Citrus Sinensis ID: 016319

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
MLGVSHLRNRRVLSNGFISLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARLSGNSHVGFGMPALRKMVDRHPKISQLNKTQAEGDGRQQNLQVDGIEVEELPEETTTTSSSDHGERLSLDSEDSDEFWKSFVAPASPINSLVKGNNVLIPQEEQQMSELEEDGTEISDNDSLERSSSQPKPSKGVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKSGNSQKSWPYFEEMNKIFSDSDSEAMATK
cccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccEEEEEEEEEcccccccccccccccEEEEEEcEEEEcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccc
cccccccHccHHcccHHHHHcHHHHHHEEcccccccccHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccEEEEEEEEEEEccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccccccccccccHcccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccc
mlgvshlrnrrvLSNGFISLGKENLQlmysdgdkafgtstelcVDERLRIASDGIIVVSMeilrpqhtdgqsgyslkgkirittrclwldKGKLLDALHKAAHAAlsscpvncplahvEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELnarlsgnshvgfgmpalrkmvdrhpkisqlnktqaegdgrqqnlqvdgieveelpeettttsssdhgerlsldsedsdEFWKsfvapaspinslvkgnnvlipqeEQQMSELeedgteisdndslersssqpkpskgvrrnkwrpEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLAnegfnrtpsqcKSRWSSLLQKYEesksgnsqkswpyfeemnkifsdsdseamatk
mlgvshlrnrrvlsNGFISLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSMEilrpqhtdgqsgyslkgkiRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRkysskrpeviaVAMENPAAVLSDELNARLSGNSHVGFGMPALRKMVDRHPKISQlnktqaegdgrqqnlqvdgieveelpeettttsssdhgerlsLDSEDSDEFWKSFvapaspinslVKGNNVLIPQEEQQMSELEEDGteisdndslersssqpkpskgvrrnkwrpeeVKKLIKMRGELHSKFQVVKGRMALWKEISTHlanegfnrtpsQCKSRWSSLLQKYEesksgnsqkswpyFEEMNkifsdsdseamatk
MLGVSHLRNRRVLSNGFISLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWldkgklldalhkaahaalSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARLSGNSHVGFGMPALRKMVDRHPKISQLNKTQAEGDGRQQNLQVDGIEVeelpeettttsssDHGERLSLDSEDSDEFWKSFVAPASPINSLVKGNNVLIPQEEQQMSELEEDGTEISDNDSLERSSSQPKPSKGVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKSGNSQKSWPYFEEMNKIFSDSDSEAMATK
**********RVLSNGFISLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVL************************************************************************************WKSFVA*******LV*******************************************************LIKMRGELHSKFQVVKGRMALWKEISTHLANEGF***************************************************
*******RNRRVLSNGFISLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDKGKLLDALHKAAHAAL****************SEVLRKVVRKYSSKRPEVIAVAMENPAA*******************************************************************************************************************************************************EEVKKLIKMRGELHS******G**ALWKEISTHLANEGFNRTPSQCKSRWSSLLQK**************YFEEMNK*************
MLGVSHLRNRRVLSNGFISLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARLSGNSHVGFGMPALRKMVDRHPKISQLNKTQAEGDGRQQNLQVDGIEVEEL***********************DEFWKSFVAPASPINSLVKGNNVLIPQEEQ**********************************KWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGF***************************KSWPYFEEMNKIFS**********
***V*HLRNRRVLSNGFISLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARLSGNSHVGFGMP*LRK****************************************************************FV********************************************************KWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKSGNSQKSWPYFEEMNKIFSDS********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLGVSHLRNRRVLSNGFISLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARLSGNSHVGFGMPALRKMVDRHPKISQLNKTQAEGDGRQQNLQVDGIEVEELPEETTTTSSSDHGERLSLDSEDSDEFWKSFVAPASPINSLVKGNNVLIPQEEQQMSELEEDGTEISDNDSLERSSSQPKPSKGVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKSGNSQKSWPYFEEMNKIFSDSDSEAMATK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query391 2.2.26 [Sep-21-2011]
O80450 289 Trihelix transcription fa no no 0.227 0.307 0.336 1e-09
Q9SDW0 323 Trihelix transcription fa no no 0.212 0.256 0.325 1e-08
Q9LU92 372 Trihelix transcription fa no no 0.217 0.228 0.322 2e-08
Q9FX53 406 Trihelix transcription fa no no 0.219 0.211 0.292 1e-07
Q39117575 Trihelix transcription fa no no 0.222 0.151 0.271 8e-07
Q9C882587 Trihelix transcription fa no no 0.212 0.141 0.304 1e-06
Q8IWY8 852 Zinc finger and SCAN doma yes no 0.212 0.097 0.294 7e-05
Q9LZS0 591 Trihelix transcription fa no no 0.225 0.148 0.247 0.0002
Q9NX65 485 Zinc finger protein 434 O no no 0.207 0.167 0.277 0.0002
Q63HK3 967 Zinc finger protein with no no 0.222 0.089 0.269 0.0007
>sp|O80450|TGT3B_ARATH Trihelix transcription factor GT-3b OS=Arabidopsis thaliana GN=GT-3B PE=1 SV=1 Back     alignment and function desciption
 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 293 GVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWS 352
           G R  +W  EE K+LI +RGEL   F   K    LW+ IS  + ++ F R+P QCK +W 
Sbjct: 36  GDRFPQWSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWK 95

Query: 353 SLLQKY---EESKSGNSQKSWPYFEEMNKIFS 381
           +L+ ++   E  ++  +++ +P++++M  IF+
Sbjct: 96  NLVTRFKGCETMEAETARQQFPFYDDMQNIFT 127
Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SDW0|TGT3A_ARATH Trihelix transcription factor GT-3a OS=Arabidopsis thaliana GN=GT-3A PE=1 SV=1 Back     alignment and function description
>sp|Q9LU92|TGT4_ARATH Trihelix transcription factor GT-4 OS=Arabidopsis thaliana GN=GT-4 PE=2 SV=1 Back     alignment and function description
>sp|Q9FX53|TGT1_ARATH Trihelix transcription factor GT-1 OS=Arabidopsis thaliana GN=GT-1 PE=1 SV=1 Back     alignment and function description
>sp|Q39117|TGT2_ARATH Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9C882|GTL1_ARATH Trihelix transcription factor GTL1 OS=Arabidopsis thaliana GN=GTL1 PE=1 SV=2 Back     alignment and function description
>sp|Q8IWY8|ZSC29_HUMAN Zinc finger and SCAN domain-containing protein 29 OS=Homo sapiens GN=ZSCAN29 PE=1 SV=2 Back     alignment and function description
>sp|Q9LZS0|PTL_ARATH Trihelix transcription factor PTL OS=Arabidopsis thaliana GN=PTL PE=2 SV=1 Back     alignment and function description
>sp|Q9NX65|ZN434_HUMAN Zinc finger protein 434 OS=Homo sapiens GN=ZNF434 PE=2 SV=2 Back     alignment and function description
>sp|Q63HK3|ZKSC2_HUMAN Zinc finger protein with KRAB and SCAN domains 2 OS=Homo sapiens GN=ZKSCAN2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
224119634 890 predicted protein [Populus trichocarpa] 0.992 0.435 0.702 1e-146
255540285 880 conserved hypothetical protein [Ricinus 0.951 0.422 0.661 1e-143
225456284 886 PREDICTED: ribonuclease J-like [Vitis vi 0.987 0.435 0.668 1e-134
297734394 1659 unnamed protein product [Vitis vinifera] 0.987 0.232 0.668 1e-134
356507349 888 PREDICTED: ribonuclease J-like [Glycine 0.982 0.432 0.605 1e-125
356516571 874 PREDICTED: ribonuclease J-like [Glycine 0.976 0.437 0.595 1e-122
449440566 909 PREDICTED: ribonuclease J-like [Cucumis 0.992 0.426 0.6 1e-121
449501401 909 PREDICTED: LOW QUALITY PROTEIN: ribonucl 0.992 0.426 0.597 1e-120
357463617 959 Ribonuclease J [Medicago truncatula] gi| 0.951 0.387 0.582 1e-119
147856240 1616 hypothetical protein VITISV_026006 [Viti 0.941 0.227 0.637 1e-119
>gi|224119634|ref|XP_002318122.1| predicted protein [Populus trichocarpa] gi|222858795|gb|EEE96342.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/400 (70%), Positives = 334/400 (83%), Gaps = 12/400 (3%)

Query: 1   MLGVSHLRNRRVLSNGFISLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSM 60
           MLGVSHLRNRRVLSNGF+SLGKENLQLMY+DGDKAFGTSTELC+DERL+IASDGI+VVSM
Sbjct: 494 MLGVSHLRNRRVLSNGFVSLGKENLQLMYNDGDKAFGTSTELCIDERLKIASDGIVVVSM 553

Query: 61  EILRPQHTDGQSGYSLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEK 120
           EILRPQ+ DGQ   SLKGKI+ITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPL H+E+
Sbjct: 554 EILRPQNLDGQVEKSLKGKIKITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLTHMER 613

Query: 121 TVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARLSGNSHVGFGMPALRKMVDRH 180
           TVSE+LRK+VRKYS KRPEVIA+A+ENPAAVLSDELN+RLSGNSHVGFG+ ALRK+VD H
Sbjct: 614 TVSEMLRKMVRKYSGKRPEVIAIAVENPAAVLSDELNSRLSGNSHVGFGISALRKIVDGH 673

Query: 181 PKISQLNKTQAEGDGRQ-------QNLQVDGIEVE-ELPEETTTTSSSDHGERLSLDSED 232
           PK +Q+++ Q +G+G         QNL+VDGIE E ELP+E  T+SS +  E  S  SED
Sbjct: 674 PKGNQVDRKQPDGNGYAHLEKTSPQNLEVDGIEFERELPKEEGTSSSPNLAEGHSSASED 733

Query: 233 SDEFWKSFVAPASPINSLVKGNNVLIPQEEQQMSELEEDGTEISDNDSLERSSSQPKPSK 292
            D+F KS V  +SP+N LVK +  L+P  E QM++L+ED  + SD+D LE  +S+ K SK
Sbjct: 734 QDDFQKSSVPSSSPVNELVKSDESLVPPGE-QMNKLKEDVMDSSDDDLLENENSRLKRSK 792

Query: 293 GVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWS 352
            V+RNKW+PEEVK LIKMRGELHS+FQVV+GRMALW+EIST+L  +G NR+P QCKS W+
Sbjct: 793 SVKRNKWKPEEVKSLIKMRGELHSRFQVVRGRMALWEEISTNLMADGINRSPGQCKSLWT 852

Query: 353 SLLQKYEESKSG-NSQKSWPYFEEMNKIFSDSDSEAMATK 391
           SL+QKYEESK+G   +K+WPYFE+M+ I   SDSE MATK
Sbjct: 853 SLVQKYEESKNGKKGKKAWPYFEDMDNIL--SDSETMATK 890

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540285|ref|XP_002511207.1| conserved hypothetical protein [Ricinus communis] gi|223550322|gb|EEF51809.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225456284|ref|XP_002279798.1| PREDICTED: ribonuclease J-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734394|emb|CBI15641.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507349|ref|XP_003522430.1| PREDICTED: ribonuclease J-like [Glycine max] Back     alignment and taxonomy information
>gi|356516571|ref|XP_003526967.1| PREDICTED: ribonuclease J-like [Glycine max] Back     alignment and taxonomy information
>gi|449440566|ref|XP_004138055.1| PREDICTED: ribonuclease J-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449501401|ref|XP_004161356.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease J-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357463617|ref|XP_003602090.1| Ribonuclease J [Medicago truncatula] gi|355491138|gb|AES72341.1| Ribonuclease J [Medicago truncatula] Back     alignment and taxonomy information
>gi|147856240|emb|CAN81787.1| hypothetical protein VITISV_026006 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
TAIR|locus:2167336911 emb2746 "embryo defective 2746 0.969 0.416 0.545 5.3e-104
TAIR|locus:2042847 289 AT2G38250 [Arabidopsis thalian 0.227 0.307 0.336 3.7e-10
TAIR|locus:2179192 323 AT5G01380 [Arabidopsis thalian 0.225 0.272 0.329 8.3e-09
TAIR|locus:2092130 372 AT3G25990 [Arabidopsis thalian 0.230 0.241 0.32 3.4e-08
TAIR|locus:2036267603 AT1G76880 [Arabidopsis thalian 0.237 0.154 0.295 4.9e-08
TAIR|locus:2009897 406 GT-1 "GT-1" [Arabidopsis thali 0.232 0.224 0.291 2.5e-07
TAIR|locus:2169013398 AT5G47660 [Arabidopsis thalian 0.406 0.399 0.254 4e-07
TAIR|locus:2036272575 GT2 [Arabidopsis thaliana (tax 0.235 0.16 0.285 1.3e-06
ZFIN|ZDB-GENE-050306-341111 zgc:113263 "zgc:113263" [Danio 0.322 0.113 0.274 3e-06
UNIPROTKB|E2RSU4 645 ZSCAN29 "Uncharacterized prote 0.309 0.187 0.261 5.3e-05
TAIR|locus:2167336 emb2746 "embryo defective 2746" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 216/396 (54%), Positives = 275/396 (69%)

Query:     1 MLGVSHLRNRRVLSNGFISLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSM 60
             MLGVSHLRNRRVLSNGF SLG+ENLQLMYSDGDKAFGTS+ELC+DERLRI+SDGIIV+SM
Sbjct:   523 MLGVSHLRNRRVLSNGFSSLGRENLQLMYSDGDKAFGTSSELCIDERLRISSDGIIVLSM 582

Query:    61 EILRPQHTDGQSGYSLKGKIRITTRCLWXXXXXXXXXXXXXXXXXXSSCPVNCPLAHVEK 120
             EI+RP    G S  +LKGKIRITTRC+W                  SSCPV CPL+H+E+
Sbjct:   583 EIMRP----GVSENTLKGKIRITTRCMWLDKGRLLDALHKAAHAALSSCPVTCPLSHMER 638

Query:   121 TVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARLSGNSHVGFGMPALRKMVDRH 180
             TVSEVLRK+VRKYS KRPEVIA+A ENP AV +DE++ARLSG+  VG G+ ALRK+V+ +
Sbjct:   639 TVSEVLRKIVRKYSGKRPEVIAIATENPMAVRADEVSARLSGDPSVGSGVAALRKVVEGN 698

Query:   181 PKISQLNKTQA-EGDGRQ--QNLQ---VDGIEVXXXXXXXXXXXXXDHGERLSLDSEDSD 234
              K S+  K  + E   ++  + L+   +D   +             +    +   SE+SD
Sbjct:   699 DKRSRAKKAPSQEASPKEVDRTLEDDIIDSARLLAEEETAASTYTEEVDTPVGSSSEESD 758

Query:   235 EFWKSFVAPAS-PINSLVKG-NNVLIPQEEQQMSELEEDGTEISDNDSLERSSSQPKPSK 292
             +FWKSF+ P+S P  S  +  N V   + + +  E   D  E++D    E  SS PK   
Sbjct:   759 DFWKSFINPSSSPSPSETENMNKVADTEPKAEGKENSRDDDELADASDSETKSS-PKR-- 815

Query:   293 GVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWS 352
              VR+NKW+PEE+KK+I+MRGELHS+FQVVKGRMALW+EIS++L+ EG NR+P QCKS W+
Sbjct:   816 -VRKNKWKPEEIKKVIRMRGELHSRFQVVKGRMALWEEISSNLSAEGINRSPGQCKSLWA 874

Query:   353 SLLQKYEESKSGNSQK-SWPYFEEMNKIFSDSDSEA 387
             SL+QKYEESK+    K SWP+FE+MN I S+  + A
Sbjct:   875 SLIQKYEESKADERSKTSWPHFEDMNNILSELGTPA 910
GO:0003677 "DNA binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=ISS
GO:0008152 "metabolic process" evidence=ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0016787 "hydrolase activity" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0015979 "photosynthesis" evidence=RCA
GO:0045333 "cellular respiration" evidence=RCA
TAIR|locus:2042847 AT2G38250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179192 AT5G01380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092130 AT3G25990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036267 AT1G76880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009897 GT-1 "GT-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169013 AT5G47660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036272 GT2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050306-34 zgc:113263 "zgc:113263" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSU4 ZSCAN29 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XII000939
hypothetical protein (890 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_scaffold_10565000001
Predicted protein (327 aa)
•       0.741
grail3.0035005702
dihydrodipicolinate synthase (EC-4.2.1.52) (363 aa)
•       0.478
gw1.XIX.1195.1
polyribonucleotide nucleotidyltransferase (730 aa)
•  •  • 0.428
rps15
30S ribosomal protein S15 (90 aa)
•     • 0.427
gw1.127.31.1
hypothetical protein (78 aa)
•     • 0.424
eugene3.22150003
annotation not avaliable (527 aa)
•       0.422
estExt_fgenesh4_pg.C_LG_II1351
dihydrodipicolinate synthase (EC-4.2.1.52) (366 aa)
•       0.416
eugene3.33070001
Predicted protein (149 aa)
•       0.415

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
cd1220366 cd12203, GT1, GT1, myb-like, SANT family 1e-21
pfam1383784 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi 1e-20
pfam1054584 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase tra 2e-06
smart0059589 smart00595, MADF, subfamily of SANT domain 2e-05
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 2e-05
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 1e-04
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 2e-04
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 8e-04
>gnl|CDD|213402 cd12203, GT1, GT1, myb-like, SANT family Back     alignment and domain information 
 Score = 87.0 bits (216), Expect = 1e-21
 Identities = 26/66 (39%), Positives = 42/66 (63%)

Query: 297 NKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQ 356
            +W  EE   LI++R E+ S+FQ  K + ALW+EI+  +   G+NR+  QCK +W +L +
Sbjct: 1   KRWPREETLSLIRLRREMESRFQETKSKKALWEEIAAKMRELGYNRSAKQCKEKWENLNK 60

Query: 357 KYEESK 362
            Y++ K
Sbjct: 61  YYKKVK 66

GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcrtiption pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resemble the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins. Length = 66
>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|220803 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase transcription factor Myb/SANT-like Back     alignment and domain information
>gnl|CDD|214738 smart00595, MADF, subfamily of SANT domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 391
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 99.86
KOG4282 345 consensus Transcription factor GT-2 and related pr 99.68
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 98.4
smart0059589 MADF subfamily of SANT domain. 98.38
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 98.14
PF1054585 MADF_DNA_bdg: Alcohol dehydrogenase transcription 98.03
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.66
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.43
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 97.37
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 97.19
COG0595555 mRNA degradation ribonucleases J1/J2 (metallo-beta 96.92
PLN03212 249 Transcription repressor MYB5; Provisional 96.04
PLN03091 459 hypothetical protein; Provisional 94.39
PLN03212249 Transcription repressor MYB5; Provisional 93.38
PLN03091 459 hypothetical protein; Provisional 93.28
KOG0051607 consensus RNA polymerase I termination factor, Myb 89.12
PF0450498 DUF573: Protein of unknown function, DUF573; Inter 85.89
KOG1279 506 consensus Chromatin remodeling factor subunit and 81.72
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information 
Probab=99.86  E-value=6.5e-22  Score=157.20  Aligned_cols=84  Identities=44%  Similarity=0.902  Sum_probs=57.9

Q ss_pred             CCCCCHHHHHHHHHHHHH--HHHhhhh--cccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc--CCCCCC
Q 016319          296 RNKWRPEEVKKLIKMRGE--LHSKFQV--VKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKS--GNSQKS  369 (391)
Q Consensus       296 ~~~WT~eETklLIeLw~E--~e~rF~~--~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiKd--G~~rks  369 (391)
                      +.+||++||.+||++|.+  ++..|..  ..++..+|+.||..|+++||.||+.||++||+||++.|+++++  ...+.+
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~~~~~   80 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDRNKKSGSS   80 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSSS----S
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            468999999999999999  5667864  5677789999999999999999999999999999999999988  233469


Q ss_pred             CcChHHHHHh
Q 016319          370 WPYFEEMNKI  379 (391)
Q Consensus       370 WpYFdeMDeI  379 (391)
                      |+||++||+|
T Consensus        81 w~~f~~md~i   90 (90)
T PF13837_consen   81 WPYFDEMDEI   90 (90)
T ss_dssp             ---TT-----
T ss_pred             CcCHHHHhcC
Confidence            9999999986

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>smart00595 MADF subfamily of SANT domain Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
2jmw_A86 Structure Of Dna-Binding Domain Of Arabidopsis Gt-1 6e-07
2ebi_A86 Arabidopsis Gt-1 Dna-Binding Domain With T133d Phos 9e-07
>pdb|2JMW|A Chain A, Structure Of Dna-Binding Domain Of Arabidopsis Gt-1 Length = 86 Back     alignment and structure 
Iteration: 1

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSL 354
           R   W  +E + LI  R  +   F   K    LW++IS+ +  +GF+R+P+ C  +W +L
Sbjct: 3   RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNL 62
Query: 355 LQKYEESKS---GNSQKSWPYFEE 375
           L++++++K    GN      Y++E
Sbjct: 63  LKEFKKAKHHDRGNGSAKMSYYKE 86
>pdb|2EBI|A Chain A, Arabidopsis Gt-1 Dna-Binding Domain With T133d Phosphomimetic Mutation Length = 86 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 3e-24
3bk2_A562 RNAse J, metal dependent hydrolase; endoribonuclea 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 1e-05
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 3e-05
3zq4_A555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 7e-05
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 8e-05
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 1e-04
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 4e-04
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 1e-04
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 2e-04
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 2e-04
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 3e-04
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 3e-04
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 5e-04
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 5e-04
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 7e-04
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 8e-04
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86 Back     alignment and structure
 Score = 94.5 bits (235), Expect = 3e-24
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSL 354
           R   W  +E + LI  R  +   F   K    LW++IS+ +  +GF+R+P  C  +W +L
Sbjct: 3   RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62

Query: 355 LQKY---EESKSGNSQKSWPYFEE 375
           L+++   +    GN      Y++E
Sbjct: 63  LKEFKKAKHHDRGNGSAKMSYYKE 86
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Length = 562 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Length = 555 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 99.88
3zq4_A555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 98.73
3bk2_A562 RNAse J, metal dependent hydrolase; endoribonuclea 98.43
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 97.99
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 97.95
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 97.81
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 97.51
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 97.45
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.41
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.35
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 97.32
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 97.27
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 97.2
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 97.18
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 97.15
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.13
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 97.12
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.1
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.07
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 97.0
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 96.98
2cjj_A93 Radialis; plant development, DNA-binding protein, 96.96
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.68
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.53
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.52
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.48
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 96.44
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.18
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.15
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 95.12
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 95.94
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 95.63
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 95.51
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 95.33
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 94.93
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 94.42
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 94.2
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 94.16
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 93.95
1ign_A 246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 92.94
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 91.38
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 90.76
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 88.77
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 87.95
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 86.17
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 81.65
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
Probab=99.88  E-value=3.8e-23  Score=165.62  Aligned_cols=82  Identities=30%  Similarity=0.765  Sum_probs=76.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc---CCCCCCC
Q 016319          294 VRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKS---GNSQKSW  370 (391)
Q Consensus       294 ~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiKd---G~~rksW  370 (391)
                      .|..+|+++||++||++|++++.+|..++++..+|++||..|.++||+||+.||+.||+||++.|+++|+   ..++.+|
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG~~~~   81 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNGSAKM   81 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCCCCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence            4789999999999999999999999988899999999999999999999999999999999999999998   3345699


Q ss_pred             cChHH
Q 016319          371 PYFEE  375 (391)
Q Consensus       371 pYFde  375 (391)
                      |||++
T Consensus        82 ~yf~e   86 (86)
T 2ebi_A           82 SYYKE   86 (86)
T ss_dssp             CCCCC
T ss_pred             CCCCc
Confidence            99975
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 391
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 1e-05
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 1e-05
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 2e-05
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 4e-05
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 6e-05
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 7e-05
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 1e-04
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 3e-04
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 3e-04
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 4e-04
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 0.002
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 0.003
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 0.003
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 298 KWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357
            W  +E K          + +   K     W  ++  +      RTP + K  +  L++ 
Sbjct: 3   PWSAKENKAFE----RALAVYD--KDTPDRWANVARAVEG----RTPEEVKKHYEILVED 52

Query: 358 YEESKSG 364
            +  +SG
Sbjct: 53  IKYIESG 59
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.95
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 97.83
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.7
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.59
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 97.55
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.22
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.22
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.2
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.11
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.91
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 96.81
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 96.75
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 96.15
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 95.03
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 94.17
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=97.95  E-value=1e-05  Score=59.71  Aligned_cols=59  Identities=20%  Similarity=0.439  Sum_probs=47.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 016319          296 RNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKSG  364 (391)
Q Consensus       296 ~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiKdG  364 (391)
                      +..||.+|-..|+++...    |.  ..+..-|..||..|.    .||+.||+.+|+.|....+.+..|
T Consensus         1 G~~WT~eEd~~L~~~v~~----~~--~~~~~~W~~Ia~~l~----gRt~~qc~~r~~~L~~dik~iesg   59 (63)
T d2cjja1           1 GRPWSAKENKAFERALAV----YD--KDTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIESG   59 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHH----SC--TTCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CcCCCHHHHHHHHHHHHH----HC--CCCchHHHHHHHHcC----CCCHHHHHHHHHHHHHHhhccccC
Confidence            468999999999998854    32  123357999999985    499999999999999988877644
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure