Citrus Sinensis ID: 016325

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MQCTQICRGNKMMSSTSRDDHRDDDDDLNGVYSQFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEADDEEDGAGGDSDHDDDDNHEPELKTEVAKLFGDEHGDLYEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQRELKNSKREDLVAKEEKLQKEEEMNLDVGGNKQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccHHHHccccccccccccccccccHHccHHHHHHccccHHcccccccccccccccHHHHHHHcccEEEccccccccccHEcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mqctqicrgnkmmsstsrddhrdddddlngVYSQFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFtkskidrdslglEVKELFKGHDDLIHKYNVFvrneaddeedgaggdsdhddddnhepeLKTEVAKLFGDEHGDLYEEFERYVAKCREQKHVIKSIqdldlskckqvspsywrlpeyywmplasnrseigdqvlndnlvcastgterssfkqRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDdqnqddeksskieieghlgisDLRCIERLYAEhgldvidnlhknpetALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQRELKNSKREDLVAKEEKLQKEEEmnldvggnkq
Flexible Loop (DISEMBL)
mqctqicrgnkmmsstsrddhrdddDDLNGVYSQFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELfkghddliHKYNVFVRNEADDEEDGAGGDSDHDDDDNHEPELKTEVAKLFGDEHGDLYEEFERYVAKCREQKHVIksiqdldlskckqVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCAstgterssfkqrrrtkqeevlfkcedDRFELDLLLGWMHSAAENVEKLMIKIDDqnqddeksskieieghlgisDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQRelknskredlvakeeklqkeeemnldvggnkq
Low Complexity Region (SEG)
MQCTQICRGNKMMSSTSrddhrdddddLNGVYSQFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRneaddeedgaggdsdhddddnhePELKTEVAKLFGDEHGDLYEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQRELKNSKREDLVAKEEKLQKEEEMNLDVGGNKQ
Disordered region (IsUnstruct)
****************************NGVYSQFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVR******************************AKLFGDEHGDLYEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCA******************EVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKI************IEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAK******************************************
Disordered Region (DISOPRED)
**********************************************AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEADD*********************KTEVAKLFGDEHGDLYEEFERYVAKCRE**H****IQDLDLSKCKQVSPSYWRLPEYY************DQVLNDNLVCASTG***********TKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKL********************GHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQR********************************
Disordered Region (DISEMBL)
***********************DDDDLNGVYSQFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEA*********************ELKTEVAKLFGDEHGDLYEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCAST***************EEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDD********SKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQRELKNSKREDLVAKEEKL***************
Disordered Region (DISPRO)
**********************************F*AFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEA********************PELKTE**K**********************QKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQRELKNSKREDLVAKEEKLQKEEE**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQCTQICRGNKMMSSTSRDDHRDDDDDLNGVYSQFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEADDEEDGAGGDSDHDDDDNHEPELKTEVAKLFGDEHGDLYEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWxxxxxxxxxxxxxxxxxxxxxDEKSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVIxxxxxxxxxxxxxxxxxxxxxWAHVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNLDVGGNKQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	391	2.2.26 [Sep-21-2011]
Q9SRH9	1372	Paired amphipathic helix	yes	no	0.831	0.236	0.369	3e-48
O04539	1326	Paired amphipathic helix	no	no	0.503	0.148	0.5	1e-47
O48686	1330	Paired amphipathic helix	no	no	0.468	0.137	0.513	2e-45
Q9LFQ3	1367	Paired amphipathic helix	no	no	0.864	0.247	0.369	3e-45
Q9XIE1	1162	Paired amphipathic helix	no	no	0.521	0.175	0.471	3e-44
Q9XIK6	1173	Paired amphipathic helix	no	no	0.777	0.259	0.344	7e-44
Q62141	1098	Paired amphipathic helix	yes	no	0.439	0.156	0.356	2e-24
Q60520	1274	Paired amphipathic helix	no	no	0.432	0.132	0.331	1e-23
Q96ST3	1273	Paired amphipathic helix	yes	no	0.432	0.132	0.331	1e-23
O75182	1162	Paired amphipathic helix	no	no	0.537	0.180	0.276	2e-19

>sp|Q9SRH9|SNL1_ARATH Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana GN=SNL1 PE=1 SV=2

 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 200/371 (53%), Gaps = 46/371 (12%)

Query: 40  LADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDD 99
           L  +   A  F ++++ R   Q D  +  F + L+ F+   I R  L   V +L     D
Sbjct: 331 LKSMYKQAFVFCEKVKDRLCSQDD--YQTFLKCLNIFSNGIIQRKDLQNLVSDLLGKFPD 388

Query: 100 LIHKYNVFV-RNEA-----------------DDEEDGAGGDSDHDDDDNHEPELKTEVAK 141
           L+ ++N F  R E+                   EE  +      + +  H+PEL      
Sbjct: 389 LMDEFNQFFERCESITDGFQRLAGVMSKKLFSSEEQLSRPMKVEEKESEHKPEL------ 442

Query: 142 LFGDEHGDLYEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNR 201
                      E  +   +C+++ ++ KSIQ+LDLS C+  +PSY  LP  Y +P+AS R
Sbjct: 443 -----------EAVKETEQCKKE-YMGKSIQELDLSDCECCTPSYRLLPADYPIPIASQR 490

Query: 202 SEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENV 261
           SE+G +VLND+ V  ++G+E  SFK  RR + EE LF+CEDDRFELD+LL  + SAA + 
Sbjct: 491 SELGAEVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAARSA 550

Query: 262 EKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVI 321
           E L+  I ++      S    IE H    +LRCIERLY +HGLDVID L+KNP TALPVI
Sbjct: 551 ESLLNIITEKKIS--FSGSFRIEDHFTALNLRCIERLYGDHGLDVIDILNKNPATALPVI 608

Query: 322 LKSLKQKVEELVERRSDCNKIWAHVCAKNHDK------LQEMQRELKNSKREDLVAKEEK 375
           L  LKQK  E  + R D +K+WA+V AKNH K          Q++ KN   + L+A+ ++
Sbjct: 609 LTRLKQKQGEWKKCRDDFDKVWANVYAKNHYKSLDHRSFYFKQQDSKNLSAKSLLAEIKE 668

Query: 376 LQKEEEMNLDV 386
           L+++ + + DV
Sbjct: 669 LKEKSQNDDDV 679

Acts as a transcriptional repressor. An histone deacetylase (HDAC) activity is required for transcription repression. May play a role in telomere stability.
Arabidopsis thaliana (taxid: 3702)

>sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=3 SV=3

 Score =  191 bits (484), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/210 (50%), Positives = 140/210 (66%), Gaps = 13/210 (6%)

Query: 152 EEFERYVAKCREQKHV---------IKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRS 202
           E+ ERY  + RE++ +          K I +LDLS C+Q +PSY RLP+ Y +P+AS + 
Sbjct: 405 EKIERYRERDREKERLEKVAASQKWAKPISELDLSNCEQCTPSYRRLPKNYPIPIASQKM 464

Query: 203 EIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVE 262
           EIG QVLND+ V  ++G+E  SFK  R+ + EE LFKCEDDRFELD+LL  + SA   VE
Sbjct: 465 EIGSQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFKCEDDRFELDMLLESVISATNRVE 524

Query: 263 KLMIKIDDQNQDDEKS-SKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVI 321
           +L+ KI   N ++ K+ + I IE HL   +LRCIERLY++HGLDV+D L KN   ALPVI
Sbjct: 525 ELLAKI---NSNELKTDTPICIEDHLTALNLRCIERLYSDHGLDVLDLLKKNAYLALPVI 581

Query: 322 LKSLKQKVEELVERRSDCNKIWAHVCAKNH 351
           L  LKQK EE    R++ NK+WA +  KN+
Sbjct: 582 LTRLKQKQEEWARCRTEFNKVWADIYTKNY 611

Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability.

Arabidopsis thaliana (taxid: 3702)

>sp|O48686|SNL3_ARATH Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana GN=SNL3 PE=1 SV=3

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/185 (51%), Positives = 129/185 (69%), Gaps = 2/185 (1%)

Query: 169 KSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQR 228
           K I +LDLS C+Q +PSY  LP+ Y + +AS ++EIG  VLND+ V  ++G+E  SF   
Sbjct: 417 KPISELDLSNCEQCTPSYRLLPKNYPISIASQKTEIGKLVLNDHWVSVTSGSEDYSFSHM 476

Query: 229 RRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG 288
           R+ + EE LFKCEDDRFELD+LL  ++S  ++VE+L+ KI+  + + + +S I +E HL 
Sbjct: 477 RKNQYEESLFKCEDDRFELDMLLESVNSTTKHVEELLTKIN--SNELKTNSPIRVEDHLT 534

Query: 289 ISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
             +LRCIERLY +HGLDV+D L KN   ALPVIL  LKQK EE    RSD +K+WA + A
Sbjct: 535 ALNLRCIERLYGDHGLDVMDVLKKNVSLALPVILTRLKQKQEEWARCRSDFDKVWAEIYA 594

Query: 349 KNHDK 353
           KN+ K
Sbjct: 595 KNYYK 599

Acts as a transcriptional repressor. Interacts with ERF7 to repress genes in abscisic acid and drought stress responses. The heterodimer represses transcription by tethering SNL3 to DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/365 (36%), Positives = 196/365 (53%), Gaps = 27/365 (7%)

Query: 40  LADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDD 99
           L  +   A  F +++++R   Q D  +  F + L+ F+   I R  L   V ++     D
Sbjct: 327 LKSMYNQAFLFCEKVKERLCSQDD--YQAFLKCLNMFSNGIIQRKDLQNLVSDVLGKFPD 384

Query: 100 LIHKYNVFV-RNEADDEEDGAGGDSDHDDDDNHEPELKTEVAKLFGDEHGDLYEEFERYV 158
           L+ ++N F  R E+ D      G        + E      +++    E  D   E +R V
Sbjct: 385 LMDEFNQFFERCESIDGFQHLAGVMSKKSLGSEE-----NLSRSVKGEEKD--REHKRDV 437

Query: 159 AKCREQ-----KHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNL 213
              +E+     K++ KSIQ+LDLS C++ +PSY  LP  Y +P   +R + G  VLND+ 
Sbjct: 438 EAAKEKERSKDKYMGKSIQELDLSDCERCTPSYRLLPPDYPIPSVRHRQKSGAAVLNDHW 497

Query: 214 VCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQ 273
           V  ++G+E  SFK  RR + EE LF+CEDDRFELD+LL  + SAA++ E+L+  I D+  
Sbjct: 498 VSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVGSAAKSAEELLNIIIDKKI 557

Query: 274 DDEKSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELV 333
             E S    IE H    +LRCIERLY +HGLDV D + KNP  ALPVIL  LKQK +E  
Sbjct: 558 SFEGS--FRIEDHFTALNLRCIERLYGDHGLDVTDLIRKNPAAALPVILTRLKQKQDEWT 615

Query: 334 ERRSDCNKIWAHVCAKNHDK------LQEMQRELKNSKREDLVAK----EEKLQKEEEMN 383
           + R   N +WA V AKNH K          Q++ KN   + LV++    +EK QKE+++ 
Sbjct: 616 KCREGFNVVWADVYAKNHYKSLDHRSFYFKQQDSKNLSAKALVSEVKDLKEKSQKEDDVV 675

Query: 384 LDVGG 388
           L +  
Sbjct: 676 LSISA 680

Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIE1|SNL5_ARATH Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana GN=SNL5 PE=2 SV=3

 Score =  179 bits (455), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 100/212 (47%), Positives = 136/212 (64%), Gaps = 8/212 (3%)

Query: 166 HVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSF 225
           H+ K+I +LDL+ C Q +PSY RLP+ Y + + S R+ +G++VLND+ V  ++G+E  SF
Sbjct: 303 HMAKAINELDLTDCAQCTPSYRRLPDDYPIQIPSYRNSLGEKVLNDHWVSVTSGSEDYSF 362

Query: 226 KQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEG 285
           K  R+ + EE LF+CEDDRFELD+LL  + +A + VE L+ KI++     E  + I I  
Sbjct: 363 KHMRKNQYEESLFRCEDDRFELDMLLESVSAAIKRVESLLEKINNNTISIE--TPICIRE 420

Query: 286 HLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAH 345
           HL   +LRCIERLY ++GLDV+D L KN   ALPVIL  LKQK EE    R+D  K+WA 
Sbjct: 421 HLSELNLRCIERLYGDYGLDVMDFLKKNSHIALPVILTRLKQKQEEWARCRADFRKVWAE 480

Query: 346 VCAKNHDK------LQEMQRELKNSKREDLVA 371
           V AKNH K          Q++ KN   + LVA
Sbjct: 481 VYAKNHHKSLDHRSFYFKQQDSKNLSTKGLVA 512

Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIK6|SNL6_ARATH Paired amphipathic helix protein Sin3-like 6 OS=Arabidopsis thaliana GN=SNL6 PE=3 SV=2

 Score =  178 bits (451), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 175/357 (49%), Gaps = 53/357 (14%)

Query: 47  AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
           A+ F+ +++ RF       + RF  +L+ + K K     +  EV  LFKGH+DL+ ++  
Sbjct: 169 AIGFVTKIKTRFGDDEHA-YKRFLDILNLYRKEKKSISEVYEEVTMLFKGHEDLLMEFVN 227

Query: 107 FVRN---------EADDEEDGAGGDSDHDD-------------------DDNHEPELKTE 138
           F+ N          A     G    + H D                   +D  E  +   
Sbjct: 228 FLPNCPESAPSTKNAVPRHKGTATTAMHSDKKRKQRCKLEDYSGHSDQREDGDENLVTCS 287

Query: 139 VAKLFGDEHGDLYEEFERYV-----AKCREQKHVIKSIQD-----------------LDL 176
                G+     + ++E           R +K      QD                 LDL
Sbjct: 288 ADSPVGEGQPGYFRDYENREDTETDTADRTEKSAASGSQDIGNHKSTTKYVGTPINELDL 347

Query: 177 SKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEV 236
           S+C Q +PSY  LP+ Y + + S R+ +G + LND+LV  ++G+E  SF   R+ + EE 
Sbjct: 348 SECTQCTPSYRLLPKDYAVEIPSYRNTLGKKTLNDHLVSVTSGSEDYSFSHMRKNQYEES 407

Query: 237 LFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIE 296
           LF+CEDDR+E+D+LLG + SA + VE L+ K++  N      S I IE HL   +LRCIE
Sbjct: 408 LFRCEDDRYEMDMLLGSVSSAIKQVEILLEKMN--NNTISVDSTICIEKHLSAMNLRCIE 465

Query: 297 RLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDK 353
           RLY ++GLDV+D L KN  +ALPVIL  LKQK EE     SD  K+WA V AKNH K
Sbjct: 466 RLYGDNGLDVMDLLKKNMHSALPVILTRLKQKQEEWARCHSDFQKVWAEVYAKNHHK 522

Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability.

Arabidopsis thaliana (taxid: 3702)

>sp|Q62141|SIN3B_MOUSE Paired amphipathic helix protein Sin3b OS=Mus musculus GN=Sin3b PE=1 SV=2

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 2/174 (1%)

Query: 172 QDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRT 231
           +++D + CK++  SY  LP+ Y  P  S R+ I  +VLND  V   + +E S+F   ++T
Sbjct: 378 REIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKT 437

Query: 232 KQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIE--IEGHLGI 289
             EE L +CED+RFELD++L    +    +E +  K+     +D++  +++  + G   +
Sbjct: 438 PYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKLRLDDCLGGTSEV 497

Query: 290 SDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIW 343
              R I R+Y +   +VI++L +NP TA+PV+LK LK K EE  E +   NKIW
Sbjct: 498 IQRRAIHRIYGDKAPEVIESLKRNPATAVPVVLKRLKAKEEEWREAQQGFNKIW 551

Acts as a transcriptional repressor. Interacts with MXI1 to repress MYC responsive genes and antagonize MYC oncogenic activities. Interacts with MAD-MAX heterodimers by binding to MAD. The heterodimer then represses transcription by tethering SIN3B to DNA. Also forms a complex with FOXK1 which represses transcription.

Mus musculus (taxid: 10090)

>sp|Q60520|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a PE=1 SV=3

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 103/175 (58%), Gaps = 6/175 (3%)

Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
           ++D + CK++  SY  LP+ Y  P  + R+ +  +VLND  V   + +E S+F   ++T+
Sbjct: 546 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 605

Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG---- 288
            EE +++CED+RFELD++L    +    +E +  K+   + +++  +K  ++  LG    
Sbjct: 606 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 663

Query: 289 ISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIW 343
           +   + ++R+YA+   D+ID L KNP  A+P++LK LK K EE  E +   NK+W
Sbjct: 664 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVW 718

Acts as a transcriptional repressor. Corepressor for REST. Interacts with MXI1 to repress MYC responsive genes and antagonize MYC oncogenic activities. Also interacts with MXD1-MAX heterodimers to repress transcription by tethering SIN3A to DNA. Acts cooperatively with OGT to repress transcription in parallel with histone deacetylation.

Mus musculus (taxid: 10090)

>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1 SV=2

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 103/175 (58%), Gaps = 6/175 (3%)

Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
           ++D + CK++  SY  LP+ Y  P  + R+ +  +VLND  V   + +E S+F   ++T+
Sbjct: 545 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 604

Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG---- 288
            EE +++CED+RFELD++L    +    +E +  K+   + +++  +K  ++  LG    
Sbjct: 605 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 662

Query: 289 ISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIW 343
           +   + ++R+YA+   D+ID L KNP  A+P++LK LK K EE  E +   NK+W
Sbjct: 663 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVW 717

Acts as a transcriptional repressor. Corepressor for REST. Interacts with MXI1 to repress MYC responsive genes and antagonize MYC oncogenic activities. Also interacts with MXD1-MAX heterodimers to repress transcription by tethering SIN3A to DNA (By similarity). Acts cooperatively with OGT to repress transcription in parallel with histone deacetylation.

Homo sapiens (taxid: 9606)

>sp|O75182|SIN3B_HUMAN Paired amphipathic helix protein Sin3b OS=Homo sapiens GN=SIN3B PE=1 SV=2

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 40/250 (16%)

Query: 172 QDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQ------------------------ 207
           +++D + CK++  SY  LP+ Y  P  S R+ I  +                        
Sbjct: 387 REIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKELDHWTLLQGSWTDDYCMSKFKNTC 446

Query: 208 --------VLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAE 259
                   VLND  V   + +E S+F   ++T  EE L +CED+RFELD++L    +   
Sbjct: 447 WIPGYSAGVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIR 506

Query: 260 NVEKLMIKIDDQNQDDEKSSKIE--IEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETA 317
            +E +  K+     +D++  +++  + G   +   R I R+Y +   ++I++L KNP TA
Sbjct: 507 VLESVQKKLSRMAPEDQEKFRLDDSLGGTSEVIQRRAIYRIYGDKAPEIIESLKKNPVTA 566

Query: 318 LPVILKSLKQKVEELVERRSDCNKIW------AHVCAKNHDKLQEMQRELKNSKREDLVA 371
           +PV+LK LK K EE  E +   NKIW      A++ + +H  +   Q + K  + + L+ 
Sbjct: 567 VPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSLLN 626

Query: 372 KEEKLQKEEE 381
           + E +  E +
Sbjct: 627 EIESVYDEHQ 636

Acts as a transcriptional repressor. Interacts with MXI1 to repress MYC responsive genes and antagonize MYC oncogenic activities. Interacts with MAD-MAX heterodimers by binding to MAD. The heterodimer then represses transcription by tethering SIN3B to DNA. Also forms a complex with FOXK1 which represses transcription.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
255552758	1289	conserved hypothetical protein [Ricinus	0.884	0.268	0.376	1e-51
356573426	1383	PREDICTED: paired amphipathic helix prot	0.867	0.245	0.397	4e-51
356550937	1371	PREDICTED: paired amphipathic helix prot	0.872	0.248	0.394	6e-51
359488765	1395	PREDICTED: paired amphipathic helix prot	0.578	0.162	0.495	5e-50
296087759	1359	unnamed protein product [Vitis vinifera]	0.578	0.166	0.495	5e-50
357496209	1404	Paired amphipathic helix protein Sin3 [M	0.879	0.245	0.390	5e-50
218187368	1360	hypothetical protein OsI_00086 [Oryza sa	0.956	0.275	0.348	2e-47
115434074	1326	Os01g0109700 [Oryza sativa Japonica Grou	0.956	0.282	0.348	2e-47
297832804	1378	hypothetical protein ARALYDRAFT_477381 [	0.869	0.246	0.383	2e-47
215768290	1325	unnamed protein product [Oryza sativa Ja	0.956	0.282	0.348	2e-47

>gi|255552758|ref|XP_002517422.1| conserved hypothetical protein [Ricinus communis] gi|223543433|gb|EEF44964.1| conserved hypothetical protein [Ricinus communis]

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 144/382 (37%), Positives = 211/382 (55%), Gaps = 36/382 (9%)

Query: 23  DDDDDLNGVYSQFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKID 82
           DD D+L  VY+Q               F ++++++     D  +  F + L+ ++   I 
Sbjct: 267 DDKDNLKSVYNQ------------GFIFCEKVKEKLGSSDD--YQAFLKCLNIYSNGIIK 312

Query: 83  RDSLGLEVKELFKGHDDLIHKYNVFV--RNEADDEEDGAGGDSDHDDDDNHEPELKTEVA 140
           ++ L   V +L   + DL+ ++N F   R   D    G         D +    LK E  
Sbjct: 313 KNDLQNLVADLLGKYPDLMEEFNDFFERRENIDGFLAGVMSKKSLGSDGHASRSLKVEDK 372

Query: 141 KLFGDEHGDLYEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASN 200
                   D+ +E ERY      +K++ KSIQ+LDLS C++ +PSY  LP+ Y +P AS 
Sbjct: 373 DKEQKRELDVAKEKERY-----REKYMAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQ 427

Query: 201 RSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAEN 260
           RSE+G QVLND+ V  ++G+E  SFK  RR + EE LF+CEDDRFELD+LL  + S A+ 
Sbjct: 428 RSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVTSTAKR 487

Query: 261 VEKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPV 320
            E+L+  I+    +++  + I I+ H    +LRCIERLY +HGLDV+D L KNP  ALPV
Sbjct: 488 AEELLNSIN----ENKIEAPINIDDHFTALNLRCIERLYGDHGLDVMDILRKNPTLALPV 543

Query: 321 ILKSLKQKVEELVERRSDCNKIWAHVCAKNHDK------LQEMQRELKNSKREDLVAK-- 372
           IL  LKQK EE +  R+D NK+WA + +KNH K          Q++ KN     LV++  
Sbjct: 544 ILTRLKQKQEEWMRCRADFNKVWAEIYSKNHYKSLDHRSFYFKQQDSKNLSTRSLVSEIK 603

Query: 373 --EEKLQKEEEMNLD-VGGNKQ 391
             +EK QKE+++ L    GN+Q
Sbjct: 604 ELKEKQQKEDDILLAFAAGNRQ 625

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573426|ref|XP_003554862.1| PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Glycine max]

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 150/377 (39%), Positives = 212/377 (56%), Gaps = 38/377 (10%)

Query: 30  GVYSQFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLE 89
           G+YSQ            A +F ++++ +     D  +  F + L  F+   I R+ L   
Sbjct: 330 GMYSQ------------AFSFCEKVKGKLSSSDD--YQTFLKCLHIFSNGIIKRNDLQNL 375

Query: 90  VKELFKGHDDLIHKYNVFVRNEADDEEDG--AGGDSDHDDDDNHEPELKTEVAKLFGDEH 147
           V +L   H DL+ ++N F+  E  +  DG  AG  S      +      +++ +   +  
Sbjct: 376 VTDLLGKHSDLMDEFNDFL--ERCENIDGFLAGVMSKKSLSTDAHLSRSSKLEEKDKEHK 433

Query: 148 GDL--YEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIG 205
            DL   +E ERY      +K++ KSIQ+LDLS CK+ +PSY  LP  Y +P AS RSE+G
Sbjct: 434 RDLDGAKEKERY-----REKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELG 488

Query: 206 DQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLM 265
            QVLND+ V  ++G+E  SFK  RR + EE LF+CEDDR+ELD+LL  + SAA+  E+L 
Sbjct: 489 AQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKKAEELY 548

Query: 266 IKIDDQNQDDEKSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSL 325
             I++     E  ++  IE H  + +LRCIERLY +HGLDVID L KNP  ALPVIL  L
Sbjct: 549 NSINENKISVETLNR--IEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRL 606

Query: 326 KQKVEELVERRSDCNKIWAHVCAKNHDK------LQEMQRELKNSKREDLVAK----EEK 375
           KQK EE  + RSD NK+WA + AKNH K          Q++ KN   + LV +    +EK
Sbjct: 607 KQKQEEWSKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEK 666

Query: 376 LQKEEEMNLDV-GGNKQ 391
            QKE+++   +  GNKQ
Sbjct: 667 QQKEDDIIQSIAAGNKQ 683

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550937|ref|XP_003543838.1| PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Glycine max]

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 148/375 (39%), Positives = 205/375 (54%), Gaps = 34/375 (9%)

Query: 30  GVYSQFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLE 89
           G+YSQ            A +F ++++++     D  +  F + L  F+   I R+ L   
Sbjct: 324 GMYSQ------------AFSFCEKVKEKLSSSDD--YQTFLKCLHIFSNGIIKRNDLQNL 369

Query: 90  VKELFKGHDDLIHKYNVFVRN--EADDEEDGAGGDSDHDDDDNHEPELKTEVAKLFGDEH 147
           V +L   H DL+ ++N F+      D    G         D +     K E         
Sbjct: 370 VTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLSRSSKLEDKDKEHKRD 429

Query: 148 GDLYEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQ 207
            D  +E ERY      +K++ KSIQ+LDLS CK+ +PSY  LP  Y +P AS RSE+G Q
Sbjct: 430 MDGAKEKERY-----REKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQ 484

Query: 208 VLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIK 267
           VLND+ V  ++G+E  SFK  RR + EE LF+CEDDR+ELD+LL  + SAA+  E+L   
Sbjct: 485 VLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKKAEELYNN 544

Query: 268 IDDQNQDDEKSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQ 327
           I++     E  ++  IE H  + +LRCIERLY +HGLDVID L KNP  ALPVIL  LKQ
Sbjct: 545 INENKIGMETLNR--IEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQ 602

Query: 328 KVEELVERRSDCNKIWAHVCAKNHDK------LQEMQRELKNSKREDLVAK----EEKLQ 377
           K EE  + RSD NK+WA + AKNH K          Q++ KN   + LV +    +EK Q
Sbjct: 603 KQEEWSKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQ 662

Query: 378 KEEEMNLDV-GGNKQ 391
           KE+++   +  GNKQ
Sbjct: 663 KEDDIIQSIAAGNKQ 677

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488765|ref|XP_002281791.2| PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Vitis vinifera]

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 121/244 (49%), Positives = 158/244 (64%), Gaps = 18/244 (7%)

Query: 160 KCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTG 219
           +CRE K++ KSIQ+LDLS C++ +PSY  LPE Y + +A  RSE+G QVLND  V  ++G
Sbjct: 456 RCRE-KYMGKSIQELDLSNCERCTPSYRLLPEDYPIAIAKERSELGAQVLNDQWVSVTSG 514

Query: 220 TERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSS 279
           +E  SFK  RR + EE LF+CEDDRFELD+LL  + SAA++ E L+  I     D+   S
Sbjct: 515 SEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVTSAAKHAEDLLNSI----SDNSVGS 570

Query: 280 KIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDC 339
            I+IEGHL + +LRCI+RLY +H LD +D L KN   ALPVIL  LKQK EE    RSD 
Sbjct: 571 PIQIEGHLTVLNLRCIDRLYGDHALDALDTLRKNTSLALPVILSRLKQKHEEWSRCRSDF 630

Query: 340 NKIWAHVCAKNHDK------LQEMQRELKNSKREDLVA-----KEEKLQKEEEMNLDV-G 387
           NK+WA + AKNH K          Q++ KN   + LVA     KEEK Q E++M L +  
Sbjct: 631 NKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKELKEEK-QNEDDMLLAIAA 689

Query: 388 GNKQ 391
           GN++
Sbjct: 690 GNRR 693

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087759|emb|CBI35015.3| unnamed protein product [Vitis vinifera]

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 121/244 (49%), Positives = 158/244 (64%), Gaps = 18/244 (7%)

Query: 160 KCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTG 219
           +CRE K++ KSIQ+LDLS C++ +PSY  LPE Y + +A  RSE+G QVLND  V  ++G
Sbjct: 456 RCRE-KYMGKSIQELDLSNCERCTPSYRLLPEDYPIAIAKERSELGAQVLNDQWVSVTSG 514

Query: 220 TERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSS 279
           +E  SFK  RR + EE LF+CEDDRFELD+LL  + SAA++ E L+  I     D+   S
Sbjct: 515 SEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVTSAAKHAEDLLNSI----SDNSVGS 570

Query: 280 KIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDC 339
            I+IEGHL + +LRCI+RLY +H LD +D L KN   ALPVIL  LKQK EE    RSD 
Sbjct: 571 PIQIEGHLTVLNLRCIDRLYGDHALDALDTLRKNTSLALPVILSRLKQKHEEWSRCRSDF 630

Query: 340 NKIWAHVCAKNHDK------LQEMQRELKNSKREDLVA-----KEEKLQKEEEMNLDV-G 387
           NK+WA + AKNH K          Q++ KN   + LVA     KEEK Q E++M L +  
Sbjct: 631 NKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKELKEEK-QNEDDMLLAIAA 689

Query: 388 GNKQ 391
           GN++
Sbjct: 690 GNRR 693

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496209|ref|XP_003618393.1| Paired amphipathic helix protein Sin3 [Medicago truncatula] gi|355493408|gb|AES74611.1| Paired amphipathic helix protein Sin3 [Medicago truncatula]

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 148/379 (39%), Positives = 211/379 (55%), Gaps = 35/379 (9%)

Query: 26  DDLNGVYSQFRAFAL--------ADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFT 77
           DD +G+  +   +AL        A +   A++F  +++++     D  +  F + L+ F 
Sbjct: 334 DDKDGMKRKISYYALDYYIAWIRAVMYSQAISFCDKVKEKLSSAED--YQTFLKCLNIFG 391

Query: 78  KSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEADDEEDGAGGDSDHD-DDDNHEPELK 136
              I ++ L   V +L   H DL+ ++N F+    + +   AG  S      D H     
Sbjct: 392 NGIIKKNDLQNLVTDLLGKHSDLMSEFNDFLERCENIDGFLAGVMSKKPLAGDGH----L 447

Query: 137 TEVAKLFGDEH---GDLYEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYY 193
           +  +KL   EH    D  +E ERY     ++K++ KSIQ+LDLS CK+ SPSY  LP  Y
Sbjct: 448 SRSSKLEDKEHRRETDGGKEKERY-----KEKYMGKSIQELDLSDCKRCSPSYRLLPADY 502

Query: 194 WMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGW 253
            +P AS RSE+G  VLND+ V  ++G+E  SFK  RR + EE LF+CEDDRFELD+LL  
Sbjct: 503 PIPTASQRSELGAHVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLES 562

Query: 254 MHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKN 313
           + SAA+  ++L   I +     E  S+  IE H  + +LRCIERLY +HGLDV+D L KN
Sbjct: 563 VSSAAKRADELYNSIVENKISVESLSR--IEDHFTVLNLRCIERLYGDHGLDVLDILRKN 620

Query: 314 PETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDK------LQEMQRELKNSKRE 367
           P  ALPVIL  LKQK EE    RSD NK+WA + +KNH K          Q++ KN   +
Sbjct: 621 PTHALPVILTRLKQKQEEWNRCRSDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTK 680

Query: 368 DLVAK----EEKLQKEEEM 382
            LV +    +EK QKE+++
Sbjct: 681 SLVTEIKEIKEKQQKEDDI 699

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218187368|gb|EEC69795.1| hypothetical protein OsI_00086 [Oryza sativa Indica Group]

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/405 (34%), Positives = 219/405 (54%), Gaps = 31/405 (7%)

Query: 11  KMMSSTSRDDHRDDDDDLNGVYSQFRAF-----ALADLRGAAVAFLKEMRKRFRKQHDGI 65
           KM   TS D H     + +G+     +      AL  +      F ++++++   +HD  
Sbjct: 244 KMEDPTSADAHHGGPLENHGILGASASLYDNKDALKSVYTQEFHFCEKVKEKL--EHDA- 300

Query: 66  FVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEADDEEDGAGGDSDH 125
           +  F + L  +++  I R  L   V ++ + H DL+  +N F+ +  + +   AG  S  
Sbjct: 301 YQEFLKCLHIYSQEIITRSELKNLVNDILQQHPDLMDGFNEFLEHCENIDGFLAGVFSKR 360

Query: 126 DDDDNHEPELKTEVAKLFGDE-HGDLYEEFERY-------VAKCREQKHVIKSIQDLDLS 177
                 + E + E  K  G E   D  E+   Y            ++K++ K + +LDLS
Sbjct: 361 QTGRIVKTEERKEGGK--GTEKEPDRIEKVPAYKEAPSQKPVFSSKEKYIYKPVSELDLS 418

Query: 178 KCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVL 237
            C++ +PSY  LP++Y MP A N++E+G  VLND+ V  ++G+E  SFK  R+ + EE L
Sbjct: 419 NCQRCTPSYRLLPKHYPMPPAGNKTELGASVLNDHWVSVTSGSEDYSFKHMRKNQYEESL 478

Query: 238 FKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIER 297
           F+CEDDRFELD+LL  +++A + VE+L+ K+ D +   +  S I I+ HL   +LRCIER
Sbjct: 479 FRCEDDRFELDMLLESVNAATKRVEELIEKMQDNSLKPD--SPIRIDEHLTPLNLRCIER 536

Query: 298 LYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKN------H 351
           LY +HGLDV+D L KN   ALPVIL  LKQK EE    RSD NK+WA + AKN      H
Sbjct: 537 LYGDHGLDVMDVLRKNASVALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNYHKSLDH 596

Query: 352 DKLQEMQRELKNSKREDLVAK----EEKLQKEEEMNLDV-GGNKQ 391
                 Q++ KN   + L+ +     EK +KE+++ L +  GN++
Sbjct: 597 RSFYFKQQDTKNLSTKSLLTEIKEINEKKRKEDDVLLAIAAGNRR 641

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115434074|ref|NP_001041795.1| Os01g0109700 [Oryza sativa Japonica Group] gi|113531326|dbj|BAF03709.1| Os01g0109700, partial [Oryza sativa Japonica Group]

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/405 (34%), Positives = 219/405 (54%), Gaps = 31/405 (7%)

Query: 11  KMMSSTSRDDHRDDDDDLNGVYSQFRAF-----ALADLRGAAVAFLKEMRKRFRKQHDGI 65
           KM   TS D H     + +G+     +      AL  +      F ++++++   +HD  
Sbjct: 210 KMEDPTSADAHHGGPLENHGILGASASLYDNKDALKSVYTQEFHFCEKVKEKL--EHDA- 266

Query: 66  FVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEADDEEDGAGGDSDH 125
           +  F + L  +++  I R  L   V ++ + H DL+  +N F+ +  + +   AG  S  
Sbjct: 267 YQEFLKCLHIYSQEIITRSELKNLVNDILQQHPDLMDGFNEFLEHCENIDGFLAGVFSKR 326

Query: 126 DDDDNHEPELKTEVAKLFGDE-HGDLYEEFERY-------VAKCREQKHVIKSIQDLDLS 177
                 + E + E  K  G E   D  E+   Y            ++K++ K + +LDLS
Sbjct: 327 QTGRIVKTEERKEGGK--GTEKEPDRIEKVPAYKEAPSQKPVFSSKEKYIYKPVSELDLS 384

Query: 178 KCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVL 237
            C++ +PSY  LP++Y MP A N++E+G  VLND+ V  ++G+E  SFK  R+ + EE L
Sbjct: 385 NCQRCTPSYRLLPKHYPMPPAGNKTELGASVLNDHWVSVTSGSEDYSFKHMRKNQYEESL 444

Query: 238 FKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIER 297
           F+CEDDRFELD+LL  +++A + VE+L+ K+ D +   +  S I I+ HL   +LRCIER
Sbjct: 445 FRCEDDRFELDMLLESVNAATKRVEELIEKMQDNSLKPD--SPIRIDEHLTPLNLRCIER 502

Query: 298 LYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKN------H 351
           LY +HGLDV+D L KN   ALPVIL  LKQK EE    RSD NK+WA + AKN      H
Sbjct: 503 LYGDHGLDVMDVLRKNASVALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNYHKSLDH 562

Query: 352 DKLQEMQRELKNSKREDLVAK----EEKLQKEEEMNLDV-GGNKQ 391
                 Q++ KN   + L+ +     EK +KE+++ L +  GN++
Sbjct: 563 RSFYFKQQDTKNLSTKSLLTEIKEINEKKRKEDDVLLAIAAGNRR 607

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832804|ref|XP_002884284.1| hypothetical protein ARALYDRAFT_477381 [Arabidopsis lyrata subsp. lyrata] gi|297330124|gb|EFH60543.1| hypothetical protein ARALYDRAFT_477381 [Arabidopsis lyrata subsp. lyrata]

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 201/362 (55%), Gaps = 22/362 (6%)

Query: 40  LADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDD 99
           L  +   A  F +++++R   Q D  +  F + L+ F+   I R+ L   V +L     D
Sbjct: 328 LKSMYNKAFVFCEKVKERLCSQDD--YQTFLKCLNIFSNGIIQRNDLQNLVSDLLGKFPD 385

Query: 100 LIHKYNVFV-RNEADDEEDGAGGDSDHDDDDNHEPELKTEVAKLFGDEHGDL--YEEFER 156
           L+ ++N F  R E+ D      G        +       +V +   +   DL   +E E+
Sbjct: 386 LMDEFNQFFERCESIDGFQHLAGVMSKKSFSSELLSRPVKVEEKESEHKPDLEAVKETEQ 445

Query: 157 YVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCA 216
           Y     +++++ KSIQ+LDLS C+  +PSY  LP  Y +P AS RSE+G +VLND+ V  
Sbjct: 446 Y-----KEEYMGKSIQELDLSDCECCTPSYRLLPADYPIPTASQRSELGAEVLNDHWVSV 500

Query: 217 STGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDE 276
           ++G+E  SFK  RR + EE LF+CEDDRFELD+LL  + SAA + E L+  I ++     
Sbjct: 501 TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAARSAESLLNIITEKKIS-- 558

Query: 277 KSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERR 336
            S    IE H    +LRCIERLY +HGLDVID LHKN  TALPVIL  LKQK +E  + R
Sbjct: 559 FSGSFRIEDHFTALNLRCIERLYGDHGLDVIDILHKNLATALPVILTRLKQKQDEWKKCR 618

Query: 337 SDCNKIWAHVCAKNHDK------LQEMQRELKNSKREDLVAK----EEKLQKEEEMNLDV 386
            + +K+WA+V AKNH K          Q++ KN   + LVA+    +EK Q E+++ L +
Sbjct: 619 EEFDKVWANVYAKNHYKSLDHRSFYFKQQDSKNLNAKSLVAEIKELKEKSQNEDDVLLSI 678

Query: 387 GG 388
             
Sbjct: 679 SA 680

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|215768290|dbj|BAH00519.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/405 (34%), Positives = 219/405 (54%), Gaps = 31/405 (7%)

Query: 11  KMMSSTSRDDHRDDDDDLNGVYSQFRAF-----ALADLRGAAVAFLKEMRKRFRKQHDGI 65
           KM   TS D H     + +G+     +      AL  +      F ++++++   +HD  
Sbjct: 209 KMEDPTSADAHHGGPLENHGILGASASLYDNKDALKSVYTQEFHFCEKVKEKL--EHDA- 265

Query: 66  FVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEADDEEDGAGGDSDH 125
           +  F + L  +++  I R  L   V ++ + H DL+  +N F+ +  + +   AG  S  
Sbjct: 266 YQEFLKCLHIYSQEIITRSELKNLVNDILQQHPDLMDGFNEFLEHCENIDGFLAGVFSKR 325

Query: 126 DDDDNHEPELKTEVAKLFGDE-HGDLYEEFERY-------VAKCREQKHVIKSIQDLDLS 177
                 + E + E  K  G E   D  E+   Y            ++K++ K + +LDLS
Sbjct: 326 QTGRIVKTEERKEGGK--GTEKEPDRIEKVPAYKEAPSQKPVFSSKEKYIYKPVSELDLS 383

Query: 178 KCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVL 237
            C++ +PSY  LP++Y MP A N++E+G  VLND+ V  ++G+E  SFK  R+ + EE L
Sbjct: 384 NCQRCTPSYRLLPKHYPMPPAGNKTELGASVLNDHWVSVTSGSEDYSFKHMRKNQYEESL 443

Query: 238 FKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIER 297
           F+CEDDRFELD+LL  +++A + VE+L+ K+ D +   +  S I I+ HL   +LRCIER
Sbjct: 444 FRCEDDRFELDMLLESVNAATKRVEELIEKMQDNSLKPD--SPIRIDEHLTPLNLRCIER 501

Query: 298 LYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKN------H 351
           LY +HGLDV+D L KN   ALPVIL  LKQK EE    RSD NK+WA + AKN      H
Sbjct: 502 LYGDHGLDVMDVLRKNASVALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNYHKSLDH 561

Query: 352 DKLQEMQRELKNSKREDLVAK----EEKLQKEEEMNLDV-GGNKQ 391
                 Q++ KN   + L+ +     EK +KE+++ L +  GN++
Sbjct: 562 RSFYFKQQDTKNLSTKSLLTEIKEINEKKRKEDDVLLAIAAGNRR 606

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
TAIR|locus:2100277	1372	SNL1 "AT3G01320" [Arabidopsis	0.851	0.242	0.387	1.9e-48
TAIR|locus:2147845	1367	SNL2 "AT5G15020" [Arabidopsis	0.879	0.251	0.366	3e-45
DICTYBASE|DDB_G0281045	1934	DDB_G0281045 "paired amphipath	0.503	0.101	0.363	3.1e-35
ZFIN|ZDB-GENE-070620-3	1276	sin3aa "SIN3 homolog A, transc	0.534	0.163	0.321	9.2e-34
ZFIN|ZDB-GENE-030131-8264	1196	sin3b "SIN3 homolog B, transcr	0.634	0.207	0.310	2.2e-33
UNIPROTKB|F1PH07	959	SIN3A "Uncharacterized protein	0.534	0.217	0.316	1.3e-32
UNIPROTKB|F1SJ69	1227	SIN3A "Uncharacterized protein	0.534	0.170	0.316	2.8e-32
UNIPROTKB|E1BX21	1269	SIN3A "Uncharacterized protein	0.534	0.164	0.316	3.1e-32
UNIPROTKB|Q96ST3	1273	SIN3A "Paired amphipathic heli	0.534	0.164	0.316	3.1e-32
UNIPROTKB|F1MTR3	1274	SIN3A "Uncharacterized protein	0.534	0.164	0.316	3.1e-32

TAIR|locus:2100277 SNL1 "AT3G01320" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 1.9e-48, P = 1.9e-48
 Identities = 134/346 (38%), Positives = 190/346 (54%)

Query:    47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
             A  F ++++ R   Q D  +  F + L+ F+   I R  L   V +L     DL+ ++N 
Sbjct:   338 AFVFCEKVKDRLCSQDD--YQTFLKCLNIFSNGIIQRKDLQNLVSDLLGKFPDLMDEFNQ 395

Query:   107 FVRXXXXXXXXXXXXXXXXXXXXXXXPELKTEVAKLFGDEHGDLYE-EFERYVAKCREQK 165
             F                          E  +   K+   E     E E  +   +C+++ 
Sbjct:   396 FFERCESITDGFQRLAGVMSKKLFSSEEQLSRPMKVEEKESEHKPELEAVKETEQCKKE- 454

Query:   166 HVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSF 225
             ++ KSIQ+LDLS C+  +PSY  LP  Y +P+AS RSE+G +VLND+ V  ++G+E  SF
Sbjct:   455 YMGKSIQELDLSDCECCTPSYRLLPADYPIPIASQRSELGAEVLNDHWVSVTSGSEDYSF 514

Query:   226 KQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEG 285
             K  RR + EE LF+CEDDRFELD+LL  + SAA + E L+  I ++      S    IE 
Sbjct:   515 KHMRRNQYEESLFRCEDDRFELDMLLESVSSAARSAESLLNIITEKKISF--SGSFRIED 572

Query:   286 HLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAH 345
             H    +LRCIERLY +HGLDVID L+KNP TALPVIL  LKQK  E  + R D +K+WA+
Sbjct:   573 HFTALNLRCIERLYGDHGLDVIDILNKNPATALPVILTRLKQKQGEWKKCRDDFDKVWAN 632

Query:   346 VCAKNHDKLQE------MQRELKNSKREDLVAKEEKLQKEEEMNLD 385
             V AKNH K  +       Q++ KN   + L+A+ ++L KE+  N D
Sbjct:   633 VYAKNHYKSLDHRSFYFKQQDSKNLSAKSLLAEIKEL-KEKSQNDD 677

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2147845 SNL2 "AT5G15020" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 3.0e-45, P = 3.0e-45
 Identities = 134/366 (36%), Positives = 195/366 (53%)

Query:    40 LADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDD 99
             L  +   A  F +++++R   Q D  +  F + L+ F+   I R  L   V ++     D
Sbjct:   327 LKSMYNQAFLFCEKVKERLCSQDD--YQAFLKCLNMFSNGIIQRKDLQNLVSDVLGKFPD 384

Query:   100 LIHKYNVFVRXXXXXXXXXXXXXXXXXXXXXXXPELKTEVAKLFGDEHGDLYEEFERYVA 159
             L+ ++N F                           L   V    G+E  D   + +   A
Sbjct:   385 LMDEFNQFFERCESIDGFQHLAGVMSKKSLGSEENLSRSVK---GEEK-DREHKRDVEAA 440

Query:   160 KCREQ---KHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCA 216
             K +E+   K++ KSIQ+LDLS C++ +PSY  LP  Y +P   +R + G  VLND+ V  
Sbjct:   441 KEKERSKDKYMGKSIQELDLSDCERCTPSYRLLPPDYPIPSVRHRQKSGAAVLNDHWVSV 500

Query:   217 STGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDE 276
             ++G+E  SFK  RR + EE LF+CEDDRFELD+LL  + SAA++ E+L+  I D+    E
Sbjct:   501 TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVGSAAKSAEELLNIIIDKKISFE 560

Query:   277 KSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERR 336
              S +IE   H    +LRCIERLY +HGLDV D + KNP  ALPVIL  LKQK +E  + R
Sbjct:   561 GSFRIE--DHFTALNLRCIERLYGDHGLDVTDLIRKNPAAALPVILTRLKQKQDEWTKCR 618

Query:   337 SDCNKIWAHVCAKNHDKLQE------MQRELKNSKREDLVAK----EEKLQKEEEMNLDV 386
                N +WA V AKNH K  +       Q++ KN   + LV++    +EK QKE+++ L +
Sbjct:   619 EGFNVVWADVYAKNHYKSLDHRSFYFKQQDSKNLSAKALVSEVKDLKEKSQKEDDVVLSI 678

Query:   387 G-GNKQ 391
               G +Q
Sbjct:   679 SAGYRQ 684

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

DICTYBASE|DDB_G0281045 DDB_G0281045 "paired amphipathic helix (PAH) containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 335 (123.0 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 73/201 (36%), Positives = 116/201 (57%)

Query:   173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
             ++D + CK++ PSY  LP+ Y  P  + RSE+ + VLND  V   TG+E   FK +R+ +
Sbjct:  1180 EIDFTTCKRLGPSYRALPKNYPQPRCTGRSELAESVLNDVWVSFPTGSEDFGFKSQRKNQ 1239

Query:   233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDL 292
              EE LFKCED+RFELDL++    S    ++ ++  + D +  +  + ++    +L +   
Sbjct:  1240 FEENLFKCEDERFELDLIIELNASTIRVLDPILNSLIDMHDHERLNFRMP---NLDVLHH 1296

Query:   293 RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHD 352
             R IERLY   G+++I  L+ NP  +LPVILK LKQK +E  + + + NK+W     KN+ 
Sbjct:  1297 RSIERLYNNKGMEIITALYNNPLVSLPVILKRLKQKDQEWRKAKREWNKVWKDTTEKNYY 1356

Query:   353 KLQEMQR-ELKNSKREDLVAK 372
             +  + Q    K S ++ L  K
Sbjct:  1357 RSLDYQSTSFKQSDKKTLTPK 1377

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-070620-3 sin3aa "SIN3 homolog A, transcription regulator (yeast) a" [Danio rerio (taxid:7955)]

 Score = 296 (109.3 bits), Expect = 9.2e-34, Sum P(3) = 9.2e-34
 Identities = 70/218 (32%), Positives = 121/218 (55%)

Query:   173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
             ++D + CK++  SY  LP+ Y +P  + R+ I  +VLND  V   + +E S+F   ++T+
Sbjct:   548 EIDYASCKRLGSSYRALPKSYQLPKCTGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKTQ 607

Query:   233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
              EE +++CED+RFELD++L    +    +E    K+   + +++  +K  ++  LG  S+
Sbjct:   608 YEEHMYRCEDERFELDVVLETNLATIRVLETTQKKLSRMSAEEQ--AKFRLDNTLGGFSE 665

Query:   292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
             +   + I+R+Y +   D+ID L KNP  ++P++LK LK K EE  E +   NKIW     
Sbjct:   666 IIHRKAIQRIYGDKAPDIIDGLKKNPAASVPIVLKRLKLKEEEWREAQRGFNKIWREQNE 725

Query:   349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
             K +  L+ +  +  N K+ D  V + + L  E E   D
Sbjct:   726 KYY--LKSLDHQGINFKQNDTKVLRSKTLLNEIESIFD 761

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-030131-8264 sin3b "SIN3 homolog B, transcription regulator (yeast)" [Danio rerio (taxid:7955)]

 Score = 310 (114.2 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
 Identities = 82/264 (31%), Positives = 136/264 (51%)

Query:   134 ELKTEVAKLFGDEHGDLYEEFERYVAKCREQKHVIKSIQD---------LDLSKCKQVSP 184
             EL   V    G +  +LY +F+ ++   +E  HVI  + D         +D + CK++  
Sbjct:   386 ELLQLVTPFLG-KFPELYTQFKSFLGD-KELSHVISGLSDRYMEGGGREVDYASCKRLGS 443

Query:   185 SYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDR 244
             SY  LP+ Y  P  S R+ I  +VLND  V   + +E S+F   ++T  EE L +CED+R
Sbjct:   444 SYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDER 503

Query:   245 FELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIE--IEGHLGISDLRCIERLYAEH 302
             FELD++L    +    +E +  K+   + +D++  +++  + G   +   R + R+Y + 
Sbjct:   504 FELDVVLETNLATIRVLESVQKKLSRLSLEDQERFRLDDCLGGTSEVIQRRAVYRIYGDK 563

Query:   303 GLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQRELK 362
               ++I+ L ++P TA+PV+LK LK K EE  E +   NKIW     K +  L+ +  +  
Sbjct:   564 APEIIEGLKRSPATAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAY--LKSLDHQGV 621

Query:   363 NSKREDLVAKEEK-LQKEEEMNLD 385
             N K+ D+ A   K L  E E   D
Sbjct:   622 NFKQNDMKALRSKSLLNEIESIYD 645

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PH07 SIN3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 300 (110.7 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 69/218 (31%), Positives = 122/218 (55%)

Query:   173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
             ++D + CK++  SY  LP+ Y  P  + R+ +  +VLND  V   + +E S+F   ++T+
Sbjct:   495 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 554

Query:   233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
              EE +++CED+RFELD++L    +    +E +  K+   + +++  +K  ++  LG  S+
Sbjct:   555 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 612

Query:   292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
             +   + ++R+YA+   D+ID L KNP  A+P++LK LK K EE  E +   NK+W     
Sbjct:   613 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 672

Query:   349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
             K +  L+ +  +  N K+ D  V + + L  E E   D
Sbjct:   673 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 708

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SJ69 SIN3A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 2.8e-32, Sum P(2) = 2.8e-32
 Identities = 69/218 (31%), Positives = 122/218 (55%)

Query:   173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
             ++D + CK++  SY  LP+ Y  P  + R+ +  +VLND  V   + +E S+F   ++T+
Sbjct:   499 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 558

Query:   233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
              EE +++CED+RFELD++L    +    +E +  K+   + +++  +K  ++  LG  S+
Sbjct:   559 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 616

Query:   292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
             +   + ++R+YA+   D+ID L KNP  A+P++LK LK K EE  E +   NK+W     
Sbjct:   617 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 676

Query:   349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
             K +  L+ +  +  N K+ D  V + + L  E E   D
Sbjct:   677 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 712

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0051595 "response to methylglyoxal" evidence=IEA

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016580 "Sin3 complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

UNIPROTKB|E1BX21 SIN3A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 301 (111.0 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
 Identities = 69/218 (31%), Positives = 122/218 (55%)

Query:   173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
             ++D + CK++  SY  LP+ Y  P  + R+ +  +VLND  V   + +E S+F   ++T+
Sbjct:   541 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 600

Query:   233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
              EE +++CED+RFELD++L    +    +E +  K+   + +++  +K  ++  LG  S+
Sbjct:   601 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 658

Query:   292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
             +   + ++R+YA+   D+ID L KNP  A+P++LK LK K EE  E +   NK+W     
Sbjct:   659 VIHRKALQRIYADKAADIIDGLRKNPSVAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 718

Query:   349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
             K +  L+ +  +  N K+ D  V + + L  E E   D
Sbjct:   719 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 754

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0016580 "Sin3 complex" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA

GO:0051595 "response to methylglyoxal" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

UNIPROTKB|Q96ST3 SIN3A "Paired amphipathic helix protein Sin3a" [Homo sapiens (taxid:9606)]

 Score = 300 (110.7 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
 Identities = 69/218 (31%), Positives = 122/218 (55%)

Query:   173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
             ++D + CK++  SY  LP+ Y  P  + R+ +  +VLND  V   + +E S+F   ++T+
Sbjct:   545 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 604

Query:   233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
              EE +++CED+RFELD++L    +    +E +  K+   + +++  +K  ++  LG  S+
Sbjct:   605 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 662

Query:   292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
             +   + ++R+YA+   D+ID L KNP  A+P++LK LK K EE  E +   NK+W     
Sbjct:   663 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 722

Query:   349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
             K +  L+ +  +  N K+ D  V + + L  E E   D
Sbjct:   723 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 758

GO:0007568 "aging" evidence=IEA

GO:0010243 "response to organic nitrogen" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043619 "regulation of transcription from RNA polymerase II promoter in response to oxidative stress" evidence=IEA

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA

GO:0051595 "response to methylglyoxal" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=RCA

GO:0016580 "Sin3 complex" evidence=NAS;IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IPI

GO:0033558 "protein deacetylase activity" evidence=IMP

GO:0006476 "protein deacetylation" evidence=IMP

GO:1900181 "negative regulation of protein localization to nucleus" evidence=IMP

GO:2000678 "negative regulation of transcription regulatory region DNA binding" evidence=IMP

GO:1901675 "negative regulation of histone H3-K27 acetylation" evidence=IMP

GO:0031937 "positive regulation of chromatin silencing" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0002230 "positive regulation of defense response to virus by host" evidence=IMP

GO:0002218 "activation of innate immune response" evidence=IMP

UNIPROTKB|F1MTR3 SIN3A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 300 (110.7 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
 Identities = 69/218 (31%), Positives = 122/218 (55%)

Query:   173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
             ++D + CK++  SY  LP+ Y  P  + R+ +  +VLND  V   + +E S+F   ++T+
Sbjct:   546 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 605

Query:   233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
              EE +++CED+RFELD++L    +    +E +  K+   + +++  +K  ++  LG  S+
Sbjct:   606 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 663

Query:   292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
             +   + ++R+YA+   D+ID L KNP  A+P++LK LK K EE  E +   NK+W     
Sbjct:   664 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 723

Query:   349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
             K +  L+ +  +  N K+ D  V + + L  E E   D
Sbjct:   724 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 759

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0051595 "response to methylglyoxal" evidence=IEA

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016580 "Sin3 complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020851001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (1377 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	391
pfam08295	101	pfam08295, Sin3_corepress, Sin3 family co-represso	2e-22
COG5602	1163	COG5602, SIN3, Histone deacetylase complex, SIN3 c	6e-22
smart00761	102	smart00761, HDAC_interact, Histone deacetylase (HD	6e-20
pfam02671	47	pfam02671, PAH, Paired amphipathic helix repeat	8e-06

>gnl|CDD|191990 pfam08295, Sin3_corepress, Sin3 family co-repressor

 Score = 90.4 bits (225), Expect = 2e-22
 Identities = 39/101 (38%), Positives = 61/101 (60%)

Query: 178 KCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVL 237
            C+++ PSY  LP+    P  S R E+  +VLND  V   T +E S FK  R+ + EE L
Sbjct: 1   NCERLGPSYRLLPKSEPNPPCSGRDELCKEVLNDTWVSVPTWSEDSGFKAHRKNQYEEAL 60

Query: 238 FKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKS 278
           F+CED+RFELD+++    S  + +E+L+ KI D + ++  +
Sbjct: 61  FRCEDERFELDMVIESNRSTIKLLEELLNKISDMSDEERLN 101

This domain is found on transcriptional regulators. It forms interactions with histone deacetylases. Length = 101

>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]

 Score = 97.7 bits (243), Expect = 6e-22
 Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 9/206 (4%)

Query: 174 LDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLV-CASTGTERSSFKQRRRTK 232
            DL K ++  PSY  LP+       S R ++  +VLND+ V   +  +E S F   R+ +
Sbjct: 489 KDLEKFEKCGPSYRLLPKSEEEIKCSGRDDLAWEVLNDDWVSHPTWASEDSGFIAHRKNQ 548

Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDL 292
            EE LFK E++R+E D  +       + +E+++ KI D  ++ EK++K  + G LG+   
Sbjct: 549 YEEALFKIEEERYEYDRHIEATQRTIKALEQIIDKIKDM-EESEKANK-TLPGGLGLPSK 606

Query: 293 RCIERLY-----AEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVC 347
              +++       EH  ++++ L K P   +P++LK LK K EE    + + NKIW  + 
Sbjct: 607 SIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKMKDEEWRSCKREWNKIWREIE 666

Query: 348 AKNHDK-LQEMQRELKNSKREDLVAK 372
            KN+ K L       K+  ++ L  K
Sbjct: 667 EKNYHKSLDHQGVSFKSRDKKILSTK 692

Length = 1163

>gnl|CDD|214808 smart00761, HDAC_interact, Histone deacetylase (HDAC) interacting

 Score = 83.5 bits (207), Expect = 6e-20
 Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 2/103 (1%)

Query: 178 KCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLV-CASTGTERSSFKQRRRTKQEEV 236
            C++  PSY  LP+    P  S R E+  +VLND  V   +  +E S F   R+ + EE 
Sbjct: 1   NCERCGPSYRLLPKSEKQPKCSGRDELCKEVLNDTWVSHPTWASEDSGFVAHRKNQYEEA 60

Query: 237 LFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSS 279
           LF+CED+RFELD+++    S  + +E+++ KI+D   D+E+++
Sbjct: 61  LFRCEDERFELDMVIESNSSTIKLLEEILNKIED-MSDEERAN 102

This domain is found on transcriptional regulators. It forms interactions with histone deacetylases. Length = 102

>gnl|CDD|202341 pfam02671, PAH, Paired amphipathic helix repeat

 Score = 42.1 bits (100), Expect = 8e-06
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 65  IFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFV 108
            +  F ++L+D+   +ID+  L   V EL KGH DL+  +NVF+
Sbjct: 3   KYDEFLKILNDYKAGRIDKAELIARVAELLKGHPDLLLGFNVFL 46

This family contains the paired amphipathic helix repeat. The family contains the yeast SIN3 gene (also known as SDI1) that is a negative regulator of the yeast HO gene. This repeat may be distantly related to the helix-loop-helix motif, which mediate protein-protein interactions. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
COG5602	1163	SIN3 Histone deacetylase complex, SIN3 component [	100.0
smart00761	102	HDAC_interact Histone deacetylase (HDAC) interacti	100.0
PF08295	101	Sin3_corepress: Sin3 family co-repressor; InterPro	100.0
KOG4204	231	consensus Histone deacetylase complex, SIN3 compon	99.8
PF02671	47	PAH: Paired amphipathic helix repeat; InterPro: IP	99.55
COG5602	1163	SIN3 Histone deacetylase complex, SIN3 component [	98.99
KOG4204	231	consensus Histone deacetylase complex, SIN3 compon	98.9
cd07354	80	HN_L-delphilin-R1_like First harmonin_N_like domai	83.45

>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]

Probab=100.00  E-value=2.9e-79  Score=642.92  Aligned_cols=199  Identities=30%  Similarity=0.465  Sum_probs=194.1

Q ss_pred             cccccCcccCcccccCCcCCCCCCCCCCcccccccccCccccc-cCCCCccchhhhhhchhHHHHhhcccchhhHHHHHH
Q 016325          174 LDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCA-STGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLG  252 (391)
Q Consensus       174 ~d~s~c~~~gpSYr~LP~~~~~~~cSgR~~l~~~VLND~wVs~-~~~SEd~~f~~~rKnqyEE~Lfr~EDER~E~D~~ie  252 (391)
                      .|++.|+.||||||+||+.+...+|||||+|||+||||+|||| ||+|||++|++||||||||+||++||||||||.+||
T Consensus       489 ~~le~~~~~GpSYR~LP~~e~~i~CSGRDDl~w~VLND~wVs~Pt~aSEdSgfI~hrkNqyEEaL~kiEeERyEyDr~Ie  568 (1163)
T COG5602         489 KDLEKFEKCGPSYRLLPKSEEEIKCSGRDDLAWEVLNDDWVSHPTWASEDSGFIAHRKNQYEEALFKIEEERYEYDRHIE  568 (1163)
T ss_pred             cCHhHhhhhCcchhcCCchhhhCCccCcchhhHhhhccccccCCCcccccccceeecccHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999 599999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCcchhhcccccccCCcc----hhhHHHHHHHHh-cchHHHHHHHhhCCCcchhHhhhhHHH
Q 016325          253 WMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG----ISDLRCIERLYA-EHGLDVIDNLHKNPETALPVILKSLKQ  327 (391)
Q Consensus       253 ~~~~tI~~Le~l~~~i~~~~~~~~~~~~~~l~~~l~----~i~~r~I~riYG-~~g~evl~~l~~nP~~alPvVL~RLkq  327 (391)
                      ++.+||+.|+.++.++..|++  .+++.+.|.++||    +|++.+|++||| +||.+||++|.++|++|+||||+|||+
T Consensus       569 a~~~~Ik~Le~i~d~~~~~~e--~Eka~~~Lp~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~  646 (1163)
T COG5602         569 ATQRTIKALEQIIDKIKDMEE--SEKANKTLPGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKM  646 (1163)
T ss_pred             HHHHHHHHHHHHHHHhhcchh--hHHHHhcCCCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            999999999999999999998  7788888887776    899999999999 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhhhhh------hhhhhhcccchhhhHHHHH
Q 016325          328 KVEELVERRSDCNKIWAHVCAKNHDKLQ------EMQRELKNSKREDLVAKEE  374 (391)
Q Consensus       328 K~eEw~~~r~~~nk~Wrev~~kny~kSL------fK~~DkK~~~~K~l~~eie  374 (391)
                      |++|||+++++|||+||++.+|||+|||      ||+.|||.+++|.||.||+
T Consensus       647 Kd~EWR~~kRew~kiWReIEeKN~~ksLD~~g~sfK~rDKk~lstk~il~eid  699 (1163)
T COG5602         647 KDEEWRSCKREWNKIWREIEEKNYHKSLDHQGVSFKSRDKKILSTKNILEEID  699 (1163)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHhhhhhcccceeccccccchHHHHHHHhh
Confidence            9999999999999999999999999999      9999999999999999999

>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting

Probab=100.00  E-value=2.6e-46  Score=311.85  Aligned_cols=96  Identities=39%  Similarity=0.642  Sum_probs=94.0

Q ss_pred             cCcccCcccccCCcCCCCCCCCCCcccccccccCccccccCC-CCccchhhhhhchhHHHHhhcccchhhHHHHHHHHHH
Q 016325          178 KCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTG-TERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHS  256 (391)
Q Consensus       178 ~c~~~gpSYr~LP~~~~~~~cSgR~~l~~~VLND~wVs~~~~-SEd~~f~~~rKnqyEE~Lfr~EDER~E~D~~ie~~~~  256 (391)
                      +|++||||||+||++|+.++||||++||++||||+|||||+| |||++|++||||||||+||||||||||+||+|+++.+
T Consensus         1 ~c~~~gpSYr~Lpk~~~~~~cSgR~~l~~~VLND~wvsvps~~SED~~F~~~rKNqyEE~Lfr~EDeR~E~D~~ie~~~~   80 (102)
T smart00761        1 NCERCGPSYRLLPKSEKQPKCSGRDELCKEVLNDTWVSHPTWASEDSGFVAHRKNQYEEALFRCEDERFELDMVIESNSS   80 (102)
T ss_pred             CCcccCcchhhCCcccCCCCCCCccHHHHHHhCCceEeecCCcccccchhhhhccHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            599999999999999999999999999999999999999865 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCc
Q 016325          257 AAENVEKLMIKIDDQNQ  273 (391)
Q Consensus       257 tI~~Le~l~~~i~~~~~  273 (391)
                      ||+.|++|+++|+.|++
T Consensus        81 ti~~le~l~~~~~~~~~   97 (102)
T smart00761       81 TIKLLEEILNKIEDMSD   97 (102)
T ss_pred             HHHHHHHHHHHHhcCCh
Confidence            99999999999999998

This domain is found on transcriptional regulators. It forms interactions with histone deacetylases.

>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators

Probab=100.00  E-value=8.2e-45  Score=303.96  Aligned_cols=96  Identities=42%  Similarity=0.651  Sum_probs=94.6

Q ss_pred             cCcccCcccccCCcCCCCCCCCCCcccccccccCccccccCCCCccchhhhhhchhHHHHhhcccchhhHHHHHHHHHHH
Q 016325          178 KCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSA  257 (391)
Q Consensus       178 ~c~~~gpSYr~LP~~~~~~~cSgR~~l~~~VLND~wVs~~~~SEd~~f~~~rKnqyEE~Lfr~EDER~E~D~~ie~~~~t  257 (391)
                      +|++||||||+||++|+.++||||++||++||||+|||||+||||++|++||||||||+||||||||||+||+|+++++|
T Consensus         1 ~c~~~gpSYr~LP~~~~~~~cSgR~~l~~~VLND~wvs~p~~sEd~~f~~~kKnqyEE~lf~~EDeR~E~D~~ie~~~~t   80 (101)
T PF08295_consen    1 NCERCGPSYRLLPKSYQNPPCSGRDELCWSVLNDTWVSVPSWSEDSSFKAMKKNQYEEALFRCEDERFELDMLIESNRST   80 (101)
T ss_pred             CCCcCccchhhCCcccCCCCCCCCchhhhhhcCCEEEEeCCccccccccchhhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCc
Q 016325          258 AENVEKLMIKIDDQNQ  273 (391)
Q Consensus       258 I~~Le~l~~~i~~~~~  273 (391)
                      |+.|++|+.+|+.|++
T Consensus        81 I~~Le~l~~~i~~~~~   96 (101)
T PF08295_consen   81 IKLLEELQEKIQDMSP   96 (101)
T ss_pred             HHHHHHHHHHHhcCCH
Confidence            9999999999999998

It forms interactions with histone deacetylases [].

>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]

Probab=99.80  E-value=1.6e-20  Score=178.77  Aligned_cols=193  Identities=19%  Similarity=0.146  Sum_probs=141.5

Q ss_pred             hHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhccChHHHHHHchhccCcCCCccCCCCCC
Q 016325           43 LRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEADDEEDGAGGD  122 (391)
Q Consensus        43 l~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~~~~~~~G~~  122 (391)
                      .++||++|+++||.+|++ +|++|.+||+||++|+.++||..+|+++|++||+||||||.|||.|||+++.+.-...+.-
T Consensus        18 t~~DAlsYl~~VK~~f~d-~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~~~~   96 (231)
T KOG4204|consen   18 TLDDALAYLKAVKEAFQD-EPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSEAKD   96 (231)
T ss_pred             ChHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCccccc
Confidence            489999999999999988 6999999999999999999999999999999999999999999999999998763221100


Q ss_pred             CCCCCCCCCchhhHHHHHHhhccccCChHHHHHHHHhhhhhcccccccccccccccCcccCcccccCCcCCCCCCCCCCc
Q 016325          123 SDHDDDDNHEPELKTEVAKLFGDEHGDLYEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRS  202 (391)
Q Consensus       123 ~~~~~dk~~~~e~~~ev~~lf~d~~~d~~~efer~~~~~~~~~~~~~p~~e~d~s~c~~~gpSYr~LP~~~~~~~cSgR~  202 (391)
                      . .   .......          +.+..-.-+.    ......+.     .   ..|.+..-.|+.++..|+...     
T Consensus        97 ~-~---~~~~~~~----------~~~~~~~~~~----~~~~~~~~-----~---~~~~~a~~fv~klk~rf~~~~-----  145 (231)
T KOG4204|consen   97 E-F---TIYGATS----------YLPSPKVAFH----EEILKLLE-----D---VEFDRAISFVNKLKTRFQGDD-----  145 (231)
T ss_pred             c-c---ccccccc----------cCCCcccccc----chhhhhcc-----c---chHHHHHHHHHHHHHHhcCCH-----
Confidence            0 0   0000000          0000000000    00000000     0   344555667888888887664     


Q ss_pred             ccccccccCccccccCCCCccchhhhhhchhHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016325          203 EIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQ  271 (391)
Q Consensus       203 ~l~~~VLND~wVs~~~~SEd~~f~~~rKnqyEE~Lfr~EDER~E~D~~ie~~~~tI~~Le~l~~~i~~~  271 (391)
                          +|.+.-|......+|+..++.--+...+.-++++||.+.|++..+-....+......+...+..+
T Consensus       146 ----~v~~s~l~il~~y~~~~ks~~e~~~eV~~L~~~~~DL~~ef~~~lp~~~~~~~~~~~~~~~~~~~  210 (231)
T KOG4204|consen  146 ----HVYKSFLEILRMYQEGNKSVSEVYQEVEALLQGHEDLLEEFSHFLPTDPATGSLNQKLRSVLTVR  210 (231)
T ss_pred             ----HHHHHHHHHHHHHhhccchHHHHHHHHHHHHccCHHHHHHHHhhccCCcccccchhhhhhhhHhh
Confidence                89999999998889998888888999999999999999999998888877777776666655443

>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat

Probab=99.55  E-value=7.6e-15  Score=106.59  Aligned_cols=47  Identities=34%  Similarity=0.705  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhccChHHHHHHchhcc
Q 016325           63 DGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVR  109 (391)
Q Consensus        63 p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp  109 (391)
                      |++|++||++|++|++++++..+|+++|+.||++||||+.+|+.|||
T Consensus         1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP   47 (47)
T PF02671_consen    1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP   47 (47)
T ss_dssp             HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred             ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence            78999999999999999999999999999999999999999999998

The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....

>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]

Probab=98.99  E-value=9.7e-10  Score=118.69  Aligned_cols=69  Identities=17%  Similarity=0.389  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhccChHHHHHHchhccCcCC
Q 016325           44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEAD  113 (391)
Q Consensus        44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~  113 (391)
                      .+.|+.|+++||.||.++ |+.|..||++|+.|+....++.+|+.+|+.||..+|||+++|+.|||...-
T Consensus       269 ~nqAI~~vnkVK~r~~~~-pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~~~  337 (1163)
T COG5602         269 FNQAIIFVNKVKVRFQNN-PEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSSV  337 (1163)
T ss_pred             hhHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCccccc
Confidence            689999999999999775 999999999999999999999999999999999999999999999999643

>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]

Probab=98.90  E-value=3.2e-09  Score=101.58  Aligned_cols=70  Identities=21%  Similarity=0.524  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhccChHHHHHHchhccCcCC
Q 016325           43 LRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEAD  113 (391)
Q Consensus        43 l~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~  113 (391)
                      ..+.|.+|+++||+||+++ +++|..||.+|++|+.+..+..+|+..|..||++|+||+.+|..|||....
T Consensus       126 ~~~~a~~fv~klk~rf~~~-~~v~~s~l~il~~y~~~~ks~~e~~~eV~~L~~~~~DL~~ef~~~lp~~~~  195 (231)
T KOG4204|consen  126 EFDRAISFVNKLKTRFQGD-DHVYKSFLEILRMYQEGNKSVSEVYQEVEALLQGHEDLLEEFSHFLPTDPA  195 (231)
T ss_pred             hHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHccCHHHHHHHHhhccCCcc
Confidence            3678999999999999764 799999999999999999999999999999999999999999999998754

>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains

Probab=83.45  E-value=5.2  Score=32.58  Aligned_cols=67  Identities=15%  Similarity=0.251  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhc--cChHHHHHHchhccCcCC
Q 016325           45 GAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFK--GHDDLIHKYNVFVRNEAD  113 (391)
Q Consensus        45 ~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~--~hpdLi~~F~~FLp~~~~  113 (391)
                      ..|..|..+|...+.+ +|..=..-...|+.|.++. +...++..+..+|.  .|.-|++.-..|+|....
T Consensus         3 ~kA~eF~~Kvd~iL~~-dp~~Ke~l~~aLk~Ya~~k-~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr   71 (80)
T cd07354           3 RKAQEFSRKVDAILGD-DPVKKEQVFAALKQYAADK-NVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHR   71 (80)
T ss_pred             hHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhH
Confidence            4688999999999965 6999999999999999876 67888888888884  455788888888887654

This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	391
2cr7_A	80	Paired amphipathic helix protein SIN3B; paired amp	2e-11
2czy_A	77	Paired amphipathic helix protein SIN3B; SIN3, PAH1	3e-11
2f05_A	105	Paired amphipathic helix protein SIN3B; helix bund	4e-06
1e91_A	85	Paired amphipathic helix protein SIN3B; eukaryotic	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1g1e_B	89	SIN3A; four-helix bundle, protein-peptide complex,	1e-04

>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A Length = 80

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 47  AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
           A+ +L +++ RF       +  F +++ +F    ID   +   V +LF  H DLI  +N 
Sbjct: 13  ALTYLDQVKIRFGSDPA-TYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNA 71

Query: 107 F 107
           F
Sbjct: 72  F 72

>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus} Length = 77

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 47  AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
           A+ +L +++ RF       +  F +++ +F    ID   +   V +LF  H DLI  +N 
Sbjct: 7   ALTYLDQVKIRFGSDPA-TYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNA 65

Query: 107 F 107
           F
Sbjct: 66  F 66

>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1 Length = 105

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 11/96 (11%)

Query: 47  AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGL----------EVKELFKG 96
           A++++ +++ RF    + I+  F ++L  + K ++                 EV  LF+G
Sbjct: 10  AISYVNKIKTRFLDHPE-IYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRG 68

Query: 97  HDDLIHKYNVFVRNEADDEEDGAGGDSDHDDDDNHE 132
            +DL+ ++  F+         G G    +    N E
Sbjct: 69  QEDLLSEFGQFLPEAKRSLFTGNGSCEMNSGQKNEE 104

>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A Length = 85

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 11/71 (15%)

Query: 47  AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGL----------EVKELFKG 96
           A++++ +++ RF    + I+  F ++L  + K ++                 EV  LF+G
Sbjct: 10  AISYVNKIKTRFLDHPE-IYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRG 68

Query: 97  HDDLIHKYNVF 107
            +DL+ ++  F
Sbjct: 69  QEDLLSEFGQF 79

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 7e-06
 Identities = 46/290 (15%), Positives = 93/290 (32%), Gaps = 69/290 (23%)

Query: 152 EEFERYVAKCREQKHVIKSIQDLDLSK------CKQVSPSYWRL------PEYYWM---- 195
           ++  + +    E  H+I S   +  +         +      +         Y ++    
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 196 ------PLASNRSEIG--DQVLNDNLVCASTGTERSSFKQRRRTKQEE-------VLF-- 238
                 P    R  I   D++ NDN V A     R     + R    E       ++   
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 239 ----K-------CEDDRFELDLLLG--WM--------HSAAENVEKLMIKID-DQNQDDE 276
               K       C   + +  +     W+         +  E ++KL+ +ID +     +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 277 KSSKIEIEGHLGISDLRCI--ERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVE 334
            SS I++  H   ++LR +   + Y E+ L V+ N+ +N +        +     + L+ 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNV-QNAK-----AWNAFNLSCKILLT 271

Query: 335 RRSDCNKIWAHVCAKNHDKLQEMQRELKNSKREDLVAK-----EEKLQKE 379
            R      +       H  L      L   + + L+ K      + L +E
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B Length = 89

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 14/74 (18%)

Query: 47  AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGL-------------EVKEL 93
           A+ ++ +++ RF+ Q D I+  F ++L  + K + +    G              +V  L
Sbjct: 13  AINYVNKIKNRFQGQPD-IYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARL 71

Query: 94  FKGHDDLIHKYNVF 107
           FK  +DL+ ++  F
Sbjct: 72  FKNQEDLLSEFGQF 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	391
2czy_A	77	Paired amphipathic helix protein SIN3B; SIN3, PAH1	99.85
2cr7_A	80	Paired amphipathic helix protein SIN3B; paired amp	99.82
1e91_A	85	Paired amphipathic helix protein SIN3B; eukaryotic	99.81
2f05_A	105	Paired amphipathic helix protein SIN3B; helix bund	99.78
1g1e_B	89	SIN3A; four-helix bundle, protein-peptide complex,	99.77
2ld7_B	75	Paired amphipathic helix protein SIN3A; transcript	99.77
4fqn_A	98	Malcavernin; helical domain, harmonin-homology dom	82.83

>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}

Probab=99.85  E-value=2e-21  Score=154.59  Aligned_cols=71  Identities=24%  Similarity=0.446  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhccChHHHHHHchhccCcCCCc
Q 016325           44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEADDE  115 (391)
Q Consensus        44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~~~  115 (391)
                      +++|++|+++||.+|++ +|++|.+||++|++|+.+++++.+|+++|+.||+||||||.|||.|||+++.+.
T Consensus         4 ~~dA~~yl~~VK~~F~~-~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~~hpdLi~gFn~FLP~~~~i~   74 (77)
T 2czy_A            4 VEDALTYLDQVKIRFGS-DPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRID   74 (77)
T ss_dssp             HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTTCHHHHHHHHTTSCSSSCCC
T ss_pred             HHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHCCCCceec
Confidence            78999999999999987 599999999999999999999999999999999999999999999999999875

>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A

Probab=99.82  E-value=2.8e-20  Score=148.92  Aligned_cols=69  Identities=25%  Similarity=0.498  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhccChHHHHHHchhccCcCC
Q 016325           44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEAD  113 (391)
Q Consensus        44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~  113 (391)
                      +++|++|+++||.+|++ +|++|.+||++|++|+.++|++.+|+++|+.||++|||||.|||.|||+++.
T Consensus        10 ~~dA~~yl~~VK~rF~~-~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gFn~FLP~~~~   78 (80)
T 2cr7_A           10 VEDALTYLDQVKIRFGS-DPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSGPS   78 (80)
T ss_dssp             SCCSHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHHHHSSCSSS
T ss_pred             HHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHCcCCCC
Confidence            56779999999999987 5999999999999999999999999999999999999999999999999885

>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A

Probab=99.81  E-value=4.2e-20  Score=149.53  Aligned_cols=68  Identities=24%  Similarity=0.596  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCC----------ChhhHHHHHHHHhccChHHHHHHchhccCcC
Q 016325           44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKI----------DRDSLGLEVKELFKGHDDLIHKYNVFVRNEA  112 (391)
Q Consensus        44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I----------~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~  112 (391)
                      +++|++|+++||.||++ +|++|++||+||++|++++|          +..+|+++|+.||+||||||.||+.|||+++
T Consensus         7 ~~~A~~yv~kVK~rF~~-~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~FLP~~~   84 (85)
T 1e91_A            7 FNNAISYVNKIKTRFLD-HPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAK   84 (85)
T ss_dssp             HHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHccCHHHHHHHHHHCcCcc
Confidence            78999999999999987 59999999999999999985          4678999999999999999999999999986

>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1

Probab=99.78  E-value=1.7e-19  Score=151.30  Aligned_cols=71  Identities=23%  Similarity=0.558  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCC----------ChhhHHHHHHHHhccChHHHHHHchhccCcCC
Q 016325           44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKI----------DRDSLGLEVKELFKGHDDLIHKYNVFVRNEAD  113 (391)
Q Consensus        44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I----------~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~  113 (391)
                      +++|++|+++||.||++ +|++|.+||+||++|+.+++          ++.+|+++|+.||++|||||.||+.|||+++.
T Consensus         7 ~~dA~~YvnkVK~rF~d-~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn~FLP~~~~   85 (105)
T 2f05_A            7 FNNAISYVNKIKTRFLD-HPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKR   85 (105)
T ss_dssp             HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSCGGGC
T ss_pred             HHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHccCHHHHHHHHHHCCCccc
Confidence            78999999999999987 59999999999999999876          45689999999999999999999999999998


Q ss_pred             Cc
Q 016325          114 DE  115 (391)
Q Consensus       114 ~~  115 (391)
                      +.
T Consensus        86 ~~   87 (105)
T 2f05_A           86 SL   87 (105)
T ss_dssp             --
T ss_pred             cC
Confidence            75

>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B

Probab=99.77  E-value=1.8e-19  Score=147.06  Aligned_cols=67  Identities=21%  Similarity=0.552  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCC-------------CChhhHHHHHHHHhccChHHHHHHchhccC
Q 016325           44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSK-------------IDRDSLGLEVKELFKGHDDLIHKYNVFVRN  110 (391)
Q Consensus        44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~-------------I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~  110 (391)
                      .++|++|+++||.||++ +|++|++||+||++|+++.             |+..+|+++|+.||++|||||.||+.|||+
T Consensus        10 ~~~A~~YvnkVK~rF~~-~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~~F~~FLP~   88 (89)
T 1g1e_B           10 FNHAINYVNKIKNRFQG-QPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPD   88 (89)
T ss_dssp             HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHccCHHHHHHHHHHCcC
Confidence            78999999999999987 5999999999999999764             445899999999999999999999999997


Q ss_pred             c
Q 016325          111 E  111 (391)
Q Consensus       111 ~  111 (391)
                      +
T Consensus        89 ~   89 (89)
T 1g1e_B           89 A   89 (89)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}

Probab=99.77  E-value=6.8e-19  Score=139.25  Aligned_cols=67  Identities=21%  Similarity=0.346  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhccChHHHHHHchhccCcC
Q 016325           44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEA  112 (391)
Q Consensus        44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~  112 (391)
                      ..+|++||++||++|++  +++|.+||+||++|++++||+.+|+++|..||++||||+.||+.|||.+.
T Consensus         8 ~~de~~Ff~kVK~~l~~--~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~lg~~pdL~~~Fk~Fl~~~e   74 (75)
T 2ld7_B            8 VGTESLFFDKVRKALRS--AEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLGYKE   74 (75)
T ss_dssp             SSHHHHHHHHHHHHHCS--HHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHTTCHHHHHHHHHHHTCCC
T ss_pred             cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhcCcCHHHHHHHHHHHHccCHHHHHHHHHHcCCCC
Confidence            45779999999999954  78999999999999999999999999999999999999999999999864

>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}

Probab=82.83  E-value=2  Score=34.95  Aligned_cols=63  Identities=11%  Similarity=0.314  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhccCh-HHHHHHchhccCc
Q 016325           45 GAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHD-DLIHKYNVFVRNE  111 (391)
Q Consensus        45 ~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~hp-dLi~~F~~FLp~~  111 (391)
                      +.-.+|+.-++..|   .|..-.+|..+|+.|+.+ +++.+.......|++.+. .|+.+-.-|+|+.
T Consensus        16 e~lqdYM~~L~~~L---~~~ElqqFA~Llr~YR~G-~~I~~Fc~kLl~LyG~~Rk~LL~gmRpFIp~~   79 (98)
T 4fqn_A           16 ELLQDYMLTLRTKL---SSQEIQQFAALLHEYRNG-ASIHEFCINLRQLYGDSRKFLLLGLRPFIPEK   79 (98)
T ss_dssp             HHHHHHHHHHTTTS---CHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHCGGGGGGGGGGGGGSCHH
T ss_pred             HHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhchHHHHHHhhccCCCChh
Confidence            34467999999999   377999999999999999 799999999999998776 7777777777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	391
d2f05a1	85	a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [Tax	2e-06
d1s5qb_	89	a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId:	3e-06

>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: All alpha proteins
fold: PAH2 domain
superfamily: PAH2 domain
family: PAH2 domain
domain: Sin3B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 11/72 (15%)

Query: 47  AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGL----------EVKELFKG 96
           A++++ +++ RF    + I+  F ++L  + K ++                 EV  LF+G
Sbjct: 10  AISYVNKIKTRFLDHPE-IYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRG 68

Query: 97  HDDLIHKYNVFV 108
            +DL+ ++  F+
Sbjct: 69  QEDLLSEFGQFL 80

>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All alpha proteins
fold: PAH2 domain
superfamily: PAH2 domain
family: PAH2 domain
domain: Sin3A
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 47  AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTK-------------SKIDRDSLGLEVKEL 93
           A+ ++ +++ RF+ Q D I+  F ++L  + K               +    +  +V  L
Sbjct: 13  AINYVNKIKNRFQGQPD-IYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARL 71

Query: 94  FKGHDDLIHKYNVF 107
           FK  +DL+ ++  F
Sbjct: 72  FKNQEDLLSEFGQF 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	391
d2f05a1	85	Sin3B {Mouse (Mus musculus) [TaxId: 10090]}	99.79
d1s5qb_	89	Sin3A {Mouse (Mus musculus) [TaxId: 10090]}	99.77

>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: PAH2 domain
superfamily: PAH2 domain
family: PAH2 domain
domain: Sin3B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.8e-20  Score=147.75  Aligned_cols=69  Identities=23%  Similarity=0.586  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCC----------ChhhHHHHHHHHhccChHHHHHHchhccCcCC
Q 016325           44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKI----------DRDSLGLEVKELFKGHDDLIHKYNVFVRNEAD  113 (391)
Q Consensus        44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I----------~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~  113 (391)
                      .++|++|+++||.+|++ +|++|.+||+||++|++++|          ++.+|+++|+.||+|||||+.||+.|||++++
T Consensus         7 ~~dA~~yl~kVK~rf~~-~p~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~~hpdLl~~F~~FLP~~~~   85 (85)
T d2f05a1           7 FNNAISYVNKIKTRFLD-HPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKR   85 (85)
T ss_dssp             HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSCGGGC
T ss_pred             HHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHhhccccccccccCCHHHHHHHHHHHHccCHHHHHHHHHHCccccC
Confidence            67999999999999986 59999999999999998765          56689999999999999999999999999873

>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: PAH2 domain
superfamily: PAH2 domain
family: PAH2 domain
domain: Sin3A
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=3.5e-19  Score=143.28  Aligned_cols=67  Identities=21%  Similarity=0.543  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcC-------------CCChhhHHHHHHHHhccChHHHHHHchhccC
Q 016325           44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKS-------------KIDRDSLGLEVKELFKGHDDLIHKYNVFVRN  110 (391)
Q Consensus        44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~-------------~I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~  110 (391)
                      +++|++|+++||++|++ +|++|.+||+||++|+++             .++..+|+++|+.||+|||||+.||+.|||+
T Consensus        10 ~~~A~~yl~kVK~~f~d-~p~~Y~~FL~il~~f~~~~~~~~~~~~~~~~~~~~~~v~~rV~~Lf~~hpdLi~~Fn~FLPe   88 (89)
T d1s5qb_          10 FNHAINYVNKIKNRFQG-QPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPD   88 (89)
T ss_dssp             HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCSCCHHHHHHHHHHHSCSCHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHhhhccccccccccccccHHHHHHHHHHHHccCHHHHHHHHhhCCC
Confidence            78999999999999986 599999999999999974             5678899999999999999999999999997


Q ss_pred             c
Q 016325          111 E  111 (391)
Q Consensus       111 ~  111 (391)
                      .
T Consensus        89 s   89 (89)
T d1s5qb_          89 A   89 (89)
T ss_dssp             C
T ss_pred             C
Confidence            3