeecc----c---CCCCCceEeCCCCCEEEEEcCCC
Q 016318          230 LLRNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI----L---PGYPDNVRTNEKGEFWVAIHCRR  301 (391)
Q Consensus       230 ~~~~~~~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~----~---~g~p~~i~~d~~G~lwva~~~~~  301 (391)
                      ..........+++.+ +++.++.+ ...+.|..++.....  ....+..    .   .+....+.++++|++.++.....
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~  276 (388)
T d1erja_         200 TLSIEDGVTTVAVSPGDGKYIAAG-SLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  276 (388)
T ss_dssp             EEECSSCEEEEEECSTTCCEEEEE-ETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccCCCCCeEEEE-cCCCeEEEeecccCc--cceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence            544444455555554 67755444 556678888754321  1111110    1   12234578888888666554444


Q ss_pred             ch
Q 016318          302 SL  303 (391)
Q Consensus       302 ~~  303 (391)
                      .+
T Consensus       277 ~i  278 (388)
T d1erja_         277 SV  278 (388)
T ss_dssp             EE
T ss_pred             cE
Confidence            43

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.27  E-value=0.00013  Score=66.10  Aligned_cols=229  Identities=8%  Similarity=-0.106  Sum_probs=124.2

Q ss_pred             eEEEccCCCeeEEEec----------CCEEEEEeCCceeEEEee--cCCCcccCCCCCCccccccccCccCccceEEEec
Q 016318           73 SMAFDPLGRGPYTGVA----------DGRILFWDGLKWTDFAFT--SNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~----------~g~I~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~  140 (391)
                      .+++.+||+.+|+.+.          ++.|..||....+.....  ...               ........|.++++++
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~---------------~~~~~g~~p~~~a~Sp  133 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA---------------PRFSVGPRVHIIGNCA  133 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS---------------CSCCBSCCTTSEEECT
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc---------------ceecccCCccceEECC
Confidence            6899999998888653          466888987732222211  110               1112356789999999


Q ss_pred             CCCcEEEEECCC-CeEEEeCCCCeeEEceeccCCC---cccCCcceeecCCCCEEEEeCCCccc-----------chhhe
Q 016318          141 KTGDLYIADAYF-GLMKVGPEGGLATSLATEAEGV---PLRFTNDLDIDDEGNVYFTDSSTNYQ-----------RRNFM  205 (391)
Q Consensus       141 ~~g~L~V~d~~~-gl~~~d~~~g~~~~~~~~~~~~---~~~~~~~l~~d~~G~ly~td~~~~~~-----------~~~~~  205 (391)
                      ++..|||++... .+..+|..++++..........   +......++..+||.+++.+....-.           ..+..
T Consensus       134 DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (368)
T d1mdah_         134 SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS  213 (368)
T ss_dssp             TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccc
Confidence            666799998764 4999999988765433221110   01122335566778755554221100           00000


Q ss_pred             e--------eecccCCCceEEEEeCCCCeEEEeccCC-------------CCcceEEEccCCCEEEEEeCCC--------
Q 016318          206 Q--------LVFSAEDTGRVLKYDPTTKQTTVLLRNL-------------QFPNGLSLSKDKSFFVFCEGSV--------  256 (391)
Q Consensus       206 ~--------~~~~~~~~g~l~~~d~~~~~~~~~~~~~-------------~~~ngia~~~d~~~l~v~et~~--------  256 (391)
                      .        ...-....++++.++...++...+...-             ..+..++++++++.+|++....        
T Consensus       214 ~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~  293 (368)
T d1mdah_         214 SQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA  293 (368)
T ss_dssp             SCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred             eeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCC
Confidence            0        0000112345666776665554432110             1235689999999898874322        


Q ss_pred             CeEEEEEeccccCccceeecccCCCCCceEeCCCCC--EEEEEcCCCchhhhhhhcCccceeeeeecCc
Q 016318          257 GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE--FWVAIHCRRSLYSHLMALYPKIRHFLLKLPI  323 (391)
Q Consensus       257 ~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~--lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~  323 (391)
                      .+|+.++.+..   +...-....+.|.++++++||+  +|++......+..+    ....++.+..++.
T Consensus       294 ~~v~v~D~~t~---~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~----D~~tgk~~~~i~~  355 (368)
T d1mdah_         294 ENTSSVTASVG---QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIY----DAASDQDQSSVEL  355 (368)
T ss_dssp             EEEEEEESSSC---CEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEE----ESSSCEEEEECCC
T ss_pred             ceEEEEECCCC---cEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEE----ECCCCCEEEEEEC
Confidence            35888875532   1111112234678899999996  56665544332221    2234455555543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.24  E-value=4.5e-05  Score=66.67  Aligned_cols=152  Identities=10%  Similarity=0.046  Sum_probs=96.0

Q ss_pred             cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~  148 (391)
                      ..+.++++.++|+ +.+...++.+..++..+.....                        ....+..+++++++..|.++
T Consensus       100 ~~~~~~~~s~~g~-~~~~~~~~~i~~~~~~~~~~~~------------------------~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2         100 SQPLGLAVSADGD-IAVAACYKHIAIYSHGKLTEVP------------------------ISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             SCEEEEEECTTSS-CEEEEESSEEEEEETTEEEEEE------------------------CSSCEEEEEECTTSCEEEEE
T ss_pred             ccccccccccccc-cccccccccccccccccccccc------------------------cccccccccccccccccccc
Confidence            3567889999998 5555566778888765322221                        02334567888833345555


Q ss_pred             ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      .....|..+|.++++...+.....   ...+..++++++|...++.+.                 ++.+..||..++...
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-----------------d~~i~~~~~~~~~~~  214 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVH---PAEITSVAFSNNGAFLVATDQ-----------------SRKVIPYSVANNFEL  214 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEEC---SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEEGGGTTEE
T ss_pred             cccccccccccccccccccccccc---ccccccccccccccccccccc-----------------ccccccccccccccc
Confidence            555558888887776554322211   124678899999987666533                 478999997766543


Q ss_pred             EeccCC----CCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          229 VLLRNL----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       229 ~~~~~~----~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .....+    ...+.++++|++++++.+ ...+.|..+++..
T Consensus       215 ~~~~~~~~h~~~v~~l~~s~~~~~l~sg-s~dg~i~iwd~~~  255 (299)
T d1nr0a2         215 AHTNSWTFHTAKVACVSWSPDNVRLATG-SLDNSVIVWNMNK  255 (299)
T ss_dssp             SCCCCCCCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTC
T ss_pred             cccccccccccccccccccccccceEEE-cCCCEEEEEECCC
Confidence            322222    245688999999966655 4566788887664

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.24  E-value=0.00036  Score=62.06  Aligned_cols=152  Identities=14%  Similarity=-0.005  Sum_probs=92.9

Q ss_pred             EccCCCeeEEEe-----cCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           76 FDPLGRGPYTGV-----ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        76 ~d~~G~~ly~~~-----~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      ..|||+.+|+..     ....|+.+|.+.-+.+....                      .+...++++++++..|||++.
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~----------------------~g~~~~~a~SpDg~~l~v~~~   66 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID----------------------GGFLPNPVVADDGSFIAHAST   66 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE----------------------ECSSCEEEECTTSSCEEEEEE
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE----------------------CCCCCceEEcCCCCEEEEEeC
Confidence            357888888764     24578889887333332211                      233337999996666999764


Q ss_pred             C----------CCeEEEeCCCCeeEEceeccCC---CcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCce
Q 016318          151 Y----------FGLMKVGPEGGLATSLATEAEG---VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       151 ~----------~gl~~~d~~~g~~~~~~~~~~~---~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      .          ..|..+|..+++..........   .-...|+.++++++|+ +|+++.+                +...
T Consensus        67 ~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~  130 (355)
T d2bbkh_          67 VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPA  130 (355)
T ss_dssp             EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCE
T ss_pred             CCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC----------------CCce
Confidence            2          2388899998875543222111   1234678899999985 6776533                1345


Q ss_pred             EEEEeCCCCeEEEeccC--------CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          217 VLKYDPTTKQTTVLLRN--------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       217 l~~~d~~~~~~~~~~~~--------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      +..++..+++.......        ......+++++|++.+++.......+......
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         131 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             eeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence            66677777654332211        11234578899999888886666666666544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.17  E-value=0.0021  Score=57.44  Aligned_cols=156  Identities=10%  Similarity=-0.019  Sum_probs=87.8

Q ss_pred             cceEEEccCCCeeEEEec----------CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEec
Q 016318           71 PESMAFDPLGRGPYTGVA----------DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (391)
Q Consensus        71 Pe~i~~d~~G~~ly~~~~----------~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~  140 (391)
                      +.++++.+||+.+|+...          ++.|..||....+..........             ........|.++.+++
T Consensus        68 ~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~-------------~~~~~~~~~~~~~~s~  134 (373)
T d2madh_          68 LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA-------------PRFDVGPYSWMNANTP  134 (373)
T ss_pred             CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCc-------------ceeEeccCCCcEEEEe
Confidence            337999999998888754          35677777662222211110000             1111245678899998


Q ss_pred             CCCcEEEEECCC--CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceE
Q 016318          141 KTGDLYIADAYF--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRV  217 (391)
Q Consensus       141 ~~g~L~V~d~~~--gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l  217 (391)
                      ++..+++.....  .+..++..+.+....        ...+..+++.++|. +|++.+.                 ++.+
T Consensus       135 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~~g~~~~v~~~~-----------------dg~~  189 (373)
T d2madh_         135 NNADLLFFQFAAGPAVGLVVQGGSSDDQL--------LSSPTCYHIHPGAPSTFYLLCA-----------------QGGL  189 (373)
T ss_pred             CCCcEEEEEEcCCCceEEeeccCCeEEEE--------eccceeEEEecCCCcEEEEEcC-----------------CCeE
Confidence            666678776542  255556555443221        12456778888874 6666643                 5788


Q ss_pred             EEEeCCCCeEEEeccC-------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          218 LKYDPTTKQTTVLLRN-------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       218 ~~~d~~~~~~~~~~~~-------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ..++..+++.......       ...+..+..++++..+++  ...++++.++..+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~  243 (373)
T d2madh_         190 AKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP--VYSGKILQADISA  243 (373)
T ss_pred             EEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEe--cCCceEEEEEcCC
Confidence            8898877765543321       122334455555543333  3455666666543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.15  E-value=8.2e-05  Score=68.36  Aligned_cols=261  Identities=14%  Similarity=0.042  Sum_probs=142.9

Q ss_pred             cccccCcceEEEc--cCCCeeEEEe-cCCEEEEEeCCcee--EEEeecCCCcccCCCCCCccccccccCccCccceEEEe
Q 016318           65 LNQIQGPESMAFD--PLGRGPYTGV-ADGRILFWDGLKWT--DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (391)
Q Consensus        65 ~~~~~gPe~i~~d--~~G~~ly~~~-~~g~I~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d  139 (391)
                      -|+.+.|+--..|  .||+.+|+.. .+.||-|++.+.++  .+...                     +....++|++..
T Consensus        82 ~GD~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i---------------------Pn~~~~HG~r~~  140 (459)
T d1fwxa2          82 NGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI---------------------PNAKGIHGLRPQ  140 (459)
T ss_dssp             CCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC---------------------SSCCSEEEEEEC
T ss_pred             CCCcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEec---------------------CCCCCCceeecc
Confidence            4788999443433  2788777765 57999999998333  23222                     123457888876


Q ss_pred             cCCCcEEEEECCC-------------------C-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCE-EEEeCCCc
Q 016318          140 KKTGDLYIADAYF-------------------G-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV-YFTDSSTN  198 (391)
Q Consensus       140 ~~~g~L~V~d~~~-------------------g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~l-y~td~~~~  198 (391)
                      +..+..||.....                   + +..+|.++.++..-.. ..    ..+.+++++++|.. |++...+.
T Consensus       141 ~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~-V~----g~ld~~~~s~dGK~af~TsyNSE  215 (459)
T d1fwxa2         141 KWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL-VS----GNLDNCDADYEGKWAFSTSYNSE  215 (459)
T ss_dssp             CSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEE-ES----SCCCCEEECSSSSEEEEEESCTT
T ss_pred             cCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEee-eC----CChhccccCCCCCEEEEEecccc
Confidence            6455677764211                   2 4577887765543221 12    25789999999974 44432221


Q ss_pred             cc--c-------hhhee-----eecccC------CCceEEEEeCCCC---eEEEeccCCCCcceEEEccCCCEEEEEeCC
Q 016318          199 YQ--R-------RNFMQ-----LVFSAE------DTGRVLKYDPTTK---QTTVLLRNLQFPNGLSLSKDKSFFVFCEGS  255 (391)
Q Consensus       199 ~~--~-------~~~~~-----~~~~~~------~~g~l~~~d~~~~---~~~~~~~~~~~~ngia~~~d~~~l~v~et~  255 (391)
                      -.  .       .++..     .+.+..      .-+++-..|..+.   ...........|.|+.++|||++++++...
T Consensus       216 ~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKL  295 (459)
T d1fwxa2         216 KGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL  295 (459)
T ss_dssp             CCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTT
T ss_pred             CCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCc
Confidence            10  0       01100     000000      0123445554421   122223334579999999999999999988


Q ss_pred             CCeEEEEEecc-------ccCccceeecccC-C-CCCceEeCCCCCEEEEEcCCCchhhhhhhc----C--ccceeeeee
Q 016318          256 VGRLHKYWLIG-------EKAGNLEAFAILP-G-YPDNVRTNEKGEFWVAIHCRRSLYSHLMAL----Y--PKIRHFLLK  320 (391)
Q Consensus       256 ~~~I~~~~~~g-------~~~g~~~~~~~~~-g-~p~~i~~d~~G~lwva~~~~~~~~~~~l~~----~--~~~~~~~~~  320 (391)
                      ...+.+++++-       ...-...+.+..+ | .|-.-.+|.+|+.|.++.-...+..|-+..    +  .....++.+
T Consensus       296 s~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k  375 (459)
T d1fwxa2         296 SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDK  375 (459)
T ss_dssp             SSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEE
T ss_pred             CCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceec
Confidence            89999999751       1111111222211 2 366678999999999988765554432211    1  112345555


Q ss_pred             cCccceeeeEEeecCccceEEEEECCCCCEEEEEeCC
Q 016318          321 LPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDS  357 (391)
Q Consensus       321 l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~  357 (391)
                      +++--..-..+...+..      .+++|+.+.+++..
T Consensus       376 ~~v~y~~gh~~~~~g~t------~~~dgk~l~~~nk~  406 (459)
T d1fwxa2         376 LDVHYQPGHLKTVMGET------LDATNDWLVCLSKF  406 (459)
T ss_dssp             EECSSCEEEEEETTTTS------TTCCSSEEEEEESC
T ss_pred             cccccCCCCCccCcCCc------CCCCCCEEEEeccc
Confidence            55533221111111111      35788888888653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=0.001  Score=59.01  Aligned_cols=156  Identities=15%  Similarity=0.193  Sum_probs=88.8

Q ss_pred             ceEEEcc--CCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-E
Q 016318           72 ESMAFDP--LGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-L  145 (391)
Q Consensus        72 e~i~~d~--~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L  145 (391)
                      .++++.|  +|+.+.++..||.|..|+..   ...........               ......+....+++++ +++ |
T Consensus        67 ~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~---------------~~~~~~~~v~~v~~s~-~~~~l  130 (325)
T d1pgua1          67 TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS---------------EFQVLAGPISDISWDF-EGRRL  130 (325)
T ss_dssp             EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEE---------------EEECCSSCEEEEEECT-TSSEE
T ss_pred             EEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccc---------------ccccccCcEEEEEECC-CCCcc
Confidence            4678865  67777789999999888653   11111000000               0111234456888988 555 4


Q ss_pred             EEEECC--CCeEEEeCCCCee-EEceeccCCCcccCCcceeecCCCCE-EEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          146 YIADAY--FGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       146 ~V~d~~--~gl~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~~G~l-y~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                      .++...  .-+..++.++++. ..+.    + .....+.+++.+++.. .++.+.                 ++.+..||
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-h~~~v~~~~~~~~~~~~~~~~~~-----------------d~~v~~~d  188 (325)
T d1pgua1         131 CVVGEGRDNFGVFISWDSGNSLGEVS----G-HSQRINACHLKQSRPMRSMTVGD-----------------DGSVVFYQ  188 (325)
T ss_dssp             EEEECCSSCSEEEEETTTCCEEEECC----S-CSSCEEEEEECSSSSCEEEEEET-----------------TTEEEEEE
T ss_pred             ceeeccccceEEEEeecccccceeee----e-cccccccccccccccceEEEeec-----------------cccccccc
Confidence            444433  2366777776642 2221    1 1134677888887754 444322                 46788888


Q ss_pred             CCCCeEEEeccC----CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          222 PTTKQTTVLLRN----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       222 ~~~~~~~~~~~~----~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      ..+.+...-...    ......++++||+..++++-+..+.|..+++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~  236 (325)
T d1pgua1         189 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  236 (325)
T ss_dssp             TTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             ccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec
Confidence            776655443322    22457899999854455655667788888754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=0.00088  Score=60.16  Aligned_cols=152  Identities=14%  Similarity=0.062  Sum_probs=90.9

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~  151 (391)
                      .++++.++|+.+++++.+|.|..++...........                    ........+.+.+++..+.+++..
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~--------------------~h~~~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ--------------------GHEQDIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEECCCCCcceecccccccccccccccccccccc--------------------cccccccccccccccccccccccc
Confidence            468999999999999999999999876322222111                    012334567777733445566555


Q ss_pred             CCeEEEeCCCCeeEEceeccCCCcccCCcceeec-CCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe
Q 016318          152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL  230 (391)
Q Consensus       152 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d-~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  230 (391)
                      ..+..+|..+..........     .....+++. .+|++.++.+.                 +|.+..||..+++....
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~~~~~~~~~~~  242 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIE-----DGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVER  242 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECS-----SCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEE
T ss_pred             eeeeeeeccccccccccccc-----cccccccccCCCCCeEEEEcC-----------------CCeEEEeecccCcccee
Confidence            55888888876544332211     122333443 36666665432                 46788888877654332


Q ss_pred             cc-C-------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          231 LR-N-------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       231 ~~-~-------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .. .       ....+.++++|+++.++.+ +..+.|..+++..
T Consensus       243 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~d~~i~iwd~~~  285 (388)
T d1erja_         243 LDSENESGTGHKDSVYSVVFTRDGQSVVSG-SLDRSVKLWNLQN  285 (388)
T ss_dssp             EC------CCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEEC--
T ss_pred             eccccccccCCCCCEEEEEECCCCCEEEEE-ECCCcEEEEeccC
Confidence            21 1       1234678999999966655 5567788887653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.06  E-value=0.00011  Score=68.51  Aligned_cols=122  Identities=7%  Similarity=-0.094  Sum_probs=73.0

Q ss_pred             CccceEEE--ecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCc-ccchhhe
Q 016318          131 GRPLGLRF--DKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTN-YQRRNFM  205 (391)
Q Consensus       131 g~P~gi~~--d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~-~~~~~~~  205 (391)
                      .+|.....  .+++..|||++.... |.++|.++.+.........   ...|.++++.++| +.|++..+.. .+.-+-.
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~---g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg  146 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPN---VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG  146 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT---CCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCC---CCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence            34654443  343456999998755 9999999987665433222   2368999999998 4788753211 0000000


Q ss_pred             eeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC
Q 016318          206 QLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS  255 (391)
Q Consensus       206 ~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~  255 (391)
                      ..+.+-.....+..+|+.+.+...-......|.+++++|||+++|++...
T Consensus       147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         147 TDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             SCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             cccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecC
Confidence            00001111234556888877654322223478899999999999998644

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.05  E-value=0.0006  Score=60.56  Aligned_cols=78  Identities=10%  Similarity=-0.068  Sum_probs=50.9

Q ss_pred             eEEEccCCCeeEEEe----------cCCEEEEEeCCceeEEEe--ecCCCcccCCCCCCccccccccCccCccceEEEec
Q 016318           73 SMAFDPLGRGPYTGV----------ADGRILFWDGLKWTDFAF--TSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~----------~~g~I~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~  140 (391)
                      ++++++||+.+|+..          .++.|..||....+....  ....               ........|.++++++
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~---------------~~~~~~~~~~~~~~s~  115 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA---------------PRFLVGTYPWMTSLTP  115 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC---------------CCCCBSCCGGGEEECT
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc---------------ceeecCCCCceEEEec
Confidence            799999999888754          357788898772222211  1110               1112356789999999


Q ss_pred             CCCcEEEEECCCC--eEEEeCCCCeeE
Q 016318          141 KTGDLYIADAYFG--LMKVGPEGGLAT  165 (391)
Q Consensus       141 ~~g~L~V~d~~~g--l~~~d~~~g~~~  165 (391)
                      +++.+++++...+  +..++..+++..
T Consensus       116 dg~~~~v~~~~~~~~~~~~~~~~~~~~  142 (355)
T d2bbkh_         116 DGKTLLFYQFSPAPAVGVVDLEGKAFK  142 (355)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CCCeeEEecCCCCceeeeeecCCCcEe
Confidence            6667899876533  677788877543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=0.0028  Score=54.11  Aligned_cols=153  Identities=11%  Similarity=0.084  Sum_probs=93.8

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .-.+|+++++|+.+.+++.||.|..|+....+......                    ...+....+++++ ++.+.+..
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--------------------~h~~~V~~~~~~~-~~~~~~~~   77 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--------------------GHTDSVQDISFDH-SGKLLASC   77 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--------------------CCSSCEEEEEECT-TSSEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe--------------------CCCCcEEEEeeec-cccccccc
Confidence            34588999999999999999999999876211111110                    1123456788888 56655444


Q ss_pred             CC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          150 AY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       150 ~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      .. ..+...+....+........    ......+.+.++++..++.+.                 ++.+..+|..+++..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----------------d~~~~~~~~~~~~~~  136 (317)
T d1vyhc1          78 SADMTIKLWDFQGFECIRTMHGH----DHNVSSVSIMPNGDHIVSASR-----------------DKTIKMWEVQTGYCV  136 (317)
T ss_dssp             ETTSCCCEEETTSSCEEECCCCC----SSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEE
T ss_pred             ccccccccccccccccccccccc----cccceeeeccCCCceEEeecc-----------------CcceeEeecccceee
Confidence            33 34556665544333221111    123456777888876665532                 467888888777654


Q ss_pred             Eec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318          229 VLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  265 (391)
Q Consensus       229 ~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~  265 (391)
                      ... ........++++++++.+..+ ...+.|..++..
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~v~~~~~~  173 (317)
T d1vyhc1         137 KTFTGHREWVRMVRPNQDGTLIASC-SNDQTVRVWVVA  173 (317)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETT
T ss_pred             eEEccCCCcceeeecccCCCEEEEE-eCCCeEEEEeec
Confidence            433 334466788999999965544 455677777654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.04  E-value=0.00063  Score=61.05  Aligned_cols=199  Identities=12%  Similarity=-0.019  Sum_probs=104.9

Q ss_pred             cccCcceEEEccCCCeeE-EEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318           67 QIQGPESMAFDPLGRGPY-TGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (391)
Q Consensus        67 ~~~gPe~i~~d~~G~~ly-~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L  145 (391)
                      ....|.++++.++|+.+| +...++.+..++.............    +          ........+..+..+. ++.+
T Consensus       163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~-~~~~  227 (373)
T d2madh_         163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGA----M----------LTAAQNLLTQPAQANK-SGRI  227 (373)
T ss_pred             EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeee----c----------cccCccceeeeEEECC-CceE
Confidence            345788899999887555 5677888888876511111100000    0          0000112223334443 3333


Q ss_pred             EEEECCCCeEEEeCCCCeeEEceecc--------CCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCce
Q 016318          146 YIADAYFGLMKVGPEGGLATSLATEA--------EGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       146 ~V~d~~~gl~~~d~~~g~~~~~~~~~--------~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      ........++.++..++.+.......        ..........++..++|. +|+......        ........+.
T Consensus       228 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~  299 (373)
T d2madh_         228 VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS--------AWKLHAAAKE  299 (373)
T ss_pred             EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCc--------eEEeecCCCe
Confidence            22222334677776665443332110        000112334456666664 444432110        1112233567


Q ss_pred             EEEEeCCCCeEEEeccCCCCcceEEEccCCCE-EEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCC
Q 016318          217 VLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSF-FVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK  290 (391)
Q Consensus       217 l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~-l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~  290 (391)
                      +..+|..+++..........+.+++++|||+. +|++....+.|..++....+  ....+......|..|++..+
T Consensus       300 v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~--~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         300 VTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD--QDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC--EEEEECCCCCCCcEEEEecC
Confidence            88999988876555555567889999999986 46676777889999865421  12222222346888887654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.97  E-value=0.00016  Score=65.49  Aligned_cols=205  Identities=7%  Similarity=-0.118  Sum_probs=107.4

Q ss_pred             cCcceEEEccCCCeeEEEec-CCEEEEEeCC--ceeEEEeecC---------CCcccCCCCCCc---------cc-----
Q 016318           69 QGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSN---------NRSELCNPKPIA---------TS-----  122 (391)
Q Consensus        69 ~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~~---------~~-----  122 (391)
                      ..|.++++.+||+.+|++.. ++.+..++..  +.........         .....+.+.+..         ..     
T Consensus       124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~  203 (368)
T d1mdah_         124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence            46889999999998888764 5888888765  2111111000         000000000100         00     


Q ss_pred             cccccCccCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceecc--------CCCcccCCcceeecCCC-CEEEE
Q 016318          123 YLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEA--------EGVPLRFTNDLDIDDEG-NVYFT  193 (391)
Q Consensus       123 ~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~--------~~~~~~~~~~l~~d~~G-~ly~t  193 (391)
                      ..........+.....++ ++.++. .....++.++..++....+....        .+........+++.+++ .+|++
T Consensus       204 ~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~  281 (368)
T d1mdah_         204 AQCTGAQNCSSQAAQANY-PGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CCSCTTSCBCSCCEEETT-TTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             cccccccccceeeccccc-CcEEEE-ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEE
Confidence            000011122334444444 333322 22334666665555444332110        01111234567888876 56665


Q ss_pred             eCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCC-EEEEEeCCCCeEEEEEeccccCccc
Q 016318          194 DSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKS-FFVFCEGSVGRLHKYWLIGEKAGNL  272 (391)
Q Consensus       194 d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~-~l~v~et~~~~I~~~~~~g~~~g~~  272 (391)
                      .....         ........++..+|..+++..........+.+++++|||+ .+|++....+.|+.++...   ++.
T Consensus       282 ~~~~~---------~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t---gk~  349 (368)
T d1mdah_         282 TVEHS---------RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS---DQD  349 (368)
T ss_dssp             EEECS---------SCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS---CEE
T ss_pred             ecCCC---------ceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC---CCE
Confidence            42110         0112233578899999887654444445788999999997 5788888788999998653   222


Q ss_pred             eeecccCCCCCceEe
Q 016318          273 EAFAILPGYPDNVRT  287 (391)
Q Consensus       273 ~~~~~~~g~p~~i~~  287 (391)
                      .--..+...|..|++
T Consensus       350 ~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         350 QSSVELDKGPESLSV  364 (368)
T ss_dssp             EEECCCCSCCCEEEC
T ss_pred             EEEEECCCCCCEEEE
Confidence            222234457888876

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=0.0028  Score=55.96  Aligned_cols=199  Identities=13%  Similarity=0.033  Sum_probs=101.1

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEE-eCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-CCcE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFW-DGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGDL  145 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-~g~L  145 (391)
                      .|.+++++++|+.+.++..+..+++. +..  ....+...                   ..+.......++|+|. ++++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~-------------------~gh~~~~v~~v~fsP~~~g~~   79 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF-------------------TGHGSSVVTTVKFSPIKGSQY   79 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE-------------------CTTTTSCEEEEEECSSTTCCE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE-------------------eCCCCCCEEEEEEeeCCCCCE
Confidence            46788999999976666655544443 222  11111111                   0111233568899863 3455


Q ss_pred             EEEECCCC-eEEEeCCCCe----eEEcee-ccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318          146 YIADAYFG-LMKVGPEGGL----ATSLAT-EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       146 ~V~d~~~g-l~~~d~~~g~----~~~~~~-~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      +++....| |..+|...++    .+.... ... ......++++..++|...++.+.               ...+.+..
T Consensus        80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~---------------~~~~~~~~  143 (325)
T d1pgua1          80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGE---------------GRDNFGVF  143 (325)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEEC---------------CSSCSEEE
T ss_pred             EEEEeCCCCEEEeeecCCcceeeeecccccccc-cccCcEEEEEECCCCCccceeec---------------cccceEEE
Confidence            54333444 5555543221    111100 000 01123567888999976665422               12345666


Q ss_pred             EeCCCCeEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc---CCCCCceEeCCC-CCEE
Q 016318          220 YDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL---PGYPDNVRTNEK-GEFW  294 (391)
Q Consensus       220 ~d~~~~~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~---~g~p~~i~~d~~-G~lw  294 (391)
                      ++.++++...... .-...+.+++++++..++++-...+.|..++....+  ....+...   .+....++++++ |.+.
T Consensus       144 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~v~~v~~~pd~~~~l  221 (325)
T d1pgua1         144 ISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPDSGEFV  221 (325)
T ss_dssp             EETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred             EeecccccceeeeecccccccccccccccceEEEeecccccccccccccc--cceecccccCCCCccEEeeeccccceec
Confidence            6766665433333 234557899999988666655556777777643211  11111111   223456788876 4566


Q ss_pred             EEEcCCCchhh
Q 016318          295 VAIHCRRSLYS  305 (391)
Q Consensus       295 va~~~~~~~~~  305 (391)
                      ++....+.+..
T Consensus       222 ~s~~~d~~i~i  232 (325)
T d1pgua1         222 ITVGSDRKISC  232 (325)
T ss_dssp             EEEETTCCEEE
T ss_pred             cccccccceee
Confidence            55444444433

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.89  E-value=0.0001  Score=69.42  Aligned_cols=165  Identities=14%  Similarity=0.195  Sum_probs=96.4

Q ss_pred             ccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCC---C------CcceEEEccC-
Q 016318          176 LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL---Q------FPNGLSLSKD-  245 (391)
Q Consensus       176 ~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~---~------~~ngia~~~d-  245 (391)
                      +..|.+|++.+||+|||++..                 +|+|+++++++++.+.+....   .      .--||+++|| 
T Consensus        26 L~~P~~la~~pdg~llVter~-----------------~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf   88 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CCCceEEEEeCCCeEEEEEec-----------------CCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCC
Confidence            457999999999999999832                 489999999888876654321   1      1237999985 


Q ss_pred             --CCEEEEEeCC------------CCeEEEEEeccccC--ccce-eecccCCC----CCceEeCCCCCEEEEEcCCCchh
Q 016318          246 --KSFFVFCEGS------------VGRLHKYWLIGEKA--GNLE-AFAILPGY----PDNVRTNEKGEFWVAIHCRRSLY  304 (391)
Q Consensus       246 --~~~l~v~et~------------~~~I~~~~~~g~~~--g~~~-~~~~~~g~----p~~i~~d~~G~lwva~~~~~~~~  304 (391)
                        ..++|++.+.            ...+.++..++...  ...+ ++..++..    -..|.++++|.+|++........
T Consensus        89 ~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~  168 (450)
T d1crua_          89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQ  168 (450)
T ss_dssp             TTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTS
T ss_pred             ccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCccc
Confidence              5679987541            12366666554321  1122 22233321    23599999999999987532211


Q ss_pred             hh------------------hhhcCccceeeeeecCccce----------eeeEEeecCccceEEEEECCCCCEEEEEeC
Q 016318          305 SH------------------LMALYPKIRHFLLKLPISAK----------THYLIHVGGRLHAMAVKYSPEGKILQVLED  356 (391)
Q Consensus       305 ~~------------------~l~~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~  356 (391)
                      ..                  ........++++. +.....          ....+..-|..++.-+.++++|++...=+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilr-i~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~l~~~e~G  247 (450)
T d1crua_         169 LAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLR-LNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQG  247 (450)
T ss_dssp             GGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEE-ECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEEC
T ss_pred             ccccccccccccCcccccccccccccccCceEE-eeccccccccccccccccceEEEeccccccceeecccceeeecccc
Confidence            00                  0011223455543 211100          011233445666777888999997766555


Q ss_pred             CC
Q 016318          357 SK  358 (391)
Q Consensus       357 ~~  358 (391)
                      ++
T Consensus       248 ~~  249 (450)
T d1crua_         248 PN  249 (450)
T ss_dssp             SS
T ss_pred             cc
Confidence            44

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.81  E-value=0.0011  Score=57.87  Aligned_cols=149  Identities=10%  Similarity=-0.018  Sum_probs=92.6

Q ss_pred             ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE-EEEEC
Q 016318           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YIADA  150 (391)
Q Consensus        72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L-~V~d~  150 (391)
                      ......+.+..+.++..++.|..|+...........                    ...+...++++++ ++++ +++..
T Consensus       188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--------------------~h~~~i~~v~~~p-~~~~l~s~s~  246 (340)
T d1tbga_         188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT--------------------GHESDINAICFFP-NGNAFATGSD  246 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC--------------------CCSSCEEEEEECT-TSSEEEEEET
T ss_pred             eeeccccccceeEEeecCceEEEEECCCCcEEEEEe--------------------CCCCCeEEEEECC-CCCEEEEEeC
Confidence            345566677777888889999988876322222211                    0123456889998 5554 44544


Q ss_pred             CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe
Q 016318          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL  230 (391)
Q Consensus       151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  230 (391)
                      ...+..++.............  ........++++++|++.++.+.                 +|.|..||..+++....
T Consensus       247 d~~i~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~g~~-----------------dg~i~iwd~~~~~~~~~  307 (340)
T d1tbga_         247 DATCRLFDLRADQELMTYSHD--NIICGITSVSFSKSGRLLLAGYD-----------------DFNCNVWDALKADRAGV  307 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCT--TCCSCEEEEEECSSSCEEEEEET-----------------TSCEEEEETTTCCEEEE
T ss_pred             CCeEEEEeecccccccccccc--cccCceEEEEECCCCCEEEEEEC-----------------CCEEEEEECCCCcEEEE
Confidence            445888888766433221111  11234577889999987777543                 57899999887765544


Q ss_pred             ccC-CCCcceEEEccCCCEEEEEeCCCCeEEE
Q 016318          231 LRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHK  261 (391)
Q Consensus       231 ~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~  261 (391)
                      ..+ ....+.++++||+++|+.+ ...+.|..
T Consensus       308 ~~~H~~~V~~l~~s~d~~~l~s~-s~Dg~v~i  338 (340)
T d1tbga_         308 LAGHDNRVSCLGVTDDGMAVATG-SWDSFLKI  338 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEE-ETTSCEEE
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEE-ccCCEEEE
Confidence            333 3456789999999966554 44455544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.66  E-value=0.00043  Score=62.54  Aligned_cols=102  Identities=11%  Similarity=0.077  Sum_probs=67.8

Q ss_pred             ccccCcceEEEccCCCeeEEEe------------------cCCEEEEEeCCceeEEEeecCCCcccCCCCCCcccccccc
Q 016318           66 NQIQGPESMAFDPLGRGPYTGV------------------ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNE  127 (391)
Q Consensus        66 ~~~~gPe~i~~d~~G~~ly~~~------------------~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (391)
                      ..+..|.+|++..+|. +|++.                  ..+.+++++++..+..+.                      
T Consensus       147 ~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~----------------------  203 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE----------------------  203 (340)
T ss_dssp             TTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE----------------------
T ss_pred             ccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC----------------------
Confidence            3467899999999998 55552                  125666666654333321                      


Q ss_pred             CccCccceEEEecCCCcEEEEECCCC-eEEEeCCCC-eeEEcee-ccCCCcccCCcceeecC-CCCEEEEeC
Q 016318          128 HICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGG-LATSLAT-EAEGVPLRFTNDLDIDD-EGNVYFTDS  195 (391)
Q Consensus       128 ~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g-~~~~~~~-~~~~~~~~~~~~l~~d~-~G~ly~td~  195 (391)
                       ....|.||+++++++.|||++...+ |.+++.++. ..+.... ..    ...|.++.+|+ +|.+|++..
T Consensus       204 -~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l----~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         204 -GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF----DTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             -EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC----SSEEEEEEECTTTCCEEEEEE
T ss_pred             -CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC----CCCCCccEEecCCCEEEEEEC
Confidence             1467999999986667999998755 777766533 2222211 12    24689999986 789999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=0.013  Score=49.67  Aligned_cols=187  Identities=13%  Similarity=0.083  Sum_probs=96.7

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      ...++++++++..+.++..++.+..++..........                    .........+.+.+++..+..+.
T Consensus        61 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~  120 (317)
T d1vyhc1          61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM--------------------HGHDHNVSSVSIMPNGDHIVSAS  120 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC--------------------CCCSSCEEEEEECSSSSEEEEEE
T ss_pred             cEEEEeeeccccccccccccccccccccccccccccc--------------------ccccccceeeeccCCCceEEeec
Confidence            4467888888887777777777777665421111110                    01123345677777333444444


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                      ....+..++..+++........    ......++.+++|++.++.+.                 ++.+..++..+++...
T Consensus       121 ~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~-----------------d~~v~~~~~~~~~~~~  179 (317)
T d1vyhc1         121 RDKTIKMWEVQTGYCVKTFTGH----REWVRMVRPNQDGTLIASCSN-----------------DQTVRVWVVATKECKA  179 (317)
T ss_dssp             TTSEEEEEETTTCCEEEEEECC----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEE
T ss_pred             cCcceeEeecccceeeeEEccC----CCcceeeecccCCCEEEEEeC-----------------CCeEEEEeeccceeeE
Confidence            4444777788776543322211    124567788888887776533                 4567777766655433


Q ss_pred             eccC-CCCcceEEE--------------------ccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318          230 LLRN-LQFPNGLSL--------------------SKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  288 (391)
Q Consensus       230 ~~~~-~~~~ngia~--------------------~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d  288 (391)
                      .... ......+++                    ..++..+..+ ...+.|..+++...+  ....+....+....++.+
T Consensus       180 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~--~~~~~~~~~~~v~~~~~~  256 (317)
T d1vyhc1         180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG-SRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFH  256 (317)
T ss_dssp             EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE-ETTSEEEEEETTTTE--EEEEEECCSSCEEEEEEC
T ss_pred             EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec-cCCCEEEEEECCCCc--EEEEEeCCCCCEEEEEEC
Confidence            2211 111222222                    2334434333 445667777654311  111222222334567888


Q ss_pred             CCCCEEEEEcCC
Q 016318          289 EKGEFWVAIHCR  300 (391)
Q Consensus       289 ~~G~lwva~~~~  300 (391)
                      ++|++.++....
T Consensus       257 ~~~~~l~s~~~d  268 (317)
T d1vyhc1         257 SGGKFILSCADD  268 (317)
T ss_dssp             SSSSCEEEEETT
T ss_pred             CCCCEEEEEECC
Confidence            888866654443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=0.025  Score=48.69  Aligned_cols=69  Identities=17%  Similarity=0.073  Sum_probs=45.7

Q ss_pred             EccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeE
Q 016318           76 FDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLM  155 (391)
Q Consensus        76 ~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~  155 (391)
                      ++.+|+.+++++.||.|..|+....+.+....                    ...+...++++.+ ++.|+.+.....|.
T Consensus        19 ~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~--------------------~H~~~V~~l~~s~-~~~l~s~s~D~~i~   77 (355)
T d1nexb2          19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLS--------------------GHDGGVWALKYAH-GGILVSGSTDRTVR   77 (355)
T ss_dssp             EEEETTEEEEEETTTEEEEEETTTTEEEEEEE--------------------CCSSCEEEEEEET-TTEEEEEETTCCEE
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCcEEEEEE--------------------CCCCCEEEEEEcC-CCEEEEEecccccc
Confidence            44567889999999999999887333332211                    1124467889987 66666666555588


Q ss_pred             EEeCCCCeeE
Q 016318          156 KVGPEGGLAT  165 (391)
Q Consensus       156 ~~d~~~g~~~  165 (391)
                      .++....+..
T Consensus        78 iw~~~~~~~~   87 (355)
T d1nexb2          78 VWDIKKGCCT   87 (355)
T ss_dssp             EEETTTTEEE
T ss_pred             cccccccccc
Confidence            8887766543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.038  Score=47.17  Aligned_cols=154  Identities=14%  Similarity=0.003  Sum_probs=84.6

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      .........+++.++++..||.|..++......+.....                    ......++.++  ++.|+.+.
T Consensus       177 ~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~--------------------~~~~v~~~~~~--~~~l~s~s  234 (342)
T d2ovrb2         177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG--------------------HQSLTSGMELK--DNILVSGN  234 (342)
T ss_dssp             SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC--------------------CCSCEEEEEEE--TTEEEEEE
T ss_pred             ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecc--------------------cccceeEEecC--CCEEEEEc
Confidence            344555666788889999999999998763222221110                    01222345554  34555555


Q ss_pred             CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE-
Q 016318          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT-  228 (391)
Q Consensus       150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-  228 (391)
                      ....|..+|....+.......... .....  .++..++++.++.+.                 +|.|..||.++++.. 
T Consensus       235 ~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~s~s~-----------------Dg~i~iwd~~tg~~i~  294 (342)
T d2ovrb2         235 ADSTVKIWDIKTGQCLQTLQGPNK-HQSAV--TCLQFNKNFVITSSD-----------------DGTVKLWDLKTGEFIR  294 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECSTTS-CSSCE--EEEEECSSEEEEEET-----------------TSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEecccccccccccccce-eeece--eecccCCCeeEEEcC-----------------CCEEEEEECCCCCEEE
Confidence            555588888876654332211110 11122  233445566665533                 588999999887653 


Q ss_pred             EeccC-----CCCcceEEEccCCCEEEEEeCC---CCeEEEEEec
Q 016318          229 VLLRN-----LQFPNGLSLSKDKSFFVFCEGS---VGRLHKYWLI  265 (391)
Q Consensus       229 ~~~~~-----~~~~ngia~~~d~~~l~v~et~---~~~I~~~~~~  265 (391)
                      .+...     ....+.++++|++..+..+...   ..+|+.++.+
T Consensus       295 ~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            33211     1235678999998754444222   1357777653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.0083  Score=54.16  Aligned_cols=147  Identities=14%  Similarity=0.120  Sum_probs=89.1

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d  149 (391)
                      ...++++.++| .+.+++.||.|..|+..............              ...........++|++ +++++++.
T Consensus       186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~--------------~l~~h~~~V~~l~~sp-dg~~l~sg  249 (393)
T d1sq9a_         186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH--------------SMINNSNSIRSVKFSP-QGSLLAIA  249 (393)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC-----------------CCCCCEEEEEECS-STTEEEEE
T ss_pred             cEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc--------------ccccccceEEEccccc-ccceeeee
Confidence            35678999988 48899999999999877322221111000              0111234467899999 66655543


Q ss_pred             CC-C--C-eEEEeCCCCeeEE-ceeccCC--------CcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCce
Q 016318          150 AY-F--G-LMKVGPEGGLATS-LATEAEG--------VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGR  216 (391)
Q Consensus       150 ~~-~--g-l~~~d~~~g~~~~-~~~~~~~--------~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~  216 (391)
                      .. +  + +..+|.++++... +......        ..-...+.+++.++|++.++.+.                 ++.
T Consensus       250 s~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~-----------------D~~  312 (393)
T d1sq9a_         250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-----------------DGK  312 (393)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-----------------TSE
T ss_pred             cCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC-----------------CCE
Confidence            32 2  2 5567888775432 2111000        01134678999999998887643                 688


Q ss_pred             EEEEeCCCCeEEEeccCC-----CCcceEEEccCCCEE
Q 016318          217 VLKYDPTTKQTTVLLRNL-----QFPNGLSLSKDKSFF  249 (391)
Q Consensus       217 l~~~d~~~~~~~~~~~~~-----~~~ngia~~~d~~~l  249 (391)
                      |..||.++++......+-     .....++++++++.+
T Consensus       313 v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~  350 (393)
T d1sq9a_         313 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL  350 (393)
T ss_dssp             EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred             EEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEE
Confidence            999999998765544321     134467888888743

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.023  Score=48.56  Aligned_cols=157  Identities=13%  Similarity=-0.022  Sum_probs=81.1

Q ss_pred             CcceEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318           70 GPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (391)
Q Consensus        70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~  146 (391)
                      +-.+|+++|+|+.|.+++.||.|..|+..   ....+...                   . ...+....++|.++++.++
T Consensus        13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~-------------------~-~h~~~V~~v~f~~~~~~~l   72 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-------------------L-RYKHPLLCCNFIDNTDLQI   72 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-------------------E-ECSSCEEEEEEEESSSEEE
T ss_pred             CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe-------------------c-CCCCCEEEEEEeCCCCCEE
Confidence            34689999999999999999998888643   21111111                   0 0123456888887444444


Q ss_pred             E-EECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318          147 I-ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK  225 (391)
Q Consensus       147 V-~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  225 (391)
                      + +....-+..++..++...........   ..........++...++.+.                 .+.+..+|..++
T Consensus        73 ~sg~~d~~v~~w~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~wd~~~~  132 (342)
T d1yfqa_          73 YVGTVQGEILKVDLIGSPSFQALTNNEA---NLGICRICKYGDDKLIAASW-----------------DGLIEVIDPRNY  132 (342)
T ss_dssp             EEEETTSCEEEECSSSSSSEEECBSCCC---CSCEEEEEEETTTEEEEEET-----------------TSEEEEECHHHH
T ss_pred             EEcccccceeeeeccccccccccccccc---cccccccccccccccccccc-----------------ccccceeecccc
Confidence            4 44334477777765543322211110   01111222334444444322                 345666664322


Q ss_pred             e----EEEecc---CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318          226 Q----TTVLLR---NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       226 ~----~~~~~~---~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~  267 (391)
                      .    ......   ........++.++++.++.+ +..+.|..+++...
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~  180 (342)
T d1yfqa_         133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG-MNNSQVQWFRLPLC  180 (342)
T ss_dssp             TTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE-ESTTEEEEEESSCC
T ss_pred             ccceeeecccccccccceeeeeeeeccCCceeee-cCCCcEEEEecccC
Confidence            1    111111   11123345667777755555 55678888887643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.11  Score=44.36  Aligned_cols=147  Identities=12%  Similarity=0.114  Sum_probs=83.2

Q ss_pred             EEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCe
Q 016318           75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (391)
Q Consensus        75 ~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl  154 (391)
                      ...++|+.++++..++.|..++...........                    ........+.+++.+..++++.....|
T Consensus       166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i  225 (355)
T d1nexb2         166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS--------------------GHTDRIYSTIYDHERKRCISASMDTTI  225 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             ccccccceeeeecccceeeeeecccccceeeee--------------------ccccccccccccccceeeecccccceE
Confidence            344567878888899989888876333222111                    012344567788744445555544558


Q ss_pred             EEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCC
Q 016318          155 MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL  234 (391)
Q Consensus       155 ~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~  234 (391)
                      ..++..++..........    .....++.+  ++..++.+.                 +|.|..||..+++........
T Consensus       226 ~i~d~~~~~~~~~~~~h~----~~v~~~~~~--~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~  282 (355)
T d1nexb2         226 RIWDLENGELMYTLQGHT----ALVGLLRLS--DKFLVSAAA-----------------DGSIRGWDANDYSRKFSYHHT  282 (355)
T ss_dssp             EEEETTTCCEEEEECCCS----SCCCEEEEC--SSEEEEECT-----------------TSEEEEEETTTCCEEEEEECT
T ss_pred             Eeeecccccccccccccc----ccccccccc--cceeeeeec-----------------ccccccccccccceecccccC
Confidence            888888775443222111    234555554  445555433                 578889998876544332222


Q ss_pred             CCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          235 QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       235 ~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ....-.++++++++ +++- ..+.|..+++..
T Consensus       283 ~~~~~~~~~~~~~~-l~~g-~d~~i~vwd~~t  312 (355)
T d1nexb2         283 NLSAITTFYVSDNI-LVSG-SENQFNIYNLRS  312 (355)
T ss_dssp             TCCCCCEEEECSSE-EEEE-ETTEEEEEETTT
T ss_pred             CceEEEEEcCCCCE-EEEE-eCCEEEEEECCC
Confidence            22222356778874 4443 356888888653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.067  Score=45.07  Aligned_cols=111  Identities=9%  Similarity=0.031  Sum_probs=62.7

Q ss_pred             CccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC----------CEEEEeCCCccc
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG----------NVYFTDSSTNYQ  200 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G----------~ly~td~~~~~~  200 (391)
                      +.+..+++++++..|.+++..+.|..+|..+++.....  ..+ .....+.+++.+++          .+.++.      
T Consensus       163 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg------  233 (287)
T d1pgua2         163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR--WAF-RTSKINAISWKPAEKGANEEEIEEDLVATG------  233 (287)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC--SCC-CSSCEEEEEECCCC------CCSCCEEEEE------
T ss_pred             CceeEEEeccCccccccccccccccceeeccccccccc--ccc-cccccceeeecccccccccccCCCCeeEee------
Confidence            45678999984444666766666999999887654321  111 01234555555443          333333      


Q ss_pred             chhheeeecccCCCceEEEEeCCC-CeE-EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318          201 RRNFMQLVFSAEDTGRVLKYDPTT-KQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       201 ~~~~~~~~~~~~~~g~l~~~d~~~-~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~  263 (391)
                                 ..++.+..||..+ ++. ..+.......+++++++++. ++-+ ...+.|..++
T Consensus       234 -----------s~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~-g~D~~v~iW~  285 (287)
T d1pgua2         234 -----------SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSS-GADACIKRWN  285 (287)
T ss_dssp             -----------ETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEE-ETTSCEEEEE
T ss_pred             -----------cCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEE-ECCCeEEEEE
Confidence                       2357888888754 333 33322334568899999875 4333 3345555443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.14  Score=43.02  Aligned_cols=138  Identities=8%  Similarity=-0.047  Sum_probs=71.8

Q ss_pred             EEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318          136 LRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       136 i~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      .++.+++..+.++....+ +..++..+.+......   ......+..++++++|...++.+.                 +
T Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~g~~-----------------d  183 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK---TPLRAKPSYISISPSETYIAAGDV-----------------M  183 (287)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECS---SCCSSCEEEEEECTTSSEEEEEET-----------------T
T ss_pred             eeeeccCcceeeeccccceeeeeeccccceeeeee---eccCCceeEEEeccCccccccccc-----------------c
Confidence            344543455666655544 5566655332221111   111124678899999986665433                 5


Q ss_pred             ceEEEEeCCCCeEEEeccC--CCCcceEEEccC----------CCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC
Q 016318          215 GRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKD----------KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP  282 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~--~~~~ngia~~~d----------~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p  282 (391)
                      |.+..||..+++.....-.  ....+.++++|+          ++ ++++....+.|+.+++..+. .....+....+..
T Consensus       184 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~-~l~sgs~D~~i~iw~~~~~~-~~~~~~~~h~~~V  261 (287)
T d1pgua2         184 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED-LVATGSLDTNIFIYSVKRPM-KIIKALNAHKDGV  261 (287)
T ss_dssp             SCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC-EEEEEETTSCEEEEESSCTT-CCEEETTSSTTCE
T ss_pred             ccccceeecccccccccccccccccceeeecccccccccccCCCC-eeEeecCCCeEEEEECCCCC-eEEEEeCCCCCCe
Confidence            7899999988776443211  223456776654          44 34444555677777764321 1111111112234


Q ss_pred             CceEeCCCCCEEE
Q 016318          283 DNVRTNEKGEFWV  295 (391)
Q Consensus       283 ~~i~~d~~G~lwv  295 (391)
                      .+++..+++.+..
T Consensus       262 ~~v~~~~~~~l~s  274 (287)
T d1pgua2         262 NNLLWETPSTLVS  274 (287)
T ss_dssp             EEEEEEETTEEEE
T ss_pred             EEEEECCCCEEEE
Confidence            5566677775443

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=96.09  E-value=0.24  Score=39.45  Aligned_cols=163  Identities=18%  Similarity=0.079  Sum_probs=95.8

Q ss_pred             hhccccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCC-----ceeEEE-eecCCCcccCCCCCCccccccccC
Q 016318           55 NLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-----KWTDFA-FTSNNRSELCNPKPIATSYLKNEH  128 (391)
Q Consensus        55 ~~l~~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  128 (391)
                      +=+..+..+..+.+..=.-|+++|+|+ +|+-..+ .+++=.+.     .|-..+ ..+     .|              
T Consensus        26 n~~~rA~~lGk~g~~n~~~i~fsP~G~-LyaVr~~-~lY~Gp~~s~~nq~wf~~atrIG-----~g--------------   84 (235)
T d1tl2a_          26 NWLARATLIGKGGWSNFKFLFLSPGGE-LYGVLND-KIYKGTPPTHDNDNWMGRAKKIG-----NG--------------   84 (235)
T ss_dssp             CHHHHSEEEESSSCTTCSEEEECTTSC-EEEEETT-EEEEESCCCSTTCCHHHHCEEEE-----CS--------------
T ss_pred             cccchhhhcCcccccceeEEEECCCCc-EEEEECC-eEEECCCCCcchHHHHHhhhhcc-----cC--------------
Confidence            456677777777677777799999999 7876544 77765433     110000 000     00              


Q ss_pred             ccCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEce---eccCCCcccCCcceeecCCCCEEEEeCCCcccchhhe
Q 016318          129 ICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLA---TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFM  205 (391)
Q Consensus       129 ~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~---~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~  205 (391)
                      .-++=.-+.||| +|-||+... ..|++=.|.+.+.....   +.+....-+...-|-+||+|.||...+          
T Consensus        85 gWn~FkflffdP-~G~LyaVt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~----------  152 (235)
T d1tl2a_          85 GWNQFQFLFFDP-NGYLYAVSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHG----------  152 (235)
T ss_dssp             CGGGCSEEEECT-TSCEEEEET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEET----------
T ss_pred             cccceEEEEECC-CceEEEecC-cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEEC----------
Confidence            012334678999 899999874 45888877665432221   111111122334566799999999874          


Q ss_pred             eeecccCCCceEEEEeCCCCe-------EEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 016318          206 QLVFSAEDTGRVLKYDPTTKQ-------TTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY  262 (391)
Q Consensus       206 ~~~~~~~~~g~l~~~d~~~~~-------~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~  262 (391)
                               +++++-.|.++.       .+.+- +.-..+..|.++|||+ ||...  +..+++=
T Consensus       153 ---------~~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~--~g~~Y~~  205 (235)
T d1tl2a_         153 ---------QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKFYED  205 (235)
T ss_dssp             ---------TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEEEEE
T ss_pred             ---------CcEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCc-EEEEe--CCeEEec
Confidence                     367777665432       12222 2233567899999999 55542  3455553

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.07  E-value=0.43  Score=42.13  Aligned_cols=137  Identities=18%  Similarity=0.264  Sum_probs=75.4

Q ss_pred             CCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeec------CCCC-E-EEEeCCCcccchhheeeecccC
Q 016318          142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID------DEGN-V-YFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       142 ~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d------~~G~-l-y~td~~~~~~~~~~~~~~~~~~  212 (391)
                      ...|.+++.. .||+.+|.++.++..+.       ...+|.|++-      .++. + +.++.+.             +.
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~G~~l~~~~-------~Gr~NNVDvr~~~~l~~~~~di~vasnR~~-------------~~   98 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLEGKMLHSYH-------TGKLNNVDIRYDFPLNGKKVDIAAASNRSE-------------GK   98 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETTCCEEEECC-------SSCEEEEEEEEEEEETTEEEEEEEEEECCT-------------TT
T ss_pred             CccEEEEEcCcCCEEEEcCCCcEEEecc-------cCCcCccccccccccCCcceEEEEEeCCcC-------------cc
Confidence            4556666554 57999999977766542       1245666543      1221 2 2222110             00


Q ss_pred             CCceEEEEeCCCCeEEEecc-------CCCCcceEEE--ccC-CCE-EEEEeCCCCeEEEEEeccccCccc--eeec--c
Q 016318          213 DTGRVLKYDPTTKQTTVLLR-------NLQFPNGLSL--SKD-KSF-FVFCEGSVGRLHKYWLIGEKAGNL--EAFA--I  277 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~-------~~~~~ngia~--~~d-~~~-l~v~et~~~~I~~~~~~g~~~g~~--~~~~--~  277 (391)
                      .+-.++.+|+..+.+..+..       .+..+.|+|+  +++ +.. ++++ ...+++..|.+...+.+..  +...  .
T Consensus        99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~-~k~G~v~q~~l~~~~~g~v~~~lvr~f~  177 (353)
T d1h6la_          99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVT-GKEGEFEQYELNADKNGYISGKKVRAFK  177 (353)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEE-CSSSEEEEEEEEECTTSSEEEEEEEEEE
T ss_pred             eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEE-cCCceEEEEEEEcCCCCceeeEeeeccC
Confidence            01246777877776665532       2335789998  554 443 3344 4456777776653333322  2222  2


Q ss_pred             cCCCCCceEeCCC-CCEEEEEcC
Q 016318          278 LPGYPDNVRTNEK-GEFWVAIHC  299 (391)
Q Consensus       278 ~~g~p~~i~~d~~-G~lwva~~~  299 (391)
                      ++..+.++.+|.+ +.||++.-.
T Consensus       178 ~~~q~EGCVvDde~~~LyisEE~  200 (353)
T d1h6la_         178 MNSQTEGMAADDEYGSLYIAEED  200 (353)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCccceEEEeCCCCcEEEecCc
Confidence            5566788888865 569998654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.31  Score=44.88  Aligned_cols=150  Identities=9%  Similarity=0.056  Sum_probs=82.4

Q ss_pred             eEEEecCCCcEEEEECCC-----CeEEEeCCCCeeEEceeccCCCccc-CCcceeecCCCC-EEEEeCCCcccchhheee
Q 016318          135 GLRFDKKTGDLYIADAYF-----GLMKVGPEGGLATSLATEAEGVPLR-FTNDLDIDDEGN-VYFTDSSTNYQRRNFMQL  207 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~-----gl~~~d~~~g~~~~~~~~~~~~~~~-~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~  207 (391)
                      .+.+.+ ++++++.-..+     .++.+|+.+|+.+.+.......-+. ......+.++|. +++...+           
T Consensus       259 ~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~s-----------  326 (465)
T d1xfda1         259 MVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI-----------  326 (465)
T ss_dssp             EEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE-----------
T ss_pred             eeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEee-----------
Confidence            345655 67777653322     2888999999888775543221111 123456777774 4332211           


Q ss_pred             ecccCCCceEEEEe-------CCCCeEEEeccCCCCcce-EEEccCCCEEEEEeCC----CCeEEEEEeccccCccceee
Q 016318          208 VFSAEDTGRVLKYD-------PTTKQTTVLLRNLQFPNG-LSLSKDKSFFVFCEGS----VGRLHKYWLIGEKAGNLEAF  275 (391)
Q Consensus       208 ~~~~~~~g~l~~~d-------~~~~~~~~~~~~~~~~ng-ia~~~d~~~l~v~et~----~~~I~~~~~~g~~~g~~~~~  275 (391)
                        +..+.+.++.+.       ..++..+.+..+-..... ++++++++.||++.+.    ...|+++.++|....+  ..
T Consensus       327 --e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~--~l  402 (465)
T d1xfda1         327 --PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ--CL  402 (465)
T ss_dssp             --CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB--CS
T ss_pred             --eecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcce--ee
Confidence              112234555553       223333444433322233 4689999999987653    3469999888753222  11


Q ss_pred             c-cc--CCCCCceEeCCCCCEEEEEcCC
Q 016318          276 A-IL--PGYPDNVRTNEKGEFWVAIHCR  300 (391)
Q Consensus       276 ~-~~--~g~p~~i~~d~~G~lwva~~~~  300 (391)
                      . .+  .+.-..+.++++|+++|-...+
T Consensus       403 t~~~~~~~~~~~~~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         403 SCDLVENCTYFSASFSHSMDFFLLKCEG  430 (465)
T ss_dssp             STTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             ccccCCCCCEEEEEECCCCCEEEEEeec
Confidence            1 11  1123468899999998876664

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.93  E-value=0.071  Score=48.94  Aligned_cols=120  Identities=12%  Similarity=0.016  Sum_probs=75.3

Q ss_pred             eEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccC-CCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccC
Q 016318          135 GLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAE-GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAE  212 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~-~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~  212 (391)
                      .+.+.+ ++.++.. ..++++.+|+.+++.+.+..... ........++.+.|||+ |.++...         ..+..+.
T Consensus        21 ~~~W~~-d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~---------~~~~r~s   89 (470)
T d2bgra1          21 SLRWIS-DHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY---------VKQWRHS   89 (470)
T ss_dssp             CCEECS-SSEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEE---------EECSSSC
T ss_pred             CCEeCC-CCEEEEE-cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECC---------cceeeec
Confidence            455655 5555443 35569999999998766543211 11123467888999997 3333211         0111223


Q ss_pred             CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318          213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~  267 (391)
                      ..+.++.||.++++...+...-.....+.++|||+.+.+..  ++.++..+..+.
T Consensus        90 ~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g  142 (470)
T d2bgra1          90 YTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNL  142 (470)
T ss_dssp             EEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred             cCceEEEEECCCCcccccccCCccccccccccCcceeeEee--cccceEEECCCC
Confidence            34678999999998876654444556788999999777653  457888776653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.67  E-value=0.45  Score=39.30  Aligned_cols=85  Identities=12%  Similarity=0.171  Sum_probs=53.5

Q ss_pred             CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318          153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       153 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  231 (391)
                      .|+.+|.++++.+.+... .+    ...+.+..|||+ |.++....            .......++.++..+++.+.+.
T Consensus        22 dl~~~d~~~g~~~~Lt~~-~~----~~~~p~~SPDG~~iaf~~~~~------------~~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2          22 DLWEHDLKSGSTRKIVSN-LG----VINNARFFPDGRKIAIRVMRG------------SSLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             EEEEEETTTCCEEEEECS-SS----EEEEEEECTTSSEEEEEEEES------------TTCCEEEEEEEETTTTEEEECC
T ss_pred             cEEEEECCCCCEEEEecC-CC----cccCEEECCCCCEEEEEEeeC------------CCCCceEEEEEEecCCceEEee
Confidence            366777777877766432 11    235567899995 66553110            0011246899999999888774


Q ss_pred             cCC-------CCcceEEEccCCCEEEEEeC
Q 016318          232 RNL-------QFPNGLSLSKDKSFFVFCEG  254 (391)
Q Consensus       232 ~~~-------~~~ngia~~~d~~~l~v~et  254 (391)
                      ...       ......+++||++.++++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          85 YFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             ecCCCccCccccccccccCCCCCEEEEEEc
Confidence            221       23456789999998887644

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.56  E-value=0.7  Score=40.70  Aligned_cols=96  Identities=9%  Similarity=0.157  Sum_probs=56.6

Q ss_pred             eEEEeCCCCeeEEceeccCC--CcccCCcceee--cC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEe---CCCC
Q 016318          154 LMKVGPEGGLATSLATEAEG--VPLRFTNDLDI--DD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD---PTTK  225 (391)
Q Consensus       154 l~~~d~~~g~~~~~~~~~~~--~~~~~~~~l~~--d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d---~~~~  225 (391)
                      ++.+++..+.++.+......  .....+++++.  ++ +|.+|+....                ..|.+..|.   ...+
T Consensus       103 ~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~----------------k~G~v~q~~l~~~~~g  166 (353)
T d1h6la_         103 IYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG----------------KEGEFEQYELNADKNG  166 (353)
T ss_dssp             EEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC----------------SSSEEEEEEEEECTTS
T ss_pred             EEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEc----------------CCceEEEEEEEcCCCC
Confidence            67778777766655332111  12345789887  55 5766655422                134444332   2223


Q ss_pred             eEEE-ec---cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          226 QTTV-LL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       226 ~~~~-~~---~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      .+.. +.   .....+-|++++.+.+.||++|- +.+||+|..+-
T Consensus       167 ~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~  210 (353)
T d1h6la_         167 YISGKKVRAFKMNSQTEGMAADDEYGSLYIAEE-DEAIWKFSAEP  210 (353)
T ss_dssp             SEEEEEEEEEECSSCEEEEEEETTTTEEEEEET-TTEEEEEESST
T ss_pred             ceeeEeeeccCCCCccceEEEeCCCCcEEEecC-ccceEEEEecc
Confidence            2211 11   22345679999999899999986 56999998763

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.34  Score=40.61  Aligned_cols=58  Identities=9%  Similarity=0.190  Sum_probs=42.3

Q ss_pred             CCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEE
Q 016318          178 FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFC  252 (391)
Q Consensus       178 ~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~  252 (391)
                      ..+.++++++|++.++.+.                 +|.|..||.++++...-........-++++++++.+.++
T Consensus       253 ~v~~l~~sp~~~~lasg~~-----------------Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a  310 (342)
T d1yfqa_         253 PVNSIEFSPRHKFLYTAGS-----------------DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA  310 (342)
T ss_dssp             CEEEEEECTTTCCEEEEET-----------------TSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEE
T ss_pred             cceeEEecCCccEEEEECC-----------------CCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEE
Confidence            4578899999987777643                 688999999888654433333444568899999977766

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.43  E-value=0.12  Score=46.00  Aligned_cols=120  Identities=8%  Similarity=-0.006  Sum_probs=71.7

Q ss_pred             CccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCC--CcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEG--VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV  208 (391)
Q Consensus       131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~--~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~  208 (391)
                      ..+..+++++ ++.|..+...+.|..+|..+++..........  .....++.+++.|+|++.++.+..           
T Consensus       185 ~~~~~v~~s~-dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D-----------  252 (393)
T d1sq9a_         185 QFATSVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS-----------  252 (393)
T ss_dssp             CCCCEEEECT-TSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE-----------
T ss_pred             CcEEEEEECC-CCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCC-----------
Confidence            3456788887 66555444334488889988754322111110  012357889999999987775320           


Q ss_pred             cccCCCceEEEEeCCCCeEEEeccC--------------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          209 FSAEDTGRVLKYDPTTKQTTVLLRN--------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       209 ~~~~~~g~l~~~d~~~~~~~~~~~~--------------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                         ...+.+..||.++++.......              -..-+.++++||+++| ++-...+.|..++++.
T Consensus       253 ---~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l-~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         253 ---NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             ---TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE-EEEETTSEEEEEETTT
T ss_pred             ---CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee-EEECCCCEEEEEECCC
Confidence               0013456688887765433211              1234679999999954 5556667888887653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.36  E-value=0.21  Score=45.19  Aligned_cols=108  Identities=7%  Similarity=-0.092  Sum_probs=61.0

Q ss_pred             CcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCC-cccchhheeeecc-cCCCceEE
Q 016318          143 GDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSST-NYQRRNFMQLVFS-AEDTGRVL  218 (391)
Q Consensus       143 g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~-~~~~~~~~~~~~~-~~~~g~l~  218 (391)
                      ..|||.|..+. |.+||.++-+...+.....+   ..+.++...+++ +.|+...+. .-+..+-...+-+ .+-.+.+-
T Consensus       100 rylFVNDkan~RVAvIdl~~fkt~kIi~iPn~---~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2         100 RFLFMNDKANTRVARVRCDVMKCDAILEIPNA---KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSC---CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             eEEEEEcCCCceEEEEECcceeeeEEEecCCC---CCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            45899997755 99999998776555432221   245666665544 456654221 0010000000000 01123456


Q ss_pred             EEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEe
Q 016318          219 KYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       219 ~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~e  253 (391)
                      .+|.++.++..-..-...+.++++++||++++++.
T Consensus       177 ~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         177 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred             EEecCCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence            78988876543222234678999999999999874

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.20  E-value=0.043  Score=46.10  Aligned_cols=53  Identities=15%  Similarity=0.018  Sum_probs=39.5

Q ss_pred             ceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--C---CeEEEEEeccc
Q 016318          215 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--V---GRLHKYWLIGE  267 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~---~~I~~~~~~g~  267 (391)
                      |.|+.+|.++++.+.+........+.++||||+.|.++...  .   ..|++++..+.
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            57888888888888887666666788999999988776321  1   25888887653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.05  E-value=0.12  Score=47.24  Aligned_cols=139  Identities=8%  Similarity=-0.020  Sum_probs=77.0

Q ss_pred             eEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318           73 SMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (391)
Q Consensus        73 ~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~  150 (391)
                      ++..-+++..+|.  .++.|+.++..  +-..+...  .               ..........+..|++++..|.++..
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~--~---------------~~~~~~~~i~~~~~SpDg~~i~~~~~   81 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLEN--S---------------TFDEFGHSINDYSISPDGQFILLEYN   81 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECT--T---------------TTTTSSSCCCEEEECTTSSEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEch--h---------------hhhhccCccceeEECCCCCEEEEEEC
Confidence            3344467764553  46778888877  22222111  0               11112334568889994444444321


Q ss_pred             --------CCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318          151 --------YFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD  221 (391)
Q Consensus       151 --------~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d  221 (391)
                              ..+ ++.+|.++++...+....     .....+.+.|||+..+...                  ++.++.++
T Consensus        82 ~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~-----~~~~~~~~SPDG~~ia~~~------------------~~~l~~~~  138 (470)
T d2bgra1          82 YVKQWRHSYTASYDIYDLNKRQLITEERIP-----NNTQWVTWSPVGHKLAYVW------------------NNDIYVKI  138 (470)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEECCSSCCC-----TTEEEEEECSSTTCEEEEE------------------TTEEEEES
T ss_pred             CcceeeeccCceEEEEECCCCcccccccCC-----ccccccccccCcceeeEee------------------cccceEEE
Confidence                    112 778899998776553321     1234567788886333221                  24567777


Q ss_pred             CCCCeEEEecc-------------------CCCCcceEEEccCCCEEEEEe
Q 016318          222 PTTKQTTVLLR-------------------NLQFPNGLSLSKDKSFFVFCE  253 (391)
Q Consensus       222 ~~~~~~~~~~~-------------------~~~~~ngia~~~d~~~l~v~e  253 (391)
                      ..+++...+..                   ......++.++|||+.|.++.
T Consensus       139 ~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             CCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence            66665544321                   122346788999999887764

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=94.86  E-value=0.82  Score=40.96  Aligned_cols=158  Identities=11%  Similarity=0.081  Sum_probs=86.0

Q ss_pred             cceEEEccC-CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC-CcEE
Q 016318           71 PESMAFDPL-GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT-GDLY  146 (391)
Q Consensus        71 Pe~i~~d~~-G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~-g~L~  146 (391)
                      -.+|+++|. .+++|+++..|+|+|-+..  .|+.+.....                ...........|++|+.+ +.+|
T Consensus        14 ~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~----------------~~~~~~~~~~~iavdp~np~~vy   77 (427)
T d2ebsa1          14 ITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIE----------------AQDMNIMGTESIALDPNNPDRLY   77 (427)
T ss_dssp             EEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCC----------------GGGGGGCSEEEEEEETTEEEEEE
T ss_pred             EEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCC----------------CCCcccccEeEEEECCCCCCEEE
Confidence            457899874 5679999988889987554  5655421100                000112335578898742 5689


Q ss_pred             EEECC------CCeEEEeCCCCeeEEceeccC----CCcccCCcceeecCC--CCEEEEeCCCcccchhheeeecccCCC
Q 016318          147 IADAY------FGLMKVGPEGGLATSLATEAE----GVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRNFMQLVFSAEDT  214 (391)
Q Consensus       147 V~d~~------~gl~~~d~~~g~~~~~~~~~~----~~~~~~~~~l~~d~~--G~ly~td~~~~~~~~~~~~~~~~~~~~  214 (391)
                      ++...      .+|++=.-.+...+.+.....    .........|+++|.  +.+|++...                  
T Consensus        78 ~~tg~~~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~------------------  139 (427)
T d2ebsa1          78 LAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRT------------------  139 (427)
T ss_dssp             EEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSS------------------
T ss_pred             EEeccccCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccc------------------
Confidence            88632      235554433334444332211    011123456888874  468887632                  


Q ss_pred             ceEEEEeCCCCeEEEeccC---CC---CcceEEEccC-CCEEEEEeCCCCeEEEE
Q 016318          215 GRVLKYDPTTKQTTVLLRN---LQ---FPNGLSLSKD-KSFFVFCEGSVGRLHKY  262 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~---~~---~~ngia~~~d-~~~l~v~et~~~~I~~~  262 (391)
                      ++|++-.-.....+.+...   ..   ....|+++|. ...+|++.....+|+|-
T Consensus       140 ~gl~~S~D~G~tW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~S  194 (427)
T d2ebsa1         140 EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYVT  194 (427)
T ss_dssp             SCEEEESSTTSSCEECTTSSCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEEE
T ss_pred             cceeeecCCCceeeecccCcccccCCccceEEEecccccceeeeeeeecccceec
Confidence            5677654433344433211   11   1234677764 45578776666778774

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.08  E-value=0.59  Score=44.04  Aligned_cols=126  Identities=14%  Similarity=0.111  Sum_probs=64.5

Q ss_pred             CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccC-ccceEEEecCCCcEEEEECCCCeEEE
Q 016318           79 LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICG-RPLGLRFDKKTGDLYIADAYFGLMKV  157 (391)
Q Consensus        79 ~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~P~gi~~d~~~g~L~V~d~~~gl~~~  157 (391)
                      +|. +|+++.+++|+.+|.+.-+.+-........ ..         .....+. ...+++..  ++.+|+++....|+.+
T Consensus        66 ~g~-vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~-~~---------~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Al  132 (560)
T d1kv9a2          66 DGV-IYTSMSWSRVIAVDAASGKELWRYDPEVAK-VK---------ARTSCCDAVNRGVALW--GDKVYVGTLDGRLIAL  132 (560)
T ss_dssp             TTE-EEEEEGGGEEEEEETTTCCEEEEECCCCCG-GG---------GGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEE
T ss_pred             CCE-EEEECCCCeEEEEeCCCCCEEEEECCCCCc-cc---------cccccccccccCccee--CCeEEEEeCCCEEEEE
Confidence            565 999999999999998721111111100000 00         0000111 12244554  4689998877779999


Q ss_pred             eCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318          158 GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       158 d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  229 (391)
                      |.++|+..--....+.........--+--+|.+++.....            +....|.|..||.+||+..-
T Consensus       133 da~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~------------~~~~~G~v~a~D~~TG~~~W  192 (560)
T d1kv9a2         133 DAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGA------------EYGVRGFVSAYDADTGKLAW  192 (560)
T ss_dssp             ETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCT------------TTCCBCEEEEEETTTCCEEE
T ss_pred             ECCCCcEEeccCccCcccceeeeeeeeeecCcccccccce------------eccccceEEEEECCCceEEe
Confidence            9998864322111111110011111111255666655332            22335788899998887643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.93  E-value=2.6  Score=39.49  Aligned_cols=79  Identities=18%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             ceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEcee---ccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecc
Q 016318          134 LGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT---EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFS  210 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~---~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~  210 (391)
                      .|+++.  ++++|+++....|+.+|.+||++.--..   ...+.....+-  .+. ++.+|+..++.            +
T Consensus       109 rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p--~v~-~~~vivg~~~~------------~  171 (571)
T d2ad6a1         109 RGLAYG--AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP--FVA-KDTVLMGCSGA------------E  171 (571)
T ss_dssp             CCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--EEE-TTEEEEECBCG------------G
T ss_pred             Ccceee--CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecC--eEe-CCeEEEeeccc------------c
Confidence            466776  5899999877779999999997532111   11111111111  222 57888877542            2


Q ss_pred             cCCCceEEEEeCCCCeEEE
Q 016318          211 AEDTGRVLKYDPTTKQTTV  229 (391)
Q Consensus       211 ~~~~g~l~~~d~~~~~~~~  229 (391)
                      ....|.|..||.+||+..-
T Consensus       172 ~~~~G~v~a~D~~TG~~~W  190 (571)
T d2ad6a1         172 LGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             GTCCCEEEEEETTTCCEEE
T ss_pred             ccccCcEEEEECCCCcEEE
Confidence            2345889999999998654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=1.5  Score=36.32  Aligned_cols=168  Identities=13%  Similarity=0.004  Sum_probs=81.7

Q ss_pred             EEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCe
Q 016318           75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (391)
Q Consensus        75 ~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl  154 (391)
                      +++.+|+.+++++.||.|..|+....+.+....                    ...+....+.+++  +.|+.+....-+
T Consensus        22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~--------------------~h~~~V~~v~~~~--~~l~s~s~D~~~   79 (342)
T d2ovrb2          22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV--------------------GHTGGVWSSQMRD--NIIISGSTDRTL   79 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECC--------------------CCSSCEEEEEEET--TEEEEEETTSCE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe--------------------CCCCCEEEEEeCC--Cccccceecccc
Confidence            456678889999999999999876322222211                    1124456777764  345555444446


Q ss_pred             EEEeCCCCeeEEceeccCCC--c-ccCCcc-eeecCCCCEEEEeCCCcccch-------------hheeeecccCCCceE
Q 016318          155 MKVGPEGGLATSLATEAEGV--P-LRFTND-LDIDDEGNVYFTDSSTNYQRR-------------NFMQLVFSAEDTGRV  217 (391)
Q Consensus       155 ~~~d~~~g~~~~~~~~~~~~--~-~~~~~~-l~~d~~G~ly~td~~~~~~~~-------------~~~~~~~~~~~~g~l  217 (391)
                      ...+................  . ....+. .....++.+.+.+..+.....             .....++.+..++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence            66665554333221111000  0 000111 122234445544422211000             000112233445667


Q ss_pred             EEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          218 LKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       218 ~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ..+|....+....... ........+++++.++.+ ...+.|..+++..
T Consensus       160 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~-~~dg~i~~~d~~~  206 (342)
T d2ovrb2         160 KVWDPETETCLHTLQG-HTNRVYSLQFDGIHVVSG-SLDTSIRVWDVET  206 (342)
T ss_dssp             EEEEGGGTEEEEEECC-CSSCEEEEEECSSEEEEE-ETTSCEEEEETTT
T ss_pred             EEeecccceeeEEEcC-cccccccccCCCCEEEEE-eCCCeEEEeeccc
Confidence            7777765554333222 223345666788866554 5567788887654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.49  E-value=0.85  Score=42.99  Aligned_cols=125  Identities=13%  Similarity=0.023  Sum_probs=66.8

Q ss_pred             CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCc-cCccceEEEecCCCcEEEEECCCCeEEE
Q 016318           79 LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHI-CGRPLGLRFDKKTGDLYIADAYFGLMKV  157 (391)
Q Consensus        79 ~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~P~gi~~d~~~g~L~V~d~~~gl~~~  157 (391)
                      +|. +|+++.+++|+.+|.+.-+.+-........ ..         ..... .....++.+.  ++++|+++....|+.+
T Consensus        77 ~g~-vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~-~~---------~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~al  143 (573)
T d1kb0a2          77 DGI-MYVSASWSVVHAIDTRTGNRIWTYDPQIDR-ST---------GFKGCCDVVNRGVALW--KGKVYVGAWDGRLIAL  143 (573)
T ss_dssp             TTE-EEEECGGGCEEEEETTTTEEEEEECCCCCG-GG---------GGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEE
T ss_pred             CCE-EEEECCCCeEEEEeCCCCCeEEEeCCCCCc-cc---------ccccccccccccceEE--CCcEEEEecccceeee
Confidence            565 999999999999998722222111100000 00         00000 1112355665  5789999877779999


Q ss_pred             eCCCCeeEEceeccCCCccc-CCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318          158 GPEGGLATSLATEAEGVPLR-FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT  228 (391)
Q Consensus       158 d~~~g~~~~~~~~~~~~~~~-~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  228 (391)
                      |.++|+..--....++.... ....--+-.+|.+++..++.            +....|.|..+|.+||+..
T Consensus       144 da~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~------------~~~~~G~v~a~D~~TG~~~  203 (573)
T d1kb0a2         144 DAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGA------------EYGVRGYITAYDAETGERK  203 (573)
T ss_dssp             ETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCT------------TTCCBCEEEEEETTTCCEE
T ss_pred             ccccccceecccCccCCcceEEeecceEEEeccEEEeeccc------------cccccceEEEEecCCccce
Confidence            99999753211111111110 11111112256777765432            2334578999999998764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.59  Score=42.88  Aligned_cols=112  Identities=10%  Similarity=-0.030  Sum_probs=64.7

Q ss_pred             CCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEe-CCCcccchhheeeecccCCCceEEE
Q 016318          142 TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTD-SSTNYQRRNFMQLVFSAEDTGRVLK  219 (391)
Q Consensus       142 ~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td-~~~~~~~~~~~~~~~~~~~~g~l~~  219 (391)
                      ++.++.-+....|+.+|..+++.+.+.....- ....+....+.+||+ |++.. ....|          .+...+.++.
T Consensus        27 ~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~SpD~~~vl~~~~~~~~~----------r~s~~~~~~i   95 (465)
T d1xfda1          27 DTEFIYREQKGTVRLWNVETNTSTVLIEGKKI-ESLRAIRYEISPDREYALFSYNVEPIY----------QHSYTGYYVL   95 (465)
T ss_dssp             SSCBCCCCSSSCEEEBCGGGCCCEEEECTTTT-TTTTCSEEEECTTSSEEEEEESCCCCS----------SSCCCSEEEE
T ss_pred             CCcEEEEeCCCcEEEEECCCCCEEEEEcCccc-cccccceeEECCCCCeEEEEEccccee----------EeeccccEEE
Confidence            34444434445688888888876665432211 112345567889985 45543 22212          2234578899


Q ss_pred             EeCCCCeEEEeccCCCCc---ceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318          220 YDPTTKQTTVLLRNLQFP---NGLSLSKDKSFFVFCEGSVGRLHKYWLIG  266 (391)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~---ngia~~~d~~~l~v~et~~~~I~~~~~~g  266 (391)
                      ||..+++.+.+.......   .-..+||||+.+.+..  ++.|+..+..+
T Consensus        96 ~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~  143 (465)
T d1xfda1          96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVG  143 (465)
T ss_dssp             EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSS
T ss_pred             EEccCCceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCC
Confidence            999999887774322111   2356888988775543  45677665543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.03  E-value=3.2  Score=33.56  Aligned_cols=74  Identities=15%  Similarity=0.141  Sum_probs=44.2

Q ss_pred             ceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCC--eEEEEEeccccCccceeecccCCCCCceEeCCCCC
Q 016318          215 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG--RLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  292 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~--~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~  292 (391)
                      ..++.++.+++....+...........++||++.+++....++  .|+.++..+   +..+.. ..++.-...+.++||+
T Consensus       151 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~---~~~~~~-~~~~~~~~p~~SPDG~  226 (269)
T d2hqsa1         151 PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---GGVQVL-SSTFLDETPSLAPNGT  226 (269)
T ss_dssp             CEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT---CCEEEC-CCSSSCEEEEECTTSS
T ss_pred             ceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeeccc---ccceEe-ecCccccceEECCCCC
Confidence            4688888888776666544444456679999998776644332  455554332   222222 2223334567889998

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=90.59  E-value=4.7  Score=34.66  Aligned_cols=83  Identities=14%  Similarity=0.069  Sum_probs=54.5

Q ss_pred             ceEEEecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318          134 LGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      .+.++.. ++.+||+-..  ..+.++|+.++..+......   ..+.-...++..||++|+......           ..
T Consensus        79 ~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~---~~r~~~~~~~~~dG~v~v~GG~~~-----------~~  143 (387)
T d1k3ia3          79 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ---VARGYQSSATMSDGRVFTIGGSWS-----------GG  143 (387)
T ss_dssp             CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCS---SCCSSCEEEECTTSCEEEECCCCC-----------SS
T ss_pred             eEEEEec-CCcEEEeecCCCcceeEecCccCccccccccc---ccccccceeeecCCceeeeccccc-----------cc
Confidence            4667777 7888887533  34899999988877653321   122334567778999999863210           11


Q ss_pred             CCCceEEEEeCCCCeEEEec
Q 016318          212 EDTGRVLKYDPTTKQTTVLL  231 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~  231 (391)
                      .....+.+||+.+++.+.+.
T Consensus       144 ~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         144 VFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             SCCCCEEEEETTTTEEEEET
T ss_pred             cccceeeeecCCCCceeecC
Confidence            22346899999999887764

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=90.54  E-value=4.8  Score=35.51  Aligned_cols=121  Identities=12%  Similarity=0.064  Sum_probs=70.9

Q ss_pred             cCccceEEEecC-CCcEEEEECCCCeEEEeCCCCeeEEceeccC--CCcccCCcceeecCC--CCEEEEeCCCcccchhh
Q 016318          130 CGRPLGLRFDKK-TGDLYIADAYFGLMKVGPEGGLATSLATEAE--GVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRNF  204 (391)
Q Consensus       130 ~g~P~gi~~d~~-~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~--~~~~~~~~~l~~d~~--G~ly~td~~~~~~~~~~  204 (391)
                      .++..+|+++|. .+.+|++....||++-+-.+...+.+.....  ........+|++|+.  ..||++....       
T Consensus        11 gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~-------   83 (427)
T d2ebsa1          11 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRY-------   83 (427)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSC-------
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccc-------
Confidence            688999999984 3458888766789988755555665532211  122335678999985  4788875220       


Q ss_pred             eeeecccCCCceEEEEeCCCCeEEEeccCC---------CCcceEEEccC-CCEEEEEeCCCCeEEEEE
Q 016318          205 MQLVFSAEDTGRVLKYDPTTKQTTVLLRNL---------QFPNGLSLSKD-KSFFVFCEGSVGRLHKYW  263 (391)
Q Consensus       205 ~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~---------~~~ngia~~~d-~~~l~v~et~~~~I~~~~  263 (391)
                           .+...++|++-.-.....+.+....         .....|+++|. .+.+|++ +..+.|+|-.
T Consensus        84 -----~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~-~~~~gl~~S~  146 (427)
T d2ebsa1          84 -----VGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRTEGIWKSS  146 (427)
T ss_dssp             -----TTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEE-CSSSCEEEES
T ss_pred             -----cCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccc-ccccceeeec
Confidence                 1112345665543333444443221         12345889885 4557776 5556787743

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.60  E-value=4.3  Score=32.74  Aligned_cols=114  Identities=11%  Similarity=0.032  Sum_probs=60.4

Q ss_pred             eEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318          135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA  211 (391)
Q Consensus       135 gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~  211 (391)
                      .-+++|++..|.+.....   .++.++..++..+.+.....     .......+++|..++.....              
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~i~~~~~~--------------  103 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR-----HNGAPAFSPDGSKLAFALSK--------------  103 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS-----CEEEEEECTTSSEEEEEECT--------------
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeec-----ccccceecCCCCeeeEeeec--------------
Confidence            347888555564443333   28888888887666543221     23445677888644443210              


Q ss_pred             CCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccc
Q 016318          212 EDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGE  267 (391)
Q Consensus       212 ~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~  267 (391)
                      .....+..+......................+++++.++++....  ..|+++++++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~  161 (269)
T d2hqsa1         104 TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  161 (269)
T ss_dssp             TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             CCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc
Confidence            111234444444444444333333333445667777666664433  46888876653

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=89.55  E-value=3.1  Score=32.91  Aligned_cols=116  Identities=15%  Similarity=0.034  Sum_probs=69.6

Q ss_pred             ccccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCCc-----eeEEEeecCCCcccCCCCCCccccccccCccC
Q 016318           57 LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLK-----WTDFAFTSNNRSELCNPKPIATSYLKNEHICG  131 (391)
Q Consensus        57 l~~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  131 (391)
                      ...++++..+.-..=.-+.+||+|- +|+-+ ++.++|-.+..     |.--+..    ...              ..++
T Consensus        75 f~~atrIG~ggWn~FkflffdP~G~-LyaVt-~~~LYr~~pPtn~~q~W~g~a~~----vG~--------------~gw~  134 (235)
T d1tl2a_          75 MGRAKKIGNGGWNQFQFLFFDPNGY-LYAVS-KDKLYKASPPQSDTDNWIARATE----VGS--------------GGWS  134 (235)
T ss_dssp             HHHCEEEECSCGGGCSEEEECTTSC-EEEEE-TTEEEEESCCCSTTCCHHHHSEE----EEC--------------SSGG
T ss_pred             HHhhhhcccCcccceEEEEECCCce-EEEec-CcceecCCcCcccchhhhhhhhh----hcc--------------CCcC
Confidence            4667777776555556789999997 77777 47999986651     1100000    000              0134


Q ss_pred             ccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEce---eccCCCcccCCcceeecCCCCEEEEe
Q 016318          132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLA---TEAEGVPLRFTNDLDIDDEGNVYFTD  194 (391)
Q Consensus       132 ~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~---~~~~~~~~~~~~~l~~d~~G~ly~td  194 (391)
                      .-.-+.||| +|.||..... .+++-.|..+.-....   +.+....-..+..+.+.++|+||...
T Consensus       135 df~~lFFdP-~G~LYaV~~~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         135 GFKFLFFHP-NGYLYAVHGQ-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             GEEEEEECT-TSCEEEEETT-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             ceeEEEECC-CceEEEEECC-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEEe
Confidence            445788999 8999988544 5777776544211111   11111112344678899999999885

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.05  E-value=4.7  Score=37.60  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=43.0

Q ss_pred             CCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCe
Q 016318           79 LGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (391)
Q Consensus        79 ~G~~ly~~~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl  154 (391)
                      +|. +|+++.+++|+.+|..    .|+.-..........|               .....|+++.  ++++|+++....|
T Consensus        68 ~g~-vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~---------------~~~~rg~a~~--~~~i~~~t~~~~l  129 (582)
T d1flga_          68 DGV-IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCC---------------DVVNRGAAIY--GDKVFFGTLDASV  129 (582)
T ss_dssp             TTE-EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSS---------------CSCCCCCEEE--TTEEEEEETTTEE
T ss_pred             CCE-EEEeCCCCeEEEEeCCCCCeEEEEcCCCCCcccccc---------------ccccCCceEe--CCceEEecCCCeE
Confidence            455 9999999999999987    2332111110000000               1112356665  5789999887789


Q ss_pred             EEEeCCCCee
Q 016318          155 MKVGPEGGLA  164 (391)
Q Consensus       155 ~~~d~~~g~~  164 (391)
                      +.+|.+||+.
T Consensus       130 ~alda~tG~~  139 (582)
T d1flga_         130 VALNKNTGKV  139 (582)
T ss_dssp             EEEESSSCCE
T ss_pred             EEecccccce
Confidence            9999999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.54  E-value=7.2  Score=30.86  Aligned_cols=70  Identities=14%  Similarity=0.133  Sum_probs=42.8

Q ss_pred             EEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCe
Q 016318           75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (391)
Q Consensus        75 ~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl  154 (391)
                      +++.+|+.+++++.||.|..|+....+.......                    ..+....+.++  +..|+.+.....+
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~--------------------H~~~V~~v~~~--~~~l~s~s~D~~i   77 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG--------------------HTGSVLCLQYD--ERVIITGSSDSTV   77 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECC--------------------CSSCEEEEECC--SSEEEEEETTSCE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEec--------------------CCCCEeeeecc--cceeecccccccc
Confidence            4566789899999999999998763222222110                    12334566654  3445555544558


Q ss_pred             EEEeCCCCeeEE
Q 016318          155 MKVGPEGGLATS  166 (391)
Q Consensus       155 ~~~d~~~g~~~~  166 (391)
                      ..++..++....
T Consensus        78 ~~~~~~~~~~~~   89 (293)
T d1p22a2          78 RVWDVNTGEMLN   89 (293)
T ss_dssp             EEEESSSCCEEE
T ss_pred             cccccccccccc
Confidence            888887765443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=85.29  E-value=4.2  Score=34.95  Aligned_cols=115  Identities=13%  Similarity=0.105  Sum_probs=69.5

Q ss_pred             ceEEEecCCCcEEEEECC------C------CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccc
Q 016318          134 LGLRFDKKTGDLYIADAY------F------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQR  201 (391)
Q Consensus       134 ~gi~~d~~~g~L~V~d~~------~------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~  201 (391)
                      ...++...+|++||-...      .      -+.++|+.+++.+...... .....+..+.++..+|.+|+....     
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~g~i~v~Gg~-----   95 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGNGQIVVTGGN-----   95 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSCCCSSCEEEECTTSCEEEECSS-----
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC-CCcccceeEEEEecCCcEEEeecC-----
Confidence            344444447888875321      1      1567899988765543221 112235567788899999998632     


Q ss_pred             hhheeeecccCCCceEEEEeCCCCeEEEeccCC--CCcceEEEccCCCEEEEEeCC------CCeEEEEEecc
Q 016318          202 RNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEGS------VGRLHKYWLIG  266 (391)
Q Consensus       202 ~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngia~~~d~~~l~v~et~------~~~I~~~~~~g  266 (391)
                                 ....+.+||+.+.+......-.  ..-.+.++.+||+ +|+.-..      .+.+.+|+...
T Consensus        96 -----------~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          96 -----------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             -----------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred             -----------CCcceeEecCccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCC
Confidence                       1346889999998887654322  2234677778998 5554221      13578887653

>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=82.55  E-value=14  Score=31.80  Aligned_cols=52  Identities=8%  Similarity=-0.100  Sum_probs=31.1

Q ss_pred             ceEEEEeCCCCeEEEeccC---CCCcceEEEccCC-CEEEEEeCCCCeEEEEEeccc
Q 016318          215 GRVLKYDPTTKQTTVLLRN---LQFPNGLSLSKDK-SFFVFCEGSVGRLHKYWLIGE  267 (391)
Q Consensus       215 g~l~~~d~~~~~~~~~~~~---~~~~ngia~~~d~-~~l~v~et~~~~I~~~~~~g~  267 (391)
                      .+|++-+-.......+.+.   ...++.|+.+|+. ..||++ |.++.|+.-+++..
T Consensus       280 ~GvyrS~D~G~TW~~Ind~~~~~g~~~~i~~Dp~~~grvYvg-T~GrGi~y~~~~~~  335 (356)
T d2ebsa2         280 IGLYRSDDNGSTWTRVNDQEHNYSGPTMIEADPKVYGRVYLG-TNGRGIVYADLTNK  335 (356)
T ss_dssp             SEEEEESSTTSSCEECCCTTSCTTCEEEEEECTTSTTCEEEE-EBSSCEEEEECCC-
T ss_pred             EeEEEEeCCCCCceECcCCCCCCCceeEEEcCCCcCCEEEEE-eCCCcEEEEeCCCC
Confidence            4577766554455555432   2346677778752 238888 55667777777653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.36  E-value=5.9  Score=37.11  Aligned_cols=72  Identities=13%  Similarity=0.026  Sum_probs=41.9

Q ss_pred             cEEEEECCCCeEEEeCCCCeeEEceeccCCCcc-cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318          144 DLYIADAYFGLMKVGPEGGLATSLATEAEGVPL-RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP  222 (391)
Q Consensus       144 ~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~-~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~  222 (391)
                      ++|+++....|+.+|.+||+..--....+.... .....-.+. ++.+|+..++.            |....|.|..||.
T Consensus       123 ~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~~vivg~~~~------------e~~~~G~v~A~Da  189 (596)
T d1w6sa_         123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGA------------ELGVRGYLTAYDV  189 (596)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCG------------GGTCCCEEEEEET
T ss_pred             EEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE-CCeEEEeeccc------------cccccCceEEEEC
Confidence            478887666699999999865432211110000 011111111 66788876542            2334688999999


Q ss_pred             CCCeEE
Q 016318          223 TTKQTT  228 (391)
Q Consensus       223 ~~~~~~  228 (391)
                      +||+..
T Consensus       190 ~TG~~~  195 (596)
T d1w6sa_         190 KTGEQV  195 (596)
T ss_dssp             TTCCEE
T ss_pred             CCCcEE
Confidence            999864