Citrus Sinensis ID: 016338

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccHHHHEHEHHHHHHHEEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccHHHHHccccHHHHEEHHccccHHHHHHHHccHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEHHHccHHHHccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MSVAVVPLAakfgwsssflGIVQSSFLWGYIFSSVIGGalvdkyggkKVLAWGVALWSLStlltpwaatHSTASLLAVRAFFGLaegvampamstltsrwfpsheraSAIGICMGGFHLGNVVGLLLTPImlstigisgPFILFSSLGLLWLstwtskvtndpcnspfvskSELRLIQagksdsvkkrnppslrhllsklpSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAawfsavpwgtmavsGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Flexible Loop (DISEMBL)
MSVAVVPlaakfgwsssFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAgksdsvkkrnppslRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Low Complexity Region (SEG)
MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFsslgllwlstwtsKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Disordered region (IsUnstruct)
***AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS*F**************************HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST*****
Disordered Region (DISOPRED)
MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKS*********************RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Disordered Region (DISEMBL)
MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGK********PPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Disordered Region (DISPRO)
*SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	391	2.2.26 [Sep-21-2011]
Q7XJR2	512	Probable anion transporte	yes	no	1.0	0.763	0.789	0.0
Q53WP9	535	Probable anion transporte	yes	no	1.0	0.730	0.688	1e-158
Q66GI9	533	Probable anion transporte	no	no	0.997	0.731	0.575	1e-129
Q8W0H5	519	Probable anion transporte	no	no	0.997	0.751	0.553	1e-127
Q9SDI4	529	Probable anion transporte	no	no	0.992	0.733	0.428	9e-88
Q652N5	591	Probable anion transporte	no	no	0.994	0.658	0.416	4e-87
O82390	512	Sodium-dependent phosphat	no	no	0.992	0.757	0.412	5e-87
Q8GX78	541	Probable anion transporte	no	no	0.987	0.713	0.411	7e-86
Q3E9A0	517	Probable anion transporte	no	no	0.966	0.731	0.34	2e-51
Q9MZD1	495	Sialin OS=Ovis aries GN=S	N/A	no	0.966	0.763	0.293	4e-45

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/394 (78%), Positives = 355/394 (90%), Gaps = 3/394 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVPLA K GWSSSFLG+VQSSFLWGYIFSSVIGGALVD+YGGK+VLAWGVALWSL+
Sbjct: 119 MSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLA 178

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAA HST +LL VRAFFGLAEGVAMP+M+TL SRWFP  ERASA+GI M GFH+G
Sbjct: 179 TLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMG 238

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NVVGLLLTP+MLS+IGISGPFILF+SLGLLW+STW+S VTN+P +SPF+++SELRLIQAG
Sbjct: 239 NVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAG 298

Query: 181 KS---DSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
           K     ++  +  PSLR LLSKLP+W +I AN+TNNWGYFVLLSWMP+YF TVFNVNLKQ
Sbjct: 299 KPVQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQ 358

Query: 238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
           AAWFSA+PW TMA+SGY AG ASD LI+ G+S+T VRKIMQSIGF+GPG+SLLCLN+AKS
Sbjct: 359 AAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKS 418

Query: 298 PAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFV 357
           P+ AAV +TIALSLSSFSQAG+LLN+Q+IAP  AGFLHGI+N AGTLAAI+STIGTGYFV
Sbjct: 419 PSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFV 478

Query: 358 QWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           QWLGSFQAFLTVTA LYF TT+FW L++TGERVF
Sbjct: 479 QWLGSFQAFLTVTAFLYFATTVFWLLFATGERVF 512

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  559 bits (1440), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/392 (68%), Positives = 328/392 (83%), Gaps = 1/392 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVP AA++GWSSSFLGIVQSSFLWGY+FSS++GGAL D+YGGKKV+A   ALWSL+
Sbjct: 143 MSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVMAGAAALWSLA 202

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T LTPWAA+ ST  LLA+RA FGLAEGVA P MST   +WFP+HERA+A+GI MGGFHLG
Sbjct: 203 TFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTFLPKWFPTHERATAVGISMGGFHLG 262

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV+  L TPI++S IG++G F  F+SLG LWLS W   V +DP +S  +SKSEL+LI AG
Sbjct: 263 NVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWLFNVESDPLDSRTISKSELQLILAG 322

Query: 181 KSDS-VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           +S S ++    PSLR +LSK+  W +I+AN+ NNWGYFVLLSWMP+YF TV+NVNLKQAA
Sbjct: 323 RSASKIQGSKFPSLREILSKIEMWAIIVANVVNNWGYFVLLSWMPVYFKTVYNVNLKQAA 382

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSA+PW  MA+SGY+AG ++D LIK+G+S+ LVRKIMQSIGFIGPGVSLLCL +A++P+
Sbjct: 383 WFSAIPWAVMALSGYVAGASADFLIKSGFSVALVRKIMQSIGFIGPGVSLLCLRFAQTPS 442

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW 359
           VAAVL+TIALSLSSFSQAGY  N+Q+IAP  AG LHG+ N  GT+AAI+STIGTGYFVQW
Sbjct: 443 VAAVLMTIALSLSSFSQAGYFCNVQDIAPKYAGSLHGLTNGIGTVAAIVSTIGTGYFVQW 502

Query: 360 LGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           LGSFQAFLT+TA LYF  T+F+N Y+TG+ +F
Sbjct: 503 LGSFQAFLTLTAVLYFSATVFYNTYATGDLIF 534

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  462 bits (1190), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/396 (57%), Positives = 296/396 (74%), Gaps = 6/396 (1%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPL+   GWS SF GIVQSSFLWGY+ S + GG LVD+YGGK V+AWGVALWSL+
Sbjct: 132 MSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAWGVALWSLA 191

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T LTPWAA  S  +LLA RA  G+AEGVA+P M+ + +RWFP  ER+ A+GI M GF LG
Sbjct: 192 TFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVARWFPPTERSRAVGIAMAGFQLG 251

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NVVGL+L+PI++S  GI GPF++F   G LWL  W S  ++ P   P ++KSEL  I+  
Sbjct: 252 NVVGLMLSPILMSQGGIYGPFVIFGLSGFLWLLVWLSATSSAPDRHPQITKSELEYIKQK 311

Query: 181 KSDSVKKRNP------PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN 234
           K  S  +         P    LLSK+P+W VI+AN  ++WG+FV+LSWMPIYFN+V++VN
Sbjct: 312 KQISTMENKRISTSGIPPFGRLLSKMPTWAVIVANSMHSWGFFVILSWMPIYFNSVYHVN 371

Query: 235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY 294
           LKQAAWFSAVPW  MA +GY+AG  SD LI+ G S+TL RKIMQSIGFIGPG++L+ L  
Sbjct: 372 LKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGTSITLTRKIMQSIGFIGPGIALIGLTT 431

Query: 295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTG 354
           AK P VA+  +++A+ L SFS  G+L+N+QEIAP+ +G LHG+  +AGTLAAI+ T+G G
Sbjct: 432 AKQPLVASAWLSLAVGLKSFSHLGFLINLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAG 491

Query: 355 YFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERV 390
           +FV+ LGSFQ F+ +TA LY ++ +F+N+Y+TGERV
Sbjct: 492 FFVELLGSFQGFILLTAILYLLSALFYNIYATGERV 527

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/396 (55%), Positives = 294/396 (74%), Gaps = 6/396 (1%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPL+  +GW+ SF G+VQSSFLWGY+ S +IGGALVD YGGK+V+A+GVALWSL+
Sbjct: 118 MSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYGVALWSLA 177

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T L+PWAA  S    L+ R   G+AEGVA+P+M+ +  RWFP  ER+SA+GI M GF LG
Sbjct: 178 TFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIAMAGFQLG 237

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           N +GLLL+PI++S  GI GPF++F   G LW+  W S ++  P  +  +S  EL  I  G
Sbjct: 238 NTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQISAHELDYITRG 297

Query: 181 K------SDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN 234
           +      S   + R  P    LLSK P+W +I AN  ++WGYFV+LSWMP+YF T+++VN
Sbjct: 298 QKLVKTQSGGERLRKVPPFSKLLSKWPTWALISANAMHSWGYFVILSWMPVYFKTIYHVN 357

Query: 235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY 294
           L++AAWFSA+PW  MAV GY+AG  SD LI+ G S+TL RKIMQ+IGF+GPGV+LL LN 
Sbjct: 358 LREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSITLTRKIMQTIGFVGPGVALLGLNA 417

Query: 295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTG 354
           AKSP +A+  +TIA+ L SF  +G+L+N+QEIAP  AG LHG++N+AGT AAI+ T+G G
Sbjct: 418 AKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQYAGVLHGMSNTAGTFAAILGTVGAG 477

Query: 355 YFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERV 390
           +FV  +GSF+ FL +T+ LYF +T+FW++++TGERV
Sbjct: 478 FFVDRMGSFRGFLILTSLLYFSSTLFWDIFATGERV 513

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  324 bits (830), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 167/390 (42%), Positives = 242/390 (62%), Gaps = 2/390 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MS+A++P++A+FGW+   +G++QSSF WGY+ + + GG   D  GGK VL +GV  WS++
Sbjct: 140 MSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGGIWADTVGGKTVLGFGVIWWSIA 199

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T LTP+AA      LL  RAF G+ EGVAMPAM+ + S+W P  ER+ ++ +   G +LG
Sbjct: 200 TALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLG 259

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           +V GL  +P+++   G    F  F SLG+ W STW SK  + P   P +S  E +LI + 
Sbjct: 260 SVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWASKAYSSPLEDPGISAEEKKLITSQ 319

Query: 181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
            +     +  P    +LSK P W +I+++  +NWG F+LL+WMP Y+N V   NL ++  
Sbjct: 320 TTGGEPVKEIP-WGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL 378

Query: 241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
           F  +PW TMAVS    G  +D+L+  G S+T VRKIMQSIGF+GP   L  L++  SPA+
Sbjct: 379 FCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKIMQSIGFLGPAFFLTQLSHIDSPAM 438

Query: 301 AAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWL 360
           A + +  +    +FSQ+G   N Q+I P  AG L G++N+AG LA +  T  TGY +Q  
Sbjct: 439 AVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-H 497

Query: 361 GSFQAFLTVTAGLYFVTTIFWNLYSTGERV 390
           GS+     V+  LY V T+ WNL+STGE++
Sbjct: 498 GSWDDVFKVSVVLYLVGTLVWNLFSTGEKI 527

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  322 bits (824), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 163/391 (41%), Positives = 248/391 (63%), Gaps = 2/391 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MS+A++P++++FGWS + +G++QSSF WGY+ + ++GG   D++GGK VL +GV  WS++
Sbjct: 202 MSIAILPMSSEFGWSPATVGLIQSSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIA 261

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T+LTP AA      LL +RAF G+ EGVAMPAM+ + S+W P  ER+ ++ +   G +LG
Sbjct: 262 TVLTPLAAKIGLPFLLVMRAFMGIGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLG 321

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           +V GL  +P+++S  G    F  F SLG +W + W  K  + P   P +SK+E R I  G
Sbjct: 322 SVTGLAFSPLLISRFGWPSVFYAFGSLGSVWFALWQRKAHSSPSEDPELSKAEKRYILGG 381

Query: 181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
            +      + P  + +LSK P W +I+++  +NWG F+LL+WMP Y+N V   NL ++  
Sbjct: 382 STLKEPVTSIP-WKLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL 440

Query: 241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
              +PW TMA+   + G  +D+L+  G S+T VRKIMQSIGF+GP + L  L+  ++PA+
Sbjct: 441 LCVLPWLTMAIFANIGGWIADTLVGRGVSITNVRKIMQSIGFLGPALFLTLLSKVRTPAM 500

Query: 301 AAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWL 360
           A + +  +    +FSQ+G   N Q+I P  AG L G++N+AG LA +  T  TGY +Q  
Sbjct: 501 AVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-K 559

Query: 361 GSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           GS+ +   V   LY V T+ WN++STGE+V 
Sbjct: 560 GSWDSVFQVAVVLYIVGTVVWNVFSTGEKVL 590

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  321 bits (823), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 161/390 (41%), Positives = 244/390 (62%), Gaps = 2/390 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MS+A++P++A++GW+ + +G++QSSF WGY+ + + GG   D  GGK+VL +GV  WS++
Sbjct: 123 MSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIA 182

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T+LTP AA      LL VRAF G+ EGVAMPAM+ + S+W P  ER+ ++ +   G +LG
Sbjct: 183 TILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLG 242

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           +V GL  +P ++   G    F  F SLG +WL+ W +K  + P   P +   E +LI   
Sbjct: 243 SVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPEERKLIADN 302

Query: 181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
            +     ++ P  R +LSK P W +I  +  +NWG F+LL+WMP Y++ V   NL ++  
Sbjct: 303 CASKEPVKSIP-WRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGL 361

Query: 241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
            S  PW TMA+S    G  +D+L+  G+S+T VRKIMQ+IGF+GP   L  L +  SP +
Sbjct: 362 LSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTM 421

Query: 301 AAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWL 360
           A + +  +    +FSQ+G   N Q+IAP  +G L G++N+AG LA ++ T  TG+ +Q  
Sbjct: 422 AVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQ-H 480

Query: 361 GSFQAFLTVTAGLYFVTTIFWNLYSTGERV 390
           GS+    T++ GLY V T+ WNL+STGE++
Sbjct: 481 GSWDDVFTISVGLYLVGTVIWNLFSTGEKI 510

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  317 bits (813), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 162/394 (41%), Positives = 246/394 (62%), Gaps = 8/394 (2%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MS+A++P++ ++ WSS+ +G++QSSF WGY+ + ++GG   DK+GGK VL +GV  WS +
Sbjct: 152 MSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFA 211

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T++TP AA      LL VRAF G+ EGVAMPAM+ + S+W P  ER+ ++ +   G +LG
Sbjct: 212 TIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLG 271

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           +V GL  +P++++  G    F  F SLG +W   W     + P + P +S+ E ++I  G
Sbjct: 272 SVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGG 331

Query: 181 KSDSVKKRNPPSL---RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
                K R P ++   + +LSK P W +II++  +NWG F+LL+WMP Y+N V   NL +
Sbjct: 332 S----KPREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE 387

Query: 238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
           +     +PW TMAV   + G  +D+L+  G S+T VRKIMQSIGF+GP   L  L++ K+
Sbjct: 388 SGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKT 447

Query: 298 PAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFV 357
           PA+A + +  +    +FSQ+G   N Q+I P  AG L G++N+AG LA +  T  TGY +
Sbjct: 448 PAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL 507

Query: 358 QWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           Q  GS+     V   LY + T+ WNL++TGE++ 
Sbjct: 508 Q-RGSWDDVFKVAVALYLIGTLVWNLFATGEKIL 540

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 208/400 (52%), Gaps = 22/400 (5%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           +S+A++P++ +FGWSSS  G+VQSSF WGY  S + GG L   +GG+KVL  GV  WS +
Sbjct: 119 LSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLSKIFGGRKVLEIGVFTWSFA 178

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T L P  A      L+  R   G+ EGV+  A + L +R  P  ER+ A+G   GG  LG
Sbjct: 179 TALVPLLAGF-MPGLIFSRILVGIGEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLG 237

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           +V+GLLL P ++ T      F LF  LG+ W       V     N   VS     +  + 
Sbjct: 238 SVMGLLLAPPIIETFNWESVFYLFGLLGVGWF------VGFQFLNEEEVSYKGNEISTSH 291

Query: 181 KSDSVKKRNPPSLRHLLSKLP---------SWTVIIANITNNWGYFVLLSWMPIYFNTVF 231
           KS++  K     L   L ++P          W +I  +   +WG++  LSW+P YF+   
Sbjct: 292 KSENATKEE---LGSSLKEIPWKSFFQSPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEAL 348

Query: 232 NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV--SL 289
           ++NL +AAW S +P     V   +A + +D LI  G   T VRKI Q+I F+ P +  +L
Sbjct: 349 SLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTTVRKICQTIAFVAPAICMTL 408

Query: 290 LCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIIS 349
             ++    P     ++T  L+LSSF+ +G     Q+I+P+ A  L GI N+ G +  I+ 
Sbjct: 409 SSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVG 468

Query: 350 TIGTGYFVQWLGSFQAFLTVTAGLYFVT-TIFWNLYSTGE 388
              TG+ +    S+   L V +  +++T T+ W  +++ E
Sbjct: 469 VALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLAFASSE 508

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MZD1|S17A5_SHEEP Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1

 Score =  182 bits (462), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 194/382 (50%), Gaps = 4/382 (1%)

Query: 11  KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH 70
           K+ W +   G +  SF +GYI + + GG +  + GGK +L +G+   ++ TL TP AA  
Sbjct: 100 KYRWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGIFATAIFTLFTPLAADF 159

Query: 71  STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI 130
              +L+A+RA  GL EGV  PAM  + S W P  ER+  + I   G  LG VV L L+ +
Sbjct: 160 GVGALVALRALEGLGEGVTYPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGV 219

Query: 131 MLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP 190
           +   +  +  F  F  +G++W   W   V++ P     ++  E   I +   + +  +  
Sbjct: 220 ICYYMNWTYVFYFFGIVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQLSSQKS 279

Query: 191 PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA 250
                +L  LP W +++A+ + NW ++ LL+ +P Y   V   N+++  + SAVP+    
Sbjct: 280 VPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLGCW 339

Query: 251 VSGYMAGKASDSL-IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP-AVAAVLITIA 308
           +   ++G+A+D+L  +  +S   VR++   IG IGP + L+   +     ++A   +TI+
Sbjct: 340 LCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYSLAVAFLTIS 399

Query: 309 LSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFV--QWLGSFQAF 366
            +L  F  +G+ +N  +IAP  AG L GI N+  T+  +I  I          +G +Q  
Sbjct: 400 TTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPIIARSLTPENTIGEWQTV 459

Query: 367 LTVTAGLYFVTTIFWNLYSTGE 388
             + A +     IF+ L++ GE
Sbjct: 460 FCIAAAINVFGAIFFTLFAKGE 481

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes (Probable). Receptor for CM101, a polysaccharide produced by group B Streptococcus with antipathoangiogenic properties.

Ovis aries (taxid: 9940)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
224140369	419	predicted protein [Populus trichocarpa]	1.0	0.933	0.854	0.0
255573881	501	Sialin, putative [Ricinus communis] gi|2	1.0	0.780	0.849	0.0
42569720	512	putative anion transporter 3 [Arabidopsi	1.0	0.763	0.789	1e-179
449439924	518	PREDICTED: probable anion transporter 3,	1.0	0.754	0.772	1e-175
297827359	517	hypothetical protein ARALYDRAFT_482813 [	1.0	0.756	0.789	1e-174
356520987	504	PREDICTED: probable anion transporter 3,	1.0	0.775	0.770	1e-171
225440612	507	PREDICTED: probable anion transporter 3,	1.0	0.771	0.778	1e-169
297740248	405	unnamed protein product [Vitis vinifera]	1.0	0.965	0.778	1e-169
115464211	535	Os05g0451100 [Oryza sativa Japonica Grou	1.0	0.730	0.688	1e-156
222631794	443	hypothetical protein OsJ_18751 [Oryza sa	1.0	0.882	0.688	1e-156

>gi|224140369|ref|XP_002323555.1| predicted protein [Populus trichocarpa] gi|222868185|gb|EEF05316.1| predicted protein [Populus trichocarpa]

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/392 (85%), Positives = 361/392 (92%), Gaps = 1/392 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSV VVPLA KFGWSSSFLGIVQSSFLWGYIFSSVIGG LVD+YGGK+V+AWGVALWSL+
Sbjct: 28  MSVTVVPLATKFGWSSSFLGIVQSSFLWGYIFSSVIGGVLVDRYGGKRVMAWGVALWSLA 87

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAA HST +LLAVRAFFGLAEGVA+P+MSTL+SRWFP+HERASA+GI M GFHLG
Sbjct: 88  TLLTPWAANHSTVALLAVRAFFGLAEGVALPSMSTLSSRWFPTHERASAVGISMAGFHLG 147

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV+GLLLTPIMLST+GISGPFILFSSLGLLWL+ W + VT+DP +SPFVSKSELRLIQAG
Sbjct: 148 NVIGLLLTPIMLSTVGISGPFILFSSLGLLWLTRWANGVTSDPRDSPFVSKSELRLIQAG 207

Query: 181 KSDSVKKRNP-PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           K+DS       P LR LLSK PSW +I ANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA
Sbjct: 208 KTDSPASDGQFPPLRLLLSKAPSWAIIFANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 267

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSAVPWGTMAVSGY+AG  SDSLIKAGYSLT+VRKIMQSIGFIGPGVSLLCLNYAK+P 
Sbjct: 268 WFSAVPWGTMAVSGYVAGALSDSLIKAGYSLTIVRKIMQSIGFIGPGVSLLCLNYAKTPV 327

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW 359
            AA L+TIALSLSSFSQAG+LLN+Q+IAP  AGFLHGIANSAGTLAAIISTIGTGYFVQW
Sbjct: 328 TAAALMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGIANSAGTLAAIISTIGTGYFVQW 387

Query: 360 LGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           LGSFQAFLTVTAGLYFVT IFWNLY+TGERVF
Sbjct: 388 LGSFQAFLTVTAGLYFVTAIFWNLYATGERVF 419

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573881|ref|XP_002527859.1| Sialin, putative [Ricinus communis] gi|223532710|gb|EEF34490.1| Sialin, putative [Ricinus communis]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/392 (84%), Positives = 362/392 (92%), Gaps = 1/392 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVPLAAK+GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGK+VLAWGV LWSL+
Sbjct: 110 MSVAVVPLAAKYGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKRVLAWGVGLWSLA 169

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAA HSTASLLAVRAFFGLAEGVA+P+MSTL SRWFP++ERASAIG+ M GFHLG
Sbjct: 170 TLLTPWAANHSTASLLAVRAFFGLAEGVALPSMSTLLSRWFPTNERASAIGLSMAGFHLG 229

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV GLLLTPIMLSTIGI+GPFILFSSLGLLW+S WT+ VT+DP +SPFVSKSELRLIQAG
Sbjct: 230 NVAGLLLTPIMLSTIGIAGPFILFSSLGLLWVSRWTNGVTSDPRDSPFVSKSELRLIQAG 289

Query: 181 KSDS-VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           K+DS   K   P LR L SKLP+W +I AN+TNNWGYFVLLSWMP+YF TVFNVNLKQAA
Sbjct: 290 KTDSSTNKGQLPPLRLLFSKLPTWAIIFANVTNNWGYFVLLSWMPVYFKTVFNVNLKQAA 349

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSAVPWGTMAVSGY+AG ASD LIKAGYSLTLVRK+MQSIGFIGPGVSLLCLNYAK+P 
Sbjct: 350 WFSAVPWGTMAVSGYIAGAASDFLIKAGYSLTLVRKVMQSIGFIGPGVSLLCLNYAKTPV 409

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW 359
            AA+ IT ALSLSSFSQAG+LLN+Q+IAP  AGFLHGIANSAGTLAAI+STIGTGYFVQW
Sbjct: 410 TAAIFITAALSLSSFSQAGFLLNMQDIAPQYAGFLHGIANSAGTLAAIVSTIGTGYFVQW 469

Query: 360 LGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           LGSFQAFLTVTAGLYF+TTIFW +Y+TGERVF
Sbjct: 470 LGSFQAFLTVTAGLYFITTIFWIMYATGERVF 501

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569720|ref|NP_181341.2| putative anion transporter 3 [Arabidopsis thaliana] gi|187470894|sp|Q7XJR2.2|ANTR3_ARATH RecName: Full=Probable anion transporter 3, chloroplastic; AltName: Full=Phosphate transporter PHT4;2; Flags: Precursor gi|330254391|gb|AEC09485.1| putative anion transporter 3 [Arabidopsis thaliana]

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 311/394 (78%), Positives = 355/394 (90%), Gaps = 3/394 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVPLA K GWSSSFLG+VQSSFLWGYIFSSVIGGALVD+YGGK+VLAWGVALWSL+
Sbjct: 119 MSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLA 178

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAA HST +LL VRAFFGLAEGVAMP+M+TL SRWFP  ERASA+GI M GFH+G
Sbjct: 179 TLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMG 238

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NVVGLLLTP+MLS+IGISGPFILF+SLGLLW+STW+S VTN+P +SPF+++SELRLIQAG
Sbjct: 239 NVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAG 298

Query: 181 KS---DSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
           K     ++  +  PSLR LLSKLP+W +I AN+TNNWGYFVLLSWMP+YF TVFNVNLKQ
Sbjct: 299 KPVQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQ 358

Query: 238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
           AAWFSA+PW TMA+SGY AG ASD LI+ G+S+T VRKIMQSIGF+GPG+SLLCLN+AKS
Sbjct: 359 AAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKS 418

Query: 298 PAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFV 357
           P+ AAV +TIALSLSSFSQAG+LLN+Q+IAP  AGFLHGI+N AGTLAAI+STIGTGYFV
Sbjct: 419 PSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFV 478

Query: 358 QWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           QWLGSFQAFLTVTA LYF TT+FW L++TGERVF
Sbjct: 479 QWLGSFQAFLTVTAFLYFATTVFWLLFATGERVF 512

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439924|ref|XP_004137735.1| PREDICTED: probable anion transporter 3, chloroplastic-like [Cucumis sativus] gi|449483449|ref|XP_004156595.1| PREDICTED: probable anion transporter 3, chloroplastic-like [Cucumis sativus]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 303/392 (77%), Positives = 352/392 (89%), Gaps = 1/392 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPLAAK+GWSSSFLGIVQSSFLWGYIFSSV+GGALVD+YGGK+V+AWGVALWSL+
Sbjct: 127 MSVAIVPLAAKYGWSSSFLGIVQSSFLWGYIFSSVVGGALVDRYGGKRVMAWGVALWSLA 186

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTP AA HST SLLA+RAFFGLAEGVA+P+MSTL SRWFP HERASA+G+ M GFHLG
Sbjct: 187 TLLTPLAANHSTTSLLAIRAFFGLAEGVALPSMSTLLSRWFPGHERASAVGMSMAGFHLG 246

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV+GLLLTPIMLS+IG++GPF+LFSSLGL+WL++W   VTN+P +S  +S SELRLI+AG
Sbjct: 247 NVIGLLLTPIMLSSIGVTGPFLLFSSLGLVWLTSWIPGVTNNPRDSQNISTSELRLIEAG 306

Query: 181 KSDSVKKRNPP-SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           K DS +       L  LLSKLP+W +I AN+TNNWGYFVLLSWMP+YF TVFNVNLKQAA
Sbjct: 307 KVDSSRHNATHLPLSRLLSKLPTWAIIFANMTNNWGYFVLLSWMPVYFKTVFNVNLKQAA 366

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSA+PWGTMAVSGY AG  SD+LIK+GY +TLVRKIMQSIGFIGPG+ LLCLN+A +P 
Sbjct: 367 WFSAIPWGTMAVSGYFAGTMSDALIKSGYPVTLVRKIMQSIGFIGPGLGLLCLNFATTPT 426

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW 359
           VAAVL+T+ALSLSSFSQAG+LLN+Q+IAP  AGFLHGI+NSAGTLAAI+STIGTGYFV+W
Sbjct: 427 VAAVLMTVALSLSSFSQAGFLLNMQDIAPQHAGFLHGISNSAGTLAAIVSTIGTGYFVEW 486

Query: 360 LGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           LGSFQAFLTVTA +YF+  IFWNL++TGE+VF
Sbjct: 487 LGSFQAFLTVTAMVYFMAAIFWNLFATGEQVF 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827359|ref|XP_002881562.1| hypothetical protein ARALYDRAFT_482813 [Arabidopsis lyrata subsp. lyrata] gi|297327401|gb|EFH57821.1| hypothetical protein ARALYDRAFT_482813 [Arabidopsis lyrata subsp. lyrata]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 311/394 (78%), Positives = 356/394 (90%), Gaps = 3/394 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVPLA K GWSSSFLG+VQSSFLWGYIFSSVIGGALVD+YGGK+VLAWGVALWSL+
Sbjct: 124 MSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLA 183

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAA HST +LL VRAFFGLAEGVA+P+M+TL SRWFP+ ERASA+GI M GFH+G
Sbjct: 184 TLLTPWAAAHSTLALLCVRAFFGLAEGVALPSMTTLLSRWFPTDERASAVGISMAGFHMG 243

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NVVGLLLTP++LS+IGISGPFILF+SLGLLW+STW+S VTN+P +SPF+++SELRLIQAG
Sbjct: 244 NVVGLLLTPLLLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAG 303

Query: 181 K--SDSVKKRNP-PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
           K    S     P PSLR LLSKLP+W +I+AN+TNNWGYFVLLSWMP+YF TVFNVNLKQ
Sbjct: 304 KPVQPSTNSTKPNPSLRLLLSKLPTWAIILANVTNNWGYFVLLSWMPVYFQTVFNVNLKQ 363

Query: 238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
           AAWFSA+PW TMA+SGY AG ASD LI+ G+S+T VRKIMQSIGF+GPG+SLLCLN+AKS
Sbjct: 364 AAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKS 423

Query: 298 PAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFV 357
           P+ AAV +TIALSLSSFSQAG+LLN+Q+IAP  AGFLHGI+N AGTLAAI+STIGTGYFV
Sbjct: 424 PSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFV 483

Query: 358 QWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           QWLGSFQAFLTVTA LYF TT+FW L++TGERVF
Sbjct: 484 QWLGSFQAFLTVTAFLYFATTVFWILFATGERVF 517

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520987|ref|XP_003529140.1| PREDICTED: probable anion transporter 3, chloroplastic-like [Glycine max]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 302/392 (77%), Positives = 344/392 (87%), Gaps = 1/392 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPLAAK GWS+SFLGIVQSSFLWGYIFSSVIGGALVD+YGGK+VLA GV +WSL+
Sbjct: 113 MSVAIVPLAAKHGWSNSFLGIVQSSFLWGYIFSSVIGGALVDRYGGKRVLACGVFMWSLA 172

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T+LTP AA HST SLLA+RAFFGLAEGVA P+MSTL SRWFP++ERASA+G+ M GFHLG
Sbjct: 173 TILTPLAANHSTVSLLAIRAFFGLAEGVAFPSMSTLLSRWFPTNERASALGMSMAGFHLG 232

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV+GLLLTPIMLST+GISGPFILFSSLGLLW+ TW  +VT+DP  S F+S+ E RLIQAG
Sbjct: 233 NVIGLLLTPIMLSTMGISGPFILFSSLGLLWVITWAYRVTDDPTESNFISRLEQRLIQAG 292

Query: 181 KSDSVKKRNP-PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           K+ S KK N  P +R LLSKLPSW +I AN TNNWGYFVLLSWMP+YF +V+NVNLKQAA
Sbjct: 293 KTGSPKKSNKFPPIRLLLSKLPSWAIIFANATNNWGYFVLLSWMPVYFKSVYNVNLKQAA 352

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSAVPW TMA+SGY+AG ASD LI AGY    VRK MQ+IGFIGP V+LLCLNYA +PA
Sbjct: 353 WFSAVPWATMAMSGYLAGVASDFLINAGYPTIFVRKFMQTIGFIGPAVTLLCLNYANTPA 412

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW 359
           VAA L+TIALSLSSFSQAG++LNIQ+IAP  AG LHGI+N AGT+AAIISTIGTGYFVQW
Sbjct: 413 VAATLMTIALSLSSFSQAGFMLNIQDIAPQYAGILHGISNCAGTIAAIISTIGTGYFVQW 472

Query: 360 LGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           LGSFQAFLT+TA LYFVTTIFWNL++T E++ 
Sbjct: 473 LGSFQAFLTITACLYFVTTIFWNLFATSEQIL 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440612|ref|XP_002273820.1| PREDICTED: probable anion transporter 3, chloroplastic-like [Vitis vinifera]

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 305/392 (77%), Positives = 345/392 (88%), Gaps = 1/392 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPLAA+ GWSSSFLGIVQSSFLWGY+FSSVIGG LVD+YGGKKV+A GVALWSL+
Sbjct: 115 MSVAIVPLAAEHGWSSSFLGIVQSSFLWGYVFSSVIGGVLVDRYGGKKVMACGVALWSLA 174

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAATHST SLLAVRAFFGLAEGVA+PAMSTL SRWFP +ERASA+GI M GFHLG
Sbjct: 175 TLLTPWAATHSTLSLLAVRAFFGLAEGVALPAMSTLVSRWFPINERASAVGISMAGFHLG 234

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV GLL+TPI++S+IGISGPF+LFSSLGLLWL+ W    T+DP  S  +S+SELRLIQAG
Sbjct: 235 NVTGLLVTPIVISSIGISGPFVLFSSLGLLWLTMWGYGATSDPRESHLISQSELRLIQAG 294

Query: 181 KSDSVKKRNP-PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           K++S  +      LR LLSKLP+W +I ANITNNWGYFVLLSWMP+YF +VF++NLKQAA
Sbjct: 295 KTESSARNGKFLPLRLLLSKLPTWAIIFANITNNWGYFVLLSWMPVYFKSVFDINLKQAA 354

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSA PWG MA+SGY+AG  SD LIK GY LTLVRKIMQSIGFIGPGVSLLCLN+AK+P 
Sbjct: 355 WFSAAPWGMMAISGYIAGVVSDYLIKVGYPLTLVRKIMQSIGFIGPGVSLLCLNHAKTPV 414

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW 359
            AA+ +T  LSLSSFSQAG+LLN+Q+IAP  AGFLHGI+NSAGTLAAI+STIGTGYFVQW
Sbjct: 415 TAAMFLTAGLSLSSFSQAGFLLNMQDIAPQYAGFLHGISNSAGTLAAIVSTIGTGYFVQW 474

Query: 360 LGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           LGSFQAFLTVTA LYF TTIFWN ++TGERVF
Sbjct: 475 LGSFQAFLTVTALLYFATTIFWNAFATGERVF 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740248|emb|CBI30430.3| unnamed protein product [Vitis vinifera]

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 305/392 (77%), Positives = 345/392 (88%), Gaps = 1/392 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPLAA+ GWSSSFLGIVQSSFLWGY+FSSVIGG LVD+YGGKKV+A GVALWSL+
Sbjct: 13  MSVAIVPLAAEHGWSSSFLGIVQSSFLWGYVFSSVIGGVLVDRYGGKKVMACGVALWSLA 72

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAATHST SLLAVRAFFGLAEGVA+PAMSTL SRWFP +ERASA+GI M GFHLG
Sbjct: 73  TLLTPWAATHSTLSLLAVRAFFGLAEGVALPAMSTLVSRWFPINERASAVGISMAGFHLG 132

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV GLL+TPI++S+IGISGPF+LFSSLGLLWL+ W    T+DP  S  +S+SELRLIQAG
Sbjct: 133 NVTGLLVTPIVISSIGISGPFVLFSSLGLLWLTMWGYGATSDPRESHLISQSELRLIQAG 192

Query: 181 KSDSVKKRNP-PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           K++S  +      LR LLSKLP+W +I ANITNNWGYFVLLSWMP+YF +VF++NLKQAA
Sbjct: 193 KTESSARNGKFLPLRLLLSKLPTWAIIFANITNNWGYFVLLSWMPVYFKSVFDINLKQAA 252

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSA PWG MA+SGY+AG  SD LIK GY LTLVRKIMQSIGFIGPGVSLLCLN+AK+P 
Sbjct: 253 WFSAAPWGMMAISGYIAGVVSDYLIKVGYPLTLVRKIMQSIGFIGPGVSLLCLNHAKTPV 312

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW 359
            AA+ +T  LSLSSFSQAG+LLN+Q+IAP  AGFLHGI+NSAGTLAAI+STIGTGYFVQW
Sbjct: 313 TAAMFLTAGLSLSSFSQAGFLLNMQDIAPQYAGFLHGISNSAGTLAAIVSTIGTGYFVQW 372

Query: 360 LGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           LGSFQAFLTVTA LYF TTIFWN ++TGERVF
Sbjct: 373 LGSFQAFLTVTALLYFATTIFWNAFATGERVF 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115464211|ref|NP_001055705.1| Os05g0451100 [Oryza sativa Japonica Group] gi|75270188|sp|Q53WP9.1|PHT42_ORYSJ RecName: Full=Probable anion transporter 2, chloroplastic; AltName: Full=Phosphate transporter 4;2; Flags: Precursor gi|55733842|gb|AAV59349.1| putative anion/sugar transporter [Oryza sativa Japonica Group] gi|113579256|dbj|BAF17619.1| Os05g0451100 [Oryza sativa Japonica Group]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/392 (68%), Positives = 328/392 (83%), Gaps = 1/392 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVP AA++GWSSSFLGIVQSSFLWGY+FSS++GGAL D+YGGKKV+A   ALWSL+
Sbjct: 143 MSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVMAGAAALWSLA 202

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T LTPWAA+ ST  LLA+RA FGLAEGVA P MST   +WFP+HERA+A+GI MGGFHLG
Sbjct: 203 TFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTFLPKWFPTHERATAVGISMGGFHLG 262

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV+  L TPI++S IG++G F  F+SLG LWLS W   V +DP +S  +SKSEL+LI AG
Sbjct: 263 NVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWLFNVESDPLDSRTISKSELQLILAG 322

Query: 181 KSDS-VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           +S S ++    PSLR +LSK+  W +I+AN+ NNWGYFVLLSWMP+YF TV+NVNLKQAA
Sbjct: 323 RSASKIQGSKFPSLREILSKIEMWAIIVANVVNNWGYFVLLSWMPVYFKTVYNVNLKQAA 382

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSA+PW  MA+SGY+AG ++D LIK+G+S+ LVRKIMQSIGFIGPGVSLLCL +A++P+
Sbjct: 383 WFSAIPWAVMALSGYVAGASADFLIKSGFSVALVRKIMQSIGFIGPGVSLLCLRFAQTPS 442

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW 359
           VAAVL+TIALSLSSFSQAGY  N+Q+IAP  AG LHG+ N  GT+AAI+STIGTGYFVQW
Sbjct: 443 VAAVLMTIALSLSSFSQAGYFCNVQDIAPKYAGSLHGLTNGIGTVAAIVSTIGTGYFVQW 502

Query: 360 LGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           LGSFQAFLT+TA LYF  T+F+N Y+TG+ +F
Sbjct: 503 LGSFQAFLTLTAVLYFSATVFYNTYATGDLIF 534

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222631794|gb|EEE63926.1| hypothetical protein OsJ_18751 [Oryza sativa Japonica Group]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/392 (68%), Positives = 328/392 (83%), Gaps = 1/392 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVP AA++GWSSSFLGIVQSSFLWGY+FSS++GGAL D+YGGKKV+A   ALWSL+
Sbjct: 51  MSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVMAGAAALWSLA 110

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T LTPWAA+ ST  LLA+RA FGLAEGVA P MST   +WFP+HERA+A+GI MGGFHLG
Sbjct: 111 TFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTFLPKWFPTHERATAVGISMGGFHLG 170

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV+  L TPI++S IG++G F  F+SLG LWLS W   V +DP +S  +SKSEL+LI AG
Sbjct: 171 NVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWLFNVESDPLDSRTISKSELQLILAG 230

Query: 181 KSDS-VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           +S S ++    PSLR +LSK+  W +I+AN+ NNWGYFVLLSWMP+YF TV+NVNLKQAA
Sbjct: 231 RSASKIQGSKFPSLREILSKIEMWAIIVANVVNNWGYFVLLSWMPVYFKTVYNVNLKQAA 290

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSA+PW  MA+SGY+AG ++D LIK+G+S+ LVRKIMQSIGFIGPGVSLLCL +A++P+
Sbjct: 291 WFSAIPWAVMALSGYVAGASADFLIKSGFSVALVRKIMQSIGFIGPGVSLLCLRFAQTPS 350

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW 359
           VAAVL+TIALSLSSFSQAGY  N+Q+IAP  AG LHG+ N  GT+AAI+STIGTGYFVQW
Sbjct: 351 VAAVLMTIALSLSSFSQAGYFCNVQDIAPKYAGSLHGLTNGIGTVAAIVSTIGTGYFVQW 410

Query: 360 LGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
           LGSFQAFLT+TA LYF  T+F+N Y+TG+ +F
Sbjct: 411 LGSFQAFLTLTAVLYFSATVFYNTYATGDLIF 442

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	1.0	0.763	0.763	1.7e-162
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.992	0.757	0.397	3.2e-81
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.984	0.711	0.399	5.2e-81
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.974	0.736	0.335	3.8e-53
UNIPROTKB|E2RM55	437	SLC17A9 "Uncharacterized prote	0.496	0.443	0.328	1.6e-47
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.966	0.780	0.303	5.4e-47
UNIPROTKB|Q9BYT1	436	SLC17A9 "Solute carrier family	0.918	0.823	0.312	2.1e-45
FB|FBgn0028513	481	CG9254 [Drosophila melanogaste	0.961	0.781	0.284	2.7e-45
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.966	0.763	0.282	3.4e-45
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.966	0.760	0.296	5.6e-45

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1582 (562.0 bits), Expect = 1.7e-162, P = 1.7e-162
 Identities = 301/394 (76%), Positives = 342/394 (86%)

Query:     1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
             MSVAVVPLA K GWSSSFLG+VQSSFLWGYIFSSVIGGALVD+YGGK+VLAWGVALWSL+
Sbjct:   119 MSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLA 178

Query:    61 TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
             TLLTPWAA HST +LL VRAFFGLAEGVAMP+M+TL SRWFP  ERASA+GI M GFH+G
Sbjct:   179 TLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMG 238

Query:   121 NVVGLLLTPIMLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAG 180
             NVVGLLLTP+MLS+IGISGPFILF              VTN+P +SPF+++SELRLIQAG
Sbjct:   239 NVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAG 298

Query:   181 KS---DSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
             K     ++  +  PSLR LLSKLP+W +I AN+TNNWGYFVLLSWMP+YF TVFNVNLKQ
Sbjct:   299 KPVQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQ 358

Query:   238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
             AAWFSA+PW TMA+SGY AG ASD LI+ G+S+T VRKIMQSIGF+GPG+SLLCLN+AKS
Sbjct:   359 AAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKS 418

Query:   298 PAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFV 357
             P+ AAV +TIALSLSSFSQAG+LLN+Q+IAP  AGFLHGI+N AGTLAAI+STIGTGYFV
Sbjct:   419 PSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFV 478

Query:   358 QWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF 391
             QWLGSFQAFLTVTA LYF TT+FW L++TGERVF
Sbjct:   479 QWLGSFQAFLTVTAFLYFATTVFWLLFATGERVF 512

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 155/390 (39%), Positives = 235/390 (60%)

Query:     1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
             MS+A++P++A++GW+ + +G++QSSF WGY+ + + GG   D  GGK+VL +GV  WS++
Sbjct:   123 MSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIA 182

Query:    61 TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
             T+LTP AA      LL VRAF G+ EGVAMPAM+ + S+W P  ER+ ++ +   G +LG
Sbjct:   183 TILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLG 242

Query:   121 NVVGLLLTPIMLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAG 180
             +V GL  +P ++   G    F  F             K  + P   P +   E +LI   
Sbjct:   243 SVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPEERKLIADN 302

Query:   181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
              +     ++ P  R +LSK P W +I  +  +NWG F+LL+WMP Y++ V   NL ++  
Sbjct:   303 CASKEPVKSIP-WRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGL 361

Query:   241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
              S  PW TMA+S    G  +D+L+  G+S+T VRKIMQ+IGF+GP   L  L +  SP +
Sbjct:   362 LSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTM 421

Query:   301 AAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWL 360
             A + +  +    +FSQ+G   N Q+IAP  +G L G++N+AG LA ++ T  TG+ +Q  
Sbjct:   422 AVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQH- 480

Query:   361 GSFQAFLTVTAGLYFVTTIFWNLYSTGERV 390
             GS+    T++ GLY V T+ WNL+STGE++
Sbjct:   481 GSWDDVFTISVGLYLVGTVIWNLFSTGEKI 510

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 157/393 (39%), Positives = 240/393 (61%)

Query:     1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
             MS+A++P++ ++ WSS+ +G++QSSF WGY+ + ++GG   DK+GGK VL +GV  WS +
Sbjct:   152 MSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFA 211

Query:    61 TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
             T++TP AA      LL VRAF G+ EGVAMPAM+ + S+W P  ER+ ++ +   G +LG
Sbjct:   212 TIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLG 271

Query:   121 NVVGLLLTPIMLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAG 180
             +V GL  +P++++  G    F  F                + P + P +S+ E ++I  G
Sbjct:   272 SVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGG 331

Query:   181 KSDSVKKRNPPSL---RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
                  K R P ++   + +LSK P W +II++  +NWG F+LL+WMP Y+N V   NL +
Sbjct:   332 S----KPREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE 387

Query:   238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
             +     +PW TMAV   + G  +D+L+  G S+T VRKIMQSIGF+GP   L  L++ K+
Sbjct:   388 SGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKT 447

Query:   298 PAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFV 357
             PA+A + +  +    +FSQ+G   N Q+I P  AG L G++N+AG LA +  T  TGY +
Sbjct:   448 PAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL 507

Query:   358 QWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERV 390
             Q  GS+     V   LY + T+ WNL++TGE++
Sbjct:   508 Q-RGSWDDVFKVAVALYLIGTLVWNLFATGEKI 539

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 133/397 (33%), Positives = 205/397 (51%)

Query:     1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
             +S+A++P++ +FGWSSS  G+VQSSF WGY  S + GG L   +GG+KVL  GV  WS +
Sbjct:   119 LSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLSKIFGGRKVLEIGVFTWSFA 178

Query:    61 TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
             T L P  A      L+  R   G+ EGV+  A + L +R  P  ER+ A+G   GG  LG
Sbjct:   179 TALVPLLAGFMPG-LIFSRILVGIGEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLG 237

Query:   121 NVVGLLLTPIMLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAG 180
             +V+GLLL P ++ T      F LF                    N   VS     +  + 
Sbjct:   238 SVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQF------LNEEEVSYKGNEISTSH 291

Query:   181 KSDSVKKRN-PPSLRHLLSKL----PS-WTVIIANITNNWGYFVLLSWMPIYFNTVFNVN 234
             KS++  K     SL+ +  K     P+ W +I  +   +WG++  LSW+P YF+   ++N
Sbjct:   292 KSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEALSLN 351

Query:   235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV--SLLCL 292
             L +AAW S +P     V   +A + +D LI  G   T VRKI Q+I F+ P +  +L  +
Sbjct:   352 LTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTTVRKICQTIAFVAPAICMTLSSV 411

Query:   293 NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIG 352
             +    P     ++T  L+LSSF+ +G     Q+I+P+ A  L GI N+ G +  I+    
Sbjct:   412 DIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVAL 471

Query:   353 TGYFVQWLGSFQAFLTVTAGLYFVT-TIFWNLYSTGE 388
             TG+ +    S+   L V +  +++T T+ W  +++ E
Sbjct:   472 TGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLAFASSE 508

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|E2RM55 SLC17A9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 308 (113.5 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
 Identities = 65/198 (32%), Positives = 102/198 (51%)

Query:   194 RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW-FSAVPWGTMAVS 252
             R L  K   W  I + +++   +F+LLSW+P +F   F        W F+ VPW     +
Sbjct:   234 RQLFRKPSVWAAISSQLSSACSFFILLSWLPTFFQETFP---SSKGWVFNVVPWLVAIPA 290

Query:   253 GYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS 312
                +G  SD LI  GY    VRK MQ +G     V  LCL +  S   + V  + ++ L 
Sbjct:   291 SLFSGFLSDHLINQGYRTIAVRKFMQVMGLGLSSVFALCLGHTSSFCKSVVFASASIGLQ 350

Query:   313 SFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAG 372
             +F+ +G  +NIQ++AP CAGFL G+AN+AG LA ++     GY ++  GS+ +   + A 
Sbjct:   351 TFNHSGISVNIQDLAPSCAGFLFGVANTAGALAGVVGVCLGGYLIETTGSWTSMFNLVAA 410

Query:   373 LYFVTTIFWNLYSTGERV 390
             +  +    + L+   +RV
Sbjct:   411 ISGLGLCTFLLFGEAQRV 428

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 116/382 (30%), Positives = 188/382 (49%)

Query:    11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH 70
             K+ W +   G +  SF +GYI + + GG L  K GGK +L +G+   S+ TLLTP AA  
Sbjct:    89 KYSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAADL 148

Query:    71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI 130
                 L+AVRA  GL EGV  PAM ++ S W P  ER+  + I   G  LG VV L L+ +
Sbjct:   149 GVGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGL 208

Query:   131 MLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP 190
             +   +     F +F              V++ P     +S+ E   I +   D +  +  
Sbjct:   209 ICYYMNWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYILSSLKDQLSTQKS 268

Query:   191 PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA 250
                R +L  LP W +++A+ + NW ++ LL+ +P Y   +   + ++  + SA+P+    
Sbjct:   269 VPWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSALPYFGCW 328

Query:   251 VSGYMAGKASDSLI-KAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVLITIA 308
             +   ++G+ +D L  K  +S   VRK    IG IGP V L+   +   +  +A   +TI+
Sbjct:   329 LCIILSGQIADHLREKQNFSTVCVRKCFTLIGMIGPAVFLVAAGFIGCNYELAVAFVTIS 388

Query:   309 LSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQ--WLGSFQAF 366
              +L  F  +GY +N  +IAP  AG L GI NS  T+  ++  +          +G +Q  
Sbjct:   389 TTLGGFCTSGYSINHLDIAPSYAGILLGITNSFATIPGMVGPVIAKNLTHNNTVGEWQTV 448

Query:   367 LTVTAGLYFVTTIFWNLYSTGE 388
               + A +     IF+ L+++GE
Sbjct:   449 FYIAASINLFGAIFFALFASGE 470

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|Q9BYT1 SLC17A9 "Solute carrier family 17 member 9" [Homo sapiens (taxid:9606)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 118/377 (31%), Positives = 181/377 (48%)

Query:     1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
             M +  V ++  FGW+    GIV SSF WGY  + V+GG L D+ GG+KV+    + W   
Sbjct:    44 MPICTVSMSQDFGWNKKEAGIVLSSFFWGYCLTQVVGGHLGDRIGGEKVILLSASAWGSI 103

Query:    61 TLLTPWAATHSTASLLAV---RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGF 117
             T +TP  A  S+A L  +   R   GL +GV  PA+++L S+     ERA    I   G 
Sbjct:   104 TAVTPLLAHLSSAHLAFMTFSRILMGLLQGVYFPALTSLLSQKVRESERAFTYSIVGAGS 163

Query:   118 HLGNVVGLLLTPIMLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLI 177
               G ++   +  ++L   G    F  F             +          +S+ +L L 
Sbjct:   164 QFGTLLTGAVGSLLLEWYGWQSIFY-FSGGLTLLWVWYVYRY--------LLSEKDLILA 214

Query:   178 QA--GKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL 235
                  +S  V + N    R L  K   W  +++ ++    +F+LLSW+P +F   F  + 
Sbjct:   215 LGVLAQSRPVSRHNRVPWRRLFRKPAVWAAVVSQLSAACSFFILLSWLPTFFEETFP-DA 273

Query:   236 KQAAW-FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY 294
             K   W F+ VPW     +   +G  SD LI  GY    VRK+MQ +G     V  LCL +
Sbjct:   274 K--GWIFNVVPWLVAIPASLFSGFLSDHLINQGYRAITVRKLMQGMGLGLSSVFALCLGH 331

Query:   295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTG 354
               S   + V  + ++ L +F+ +G  +NIQ++AP CAGFL G+AN+AG LA ++     G
Sbjct:   332 TSSFCESVVFASASIGLQTFNHSGISVNIQDLAPSCAGFLFGVANTAGALAGVVGVCLGG 391

Query:   355 YFVQWLGSFQAFLTVTA 371
             Y ++  GS+     + A
Sbjct:   392 YLMETTGSWTCLFNLVA 408

GO:0005215 "transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0028513 CG9254 [Drosophila melanogaster (taxid:7227)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 109/383 (28%), Positives = 193/383 (50%)

Query:    12 FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS 71
             + WS    G++ +SF  GYI + + GG L DK+GGK  L+ G+   ++ TLLTP    + 
Sbjct:    83 YDWSQEKQGLILASFYIGYIVTHLPGGILADKFGGKWTLSLGIFFTAIFTLLTPVCIVYG 142

Query:    72 TA-SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI 130
              A +L+ +R   GL EG   PA+S L + W P++ER     + +GG  +G++ G +++  
Sbjct:   143 GADALIVLRVLMGLGEGTTFPALSVLLASWVPANERGMLGALVLGGGQMGSIAGNIISGY 202

Query:   131 MLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP 190
             +LS++     F +F                + P   P++ K E R   A +     K  P
Sbjct:   203 VLSSMDWPWVFYVFAIIALVWFVVFTLVCFSSPFTHPYI-KPEERAFLAQEVPPPDKNKP 261

Query:   191 PS-LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTM 249
              +    +L+ +P W +I A I ++WG+++++S++P Y + V   ++K    +S++P+ TM
Sbjct:   262 KTPFFAILTSIPMWALISAQIGHDWGFYIMVSYLPKYMSDVLRFSIKSNGLYSSLPYVTM 321

Query:   250 AVSGYMAGKASDSLIKAG-YSLTLVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVLITI 307
              +   ++G  +D +IK    S T  RKIM  +   GP V ++  +YA  +  +   L TI
Sbjct:   322 WIMSLLSGCVADQMIKRNCMSTTNTRKIMTGVAAFGPAVFMVAASYAGCNRGMVVALFTI 381

Query:   308 ALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQ--WLGSFQA 365
              + L     AG  L   +++P+ AG L  I N  G +  ++S    G       L  ++ 
Sbjct:   382 TMGLMGTYYAGMKLTPLDMSPNYAGTLMAITNGIGAITGVVSPYLVGVMTPNATLLEWRL 441

Query:   366 FLTVTAGLYFVTTIFWNLYSTGE 388
                V  G+  VT I + ++++G+
Sbjct:   442 VFWVAFGVLVVTAIVYCIWASGD 464

GO:0005436 "sodium:phosphate symporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 108/382 (28%), Positives = 188/382 (49%)

Query:    11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH 70
             ++ W +   G +  SF +GYI + + GG +  K GGK +L +G+   ++ TL TP AA  
Sbjct:   100 RYQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAADF 159

Query:    71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI 130
                +L+ +RA  GL EGV  PAM  + S W P  ER+  + I   G  LG V+ L L+ I
Sbjct:   160 GVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGI 219

Query:   131 MLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP 190
             +   +  +  F LF              V+  P     +S+ E   I +   + +  +  
Sbjct:   220 ICFYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQEKEYILSSLKNQLSSQKS 279

Query:   191 PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA 250
                  +L  LP W +++A+ + NW ++ LL+ +P Y   +   N+++    SA+P+    
Sbjct:   280 VPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALPYFGCW 339

Query:   251 VSGYMAGKASDSL-IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP-AVAAVLITIA 308
             +   ++G+A+D+L  K  +S   VR++   IG IGP V L+   +     ++A V +TI+
Sbjct:   340 LCMILSGQAADNLRAKWNFSTICVRRVFSLIGMIGPAVFLVAAGFIGCDYSLAVVFLTIS 399

Query:   309 LSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFV--QWLGSFQAF 366
              +L  F  +G+ +N  +IAP  AG L GI N+  T+  ++  +          +  +Q  
Sbjct:   400 TTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLTPDNTIREWQTV 459

Query:   367 LTVTAGLYFVTTIFWNLYSTGE 388
               + A +     IF++L++ GE
Sbjct:   460 FYIAAAINVFGAIFFSLFAKGE 481

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 114/384 (29%), Positives = 188/384 (48%)

Query:    11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH 70
             K+ W++   G +  SF +GYI + + GG +  + GGK +L +G+   S+ TLLTP AA  
Sbjct:   100 KYQWNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADF 159

Query:    71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMG--GFHLGNVVGLLLT 128
                +L+A+RA  GL EGV  PAM  + S W P  ER+  + I     G  LG VV L L+
Sbjct:   160 GVGALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLS 219

Query:   129 PIMLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKR 188
              I+   +  +  F LF              V++ P     +S  E   I +   + +  +
Sbjct:   220 GIICFYLNWTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYEKEYILSSLRNQLSSQ 279

Query:   189 NPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGT 248
                    +L  LP W +++A+ + NW ++ LL+ +P Y   V   N+++  + SAVP+  
Sbjct:   280 KSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYFG 339

Query:   249 MAVSGYMAGKASDSL-IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP-AVAAVLIT 306
               V   ++G+A+D+L  K  +S   VR++   IG  GP V L+   +     ++A   +T
Sbjct:   340 CWVCMILSGQAADNLRAKWNFSTLCVRRVFSLIGMFGPAVFLVAAGFIGCDYSLAVAFLT 399

Query:   307 IALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFV--QWLGSFQ 364
             I+ +L  F  +G+ ++  +IAP  AG L GI N+  T+  +I  +          +  +Q
Sbjct:   400 ISTTLGGFCSSGFSISHLDIAPSYAGILLGITNTFATIPGMIGPVIARSLTPENTIREWQ 459

Query:   365 AFLTVTAGLYFVTTIFWNLYSTGE 388
                 + A L     IF+ L+  GE
Sbjct:   460 TVFCIAAALNVFGAIFFTLFGKGE 483

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q53WP9	PHT42_ORYSJ	No assigned EC number	0.6887	1.0	0.7308	yes	no
Q9BYT1	S17A9_HUMAN	No assigned EC number	0.3246	0.9053	0.8119	yes	no
Q7XJR2	ANTR3_ARATH	No assigned EC number	0.7893	1.0	0.7636	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVI.3501.1 hypothetical protein (413 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	391
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	1e-50
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-36
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-24
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-22
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	3e-15
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	7e-15
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	1e-09
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-09
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	5e-09
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	2e-08
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	2e-08
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-08
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	3e-07
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-06
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	3e-05
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	1e-04
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	2e-04
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	4e-04
COG2211	467	COG2211, MelB, Na+/melibiose symporter and related	4e-04
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	5e-04
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	0.001
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	0.004

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  176 bits (447), Expect = 1e-50
 Identities = 106/386 (27%), Positives = 179/386 (46%), Gaps = 6/386 (1%)

Query: 12  FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS 71
           F WS +  G++ SS  +G I   +  G L  KY  K  +  G+ L S+ +++ PWAA   
Sbjct: 71  FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130

Query: 72  TASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIM 131
            A ++  R   GLA+G   PA   +  +W P  ER+  +G+   GF LG  + L ++  +
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL 190

Query: 132 L-STIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSV-KKRN 189
             S  G    F +F  +G  W   W     +DP   P +SK E + I +         R 
Sbjct: 191 CESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQ 250

Query: 190 PPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTM 249
              ++ +   LP W +  A   + W Y +L +++P + + V  V+ K+    S++P+   
Sbjct: 251 SLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFA 310

Query: 250 AVSGYMAGKASDSLIKAGY-SLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLI-TI 307
            +    AG  +D L  +   SLT  RKI   IG +GPG+    L Y  +     ++I T+
Sbjct: 311 WLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTL 370

Query: 308 ALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFL 367
           A ++SS   AG L+N  ++AP   GF+ GI    G +  +I++   G  +         +
Sbjct: 371 ANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLI 430

Query: 368 T--VTAGLYFVTTIFWNLYSTGERVF 391
              + A +  +  IF+ ++ + ER  
Sbjct: 431 VFLIMAFVNILCVIFYLIFGSAERQD 456

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  136 bits (344), Expect = 2e-36
 Identities = 103/385 (26%), Positives = 160/385 (41%), Gaps = 12/385 (3%)

Query: 2   SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST 61
           S A   L    G S++  G V S+F WGY+     GG L+D++G +K LA  + +W + T
Sbjct: 14  SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFT 73

Query: 62  LLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGN 121
            L   A   +  SL  +R   G AE    P +  + + WFP+ ERA+A+ I      LG 
Sbjct: 74  GLQ--AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG 131

Query: 122 VVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLI--QA 179
           ++G  L   +L        FI+   LG++W   W  K   DP         E + I    
Sbjct: 132 IIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL-KFIPDPPQKAKWLTEEEKYIVVGG 190

Query: 180 GKSDSVKKRNPPSLRH----LLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL 235
             ++   K      ++    LL     W + +     N G    L+W P Y      +++
Sbjct: 191 LLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSI 250

Query: 236 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA 295
            +A + +++P     +   + G+ SD L++ G SL   RK    I  +   + +   NY 
Sbjct: 251 LEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARK-TAIIAGLVLSLLMFATNYV 309

Query: 296 KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD-CAGFLHGIANSAGTLAAIISTIGTG 354
             P  A  L+ +       + A     I + AP   AG   G+ NS G L  I+  I  G
Sbjct: 310 NIPYAALALVALGFF-GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIG 368

Query: 355 YFVQWLGSFQAFLTVTAGLYFVTTI 379
                 GSF   L V A L  +  +
Sbjct: 369 AIAATTGSFAGALMVVAALALIGAL 393

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  101 bits (254), Expect = 3e-24
 Identities = 81/351 (23%), Positives = 147/351 (41%), Gaps = 21/351 (5%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
                + LA   G S + +G++ ++F  GY  +  + G L D++G ++VL  G+ L++L 
Sbjct: 16  GPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALG 75

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
            LL       S   LL +R   GL  G   PA + L + WFP  ER  A+G+   GF LG
Sbjct: 76  LLL--LLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLG 133

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
             +G LL  ++ S  G    F++ + L LL        +   P  S     +E       
Sbjct: 134 AALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLV 193

Query: 181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
            +  +  R+P              +++A +   + +F LL+++P+Y   V  ++   A  
Sbjct: 194 PAWKLLLRDPVLW-----------LLLALLLFGFAFFALLTYLPLY-QEVLGLSALLAGL 241

Query: 241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
              +     A+   + G+ SD L +        R ++  +  I   + L  L+  +S   
Sbjct: 242 LLGLAGLLGAIGRLLLGRLSDRLGR------RRRLLLALLLLILAALGLALLSLTESSLW 295

Query: 301 AAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIIST 350
             V + +    +          + ++AP +  G   G+ N+AG+L   +  
Sbjct: 296 LLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 97.4 bits (243), Expect = 1e-22
 Identities = 93/382 (24%), Positives = 160/382 (41%), Gaps = 52/382 (13%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           +S A+  LA   G S+S  G++ S+F  GY   S++ G L D++G ++VL  G+ L++L 
Sbjct: 18  LSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALG 77

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           +LL  +A   S   LL  R   GL  G   PA + L + WFP  ER  A+G+   GF LG
Sbjct: 78  SLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLG 135

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
            ++G LL  ++  ++G    F++ + LGLL                              
Sbjct: 136 ALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL------------------------- 170

Query: 181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
                          L        + +A    ++GY+ LL+++P+Y   V  ++  +A  
Sbjct: 171 ---------------LFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGL 215

Query: 241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
             ++      +   + G  SD L +        R+++  IG +   + LL L  A S A+
Sbjct: 216 LLSLFGLGGILGALLGGLLSDRLGR--------RRLLLLIGLLLAALGLLLLALAPSLAL 267

Query: 301 AAV-LITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW 359
             V L+ +   L     A   L  +   P+  G   G+ N+ G+L   +  +  G  +  
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD- 326

Query: 360 LGSFQAFLTVTAGLYFVTTIFW 381
            G +     + A L  +  +  
Sbjct: 327 TGGYGGVFLILAALALLAALLL 348

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 79/380 (20%), Positives = 145/380 (38%), Gaps = 33/380 (8%)

Query: 2   SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST 61
           ++A+  L  + G S + LG++ SSF   Y  S  + G++ D+   +  L  G+ L ++  
Sbjct: 15  ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVN 74

Query: 62  LLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGN 121
           L   ++   S   + A+ A  G+ +G+  P      ++WF   ER + +          N
Sbjct: 75  LFFGFST--SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSH---N 129

Query: 122 VVGLLLTPIMLSTIGISGP----FILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLI 177
           V G LL P++L  I         FI+   + ++        + + P  S  +  +E    
Sbjct: 130 VGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP-QSCGLPPAEEMPN 188

Query: 178 QAGKSDSVKKRNPPS-----LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN 232
           +    D+ KK    +     L+++L     W + +  +        +L W P+Y      
Sbjct: 189 EEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKG 248

Query: 233 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA-GYSLTLVRKIMQSIGFIGPGVSLLC 291
            + ++A+W   +      V   +AG  SD L       L +    +  +  +        
Sbjct: 249 FSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLV------- 301

Query: 292 LNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCA-----GFLHGIANSAGTLAA 346
             Y  +PA   ++  I L    F   G  + I  IA + A     G   G       L  
Sbjct: 302 --YWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGG 359

Query: 347 IISTIGTGYFVQ---WLGSF 363
           I++ +  GY      W G+F
Sbjct: 360 ILAGLPLGYLADGFGWAGAF 379

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 75.1 bits (185), Expect = 7e-15
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           M  A   ++A++G     LG + S+ L G  F ++  G L D+ G ++VL W + L+S+ 
Sbjct: 36  MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVF 95

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLL   A   +   LL +R   GL  G  MP ++ L S + P   R +A+G+   G+ +G
Sbjct: 96  TLLC--ALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153

Query: 121 NVVGLLLTPIMLSTIGISGPFIL 143
             VG  L   ++   G    F +
Sbjct: 154 AAVGGFLAGWLIPVFGWRSLFYV 176

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 26/156 (16%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
             VA   +A +FG   + +G   S+ + G +  +++GG L D+ G K++L   VAL+ L 
Sbjct: 34  AGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLF 93

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHER-------------- 106
           +L T  A      SLL  R   G+  G A+P +  LTS       R              
Sbjct: 94  SLATAQAW--DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151

Query: 107 ---ASAIGICMGG-------FHLGNVVGLLLTPIML 132
              AS IG+   G       F++G V  LLL P+++
Sbjct: 152 GALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLM 187

Length = 406

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 7   PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW 66
           P+AA  G S    G + +++  G    + +   L  +   +++L   +AL+ +S LL+  
Sbjct: 38  PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS-- 95

Query: 67  AATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLL 126
           A   S A LL  RA  GLA GV     + L +R  P  +R  A+ +   G  L  V+G+ 
Sbjct: 96  ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVP 155

Query: 127 LTPIMLSTIGISGPFILFSSLGLL 150
           L   +    G    F+  + L LL
Sbjct: 156 LGTFLGQLFGWRATFLAIAVLALL 179

Length = 394

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 69/333 (20%), Positives = 124/333 (37%), Gaps = 35/333 (10%)

Query: 2   SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST 61
            +AV  +    G S++ LG + +  +       +I G LVDK+G +      + L ++  
Sbjct: 22  PLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC 81

Query: 62  LLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGN 121
           L     A  S + LL +R F G+A G     M    S +FP   + +A+G+  G  ++G 
Sbjct: 82  LWAGL-AVQSYSVLLLLRLFIGIAGGSFASCM-PWISFFFPKKIQGTALGLAAGWGNMGG 139

Query: 122 -VVGLLLTPIMLSTIGISG--------------PFILFSSLGLLWLSTWTSKVTNDPCNS 166
            V   ++ PI+ S I  +G              P  +     LL            P   
Sbjct: 140 GVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATG 199

Query: 167 PFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWM-PI 225
               K     +  G      K      R   + + +    +      +G F+ +S +  +
Sbjct: 200 KLSFKGARWSVGTGALGDQLKV----FRDRHTWILALLYSV-----TFGSFLGVSSIFAM 250

Query: 226 YFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP 285
           +F   F ++   A  ++++     +++  + G  SD L  A   L     +      +  
Sbjct: 251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVL 310

Query: 286 GVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG 318
           G+         SP   AV I + ++L  FS AG
Sbjct: 311 GLV--------SPLSLAVFIVLFVALFFFSGAG 335

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 73/361 (20%), Positives = 126/361 (34%), Gaps = 35/361 (9%)

Query: 35  VIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH-STASLLAVRAFFGLAEGVAMPAM 93
           +  G L D++GG+K     + L  +  L   +A T+ ST  LL +    GLA       M
Sbjct: 67  LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGM 126

Query: 94  STLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLG----- 148
               S +FP  ++  A+GI   G +LG  V  L+ P++    G      +          
Sbjct: 127 -PNASFFFPKEKQGLALGIAGAG-NLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184

Query: 149 ---LLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTV 205
              L WL                               SVK + P  L+ + S   +W +
Sbjct: 185 AAVLAWLGMNDV---------------------PEHRASVKPQLPAQLKAVFSNKDTWLL 223

Query: 206 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIK 265
            +       G+    +++P+Y  T F ++   A   + +     A++  + G  SD +  
Sbjct: 224 SLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-- 281

Query: 266 AGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQE 325
            G  +TL   +  ++      + L    +  S  V   +       +          I  
Sbjct: 282 GGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPV 341

Query: 326 IAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFV-TTIFWNLY 384
           I P   G + GI  + G L      +  G  +   GS+     +    Y V   + W LY
Sbjct: 342 IFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401

Query: 385 S 385
           +
Sbjct: 402 A 402

Length = 417

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 82/398 (20%), Positives = 147/398 (36%), Gaps = 47/398 (11%)

Query: 2   SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST 61
           ++A+  L    G S + LGI+ S+F   Y  S  + G L D+   +  +A+G+ L ++  
Sbjct: 49  NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108

Query: 62  LLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGN 121
           +L  +  + S      +    G  +G+  P  +   + WF   ER +   I     H  N
Sbjct: 109 IL--FGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSI-WNTSH--N 163

Query: 122 VVGLLLTPIML-----STIGISGPFILFSSLGLL--WLSTWTSKVTNDPCNSPFVSK--- 171
           + G L   + L        G    F     + ++   +  +  +        P + +   
Sbjct: 164 IGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRG 223

Query: 172 ---SELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFV---LLSWMPI 225
                    +  +  +  +     ++++L     W + +AN+   + Y V   +  W P+
Sbjct: 224 DPLEIYEEEKENEGLTAWQI---FVKYVLKNKLIWLLALANV---FVYVVRYGINDWGPL 277

Query: 226 YFNTVFNVNLKQAAW-FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG 284
           Y + V   +L +A W  S      +     +AG  SD L K        R  M  I  + 
Sbjct: 278 YLSEVKGFSLVKANWAISLFEVAGLP-GTLLAGWLSDKLFKGR------RGPMALIFMLL 330

Query: 285 PGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDC-----AGFLHGIAN 339
              SL+   Y  +P  + +L  I L +  F   G  + I   A +      AG   G   
Sbjct: 331 ITASLVL--YWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVG 388

Query: 340 SAGTLA-AIISTIGTGYFVQ---WLGSFQAFLTVTAGL 373
               L  A ++ +  GY      W G F   L++ A L
Sbjct: 389 LFAYLIGAALAGLPLGYIADTWGWDGGF-IVLSIAALL 425

Length = 448

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 20  GIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVR 79
           G++ + +  G +  S + G L D++G K VL  G+ ++ LST +   A + +   L+  R
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF--ALSSNITVLIIAR 58

Query: 80  AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISG 139
              G     A+ A + L +  +P  ER  A+G+   G  LG ++G  L  ++   +G   
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 140 PFILFSSLGLL 150
           PF+  + L L 
Sbjct: 119 PFLFLAILALA 129

Length = 141

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 72/367 (19%), Positives = 129/367 (35%), Gaps = 33/367 (8%)

Query: 6   VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP 65
            PL   FG   + + I  +  L G   S  +GG L DK+G + V   G  L+ L      
Sbjct: 27  PPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY- 85

Query: 66  WAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGL 125
            A   S A+L           G+A         +WFP  +R  A GI +GG+ LG+ +  
Sbjct: 86  -AIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILS 143

Query: 126 LLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSV 185
            L   +++  G+   FI    + LL +    + +   P      +  E+ +      + +
Sbjct: 144 PLITSVINLEGVPAAFIYMGIIFLLVI-VLGAFLIGYPPGQLIKTNIEVSVKDYTVWEML 202

Query: 186 KKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVP 245
           +              P + V+  +   N    +LL  +   +     ++           
Sbjct: 203 RT-------------PQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFL------- 242

Query: 246 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLI 305
              +AVS                S  + R+   SI F    V +  + +   P +  VL 
Sbjct: 243 --VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI--PMLNDVLF 298

Query: 306 TIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIAN-----SAGTLAAIISTIGTGYFVQWL 360
              ++L  F+  G +     +  D  G  +  AN     +A  +A I   +   + +  +
Sbjct: 299 LATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI 358

Query: 361 GSFQAFL 367
           G    F+
Sbjct: 359 GFEYTFI 365

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 7/140 (5%)

Query: 15  SSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTAS 74
           S+   G++ S F  G +  S+  G L D++G KK L  G  L+ +  LL  +A   S   
Sbjct: 44  STVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYM 103

Query: 75  LLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIM--- 131
           L+  R   GL  G     +    S   P   R    G     + LG   G+L+  I+   
Sbjct: 104 LIVGRVIVGLGVGGISVLVPMYISEIAPKKLR----GALGSLYQLGITFGILVAAIIGLG 159

Query: 132 LSTIGISGPFILFSSLGLLW 151
           L+    S  + +   L  + 
Sbjct: 160 LNKYSNSDGWRIPLGLQFVP 179

Length = 449

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 4   AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLL 63
           A + +    G S++  G+  + F   Y+   +    ++   G ++ +A  + LW +++  
Sbjct: 30  AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTA 89

Query: 64  TPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVV 123
           T +A      SL  +R   G+AE   +P +    + WFP++ RA A  + M    +   +
Sbjct: 90  TMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL 147

Query: 124 GLLLTPIMLSTIGI 137
           GL+L+  +L+  G+
Sbjct: 148 GLILSGYILALDGL 161

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 32/155 (20%), Positives = 69/155 (44%), Gaps = 2/155 (1%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           +++ +  +A +FG ++     + S+ L    F +++ G   D+YG +  +   + L+S  
Sbjct: 31  VALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG 90

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TL   +A  + T  +   R   G+  G    + +      +P H R  A G+ + G+ +G
Sbjct: 91  TLACGFAPGYIT--MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVG 148

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTW 155
            VV   +  +++   G     + F S+  +  + W
Sbjct: 149 AVVAAQVYSLVVPVWGDGWRALFFISILPIIFALW 183

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 3/140 (2%)

Query: 5   VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLT 64
           V P+ A  GW  + + +  + F+    +   I G  VDKYG + V+ +G  +  L  +L 
Sbjct: 26  VNPIDATHGWGRAAIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLN 85

Query: 65  PWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVG 124
            +A +       AV A  G A  V    +     +WFP  +R  A G+   GF  G  + 
Sbjct: 86  AYADSLPALYAAAVVAGIG-AGAVYGTCVGN-ALKWFPD-KRGLAAGLTAAGFGAGAALT 142

Query: 125 LLLTPIMLSTIGISGPFILF 144
           ++    M+   G    F+ F
Sbjct: 143 VVPIAAMIKVSGYQAAFMYF 162

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 15/132 (11%)

Query: 31  IFSSVIGGALVDKYGGKKVLAWGVA------------LWSLSTLLTPWAATHSTASLLAV 78
              + +   LVD++G + +L  G A              S  T  +  +   +   +L  
Sbjct: 333 FAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLF 392

Query: 79  RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGIS 138
            AFF +  G   P    + S  FP   R   I I +    L N +   L P ML +IG+ 
Sbjct: 393 IAFFAMGWG---PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVG 449

Query: 139 GPFILFSSLGLL 150
           G FI F  L +L
Sbjct: 450 GVFIFFGGLNVL 461

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 13  GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHST 72
           G    F  ++  +   G +   ++   LV K+G KK+   G+ L ++  LL  +    S 
Sbjct: 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSV 327

Query: 73  ASLLAVRAFFGLAEGVAMPAMSTLTS------RWFPSHERASAI--GICMGGFHLGNVVG 124
             ++      G+  G+A P    + +       W  +  R   I          LG  + 
Sbjct: 328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWK-TGVRREGIVYSGMTFFRKLGLALA 386

Query: 125 LLLTPIMLSTIG 136
             +   +L  IG
Sbjct: 387 GFIPGWILGAIG 398

Length = 467

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 15  SSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTAS 74
           SSS  G+V S FL G    ++  G L D++G KK L     L+ +  +L   AA   +  
Sbjct: 69  SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVE 128

Query: 75  LLAV-RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLT 128
           +L V R   G+  G+A   +    S   P   R    G     + L    G+L+ 
Sbjct: 129 MLIVGRVLLGIGVGIASALVPMYLSEIAPKALR----GALTSLYQLAITFGILVA 179

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 31  IFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLT----PWAATHSTASLLAVRAFFGLAE 86
              + I   LVD++G + +L  G A  ++  L+        A    A ++A+        
Sbjct: 300 FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIA 359

Query: 87  GVAM---PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFIL 143
             A+   P    + S  FP   R  A+ I      L N +   L PI+   IG    F++
Sbjct: 360 FFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYV-FLV 418

Query: 144 FSSLGLL 150
           F+ L +L
Sbjct: 419 FAGLLVL 425

Length = 449

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 2   SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST 61
           +VA+  +A   G S S +  V +S++     S  + G L  ++G +++       ++L +
Sbjct: 22  NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81

Query: 62  LLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGN 121
           LL       +   ++  R   G   G  +P   +     +P  +R    G  M  + L  
Sbjct: 82  LLC--GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKR----GRAMAIWGLTV 135

Query: 122 VVGLLLTPIM 131
           +V   L P +
Sbjct: 136 LVAPALGPTL 145

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK03699	394	putative transporter; Provisional	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK10504	471	putative transporter; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PRK11043	401	putative transporter; Provisional	100.0
TIGR00896	355	CynX cyanate transporter. This family of proteins	100.0
PRK12382	392	putative transporter; Provisional	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
PRK15011	393	sugar efflux transporter B; Provisional	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	100.0
PRK10054	395	putative transporter; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	100.0
PRK11010	491	ampG muropeptide transporter; Validated	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	100.0
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
PRK09528	420	lacY galactoside permease; Reviewed	100.0
KOG2533	495	consensus Permease of the major facilitator superf	100.0
PRK11902	402	ampG muropeptide transporter; Reviewed	100.0
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	100.0
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	100.0
TIGR00901	356	2A0125 AmpG-related permease.	100.0
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	100.0
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.98
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.98
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.97
TIGR00805	633	oat sodium-independent organic anion transporter.	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
KOG0569	485	consensus Permease of the major facilitator superf	99.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.97
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.97
KOG2615	451	consensus Permease of the major facilitator superf	99.97
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.97
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.95
PTZ00207	591	hypothetical protein; Provisional	99.95
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.95
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.94
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.93
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.93
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.93
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.93
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.93
PRK09669	444	putative symporter YagG; Provisional	99.93
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.93
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.92
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.91
PRK09848	448	glucuronide transporter; Provisional	99.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.9
PF13347	428	MFS_2: MFS/sugar transport protein	99.9
PRK10429	473	melibiose:sodium symporter; Provisional	99.9
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.89
PRK11462	460	putative transporter; Provisional	99.86
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.85
KOG2563	480	consensus Permease of the major facilitator superf	99.85
COG2211	467	MelB Na+/melibiose symporter and related transport	99.84
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.84
KOG3626	735	consensus Organic anion transporter [Secondary met	99.82
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.81
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.74
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.74
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.7
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.69
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.68
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.65
PRK05122	399	major facilitator superfamily transporter; Provisi	99.59
PRK10642	490	proline/glycine betaine transporter; Provisional	99.58
PRK10489	417	enterobactin exporter EntS; Provisional	99.57
PRK09528	420	lacY galactoside permease; Reviewed	99.57
PRK10054	395	putative transporter; Provisional	99.56
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.55
PRK03893	496	putative sialic acid transporter; Provisional	99.54
PRK15011	393	sugar efflux transporter B; Provisional	99.53
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.53
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.53
PRK09874	408	drug efflux system protein MdtG; Provisional	99.52
PRK12382	392	putative transporter; Provisional	99.52
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.52
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.51
PRK11663	434	regulatory protein UhpC; Provisional	99.51
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.51
PRK03633	381	putative MFS family transporter protein; Provision	99.5
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.5
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.49
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.49
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.49
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.49
PRK03545	390	putative arabinose transporter; Provisional	99.49
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.48
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.48
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.47
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.47
PRK10504	471	putative transporter; Provisional	99.46
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.46
TIGR00900	365	2A0121 H+ Antiporter protein.	99.45
PRK09705	393	cynX putative cyanate transporter; Provisional	99.44
PRK10091	382	MFS transport protein AraJ; Provisional	99.43
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.43
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.43
PRK11010	491	ampG muropeptide transporter; Validated	99.42
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.42
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.41
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.4
PRK03699	394	putative transporter; Provisional	99.4
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.38
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.38
PLN00028	476	nitrate transmembrane transporter; Provisional	99.37
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.37
PRK11043	401	putative transporter; Provisional	99.37
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.37
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.36
TIGR00895	398	2A0115 benzoate transport.	99.36
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.36
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.35
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.35
TIGR00891	405	2A0112 putative sialic acid transporter.	99.34
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.34
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.33
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.32
TIGR00893	399	2A0114 d-galactonate transporter.	99.32
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.32
PRK09952	438	shikimate transporter; Provisional	99.31
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.31
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.3
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.3
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.3
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.3
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.3
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.3
KOG3762	618	consensus Predicted transporter [General function	99.29
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.28
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.27
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.27
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.27
PRK15075	434	citrate-proton symporter; Provisional	99.26
PRK12307	426	putative sialic acid transporter; Provisional	99.26
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.26
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.26
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.22
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.21
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.2
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.19
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.19
PRK10133	438	L-fucose transporter; Provisional	99.19
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.18
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.17
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.17
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.16
PRK11902	402	ampG muropeptide transporter; Reviewed	99.16
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.15
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.13
TIGR00898	505	2A0119 cation transport protein.	99.12
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.11
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.1
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.09
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.07
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.06
KOG0569	485	consensus Permease of the major facilitator superf	99.06
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.06
PRK09848	448	glucuronide transporter; Provisional	99.06
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.05
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.05
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.05
TIGR00901	356	2A0125 AmpG-related permease.	99.04
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.03
PTZ00207	591	hypothetical protein; Provisional	99.02
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.01
KOG0637	498	consensus Sucrose transporter and related proteins	99.01
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.0
COG0477	338	ProP Permeases of the major facilitator superfamil	99.0
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.98
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.97
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.97
TIGR00805	633	oat sodium-independent organic anion transporter.	98.96
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.93
KOG3810	433	consensus Micronutrient transporters (folate trans	98.9
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.88
KOG2615	451	consensus Permease of the major facilitator superf	98.87
KOG3762	618	consensus Predicted transporter [General function	98.83
PRK09669	444	putative symporter YagG; Provisional	98.82
PRK11462	460	putative transporter; Provisional	98.81
PRK10429	473	melibiose:sodium symporter; Provisional	98.78
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.76
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.74
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.71
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.69
PF13347	428	MFS_2: MFS/sugar transport protein	98.68
COG2211	467	MelB Na+/melibiose symporter and related transport	98.65
KOG2532	466	consensus Permease of the major facilitator superf	98.65
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.56
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.55
KOG0254	513	consensus Predicted transporter (major facilitator	98.53
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.5
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.46
KOG2533	495	consensus Permease of the major facilitator superf	98.44
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.42
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.34
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.33
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.31
PF12832	77	MFS_1_like: MFS_1 like family	98.26
PF12832	77	MFS_1_like: MFS_1 like family	98.21
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.18
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.12
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.07
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	98.0
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.0
COG3202	509	ATP/ADP translocase [Energy production and convers	97.94
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.9
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.85
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.81
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.77
KOG3880	409	consensus Predicted small molecule transporter inv	97.71
KOG2563	480	consensus Permease of the major facilitator superf	97.54
PRK03612	521	spermidine synthase; Provisional	97.51
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.41
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.28
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.11
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.05
PRK03612	521	spermidine synthase; Provisional	96.92
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.83
COG0477	338	ProP Permeases of the major facilitator superfamil	96.62
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.33
KOG3626	735	consensus Organic anion transporter [Secondary met	96.22
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.14
KOG0637	498	consensus Sucrose transporter and related proteins	96.13
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.89
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.24
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.16
KOG3097	390	consensus Predicted membrane protein [Function unk	95.06
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.95
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	94.42
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	93.18
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	93.11
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.99
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	90.38
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	90.26
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	88.51
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	86.26

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1e-42  Score=305.19  Aligned_cols=357  Identities=22%  Similarity=0.263  Sum_probs=300.8

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~   82 (391)
                      .++|++.+|+|+|..+.|+..|.|.+++.+++|+...+.||+.||++++..+.++.++++++  ++++||+.++++|++.
T Consensus        34 gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~--alAp~f~~Ll~aR~~~  111 (394)
T COG2814          34 GLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS--ALAPSFAVLLLARALA  111 (394)
T ss_pred             hchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999  4559999999999999


Q ss_pred             HhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccC
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~  162 (391)
                      |+..|.+++...++..|..|++||++++++...+.+++.++|.+++.++.+.+|||.+|++.+.++++..+..+..+|  
T Consensus       112 g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--  189 (394)
T COG2814         112 GLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999998888888888  


Q ss_pred             CCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHh
Q 016338          163 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFS  242 (391)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  242 (391)
                      |++.++..+.                +..+..+.+|+|+.+...+..++...+.+..++|+.+++++..|+|++..++..
T Consensus       190 ~~~~~~~~~~----------------~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~L  253 (394)
T COG2814         190 PSEISGSLPG----------------PLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVL  253 (394)
T ss_pred             CccCCCCCCc----------------chhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHH
Confidence            2221111111                112346889999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC-chhHHHHHHHHHHHhhhhcccchhh
Q 016338          243 AVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLL  321 (391)
Q Consensus       243 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  321 (391)
                      ..+++++.+|..+.|++.|| +.+         ..+.....+..+.+..+.... +.+.......+..+...........
T Consensus       254 l~~Gv~~~~Gn~~gGrl~dr-~~~---------~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~  323 (394)
T COG2814         254 LAFGIAGFIGNLLGGRLADR-GPR---------RALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQT  323 (394)
T ss_pred             HHHHHHHHHHHHHHhhhccc-cch---------hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            99999999999999999999 532         333344444444444444433 3434444444433333333334444


Q ss_pred             hhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCccc
Q 016338          322 NIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERV  390 (391)
Q Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (391)
                      ...+..||.+..+.+++....++|..+|..++|.+.|+.| +....+..+...+++.++.+...+.+|+
T Consensus       324 ~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~~~~~~~~~~  391 (394)
T COG2814         324 RLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLLLALLLALLSARKDRR  391 (394)
T ss_pred             HhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            4555667999999999999999999999999999999987 9999999999999998888776665543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.9e-44  Score=308.42  Aligned_cols=378  Identities=20%  Similarity=0.227  Sum_probs=314.2

Q ss_pred             CccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHH
Q 016338            1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (391)
Q Consensus         1 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~   80 (391)
                      ++.+.|.+.+|.++|.+|+|.+.+.+.+.|.++.++.|.++||.++|+.+..++++.++..++.++.  ++.+.+.+..+
T Consensus        48 F~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs--~s~~~~~~l~~  125 (448)
T COG2271          48 FNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS--PSLFLFAVLWV  125 (448)
T ss_pred             HhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh--hHHHHHHHHHH
Confidence            3578899999999999999999999999999999999999999999999999999999999999655  89999999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHH--HHHHhhcCchhHHHHHHHHHHHHHHHHhhc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLT--PIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~--~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      ++|..+|..+|.+...+..|+|+||||+..++++++-++|..+.|++.  +.+..+.+||..|++.++++++..+..++.
T Consensus       126 lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~  205 (448)
T COG2271         126 LNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL  205 (448)
T ss_pred             HHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999  888888999999999999999999999999


Q ss_pred             cccCCCCCCCCChhHHHHHHcCCCcccccC-----CCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCC
Q 016338          159 VTNDPCNSPFVSKSELRLIQAGKSDSVKKR-----NPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNV  233 (391)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  233 (391)
                      .+|+|++..-.+.+|.+....+..++++++     .+.-.+.+++||.+|.+++..++.+..-+++..|.|.|+.|+.|+
T Consensus       206 ~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~  285 (448)
T COG2271         206 LRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGF  285 (448)
T ss_pred             hCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCC
Confidence            999998876544444322211111111111     122346788999999999999999999999999999999999999


Q ss_pred             CcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCch--hHHHHHHHHHHHh
Q 016338          234 NLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP--AVAAVLITIALSL  311 (391)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  311 (391)
                      |..+++...+.+-.++++|.++.|+++||+-+.+      |.....+.+++..+++..+...++.  ....++..+.++.
T Consensus       286 s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~  359 (448)
T COG2271         286 SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFL  359 (448)
T ss_pred             CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc------cchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999986432      5556666666677777777666644  3333333333322


Q ss_pred             hhhcccchhhhhhhccc-cchhHHHHHHHHHHHH-HHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccC
Q 016338          312 SSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTG  387 (391)
Q Consensus       312 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (391)
                      ........-....|+.| +..|++.|+...++++ |.+.+....|++.|.+| |...|.+..+..+++.+++....+.
T Consensus       360 IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         360 IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC-CcchHHHHHHHHHHHHHHHHHHHhh
Confidence            22222233345668888 7899999999999999 99999999999999988 8888888888888887777665543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.9e-42  Score=313.81  Aligned_cols=381  Identities=34%  Similarity=0.674  Sum_probs=347.0

Q ss_pred             HHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhc
Q 016338            9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGV   88 (391)
Q Consensus         9 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~   88 (391)
                      ..++++|++|.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++.+++...+++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            45789999999999999999999999999999999999999999999999999999999888888889999999999999


Q ss_pred             hhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh-cCchhHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 016338           89 AMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLSTWTSKVTNDPCNSP  167 (391)
Q Consensus        89 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (391)
                      .+|+...+.++|.|++||++..++..++..+|.+++.+++|++.+. +||+++|++.++.+++..++++.+..|+|++++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999999999999999999999999999999999999999999998 999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHcCCCcccccC-CCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHH
Q 016338          168 FVSKSELRLIQAGKSDSVKKR-NPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPW  246 (391)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  246 (391)
                      ..+++|++..++++.+++.++ .+.+++++++++.+|.+.+..++.....+.+..|.|.|+++.+|+|..+.|++.+++.
T Consensus       225 ~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~  304 (466)
T KOG2532|consen  225 NISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPF  304 (466)
T ss_pred             CCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHH
Confidence            999999988877766554433 6779999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCc--hhHHHHHHHHHHHhhhhcccchhhhhh
Q 016338          247 GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS--PAVAAVLITIALSLSSFSQAGYLLNIQ  324 (391)
Q Consensus       247 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (391)
                      +.+.+..+++|.++||+.+|+......||..-.++..+.++.++.+.+.+.  .+...+++.+..+..+...+..+....
T Consensus       305 l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~  384 (466)
T KOG2532|consen  305 LAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQ  384 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhh
Confidence            999999999999999998876666777899999999999999999888764  334556666667777777788888888


Q ss_pred             hccccchhHHHHHHHHHHHHHHHHHHHHhhHhhc--cccchhHHHHHHHHHHHHHHHHHHHhccCcc
Q 016338          325 EIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQ--WLGSFQAFLTVTAGLYFVTTIFWNLYSTGER  389 (391)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (391)
                      +..|++.+..+|+.+....+.++++|.+.|.+..  ...+|+..|.+.+++.+++.+.+.++.+.++
T Consensus       385 ~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~  451 (466)
T KOG2532|consen  385 DIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEP  451 (466)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcc
Confidence            8899999999999999999999999999999983  2345999999999999999998888765543

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=6.2e-41  Score=307.60  Aligned_cols=354  Identities=16%  Similarity=0.124  Sum_probs=284.9

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~   82 (391)
                      +++|.+.+|+|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+..+..++++.+++  ++|++.+++.|+++
T Consensus        30 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~~~  107 (390)
T PRK03545         30 GLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL--AWNFTVLLISRIGI  107 (390)
T ss_pred             cchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999999999999999999854  49999999999999


Q ss_pred             HhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccC
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~  162 (391)
                      |++.+...+...+++.|++|+|||++++++.+.+.++|..++|++++.+.++.|||+.|++.+++.++..+......||+
T Consensus       108 G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        108 AFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999888999999999999999999999999999999999999999999999999999999988877766666555654


Q ss_pred             CCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHh
Q 016338          163 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFS  242 (391)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  242 (391)
                      |++++    +                ..++.++.+|+|.++......++.........++.+.++++..|+|+.+++.+.
T Consensus       188 ~~~~~----~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~  247 (390)
T PRK03545        188 PSEHS----G----------------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLL  247 (390)
T ss_pred             CCCCc----c----------------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence            33211    0                112356788999888776666666666666778888898888899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhh
Q 016338          243 AVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLN  322 (391)
Q Consensus       243 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (391)
                      ....++.++++++.+++.||.++|         ....................++.+.......+.+.......+.....
T Consensus       248 ~~~~~~~~~g~~~~g~l~dr~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  318 (390)
T PRK03545        248 LLFGGAGIIGSVLFSRLGNRHPSG---------FLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVK  318 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchh---------HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            999999999999999999998743         22222222222222222333344433333333333333334445566


Q ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          323 IQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      ..+..|+++++++|+.+...++|..+||.+.|.+.|+.| ++..+...+.+.+++.+......|++
T Consensus       319 ~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (390)
T PRK03545        319 VLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSILIFRRF  383 (390)
T ss_pred             HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHHHcccc
Confidence            667788899999999999999999999999999999998 89999999998888888777666543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=9.6e-41  Score=301.45  Aligned_cols=353  Identities=14%  Similarity=0.073  Sum_probs=267.4

Q ss_pred             CccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHH
Q 016338            1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (391)
Q Consensus         1 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~   80 (391)
                      +++.+|.+++|+|+|++|.|++.+.+.+++.+++++.|+++||+|||+++.........+....  ...+|++.+++.|+
T Consensus        10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~R~   87 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL--LDPFNYEWLLACQL   87 (368)
T ss_pred             HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHH
Confidence            3688999999999999999999999999999999999999999999987765555544443322  22379999999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      ++|++.+. .+.....++|++|+|+|++++++.+.+..+|..+++++++.+.+++|||+.|.+.++++++..++.++..|
T Consensus        88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903        88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999986 46666777999999999999999999999999999999999999999999999999998888887888888


Q ss_pred             cCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhH
Q 016338          161 NDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW  240 (391)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  240 (391)
                      |+|+++++..+.+              +..+++++++|||.+|...+..++....++.+.+|+|+|+++ .|++.+ .+.
T Consensus       167 ~~p~~~~~~~~~~--------------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~  230 (368)
T TIGR00903       167 ALPFQAAEGFGFK--------------DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGD  230 (368)
T ss_pred             CCCCCCCCCcchH--------------HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHH
Confidence            8776542211000              001246789999999999999999999999999999999987 678864 555


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchh
Q 016338          241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL  320 (391)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (391)
                      ......+.+.++   .+++.||..||+.     |+..........++........++......+..+..++.....+..+
T Consensus       231 ~~~l~~~~g~~g---~~~~~d~~~r~~~-----r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  302 (368)
T TIGR00903       231 AVALAILAGLIG---VAVIPDRVARAGL-----RSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIM  302 (368)
T ss_pred             HHHHHHHHHHHH---HHHhhHHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHH
Confidence            555555544444   5788888875531     12222222233333333333333333333333434344444445566


Q ss_pred             hhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 016338          321 LNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       321 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      .+..|..| +.|+++.|+.+..+++++..+|.+.+.+..  | ....|.+.+...+++.+..++
T Consensus       303 ~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~-~~~~f~~~~~~~~i~~~~~~~  363 (368)
T TIGR00903       303 DWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S-AEAYFTFLAILITIAFAIALL  363 (368)
T ss_pred             HHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHHHh
Confidence            78888888 799999999999999999999999998874  4 667777778777777776653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=2e-41  Score=317.57  Aligned_cols=375  Identities=15%  Similarity=0.132  Sum_probs=281.1

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhh---hccchHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA---ATHSTASLLAV   78 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a---~~~~~~~~~~~   78 (391)
                      ++..|.+.+|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+..++.   .++|++.+++.
T Consensus        49 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  128 (467)
T PRK09556         49 KAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIAL  128 (467)
T ss_pred             hhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999888887777665432   35899999999


Q ss_pred             HHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc---CchhHHHHHHHHHHHHHHHH
Q 016338           79 RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI---GISGPFILFSSLGLLWLSTW  155 (391)
Q Consensus        79 r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~---gwr~~f~~~~~~~~~~~~~~  155 (391)
                      |+++|++.+...|...++++||+|+++||+++|+.+.+.++|.++++.+..++.+..   +||..|.+.+++.++..++.
T Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~  208 (467)
T PRK09556        129 WALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIG  208 (467)
T ss_pred             HHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987776653   69999999888888877777


Q ss_pred             hhccccCCCCCCCCChhHHHHHH--cCCCcccccC-C-Ccc-HHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 016338          156 TSKVTNDPCNSPFVSKSELRLIQ--AGKSDSVKKR-N-PPS-LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV  230 (391)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (391)
                      ++..+|+|++++..++++....+  ++.+++++++ . .+. .++.+|+|.+|...+..++.+..+.+...|.|.|+++.
T Consensus       209 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~  288 (467)
T PRK09556        209 LRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE  288 (467)
T ss_pred             HHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            77777776654332222210000  0000000000 1 111 23378999999999999998888888999999999988


Q ss_pred             hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHH-HHHHH
Q 016338          231 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVL-ITIAL  309 (391)
Q Consensus       231 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  309 (391)
                      +|+|..+++.......++..+++++.|+++||+++|       +.....................++.....+. +.++.
T Consensus       289 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  361 (467)
T PRK09556        289 LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR-------RALVACIALALIIFTLGVYQHATSEYMYLASLFALGF  361 (467)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------chHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            999999999999989999999999999999999876       2222211111112112222232333333222 22222


Q ss_pred             Hhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHH-HHHHHHHHhhHhhc------------cccchhHHHHHHHHHHH
Q 016338          310 SLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQ------------WLGSFQAFLTVTAGLYF  375 (391)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-g~~i~~~~~g~l~~------------~~g~~~~~~~~~~~~~~  375 (391)
                      ...+.. ........|..| +++|++.|+.+..+++ |.+++|.+.|.+.|            ..| |+..|.+..++.+
T Consensus       362 ~~~~~~-~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~  439 (467)
T PRK09556        362 LVFGPQ-LLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAALDIAAI  439 (467)
T ss_pred             HHhhHH-HHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHHHHHHHH
Confidence            221111 112244457777 7999999999999997 77999999999999            456 8999999888888


Q ss_pred             HHHHHHHHhc
Q 016338          376 VTTIFWNLYS  385 (391)
Q Consensus       376 ~~~~~~~~~~  385 (391)
                      ++.+..+..+
T Consensus       440 ~~~~~~~~~~  449 (467)
T PRK09556        440 GCICLMAIVA  449 (467)
T ss_pred             HHHHHHHHHH
Confidence            8877766553

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=2.8e-40  Score=304.20  Aligned_cols=378  Identities=26%  Similarity=0.448  Sum_probs=297.1

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      +...|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++..+.++  ++|++.+++.|++
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l   91 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF--AGAYVSLYILRVL   91 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH--HcCHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999998854  4899999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .|++.+...+....++.|++|+|+|++++++.+...++|..+++.+++.+.+..+||+.|.+.+++.++..+......||
T Consensus        92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (399)
T TIGR00893        92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPD  171 (399)
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecC
Confidence            99999999999999999999999999999999999999999999999999999999999999998888877777767777


Q ss_pred             CCCCCCCCChhHHHHHHcC-----CCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcc
Q 016338          162 DPCNSPFVSKSELRLIQAG-----KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  236 (391)
                      +|++++..++++++...+.     ++++++++...+.++.+|+|+++...+..++..........+.|.|+++.+|.++.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (399)
T TIGR00893       172 PPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSIL  251 (399)
T ss_pred             CCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHH
Confidence            6654433322222211111     11112223345678889999999999999999999999999999999998999999


Q ss_pred             hhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcc
Q 016338          237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQ  316 (391)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (391)
                      +.+.+.....+...+++++.+++.||+++|+...... ......+..............++.+.......+.....+ ..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  329 (399)
T TIGR00893       252 EAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA-RKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AG  329 (399)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH-HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hh
Confidence            9999999999999999999999999999863111111 111111211122222222222233333333333333333 55


Q ss_pred             cchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 016338          317 AGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       317 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      +....+..|..| ++|+++.|+.+...++|..++|.+.|.+.|..|++...+.+.++..+++.+..+.
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       330 AIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             hHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            667777778777 8999999999999999999999999999999887888888888887777666543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=1.9e-40  Score=311.38  Aligned_cols=378  Identities=26%  Similarity=0.470  Sum_probs=298.9

Q ss_pred             HhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchh
Q 016338           11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAM   90 (391)
Q Consensus        11 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~   90 (391)
                      |+++|.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++..++++.+++.|+++|++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            78999999999999999999999999999999999999999999999999888755545678899999999999999999


Q ss_pred             hhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc-CchhHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 016338           91 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV  169 (391)
Q Consensus        91 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (391)
                      +....++.|++|+++|++++++...+..+|..+++++++.+.+.. |||+.|++.+++.++..+..+...+|+|+++++.
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~  229 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI  229 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC
Confidence            999999999999999999999999999999999999999999884 9999999999998888877777778877665544


Q ss_pred             ChhHHHHHHcCCCc-ccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHH
Q 016338          170 SKSELRLIQAGKSD-SVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGT  248 (391)
Q Consensus       170 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (391)
                      +++|++..++..++ +++++.+.++++++++|.+|...+..++.....+.+.+|+|.|+++.+|.+..+.++..+...++
T Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~  309 (465)
T TIGR00894       230 SKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF  309 (465)
T ss_pred             CHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHH
Confidence            44444333222111 11222344689999999999999999999999999999999999998999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHhHhhHHHHHHhhc-CCchhHHHHHHHHHHHhhhhcccchhhhhhhc
Q 016338          249 MAVSGYMAGKASDSLIKAGYSLTL-VRKIMQSIGFIGPGVSLLCLNY-AKSPAVAAVLITIALSLSSFSQAGYLLNIQEI  326 (391)
Q Consensus       249 ~~~~~~~~g~l~dr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (391)
                      ..++.++.|+++||.++|+..... .++.....+..+..+..+.... ..+.........+.....+...+.......+.
T Consensus       310 ~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  389 (465)
T TIGR00894       310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDL  389 (465)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhc
Confidence            999999999999999876543222 2223333332222222222222 22333333334444444444444455566788


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHhhHhhccc--cchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          327 APDCAGFLHGIANSAGTLAAIISTIGTGYFVQWL--GSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       327 ~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      .|+.+|.+.|+.+..+.+++.++|.+.|.+.|..  +++...|.+.++..+++.++.....+.+
T Consensus       390 ~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~  453 (465)
T TIGR00894       390 APRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAE  453 (465)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeecce
Confidence            8899999999999999999999999999988753  4588889999888888888777665544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.7e-40  Score=305.99  Aligned_cols=363  Identities=16%  Similarity=0.218  Sum_probs=273.6

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      +...|.+++|+|+|.++.|++.+++.+++.+++++.|+++||+|||+++..+.++..++.+++++  ++|++.+++.|++
T Consensus        28 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l  105 (412)
T TIGR02332        28 GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMF--ATGPESLYLLRIL  105 (412)
T ss_pred             HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999954  5999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh------hcCchhHHHHHHHHHHHHHHHH
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS------TIGISGPFILFSSLGLLWLSTW  155 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~------~~gwr~~f~~~~~~~~~~~~~~  155 (391)
                      +|++.+...+....++.|++|+|+|++++++++...++|..+++.+++++.+      ..|||+.|.+.+++.++..++.
T Consensus       106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~  185 (412)
T TIGR02332       106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMT  185 (412)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998864      3699999999998888877777


Q ss_pred             hhccccCCCCCCCCChhHHHHHHc----CC---Ccccc--cCC----CccHHHhhcCCchHHHHHHHHHHHHHHHHHHHh
Q 016338          156 TSKVTNDPCNSPFVSKSELRLIQA----GK---SDSVK--KRN----PPSLRHLLSKLPSWTVIIANITNNWGYFVLLSW  222 (391)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (391)
                      +++.||+|++.+..++++++..++    +.   +++++  +++    ...++++ ++|.+|...+..++....++.+.+|
T Consensus       186 ~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  264 (412)
T TIGR02332       186 WFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREI-FTPAIMLYTLAYFCLTNTLSAINIW  264 (412)
T ss_pred             hhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888887644222222211110    10   00000  011    1123333 4688888888888888889999999


Q ss_pred             hHHHHHhh-hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHH
Q 016338          223 MPIYFNTV-FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVA  301 (391)
Q Consensus       223 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (391)
                      +|.++++. .|.+..+++.......++..++.++.|+++||+++|       +.... .........+......++....
T Consensus       265 ~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~  336 (412)
T TIGR02332       265 TPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER-------KHHTA-LPYLFAAAGWLLASATDHNLIQ  336 (412)
T ss_pred             HHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc-------HHHHH-HHHHHHHHHHHHHHhcCCHHHH
Confidence            99999883 467888889999999999999999999999999865       32221 2222222222222222222222


Q ss_pred             HHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHH
Q 016338          302 AVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYF  375 (391)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~  375 (391)
                      ....++.........+.......|..| ++|+++.|+.+...++|++++|.+.|.+.|..|+|+..+.+.++..+
T Consensus       337 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~~  411 (412)
T TIGR02332       337 LLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALLV  411 (412)
T ss_pred             HHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHHh
Confidence            221221111111112223333455555 89999999999999999999999999999998889988887766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=3.3e-40  Score=306.45  Aligned_cols=376  Identities=15%  Similarity=0.184  Sum_probs=281.1

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++.+|.+.+++|.|.++.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++.++  ++|++.+++.|++
T Consensus        43 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l  120 (434)
T PRK11663         43 NAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF--SSSLWAFALLWVL  120 (434)
T ss_pred             HHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999998855  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .|++.|...+...+++.|++|+|+|++++++.+...++|..+++.+.+.+.+.+|||+.|++.+++.++..+...+..||
T Consensus       121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~  200 (434)
T PRK11663        121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRD  200 (434)
T ss_pred             HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999998999999999999999999999999999999999999999999999999999999888877665555556677


Q ss_pred             CCCCCCCCChhH--HHHHHcCCCcccccCCCcc-H-HHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcch
Q 016338          162 DPCNSPFVSKSE--LRLIQAGKSDSVKKRNPPS-L-RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ  237 (391)
Q Consensus       162 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  237 (391)
                      +|++.+..+.++  .+..+...+.++++.+.++ + +..+++|.+|...+..+.....+..+.+|+|.|+++.+|++..+
T Consensus       201 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~  280 (434)
T PRK11663        201 KPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT  280 (434)
T ss_pred             CHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH
Confidence            665332111110  0000000000001111111 1 23667899999888888888888888899999998878999999


Q ss_pred             hhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH---HHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhh
Q 016338          238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKI---MQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSF  314 (391)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (391)
                      ++...+...+++.+++++.|++.||+.+++      |+.   ....+.......+..... .+...... ..+..+....
T Consensus       281 a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~------r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~g~~~~  352 (434)
T PRK11663        281 ANSAVSMFELGGFIGALVAGWGSDKLFNGN------RGPMNLIFAAGILLSVGSLWLMPF-ASYVMQAA-CFFTIGFFVF  352 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHhccCC------ccHHHHHHHHHHHHHHHHHHHccc-ccHHHHHH-HHHHHHHHHh
Confidence            999999999999999999999999994331      111   112222222222222222 22222211 1222222111


Q ss_pred             c-ccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          315 S-QAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       315 ~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      . .........|..| ++++++.|+.+...++|++++|.+.|.+.|+.| +...|...+++.+++.+..+...|++
T Consensus       353 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~  427 (434)
T PRK11663        353 GPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFVVISIAAGISALLLLPFLNAQ  427 (434)
T ss_pred             hHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1 1122344567666 899999999999999999999999999999998 99999999888888777666554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=1.4e-39  Score=298.26  Aligned_cols=354  Identities=14%  Similarity=0.135  Sum_probs=272.6

Q ss_pred             CccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHH
Q 016338            1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (391)
Q Consensus         1 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~   80 (391)
                      +++.+|++++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++  ++|++.+++.|+
T Consensus        28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~--a~~~~~ll~~r~  105 (393)
T PRK09705         28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL--YPQSALLLSSAL  105 (393)
T ss_pred             cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH--CcchHHHHHHHH
Confidence            368899999999999999999999999999999999999999999999999999999999999954  599999999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc-CchhHHHHHHHHHHHHHHHHhhcc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKV  159 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~  159 (391)
                      ++|++.+...+....++.|++| |+|+++++.++.+...|..+++.+++.+.++. +||+.+...++..++..+..+...
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  184 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS  184 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999997 88999999999999999999999999988875 899988776665544433333222


Q ss_pred             ccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhh
Q 016338          160 TNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA  239 (391)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  239 (391)
                      +++|+++++                ++    .+.++.+++|+.|...+..++....+....+|.|.|+++ +|.++.+++
T Consensus       185 ~~~~~~~~~----------------~~----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag  243 (393)
T PRK09705        185 AREVASSHK----------------TT----TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSG  243 (393)
T ss_pred             cCCCccccC----------------CC----cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhh
Confidence            222211100                00    012345677888888777777788888899999999988 799999999


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccch
Q 016338          240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGY  319 (391)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (391)
                      ...+...+++++++++.+++.||.++|         .....+.....+........+.........+.+.+.. ...+..
T Consensus       244 ~~~~~~~i~~i~g~~~~g~l~~r~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~  313 (393)
T PRK09705        244 SLLALMTLGQAAGALLMPAMARHQDRR---------KLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLG-GAFPLC  313 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccch---------HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhcc-chHHHH
Confidence            999999999999999999999999864         3333344444444333222122111122222222222 222333


Q ss_pred             h-hhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          320 L-LNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       320 ~-~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      . ....+..| +++++..|+.+...++++.++|.+.|++.|+.|++...+.+..++.++..+....+.+++
T Consensus       314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        314 LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3 33344444 689999999999999999999999999999999888888888888777777666555443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=3.5e-38  Score=291.27  Aligned_cols=358  Identities=20%  Similarity=0.206  Sum_probs=275.7

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++..|.+.+|+|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.+++++  +++++.+++.|++
T Consensus        35 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l  112 (406)
T PRK11551         35 GVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ--AWDFPSLLVARLL  112 (406)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH--hccHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999998888744  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .|++.+...+...+++.|++|+|+|++++++.+.+..+|..+++.+++.+.+..+||+.|++.++..++..+......||
T Consensus       113 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  192 (406)
T PRK11551        113 TGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPE  192 (406)
T ss_pred             HHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999888888999999999887777666666666777


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhc---CCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchh
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLS---KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQA  238 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  238 (391)
                      +|++++++++++.              ++...++.++   ++..+......+......+....|.|.++++ .|+++.+.
T Consensus       193 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~  257 (406)
T PRK11551        193 SRAFAQAAGAGKQ--------------RAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQA  257 (406)
T ss_pred             ChhHHhccCcchh--------------hhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhh
Confidence            6543221110000              0001112222   2233444444555556667778899999988 79999999


Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccc
Q 016338          239 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG  318 (391)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (391)
                      +.......++.++++++.|++.||+++|         ..+..+.+...+........++.+.......+.+.......+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  328 (406)
T PRK11551        258 GLVQIAFNIGGALGSLLIGALMDRLRPR---------RVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSV  328 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999864         3333344444444444444444444333333333333334455


Q ss_pred             hhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          319 YLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       319 ~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      ......|..| ++|+++.|+.+...+++..++|.+.|.+.|+.+++...+.......+++.++.+...
T Consensus       329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            5666777766 899999999999999999999999999999877677777777777777666655443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=5.3e-38  Score=287.20  Aligned_cols=356  Identities=17%  Similarity=0.170  Sum_probs=269.8

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++.+|.+++|+|.|.++.|+..+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++++  ++|++.+++.|++
T Consensus        23 ~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~--~~~~~~l~~~r~l  100 (382)
T PRK10091         23 MGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL--SSSYLMLAIGRLV  100 (382)
T ss_pred             HhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999854  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .|++.+...+....++.|++|+++|++++++...+..+|..+++++++.+.+..|||+.|.+.+++.++..+..++..||
T Consensus       101 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~  180 (382)
T PRK10091        101 SGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPD  180 (382)
T ss_pred             HHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999988888899999999999999999999999999999999999999999999999999998877766666666676


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHH
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  241 (391)
                      .+++++.   +.                 ++..+.+|+++.|......++.....+...++.+.++++..|.++.+.+.+
T Consensus       181 ~~~~~~~---~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~  240 (382)
T PRK10091        181 IRDEAKG---GL-----------------REQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFI  240 (382)
T ss_pred             CCccccc---CH-----------------HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            5432110   00                 011245677777776665555555555666777888888789999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhh-cCCchhHHHHH-HHHHHHhhhhcccch
Q 016338          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN-YAKSPAVAAVL-ITIALSLSSFSQAGY  319 (391)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~  319 (391)
                      .+...++..+++++.+++.||+++|         .....+.....+..+... ..++.+..... .+...+..+...+..
T Consensus       241 ~~~~~~~~~ig~~~~g~l~~r~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  311 (382)
T PRK10091        241 MMLVGLGMVLGNLLSGRLSGRYSPL---------RIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQ  311 (382)
T ss_pred             HHHHHHHHHHHhHHHheeccccCch---------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            9999999999999999999999864         333344444444443332 22333332222 222222222222222


Q ss_pred             hhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCccc
Q 016338          320 LLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERV  390 (391)
Q Consensus       320 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (391)
                      ....++..+ +.++.+  ..+...++|..++|.+.|.+.|..++|+..+...++..++.........++|++
T Consensus       312 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (382)
T PRK10091        312 ILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQ  381 (382)
T ss_pred             HHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            233444444 445544  346778899999999999999976669999998877777776666555554443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=1.7e-37  Score=284.35  Aligned_cols=345  Identities=17%  Similarity=0.172  Sum_probs=268.8

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~   82 (391)
                      +.+|++.+|+|.|+++.++..+.+.++..+++++.|+++||+|||+.+..+..+.+++.+++++  ++|++.+++.|+++
T Consensus        41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~  118 (394)
T PRK10213         41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF--ANSFSLLLIGRACL  118 (394)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH--HChHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999998854  49999999999999


Q ss_pred             HhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccC
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~  162 (391)
                      |++.+...+...+++.|++|+|+|++++++.....++|..++|++++.+.+.+|||+.|++.+++.++..+......||+
T Consensus       119 G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        119 GLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998877776555544445554


Q ss_pred             CCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHh
Q 016338          163 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFS  242 (391)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  242 (391)
                      ++++++                    ..++.++.+|+|.++...+..++.........++.++++.+++|+++.+.+...
T Consensus       199 ~~~~~~--------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~  258 (394)
T PRK10213        199 PGEPSH--------------------QKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVL  258 (394)
T ss_pred             Cccccc--------------------chhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence            321110                    011345778899998877766666666666677764444455799999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhh
Q 016338          243 AVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLN  322 (391)
Q Consensus       243 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (391)
                      ...+++..++..+.+++.||.+         ++...............+....++.+......++.+...+...+.....
T Consensus       259 ~~~~~~~iig~~~~~~l~~r~~---------~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~  329 (394)
T PRK10213        259 LSFGIASFVGTSLSSFILKRSV---------KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTW  329 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc---------hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            9999999999999999999854         2233333333233323333333344444444444444445556666666


Q ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHH
Q 016338          323 IQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTI  379 (391)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  379 (391)
                      .++..|+++++..+......++|..+||.+.|.+.|..| +...+...+...++..+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        330 ITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHHHH
Confidence            666667777788888888889999999999999999988 77777776665554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=3.5e-38  Score=288.29  Aligned_cols=350  Identities=18%  Similarity=0.208  Sum_probs=275.4

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++.+|.+.+|+|+|+++.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++++  ++|++.+++.|++
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  100 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI--ADSLAALYLTYGL  100 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999854  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .|++.+...+.....+.|++| |+|+++.++...+.++|..+++++.+.+.+..|||+.|++.+++.++..+..++..+|
T Consensus       101 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       101 ASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             HhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence            999999888888889999996 7899999999999999998887777777788899999999999888877776666655


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHH
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  241 (391)
                      +|+++++++++             .+++..+.++.+|+|+++......+...........+.+.|.++ +|.+..+.+..
T Consensus       180 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  245 (377)
T TIGR00890       180 PPGQLIKTNIE-------------VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLA  245 (377)
T ss_pred             CchhccccCcc-------------cchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHH
Confidence            44322111000             00111245678899999888777777766666667777778766 78888888999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCch--hHHHHHHHHHHHhhhhcccch
Q 016338          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP--AVAAVLITIALSLSSFSQAGY  319 (391)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  319 (391)
                      .+...++..+++++.|++.||+++|         ..+..+.....+........++.  ........+.....+...+..
T Consensus       246 ~~~~~~~~~~~~~~~g~l~dr~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  316 (377)
T TIGR00890       246 VSISSIFNGGGRPFLGALSDKIGRQ---------KTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLF  316 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhcc
Confidence            9999999999999999999999854         33444555555555444433322  222222222233333334445


Q ss_pred             hhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHH
Q 016338          320 LLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTT  378 (391)
Q Consensus       320 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  378 (391)
                      .....|..| ++|+++.|+.+....+|..++|.+.|.+.|+.| ++..+.+.+++.+++.
T Consensus       317 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       317 PSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence            566677666 899999999999999999999999999999988 8888888887776654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=2.3e-37  Score=288.84  Aligned_cols=380  Identities=19%  Similarity=0.246  Sum_probs=271.1

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhh--ccchHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA--THSTASLLAVR   79 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~r   79 (391)
                      ++.+|.+.++ |.|+++.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+.+++..  +++++.+++.|
T Consensus        49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  127 (452)
T PRK11273         49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL  127 (452)
T ss_pred             HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence            3567888888 99999999999999999999999999999999999999999999999988875531  24788889999


Q ss_pred             HHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHH-HHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhc
Q 016338           80 AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNV-VGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~-~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      ++.|++.+...+.....+.|++|+|+|++++++++.+.++|.. .+|+++..+....|||+.|++.+++.++..++..++
T Consensus       128 ~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~  207 (452)
T PRK11273        128 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAM  207 (452)
T ss_pred             HHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888888999999999999999999999999874 455544444444599999999988888776777777


Q ss_pred             cccCCCCCCCCChhHHHHHHcCC-Ccc-cccCCCcc--HHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCC
Q 016338          159 VTNDPCNSPFVSKSELRLIQAGK-SDS-VKKRNPPS--LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN  234 (391)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  234 (391)
                      .||+|++....++++.+...++. +++ +++.+..+  .+.++|+|.+|...+..++.+...+....|+|.|++++.|++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s  287 (452)
T PRK11273        208 MRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFA  287 (452)
T ss_pred             ccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            77776543222111111000000 000 01111111  134678999999888888888888888999999999988999


Q ss_pred             cchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHH--hhcCCchhHHHHHHHHHHHhh
Q 016338          235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLC--LNYAKSPAVAAVLITIALSLS  312 (391)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  312 (391)
                      ..+++.......++..++.++.|+++||+++++      |+...........+....  .....+...........+...
T Consensus       288 ~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  361 (452)
T PRK11273        288 LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN------RGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLI  361 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC------cchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence            999998888888999999999999999995431      111111111222222222  212222222222211111111


Q ss_pred             hhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHH-HHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCcc
Q 016338          313 SFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAII-STIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER  389 (391)
Q Consensus       313 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (391)
                      ............|..| +.+|+++|+.+...++|+.+ +|.+.|.+.|+.| ++..|.+.++..+++.+....+.+.++
T Consensus       362 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~  439 (452)
T PRK11273        362 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVMIGEK  439 (452)
T ss_pred             HhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            1111122334456666 89999999999999998765 7999999999998 999998888888888777665554443

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=1.9e-37  Score=284.73  Aligned_cols=354  Identities=17%  Similarity=0.152  Sum_probs=271.2

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++.+|++.+|+|+|+++.+++.+.+.+++.+++++.|++.||+|||+.+..+..+.+++.+++++  +++++.+++.|++
T Consensus        27 g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~l  104 (394)
T PRK03699         27 GMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF--SHSLALFSIAMFV  104 (394)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cchHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999998854  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh-hcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-TIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~-~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      +|++.+...+...+++.|++|+|+|+++++..+....+|..++|.+.+.+.+ ..|||+.|.+.+++.++..++.++  +
T Consensus       105 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~  182 (394)
T PRK03699        105 LGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--S  182 (394)
T ss_pred             HHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--c
Confidence            9999998888899999999999999999999999999999999999887764 579999999988877765554433  2


Q ss_pred             cCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhH
Q 016338          161 NDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW  240 (391)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  240 (391)
                      +.|+.+++++++            +++..    ++ ..+|.++...+..++....++.+..|.|.|+++++|+|+.+++.
T Consensus       183 ~~p~~~~~~~~~------------~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~  245 (394)
T PRK03699        183 EFPALGKHAPKA------------DKPVA----KE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGN  245 (394)
T ss_pred             CCccccccCccc------------cCccc----cc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhH
Confidence            222211110000            00000    11 12456777777777777778888999999998889999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchh
Q 016338          241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL  320 (391)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (391)
                      +.+...++..+++++.+++.||+++|       +  .+........+....+...++........+..+...+...+...
T Consensus       246 ~~~~~~~~~~ig~~~~g~l~dr~~~~-------~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~  316 (394)
T PRK03699        246 LVSNFWMAYMVGMWIFSFIVRFFDLQ-------R--ILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII  316 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchh-------h--HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999865       2  22233333333344443444443333333333333334445555


Q ss_pred             hhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          321 LNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      ....+..|+++++..|..+...++|..++|.+.|++.|..| +...++...++.+++.++.....+
T Consensus       317 ~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        317 TLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             HHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHHHH
Confidence            56667777777888899999999999999999999999988 778887777777777665554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=5.9e-37  Score=287.13  Aligned_cols=370  Identities=17%  Similarity=0.117  Sum_probs=273.5

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++.+|.+.+|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.++  +++++.+++.|++
T Consensus        56 ~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~s~~~l~~~r~l  133 (476)
T PLN00028         56 APLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL--VSSATGFIAVRFF  133 (476)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999888854  4899999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh---------hcCchhHHHHHHHHHHHHH
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS---------TIGISGPFILFSSLGLLWL  152 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~---------~~gwr~~f~~~~~~~~~~~  152 (391)
                      .|++.+.. +....+++|++|+++|++++++.....++|..+++.+.+.+.+         ..|||+.|++.+++.++..
T Consensus       134 ~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~  212 (476)
T PLN00028        134 IGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMG  212 (476)
T ss_pred             HHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Confidence            99998865 4456788999999999999999988888888887776655432         2589999999999888777


Q ss_pred             HHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhC
Q 016338          153 STWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN  232 (391)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  232 (391)
                      +..++..++.|+++.  ++.+    ++.  +.++++....+++.++++++|...+..+..........++.|.|+.+.+|
T Consensus       213 l~~~~~~~~~p~~~~--~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g  284 (476)
T PLN00028        213 ILVLTLGQDLPDGNY--RELK----KSG--TMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFG  284 (476)
T ss_pred             HHHHHHcCcCCCCch--hhHH----hcC--ccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence            766666555443221  0100    000  00111112345677889999888887777777777788899999988889


Q ss_pred             CCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 016338          233 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS  312 (391)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (391)
                      +++.+++.+.+...+++.+++++.|+++||+++|....  .|+........+.++....+...++........++.....
T Consensus       285 ~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~--~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~  362 (476)
T PLN00028        285 LSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR--GRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFV  362 (476)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc--hhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998763211  1334444444444444444444444333333333333333


Q ss_pred             hhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          313 SFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      ....+.......+..|+++|+..|+.+..+++|+.++|.+.+  .+..++|...|.+.+++.+++.++.++.+.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~  434 (476)
T PLN00028        363 QAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPVAFIHF  434 (476)
T ss_pred             HHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHHHheec
Confidence            333344555666778899999999998877777777777654  222345889999999888888888776653

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=3.7e-38  Score=288.36  Aligned_cols=356  Identities=19%  Similarity=0.226  Sum_probs=270.5

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++..|.+.+++|.|.++.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++.+++  ++++.+++.|++
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   92 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--TSLWVMAALWAL   92 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--hhHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999998544  899999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHh-hHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGL-LLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~-~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      .|++.+...+...+++.|++|+|+|++++++.+....+|..+++ .+++.+.+..+||+.|++.+++.++..+..+...|
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (379)
T TIGR00881        93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLR  172 (379)
T ss_pred             HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeC
Confidence            99999999999999999999999999999999999999999999 57777778889999999998888877777777777


Q ss_pred             cCCCCCCCCChhHHHHHH--cCC--CcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcc
Q 016338          161 NDPCNSPFVSKSELRLIQ--AGK--SDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (391)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  236 (391)
                      |+|++++..++++.+..+  +..  ++++.+..+...++.+|+|.++...+..+...........+.|.|+++.+|.++.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  252 (379)
T TIGR00881       173 DSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKE  252 (379)
T ss_pred             CCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            766543221111110000  000  0011111223456788999999999888888888889999999999998899999


Q ss_pred             hhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc--CCchhHHHHHHHHHHHhhhh
Q 016338          237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSF  314 (391)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  314 (391)
                      +.+.......++..+++++.+++.||..+++      +....................  ..+...........+.....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  326 (379)
T TIGR00881       253 KASWAFTLYELGGLVGTLLAGWLSDKLFNGR------RGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYG  326 (379)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHcCCc------chHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999975441      222222222222222222222  12222222222222222222


Q ss_pred             cccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHH
Q 016338          315 SQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAF  366 (391)
Q Consensus       315 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~  366 (391)
                      ..+.......|..| ++|+++.|+.+...++|+.++|.+.|.+.|+.| ++..
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~  378 (379)
T TIGR00881       327 PQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAGA  378 (379)
T ss_pred             hhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-cccc
Confidence            22333455666666 899999999999999999999999999999987 6543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-37  Score=270.31  Aligned_cols=360  Identities=19%  Similarity=0.237  Sum_probs=307.2

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhc-cchHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT-HSTASLLAVRA   80 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~r~   80 (391)
                      +++.+.+.+|+|+|++|.+++.++..+...+..++.|.+.||+|.|++...+.++..+-.+..+++.. ++++++++.+.
T Consensus        34 s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gl  113 (417)
T COG2223          34 SPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGL  113 (417)
T ss_pred             HHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999998876632 45569999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC---chhHHHHHHHHHHHHHHHHhh
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG---ISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g---wr~~f~~~~~~~~~~~~~~~~  157 (391)
                      +.|++.+ .+......+++|||+|++|.++|+.. ..|+|..+...+++.+....+   ||....+..+..++..+..++
T Consensus       114 l~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~  191 (417)
T COG2223         114 LLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL  191 (417)
T ss_pred             HHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999865 45889999999999999999999999 999999999999999999999   999999999999998888888


Q ss_pred             ccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcch
Q 016338          158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ  237 (391)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  237 (391)
                      ...|.|+.++..++.+.                ..++.+.++|+.|.+.+.++..+..+.++..++|.|+++++|.++.+
T Consensus       192 ~~~d~p~~r~~~~~~~~----------------~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~  255 (417)
T COG2223         192 GMNDVPEHRASVKPQLP----------------AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT  255 (417)
T ss_pred             HhCCChhhhccccccch----------------hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence            88888775322111110                25678889999999999999999999999999999999999999999


Q ss_pred             hhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcC-------CchhHHHHHHHHHHH
Q 016338          238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-------KSPAVAAVLITIALS  310 (391)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  310 (391)
                      ++.+.......+.+.++++|+++||+|.+       |  .+...+..+.++.......       .+.......++....
T Consensus       256 Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-------r--v~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~  326 (417)
T COG2223         256 AGLIAFLFPLIGALARPLGGWLSDRIGGR-------R--VTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFV  326 (417)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhhhccch-------h--HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999965       3  3333444444444444332       233444444555666


Q ss_pred             hhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          311 LSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      +.+..+...+..+...+|++.|.+.|+...++.+|++.-|...|...|..|++...|++...+.+++.+..+...+++
T Consensus       327 ~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         327 FAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             HhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            677788888999999999999999999999999999999999999999999999999999999999998776655443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.2e-36  Score=282.52  Aligned_cols=357  Identities=17%  Similarity=0.132  Sum_probs=251.9

Q ss_pred             ccchhhHHHHhC---CChhhHHHHHHHH---HHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchH--
Q 016338            2 SVAVVPLAAKFG---WSSSFLGIVQSSF---LWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTA--   73 (391)
Q Consensus         2 ~~~~~~i~~~~~---~s~~~~g~~~s~~---~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~--   73 (391)
                      +...|.+.+|++   .+..+.+...+.+   .++..+++++.|+++||+|||+++..+..++++++++++++  +++.  
T Consensus        42 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~  119 (432)
T PRK10406         42 SFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL--PGYETI  119 (432)
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc--CCchhH
Confidence            456788899985   5555554544444   44555999999999999999999999999999999999554  7664  


Q ss_pred             ------HHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHH--------hhcCchh
Q 016338           74 ------SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISG  139 (391)
Q Consensus        74 ------~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~--------~~~gwr~  139 (391)
                            .+++.|+++|++.|...+...++++|++|+|+|+++.++.+.+...|..+++.+...+.        +.+|||+
T Consensus       120 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~  199 (432)
T PRK10406        120 GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRI  199 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence                  68899999999999999999999999999999999999999888888888887765543        2579999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHH-HHHHHHH
Q 016338          140 PFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANIT-NNWGYFV  218 (391)
Q Consensus       140 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  218 (391)
                      +|++.+++.++... .....||+|+++       .+.          +++..++++++|+|+.+...+...+ ....++.
T Consensus       200 ~F~i~~~~~ll~~~-~~~~~~e~~~~~-------~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  261 (432)
T PRK10406        200 PFALGAVLAVVALW-LRRQLDETSQQE-------TRA----------LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYT  261 (432)
T ss_pred             HHHHHHHHHHHHHH-HHhcCCCCchHH-------Hhh----------hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99998777665433 233344443211       000          0012257888899888776665544 3667788


Q ss_pred             HHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHH---HH-hhc
Q 016338          219 LLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSL---LC-LNY  294 (391)
Q Consensus       219 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~  294 (391)
                      +.+|.|.|+++.+|.+..+.+.......+...+++++.|+++||++||       + .. ........+..   .. ...
T Consensus       262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr-------~-~~-~~~~~~~~~~~~~~~~~~~~  332 (432)
T PRK10406        262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR-------T-SM-LCFGSLAALFTVPILSALQN  332 (432)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-------H-HH-HHHHHHHHHHHHHHHHHHHc
Confidence            889999999888899988888888888888888899999999999975       2 22 22222221111   11 111


Q ss_pred             CCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHH-HHHHHHHHhhHhhccccchhHHHHHHHH
Q 016338          295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLGSFQAFLTVTAG  372 (391)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-g~~i~~~~~g~l~~~~g~~~~~~~~~~~  372 (391)
                      .++.........+..+..+...+....+..|.+| +.|+++.|+.+..++. .+...|.+.+.+ +..|++...+...++
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~  411 (432)
T PRK10406        333 VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTL  411 (432)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHH
Confidence            2223322222222323333333445667788887 7999999999988775 345577777744 666767777777777


Q ss_pred             HHHHHHHHHHHhccCc
Q 016338          373 LYFVTTIFWNLYSTGE  388 (391)
Q Consensus       373 ~~~~~~~~~~~~~~~~  388 (391)
                      ..+++.+..++.+++.
T Consensus       412 ~~~i~~~~~~~l~~~~  427 (432)
T PRK10406        412 MAVVAFLVSLMLHRKG  427 (432)
T ss_pred             HHHHHHHHHHHhhhcc
Confidence            7777766666555443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=9e-37  Score=287.66  Aligned_cols=345  Identities=17%  Similarity=0.125  Sum_probs=268.5

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      +..+|++.+|+|.|.++.+|+.+.+.+++..++++.|+++||+|||+++..+..+..++++++++  ++|++.++++|++
T Consensus        26 ~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~--a~~~~~li~~r~l  103 (495)
T PRK14995         26 HVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAF--SPTASWLIATRAL  103 (495)
T ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999955  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhc-CccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWF-PSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      +|+|.+...+.....+.+++ |+|+|++++++......+|..+||.+++.+.++.|||+.|++...+.++..++..+..|
T Consensus       104 ~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~  183 (495)
T PRK14995        104 LAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVP  183 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999998888888887776 67899999999999999999999999999999999999999988888877777777777


Q ss_pred             cCCCCCCCCChhHHH------------HHHcCCC-------------------------cccccCCCccHHHhhcCCchH
Q 016338          161 NDPCNSPFVSKSELR------------LIQAGKS-------------------------DSVKKRNPPSLRHLLSKLPSW  203 (391)
Q Consensus       161 ~~~~~~~~~~~~~~~------------~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~  203 (391)
                      |+++++++..+....            ..++...                         +.+.+++. -..+++|+|.++
T Consensus       184 ~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~-~~~~lf~~~~~~  262 (495)
T PRK14995        184 RQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPM-IDMRLFTHRIIL  262 (495)
T ss_pred             CCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cCHHHhCCcccH
Confidence            765433221110000            0000000                         00111111 124788999998


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhH
Q 016338          204 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  283 (391)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  283 (391)
                      ...+..++......+...+.|.|+++.+|+|+.+++....+..++..++.++.|++.||+++|         ..+..+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~---------~~~~~g~~  333 (495)
T PRK14995        263 SGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR---------LVATGGMA  333 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch---------HHHHHHHH
Confidence            888888888888888889999999999999999999999999999999999999999999954         34445555


Q ss_pred             hhHHHHHHhh---cCCchhHHHHHHHHHHHhhhhcccchhhhhhh-ccccchhHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 016338          284 GPGVSLLCLN---YAKSPAVAAVLITIALSLSSFSQAGYLLNIQE-IAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQ  358 (391)
Q Consensus       284 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~  358 (391)
                      ...++...+.   ..++.+.......+.+...+...+.......+ .++++++.+.++.+..+++|+.+|+.+.|.+.+
T Consensus       334 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        334 LSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544443332   22233333333333333334444444444444 445899999999999999999999999998864

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=1.9e-36  Score=276.85  Aligned_cols=352  Identities=16%  Similarity=0.080  Sum_probs=268.6

Q ss_pred             cchhh-HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHH-HHHHHHHHHhhhhhhhccchHHHHHHHH
Q 016338            3 VAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAW-GVALWSLSTLLTPWAATHSTASLLAVRA   80 (391)
Q Consensus         3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~r~   80 (391)
                      |.+|. +++++|.|+++.|++.+.+.+...+.+++.|+++||+||||.+.. +..+..++.+++  +.++|++.+++.|+
T Consensus        18 ~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~   95 (375)
T TIGR00899        18 PTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF--AWNRNYFLLLVLGV   95 (375)
T ss_pred             hHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHH
Confidence            45565 578999999999999999999999999999999999999887654 555556666777  44599999999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhH--HHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASA--IGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~--~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      +.|.+.+...|...++..|+.|+++|++.  .+......++|..++|.+++.+.+..|||+.|++.++..++..+..++.
T Consensus        96 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  175 (375)
T TIGR00899        96 LLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLF  175 (375)
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            99988888888888999999887777654  6788888999999999999999999999999999998887777776666


Q ss_pred             cccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchh
Q 016338          159 VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQA  238 (391)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  238 (391)
                      .||+|+++++.+                  ...+.++.+++|+++......+...........+.|.|+++++|.++.+.
T Consensus       176 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  237 (375)
T TIGR00899       176 LPSYPRGAPGAL------------------TRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLA  237 (375)
T ss_pred             CCCcccCccccc------------------CcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHH
Confidence            777654322110                  01123446677877776666666555566667788999988899999999


Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccc
Q 016338          239 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG  318 (391)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (391)
                      +...........++.++.|++.||+++|         ..+..+.....+........++.+.......+.+...+...+.
T Consensus       238 g~~~~~~~~~~~~~~~~~g~l~~r~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  308 (375)
T TIGR00899       238 GLMMGTAAGLEIPFMLLAGYLIKRFGKR---------RLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGI  308 (375)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888777777888889999999999965         2233333333333333333334443333333333334444555


Q ss_pred             hhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          319 YLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      ...+..|..|++++++.++.+...++|..++|.+.|.+.|..| ++..+.+.+++.+++.++....
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       309 GMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhee
Confidence            6677788888888899999999999999999999999999988 8999999888888887776554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=7.5e-36  Score=274.75  Aligned_cols=359  Identities=15%  Similarity=0.132  Sum_probs=265.4

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhh-hh-ccchHHHHHHHHH
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AA-THSTASLLAVRAF   81 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-a~-~~~~~~~~~~r~l   81 (391)
                      .+|.+.+|+|.|+++.|++.+.+.+++.+++++.|+++||+||||++..+..+.+++.+++.+ .. .++++.+++.|++
T Consensus        35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i  114 (402)
T TIGR00897        35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGI  114 (402)
T ss_pred             hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence            456777899999999999999999999999999999999999999999999999888765421 22 3578888999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhH-HHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGN-VVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~-~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      .|++.+...+...+.+.|++|+|+|++++|+.+...++|. .++|.+++.+.+.+||+..++.......+..++..+..+
T Consensus       115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  194 (402)
T TIGR00897       115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNK  194 (402)
T ss_pred             HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999988878888889999999999999999999999997 689999999888889766655444333333333344444


Q ss_pred             cCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhH
Q 016338          161 NDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW  240 (391)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  240 (391)
                      |.+++++++++++            .++..+++++++|+|+++...+..++.....+...++.|.|+++ +|+++.+.+.
T Consensus       195 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~  261 (402)
T TIGR00897       195 DIFTPQHMQTREK------------FSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQ  261 (402)
T ss_pred             CCCCcccccCCcc------------hhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHH
Confidence            4322111100000            00112246678999999988888888888888899999999977 8999999998


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHH---HHHhh--cCCchhHHHHHHHHHHHhhhhc
Q 016338          241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS---LLCLN--YAKSPAVAAVLITIALSLSSFS  315 (391)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~  315 (391)
                      ......+++.++++..|++.||+++|       +.. ...+.+...+.   +....  ..++.+......++.+...+..
T Consensus       262 ~~~~~~~~~~ig~~~~g~l~dr~~~~-------~~~-~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~  333 (402)
T TIGR00897       262 IWGTFFFTNIVFNVIFGIVGDKLGWM-------NTV-RWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGY  333 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcch-------hHH-HHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999865       222 12222222221   11111  1123333322222222222222


Q ss_pred             ccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          316 QAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      .+ ......+..|++|+++.|+.+...++++.++|.+.|.+.|..| +...+++.+++.+++.++..+.|
T Consensus       334 ~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~~~~~~~~  401 (402)
T TIGR00897       334 VP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSAFLTAFIR  401 (402)
T ss_pred             HH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHhc
Confidence            22 3445567888999999999999999999999999999999988 88888888888888777766554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=5.8e-36  Score=282.01  Aligned_cols=368  Identities=17%  Similarity=0.142  Sum_probs=251.3

Q ss_pred             ccchhhHHHHhCCChhh-HHH-----HHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHH-
Q 016338            2 SVAVVPLAAKFGWSSSF-LGI-----VQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTAS-   74 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~-~g~-----~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~-   74 (391)
                      +...|.+.++++.+.++ .++     ..++..+++.+++++.|+++||+|||+++.++.+++++++++++++  +|++. 
T Consensus        36 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~--~~~~~~  113 (490)
T PRK10642         36 GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI--PSYATI  113 (490)
T ss_pred             HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc--ccHHHH
Confidence            45678889998654322 122     2577889999999999999999999999999999999999999554  88864 


Q ss_pred             -------HHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHH--------hhcCchh
Q 016338           75 -------LLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISG  139 (391)
Q Consensus        75 -------~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~--------~~~gwr~  139 (391)
                             +++.|+++|++.|...+...++++|++|+|+||++.++.+.+..+|..+++.+...+.        +.+|||+
T Consensus       114 g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~  193 (490)
T PRK10642        114 GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI  193 (490)
T ss_pred             HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence                   8899999999999999999999999999999999999999998899888887665543        2579999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcC-CchHH-HHHHHHHHHHHHH
Q 016338          140 PFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSK-LPSWT-VIIANITNNWGYF  217 (391)
Q Consensus       140 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~  217 (391)
                      .|++.+++.++ .+......||+|+..+..++.+     +...+...++++.++++++++ ++.+. .....++....++
T Consensus       194 ~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (490)
T PRK10642        194 PFFIALPLGII-GLYLRHALEETPAFQQHVDKLE-----QGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYY  267 (490)
T ss_pred             HHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhh-----hhccccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99997765554 3334456677665321110000     000000011123356666653 23222 2233344566778


Q ss_pred             HHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhH-HHH--HHhhc
Q 016338          218 VLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPG-VSL--LCLNY  294 (391)
Q Consensus       218 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~  294 (391)
                      ....|.|.|+++.+|++..+.+.......++..++.++.|+++||+|||         ..+..+.+... ...  +....
T Consensus       268 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr---------~~~~~~~~~~~~~~~~~~~~~~  338 (490)
T PRK10642        268 MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR---------PFVILGSVALFVLAIPAFILIN  338 (490)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999999887899988888777778888999999999999999965         23333332211 111  11222


Q ss_pred             CCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHH
Q 016338          295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGL  373 (391)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~  373 (391)
                      .++........++.....+...........+..| +.|+++.|..+.....++.++|.+.+++.+..+++...+....+.
T Consensus       339 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~  418 (490)
T PRK10642        339 SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVV  418 (490)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            2233333222222222223333444555667777 899999998777777888999999999988766455555555555


Q ss_pred             HHHHHHHHHHhcc
Q 016338          374 YFVTTIFWNLYST  386 (391)
Q Consensus       374 ~~~~~~~~~~~~~  386 (391)
                      .+++.+..++.+.
T Consensus       419 ~~i~~~~~~~~pe  431 (490)
T PRK10642        419 AVIGLITGVTMKE  431 (490)
T ss_pred             HHHHHHHHHHhcc
Confidence            5555555555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=2.1e-35  Score=272.49  Aligned_cols=340  Identities=12%  Similarity=0.079  Sum_probs=264.3

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      .+.+|.+.+|+|.|+++.++..+.+.+++.+++++.|+++||+|||+++..+..+..++.++.++  +++++.+++.|++
T Consensus        33 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l  110 (406)
T PRK15402         33 QPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL--AQSIEQFTLLRFL  110 (406)
T ss_pred             hcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH--HccHHHHHHHHHH
Confidence            36788899999999999999999999999999999999999999999999999999999888844  4899999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      +|++.+...+...+.+.|++|+++|.+..++......+|..++|.+++.+.++.+||+.|++.+++.++..+..++..||
T Consensus       111 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  190 (406)
T PRK15402        111 QGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPE  190 (406)
T ss_pred             HHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999988889999999999999999999999998999999999999999998999999999888887776666556666


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHH
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  241 (391)
                      ++++++++.+  .            ++..++++++++||+++...+..++..........+.|.++++.+|.++.+.+..
T Consensus       191 ~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~  256 (406)
T PRK15402        191 TAGRVGEKLS--L------------KELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLL  256 (406)
T ss_pred             CCcccccccc--H------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHH
Confidence            5432211100  0            0112246788999999988887777776666777788999888889999998888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc-----CCchhHHHHHHHHHHHhhhhcc
Q 016338          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY-----AKSPAVAAVLITIALSLSSFSQ  316 (391)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  316 (391)
                      .....++..++.++.+++.||+++|         ..+..+.+...++......     ..+.........+.....+...
T Consensus       257 ~~~~~~~~~~g~~~~g~l~~r~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~  327 (406)
T PRK15402        257 QVPVFGALIAGNLTLARLTSRRPLR---------SLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLAN  327 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHh
Confidence            7777788899999999999999864         3333444444333333221     1223333333333333333334


Q ss_pred             cchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHH
Q 016338          317 AGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAF  366 (391)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~  366 (391)
                      +..........|+++|+..+..+....++..+++.+.+.+.+..+.+...
T Consensus       328 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  377 (406)
T PRK15402        328 AGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFN  377 (406)
T ss_pred             hhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Confidence            44444444455689999999999999999999999999999987744433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=4.3e-36  Score=273.35  Aligned_cols=338  Identities=16%  Similarity=0.124  Sum_probs=267.2

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhcc-----chHHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH-----STASLLA   77 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~-----~~~~~~~   77 (391)
                      +.+|.+.+|++.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.++.++.  +     +++.+++
T Consensus        20 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   97 (365)
T TIGR00900        20 VALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV--ALLGGLNIWQVYV   97 (365)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH--HHcCCCcHHHHHH
Confidence            56788899999999999999999999999999999999999999999999999988888877544  5     9999999


Q ss_pred             HHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhh
Q 016338           78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  157 (391)
                      .|++.|++.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+.+..|||+.|++.++..++..+..+.
T Consensus        98 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900        98 LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999887766665544443


Q ss_pred             ccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHH-HhhHHHHHhhhCCCcc
Q 016338          158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL-SWMPIYFNTVFNVNLK  236 (391)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~  236 (391)
                      ..+++++++++.+.+++ .         .++..+.+++.+|+|.++...+..+.......... .+.|.|.++.+|.++.
T Consensus       178 ~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (365)
T TIGR00900       178 VRIPELAASEIQALSNA-V---------LRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGST  247 (365)
T ss_pred             cccccCCCccccccchh-H---------HHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchH
Confidence            33222221111110100 0         00112246778899999888888887777777766 8889999887899999


Q ss_pred             hhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCc-hhHHHHHHHHHHHhhhhc
Q 016338          237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS-PAVAAVLITIALSLSSFS  315 (391)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  315 (391)
                      +.+.......++..++.++.+++.||.+++         .....+....++........++ .+...+..++.+...+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  318 (365)
T TIGR00900       248 HYGWVLAAFGLGALLGALLLGLLGRYFKRM---------ALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPI  318 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchh---------HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999854         3444445555555555544443 444444444444444555


Q ss_pred             ccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          316 QAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       316 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      .+.......|..| ++|+++.|+.+...+++..++|.+.|.+.|+.|
T Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       319 NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6666777777666 899999999999999999999999999998764

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=2.2e-36  Score=281.36  Aligned_cols=377  Identities=19%  Similarity=0.263  Sum_probs=272.3

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhh--ccchHHHHHHHHH
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA--THSTASLLAVRAF   81 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~r~l   81 (391)
                      ..|.+++ +|.|+++.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.++.++..  .++++.+.+.|++
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  127 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFL  127 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            4566665 699999999999999999999999999999999999999999999999888764331  2567788899999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHH-hhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-STIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~-~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      .|++.+...+.....+.|++|+|+|++++++.+...++|..+++.+.+... +..+||..|++.+++.++..+..++..|
T Consensus       128 ~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       128 NGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999988989999999999999999999999999999999988876544 4579999999999888887766677777


Q ss_pred             cCCCCCCCCChhHHHH-HHcCCCcccccC--CCcc-HHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcc
Q 016338          161 NDPCNSPFVSKSELRL-IQAGKSDSVKKR--NPPS-LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (391)
Q Consensus       161 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  236 (391)
                      |+|++++..+.++.+. .+++..++++++  .++. .+.++|+|.+|...+..++.+...+...++.|.|+++..|+++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~  287 (438)
T TIGR00712       208 DTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALD  287 (438)
T ss_pred             CCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChh
Confidence            7665422111111000 000000000000  0111 23478899999988888888888888889999999998899999


Q ss_pred             hhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH-HhHhhHHHHHHhhc--CCchhHHHHHHHHHHHhhh
Q 016338          237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI-GFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSS  313 (391)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  313 (391)
                      ++++...+..+.+++++++.|++.||++++       ++..... ......+....+..  ..+.+..... .+..+...
T Consensus       288 ~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~  359 (438)
T TIGR00712       288 KSSWAYFLYEYAGIPGTLLCGWMSDKVFKG-------NRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMIC-MIVIGFLI  359 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------cccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH-HHHHHHHH
Confidence            999999999999999999999999999654       2222111 11111111111111  1222222221 11111111


Q ss_pred             hcc-cchhhhhhhccc-cchhHHHHHHHHHHHHHH-HHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCccc
Q 016338          314 FSQ-AGYLLNIQEIAP-DCAGFLHGIANSAGTLAA-IISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERV  390 (391)
Q Consensus       314 ~~~-~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~-~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (391)
                      ... ........|..| ++|+++.|+.+...+.++ .++|.+.|.+.|+.| +...+.+..+..+++.+..+...+++|+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       360 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            111 111234556666 799999999999988875 689999999999988 9999988888888888887777777663

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=2.2e-35  Score=270.80  Aligned_cols=332  Identities=17%  Similarity=0.179  Sum_probs=260.8

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      .+..|.+.+|+|.|+++.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++.++  +++++.+++.|++
T Consensus        25 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l  102 (385)
T TIGR00710        25 LPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL--SNNIETLLVLRFV  102 (385)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH--HccHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999998844  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .|++.+...+...+++.|++|+|+|++++++.+....+|..+++.+++.+.++.+||+.|.+.++..++..+..++..||
T Consensus       103 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (385)
T TIGR00710       103 QAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPE  182 (385)
T ss_pred             HHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999888887776666666666


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHH
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  241 (391)
                      +++++++.++++               ..++.++.+|+|+++...+..............+.|.++++.+|.++.+.+.+
T Consensus       183 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  247 (385)
T TIGR00710       183 TLPYEARIQIST---------------YFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLL  247 (385)
T ss_pred             CCCCcccCCHHH---------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHH
Confidence            544332211110               11245778899999988887777777788888899999998899999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc---CC-chh-HHHHHHHHHHHhhhhcc
Q 016338          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY---AK-SPA-VAAVLITIALSLSSFSQ  316 (391)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~-~~~~~~~~~~~~~~~~~  316 (391)
                      .....++..+++++.+++.||+++|       +..  ..+.....+.......   .. +.. .......+.+...+...
T Consensus       248 ~~~~~~~~~~~~~~~g~l~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  318 (385)
T TIGR00710       248 FALNIIAMIFGGFLNGRFIKKWGAK-------SLL--RMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMIS  318 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHH-------HHH--HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999865       222  2233333322222211   11 122 22222233333334444


Q ss_pred             cchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 016338          317 AGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW  359 (391)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~  359 (391)
                      +.......|..|++++++.++.+.....++.+.+.+.+.+.+.
T Consensus       319 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~  361 (385)
T TIGR00710       319 SIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHGN  361 (385)
T ss_pred             HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5555666677788899999999999887666777677755444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=2e-36  Score=282.20  Aligned_cols=368  Identities=16%  Similarity=0.125  Sum_probs=274.4

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHH-HHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLA-VRA   80 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~r~   80 (391)
                      +..+|++.+++|.|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.++++++  ++++.+++ .|+
T Consensus        39 ~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~  116 (455)
T TIGR00892        39 TVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS--SNVIELYLTAGF  116 (455)
T ss_pred             hhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh--hhHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999988554  88888865 579


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      ++|++.+...+...+++.|+++ ++|+++.++.+.+..+|..++|++++.+.+.+|||+.|++.+++.++..+..++..+
T Consensus       117 l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       117 ITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             HHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999998877778888999996 889999999999999999999999999999999999999999887766555444444


Q ss_pred             cCCCCCCCCChhHHHHHHcCCCcc----cccCCCcc--HHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCC
Q 016338          161 NDPCNSPFVSKSELRLIQAGKSDS----VKKRNPPS--LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN  234 (391)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  234 (391)
                      +.+.++...++++....++...++    ...+...+  ..+++++|+++......++..........++|.|.++ .|++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s  274 (455)
T TIGR00892       196 VGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVD  274 (455)
T ss_pred             CCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCC
Confidence            322211100000000000000000    00000011  1257889999988888888888888888899999987 7999


Q ss_pred             cchhhHHhhhHHHHHHHHHHHHHHHHHHHH--hhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 016338          235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLI--KAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS  312 (391)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (391)
                      +.+++.+.++.+++.++++++.+++.||..  ++       ++..+..+....++..+.....++.+...+..++.+...
T Consensus       275 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-------~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~  347 (455)
T TIGR00892       275 EYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH-------VQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSF  347 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH-------HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999742  22       333333333333333333334444444444333333344


Q ss_pred             hhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHH
Q 016338          313 SFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIF  380 (391)
Q Consensus       313 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (391)
                      +...+.......|..| ++++++.|+.+...++|..++|.+.|.+.|..|++...|.+.++..+++.+.
T Consensus       348 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       348 GSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             chHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            4445555666666655 7899999999999999999999999999998876888888888777766553

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=7.7e-36  Score=277.40  Aligned_cols=346  Identities=15%  Similarity=0.164  Sum_probs=250.6

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++..|.+++|+|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++.++..+.+++.+++++  +++++.+++.|++
T Consensus        38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l  115 (426)
T PRK12307         38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL--ASGVIMLTLSRFI  115 (426)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999998854  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      +|++.+...+....++.|++|+|+|+++.++...+.++|.++++.+.+.+.+..+||+.|++.....++ .+......||
T Consensus       116 ~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~  194 (426)
T PRK12307        116 VGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPE  194 (426)
T ss_pred             HHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCC
Confidence            999999999999999999999999999999999999999999999999998889999999885433322 2221212233


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHH---HHHHHHHHHHHhhHHHHHhhhCCCcchh
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANI---TNNWGYFVLLSWMPIYFNTVFNVNLKQA  238 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~  238 (391)
                      +++.++    ++.+ .+++.+++..+....++++++|+|.++.......   ...........++|.|+++ .|.++.+.
T Consensus       195 ~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~  268 (426)
T PRK12307        195 SKEWEE----AKLS-GKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVV  268 (426)
T ss_pred             ChHHHH----hhhh-ccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHH
Confidence            221100    0000 0000000011111235678888888765443322   2223334467789999988 69999999


Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc-CCchhHHHHHHHHHHHhh-hhcc
Q 016338          239 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY-AKSPAVAAVLITIALSLS-SFSQ  316 (391)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~  316 (391)
                      +...+...++..+++++.|++.||+++|         .....+.+...+....... ..+.........++.... ....
T Consensus       269 ~~~~~~~~~~~~~g~~~~g~l~dr~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (426)
T PRK12307        269 SNLMTAAAFGTVLGNIVWGLCADRIGLK---------KTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVG  339 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHh
Confidence            9998999999999999999999999864         3333444444333332222 222222222222222221 1122


Q ss_pred             cchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHH
Q 016338          317 AGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAF  366 (391)
Q Consensus       317 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~  366 (391)
                      +.......|..| ++|+++.|+.+...++++.++|.+.|++.|+.| +...
T Consensus       340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~  389 (426)
T PRK12307        340 GLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA  389 (426)
T ss_pred             HHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence            334455667777 789999999999999999999999999999988 5543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=2.2e-36  Score=279.29  Aligned_cols=356  Identities=15%  Similarity=0.156  Sum_probs=255.1

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++..|++++|+|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++  +++++.+++.|++
T Consensus        32 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l  109 (405)
T TIGR00891        32 ALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF--APGYITMFIARLV  109 (405)
T ss_pred             HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999998854  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC--chhHHHHHHHHHHHHHHHHhhcc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG--ISGPFILFSSLGLLWLSTWTSKV  159 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~~  159 (391)
                      .|++.+...+...+++.|++|+|+|+++.++.+.+..+|..+++.+++.+.+..+  ||+.|.+.++..++.. ......
T Consensus       110 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~  188 (405)
T TIGR00891       110 IGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNI  188 (405)
T ss_pred             HHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhC
Confidence            9999999999999999999999999999999999999999999999999988776  9999988665554443 334445


Q ss_pred             ccCCCCCCCCChhH--HHHHHcC-CCcccccCCC----ccHHHhhcCC--chHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 016338          160 TNDPCNSPFVSKSE--LRLIQAG-KSDSVKKRNP----PSLRHLLSKL--PSWTVIIANITNNWGYFVLLSWMPIYFNTV  230 (391)
Q Consensus       160 ~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (391)
                      ||+++.+++.++++  .+..++. .+++..+...    ...++..+++  .+...................+.|.|++++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (405)
T TIGR00891       189 PEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD  268 (405)
T ss_pred             CCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            66543221111100  0000000 0000000000    0111111111  122233333444455556678899999988


Q ss_pred             hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHH-HHHHhhcCCchhHHHHHHHHHH
Q 016338          231 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV-SLLCLNYAKSPAVAAVLITIAL  309 (391)
Q Consensus       231 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  309 (391)
                      +|+++.+.+.+.+...++..+++++.+++.||+++|         ..+..+...... ........++.+.......+..
T Consensus       269 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (405)
T TIGR00891       269 LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR---------KAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ  339 (405)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---------hhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            999999999999999999999999999999999865         222333333222 2222222333333333323333


Q ss_pred             Hhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHH
Q 016338          310 SLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTV  369 (391)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~  369 (391)
                      .......+.......|..| ++|++++|+.+...+++..++|.+.|.+.|+.|+|+..+..
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            3333334455566677766 89999999999999999999999999999998877766554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=6.4e-35  Score=266.92  Aligned_cols=361  Identities=15%  Similarity=0.154  Sum_probs=268.9

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      .|.+|.+.+|+|.|+++.+++.+.+.++..+++++.|+++||+|||+.+..+..+.+++..++++  +++++.+++.|++
T Consensus        11 ~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~l   88 (377)
T PRK11102         11 LPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL--AQTIDQLIYMRFL   88 (377)
T ss_pred             hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH--HccHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999854  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .|++.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++..+...+..||
T Consensus        89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (377)
T PRK11102         89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPE  168 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999888887776666666666


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHH
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  241 (391)
                      +++++++.+.+.             ++..+++++.+++|+++...+..++..........+.|.++.+.+|.++++.+..
T Consensus       169 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~  235 (377)
T PRK11102        169 TLPKERRQPFHL-------------RTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYY  235 (377)
T ss_pred             cCcccccCCCCh-------------HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHH
Confidence            543322111100             0011245678889988887777777777777778888888888889999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHh---hHHHHHHhhcCC-chhHHHHHHHHHHHhhhhccc
Q 016338          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG---PGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQA  317 (391)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  317 (391)
                      .....++..+++++.+++.||+++|         .....+...   ..+........+ +.+.............+....
T Consensus       236 ~~~~~~~~~~~~~~~g~l~~r~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (377)
T PRK11102        236 FALNIVFLFVMTIINSRFVRRVGAL---------NMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISS  306 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence            9999999999999999999999965         222333322   222222222212 222222222222233333334


Q ss_pred             chhhhhhhccccchhHHHHHHHHHHH-HHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCcc
Q 016338          318 GYLLNIQEIAPDCAGFLHGIANSAGT-LAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER  389 (391)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (391)
                      .......|..|++++++.++.+.... ++..+++.+.+. .+. + +...+...+++.+.+.+..++..|+++
T Consensus       307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (377)
T PRK11102        307 NAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLA-PFT-S-AWPMVWSMAFCSILSILFYLYASRPKK  376 (377)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhc-cCC-C-hHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            44455677778999999999887754 456666655432 222 2 334444555555566555565555544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=1.8e-35  Score=268.79  Aligned_cols=354  Identities=15%  Similarity=0.134  Sum_probs=270.2

Q ss_pred             ccchhhHHH-HhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhh---hccchHHHHH
Q 016338            2 SVAVVPLAA-KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA---ATHSTASLLA   77 (391)
Q Consensus         2 ~~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a---~~~~~~~~~~   77 (391)
                      +++.+.+.+ |+|+|.+|.+++.+++.+++.+.+++.|++.||+|+|+++.++.++.++..++.+++   ..++++.+++
T Consensus        54 ~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli  133 (462)
T PRK15034         54 SAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIV  133 (462)
T ss_pred             HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHH
Confidence            566777766 899999999999999999999999999999999999999999999999999988554   2379999999


Q ss_pred             HHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHH-----h-------------hcCchh
Q 016338           78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-----S-------------TIGISG  139 (391)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~-----~-------------~~gwr~  139 (391)
                      .|++.|++ +..++.....+++|+|+|+||+++|+.....++|..+++.+.+.+.     +             ..+||.
T Consensus       134 ~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~  212 (462)
T PRK15034        134 IALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLAN  212 (462)
T ss_pred             HHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHH
Confidence            99999998 6688999999999999999999999998777788877766665433     2             234788


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 016338          140 PFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVL  219 (391)
Q Consensus       140 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (391)
                      ...+..++.++..++.++..+|.++++.                     ..++.++.+|+|+.|..++.+++.+..+.++
T Consensus       213 ~~~~~~~~~iv~~i~~~~~~~~~~~~~~---------------------~~~~~~~vlk~~~~Wllslly~~tFG~fvg~  271 (462)
T PRK15034        213 AAWIWVPLLAIATIAAWSGMNDIASSRA---------------------SIADQLPVLQRLHLWLLSLLYLATFGSFIGF  271 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccccc---------------------CHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Confidence            8888888877777777766555442110                     1124578999999999999999999999999


Q ss_pred             HHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHH----HhhcC
Q 016338          220 LSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLL----CLNYA  295 (391)
Q Consensus       220 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  295 (391)
                      ..++|.|.++.+  +............+...+.++++|+++||+|++         .++..+.+.+.+...    .+...
T Consensus       272 s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~---------~vl~~~~i~~~i~~~~~~l~lp~~  340 (462)
T PRK15034        272 SAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGV---------RVTLINFIFMAIFSALLFLTLPGT  340 (462)
T ss_pred             HHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch---------HHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999998854  333333333445677889999999999999964         333333333333221    11111


Q ss_pred             --CchhHHHHHHHHHHHhhhhcccchhhhhhhcccc----------------------chhHHHHHHHHHHHHHHHHHHH
Q 016338          296 --KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD----------------------CAGFLHGIANSAGTLAAIISTI  351 (391)
Q Consensus       296 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~g~~~~~~~~g~~i~~~  351 (391)
                        .+.+.....++..+...+..+...+-.+.+.+|+                      +.|.+.|+....+.+|+++-|.
T Consensus       341 ~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~  420 (462)
T PRK15034        341 GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQ  420 (462)
T ss_pred             cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhH
Confidence              1223333333333444555666666566555553                      6789999999999999999999


Q ss_pred             HhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          352 GTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       352 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      +.|...+..|++...++...+.++++.++.+.+..|+
T Consensus       421 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~  457 (462)
T PRK15034        421 AFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRR  457 (462)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999988877654443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.5e-35  Score=284.66  Aligned_cols=370  Identities=13%  Similarity=0.126  Sum_probs=275.3

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      +.++|.+.++++++..+.+++.+++.++.+++++++|+++||+|||+.+++++++.+++.+++++  +++++.++++|++
T Consensus       187 s~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~af--a~s~~~llv~R~l  264 (742)
T TIGR01299       187 GFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF--VQGYGFFLFCRLL  264 (742)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999998854  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh-------------cCchhHHHHHHHHH
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-------------IGISGPFILFSSLG  148 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~-------------~gwr~~f~~~~~~~  148 (391)
                      .|++.+...+...+++.|++|+++|++.+++...+..+|.++++.++..+...             .+||+.+++.++..
T Consensus       265 ~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~  344 (742)
T TIGR01299       265 SGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPC  344 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888776543             35899888877665


Q ss_pred             HHHHHHHhhccccCCCCCCCCChhH--HH-----------------------HHHcCCCcc-----cccCC---------
Q 016338          149 LLWLSTWTSKVTNDPCNSPFVSKSE--LR-----------------------LIQAGKSDS-----VKKRN---------  189 (391)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------------------~~~~~~~~~-----~~~~~---------  189 (391)
                      ++. ++..+++||+|+......+.+  .+                       ..+.....+     +++..         
T Consensus       345 ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (742)
T TIGR01299       345 VFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVR  423 (742)
T ss_pred             HHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhh
Confidence            544 455667899886421110000  00                       000000000     00000         


Q ss_pred             --------CccHHHhhcCC---chHHHHHHHHHHHHHHHHHHHhhHHHHHhh----h-----------------CCCc--
Q 016338          190 --------PPSLRHLLSKL---PSWTVIIANITNNWGYFVLLSWMPIYFNTV----F-----------------NVNL--  235 (391)
Q Consensus       190 --------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----------------g~~~--  235 (391)
                              ..+++++++.+   +.+.+.+.+++..+.++++..|+|.++++.    +                 +++.  
T Consensus       424 ~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (742)
T TIGR01299       424 ALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLEN  503 (742)
T ss_pred             hhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhh
Confidence                    01234444432   346677788888999999999999876541    0                 0000  


Q ss_pred             --------------------------------------------------------------------------------
Q 016338          236 --------------------------------------------------------------------------------  235 (391)
Q Consensus       236 --------------------------------------------------------------------------------  235 (391)
                                                                                                      
T Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  583 (742)
T TIGR01299       504 QIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGC  583 (742)
T ss_pred             hhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCcc
Confidence                                                                                            


Q ss_pred             -----------chhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHH
Q 016338          236 -----------KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVL  304 (391)
Q Consensus       236 -----------~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (391)
                                 ........+..++.+++.++.|+++||+||         |.++..+.++.+++.+++...++....++.
T Consensus       584 ~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GR---------r~~l~~~~~lsai~~ll~~~~~s~~~ll~~  654 (742)
T TIGR01299       584 PIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGR---------LRMLAGSMVLSCISCFFLSFGNSESAMIAL  654 (742)
T ss_pred             CccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence                       001233455668889999999999999995         455667777777777766666555554444


Q ss_pred             HHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 016338          305 ITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      .++..++.....+....++.|..| +.|++++|+.+...++|++++|.+.+.+.+. + ...++.+.+++.+++.++...
T Consensus       655 ~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~-~~~pf~i~a~~lll~~ll~~~  732 (742)
T TIGR01299       655 LCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-T-KAAPILFASAALACGGLLALK  732 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHHHHHh
Confidence            444444445556677888899888 8999999999999999999999999998875 3 566777777777777776665


Q ss_pred             hc
Q 016338          384 YS  385 (391)
Q Consensus       384 ~~  385 (391)
                      ++
T Consensus       733 LP  734 (742)
T TIGR01299       733 LP  734 (742)
T ss_pred             CC
Confidence            54

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=1.6e-34  Score=266.12  Aligned_cols=350  Identities=13%  Similarity=0.066  Sum_probs=257.1

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      .|.+|.+.+++|.|.++.++..+++.+++.+++++.|+++||+|||+++..+.+++.++.+++++  ++|++.++++|++
T Consensus        36 ~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--a~~~~~l~~~r~l  113 (413)
T PRK15403         36 QPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF--TTSMTQFLIARFI  113 (413)
T ss_pred             ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999854  5999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      +|++.+...+....++.|++|+++|++++++......+|..+||.+++.+.++.|||+.|++.++..++..+..++..||
T Consensus       114 ~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~  193 (413)
T PRK15403        114 QGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPE  193 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99998877777788899999999999999999999999999999999999998999999999998888776665556676


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHH
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  241 (391)
                      +++++++. .+.             ++..+++++++|||+++...+...+.......+..+.|.++++.+|.++.+.++.
T Consensus       194 ~~~~~~~~-~~~-------------~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~  259 (413)
T PRK15403        194 TVKRGAVP-FSA-------------KSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWT  259 (413)
T ss_pred             CccccCCC-CCh-------------HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHH
Confidence            54322111 000             0012356788999999998888888888888888899999999889999999998


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhh
Q 016338          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLL  321 (391)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (391)
                      ......+..++..+.+++.+|..+++...  ........+..........  ..++.........+.....+...+....
T Consensus       260 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~--~~~~~~~ig~~l~~~~~~~--~~~~~~~~~~~~~l~~~G~~~~~p~~~~  335 (413)
T PRK15403        260 QVPVFGAVIVANAIVARFVKDPTEPRFIW--RAVPIQLVGLALLIVGNLL--WPHVWLWSVLGTSLYAFGIGLIFPTLFR  335 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCchhHHH--HHHHHHHHHHHHHHHHHHH--ccccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            87777777777777777654433221000  0001112222222111111  1222222222323233333333343333


Q ss_pred             hhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHH
Q 016338          322 NIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGL  373 (391)
Q Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~  373 (391)
                      ......+..+|++.++.+.....+...++...+++.++ + ....+....++
T Consensus       336 ~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~  385 (413)
T PRK15403        336 FTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-G-GRLPFHLLAVV  385 (413)
T ss_pred             HHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-CchHHHHHHHH
Confidence            22222234589999999999999999999999998887 3 34444444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=1.8e-36  Score=274.57  Aligned_cols=332  Identities=27%  Similarity=0.402  Sum_probs=257.2

Q ss_pred             ccchh-hHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHH
Q 016338            2 SVAVV-PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (391)
Q Consensus         2 ~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~   80 (391)
                      .+.+| .+.+|+|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..++  +|.+.+++.|+
T Consensus        16 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   93 (352)
T PF07690_consen   16 SPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--SNFWLLLIARF   93 (352)
T ss_dssp             HHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--hhHHHHhhhcc
Confidence            35677 7899999999999999999999999999999999999999999999999999996666433  77789999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      +.|++.+...+...+++.|++|+|+|++++++.+...++|..++|.+++.+.+..+||+.|++.+++.++..++...+.+
T Consensus        94 l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~  173 (352)
T PF07690_consen   94 LLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLP  173 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred             ccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhh
Confidence            99999999999999999999999999999999999999999999999999998999999999999999888775445555


Q ss_pred             cCCCCCCCCChhHHHHHHcCCCcccccCCCc-cHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCC-cchh
Q 016338          161 NDPCNSPFVSKSELRLIQAGKSDSVKKRNPP-SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN-LKQA  238 (391)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~  238 (391)
                      +++++++..++++++        ++++++.. .++++.++|.+|......+...........+.|.|+++.+|.+ ..+.
T Consensus       174 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  245 (352)
T PF07690_consen  174 EPPPPRERESPKESE--------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQA  245 (352)
T ss_dssp             --STTTT--SSTTTT----------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHH
T ss_pred             hcccccccccccccc--------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHH
Confidence            544443332222210        00111222 3677888888886666666666788889999999988889999 7899


Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH-HHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhccc
Q 016338          239 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ-SIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQA  317 (391)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (391)
                      +.......+...+++++.+++.||++++       +.... ..........+......++.........+.+...+...+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  318 (352)
T PF07690_consen  246 GLLFSIFGIVGIIGSLLAGRLSDRFGRR-------RRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFP  318 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999865       33322 222222222222222223334444444444445666677


Q ss_pred             chhhhhhhccc-cchhHHHHHHHHHHHHHHHHHH
Q 016338          318 GYLLNIQEIAP-DCAGFLHGIANSAGTLAAIIST  350 (391)
Q Consensus       318 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~  350 (391)
                      .......+..| ++++++.|+.+...++++.++|
T Consensus       319 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  319 ILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            78888888777 8999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=1.9e-35  Score=279.46  Aligned_cols=347  Identities=15%  Similarity=0.122  Sum_probs=269.8

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++.+|.+.+|+|.|.++.+++.+.+.++..++.++.|+++||+|||+.+.++..+..++.+++++  ++|++.+++.|++
T Consensus        22 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~   99 (485)
T TIGR00711        22 NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV--APNLELMIIFRVI   99 (485)
T ss_pred             HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC--cCCHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999954  5999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      +|++.+...+...+++.|++|+|+|++++++......+|..++|.+++++.++.+||+.|++.+.+.++..+...+..||
T Consensus       100 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  179 (485)
T TIGR00711       100 QGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPR  179 (485)
T ss_pred             HHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999888887766666666666


Q ss_pred             CCCCCCCCChhHH------------HHHHcCCCcc-------------------------cccCCCccHHHhhcCCchHH
Q 016338          162 DPCNSPFVSKSEL------------RLIQAGKSDS-------------------------VKKRNPPSLRHLLSKLPSWT  204 (391)
Q Consensus       162 ~~~~~~~~~~~~~------------~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~  204 (391)
                      +++++++..+...            ...++..+++                         .+++++....+.+|+|+++.
T Consensus       180 ~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (485)
T TIGR00711       180 DKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTI  259 (485)
T ss_pred             ccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHH
Confidence            4433221111000            0000000000                         00111112246789999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHh
Q 016338          205 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG  284 (391)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  284 (391)
                      ..+..++.....+....+.|.|+++.+|+++.+++.......++..++.++.|++.||+++|         .....+...
T Consensus       260 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~~~~g~~~  330 (485)
T TIGR00711       260 GCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR---------KLVTIGLIL  330 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH---------HHHHHHHHH
Confidence            88888888888888999999999998999999999999999999999999999999999854         344555555


Q ss_pred             hHHHHHHhh--cCC--chhHHHHHHHHHHHhhhhcc-cchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 016338          285 PGVSLLCLN--YAK--SPAVAAVLITIALSLSSFSQ-AGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW  359 (391)
Q Consensus       285 ~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~  359 (391)
                      ..++...+.  ..+  +.+.......+.+...+... +.......+.++++++++.|+.+..+.+|+.+++.+.+.+.++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       331 YAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555444  112  22223333333333333333 3333334445558999999999999999999999999998874

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=1e-34  Score=267.42  Aligned_cols=351  Identities=18%  Similarity=0.135  Sum_probs=255.8

Q ss_pred             cchhh-HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhh-hc-----cchHHH
Q 016338            3 VAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA-AT-----HSTASL   75 (391)
Q Consensus         3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a-~~-----~~~~~~   75 (391)
                      +.+|. +.+++|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+.+.+. ..     .+++.+
T Consensus        36 ~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (399)
T PRK05122         36 AVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLL  115 (399)
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHH
Confidence            45665 678999999999999999999999999999999999999999999999888776665332 11     256788


Q ss_pred             HHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Q 016338           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTW  155 (391)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  155 (391)
                      ++.|+++|++.+...+...+++.|+.|+|+|++++++.+....+|..+|+.+++.+.+..|||..+.+.++..++..+..
T Consensus       116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~  195 (399)
T PRK05122        116 LLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA  195 (399)
T ss_pred             HHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999888766655433322


Q ss_pred             hhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCc
Q 016338          156 TSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL  235 (391)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  235 (391)
                       ...|+++++   + + +                +.+.++.+|  +.+.......+....+.....+.|.|+++ .|.  
T Consensus       196 -~~~~~~~~~---~-~-~----------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--  248 (399)
T PRK05122        196 -RPRPAVPPV---K-G-E----------------RLPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA-RGW--  248 (399)
T ss_pred             -hcCCCCCCC---C-c-c----------------chhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--
Confidence             212221111   0 0 0                012233333  22222333334445566677888888876 465  


Q ss_pred             chhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhc
Q 016338          236 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFS  315 (391)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (391)
                      .+.+.......++.+++++..+++.||+++|         ..+..+.....+........++.+......++.+...+..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  319 (399)
T PRK05122        249 DGAALALTLFGVAFVGARLLFGNLINRLGGL---------RVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLV  319 (399)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHH
Confidence            3456666777888899999999999999854         3344444555555555444455444443333333333333


Q ss_pred             ccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCccc
Q 016338          316 QAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERV  390 (391)
Q Consensus       316 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (391)
                      .+.......+..| ++|+++.|+.+...++|..++|.+.|.+.|+.| ++..+.+.+++.+++.+.....+++++|
T Consensus       320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (399)
T PRK05122        320 FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYRRAPR  394 (399)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            4444444445444 899999999999999999999999999999988 9999999888888888777766555543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=2e-34  Score=263.61  Aligned_cols=347  Identities=13%  Similarity=0.088  Sum_probs=256.7

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++.+|.+.+|+|.|.+++|++.+.+.+++.+++++.|+++||+|||+.+..+..+.+++..++++  ++|++.+++.|++
T Consensus        26 ~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l  103 (381)
T PRK03633         26 NTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL--MVGFWSWLAWRFV  103 (381)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999998854  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      +|++.+...+...+.+.|..++++|+++++..+...++|..+|+.+++.+.+...|+..+.. +..........+.  +.
T Consensus       104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~--~~  180 (381)
T PRK03633        104 AGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVT-GLVLAAILPLLFT--RI  180 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHH-HHHHHHHHHHHHh--cc
Confidence            99999998888888888999999999999999999999999999999998775444333332 2222211111111  11


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHH
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  241 (391)
                      +++++++                   ++..+.++.+|+|.++......+.....+.....++|.|+++ .|.++.+.+..
T Consensus       181 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~  240 (381)
T PRK03633        181 LNQQAEN-------------------HDSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFW  240 (381)
T ss_pred             cCCCCCC-------------------CCCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH
Confidence            1111000                   011245677888888866555555555666677889999987 69999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhh
Q 016338          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLL  321 (391)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (391)
                      .+...++.+++++..|++.||+++|         ..+..+.....++.....  ..........+++.. .....+....
T Consensus       241 ~~~~~~~~~~~~~~~g~l~dr~~~~---------~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~-~~~~~p~~~~  308 (381)
T PRK03633        241 MALLVSAGILGQWPIGRLADRFGRL---------LVLRVQVFVVILGSIAML--SQAAMAPALFILGAA-GFTLYPVAMA  308 (381)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHcCcH---------HHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHH-HHhHHHHHHH
Confidence            8888999999999999999999864         333334444444333322  112222222222222 2233455555


Q ss_pred             hhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          322 NIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       322 ~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      ...|..| ++++...+..+...++|..++|.+.|.+.|+.| +...|.+.+.+.++..+..+..+|
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~  373 (381)
T PRK03633        309 WACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLRKAG  373 (381)
T ss_pred             HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHhccC
Confidence            5556555 677888888888899999999999999999988 888888888887777665554433

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=2e-34  Score=267.78  Aligned_cols=358  Identities=15%  Similarity=0.120  Sum_probs=250.2

Q ss_pred             HHHHh--CCChhhHHHHH-----HHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchH-------
Q 016338            8 LAAKF--GWSSSFLGIVQ-----SSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTA-------   73 (391)
Q Consensus         8 i~~~~--~~s~~~~g~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~-------   73 (391)
                      +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+++..+..++++++++++++  +|++       
T Consensus        49 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  125 (438)
T PRK09952         49 FNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLL--PSFSTIGWWAP  125 (438)
T ss_pred             HHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHH
Confidence            45555  66666 45554     34556778999999999999999999999999999999999554  8876       


Q ss_pred             -HHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh--------hcCchhHHHHH
Q 016338           74 -SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS--------TIGISGPFILF  144 (391)
Q Consensus        74 -~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~--------~~gwr~~f~~~  144 (391)
                       .+++.|+++|++.|..++....++.|++|+|+|++..+..+.+..+|..++..+...+..        .+|||.+|++.
T Consensus       126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~  205 (438)
T PRK09952        126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFS  205 (438)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHH
Confidence             588899999999999999999999999999999999999999999999998877766542        57999999988


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHH-HHHHHHHHHHHHHHhh
Q 016338          145 SSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVII-ANITNNWGYFVLLSWM  223 (391)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  223 (391)
                      +++.++. +......||+|+..+.     ++   +. +  +++++....+.++|+|+.+.... ..++.....+....|.
T Consensus       206 ~~~~l~~-~~l~~~~~es~~~~~~-----~~---~~-~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (438)
T PRK09952        206 IVLVLIA-LWVRNGMEESAEFEQQ-----QH---EQ-A--AAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFA  273 (438)
T ss_pred             HHHHHHH-HHHHHhCCCChhHHHH-----Hh---hc-c--cccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7765443 2223334444421100     00   00 0  00111112334667777766544 4455566777788999


Q ss_pred             HHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHH--hh-cCCc-hh
Q 016338          224 PIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLC--LN-YAKS-PA  299 (391)
Q Consensus       224 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~-~~  299 (391)
                      |.|+++.+|++...........++...++.++.|+++||++||       +  ....+.+...+....  .. ...+ ..
T Consensus       274 ~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (438)
T PRK09952        274 LNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR-------R--VYITGALIGTLSAFPFFMALEAQSIFW  344 (438)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-------H--HHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence            9999888898887655555566777888889999999999975       2  222333322222211  11 1222 22


Q ss_pred             HHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHH-HHHHHHHHHhhHhhccc-cchhHHHHHHHHHHHH
Q 016338          300 VAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGT-LAAIISTIGTGYFVQWL-GSFQAFLTVTAGLYFV  376 (391)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~g~~i~~~~~g~l~~~~-g~~~~~~~~~~~~~~~  376 (391)
                      ......++.....+...+....+..|..| +.|+++.|+.+.... +++.++|.+.+++.|.. |+|...+....++.++
T Consensus       345 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i  424 (438)
T PRK09952        345 IVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLI  424 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            22223333333344445556778888888 899999999766654 79999999999999865 3477888888888888


Q ss_pred             HHHHHHHhccCcc
Q 016338          377 TTIFWNLYSTGER  389 (391)
Q Consensus       377 ~~~~~~~~~~~~~  389 (391)
                      +.+..+..++++|
T Consensus       425 ~~v~~~~~~~~~~  437 (438)
T PRK09952        425 SAMTALLMKDNQR  437 (438)
T ss_pred             HHHHHHHcccccc
Confidence            8777776655444

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=3.2e-34  Score=269.82  Aligned_cols=348  Identities=13%  Similarity=0.103  Sum_probs=264.3

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++.+|.+.+|+|.|+.+.+++.+.+.++..++.++.|+++||+|||+++..+..+.+++.+++++  +++++.+++.|++
T Consensus        30 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l  107 (471)
T PRK10504         30 NTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL--SGTLNELLLARVL  107 (471)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999998888744  5899999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      +|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+.++.|||+.|.+......+..+......|+
T Consensus       108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        108 QGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999887777666666555555


Q ss_pred             CCCCCCCCChhHHHH-----------HHcCCC-------------------------cccccCCCccHHHhhcCCchHHH
Q 016338          162 DPCNSPFVSKSELRL-----------IQAGKS-------------------------DSVKKRNPPSLRHLLSKLPSWTV  205 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~-----------~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~  205 (391)
                      .+.++++.+......           .++.+.                         +.+.+++..+ .+++|||+++..
T Consensus       188 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~  266 (471)
T PRK10504        188 YTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRTRTFSLG  266 (471)
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcccchHHH
Confidence            443322211110000           000000                         0011111222 358899999998


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhh
Q 016338          206 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP  285 (391)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  285 (391)
                      ....++..........+.|.|+++.+|.++.++++......++..++.++.+++.||+++|         ..+..+....
T Consensus       267 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~---------~~~~~~~~~~  337 (471)
T PRK10504        267 LAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR---------RVLVATTLGL  337 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch---------HHHHHHHHHH
Confidence            8888888888777778899999987899999999999888888888889999999999854         3334444444


Q ss_pred             HHHHHHhhcC--Cc-hhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          286 GVSLLCLNYA--KS-PAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       286 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      .+....+...  .+ .+.......+.+...+...+.......+..| ++++.++|+.+....+|..+++.+.|.+.+..|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        338 ALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4433333222  12 2222222222223333334444455555555 899999999999999999999999999988776

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=2.5e-34  Score=266.19  Aligned_cols=356  Identities=13%  Similarity=0.092  Sum_probs=264.4

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhh-hhccchHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AATHSTASLLAVRA   80 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~r~   80 (391)
                      ++..|++++++|+|+++.|+..+.+.+++.+++++.|+++||+|||+++..+..+++++.+++.. +.+++++.+++.|+
T Consensus        46 ~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~  125 (438)
T PRK10133         46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF  125 (438)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999987531 34689999999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh------------------h--------
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS------------------T--------  134 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~------------------~--------  134 (391)
                      ++|+|.+...+..+.++.|+.|+++|++.++..+....+|..+++.+++.+..                  .        
T Consensus       126 l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~  205 (438)
T PRK10133        126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLV  205 (438)
T ss_pred             HHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHH
Confidence            99999999999999999998877777778999999999999999999876541                  0        


Q ss_pred             cCchhHHHHHH-HHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHH
Q 016338          135 IGISGPFILFS-SLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNN  213 (391)
Q Consensus       135 ~gwr~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (391)
                      .+||++|+... +..++..+......||.+++++.   +           +++++..++.++++|+|.++...+..++..
T Consensus       206 ~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~---~-----------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~  271 (438)
T PRK10133        206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS---D-----------AKQGSFSASLSRLARIRHWRWAVLAQFCYV  271 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc---c-----------ccccchhhhHHHHHhCchHHHHHHHHHHHH
Confidence            25666776433 33333333323333332211100   0           001111234578899999988877778888


Q ss_pred             HHHHHHHHhhHHHH-HhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHh
Q 016338          214 WGYFVLLSWMPIYF-NTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  292 (391)
Q Consensus       214 ~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      ..+.....|.+.|+ ++.+|+++.+++.......++..++++..+++.||+++|         ..+..+..+....+...
T Consensus       272 ~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~---------~~l~~~~~~~~~~~~~~  342 (438)
T PRK10133        272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH---------KVLAAYALIAMALCLIS  342 (438)
T ss_pred             HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH---------HHHHHHHHHHHHHHHHH
Confidence            88888888999885 566899999999999999999999999999999999964         23333333333333333


Q ss_pred             hcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHH
Q 016338          293 NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAG  372 (391)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~  372 (391)
                      ...++.. ....+.+.+...+...|..++...+..|++.+++.++.. ....|+.++|++.|.+.|..|+.+..|++...
T Consensus       343 ~~~~~~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~  420 (438)
T PRK10133        343 AFAGGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL  420 (438)
T ss_pred             HHcCChH-HHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            3333322 233444455556667777787777777877888888886 45578999999999999988645677766555


Q ss_pred             HHHHHHHHHH
Q 016338          373 LYFVTTIFWN  382 (391)
Q Consensus       373 ~~~~~~~~~~  382 (391)
                      +.+.......
T Consensus       421 ~~~~~~~~~~  430 (438)
T PRK10133        421 CFAVIFIFAR  430 (438)
T ss_pred             HHHHHHHHHH
Confidence            5555544433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=2.2e-34  Score=264.30  Aligned_cols=351  Identities=15%  Similarity=0.131  Sum_probs=262.1

Q ss_pred             hHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhh
Q 016338            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAE   86 (391)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~   86 (391)
                      .+++++|+|+.++|++.+...+...+.+++.|+++||+|||+++..+..+..++.+++++  +++++.+++.|+++|++.
T Consensus        36 ~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~g~~~  113 (400)
T PRK11646         36 RFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI--AHEPWLLWLSCILSGLGG  113 (400)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999998854  489999999999999999


Q ss_pred             hchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCCCCC
Q 016338           87 GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS  166 (391)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~  166 (391)
                      +...+...+++.|++|+|+|++++++.+...++|..+||.+++.+. .+|||+.|++.++..++..+......||.++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~  192 (400)
T PRK11646        114 TLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLST  192 (400)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence            8888999999999999999999999999999999999999999998 689999999988877766555455555422110


Q ss_pred             CCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHH
Q 016338          167 PFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPW  246 (391)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  246 (391)
                      .   ++               +...++++.+++|+++...+..+...........+.|.|+++.. .++.+.+.+.+...
T Consensus       193 ~---~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~g~l~~~~~  253 (400)
T PRK11646        193 V---RT---------------PVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIA-GSPSAVKWMYAIEA  253 (400)
T ss_pred             c---ch---------------hhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhc-CCchHHHHHHHHHH
Confidence            0   00               01124677889998887666655555444455678899998854 47778888877777


Q ss_pred             HHHHHHHHHHHHHHHH-HHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhh
Q 016338          247 GTMAVSGYMAGKASDS-LIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQE  325 (391)
Q Consensus       247 ~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (391)
                      +....+....+++.|| .+.+       +  .+..+....++....+...++.+.......+.........+.......+
T Consensus       254 ~~~~~~~~~~~~~~~~r~~~~-------~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~  324 (400)
T PRK11646        254 CLSLTLLYPIARWSEKRFRLE-------H--RLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSAS  324 (400)
T ss_pred             HHHHHHHHHHHHHHHHhcchh-------H--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHh
Confidence            7666666555666654 3322       2  2334444555555555444544443333333333334455666677777


Q ss_pred             ccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccc---hhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          326 IAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS---FQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       326 ~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      ..| ++||+++|+.+....+|..++|.+.|.+.|+.++   ....+...+...+++.+......|++
T Consensus       325 ~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (400)
T PRK11646        325 LADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYWQFSQK  391 (400)
T ss_pred             cCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            666 8999999999999999999999999999998542   45666666666666665555444443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=1.7e-34  Score=272.44  Aligned_cols=373  Identities=17%  Similarity=0.193  Sum_probs=250.2

Q ss_pred             ccchhhHHHHh--------CCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhh-----
Q 016338            2 SVAVVPLAAKF--------GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA-----   68 (391)
Q Consensus         2 ~~~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~-----   68 (391)
                      ++..|.+++++        +.++++.+++.+++.++..++++++|+++||+|||+++.++..+..++.++++++.     
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~  111 (479)
T PRK10077         32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTS  111 (479)
T ss_pred             hHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            45567777777        88999999999999999999999999999999999999999999998888775420     


Q ss_pred             -----ccchHHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHH--------hhc
Q 016338           69 -----THSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STI  135 (391)
Q Consensus        69 -----~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~--------~~~  135 (391)
                           .++++.+++.|+++|++.|...+...++++|++|+|+|++++++.+.+..+|..+++.++..+.        +..
T Consensus       112 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  191 (479)
T PRK10077        112 IGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD  191 (479)
T ss_pred             ccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence                 1235678899999999999999999999999999999999999999999999999988776553        356


Q ss_pred             CchhHHHHHHHHHHHHHHHHhhccccCCCCCCCCC-hhHH-HHHHcCCCcccccCCCccHHHhhc-----CCchHH----
Q 016338          136 GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS-KSEL-RLIQAGKSDSVKKRNPPSLRHLLS-----KLPSWT----  204 (391)
Q Consensus       136 gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----  204 (391)
                      |||+.|++.++..++..+. .++.||+|++...++ +++. +..++....++.++...+.++.++     .+..+.    
T Consensus       192 gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (479)
T PRK10077        192 GWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVG  270 (479)
T ss_pred             ChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHH
Confidence            9999999988877776544 456788775321111 1111 111110000000000011111111     111110    


Q ss_pred             -H----HHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 016338          205 -V----IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  279 (391)
Q Consensus       205 -~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  279 (391)
                       .    ....+...........+.|.+.++ .|.+...........++...++.++.+++.||+++|         ..+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r---------~~~i  340 (479)
T PRK10077        271 VIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK---------PLQI  340 (479)
T ss_pred             HHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---------HHHH
Confidence             0    011111122233444566777666 788887777777778888999999999999999954         4445


Q ss_pred             HHhHhhHHHHHHhhc---CCchh-HHHH-HHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHh
Q 016338          280 IGFIGPGVSLLCLNY---AKSPA-VAAV-LITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT  353 (391)
Q Consensus       280 ~~~~~~~~~~~~~~~---~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~  353 (391)
                      .+..+..++...+..   .+... .... ......+......+.......|..| ++|+++.|+.+...+++..+++.+.
T Consensus       341 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~  420 (479)
T PRK10077        341 IGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTF  420 (479)
T ss_pred             HhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555554444321   12221 1111 2222222222234566788888877 8999999999999999999998777


Q ss_pred             hHhh------ccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          354 GYFV------QWLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       354 g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      +.+.      |..+ +...+.+.++..+++.++.+.+.+
T Consensus       421 p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        421 PMMDKNSWLVAHFH-NGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             HHHHhccchhhhcc-CccHHHHHHHHHHHHHHHHHhccc
Confidence            6554      4566 566677777666666665554443

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=7.2e-34  Score=261.96  Aligned_cols=335  Identities=15%  Similarity=0.138  Sum_probs=256.4

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      .|.+|++++|+|.|+++.++..+++.++..++++++|+++||+|||+.+..+..+..++.+++.  .+++++.+++.|++
T Consensus        26 ~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l  103 (401)
T PRK11043         26 LPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML--WVESAAQLLVLRFV  103 (401)
T ss_pred             HhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHH
Confidence            3667889999999999999999999999999999999999999999999999999999988884  45999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      +|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+..|||+.|++.++..++..+..+...|+
T Consensus       104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        104 QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99998888888889999999999999999999999999999999999999999999999999888887766655544333


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHH
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  241 (391)
                      ++++ ++  ++                ++.++++.+|+|+++...+........+.....+.|.++++ .|+++.+.+..
T Consensus       184 ~~~~-~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~  243 (401)
T PRK11043        184 KKAR-KQ--SQ----------------DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLS  243 (401)
T ss_pred             CCcc-cc--ch----------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHH
Confidence            2211 10  00                11256788889988876666666666677778889998877 79999999988


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHhHhhHHHHHHhh--cCCchhHHHHHHHHHHHhhhhcccc
Q 016338          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKI-MQSIGFIGPGVSLLCLN--YAKSPAVAAVLITIALSLSSFSQAG  318 (391)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  318 (391)
                      .....++..++++..+++.||+++|       +.. .................  ..++.........+.....+...+.
T Consensus       244 ~~~~~~~~~~g~~~~~~l~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (401)
T PRK11043        244 YVPQTIAFLVGGYGCRAALQKWGGE-------QLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPI  316 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHH-------HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence            8887888899999999999999865       211 11112222222222221  1223333333333333444444555


Q ss_pred             hhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHH
Q 016338          319 YLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAF  366 (391)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~  366 (391)
                      ......+..|++++++.|+.+.....++..++.+.|.+.|... ....
T Consensus       317 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~-~~~~  363 (401)
T PRK11043        317 VVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALISTPL-LTTG  363 (401)
T ss_pred             HHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh-hHHH
Confidence            5555556668889999999999999999999999999988643 4443

>TIGR00896 CynX cyanate transporter

Probab=100.00  E-value=2.3e-34  Score=260.89  Aligned_cols=331  Identities=16%  Similarity=0.140  Sum_probs=251.1

Q ss_pred             CccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHH
Q 016338            1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (391)
Q Consensus         1 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~   80 (391)
                      +++.+|.+++|+|.|+++.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .  +++.+.+++.|+
T Consensus        19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~   95 (355)
T TIGR00896        19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S--APGTALLFAGTA   95 (355)
T ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H--hccHHHHHHHHH
Confidence            3688999999999999999999999999999999999999999999999999998888877765 3  388899999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc--CchhHHHHHHHHHHHHHHHHhhc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI--GISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      +.|++.+...+.....+.|++| ++|++++++.+...++|..+++.+++.+.+..  +||+.|...++..++....   .
T Consensus        96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~---~  171 (355)
T TIGR00896        96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLA---W  171 (355)
T ss_pred             HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---H
Confidence            9999999888888889999996 78999999999999999999999998887765  3999988877655443222   2


Q ss_pred             cccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchh
Q 016338          159 VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQA  238 (391)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  238 (391)
                      .|+.++++++++                +......++.+|+|.++...+..++....+.....++|.|+++ .|.++.+.
T Consensus       172 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~  234 (355)
T TIGR00896       172 IPQVRRRVAANQ----------------TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATA  234 (355)
T ss_pred             hhhhccccCCCC----------------CCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHH
Confidence            233322111000                0011234567889998887777777778888888999999987 69999999


Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccc
Q 016338          239 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG  318 (391)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (391)
                      +...+...++.+++++..|++.||+++|       | ..+..+.....++.......++........+.+ ...+...+.
T Consensus       235 g~~~~~~~~~~i~~~~~~g~l~dr~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-~~~g~~~~~  305 (355)
T TIGR00896       235 GSLLALMQLAQAASALLIPALARRVKDQ-------R-GIVAVLAVLQLVGLCGLLFAPMHGLWAWALVLG-LGQGGAFPL  305 (355)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhccc-------h-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HhhhhHhHH
Confidence            9999999999999999999999999653       2 333344444444444333333222222222333 333333344


Q ss_pred             hhhhhh-hccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchh
Q 016338          319 YLLNIQ-EIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQ  364 (391)
Q Consensus       319 ~~~~~~-~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~  364 (391)
                      ...... +..+ ++++...++.+..++++..++|.+.|.+.|+.|+|.
T Consensus       306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       306 ALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            333333 3443 677999999999999999999999999999988664

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=5.1e-34  Score=262.15  Aligned_cols=347  Identities=16%  Similarity=0.155  Sum_probs=248.2

Q ss_pred             cchhh-HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhh---hh---hccchHHH
Q 016338            3 VAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP---WA---ATHSTASL   75 (391)
Q Consensus         3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~a---~~~~~~~~   75 (391)
                      |.+|. +.+|+|.|++++|++.+.+.+++.+++++.|+++||+||||++..+.+...++.+...   ..   ..++++.+
T Consensus        36 p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (392)
T PRK12382         36 PVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALL  115 (392)
T ss_pred             hhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHH
Confidence            45664 6789999999999999999999999999999999999999999999887776654321   11   13578999


Q ss_pred             HHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Q 016338           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTW  155 (391)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  155 (391)
                      ++.|+++|++.+...+...+++.|++|+|+|++++++.+.+.+.|..++|++++.+.+..|||..+.+..+..++.... 
T Consensus       116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-  194 (392)
T PRK12382        116 VVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF-  194 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH-
Confidence            9999999999998888899999999999999999999999999999999999999999999998877655544333222 


Q ss_pred             hhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCc
Q 016338          156 TSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL  235 (391)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  235 (391)
                      ....||.+++++   +                  +.+.++..|  .++...+...+..........+.|.|+++ .|.+ 
T Consensus       195 ~~~~~~~~~~~~---~------------------~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~-  249 (392)
T PRK12382        195 NGTVRKVPAHAG---E------------------RPSLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS-KGWA-  249 (392)
T ss_pred             HHhccCCCCCcc---c------------------CchHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCc-
Confidence            111222111100   0                  001122221  12222222333344555667888888877 4655 


Q ss_pred             chhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhc
Q 016338          236 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFS  315 (391)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (391)
                       +.+.......++..++++..|++.||+++|+         .+..+.....+........++.+.......+.+...+..
T Consensus       250 -~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  319 (392)
T PRK12382        250 -MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVK---------VAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLI  319 (392)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCe---------ehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhH
Confidence             3455566677788899999999999999652         223344444444444444444444443333333333334


Q ss_pred             ccchhhhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          316 QAGYLLNIQEIA-PDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       316 ~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      .+.......+.. |++|+++.|+.+...++|..++|.+.|.+.|+.| ++..+.+.+.+.+++.+..+...|
T Consensus       320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  390 (392)
T PRK12382        320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTILSFR  390 (392)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHhhcc
Confidence            444445545544 4899999999999999999999999999999988 999999999888888877765544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=2.6e-34  Score=266.16  Aligned_cols=357  Identities=14%  Similarity=0.099  Sum_probs=267.2

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhh---hhccchHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW---AATHSTASLLAV   78 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---a~~~~~~~~~~~   78 (391)
                      .+.+|.+.+|++.|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+..+.   ..+++++.+++.
T Consensus        37 ~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  116 (417)
T PRK10489         37 GVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLL  116 (417)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            35678888999999999999999999999999999999999999999999988887777665432   224788999999


Q ss_pred             HHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhc
Q 016338           79 RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus        79 r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      |+++|++.+...+...+++.|+.|+++|+++.++.+...++|..+||.+++.+.+..+||+.|.+.++..++..+... .
T Consensus       117 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~  195 (417)
T PRK10489        117 GLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL-R  195 (417)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-h
Confidence            999999998888889999999999999999999999999999999999999999989999999988777666555443 4


Q ss_pred             cccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchh
Q 016338          159 VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQA  238 (391)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  238 (391)
                      .||+++++++.++ +.            ++..+.++..+++|.++...+..++... ......+.|.|.++.+|.++.+.
T Consensus       196 l~~~~~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~  261 (417)
T PRK10489        196 LPALPPPPQPREH-PL------------RSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQI  261 (417)
T ss_pred             CCCCCCCCccccc-ch------------HHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHh
Confidence            4554332211100 00            0011235667788877665555444332 45677889999999889999999


Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccc
Q 016338          239 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG  318 (391)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (391)
                      +.+.+...++..++.++.+++.||.++         +..+..+.....+....+...++........++.+...+...+.
T Consensus       262 g~~~~~~~~g~~ig~~~~~~l~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  332 (417)
T PRK10489        262 GLLYAAVPLGAALGALTSGWLAHSARP---------GLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLL  332 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCc---------chHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998543         23344455555555555555555444333333333334444455


Q ss_pred             hhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHH-HHHHHHH
Q 016338          319 YLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFV-TTIFWNL  383 (391)
Q Consensus       319 ~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~  383 (391)
                      .....++..| +.|++++|+.+...++|..++|.+.|.+.|..| +...+...+.+..+ +.+....
T Consensus       333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        333 QYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHh
Confidence            5667777777 789999999999999999999999999999988 55555555544444 4444443

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=2.1e-34  Score=273.49  Aligned_cols=362  Identities=16%  Similarity=0.125  Sum_probs=263.0

Q ss_pred             cchhhHHHHhCCC---hhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHH
Q 016338            3 VAVVPLAAKFGWS---SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVR   79 (391)
Q Consensus         3 ~~~~~i~~~~~~s---~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r   79 (391)
                      +..|.+.+|+|++   +.+.++..+++.++..+++++.|+++||+|||+++.++.++..++.++.+  +++|++.+++.|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA--FSPNYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH--HcccHHHHHHHH
Confidence            5678899999999   89999999999999999999999999999999999999999999999884  459999999999


Q ss_pred             HHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcc
Q 016338           80 AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKV  159 (391)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  159 (391)
                      ++.|++.+...+....++.|++|+++|+++.++.+.+..+|.++++.++..+.+   ||+.+++.+++.++..+.. ++.
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence            999999999999999999999999999999999999999999999988876654   9999999998877766655 567


Q ss_pred             ccCCCCCCCCC--hhHHHHH----H-cC------------CCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHH
Q 016338          160 TNDPCNSPFVS--KSELRLI----Q-AG------------KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL  220 (391)
Q Consensus       160 ~~~~~~~~~~~--~~~~~~~----~-~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (391)
                      ||+|+....+.  ++..+..    + ++            .++.++++++.+.++++|+|+++...+......+......
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            88775321111  1100000    0 00            0000111223477889999988877666655544443333


Q ss_pred             HhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCch--
Q 016338          221 SWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP--  298 (391)
Q Consensus       221 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  298 (391)
                      ...+.+..+ .+.+..   ......++..+++.++.+++.||+|||         ..+..+.+..+++.+.+...++.  
T Consensus       344 ~~~~~~~~~-~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr---------~~~~~~~~~~~~~~l~~~~~~~~~~  410 (505)
T TIGR00898       344 YGLVLDLGN-LGGNIY---LDLFISGLVELPAKLITLLLIDRLGRR---------YTMAASLLLAGVALLLLLFVPVDLY  410 (505)
T ss_pred             HHHhccccc-cCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHcCCCch
Confidence            333333333 454432   333445667888999999999999954         44455555555555544443332  


Q ss_pred             hHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHH
Q 016338          299 AVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVT  377 (391)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  377 (391)
                      +......++..+......+..+.+..|..| +.|+++.|+.+....+|++++|.+.+ +. ..+ ....+.+.++..+++
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~-~~~~~~~~~~~~~~~  487 (505)
T TIGR00898       411 FLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKW-LFLPLVLFGGLALLA  487 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHH-HhhHHHHHHHHHHHH
Confidence            333344444444445555667788889888 78999999999999999999999999 43 344 556666677666666


Q ss_pred             HHHHHHhcc
Q 016338          378 TIFWNLYST  386 (391)
Q Consensus       378 ~~~~~~~~~  386 (391)
                      .+...+++.
T Consensus       488 ~~~~~~lpe  496 (505)
T TIGR00898       488 GILTLFLPE  496 (505)
T ss_pred             HHHHHcCcC
Confidence            666555543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=100.00  E-value=1.3e-34  Score=263.93  Aligned_cols=330  Identities=21%  Similarity=0.262  Sum_probs=248.7

Q ss_pred             ccchhh-HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhcc-chHHHHHHH
Q 016338            2 SVAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH-STASLLAVR   79 (391)
Q Consensus         2 ~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~r   79 (391)
                      ++.+|. +++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+.++.++..++.++++++  + +++.+++.|
T Consensus        21 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~   98 (366)
T TIGR00886        21 SPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--VQSYSVLLLLR   98 (366)
T ss_pred             HHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHH
Confidence            567885 999999999999999999999999999999999999999999999999999999998554  8 999999999


Q ss_pred             HHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh----------hcCchhHH-HHHHHHH
Q 016338           80 AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS----------TIGISGPF-ILFSSLG  148 (391)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~----------~~gwr~~f-~~~~~~~  148 (391)
                      +++|++.+. .+...+++.|++|+|+|++++++.....++|..+++.+++.+.+          ..+||+.| ...+++.
T Consensus        99 ~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~  177 (366)
T TIGR00886        99 LFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGIL  177 (366)
T ss_pred             HHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Confidence            999999664 46678999999999999999999998888998888888877665          24899999 4446555


Q ss_pred             HHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 016338          149 LLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFN  228 (391)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (391)
                      .+..++.....+|+|++++++++.+.   ++ ...+.+++..++.++.+++|+++...+..++..........+.|.|++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (366)
T TIGR00886       178 LLPALLIFFVGADTPPGKPATGKLSF---KG-ARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFK  253 (366)
T ss_pred             HHHHHHHHHhcccCCcccccchhccc---cc-ccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555665543221111100   00 000011111225677889999998888888888888888999999999


Q ss_pred             hhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC--chhHHHHHHH
Q 016338          229 TVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLIT  306 (391)
Q Consensus       229 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  306 (391)
                      +.+|.++.+++.+.....+.+.+++++.|++.||+++|       +...............+.....+  +.........
T Consensus       254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (366)
T TIGR00886       254 DQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-------RKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFV  326 (366)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc-------hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence            98999999999998888999999999999999999976       43333333333333333333332  3333333444


Q ss_pred             HHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHH
Q 016338          307 IALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLA  345 (391)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g  345 (391)
                      ......+...........+..|+++|+++|+.+..+++|
T Consensus       327 ~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       327 ALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence            444445555666777778888999999999999988876

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=6.9e-34  Score=262.88  Aligned_cols=356  Identities=15%  Similarity=0.133  Sum_probs=264.5

Q ss_pred             ccchhhHHHHhCCChhh-----HHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHH
Q 016338            2 SVAVVPLAAKFGWSSSF-----LGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLL   76 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~-----~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   76 (391)
                      .+.+|.+.+|+|.+..+     .|++.+++.++..+++++.|+++||+|||+.+..+..+..++.++++  .+++++.++
T Consensus        34 ~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~  111 (408)
T PRK09874         34 MPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMG--LAQNIWQFL  111 (408)
T ss_pred             hhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHH--HHhhHHHHH
Confidence            46789999999998654     48999999999999999999999999999999999999999888874  458999999


Q ss_pred             HHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHh
Q 016338           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  156 (391)
                      +.|++.|++.+ ..+....++.|+.|+++|+++.++......+|..++|.+++.+.+..+||+.|.+.+++.++..+...
T Consensus       112 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  190 (408)
T PRK09874        112 ILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTL  190 (408)
T ss_pred             HHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999865 45778889999999999999999999999999999999999999999999999999888877766666


Q ss_pred             hccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHH-HHHHHHHHHHHHHHHhhHHHHHhhhCCCc
Q 016338          157 SKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVI-IANITNNWGYFVLLSWMPIYFNTVFNVNL  235 (391)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  235 (391)
                      +..||+++++++.++.+                .++..+.+++|+++... ...............+.|.|.++..+...
T Consensus       191 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (408)
T PRK09874        191 FCIRENFQPVSKKEMLH----------------MREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVS  254 (408)
T ss_pred             HHhccCcccccchhhhH----------------HHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            66666543221110000                01234456777765533 33344444555566778888887433222


Q ss_pred             c---hhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 016338          236 K---QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS  312 (391)
Q Consensus       236 ~---~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (391)
                      .   ..+.+.....++..++.+..|++.||+++|         ..+..+.....+........++.+.......+.+...
T Consensus       255 ~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  325 (408)
T PRK09874        255 NIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE---------KILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAAD  325 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence            1   235555666778888899999999999864         3333444444444444444444444444434444444


Q ss_pred             hhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          313 SFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       313 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      +...+.......+..| +++++.++..+....+|..++|.+.|.+.|..| ++..|...+++.+++.+......+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        326 GALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555 789999999999999999999999999999988 999999998888888776655433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=1.8e-33  Score=258.52  Aligned_cols=336  Identities=16%  Similarity=0.148  Sum_probs=248.5

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~   82 (391)
                      +.+|.+.+|+|.|+++.++..+.+.++..+++++.|+++||+|||+.+..+..+..++..++.+  +++++.+++.|+++
T Consensus        24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~--~~~~~~~~~~~~l~  101 (392)
T PRK10473         24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL--AETSSLFLAGRFLQ  101 (392)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999988844  48999999999999


Q ss_pred             HhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccC
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~  162 (391)
                      |++.+...+...+++.|++|+|+|+++.++.+....+|..++|.+++.+.+..+||+.|++.+++.++..+......||+
T Consensus       102 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  181 (392)
T PRK10473        102 GIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKET  181 (392)
T ss_pred             HhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999988999999999999999999999999999999999999999988889999999999888887777666666665


Q ss_pred             CCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHh
Q 016338          163 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFS  242 (391)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  242 (391)
                      ++++++.++                +..+..++.+|+|+++...+...+.......+..+.|.++++.+|+++.+.+...
T Consensus       182 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  245 (392)
T PRK10473        182 RPARAPAAS----------------SKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIM  245 (392)
T ss_pred             CCcccCCcc----------------chHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHH
Confidence            433211100                0112345677888877766655555555556667788888888899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHH-HHHHHHhhhhcccchhh
Q 016338          243 AVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVL-ITIALSLSSFSQAGYLL  321 (391)
Q Consensus       243 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  321 (391)
                      ....+..++++++.+++.||+++|         .....+.....+........++....... .....+... ..+  ..
T Consensus       246 ~~~~~~~i~~~~~~~~l~~r~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~-~~~--~~  313 (392)
T PRK10473        246 ALTAGVSMTVSFSTPFALGIFKPR---------TLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV-GFG--VA  313 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhH--HH
Confidence            999999999999999999999864         33444444444444443333333222222 222222211 111  12


Q ss_pred             hhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHH
Q 016338          322 NIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAG  372 (391)
Q Consensus       322 ~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~  372 (391)
                      ...+..| ++|+   |.......++..+++.+.+.+.+..| +.......+.
T Consensus       314 ~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g-~~~~~~~~~~  361 (392)
T PRK10473        314 MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG-ISAWNMLIGI  361 (392)
T ss_pred             HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHH
Confidence            3334444 3332   44445556777888888888888777 4443333333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=1.2e-34  Score=273.39  Aligned_cols=373  Identities=19%  Similarity=0.178  Sum_probs=261.6

Q ss_pred             ccchhhHHHHhCCC--------hhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhh-hccch
Q 016338            2 SVAVVPLAAKFGWS--------SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA-ATHST   72 (391)
Q Consensus         2 ~~~~~~i~~~~~~s--------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a-~~~~~   72 (391)
                      ++.+|.+.++++.+        ..+.+++.+++.++..+++++.|+++||+|||+++.++.++..++.+++.+. ...++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (481)
T TIGR00879        48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV  127 (481)
T ss_pred             hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            45677788888777        8999999999999999999999999999999999999999999999888443 22456


Q ss_pred             HHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHH---HHHHhhcCchhHHHHHHHHHH
Q 016338           73 ASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLT---PIMLSTIGISGPFILFSSLGL  149 (391)
Q Consensus        73 ~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~---~~l~~~~gwr~~f~~~~~~~~  149 (391)
                      +.+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..+++.++   ....+..+||+.|.+.++..+
T Consensus       128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~  207 (481)
T TIGR00879       128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAG  207 (481)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999998   666677899999999665555


Q ss_pred             HHHHHHhhccccCCCCCC--CCChhHHHHHHc---CCCcc----------------cccCCCccHHHhhcC------Cch
Q 016338          150 LWLSTWTSKVTNDPCNSP--FVSKSELRLIQA---GKSDS----------------VKKRNPPSLRHLLSK------LPS  202 (391)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~----------------~~~~~~~~~~~~~~~------~~~  202 (391)
                      +.. ...++.||+|+...  +..++..+..++   ..+++                +.+.....+++.++.      +.+
T Consensus       208 ~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (481)
T TIGR00879       208 LLF-LGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLF  286 (481)
T ss_pred             HHH-HHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHH
Confidence            444 34455677653211  111111111000   00000                000001112233332      222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHh
Q 016338          203 WTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGF  282 (391)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  282 (391)
                      +...+..+...........+.|.+.++ .|++..+.+.......++..++.++.+++.||+++|         .....+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---------~~~~~~~  356 (481)
T TIGR00879       287 LGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR---------PLLLIGA  356 (481)
T ss_pred             HHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---------HHHHHHH
Confidence            233333333333344455667777666 799998888888899999999999999999999964         3333344


Q ss_pred             HhhHHHHHHhh-----cCC------chhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHH
Q 016338          283 IGPGVSLLCLN-----YAK------SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIIST  350 (391)
Q Consensus       283 ~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~  350 (391)
                      ....++...+.     ..+      .........+...+......+.......|..| ++|+++.|+.+...+++++++|
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~  436 (481)
T TIGR00879       357 AGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVG  436 (481)
T ss_pred             HHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444433332     111      11222223333333333344556667688777 7999999999999999999999


Q ss_pred             HHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          351 IGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       351 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      .+.+.+.++.| +...|++.+++.+++.+...+..+
T Consensus       437 ~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       437 FLFPTMLESIG-VGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             HHHHHHHHhcC-ccceehhHHHHHHHHHHHHheecc
Confidence            99999999887 888888888887777776655443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=5.6e-34  Score=264.85  Aligned_cols=333  Identities=13%  Similarity=0.105  Sum_probs=228.7

Q ss_pred             ccchhhHHHHhCCChhhHHHHH-HHHH-----HHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchH--
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQ-SSFL-----WGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTA--   73 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~-s~~~-----~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~--   73 (391)
                      ++..|.+.+|++.++.+.+... +...     ++..+++++.|+++||+|||+.+..+..+..++.++++++  ++++  
T Consensus        35 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~--~~~~~~  112 (434)
T PRK15075         35 GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV--PGYATI  112 (434)
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC--CcHHHH
Confidence            5678999999999888765443 3322     2234688999999999999999999999999999999554  8876  


Q ss_pred             ------HHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHH--------hhcCchh
Q 016338           74 ------SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISG  139 (391)
Q Consensus        74 ------~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~--------~~~gwr~  139 (391)
                            .+++.|+++|++.+...+....++.|++|+|+|++++++.+...++|..+++.+++.+.        +.+|||+
T Consensus       113 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~  192 (434)
T PRK15075        113 GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI  192 (434)
T ss_pred             HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence                  46899999999999999999999999999999999999999999999888888887763        4689999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHH-HHHHHHHHHHHHH
Q 016338          140 PFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTV-IIANITNNWGYFV  218 (391)
Q Consensus       140 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  218 (391)
                      +|++......+ ...    .++.+++.+   +...+   ++     +++.++.+++..++++.+.. ....+.....++.
T Consensus       193 ~f~~~~~~~~~-~~~----~~~~~~e~~---~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
T PRK15075        193 PFLIGCLIVPF-IFL----IRRSLEETE---EFLAR---KH-----RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYL  256 (434)
T ss_pred             HHHHHHHHHHH-HHH----HHHhcCCCH---HHHHh---hh-----ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            99975443222 111    122211110   00000   00     00111224445556555443 3334445566777


Q ss_pred             HHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHH-HHH---Hhhc
Q 016338          219 LLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV-SLL---CLNY  294 (391)
Q Consensus       219 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~  294 (391)
                      ...|.|.|+++.+|++..+.++......+++.++.++.|++.||+++|       + .. ..+...... ...   ....
T Consensus       257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r-------~-~~-~~~~~~~~~~~~~~~~~~~~  327 (434)
T PRK15075        257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR-------P-VL-IAFTVLAILTAYPALSWLVA  327 (434)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-------H-HH-HHHHHHHHHHHHHHHHHHHc
Confidence            889999999998899999988888888899999999999999999975       2 22 222222111 111   1112


Q ss_pred             CCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHH-HHHHHHHHhhHhhcccc
Q 016338          295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLG  361 (391)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-g~~i~~~~~g~l~~~~g  361 (391)
                      .++.........+.....+...+....+..|..| +.|+++.|+.+..... ++.++|.+.|.+.|+.|
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        328 APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            2222222222222222333344445566777777 8999999997666654 58889999999999887

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=4.8e-33  Score=255.91  Aligned_cols=332  Identities=16%  Similarity=0.152  Sum_probs=259.1

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      .|.+|.+.+|+|.|+.+.+++.+.+.+++.+++++.|+++||+|||+.+..+..+..++.++..  .+++++.+++.|++
T Consensus        28 ~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~  105 (394)
T PRK11652         28 VPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL--FAHSLTVLIAASAI  105 (394)
T ss_pred             hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH--HHccHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999998884  45999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .|++.+...+....+..|.+++++|+++.+..+.+..++..++|.+++.+.+..|||+.|++.++..++..+...+..||
T Consensus       106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  185 (394)
T PRK11652        106 QGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPE  185 (394)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999888888888999999999999999999999999999999999999998999999999888777666555556666


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHH
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  241 (391)
                      ++++++++  ++               ...++++.+|+|+++...+..+........+..+.+.++++.+|.++.+.+..
T Consensus       186 ~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  248 (394)
T PRK11652        186 TRPADARR--TR---------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSIL  248 (394)
T ss_pred             cCccccch--hH---------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHH
Confidence            54332111  00               11256778889988877666666666666667788889998889999999988


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc--CCchhHHHHHHHHHHHhhhhcccch
Q 016338          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAGY  319 (391)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  319 (391)
                      .....++..++..+.+++.||.++        +............+.......  ..+.+.......+.....+...+..
T Consensus       249 ~~~~~~~~~~g~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  320 (394)
T PRK11652        249 FILPIPAAFFGAWFAGRPNKRFST--------LMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLA  320 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            888778888888888888888873        222222222222222222221  1233333333444444445556667


Q ss_pred             hhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccc
Q 016338          320 LLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  360 (391)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~  360 (391)
                      .....+..|++++++.++.+....+|..+++.+.+.+.+..
T Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        321 TSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            77777888889999999999999999999999999887663

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=7.7e-34  Score=260.09  Aligned_cols=354  Identities=16%  Similarity=0.119  Sum_probs=259.0

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHH
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G   83 (391)
                      ..+.+.+|++.++.+.+++.+.+.+++.+.+++.|+++||+|||+++.++..+..++.+.+.++  ++.   ++.|+++|
T Consensus        25 ~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~--~~~---~~~r~l~G   99 (393)
T PRK11195         25 AAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG--IHP---LLAYGLVG   99 (393)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH--HHH---HHHHHHHH
Confidence            3556788999999999999999999999999999999999999999999999999888877443  443   78899999


Q ss_pred             hhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCC
Q 016338           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDP  163 (391)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  163 (391)
                      ++.+...|...+++.|++|+|+|++++++.+....+|..+||.+++.+.+. .|+..+.+.+...++.. +..+..||++
T Consensus       100 ~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~-~~~~~l~~~~  177 (393)
T PRK11195        100 IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA-LFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence            999999999999999999999999999999999999999999999999885 48877777665544433 3345566655


Q ss_pred             CCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhh
Q 016338          164 CNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSA  243 (391)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  243 (391)
                      +++++.++++.+..++         .....++++++|.+........+............|.|+++.+|.++.+.|.+..
T Consensus       178 ~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~  248 (393)
T PRK11195        178 ARRPGQSWNPIALLRD---------FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQA  248 (393)
T ss_pred             ccccccCCCHHHHHHH---------HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence            4322211111110000         0113467788888776655555555566666777888998889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhh
Q 016338          244 VPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNI  323 (391)
Q Consensus       244 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (391)
                      ...++..++.+..+++.||.+++         ..+..+.. .+.....+...++.+.......+.+...+...+...+..
T Consensus       249 ~~~~g~i~g~~~~~~l~~~~~~~---------~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~  318 (393)
T PRK11195        249 VVAIGIAVGAGAAARLVTLETVL---------RVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALL  318 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccc---------chHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            99999999999999999987643         22233332 223333333333444333333333334444445556666


Q ss_pred             hhcccc-c-hhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          324 QEIAPD-C-AGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       324 ~~~~~~-~-~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      ++..|+ . +|++.++.+..++++..++..+.+.+ +..| .+..+.+.....+++..+...++
T Consensus       319 q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK11195        319 QHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG-VPVVAVIVGFGLLVALAMALLWR  380 (393)
T ss_pred             HhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            777764 3 69999999999999999999999965 5666 67777776666666665554444

>PRK15011 sugar efflux transporter B; Provisional

Probab=100.00  E-value=4.3e-33  Score=255.65  Aligned_cols=350  Identities=15%  Similarity=0.093  Sum_probs=244.7

Q ss_pred             cchhh-HHHHhCCChhhHHHHHHHHHH-HHHHHHHhhhhhhhhcCchHHH-HHHHHHHHHHHhhhhhhhccchHHHHHHH
Q 016338            3 VAVVP-LAAKFGWSSSFLGIVQSSFLW-GYIFSSVIGGALVDKYGGKKVL-AWGVALWSLSTLLTPWAATHSTASLLAVR   79 (391)
Q Consensus         3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~r   79 (391)
                      |.+|. +.+|+|.|++++|++.+...+ ++.++.++.++ +||+||||.+ ..+.+..+++..+.  +++++++.+++.+
T Consensus        36 p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~  112 (393)
T PRK15011         36 PTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLF--AWNRNYFVLLFVG  112 (393)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHH
Confidence            33444 678999999999999877655 55555555555 9999999875 45556666666666  4458888876665


Q ss_pred             HHHHhhhhchhhhHHHHhhhhcCccch--hhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhh
Q 016338           80 AFFGLAEGVAMPAMSTLTSRWFPSHER--ASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~~r--g~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  157 (391)
                      .+.|...+...|...+++.|+.++++|  +...++.+.+.++|.+++|++++.+.+++|||..|++.++..++..+..+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        113 VFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            555444456778888888988876655  345578889999999999999999999999999999999888877777777


Q ss_pred             ccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcC-CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcc
Q 016338          158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSK-LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (391)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  236 (391)
                      ..||.++++++.++ +         .+       ..+   ++ +..+...............+..+.|.|+++++|+++.
T Consensus       193 ~~~~~~~~~~~~~~-~---------~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~  252 (393)
T PRK15011        193 FLPSMRKELPLATG-T---------LE-------APR---RNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEK  252 (393)
T ss_pred             hcCccCCCCccccc-c---------cc-------ccc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            77776543221100 0         00       000   12 2233333333444455556667899999888999999


Q ss_pred             hhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcc
Q 016338          237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQ  316 (391)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (391)
                      +.+.+.....+..+++.++.|+++||+++|       +  ....+..............++.+.......+.....+...
T Consensus       253 ~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~  323 (393)
T PRK15011        253 LAGVMMGTAAGLEIPTMLIAGYFAKRLGKR-------F--LMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILG  323 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChH-------H--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            999888877778888999999999999965       2  2223333333222222233344433333333333333333


Q ss_pred             cchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          317 AGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      +.......|..|++++++.++.+...++|..++|.+.|.+.|+.| ++..+.+..++.+++.+..+..+
T Consensus       324 ~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  391 (393)
T PRK15011        324 GIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIK  391 (393)
T ss_pred             HHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhc
Confidence            344566678888889999999999999999999999999999888 88898888888888777766553

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=4.2e-33  Score=254.73  Aligned_cols=345  Identities=11%  Similarity=0.049  Sum_probs=267.9

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHH----HHHHHHHHHHHhhhhhhhccchHHHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVL----AWGVALWSLSTLLTPWAATHSTASLLAV   78 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~   78 (391)
                      |.+|.+.+|+|.|.+++|++.+.+.+...++++++|+++||+|||+..    ..+..+..+  ..+  ..+++++.+++.
T Consensus        25 p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~--~~~~~~~~l~~~  100 (382)
T TIGR00902        25 PFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFS--AGAHNAWLLFIA  100 (382)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHH--HhhhhHHHHHHH
Confidence            678899999999999999999999999999999999999999985433    222222222  122  245899999999


Q ss_pred             HHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhc
Q 016338           79 RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus        79 r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      |+++|.+.+...|...++..|+  +|+|++++|......++|.+++|++++.+.+++|||..|.+.+....+. +.....
T Consensus       101 ~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~-~~~~~~  177 (382)
T TIGR00902       101 IGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFM-LIGFLI  177 (382)
T ss_pred             HHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHHHc
Confidence            9999999988889988887765  4789999999999999999999999999999999999998876553332 233333


Q ss_pred             cccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchh
Q 016338          159 VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQA  238 (391)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  238 (391)
                      .|+.++++++  + +           ++++..++.++++|||+++...+..++.......+.++.|.|+++ .|.++.+.
T Consensus       178 ~~~~~~~~~~--~-~-----------~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~  242 (382)
T TIGR00902       178 KPTIPPKDAI--P-E-----------DESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASAT  242 (382)
T ss_pred             CCCCCCCccc--c-c-----------cccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHH
Confidence            3332221110  0 0           001122356889999999999998898888999999999999988 89999999


Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccc
Q 016338          239 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG  318 (391)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (391)
                      +.+.....+..++.....+++.||+++         +..+..+.+...+........++.+......++-....+...+.
T Consensus       243 g~l~~~~~~~~i~~~~~~~~l~~r~g~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~  313 (382)
T TIGR00902       243 GLLWGIGVLAEIIIFAFSNKLFQNCSA---------RDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLA  313 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhCCH---------HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888999999999999999984         45566788888888777777777776666666655555666666


Q ss_pred             hhhhhhhccccchhHHHHHHHH-HHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHH
Q 016338          319 YLLNIQEIAPDCAGFLHGIANS-AGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIF  380 (391)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~-~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (391)
                      ...+.++.+++++++++++++. ...+|..++|.+.|.+.|+.| + ..|...+.+.+++.++
T Consensus       314 ~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       314 AMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence            7777777744788999999874 567899999999999999987 5 5566666666666544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=100.00  E-value=4.7e-33  Score=255.47  Aligned_cols=347  Identities=12%  Similarity=0.067  Sum_probs=258.8

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhh-hccchHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA-ATHSTASLLAVRA   80 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~r~   80 (391)
                      ++++|.+++++|.|+++.|++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.++...+ ..++++.+++.|+
T Consensus        23 ~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~  102 (410)
T TIGR00885        23 NPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLF  102 (410)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999999999886332 2468999999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh--------------------------h
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS--------------------------T  134 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~--------------------------~  134 (391)
                      +.|+|.|...+..+.++.+..|+|+|++.+++.+...++|..++|.+++.+..                          .
T Consensus       103 l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (410)
T TIGR00885       103 ILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDL  182 (410)
T ss_pred             HHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987742                          2


Q ss_pred             cCchhHHHHHHHHHHHHHHHHhhc-cccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHH
Q 016338          135 IGISGPFILFSSLGLLWLSTWTSK-VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNN  213 (391)
Q Consensus       135 ~gwr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (391)
                      .+||++|.+.+++.++..+...+. .||.+++     +++            +.+...+.++++|+|+++...+..+++.
T Consensus       183 ~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~l~~f~yv  245 (410)
T TIGR00885       183 ASVQTPYMIIGAVVLAVALLIMLTKMPALNHS-----DAK------------QISFSASLSRLARIRHYREGVIAQFFYV  245 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-----ccc------------cccchhhHHHHHhChhHHHHHHHHHHHH
Confidence            469999999888777655444322 2221110     000            0011124567889999999888888888


Q ss_pred             HHHHHHHHhhHHHHHhhh-CCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHh
Q 016338          214 WGYFVLLSWMPIYFNTVF-NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  292 (391)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      ..+....++++.|.++.. +.+...++...+.......+|+++.+++.||+++|         +.+........+...+.
T Consensus       246 g~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~---------~~l~i~~~~~~~~~ll~  316 (410)
T TIGR00885       246 GVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH---------KVLMAYAIIGMALCLGS  316 (410)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH---------HHHHHHHHHHHHHHHHH
Confidence            888888899999997632 34444455566666678899999999999999853         33444455555555555


Q ss_pred             hcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccccchhH-HHHHHHHHHHHHHHHHHHHhhHhhccc-----cchhHH
Q 016338          293 NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGF-LHGIANSAGTLAAIISTIGTGYFVQWL-----GSFQAF  366 (391)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~g~~i~~~~~g~l~~~~-----g~~~~~  366 (391)
                      ...++..........+ ++.+..+|..++...+..+++..+ +.++....  +|+.+.|++.|.+.|..     |+++..
T Consensus       317 ~~~~~~~~~~~l~~~g-lf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~  393 (410)
T TIGR00885       317 IFAGGHVGLYCLTLCS-AFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTS  393 (410)
T ss_pred             HHcCChHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchH
Confidence            4544444433444444 444444477777776666644443 44444433  99999999999999964     347777


Q ss_pred             HHHHHHHHHHH
Q 016338          367 LTVTAGLYFVT  377 (391)
Q Consensus       367 ~~~~~~~~~~~  377 (391)
                      |.+-..+.+..
T Consensus       394 ~~~~~~~~~~~  404 (410)
T TIGR00885       394 FILPLLCFAVI  404 (410)
T ss_pred             HHHHHHHHHHH
Confidence            77655554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=9.1e-34  Score=268.63  Aligned_cols=360  Identities=15%  Similarity=0.130  Sum_probs=246.5

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++.+|.+.+|+|.|+.+.+++.+.+.+++.+++++.|+++||+|||+.+..+.++.+++.++.++  ++|++.+++.|++
T Consensus        40 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l  117 (496)
T PRK03893         40 TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF--APGYWTLFIARLV  117 (496)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999998854  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .|++.+...+....++.|++|+|+|++++++.....++|..+++.+.+.+.+.++||+.|.+..+.. +..+......||
T Consensus       118 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~-~~~~~~~~~~p~  196 (496)
T PRK03893        118 IGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI-IFALWLRKNLPE  196 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999999999999999998754433 333333333444


Q ss_pred             CCCCCCCCC-hhH-HHHHHcCCCcccccCCCccH---------HHhh----------------------------c--C-
Q 016338          162 DPCNSPFVS-KSE-LRLIQAGKSDSVKKRNPPSL---------RHLL----------------------------S--K-  199 (391)
Q Consensus       162 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~----------------------------~--~-  199 (391)
                      +++.+++.+ +++ .+..+....  ++++.....         ...+                            +  + 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (496)
T PRK03893        197 AEDWKEKHAGKAPVRTMVDILYR--GEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRW  274 (496)
T ss_pred             chhhhhhccccccchhHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccch
Confidence            332111100 000 000000000  000000000         0000                            0  0 


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  279 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  279 (391)
                      +.........+...........++|.|+++.+|+++.+++.+.+...++..+++++.|++.||+++|         ....
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~---------~~~~  345 (496)
T PRK03893        275 PTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR---------KAYV  345 (496)
T ss_pred             hHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---------HHHH
Confidence            0000001111111111123457899999877999999999999999999999999999999999864         2333


Q ss_pred             HHhHhhHHHHHHhhcC-Cch-hHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHh
Q 016338          280 IGFIGPGVSLLCLNYA-KSP-AVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYF  356 (391)
Q Consensus       280 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l  356 (391)
                      .+.....+..+..... ... +..........+......+.......+..| ++|++++|+.+....+|+.++|.+.|.+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l  425 (496)
T PRK03893        346 CSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALI  425 (496)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHH
Confidence            3333333333222222 222 222222222222222233445556677766 7999999999999999999999999999


Q ss_pred             hccccchhHHHHHHHHHHHH
Q 016338          357 VQWLGSFQAFLTVTAGLYFV  376 (391)
Q Consensus       357 ~~~~g~~~~~~~~~~~~~~~  376 (391)
                      .|+.| +...+...+....+
T Consensus       426 ~~~~g-~~~~~~~~~~~~~~  444 (496)
T PRK03893        426 AQRLD-LGTALASLSFSLTF  444 (496)
T ss_pred             hccCC-hHHHHHHHHHHHHH
Confidence            99988 77666555444433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=100.00  E-value=4.9e-33  Score=251.78  Aligned_cols=330  Identities=28%  Similarity=0.451  Sum_probs=289.1

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++..|.+.+++|.|+++.+++.+...++..+++++.|+++||+|||+.+..+..+..++.+...+  +++++.+++.|++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l   96 (352)
T cd06174          19 SPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF--ASSLWLLLVGRFL   96 (352)
T ss_pred             HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH--hccHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999998844  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .|++.+...+...+++.|++|+|+|++.+++.+...++|..+++.+++.+.+..+||+.+.+.++..++..+...+..  
T Consensus        97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  174 (352)
T cd06174          97 LGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL--  174 (352)
T ss_pred             HHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            999999999999999999999999999999999999999999999999999999999999998888777666554331  


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHH
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  241 (391)
                                                            |+++...+..+...........+.|.+.++..|.+..+.+..
T Consensus       175 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (352)
T cd06174         175 --------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLL  216 (352)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence                                                  467777888888888999999999999999779999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchh
Q 016338          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKI-MQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL  320 (391)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (391)
                      .....++..++.++.+++.||.++|         . .+..+.....+........++.+.......+.....+...+...
T Consensus       217 ~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  287 (352)
T cd06174         217 LSLFGLGGILGALLGGLLSDRLGRR---------RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALL  287 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHH
Confidence            9999999999999999999999954         3 55566666777666666666666666666666666666777788


Q ss_pred             hhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 016338          321 LNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       321 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      ....|..| ++|++.+|+.+...+++..++|.+.|.+.|..+ ++..+.+.+++.+++.+....
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHHHhee
Confidence            88888877 899999999999999999999999999999877 889999988888887776543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=4.1e-33  Score=263.61  Aligned_cols=369  Identities=17%  Similarity=0.144  Sum_probs=248.5

Q ss_pred             cchhhHHHHh-----CCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccc------
Q 016338            3 VAVVPLAAKF-----GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS------   71 (391)
Q Consensus         3 ~~~~~i~~~~-----~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~------   71 (391)
                      ..+|.+.+++     +.++.+.+++.+.+.+++.+++++.|+++||+|||+.+.++.++..++.++++++  ++      
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~--~~~~~~~~  114 (502)
T TIGR00887        37 LVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS--PGSSPKSV  114 (502)
T ss_pred             HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc--cCcccchH
Confidence            4456666542     3456678999999999999999999999999999999999999999999888544  44      


Q ss_pred             hHHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh------------------
Q 016338           72 TASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS------------------  133 (391)
Q Consensus        72 ~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~------------------  133 (391)
                      ++.+++.|+++|++.|...+....++.|++|+|+|++++++.+....+|..+++.++..+..                  
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGS  194 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence            78899999999999999999999999999999999999999999999999999988876532                  


Q ss_pred             -----hcCchhHHHHHHHHHHHHHHHHhhccccCCCCC---CCCChhHHHHHH---c-C-C-C-cc------cccCCCcc
Q 016338          134 -----TIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS---PFVSKSELRLIQ---A-G-K-S-DS------VKKRNPPS  192 (391)
Q Consensus       134 -----~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~-~-~-~-~~------~~~~~~~~  192 (391)
                           .++||+.+.+.++.+++..+ ..++.||+|+..   ++.+++..+...   + + . + ++      +++....+
T Consensus       195 ~~~~~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (502)
T TIGR00887       195 CVPAVDYMWRILIGFGAVPALLALY-FRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKAS  273 (502)
T ss_pred             ccchhcccHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhh
Confidence                 24799999887776665444 456789998741   111111111000   0 0 0 0 00      00111135


Q ss_pred             HHHhhcC---CchHH----HHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhH------------HhhhHHHHHHHHH
Q 016338          193 LRHLLSK---LPSWT----VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW------------FSAVPWGTMAVSG  253 (391)
Q Consensus       193 ~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~  253 (391)
                      +++++++   ++.+.    .....+.....+++...+.|.++++ .|++..+.+.            ......++.+++.
T Consensus       274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~  352 (502)
T TIGR00887       274 WSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGY  352 (502)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677653   22211    1223344445666777788999976 6887543221            1223344666788


Q ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC---chhHHHHHHHHHH-Hhhhhcccchhhhhhhccc-
Q 016338          254 YMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK---SPAVAAVLITIAL-SLSSFSQAGYLLNIQEIAP-  328 (391)
Q Consensus       254 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-  328 (391)
                      ++.+++.||+|||         ..+..+..++.++...+....   +........++.. .......+....+..|.+| 
T Consensus       353 ~~~~~l~dr~gRR---------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~  423 (502)
T TIGR00887       353 WVTVFLVDIIGRK---------PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPT  423 (502)
T ss_pred             HHHHHHhhhhcch---------hHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCch
Confidence            8999999999964         333444444444333332211   1111112222222 2222234455667789888 


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc---------chhHHHHHHHHHHHHHHHHHHHh
Q 016338          329 DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG---------SFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       329 ~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      +.|+++.|+.+...+++++++|.+.+.+.|..+         ++...+.+.+++.+++.+..++.
T Consensus       424 ~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~l  488 (502)
T TIGR00887       424 RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLI  488 (502)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEe
Confidence            899999999999999999999999999988531         14556777777777766655433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=100.00  E-value=2e-32  Score=250.35  Aligned_cols=346  Identities=13%  Similarity=0.061  Sum_probs=258.8

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCch----HHHHHHHHHHHHHHhhhhhhhccchHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGK----KVLAWGVALWSLSTLLTPWAATHSTASLLA   77 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   77 (391)
                      .|.+|.+.+|+|.|.+++|++.+++.++..+++++.|+++||+|||    +.+.+...+..  ....  ..+++++.+++
T Consensus        24 ~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~l~i   99 (382)
T PRK11128         24 LPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFA--VAFW--FGAHSFWLLFV   99 (382)
T ss_pred             hhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHH--HHHH--HhcccHHHHHH
Confidence            4678889999999999999999999999999999999999999994    33333222221  1222  23588999999


Q ss_pred             HHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhh
Q 016338           78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  157 (391)
                      .|++.|++.+...|...+++.++  +|+|+++.+......++|..+||++++++.+++|||..|++.++..++..+. ..
T Consensus       100 ~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~-~~  176 (382)
T PRK11128        100 AIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG-QL  176 (382)
T ss_pred             HHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HH
Confidence            99999999988889888888877  4678899999999999999999999999999999999999877655544333 33


Q ss_pred             ccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcch
Q 016338          158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ  237 (391)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  237 (391)
                      ..||++++++    +++          ++++...++++++|+|+++...+..++.........++.|.|+++ .|.++.+
T Consensus       177 ~~~~~~~~~~----~~~----------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~  241 (382)
T PRK11128        177 LRPTIMPQGE----SRQ----------QESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSAST  241 (382)
T ss_pred             ccCCCCCccc----ccc----------ccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhH
Confidence            3343221110    000          011123467899999999998888887777777788899999977 7999999


Q ss_pred             hhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhccc
Q 016338          238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQA  317 (391)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (391)
                      .+.+.+...+...+...+.+++.||+++|         ..+..+.+..++........++.+......++.+...+...+
T Consensus       242 ~g~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  312 (382)
T PRK11128        242 IGYLWSLGVVAEVLIFAFSNRLFRRWSAR---------DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL  312 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99998888888888999999999999854         445566666666666666666666555554444444455556


Q ss_pred             chhhhhhhccccchhHHHHHHHHH-HHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHH
Q 016338          318 GYLLNIQEIAPDCAGFLHGIANSA-GTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIF  380 (391)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (391)
                      ....+..+..++++++..+..+.. ...|..++|.+.|.+.|+.| . ..+...+++.+++.+.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        313 AAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence            666667777677778999988744 56677999999999999988 4 4555566555555443

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=5.5e-33  Score=254.63  Aligned_cols=346  Identities=15%  Similarity=0.110  Sum_probs=258.1

Q ss_pred             hhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhh
Q 016338            6 VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLA   85 (391)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g   85 (391)
                      +.+++++|+|.+++|++.+.+.+++.+++++.|+++||+|||+++.++.++..++.++.++  +++++.+++.|.+.|.+
T Consensus        32 ~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~  109 (395)
T PRK10054         32 IYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL--VNNVTLVVLFFALINCA  109 (395)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999888888744  48999999999999988


Q ss_pred             hhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCCCC
Q 016338           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCN  165 (391)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~  165 (391)
                      .+...+...++..|..|+++|++++++.....++|..++|.+++.+.+ .+||.+|.+.++..++..+...+..||++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~  188 (395)
T PRK10054        110 YSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKA  188 (395)
T ss_pred             HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            888888899999999999999999999999999999999999998875 7999999998877777655555545443322


Q ss_pred             CCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhh--hCCCcchhhHHhh
Q 016338          166 SPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV--FNVNLKQAAWFSA  243 (391)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~  243 (391)
                      +++  +++               +..+.++.+|||+++...+..++..........+.+.|..+.  .+.+....+....
T Consensus       189 ~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  251 (395)
T PRK10054        189 IAT--ETG---------------SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLP  251 (395)
T ss_pred             ccc--chh---------------hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHH
Confidence            110  000               001236778899998888887777777666667777777543  3455566677777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcC-CchhHHHHHHHHHHHhhhhcccchhhh
Q 016338          244 VPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-KSPAVAAVLITIALSLSSFSQAGYLLN  322 (391)
Q Consensus       244 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (391)
                      ...+.....+...+++.||.++|         ..+..+.....+....+... ++.+...+.............+.....
T Consensus       252 ~~~~~~~~~~~~~g~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~  322 (395)
T PRK10054        252 VNAAMVVSLQYSVGRRLNAANIR---------PLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYML  322 (395)
T ss_pred             hhhhheeeehhHHHHHHccCCch---------hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            77676677778888999998753         34445555555554444332 333333333333333334444556666


Q ss_pred             hhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHH
Q 016338          323 IQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWN  382 (391)
Q Consensus       323 ~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  382 (391)
                      ..+..| +.+++..+..+ ...+|..+||.+.|.+.|+.| +...+.+.+.+..+..++..
T Consensus       323 ~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        323 IDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHHHHH
Confidence            777666 78899988655 677899999999999999998 77788777666666655554

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=1.9e-33  Score=258.98  Aligned_cols=343  Identities=24%  Similarity=0.287  Sum_probs=254.7

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.++..  .+++++.+++.|++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  114 (398)
T TIGR00895        37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCA--LATNVTQLLILRFL  114 (398)
T ss_pred             HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HccchHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999888884  44999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..|||+.|++.+++..+..+......||
T Consensus       115 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  194 (398)
T TIGR00895       115 AGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPE  194 (398)
T ss_pred             HhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999877777666666666777


Q ss_pred             CCCCCCCCChhH-HH---HHHcC--CC----cccc---cCCCcc-HHHhhcC---CchHHHHHHHHHHHHHHHHHHHhhH
Q 016338          162 DPCNSPFVSKSE-LR---LIQAG--KS----DSVK---KRNPPS-LRHLLSK---LPSWTVIIANITNNWGYFVLLSWMP  224 (391)
Q Consensus       162 ~~~~~~~~~~~~-~~---~~~~~--~~----~~~~---~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  224 (391)
                      +++...++++++ .+   ....+  .+    .+++   ++..++ .+..+++   +..+...+..++..........+.|
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (398)
T TIGR00895       195 SIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP  274 (398)
T ss_pred             CChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            654221111111 00   00000  00    0000   111111 2223332   2334444555566667777778888


Q ss_pred             HHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHH
Q 016338          225 IYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVL  304 (391)
Q Consensus       225 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (391)
                      .+. ++.|.++.+.+.......++..+++++.+++.||+++|         ....................++.......
T Consensus       275 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (398)
T TIGR00895       275 KLM-VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR---------VTALLLLLGAVFAVLVGSTLFSPTLLLLL  344 (398)
T ss_pred             HHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH---------HHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            554 44899999999999999999999999999999999853         22222222222222222223344444444


Q ss_pred             HHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHh
Q 016338          305 ITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYF  356 (391)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l  356 (391)
                      .++.+...+...+.......|..| ++|+++.|+.+...++|..++|.+.|.+
T Consensus       345 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       345 GAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            444444455556667777888777 8999999999999999999999999976

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.8e-33  Score=256.44  Aligned_cols=373  Identities=18%  Similarity=0.220  Sum_probs=312.7

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHH-HHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLA-VRA   80 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~r~   80 (391)
                      +.+.++++++++-+.++++|+.++....+.+..|+.+.+.||+|.|.+.+.|.++..+|.++.++  +++.|++++ .-+
T Consensus        66 Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF--~~~i~~l~lt~gv  143 (509)
T KOG2504|consen   66 GLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSF--ATSLWQLYLTFGV  143 (509)
T ss_pred             hhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999955  499988765 568


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      +.|+|.+..+.....++..|| +|||+.+.|+...+.++|..+-|.+...+.+..|||+.+++.+.+.+-..+......|
T Consensus       144 i~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  144 IGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            889999999999999999999 5999999999999999999999999999999999999999999998877777777766


Q ss_pred             cCCCCCCC-----------------------------CCh---hHHHHHHcCCCcccccCCCccH----HHhhcCCchHH
Q 016338          161 NDPCNSPF-----------------------------VSK---SELRLIQAGKSDSVKKRNPPSL----RHLLSKLPSWT  204 (391)
Q Consensus       161 ~~~~~~~~-----------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  204 (391)
                      ..++..+.                             ..+   .+....++..++.+....+...    .+++|+|.++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~  302 (509)
T KOG2504|consen  223 LSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLL  302 (509)
T ss_pred             CCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHH
Confidence            33332111                             000   0000000000000100111222    58899999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHh
Q 016338          205 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG  284 (391)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  284 (391)
                      +.+...+...++.....++|.|.++ .|++..+++.+.++.++..++++++.|++.|+...+       ++.+..++.+.
T Consensus       303 ~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~-------~~~~~~~~ll~  374 (509)
T KOG2504|consen  303 LALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIR-------ALVLFLLTLLI  374 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccc-------hHHHHHHHHHH
Confidence            9999999999999999999999997 899999999999999999999999999999998855       66777888888


Q ss_pred             hHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccch
Q 016338          285 PGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSF  363 (391)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~  363 (391)
                      .++..+.....++.+......++.+...+...........|..+ ++-..+.|+...+..++..++|++.|.+.|..|+|
T Consensus       375 ~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y  454 (509)
T KOG2504|consen  375 AGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNY  454 (509)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCe
Confidence            88888888888888777777777666666666666667777777 89999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhc
Q 016338          364 QAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      ...|...+.+.+++..++++.+
T Consensus       455 ~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  455 DHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999998877665

>PRK11010 ampG muropeptide transporter; Validated

Probab=100.00  E-value=2.9e-31  Score=249.12  Aligned_cols=358  Identities=13%  Similarity=0.150  Sum_probs=264.2

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhc-----CchHH-HHHHHHHHHHHHhhhhhhh-ccchHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-----GGKKV-LAWGVALWSLSTLLTPWAA-THSTASL   75 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~a~-~~~~~~~   75 (391)
                      ..+|...++.|.|.+++|.+ +.....+ ++++++|+++||+     ||||. +..+.+..+++....++.. .++++.+
T Consensus        33 ~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l  110 (491)
T PRK11010         33 GTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWL  110 (491)
T ss_pred             HHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence            45788888899999999997 4444444 5899999999999     99985 6677777777776664432 2578889


Q ss_pred             HHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh-hcCchhHHHHHHHHHHHHHHH
Q 016338           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-TIGISGPFILFSSLGLLWLST  154 (391)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~-~~gwr~~f~~~~~~~~~~~~~  154 (391)
                      .+.+++.|++.+...+...+++.|++|+|||+++.++...+..+|.++++.++..+.+ ..|||..|++.+++.++..+.
T Consensus       111 ~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        111 AALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988 579999999999887776555


Q ss_pred             HhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCC
Q 016338          155 WTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN  234 (391)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  234 (391)
                      .+. .||+++++++ +++.            +++...++++.+++|+.|...+..+...........+.+.|+.+++|+|
T Consensus       191 ~~~-~~e~~~~~~~-~~~~------------~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s  256 (491)
T PRK11010        191 TLL-APEPTDTIPV-PKTL------------EQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFD  256 (491)
T ss_pred             HHh-cCCCcccccc-ccch------------hhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            443 5665432111 0000            0001235677888888887776666666677777788888987778999


Q ss_pred             cchhhHHhh-hHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHH---HHHHhhcC-CchhHHHHHHHHHH
Q 016338          235 LKQAAWFSA-VPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV---SLLCLNYA-KSPAVAAVLITIAL  309 (391)
Q Consensus       235 ~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~  309 (391)
                      +.+.+.... ...++.+++.++.|++.||+++|       | .. ..+.....+   ........ ++.........+..
T Consensus       257 ~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~-------~-~l-~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~  327 (491)
T PRK11010        257 AGEVGLVNKTLGLLATIVGALYGGILMQRLSLF-------R-AL-MIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFEN  327 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------H-HH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            999999874 55678999999999999999964       2 22 222222222   11222222 23322222233322


Q ss_pred             Hhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          310 SLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      ...+...+...+...+..+ +.+++..|+.+....+|..+++.+.|.+.|..| |+..|.+..++.+.+.+.....++
T Consensus       328 ~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        328 LCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2233333445666666666 688999999999999999999999999999988 999999999999998887776653

>TIGR00883 2A0106 metabolite-proton symporter

Probab=100.00  E-value=3.3e-32  Score=250.35  Aligned_cols=347  Identities=16%  Similarity=0.160  Sum_probs=247.7

Q ss_pred             cchhhHHHHhC--CChhhHHHHHHH-----HHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchH--
Q 016338            3 VAVVPLAAKFG--WSSSFLGIVQSS-----FLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTA--   73 (391)
Q Consensus         3 ~~~~~i~~~~~--~s~~~~g~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~--   73 (391)
                      +..+.+.+++.  .++++.+...+.     ..++..+++++.|+++||+|||+++..+.++..++.++++++  ++++  
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~   91 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL--PSYATI   91 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC--CChhhh
Confidence            34556666653  455666665543     333445688999999999999999999999999999998554  7764  


Q ss_pred             ------HHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHH--------hhcCchh
Q 016338           74 ------SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISG  139 (391)
Q Consensus        74 ------~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~--------~~~gwr~  139 (391)
                            .+++.|+++|++.+...+...+++.|++|+|+|++..+..+.+..+|..+++.++..+.        +.++||+
T Consensus        92 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~  171 (394)
T TIGR00883        92 GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRI  171 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHH
Confidence                  47899999999999999999999999999999999999999999999999998877654        3578999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCc--hHHHHHHHHHHHHHHH
Q 016338          140 PFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLP--SWTVIIANITNNWGYF  217 (391)
Q Consensus       140 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  217 (391)
                      .|.+.+++.++.... ....||+++++++     +    +     ++++...+.++.+++++  ++......+.......
T Consensus       172 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (394)
T TIGR00883       172 PFLVSAVLVLIGLYL-RRNLEETPVFEKA-----Q----E-----KHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFY  236 (394)
T ss_pred             HHHHHHHHHHHHHHH-HHhcCCChhHHHH-----H----h-----ccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            999877666554333 2233443321110     0    0     01112335677777766  7777777777777888


Q ss_pred             HHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHH--HH-Hhhc
Q 016338          218 VLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS--LL-CLNY  294 (391)
Q Consensus       218 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~  294 (391)
                      ....+.|.|+++++|.++.+.+.......+...+++++.|++.||+++|       + .....+.......  .. ....
T Consensus       237 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-------~-~~~~~~~~~~~~~~~~~~~~~~  308 (394)
T TIGR00883       237 LITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR-------P-VLIIFTVLAALLAVPLLMALLD  308 (394)
T ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-------H-HHHHHHHHHHHHHHHHHHHHhc
Confidence            8889999999887899999999999999999999999999999999965       2 2222222222222  11 1112


Q ss_pred             CCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHH-HHHHHHHHHHHHHhhHhhccccchhHHHHHHHH
Q 016338          295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIAN-SAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAG  372 (391)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~-~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~  372 (391)
                      .++.+......+......+...+.......|..| ++|+++.++.+ ....+|..++|.+.|.+.|+.|.+...++....
T Consensus       309 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       309 SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence            2333333333444444444556667778888777 78999999854 445678889999999999998855555555544


Q ss_pred             HH
Q 016338          373 LY  374 (391)
Q Consensus       373 ~~  374 (391)
                      ..
T Consensus       389 ~~  390 (394)
T TIGR00883       389 LA  390 (394)
T ss_pred             HH
Confidence            43

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.4e-31  Score=224.89  Aligned_cols=355  Identities=16%  Similarity=0.169  Sum_probs=287.5

Q ss_pred             CccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHH
Q 016338            1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (391)
Q Consensus         1 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~   80 (391)
                      ++|+++++++|+|.|.++.|.++++..++..+.+++..+++.|+|.++.+..++++.++|.++-..   .+.+.++.+-.
T Consensus        31 vgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~---~~~~~L~~gt~  107 (395)
T COG2807          31 VGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL---GGLPLLFLGTL  107 (395)
T ss_pred             hhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999999843   47788899999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc-CchhHHHHHHHHHHHHHHHHhhcc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKV  159 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~  159 (391)
                      +.|.|.+...+..++++.+.|| |+-+..+|+++...++|..+++.+...+.++. |||.....-+.++++..+.++...
T Consensus       108 l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~  186 (395)
T COG2807         108 LAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQA  186 (395)
T ss_pred             HHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999996 88999999999999999999999999998887 799999999999888777765432


Q ss_pred             ccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhh
Q 016338          160 TNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA  239 (391)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  239 (391)
                       .+++ ..                 ..+.+..+..+++|+|.-|.+.+.+.++...++....|+|.++.| .|+|++++|
T Consensus       187 -~r~~-~~-----------------~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG  246 (395)
T COG2807         187 -LREQ-AA-----------------SIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAG  246 (395)
T ss_pred             -cccc-cc-----------------ccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhh
Confidence             1110 00                 011122234578999999999999999999999999999999999 799999999


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccch
Q 016338          240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGY  319 (391)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (391)
                      .+.+...+...+..+....+.+|..++        +.........+.++.+-+.+.+.........+++.+..+.+ +..
T Consensus       247 ~llsl~~l~~~~~~ll~P~la~R~~n~--------r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F-~la  317 (395)
T COG2807         247 SLLSLMQLAQLPTALLIPLLARRSKNQ--------RPLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAF-PLA  317 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccc--------chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHH-HHH
Confidence            999999999999999999999996654        33434444445555544444443332222344444443333 333


Q ss_pred             hhhhh--hccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          320 LLNIQ--EIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       320 ~~~~~--~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      .....  ...|++.++-+|+.+.++++-...||.+.|++.|..|+|...+.......++..+.-+...|.+
T Consensus       318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~r~~  388 (395)
T COG2807         318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAGRNR  388 (395)
T ss_pred             HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcchhH
Confidence            33333  3444788999999999999999999999999999999999999888888877777766655543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.3e-34  Score=248.71  Aligned_cols=353  Identities=18%  Similarity=0.184  Sum_probs=269.0

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHH
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G   83 (391)
                      ..+++++.+|+++++.|++.+.+.+.+++++|+.|+++|||+||+++.+|..++.++.+++++.  +.||++++.|.+.|
T Consensus        55 v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--~~Fwq~~l~R~~vG  132 (493)
T KOG1330|consen   55 VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--NHFWQVLLCRGFVG  132 (493)
T ss_pred             hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence            5678999999999999999999999999999999999999999999999999999999999554  99999999999999


Q ss_pred             hhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC-chhHHHHHHHHHHHHHHHHhhccccC
Q 016338           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTSKVTND  162 (391)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~  162 (391)
                      +|.+...|..+++++|.+|.++|++++++++.....|..+|.+.+..+.+..+ |||.|+..++++++..++.+++.+|+
T Consensus       133 iGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  133 IGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             cchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCc
Confidence            99999999999999999999999999999999999999999999999988766 99999999999999999999998887


Q ss_pred             CCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhh---hCCCcchhh
Q 016338          163 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV---FNVNLKQAA  239 (391)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~  239 (391)
                      ++..+++.+.+.+      ......+..++.+...|+|.+....+.+....+....+..|.|.+....   .|.+..+..
T Consensus       213 ~rga~~~~~~~~~------~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~  286 (493)
T KOG1330|consen  213 ERGARDEVDGENK------MVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATL  286 (493)
T ss_pred             ccccccccccCCc------CCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccch
Confidence            7643322111110      0112233455677788888888888888888888888888888766543   355666666


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhhccch--hHHHHHHHHHHhHhhHHHHHHhhcCC--chhHHHHHHHHHHHhhhhc
Q 016338          240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSL--TLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIALSLSSFS  315 (391)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  315 (391)
                      .+..+...++.+|.+.+|.++||+.++.+..  ..........+.......+.+.....  +.+..+++++++.......
T Consensus       287 ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~  366 (493)
T KOG1330|consen  287 IFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFN  366 (493)
T ss_pred             hhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence            7778888899999999999999976542211  11111222223333333333333222  2334444455555555555


Q ss_pred             ccchhhhhhhc-cccchhHHHHHHHHHHHH-HHHHHHHHhhHhhccccchh
Q 016338          316 QAGYLLNIQEI-APDCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLGSFQ  364 (391)
Q Consensus       316 ~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~-g~~i~~~~~g~l~~~~g~~~  364 (391)
                      +....-+..++ +|++|.+++++...+..+ |.+-+|++.|.+.|+.-++.
T Consensus       367 ~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  367 WATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             cccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            55555555554 459999999999888876 55666669999998753344

>PRK09528 lacY galactoside permease; Reviewed

Probab=100.00  E-value=1.7e-31  Score=247.54  Aligned_cols=360  Identities=16%  Similarity=0.100  Sum_probs=240.9

Q ss_pred             hHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhh-hhccc-----hHHHHHHHH
Q 016338            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AATHS-----TASLLAVRA   80 (391)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-a~~~~-----~~~~~~~r~   80 (391)
                      .+.+|+|+|..++|++.+.+.++..+++++.|+++||+|||+++.++..+.+++...... ..++.     .....+.++
T Consensus        36 ~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (420)
T PRK09528         36 WLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGI  115 (420)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355669999999999999999999999999999999999999998876665544332211 11111     111222333


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      ..|.+.....+....+..+ . ++++++.++......++|..++|++++.+.+ .+|+.+|++.+++.++..+..+...+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~  192 (420)
T PRK09528        116 YLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKP  192 (420)
T ss_pred             HhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccc
Confidence            3343333333333333322 2 3556788899999999999999999998876 58999999988887776666655555


Q ss_pred             cCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhh---CCCcch
Q 016338          161 NDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVF---NVNLKQ  237 (391)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~  237 (391)
                      |++++++.. +++.        +++++...++.++.+|||+++...+........+.....+.|.|+.+..   +.+..+
T Consensus       193 ~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (420)
T PRK09528        193 DAPSTAKVA-NALG--------ANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRV  263 (420)
T ss_pred             cccchhhhc-cchh--------cccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHH
Confidence            543321110 0000        0011122234567889998877666665555556666667788776643   456667


Q ss_pred             hhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhccc
Q 016338          238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQA  317 (391)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (391)
                      .+.+.+...+...++.++.|++.||+++|         ..+..+..+..+........++.+.......+.....+...+
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~  334 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAK---------NALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV  334 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcc---------hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            78888888888999999999999999965         334444555555555555566666544444443333333334


Q ss_pred             chhhhhhhccc-cchhHHHHH-HHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          318 GYLLNIQEIAP-DCAGFLHGI-ANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       318 ~~~~~~~~~~~-~~~~~~~g~-~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      ....+..+..| +.+++..+. .+....+|..++|.+.|++.|..| ++..|...+++.++..++.....+++
T Consensus       335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            44455566555 778877665 677788999999999999999988 89999988887776666555544433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9e-32  Score=246.80  Aligned_cols=350  Identities=21%  Similarity=0.188  Sum_probs=266.0

Q ss_pred             HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhh
Q 016338            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEG   87 (391)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~   87 (391)
                      +.+|.+....+.+.+.+++.+++++++++++.+.||++..+.+....+++++-.++...  .+|++.+++.|++.|+.++
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~--~~s~~~~ialr~llGl~es  149 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA--VHSFPGLIALRFLLGLFES  149 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHhc
Confidence            45888899999999999999999999999999999999999999998888888877744  4999999999999999999


Q ss_pred             chhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHH------hhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           88 VAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML------STIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      ..+|....+++.|+.++||++.++++.+..++|.++|.+++..+.      ...||||.|++.++++++..++.++++|+
T Consensus       150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence            999999999999999999999999999999999999999998863      35689999999999999999999999999


Q ss_pred             CCCCCCCCChhHHH----HHH-cCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcc
Q 016338          162 DPCNSPFVSKSELR----LIQ-AGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (391)
Q Consensus       162 ~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  236 (391)
                      .|++.+..+++|+.    ..+ +.....+++.++..+++.+++|..|...+..++.....+++.+|+|.|+++..|+|..
T Consensus       230 ~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~  309 (495)
T KOG2533|consen  230 NPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSEL  309 (495)
T ss_pred             ChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChH
Confidence            99977655555532    122 2222223335667889999999999999999999999999999999999996679999


Q ss_pred             hhhHHhhhHHHHHHHHHHHHHHHHHHHH--hhccchhHHHHHHH-HHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhh
Q 016338          237 QAAWFSAVPWGTMAVSGYMAGKASDSLI--KAGYSLTLVRKIMQ-SIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSS  313 (391)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (391)
                      ++..+..+..++++++.+++|+++||.+  .+       ++... ....+...++...+...+.........+.+.....
T Consensus       310 ~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~-------~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~  382 (495)
T KOG2533|consen  310 QANLLSTPYDVGGIVGLILAGYLSDRLKTIFA-------RRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLI  382 (495)
T ss_pred             HhccccchHHhhhHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhH
Confidence            9999999999999999999999999953  11       33333 33333344443444444333333333333333333


Q ss_pred             hcccchhhhhhhc-cc-cchhHHHHHHHHHHHHHHHHHHHHhh-HhhccccchhHHH
Q 016338          314 FSQAGYLLNIQEI-AP-DCAGFLHGIANSAGTLAAIISTIGTG-YFVQWLGSFQAFL  367 (391)
Q Consensus       314 ~~~~~~~~~~~~~-~~-~~~~~~~g~~~~~~~~g~~i~~~~~g-~l~~~~g~~~~~~  367 (391)
                      ...+......++. .+ .++-+..+........++.++|.+.- ....+++ +...+
T Consensus       383 ~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~-~~~~f  438 (495)
T KOG2533|consen  383 ATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG-WGAVF  438 (495)
T ss_pred             HHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchh-hhhHH
Confidence            3334444444443 33 34445555555555555555554443 3344444 44444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=100.00  E-value=9.6e-30  Score=234.31  Aligned_cols=356  Identities=13%  Similarity=0.076  Sum_probs=251.6

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhc-----CchH-HHHHHHHHHHHHHhhhhhhh-ccchHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-----GGKK-VLAWGVALWSLSTLLTPWAA-THSTASL   75 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~~~~~~~~~~a~-~~~~~~~   75 (391)
                      ..+|.+.+|.|.|.+|+|++..+...  .+.++++|+++||+     |||| .+.++..+.+++..+.++.. .++++.+
T Consensus        20 ~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l   97 (402)
T PRK11902         20 GTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPL   97 (402)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHH
Confidence            46788889999999999999777776  58999999999999     8876 78888888877777764442 2457778


Q ss_pred             HHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh-cCchhHHHHHHHHHHHHHHH
Q 016338           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLST  154 (391)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~  154 (391)
                      .+..++.+...+...+...+++.|+.|+|||+++.++...+.++|..+++.+++.+.+. .|||..|++.+++.++..+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902         98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            88888888888889999999999999999999999999999999999999999998885 59999999988887665554


Q ss_pred             HhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCC
Q 016338          155 WTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN  234 (391)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  234 (391)
                      . +..||+++++++. ++..+            +..+++++++|||.++...+..++..........+.+.++.+++|++
T Consensus       178 ~-~~~~e~~~~~~~~-~~~~~------------~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~  243 (402)
T PRK11902        178 T-LWAPEPEVPARPP-RSLGE------------AVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFS  243 (402)
T ss_pred             H-HhcCCCccccccc-chhHH------------HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Confidence            3 4455543322111 11000            11235778999999988777766666554444455566777778999


Q ss_pred             cchhhHHhhhHH-HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHH---HHHHhhcC-CchhHHHHHHHHHH
Q 016338          235 LKQAAWFSAVPW-GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV---SLLCLNYA-KSPAVAAVLITIAL  309 (391)
Q Consensus       235 ~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~  309 (391)
                      +++.+.+....+ ++.+++.++.+++.||+++|       +.  +..+.....+   ........ ++.+.......+..
T Consensus       244 ~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~-------~~--l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  314 (402)
T PRK11902        244 AGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY-------RS--LMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIEN  314 (402)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH-------HH--HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            999999876654 46888999999999999965       32  2222222222   22222232 23333333322211


Q ss_pred             Hh----hhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          310 SL----SSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       310 ~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      ..    ............++..|   ++..+..+....++...++.+.|.+.|+.| +...|...+.+.+++.++.+..+
T Consensus       315 ~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~~~~~  390 (402)
T PRK11902        315 LCGGMGTAAFVALLMALCNRSFS---ATQYALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALLWLMR  390 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHh
Confidence            22    22233334444444444   444566666777888777889999999999 89999999888888877765554


Q ss_pred             cC
Q 016338          386 TG  387 (391)
Q Consensus       386 ~~  387 (391)
                      ++
T Consensus       391 ~~  392 (402)
T PRK11902        391 GT  392 (402)
T ss_pred             hh
Confidence            43

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=100.00  E-value=3.9e-30  Score=236.59  Aligned_cols=358  Identities=15%  Similarity=0.078  Sum_probs=252.3

Q ss_pred             cchhh-HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhh-hhhc-----cchHHH
Q 016338            3 VAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP-WAAT-----HSTASL   75 (391)
Q Consensus         3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-~a~~-----~~~~~~   75 (391)
                      |.+|. +.+++|.|+++.|++.+.+.+++.+++++.|+++||+|||+.+..+....+++..... +..+     +.+...
T Consensus        23 ~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (396)
T TIGR00882        23 PFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGA  102 (396)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            34554 4567899999999999999999999999999999999999999887766655443221 1111     223445


Q ss_pred             HHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Q 016338           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTW  155 (391)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  155 (391)
                      .+.|++.|++.+...+....+..|..  +++++.++......++|..++|.+++.+.+ .+||.+|++.+.+.++..+..
T Consensus       103 ~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~  179 (396)
T TIGR00882       103 IVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLL  179 (396)
T ss_pred             HHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHH
Confidence            67788999988888888887777753  344567788888899999999999998765 699999999988888776665


Q ss_pred             hhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhh---C
Q 016338          156 TSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVF---N  232 (391)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g  232 (391)
                      +...||+|++++.  +++       .+.++++++.++.++.+|||+++...+..+.....+.....+.|.|+++.+   +
T Consensus       180 ~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~  250 (396)
T TIGR00882       180 MFAKPKAPSSATV--ANA-------LGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQ  250 (396)
T ss_pred             HHhCCCCchhhhh--hcc-------cccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            5555544332110  000       000111222346789999999988777777766666677778888888754   4


Q ss_pred             CCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 016338          233 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS  312 (391)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (391)
                      .+....+...+...+...++....+++.||+++|         ..+..+..+.++........++.+......++.....
T Consensus       251 ~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~---------~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~  321 (396)
T TIGR00882       251 QGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK---------NALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEV  321 (396)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            4556678888888888899999999999999964         3444555555555555455555555444433333332


Q ss_pred             hhcccchhhhhhhccc-cchhHHHHH-HHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHH
Q 016338          313 SFSQAGYLLNIQEIAP-DCAGFLHGI-ANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWN  382 (391)
Q Consensus       313 ~~~~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  382 (391)
                      .........+.++..| +.+++..+. .+....+|+.++|.+.|++.|..| ++..|.+.+++.++..+...
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       322 PFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHHHH
Confidence            2222223334444444 666776665 678899999999999999999988 99999998888777766543

>TIGR00889 2A0110 nucleoside transporter

Probab=100.00  E-value=5.7e-30  Score=236.04  Aligned_cols=355  Identities=11%  Similarity=0.055  Sum_probs=249.2

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCc-hHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGG-KKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~   80 (391)
                      +++.+.+.+++|.|.+|+|++.+.+.++..++++++|+++||+|| |+++.++.++..++..+..  +.++++.+.+.|+
T Consensus        23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  100 (418)
T TIGR00889        23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA--QVTTPAGMFPVLL  100 (418)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHH
Confidence            455667788899999999999999999999999999999999965 7788888888888877774  4489999999999


Q ss_pred             HHHhhhhchhhhHHHHhhhh--------cCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHH
Q 016338           81 FFGLAEGVAMPAMSTLTSRW--------FPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWL  152 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~--------~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~  152 (391)
                      +.|++.+...+...++..++        .....|.+..|      .+|.+++|.+++.+....+|+ +|++.+++.++..
T Consensus       101 l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~  173 (418)
T TIGR00889       101 ANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG  173 (418)
T ss_pred             HHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence            99998877777666554222        22223444444      478899999988874333454 4666666666655


Q ss_pred             HHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhC
Q 016338          153 STWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN  232 (391)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  232 (391)
                      +. .+..||+|+++++.+++..            +....+.++++|+|+++...+..++..........+.|.|+++ .|
T Consensus       174 ~~-~~~~~e~~~~~~~~~~~~~------------~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g  239 (418)
T TIGR00889       174 VF-ALTLPDIPVAKSTAKMSIK------------VMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FG  239 (418)
T ss_pred             HH-HhcCCCCCCCccccccCHH------------HHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hc
Confidence            44 4456666532211111000            0011234678899998888888887777666777888888877 56


Q ss_pred             CCc--------chhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC-ch---hH
Q 016338          233 VNL--------KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK-SP---AV  300 (391)
Q Consensus       233 ~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~  300 (391)
                      .++        ...+...+...+..+++.+..|++.||+++|         ..+..+.+...+....+.... +.   +.
T Consensus       240 ~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r---------~~l~~~~~~~~v~~~l~~~~~~~~~~~~~  310 (418)
T TIGR00889       240 RNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK---------KVMLLSLVAWALRFGFFAYGDPEYFGYAL  310 (418)
T ss_pred             ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHcCcchhhHHH
Confidence            543        5568888888899999999999999999953         455566666666554444322 11   22


Q ss_pred             HHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHH-HHHHHHHHHHHHHhhHhhccccc-----hhHHHHHHHHH
Q 016338          301 AAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIAN-SAGTLAAIISTIGTGYFVQWLGS-----FQAFLTVTAGL  373 (391)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~-~~~~~g~~i~~~~~g~l~~~~g~-----~~~~~~~~~~~  373 (391)
                      .....++.+...+...+....+..|..| ++|++++|+.+ ....+|..++|.+.|.+.|+.|+     |+..|.+.+++
T Consensus       311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~  390 (418)
T TIGR00889       311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGY  390 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            2222333333334445555667777777 89999999997 56789999999999999998652     78888888777


Q ss_pred             HHHHHHHHHHhccCc
Q 016338          374 YFVTTIFWNLYSTGE  388 (391)
Q Consensus       374 ~~~~~~~~~~~~~~~  388 (391)
                      .+++.++..++.+++
T Consensus       391 ~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       391 IAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHhCCc
Confidence            777766666555443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00901 2A0125 AmpG-related permease

Probab=100.00  E-value=6.1e-30  Score=232.11  Aligned_cols=317  Identities=10%  Similarity=0.054  Sum_probs=233.8

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhc-----CchHH-HHHHHHHHHHHHhhhhhhhc-cchHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-----GGKKV-LAWGVALWSLSTLLTPWAAT-HSTAS   74 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~a~~-~~~~~   74 (391)
                      ++.+|.+.+|+|+|.+|+|+..+. .+...+ .+++|+++||+     ||||. ++.+..+.++.....++... .+.+.
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~   85 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL   85 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence            567899999999999999999766 555555 99999999998     89886 56677777777666644311 45566


Q ss_pred             HHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC--------chhHHHHHHH
Q 016338           75 LLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG--------ISGPFILFSS  146 (391)
Q Consensus        75 ~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g--------wr~~f~~~~~  146 (391)
                      +....++.+.+.+...+...+++.|++|+|+|+++.++...+.++|.++++.+++.+.+..+        ||..|++.++
T Consensus        86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai  165 (356)
T TIGR00901        86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTAL  165 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHH
Confidence            77778888888888899999999999999999999999999999999999999999988888        9999999988


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCc---hHHHHHHHHHHHHHHHHHHHhh
Q 016338          147 LGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLP---SWTVIIANITNNWGYFVLLSWM  223 (391)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  223 (391)
                      ..++..+..++..||++++++. ++++.+.            ...++++++++|.   ++...+..++....+.....+.
T Consensus       166 ~~l~~~~~~~~~~~e~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (356)
T TIGR00901       166 LILPGLLVTLFLAKEPQEDASV-PKPLTQA------------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLT  232 (356)
T ss_pred             HHHHHHHHHHHhccCCCccccc-chhHHHH------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777665555555664332111 1111100            1125677778776   7777777777788888888999


Q ss_pred             HHHHHhhhCCCcchhhHHhhhHH-HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcC-------
Q 016338          224 PIYFNTVFNVNLKQAAWFSAVPW-GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-------  295 (391)
Q Consensus       224 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  295 (391)
                      |.|+++ +|+++++.+......+ +...++.++.+++.||+++|       +  .+..+.++.++........       
T Consensus       233 ~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~-------~--~l~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
T TIGR00901       233 TLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL-------Y--ALLLFGIVQALTNAGFVWLASNGHHD  302 (356)
T ss_pred             HHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH-------H--HHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            999998 8999999998877665 57788999999999999964       2  2333334443333322211       


Q ss_pred             ----CchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHH
Q 016338          296 ----KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGT  343 (391)
Q Consensus       296 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~  343 (391)
                          ++.+......++.....+...+...++..+..| ++||+.+|+.+...+
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       303 GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                222333334444455556677777888888766 899999999887764

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-29  Score=218.86  Aligned_cols=356  Identities=15%  Similarity=0.164  Sum_probs=277.0

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhh-hhhccchHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP-WAATHSTASLLAVRA   80 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~r~   80 (391)
                      .+++|++++.|++|..|.+.+...++.+|.+.+++.|.+.+|+|+|+.+++++.++++++.+.. .+...++..++++-+
T Consensus        33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lF  112 (422)
T COG0738          33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALF  112 (422)
T ss_pred             hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999872 123478999999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh-------------------cCchhHH
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-------------------IGISGPF  141 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~-------------------~gwr~~f  141 (391)
                      +.|.|.+....+.+.++....|+++..+.+++.+...++|..++|++++.+..+                   -.||.+|
T Consensus       113 ila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pY  192 (422)
T COG0738         113 ILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPY  192 (422)
T ss_pred             HHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHH
Confidence            999999999999999999999998999999999999999999999999987662                   2488889


Q ss_pred             HHHHHHHHHHHHHHhhcc-ccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHH
Q 016338          142 ILFSSLGLLWLSTWTSKV-TNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL  220 (391)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (391)
                      ...+....+..+...... |+.++.+++.                .+.+.....+++|+|+++...+..+++-..+....
T Consensus       193 l~~~~~lvll~v~~~~~k~p~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~g  256 (422)
T COG0738         193 LILAGLLVLLAVLILLSKLPDLQVAAPSL----------------GASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIG  256 (422)
T ss_pred             HHHHHHHHHHHHHHHhccCCcCCcccccc----------------cccccchHHHHHhChHHHHHHHHHHHHHhHHHHHH
Confidence            888877766655544332 2222221110                00111156889999999999999999999999999


Q ss_pred             HhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhH
Q 016338          221 SWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV  300 (391)
Q Consensus       221 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (391)
                      +|++.|+.+..|.++.++....+..+.+.++|++++.++.+|+...         +.+.+..+...+.+......++...
T Consensus       257 sfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~---------k~Laf~a~~~ill~~~~~l~~g~v~  327 (422)
T COG0738         257 SFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE---------KYLAFYALIAILLLLAVALIGGVVA  327 (422)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH---------HHHHHHHHHHHHHHHHHHHhcChHH
Confidence            9999999998899999999999999999999999999999999853         3334444444444444444455333


Q ss_pred             HHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHH
Q 016338          301 AAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIF  380 (391)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (391)
                       +....+.+.+.+..+|..++...+..|++...+.+ .-.+..+|+++-|++.|++.|+.| ....+......+.+-++.
T Consensus       328 -~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s~-~l~maivGGAiiP~l~G~i~d~~g-~~~~~~~~pllc~lyV~~  404 (422)
T COG0738         328 -LYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSG-LLVMAIVGGAIIPPLQGVIADMFG-IQLTFLIVPLLCYLYVLF  404 (422)
T ss_pred             -HHHHHHHHHHhHHHHHHHHHHHHhccCccccccce-eeeeheecchHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Confidence             34444455566677777887777777755555444 444566899999999999999998 445444444444444444


Q ss_pred             HHHhc
Q 016338          381 WNLYS  385 (391)
Q Consensus       381 ~~~~~  385 (391)
                      +.+..
T Consensus       405 ~~~~~  409 (422)
T COG0738         405 FALIG  409 (422)
T ss_pred             HHHHh
Confidence            44433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.2e-31  Score=226.85  Aligned_cols=349  Identities=20%  Similarity=0.184  Sum_probs=277.6

Q ss_pred             HHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhch
Q 016338           10 AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVA   89 (391)
Q Consensus        10 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~   89 (391)
                      ++.+-+++++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|.......+++.++  .+++++++++|.+||+|.+..
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf--g~sy~~l~vAR~LQgvgsA~~  176 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF--GNSYPMLFVARSLQGVGSAFA  176 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH--cchhHHHHHHHHHhhhhHHHH
Confidence            345667889999999999999999999999999999999999999999999999955  499999999999999999999


Q ss_pred             hhhHHHHhhhhcCccc-hhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 016338           90 MPAMSTLTSRWFPSHE-RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPF  168 (391)
Q Consensus        90 ~~~~~~~i~~~~~~~~-rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (391)
                      ..+..++++|.+|+++ |++++|+.-.+.++|..+||++||.+.+..|.+.+|.+.+++.++-..+.++..+++..+++.
T Consensus       177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~  256 (464)
T KOG3764|consen  177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDS  256 (464)
T ss_pred             HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccc
Confidence            9999999999998764 799999999999999999999999999999999999999999999888877776654433321


Q ss_pred             CChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHH
Q 016338          169 VSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGT  248 (391)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (391)
                                        ..+..++++++++|.++.........+.........++.+..+.+..+.-+.|+.+....+.
T Consensus       257 ------------------~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~  318 (464)
T KOG3764|consen  257 ------------------TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLS  318 (464)
T ss_pred             ------------------cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccc
Confidence                              11223688999999999988888888777777788888888887775565899999899999


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHH---HHHHHHhhhhcccchhhhhhh
Q 016338          249 MAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVL---ITIALSLSSFSQAGYLLNIQE  325 (391)
Q Consensus       249 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  325 (391)
                      ..++..+.|.+.||+++.       |......+.+..+.........++....++-   ..+++............+..|
T Consensus       319 y~ig~~lfg~la~k~~~~-------~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd  391 (464)
T KOG3764|consen  319 YAIGTNLFGKLADKYPHL-------RWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVD  391 (464)
T ss_pred             hhccCchHHHHHHhcCch-------hHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcc
Confidence            999999999999999965       5445555555555555555555554433332   222222222111122222222


Q ss_pred             -cccc---chhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          326 -IAPD---CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       326 -~~~~---~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                       ...+   ..|..+++......+|.++||.++|.+.+..| +.+...+.+...++-.-++..++.
T Consensus       392 ~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG-F~wl~~iig~~n~iyapvl~ll~~  455 (464)
T KOG3764|consen  392 PRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG-FEWLMTIIGILNLIYAPVLLLLRI  455 (464)
T ss_pred             hhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2223   67899999999999999999999999999999 888888888777776655555443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.98  E-value=8.4e-30  Score=263.67  Aligned_cols=340  Identities=15%  Similarity=0.101  Sum_probs=245.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHH---HHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhH
Q 016338           17 SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVA---LWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAM   93 (391)
Q Consensus        17 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~   93 (391)
                      ...++..+++.+.+.++++++|+++||+|||+++.....   ......+..  ...++++++++.|+++|++.+...|+.
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~--~~~~s~~~l~~~~~l~gi~~a~~~p~~  129 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYG--FHLNSVPLLFAALFLMGIHSALFGPIK  129 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHhhchHH
Confidence            457888999999999999999999999999997644222   222222222  223899999999999999999999999


Q ss_pred             HHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhH
Q 016338           94 STLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSE  173 (391)
Q Consensus        94 ~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (391)
                      .+++.|++|+++|++++++.+++.++|.++||++++++.+..+|++.|....+..++. ++..+..|+++.+++..+.+.
T Consensus       130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  208 (1140)
T PRK06814        130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKTGNAAPDLKIDR  208 (1140)
T ss_pred             HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCCCCCCCCCeecc
Confidence            9999999999999999999999999999999999999999999999995444444443 334444555433221111000


Q ss_pred             HHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHH
Q 016338          174 LRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSG  253 (391)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  253 (391)
                      . ..         +.....++.+.++|.++...+..+..++....+..++|.|+++.+|.++...+.+.+...++.+++.
T Consensus       209 ~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~  278 (1140)
T PRK06814        209 N-II---------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGS  278 (1140)
T ss_pred             c-hH---------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence            0 00         0011256788899999999988888888888888999999999899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc--------------------CCchhHHHHHHHHHHHhhh
Q 016338          254 YMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--------------------AKSPAVAAVLITIALSLSS  313 (391)
Q Consensus       254 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~  313 (391)
                      ++.|++.||..+++.         +..+.++.++..+.+..                    ..+.+...+..++.+.+.+
T Consensus       279 ~~~g~l~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  349 (1140)
T PRK06814        279 FLASKLSEGRITLLY---------VPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGG  349 (1140)
T ss_pred             HHHHHHhCCceeeee---------ehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHH
Confidence            999999987665421         11111121111111111                    1333444444444444445


Q ss_pred             hcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHH
Q 016338          314 FSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTT  378 (391)
Q Consensus       314 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  378 (391)
                      ...+...+..++..| +.+|+++|..+....++..+++.+.|.+.+...++...+.+.+.+.++..
T Consensus       350 ~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  415 (1140)
T PRK06814        350 LYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVA  415 (1140)
T ss_pred             HhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            555556677777666 89999999999999999999999999998654446666555554433333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.97  E-value=1.3e-28  Score=229.47  Aligned_cols=359  Identities=15%  Similarity=0.167  Sum_probs=281.5

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhh---hccchHHHHHHHH
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA---ATHSTASLLAVRA   80 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a---~~~~~~~~~~~r~   80 (391)
                      .++-+..+..-|+..++++.+...+...+.++++|.++||++|||+++.+.++..+..+..++.   -..+.+.+++.-+
T Consensus        32 a~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~f  111 (524)
T PF05977_consen   32 ALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTF  111 (524)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            3455666777889999999999999999999999999999999999999998876655544322   1247788999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      +.|++.+...|+.++++.|..|+|+..++.++.+...++...+||.++|.+...+|-.+.|.+.++..++.........+
T Consensus       112 l~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~  191 (524)
T PF05977_consen  112 LLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKP  191 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999999999899889999887765554444444433


Q ss_pred             cCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhH
Q 016338          161 NDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW  240 (391)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  240 (391)
                      +.++++ ..+++-.+            .-...++.+.++|.+....+..++.++....+...+|.+.++.+|.++...|+
T Consensus       192 ~~~~~~-~~~e~~~~------------~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGl  258 (524)
T PF05977_consen  192 PPPPSS-LPRERFFS------------ALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGL  258 (524)
T ss_pred             cccccc-cchhhhhh------------hHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHH
Confidence            322211 11111111            11224555666777776666666666666677788999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchh
Q 016338          241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL  320 (391)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (391)
                      +.+..+++.++|.++.+++.+|++++         .++..+.+..++..+.+...++.+......++.+...........
T Consensus       259 l~a~~gvGai~Gal~~~~l~~~~~~~---------~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~  329 (524)
T PF05977_consen  259 LLAAFGVGAILGALLLPRLRRRLSSR---------RLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN  329 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccCcc---------hhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998887743         344566677777777788877777766666666655555666666


Q ss_pred             hhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          321 LNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       321 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      +..++..| +.||++++++++....+..+|..+.|.+.|..| ....+.+.++..+++.++....+
T Consensus       330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~~~~~~  394 (524)
T PF05977_consen  330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALIALRFP  394 (524)
T ss_pred             HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHhc
Confidence            77777777 899999999999999999999999999999998 77788877777777766665443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.97  E-value=1.9e-30  Score=248.81  Aligned_cols=265  Identities=16%  Similarity=0.214  Sum_probs=214.3

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhh-------------
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA-------------   68 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~-------------   68 (391)
                      ++.+|+++++|+++.++.|++.+.+.+++.++.++.++++||+|||+.+.++.++.+++++++++..             
T Consensus        53 ~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        53 NSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             HhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            5678999999999999999999999999999999999999999999999999999999999985541             


Q ss_pred             ------------------------------------ccchHHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHH
Q 016338           69 ------------------------------------THSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGI  112 (391)
Q Consensus        69 ------------------------------------~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~  112 (391)
                                                          ...+..++++|+++|+|.+..++...+++.|++|+++|++++++
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i  212 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI  212 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence                                                00255678999999999999999999999999999999999999


Q ss_pred             HHhhhhhhHHHHhhHHHHHHhhc----------------------CchhHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 016338          113 CMGGFHLGNVVGLLLTPIMLSTI----------------------GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS  170 (391)
Q Consensus       113 ~~~~~~lg~~~g~~~~~~l~~~~----------------------gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (391)
                      .+....+|..+|+++++++.+.+                      +||..|++.+++.++..+..+.+.++.|++.++.+
T Consensus       213 ~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~  292 (633)
T TIGR00805       213 LESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVN  292 (633)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccc
Confidence            99999999999999999987642                      27778999888888877666555544443321111


Q ss_pred             -h-hHHHHHHcCCCcc------cccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHh
Q 016338          171 -K-SELRLIQAGKSDS------VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFS  242 (391)
Q Consensus       171 -~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  242 (391)
                       + ++.+..++..++.      ..++....++++++||.++...+..++.....+++.+|+|.|+++++|+++.+++++.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~  372 (633)
T TIGR00805       293 VDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLI  372 (633)
T ss_pred             hhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHh
Confidence             1 1100000000000      0011123567899999999999999999999999999999999999999999999998


Q ss_pred             hhHHH-HHHHHHHHHHHHHHHHHhh
Q 016338          243 AVPWG-TMAVSGYMAGKASDSLIKA  266 (391)
Q Consensus       243 ~~~~~-~~~~~~~~~g~l~dr~~~~  266 (391)
                      ....+ +.+++.++.|++.||++.+
T Consensus       373 ~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       373 GVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             hhhhhhHHHHHHhhhhheeeeeccc
Confidence            87766 5688999999999999855

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=3.5e-29  Score=259.93  Aligned_cols=354  Identities=19%  Similarity=0.123  Sum_probs=254.9

Q ss_pred             hhhHHHHhCCCh--hhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhh-hccchHHHHHHHHH
Q 016338            5 VVPLAAKFGWSS--SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA-ATHSTASLLAVRAF   81 (391)
Q Consensus         5 ~~~i~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~r~l   81 (391)
                      .+.+.++++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++..+..++..+. .+++++.+++.|++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  112 (1146)
T PRK08633         33 QNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFL  112 (1146)
T ss_pred             HHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            445666676654  447999999999999999999999999999999999987766665554322 34789999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh--------c-CchhHHHHHHHHHHHHH
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--------I-GISGPFILFSSLGLLWL  152 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~--------~-gwr~~f~~~~~~~~~~~  152 (391)
                      +|++.+...+...+++.|++|+++|++++++.+.+.++|.++|+.+++++.+.        + +|++.+.+..+...+..
T Consensus       113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (1146)
T PRK08633        113 LGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLG  192 (1146)
T ss_pred             HHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999876        2 34555544444444333


Q ss_pred             HHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhC
Q 016338          153 STWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN  232 (391)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  232 (391)
                      ++..+..||.++......+++.        ....+.....++.++++|.++...+..++..........++|.|+++.+|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  264 (1146)
T PRK08633        193 LIFAYRLPKVPAAAPEVFDKKK--------YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLG  264 (1146)
T ss_pred             HHHHhcCcCCCCCCcccccccc--------cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence            4444445665543322110000        00001112346678888988888877777777777888899999999899


Q ss_pred             CCcc-hhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHh
Q 016338          233 VNLK-QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSL  311 (391)
Q Consensus       233 ~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (391)
                      .+.. ..+++.+...++.+++.++.+++.||.+++         ..+.++.++.+++.+.+....+.+...+..++.+..
T Consensus       265 ~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  335 (1146)
T PRK08633        265 LDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL---------GLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFS  335 (1146)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc---------cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            9998 899999999999999999999999998854         233344445555555554444444444444444444


Q ss_pred             hhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHH
Q 016338          312 SSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYF  375 (391)
Q Consensus       312 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~  375 (391)
                      .+...+....+..+..| +.||+++|+.+.+.+++..+++.+.+.+......+...+.+.+.+.+
T Consensus       336 ~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        336 AGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            45555556677777666 89999999999999999988888777665421123444444444433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.2e-28  Score=220.42  Aligned_cols=356  Identities=17%  Similarity=0.131  Sum_probs=259.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhh-hccchHHHHHHHHHHHhhhhchhhhHHHHh
Q 016338           19 LGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA-ATHSTASLLAVRAFFGLAEGVAMPAMSTLT   97 (391)
Q Consensus        19 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i   97 (391)
                      .+.+.+++.+|.++|++..+.++||+|||..+.+..++..++.++..++ ..+++++++++|++.|+..|......+.++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            5778999999999999999999999999999999999988888876554 358899999999999999999999999999


Q ss_pred             hhhcCccchhhHHHHHHhhhhhhHHHHhhHHH--HHHhhcCchhHHHHHHHHHHHHHHHHhhccccCCCCCCC--CChhH
Q 016338           98 SRWFPSHERASAIGICMGGFHLGNVVGLLLTP--IMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPF--VSKSE  173 (391)
Q Consensus        98 ~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~--~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  173 (391)
                      .|..|.+.||..-...+.+..+|..++..++.  .+.+.-.|++.+....+++++..+. ..+.||+|+..-.  +++++
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~~PESPk~Ll~~k~~~~~  220 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPFLPESPKYLLIKKGDEEE  220 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCCcchHHHHcCCHHH
Confidence            99999999999999999999999999977763  3334556999999888877776555 4567999974211  11111


Q ss_pred             H-HH-----------------HHcCCCcccccCCCccHHHhhcCCchHHHHHH-----HHHHHHHHHHHHHhhHHHHHhh
Q 016338          174 L-RL-----------------IQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIA-----NITNNWGYFVLLSWMPIYFNTV  230 (391)
Q Consensus       174 ~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  230 (391)
                      . +.                 .++.++++.++++..+++++++||..+.-...     ......+......|...++++ 
T Consensus       221 A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-  299 (485)
T KOG0569|consen  221 ARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-  299 (485)
T ss_pred             HHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-
Confidence            0 00                 01111111222356678999998766553222     222333445555666667777 


Q ss_pred             hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcC-----Cc-hhHH---
Q 016338          231 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-----KS-PAVA---  301 (391)
Q Consensus       231 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~---  301 (391)
                      .|++..++-+.....++...+..+++.++.||.|||         .++..+..++.+..+.+...     .. .+..   
T Consensus       300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR---------pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~  370 (485)
T KOG0569|consen  300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR---------PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLC  370 (485)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            799999999999999999999999999999999954         55556666655555444321     11 2222   


Q ss_pred             HHH-HHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHH
Q 016338          302 AVL-ITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTI  379 (391)
Q Consensus       302 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  379 (391)
                      +.. +.....+.....|..+.+.+|+.| +.|+.+++.......+..++-......+.+..|+  ..|....+.+++..+
T Consensus       371 i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i  448 (485)
T KOG0569|consen  371 IAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLI  448 (485)
T ss_pred             HHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHH
Confidence            122 222222333345667778889888 8999999999999999999999999999999994  566666666666666


Q ss_pred             HHHHhccC
Q 016338          380 FWNLYSTG  387 (391)
Q Consensus       380 ~~~~~~~~  387 (391)
                      ..+..-++
T Consensus       449 ~~~~~lPE  456 (485)
T KOG0569|consen  449 YLYRYLPE  456 (485)
T ss_pred             HHHHhCcc
Confidence            55554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.97  E-value=2.8e-28  Score=227.92  Aligned_cols=379  Identities=12%  Similarity=0.083  Sum_probs=261.7

Q ss_pred             chhhH-HHH--hCCChhhHHHHHHHHHHHHHHHHHhhhhhhhh-cCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHH
Q 016338            4 AVVPL-AAK--FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVR   79 (391)
Q Consensus         4 ~~~~i-~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r   79 (391)
                      .+|.+ .++  +|.|..+.+++.+.+.+++.++++++|+++|| +|||+++.++..+.+++.++.++  +++++.+.++|
T Consensus        32 ~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~--~~~~~~~~~~~  109 (475)
T TIGR00924        32 ILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM--SIYPDLIFYGL  109 (475)
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh--cccHhHHHHHH
Confidence            45555 444  89999999999999999999999999999999 89999999999999999998854  47888899999


Q ss_pred             HHHHhhhhchhhhHHHHhhhhcCccc---hhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHh
Q 016338           80 AFFGLAEGVAMPAMSTLTSRWFPSHE---RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~~---rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  156 (391)
                      .+.|+|.|...+...++++|++|+++   |++++++.+...++|..+||.+++++.++.|||+.|.+.++..++..+...
T Consensus       110 ~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~  189 (475)
T TIGR00924       110 GTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFF  189 (475)
T ss_pred             HHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998754   888999999999999999999999999999999999997765544433332


Q ss_pred             hccc---cCCCCCCCCChhHHHHHH------------------cCCCcc------------------cccCCCccHHHhh
Q 016338          157 SKVT---NDPCNSPFVSKSELRLIQ------------------AGKSDS------------------VKKRNPPSLRHLL  197 (391)
Q Consensus       157 ~~~~---~~~~~~~~~~~~~~~~~~------------------~~~~~~------------------~~~~~~~~~~~~~  197 (391)
                      ...+   +.|+++++.++++++...                  ......                  +.+++..+..+..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (475)
T TIGR00924       190 AGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARN  269 (475)
T ss_pred             HcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHh
Confidence            2221   222111111111110000                  000000                  0000001111111


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcch----hhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 016338          198 SKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ----AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLV  273 (391)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~  273 (391)
                      |.+.+..+.+...+.+..+....+.++.+.++..+.+...    .+.+.+...+..++.+++..++..|..+|+......
T Consensus       270 ~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~  349 (475)
T TIGR00924       270 KMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTP  349 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcH
Confidence            2223444555566666777777777888877754444222    667778888888888777766666776653221111


Q ss_pred             HHHHHHHHhHhhHHHHHHhhc---------CCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHH
Q 016338          274 RKIMQSIGFIGPGVSLLCLNY---------AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGT  343 (391)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~  343 (391)
                      .|  +.++.++.+++......         ..+.++......+.........|.......+..| +.||+.+|+......
T Consensus       350 ~k--~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~  427 (475)
T TIGR00924       350 LK--FTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQA  427 (475)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            11  24555555555444431         2355666666666666677777888888888777 799999999999999


Q ss_pred             HHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccC
Q 016338          344 LAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTG  387 (391)
Q Consensus       344 ~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (391)
                      +|..+++.+.....+..+ +...+...+...++..++.++..+.
T Consensus       428 ~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  470 (475)
T TIGR00924       428 MGSLLGGYLATFGAVPQG-VTGVFGKIGLVTLLVGVVMALMVPW  470 (475)
T ss_pred             HHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988877665 6667777776666666655554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.97  E-value=1.7e-27  Score=218.59  Aligned_cols=350  Identities=13%  Similarity=0.071  Sum_probs=248.3

Q ss_pred             cchhhHHHHhCCChhhHHHH--HHHHHHHHHHHHHhhhh-hhhhcCchHHHHHHHHHH-HHHHhhhh-hhhccc-hHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIV--QSSFLWGYIFSSVIGGA-LVDKYGGKKVLAWGVALW-SLSTLLTP-WAATHS-TASLL   76 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~--~s~~~~~~~~~~~~~g~-l~dr~Grr~~~~~~~~~~-~~~~~~~~-~a~~~~-~~~~~   76 (391)
                      |.+|.+.+|.|.|.+++|.+  .+.+.....+.+|+.+. ..||+||||..++...+. .......+ +...++ ..+++
T Consensus        22 p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (390)
T TIGR02718        22 DALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAV  101 (390)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence            67899999999999999997  46778888888888855 799999999875555332 21122221 112222 33444


Q ss_pred             HHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHh
Q 016338           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  156 (391)
                      ..-.+..+..+...+...++..|..++|+++...+....+..+|..+|+...+++.+++|||.+|++.+++.++..+..+
T Consensus       102 ~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~  181 (390)
T TIGR02718       102 GLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVL  181 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            55566667777788888888899998888899999999999999999999999999999999999999988877666655


Q ss_pred             hccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcc
Q 016338          157 SKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (391)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  236 (391)
                      +..||++++++. ++                +...+.++.+|+|.++......++..........+.+.|++| .|++++
T Consensus       182 ~~~~~~~~~~~~-~~----------------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~  243 (390)
T TIGR02718       182 WLKDRAVASPEA-PL----------------ARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLE  243 (390)
T ss_pred             HcCCCCcCcccc-ch----------------hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHH
Confidence            554443321110 00                011246788999999888888888888888888899999988 799999


Q ss_pred             hhhHHhhhHHH-HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHH-HHHHh--hc---CCchhHHHHHHHHHH
Q 016338          237 QAAWFSAVPWG-TMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV-SLLCL--NY---AKSPAVAAVLITIAL  309 (391)
Q Consensus       237 ~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~---~~~~~~~~~~~~~~~  309 (391)
                      +.+........ ...++.++.|++.||+++|       |  .+..+...... .....  ..   .++.........+..
T Consensus       244 ~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~-------~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (390)
T TIGR02718       244 WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW-------R--TFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGS  314 (390)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH-------H--HHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHH
Confidence            99998887764 6667789999999999965       2  22223322211 11111  11   122222222333333


Q ss_pred             Hhhhhcccchhhh-hhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHH
Q 016338          310 SLSSFSQAGYLLN-IQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIF  380 (391)
Q Consensus       310 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (391)
                      ...+...+..... .+...+ +++++.+++.+...++|..++|.+.|.+.|+.| ++..|...+++.+++.+.
T Consensus       315 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       315 LITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHH
Confidence            3334444444444 344555 789999999999999999999999999999988 888888887777666543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.97  E-value=2.4e-29  Score=214.20  Aligned_cols=351  Identities=19%  Similarity=0.124  Sum_probs=247.1

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHH
Q 016338           15 SSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMS   94 (391)
Q Consensus        15 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~   94 (391)
                      +....|.+.+.+++.+.+.++.+|.++||+|||+++++++...++...+.  +.+.||..++.+|++.|+.-|.. ....
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~--~~S~~F~afv~aR~l~Gi~kgnl-~v~r  142 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLW--ALSRNFAAFVLARFLGGIFKGNL-SVIR  142 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhccCch-HHHH
Confidence            34558999999999999999999999999999999999999999998888  55699977777799999998876 6789


Q ss_pred             HHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh---hcCchhHHHHHHH----HHHHHHHHHhhccccCCCCCC
Q 016338           95 TLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS---TIGISGPFILFSS----LGLLWLSTWTSKVTNDPCNSP  167 (391)
Q Consensus        95 ~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~---~~gwr~~f~~~~~----~~~~~~~~~~~~~~~~~~~~~  167 (391)
                      ++++|..++|+|+++++.....+++|.++||.+|+++.+   ..| +.+|.....    ....-.....+++||+-+.++
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk  221 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRK  221 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccchh
Confidence            999999999999999999999999999999999999987   223 222332222    222212333445677644433


Q ss_pred             CCChhH-HHHHHcCCCcccccCCCccHHHhhcCCchH-------HHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhh
Q 016338          168 FVSKSE-LRLIQAGKSDSVKKRNPPSLRHLLSKLPSW-------TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA  239 (391)
Q Consensus       168 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  239 (391)
                      ++++.. .++..+.+ .+..+......-..+||+...       ...+-.+.+...+..+.++.+.+..+.+|+++.+.|
T Consensus       222 ~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G  300 (451)
T KOG2615|consen  222 RNDEHSTLQEAADDR-LALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQG  300 (451)
T ss_pred             hcccccchhhhhhhh-hhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhhe
Confidence            331111 11111100 000000011112334444322       233444555555555555555555677999999999


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccch
Q 016338          240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGY  319 (391)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (391)
                      .+.+..++.+.+.+.......||.+..       .+..+......+.-....+...+.+........+..+......+..
T Consensus       301 ~vl~~tGl~m~~~ql~~~~~l~~~~~~-------~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~L  373 (451)
T KOG2615|consen  301 KVLSTTGLLMLVIQLALVPILPRYKGN-------IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCL  373 (451)
T ss_pred             eeeehhhHHHHHHHHhccccccccccc-------hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHH
Confidence            999998888888888777777776532       3345556666666666677776767666666666667777777888


Q ss_pred             hhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHH
Q 016338          320 LLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVT  377 (391)
Q Consensus       320 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  377 (391)
                      +.......| ++||+..|+..+.+.++.++||.+.|.+..+...-+..+..-+.+.+..
T Consensus       374 t~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~  432 (451)
T KOG2615|consen  374 TSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP  432 (451)
T ss_pred             HHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence            888888888 8999999999999999999999999998876543444444444444444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.97  E-value=4.1e-28  Score=226.38  Aligned_cols=333  Identities=14%  Similarity=0.118  Sum_probs=243.0

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhh----cCchH-HHHHHHHHHHHHHhhhhhhhccc------h
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK----YGGKK-VLAWGVALWSLSTLLTPWAATHS------T   72 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~a~~~~------~   72 (391)
                      ..+.+.+++|+|+.++|++.++..+..++..|+.|+++||    +|||| .++.+....+++.+++.+.  ++      .
T Consensus        22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~--~~~~~~~~~   99 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT--PDFSATGKL   99 (437)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC--CCCCcchHH
Confidence            3456778899999999999999999999999999999998    67754 6777888888777776333  32      4


Q ss_pred             HHHHHHHHHHHhhhhchhhhHHHHhhhhc-CccchhhHHHHHHhhhhhhHHHHhhHHHHHHh-------hcCchhHHHHH
Q 016338           73 ASLLAVRAFFGLAEGVAMPAMSTLTSRWF-PSHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGISGPFILF  144 (391)
Q Consensus        73 ~~~~~~r~l~G~g~~~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~-------~~gwr~~f~~~  144 (391)
                      ..+++.+++.+++.+...+...++..|.. ++|||++..++.+.+..+|..+++.+.+.+..       ..+||+.+.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~  179 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL  179 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence            56677888899988888788888889887 56889999999999999998887776655543       45899999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhH
Q 016338          145 SSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMP  224 (391)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (391)
                      +++.++..+..++..||++++++.. +            +++.+..+.++++++||.++...+..++..........+.+
T Consensus       180 ~~l~~~~~~~~~~~~~e~~~~~~~~-~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (437)
T TIGR00792       180 ALIGVVSLIICFFGTKERYSEIPKN-I------------EKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQV  246 (437)
T ss_pred             HHHHHHHHHHHHcCCEecCCCCCcc-c------------ccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhh
Confidence            9998887777777777755321110 0            00011223567888999999888888888777777766777


Q ss_pred             HHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC-chhHHHH
Q 016338          225 IYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAV  303 (391)
Q Consensus       225 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  303 (391)
                      .|.++.++ ++.+.+.+.....++.+++.++.+++.||+++|         .....+..+..+........+ +.+...+
T Consensus       247 ~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (437)
T TIGR00792       247 YYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK---------ILFAGGILLMVLGYLIFFFAGSNLPLILV  316 (437)
T ss_pred             eeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence            77766555 455667777777889999999999999999954         333445544444444443332 3333333


Q ss_pred             HHHHHHHhhhhcccchhhhhhhcc--------ccchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          304 LITIALSLSSFSQAGYLLNIQEIA--------PDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      ..++.+...+...+...+...|..        ++.+|.+.|+.+....+|..+++.+.|.+.|..|
T Consensus       317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       317 LIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            334444444444555556655543        3567999999999999999999999999998766

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.96  E-value=7.1e-27  Score=218.48  Aligned_cols=371  Identities=15%  Similarity=0.137  Sum_probs=239.0

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhh-cCchHHHHHHHHHHHHHHhhhhhhhccchHH-HHHHHHH
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPWAATHSTAS-LLAVRAF   81 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~r~l   81 (391)
                      +...+++++|.+.++.+++.+.+.....+..+++|+++|| +||||++.++.+++.++.+.++++  ++... ++++|.+
T Consensus        37 l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~--~~~~~ll~~~~~l  114 (489)
T PRK10207         37 LAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS--LLKPDLIFIALGT  114 (489)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHH
Confidence            4456788999999999999999998888999999999999 999999999999999999998554  55443 5589999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCcc--chhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSH--ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKV  159 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  159 (391)
                      +|+|.|...|...+++.|.+|++  +|+++++++..+.++|..+||.+++++.++.|||+.|++.++ ..+..++.+...
T Consensus       115 ~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~  193 (489)
T PRK10207        115 IAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFAC  193 (489)
T ss_pred             HHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHc
Confidence            99999999999999999999877  457899999999999999999999999999999999998654 333333333222


Q ss_pred             ccCCCCC---C-CCChhHHHHH----------------HcCCCc-----------------ccccCCCccHHHhhcCCch
Q 016338          160 TNDPCNS---P-FVSKSELRLI----------------QAGKSD-----------------SVKKRNPPSLRHLLSKLPS  202 (391)
Q Consensus       160 ~~~~~~~---~-~~~~~~~~~~----------------~~~~~~-----------------~~~~~~~~~~~~~~~~~~~  202 (391)
                      ++..++.   + +.+.+.....                .+....                 .++++.    .+.+|+|.+
T Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~----~~~~r~r~~  269 (489)
T PRK10207        194 RGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL----DKTGRNKMF  269 (489)
T ss_pred             chhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Confidence            3221111   1 1001100000                000000                 000000    145566655


Q ss_pred             HHHHHH--HHHHHHHHHHHHHhhHHHHHhhhCCCc----chhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 016338          203 WTVIIA--NITNNWGYFVLLSWMPIYFNTVFNVNL----KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKI  276 (391)
Q Consensus       203 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~  276 (391)
                      ....+.  .......+....+.++.+.++..+.+.    .....+.....+..++..++.+++.||+++|+.......|.
T Consensus       270 ~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~  349 (489)
T PRK10207        270 VAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKF  349 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            443322  444555566666777888875333321    12233444455666677888899999999875322222232


Q ss_pred             HHHHHhHhhHHHHHH-------hhcC---CchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHH
Q 016338          277 MQSIGFIGPGVSLLC-------LNYA---KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLA  345 (391)
Q Consensus       277 ~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g  345 (391)
                      .  .++++.++++..       ....   .+.++.....++......+..+.......+..| +.++.++|+.+....+|
T Consensus       350 ~--~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig  427 (489)
T PRK10207        350 T--LGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAA  427 (489)
T ss_pred             H--HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            2  333333333321       1111   123444444444444555555555555555445 89999999999999999


Q ss_pred             HHHHHHHhhHhhc---------cccchhHHHHHHHHHHHHHHHHHHH
Q 016338          346 AIISTIGTGYFVQ---------WLGSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       346 ~~i~~~~~g~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      +.++..+......         ..+.+...|...+...+++.++++.
T Consensus       428 ~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        428 FLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             HHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888865531         0112556666666666555555444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=4.7e-27  Score=199.02  Aligned_cols=368  Identities=17%  Similarity=0.125  Sum_probs=271.2

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~   82 (391)
                      .+.|.+.+.+|.+..|..++......+..+++..+|..+|++|||+.+....+...+...+.  ..++|+..+++.|.+.
T Consensus        99 ~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is--~~spnf~~L~~f~~l~  176 (528)
T KOG0253|consen   99 LILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVIS--GASPNFASLCVFRALW  176 (528)
T ss_pred             HHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhh--cCCCCeehhhHHHHHH
Confidence            35677888899999999999999999999999999999999999999999999999999998  4569999999999999


Q ss_pred             HhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccC
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~  162 (391)
                      |+|.|+ .|...++-.|..|..+|...+-+. ..+.+|.+....+.-.+..++||||.....+.+..+.+.. .+++||+
T Consensus       177 ~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f-~~w~~ES  253 (528)
T KOG0253|consen  177 GFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARF-LVWVYES  253 (528)
T ss_pred             hccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHH-HhhcccC
Confidence            999999 799999999999999998887666 9999999999999999999999999988888655555444 5567898


Q ss_pred             CCCCCCCChhHHH--H------------------------HHcC------CCcccccCCCccHHHhhcC---CchHHHHH
Q 016338          163 PCNSPFVSKSELR--L------------------------IQAG------KSDSVKKRNPPSLRHLLSK---LPSWTVII  207 (391)
Q Consensus       163 ~~~~~~~~~~~~~--~------------------------~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~  207 (391)
                      |+-.-...++++.  .                        .+++      ...+..++...+..+++..   ++......
T Consensus       254 pRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~  333 (528)
T KOG0253|consen  254 PRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWR  333 (528)
T ss_pred             cchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHH
Confidence            8732111110000  0                        0000      0000112223344444432   23344455


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhhh-------------------CCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 016338          208 ANITNNWGYFVLLSWMPIYFNTVF-------------------NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGY  268 (391)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  268 (391)
                      .++...+.+++..-......+.+.                   ..+...--.=..+.......|.++.+++.||+|    
T Consensus       334 iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlG----  409 (528)
T KOG0253|consen  334 IWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLG----  409 (528)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhc----
Confidence            566666666666555554444321                   011111111233456778899999999999999    


Q ss_pred             chhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHH
Q 016338          269 SLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAI  347 (391)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~  347 (391)
                           ||..+..+++.++++.+.+....+......+.+..-.+....+...+.+..|++| ..|+++.|....+.++|++
T Consensus       410 -----RKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI  484 (528)
T KOG0253|consen  410 -----RKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGI  484 (528)
T ss_pred             -----chhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhh
Confidence                 6688888999999988888777777666677777777777788889999999999 8999999999999999999


Q ss_pred             HHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccC
Q 016338          348 ISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTG  387 (391)
Q Consensus       348 i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (391)
                      +.|.+. ...+. . ...+..+.+.+++++.+...+++.+
T Consensus       485 ~~p~iA-~~~e~-s-~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  485 FSPVIA-MRAEL-S-TSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             hhhHHH-HHhcc-c-eeehHHHHHHHHHHHHHHheeeeec
Confidence            999998 44443 2 4455566666666666666655543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.96  E-value=5.8e-26  Score=202.91  Aligned_cols=367  Identities=14%  Similarity=0.062  Sum_probs=259.7

Q ss_pred             ccchhhHHHHhCCChhh-HHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSF-LGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~   80 (391)
                      +.+.|.+.+|+|+|++| .|.+.++++.+|++++++.|.++||+|.|+++.++.+.+++..++.+++  +++..+.+.|+
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--~Sl~~L~i~R~  123 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--TSVWHMQLMEV  123 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            45778999999999999 9999999999999999999999999999999999999999999999665  89999999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHH--HHHHHHHHHHHhhc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILF--SSLGLLWLSTWTSK  158 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~--~~~~~~~~~~~~~~  158 (391)
                      +.|++.|... ....++.+|+|+++|+++.++..++..+|.+++++++++ ...+|||+-+.+.  +..+....+++-++
T Consensus       124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998 999999999999999999999999999999999999999 5578999854442  23333444455556


Q ss_pred             cccCCCCCCCCChh-----HHHHHHcCCCccc--c----c--------CCCccHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 016338          159 VTNDPCNSPFVSKS-----ELRLIQAGKSDSV--K----K--------RNPPSLRHLLSKLPSWTVIIANITNNWGYFVL  219 (391)
Q Consensus       159 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (391)
                      +|..++..-.++++     ...+.++..+++.  +    +        .-..++++..+||.+....+-+.+...+++-+
T Consensus       202 LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv  281 (511)
T TIGR00806       202 LKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLI  281 (511)
T ss_pred             CCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHH
Confidence            66443321000000     0000000000000  0    0        01124456678899998888888888888888


Q ss_pred             HHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchh
Q 016338          220 LSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA  299 (391)
Q Consensus       220 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (391)
                      .+|.-...++..+-...-.|..-++..+.+++..+..|++-.+..+.       ....+.+..++.+..++++...++.+
T Consensus       282 ~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~~t~~Iw  354 (511)
T TIGR00806       282 TYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMSQSHDIW  354 (511)
T ss_pred             HHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhhcccchH
Confidence            88887777664332222455666666777888888888886555432       34555666666666677888888888


Q ss_pred             HHHHHHHHHHHhhhhcccchhhhhh-hccccchhHHHHHHHHHHHHHHHHHHHHh----hHhhc---cccchhHHHHHHH
Q 016338          300 VAAVLITIALSLSSFSQAGYLLNIQ-EIAPDCAGFLHGIANSAGTLAAIISTIGT----GYFVQ---WLGSFQAFLTVTA  371 (391)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~~~----g~l~~---~~g~~~~~~~~~~  371 (391)
                      ...+..++......+..+.....+. ++..+..|...|+++.+..+-..+-..+.    |.=.|   .+--|...|.+.+
T Consensus       355 ~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~gl~l~i~~Qf~vY~~yf~~~~  434 (511)
T TIGR00806       355 VLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRGLGLQVRKQFRIYSVYFLVLS  434 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEcccccCCCceeEEEehhhHHHHHH
Confidence            8877776666665555555444444 44446779999998888777666655444    22112   1212445566666


Q ss_pred             HHHHHHHH
Q 016338          372 GLYFVTTI  379 (391)
Q Consensus       372 ~~~~~~~~  379 (391)
                      .+.++..+
T Consensus       435 ~i~~~~~~  442 (511)
T TIGR00806       435 IICFFGAG  442 (511)
T ss_pred             HHHHHHHH
Confidence            55555544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=9.5e-26  Score=213.53  Aligned_cols=348  Identities=17%  Similarity=0.144  Sum_probs=244.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHHHH
Q 016338           17 SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTL   96 (391)
Q Consensus        17 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~~~   96 (391)
                      ++.+|+.+...++..+++++.|+++|++|||+.+.++.+.+.++.+++++  ++|+++++++|+++|+|.|......+.+
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~--a~~~~~l~~GR~l~G~g~G~~~~~~piy  166 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL--APSWYQLIVGRILTGLGVGGASVLAPVY  166 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHhccchhhhhhcchhh
Confidence            35599999999999999999999999999999999999999999999954  4999999999999999999999999999


Q ss_pred             hhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh-cCchhHHHHHHHHHHHHHHHHhhccccCCCCCCCCChh-HH
Q 016338           97 TSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKS-EL  174 (391)
Q Consensus        97 i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  174 (391)
                      ++|..|++.||...+..+....+|..++..++....+. .+||..+.+..+.+++..+. ..+.||+|+..-+..+. +.
T Consensus       167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a  245 (513)
T KOG0254|consen  167 ISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEA  245 (513)
T ss_pred             HhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHH
Confidence            99999999999999999999999999996555544332 48999999988888888777 77889998743221111 10


Q ss_pred             -HH---HHc-CCCc---------------ccccCCCccHHHhhc----CCchHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 016338          175 -RL---IQA-GKSD---------------SVKKRNPPSLRHLLS----KLPSWTVIIANITNNWGYFVLLSWMPIYFNTV  230 (391)
Q Consensus       175 -~~---~~~-~~~~---------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (391)
                       +.   ... ..++               .........++++++    ++.+....+..+.+..+......|.+.++++ 
T Consensus       246 ~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-  324 (513)
T KOG0254|consen  246 KRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-  324 (513)
T ss_pred             HHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-
Confidence             00   000 0000               000011112344443    2223344455555555556666788888777 


Q ss_pred             hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcC----C--------ch
Q 016338          231 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA----K--------SP  298 (391)
Q Consensus       231 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------~~  298 (391)
                      .|.+... .......++...++..+..++.||+|         ||..+..+...+.++..++...    .        ..
T Consensus       325 ~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~g---------Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
T KOG0254|consen  325 AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFG---------RRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAG  394 (513)
T ss_pred             cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhc---------cHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchh
Confidence            4665433 44555667778888888899999998         5566677777777766655421    0        11


Q ss_pred             hHHHH-HHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHH
Q 016338          299 AVAAV-LITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFV  376 (391)
Q Consensus       299 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~  376 (391)
                      +..+. ..+....+.....+..+.+..|.+| +.|+++.++..........+-......+.+..+ ....|........+
T Consensus       395 ~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~-~~~~f~~f~~~~~~  473 (513)
T KOG0254|consen  395 WLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG-IGGTFGYFGGICLL  473 (513)
T ss_pred             HHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHH
Confidence            22222 2333333344445556678899999 899999999999999988877777777766644 23444444444444


Q ss_pred             HHH
Q 016338          377 TTI  379 (391)
Q Consensus       377 ~~~  379 (391)
                      ...
T Consensus       474 ~~~  476 (513)
T KOG0254|consen  474 SLI  476 (513)
T ss_pred             HHH
Confidence            444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.95  E-value=5.4e-25  Score=204.56  Aligned_cols=344  Identities=14%  Similarity=0.122  Sum_probs=243.8

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~   82 (391)
                      ..++.+.+|+|- .....|+.+.+.++.+++.++.|+++|.+|||..++.+.++..+|.+++  +.++|...++.+..+.
T Consensus        65 ~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~--atA~~~~~~iag~~l~  141 (599)
T PF06609_consen   65 SILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVC--ATAQNMNTFIAGMVLY  141 (599)
T ss_pred             HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHh--hcCCcHHHHHHHHHHH
Confidence            456889999985 4788999999999999999999999999999999999999999999999  5569999999999999


Q ss_pred             HhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccC
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~  162 (391)
                      |+|.|... .....++|..|.|.|+...++.....-.....++.++..+..+.+|||.|++..++..+.++..+++..++
T Consensus       142 GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP  220 (599)
T PF06609_consen  142 GVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPP  220 (599)
T ss_pred             HHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99987764 45666899999999998888777666666667777877777677999999999888776555544433322


Q ss_pred             CCC--CCCC-C-hhHHHHHH--------------------cCC-Ccc-----------------------c---ccCCCc
Q 016338          163 PCN--SPFV-S-KSELRLIQ--------------------AGK-SDS-----------------------V---KKRNPP  191 (391)
Q Consensus       163 ~~~--~~~~-~-~~~~~~~~--------------------~~~-~~~-----------------------~---~~~~~~  191 (391)
                      +++  +.++ + +++.++.+                    ... ..+                       |   ..+.+.
T Consensus       221 ~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl  300 (599)
T PF06609_consen  221 PRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPL  300 (599)
T ss_pred             chhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCc
Confidence            221  1111 1 11111111                    000 000                       1   111222


Q ss_pred             cHHHhhcCC-chHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcc---hhhHHhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 016338          192 SLRHLLSKL-PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK---QAAWFSAVPWGTMAVSGYMAGKASDSLIKAG  267 (391)
Q Consensus       192 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  267 (391)
                      -..+++|++ .+....+..++....++....+.|+.....++-++.   ..++.....+.+..++.++.|.+..++++  
T Consensus       301 ~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~--  378 (599)
T PF06609_consen  301 FPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRH--  378 (599)
T ss_pred             CCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccc--
Confidence            345788874 566666777788888888889999988887777653   56777788888888999999999988875  


Q ss_pred             cchhHHHHHHHHHHhHhhHHHHHHhh--cCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHH
Q 016338          268 YSLTLVRKIMQSIGFIGPGVSLLCLN--YAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTL  344 (391)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~  344 (391)
                            .|..+.++.+.+..+.-++.  ..++....+...++.....+..........+...| ++-+++.|+..+++.+
T Consensus       379 ------~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~  452 (599)
T PF06609_consen  379 ------IKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSI  452 (599)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHH
Confidence                  44555555555554333332  22333333344444444444333344444455555 8999999999999999


Q ss_pred             HHHHHHHHhhHhhc
Q 016338          345 AAIISTIGTGYFVQ  358 (391)
Q Consensus       345 g~~i~~~~~g~l~~  358 (391)
                      |+.++..+...+..
T Consensus       453 GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  453 GGSIGYAIYNAIFT  466 (599)
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999998877654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.95  E-value=5.8e-24  Score=192.87  Aligned_cols=361  Identities=18%  Similarity=0.167  Sum_probs=261.9

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcC-chHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYG-GKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      |.+|..-++.|.|.+|+|.+.+...+...++++++|.++||++ +||.+.+..++.++.....  ...++++.++..-++
T Consensus        23 p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~--~~~~~f~~~~~~~~l  100 (400)
T PF03825_consen   23 PYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL--AFSSSFWWLFVIMLL  100 (400)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHH
Confidence            4566778888999999999999999999999999999999986 5677777777776665555  445889888888888


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhH-HHHHHhhcCc---hhHHHHHHHHHHHHHHHHhh
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLL-TPIMLSTIGI---SGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~-~~~l~~~~gw---r~~f~~~~~~~~~~~~~~~~  157 (391)
                      ..+......|...++..+...  ++++-.|-.....++|..++... +..+.+..++   ...+++.+..+++...... 
T Consensus       101 ~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l-  177 (400)
T PF03825_consen  101 FSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFAL-  177 (400)
T ss_pred             HHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH-
Confidence            888888888888898888874  55666777788888888887654 2333333332   3456666655554444333 


Q ss_pred             ccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcch
Q 016338          158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ  237 (391)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  237 (391)
                      .+|+.|.+++.+++.             ++....+..+++|||++....+..++.........++.+.|+++..|.+...
T Consensus       178 ~lp~~~~~~~~~~~~-------------~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~  244 (400)
T PF03825_consen  178 FLPKTPPKRSAKESV-------------KKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST  244 (400)
T ss_pred             hCCCCccccccCCCc-------------ccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH
Confidence            346655222111110             1112224468999999999999999999999999999999999954478788


Q ss_pred             hhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcC-CchhHHHHHHHH----HHHhh
Q 016338          238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-KSPAVAAVLITI----ALSLS  312 (391)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~  312 (391)
                      .+.+.++..+..++.-...+++.+|+|         .+.++.++.+..++-..++... ++.+.......+    -+...
T Consensus       245 ~g~~~~l~~~aEi~~f~~~~~~~~r~g---------~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf  315 (400)
T PF03825_consen  245 IGILWALGVVAEIPFFFFSGRFLKRFG---------IKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTF  315 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHH
Confidence            888888877888888889999999998         4567778888888888777766 444433333332    23333


Q ss_pred             hhcccchhhhhhhccc-cchhHHHHHHHHHH-HHHHHHHHHHhhHhhccccc-----hhHHHHHHHHHHHHHHHHHHHhc
Q 016338          313 SFSQAGYLLNIQEIAP-DCAGFLHGIANSAG-TLAAIISTIGTGYFVQWLGS-----FQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       313 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~-~~g~~i~~~~~g~l~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      +........++++..| +.|++++++++... .+|..+|..++|++.|+.|.     +...+.+.+++.++..+++.+..
T Consensus       316 ~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~f  395 (400)
T PF03825_consen  316 GLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILF  395 (400)
T ss_pred             HHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4455666677777666 89999999988864 68999999999999998772     33456666666666666777666


Q ss_pred             cCccc
Q 016338          386 TGERV  390 (391)
Q Consensus       386 ~~~~~  390 (391)
                      |++++
T Consensus       396 k~~~~  400 (400)
T PF03825_consen  396 KPKHN  400 (400)
T ss_pred             cCCCC
Confidence            66653

>PTZ00207 hypothetical protein; Provisional

Probab=99.95  E-value=1.1e-24  Score=203.75  Aligned_cols=384  Identities=14%  Similarity=0.065  Sum_probs=277.5

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhc----cchHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT----HSTASLLA   77 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~----~~~~~~~~   77 (391)
                      +...|++++++|+|.+|++++.++. ......+++.|++.||+|||+++.++.+++.++.++++++..    ++++.+++
T Consensus        47 sv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l  125 (591)
T PTZ00207         47 NLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV  125 (591)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            4567889999999999999999874 445677889999999999999999999999999999966422    68999999


Q ss_pred             HHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhh
Q 016338           78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  157 (391)
                      .|++.|+|.+...+.....+.+|+| ++||++.|+.....++|.++.+.+...+.+ .+|+..|++.+++.++..++.+.
T Consensus       126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~  203 (591)
T PTZ00207        126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIV  203 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999998999999999996 889999999999999999864444443333 46888999999998887777777


Q ss_pred             ccccCCCCCC-----CCChhHHH--------------------------------------------------------H
Q 016338          158 KVTNDPCNSP-----FVSKSELR--------------------------------------------------------L  176 (391)
Q Consensus       158 ~~~~~~~~~~-----~~~~~~~~--------------------------------------------------------~  176 (391)
                      +.+++|....     +.+++++.                                                        .
T Consensus       204 ~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~  283 (591)
T PTZ00207        204 FMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTV  283 (591)
T ss_pred             heeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            7666543211     01111111                                                        0


Q ss_pred             H------H--------------cCCCc----------------cc-------c---cCCCccHHHhhcCCchHHHHHHHH
Q 016338          177 I------Q--------------AGKSD----------------SV-------K---KRNPPSLRHLLSKLPSWTVIIANI  210 (391)
Q Consensus       177 ~------~--------------~~~~~----------------~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~  210 (391)
                      .      .              ++.++                +.       +   .+...++++.+++..+|.+.+.++
T Consensus       284 ~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~  363 (591)
T PTZ00207        284 IVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIF  363 (591)
T ss_pred             HHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHH
Confidence            0      0              00000                00       0   000125677788889999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHhhhCCCcch--hhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHH
Q 016338          211 TNNWGYFVLLSWMPIYFNTVFNVNLKQ--AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS  288 (391)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (391)
                      +.........+-+.+..+..-|.+.+.  ...+.+..++.+.+|++..|.+.....+|+..+...|...+.+..+ +.+.
T Consensus       364 cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~  442 (591)
T PTZ00207        364 CCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIIT  442 (591)
T ss_pred             HhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHH
Confidence            988888888888888888832763333  3337788899999999999999855544432211224444445554 4444


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHH-HHHhhHhhcccc------
Q 016338          289 LLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIIS-TIGTGYFVQWLG------  361 (391)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~-~~~~g~l~~~~g------  361 (391)
                      .+++...-....+.+..++.+...+..++......+|++.++-|+-+-+.....-+|..+- -.+.|.++|+-.      
T Consensus       443 ~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~  522 (591)
T PTZ00207        443 MLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQD  522 (591)
T ss_pred             HHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            4444333232455666667777778888888899999888999998888888888888776 578888987522      


Q ss_pred             ------chhHHHHHHHHHHHHHHHHHHHhccCcc
Q 016338          362 ------SFQAFLTVTAGLYFVTTIFWNLYSTGER  389 (391)
Q Consensus       362 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (391)
                            -+...|.+.++.++.+.+....+..|.|
T Consensus       523 ~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r  556 (591)
T PTZ00207        523 VCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR  556 (591)
T ss_pred             eeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence                  2677888888888888887666554433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=1.9e-24  Score=205.69  Aligned_cols=330  Identities=15%  Similarity=0.104  Sum_probs=240.1

Q ss_pred             HHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhch
Q 016338           10 AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVA   89 (391)
Q Consensus        10 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~   89 (391)
                      ++++.+.....+..+++.+|..+|++++|+++||+|||+++++++++..++.++.  ++++|++.+++.|++.|++.+..
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~--a~a~~~~~~~~~Rfl~G~~~~~~  188 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILT--AFAPNYWMFLIFRFLSGFFGSGP  188 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHH--HHhCcHHHHHHHHHHHHhhccch
Confidence            4556678889999999999999999999999999999999999999999999999  55599999999999999999999


Q ss_pred             hhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 016338           90 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV  169 (391)
Q Consensus        90 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (391)
                      ......++.|++++|+|+.+..+ ......+..+++..++++.+  +||+.+++..++..+..+. ++..||+|+.....
T Consensus       189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~  264 (521)
T KOG0255|consen  189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSK  264 (521)
T ss_pred             hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHc
Confidence            99999999999999999999999 77777788888888888877  8999999999998877666 66667888753322


Q ss_pred             ChhH--HHHHHc-------CCCc--------------ccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHH
Q 016338          170 SKSE--LRLIQA-------GKSD--------------SVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIY  226 (391)
Q Consensus       170 ~~~~--~~~~~~-------~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (391)
                      .+.+  .+..++       ....              ....+++..+.++++.|++....+......+.......-++..
T Consensus       265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~  344 (521)
T KOG0255|consen  265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLN  344 (521)
T ss_pred             CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhh
Confidence            2111  010000       0000              0011122456777887765555444444443333222222222


Q ss_pred             HHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchh---HHHH
Q 016338          227 FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA---VAAV  303 (391)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  303 (391)
                      ... +|.+.   .......+..........+...||.|         |+.....+.....++.+.........   ...+
T Consensus       345 ~~~-lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~g---------R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (521)
T KOG0255|consen  345 VSG-LGGNI---YLNFTLSGLVELPAYFRNGLLLPEFG---------RRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWI  411 (521)
T ss_pred             hhh-cCchH---HHHHHHHHHHHhhHHHHHHHHHHHhC---------cHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            222 34433   22333334466677777789999997         55666677777777766665544322   4566


Q ss_pred             HHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 016338          304 LITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  358 (391)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~  358 (391)
                      ...++.+.........+.+..|..| ..|+.+.+..+....++++++|.+.-....
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  412 LPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6666666666666667888999999 799999999999999999999998866555

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.94  E-value=6e-23  Score=188.45  Aligned_cols=370  Identities=14%  Similarity=0.132  Sum_probs=249.3

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhh----hcCchHHHHHH-HHHHHHHHhhhhhhhccchH----
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVD----KYGGKKVLAWG-VALWSLSTLLTPWAATHSTA----   73 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~~~~~~a~~~~~~----   73 (391)
                      +.++.+.+++|.+..+.+++..+..+...+.+|+.|.++|    |+||||.++++ .....++..+.+++  ++..    
T Consensus        25 ~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~--~~~~~~~~  102 (477)
T TIGR01301        25 SLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA--ADIGHLFG  102 (477)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC--chhhhhcc
Confidence            3456678899999999999999999999999999999999    59999988775 55556666666443  4432    


Q ss_pred             -------------HHHHHHHHHHhhhhchhhhHHHHhhhhcCccch--hhHHHHHHhhhhhhHHHHhhHHHHH--Hhhc-
Q 016338           74 -------------SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHER--ASAIGICMGGFHLGNVVGLLLTPIM--LSTI-  135 (391)
Q Consensus        74 -------------~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r--g~~~~~~~~~~~lg~~~g~~~~~~l--~~~~-  135 (391)
                                   .++++-.+..++.....+...++++|..|+++|  +.+.++.+...++|..+|+.++++.  .+.+ 
T Consensus       103 ~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~  182 (477)
T TIGR01301       103 DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFP  182 (477)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence                         223333444557777888899999999998765  6899999999999999999999875  2222 


Q ss_pred             ------------CchhHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcC----
Q 016338          136 ------------GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSK----  199 (391)
Q Consensus       136 ------------gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  199 (391)
                                  +.|..|++.++..++..+...+..+|.|..+++..+++      +.+++++++....+++++++    
T Consensus       183 ~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~m  256 (477)
T TIGR01301       183 FTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS------EAAPPSKHGEEAFFGELFGAFKYL  256 (477)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh------hcccccccchhhhHHHHHHHHHHC
Confidence                        56889999888888888888888888764322111100      00011111111233444332    


Q ss_pred             -CchHHHHHHHHHHHHHHHHHHHhhHHHHHh-hhCCCcc------hh---h-HHhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 016338          200 -LPSWTVIIANITNNWGYFVLLSWMPIYFNT-VFNVNLK------QA---A-WFSAVPWGTMAVSGYMAGKASDSLIKAG  267 (391)
Q Consensus       200 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~------~~---~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  267 (391)
                       |..+.+++..++.+++++.+..|.+.|..+ .++.++.      +.   | +-.....+...+.+++..++.+|+|+| 
T Consensus       257 P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~-  335 (477)
T TIGR01301       257 PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG-  335 (477)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence             578899999999999999999999999874 4554321      11   2 223344445556666777778887742 


Q ss_pred             cchhHHHHHHHHHHhHhhHHHHHHhhcCCc---------------------hhHHHHHHHHHHHhhhhcccchhhhhhhc
Q 016338          268 YSLTLVRKIMQSIGFIGPGVSLLCLNYAKS---------------------PAVAAVLITIALSLSSFSQAGYLLNIQEI  326 (391)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (391)
                             |.....+.++.++++....+.++                     .+.....+...+..........++.+.+.
T Consensus       336 -------k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~  408 (477)
T TIGR01301       336 -------KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIR  408 (477)
T ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence                   23333443344433333321110                     13333334444444455556666776665


Q ss_pred             cc---cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc-chhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          327 AP---DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG-SFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       327 ~~---~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      .+   +..|..+|+.|.+..+.+.+.....|.+.+..| +....+.+.++..+++.++.+..-++.
T Consensus       409 ~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~  474 (477)
T TIGR01301       409 SSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP  474 (477)
T ss_pred             ccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence            55   456999999999999999999999999777666 456678888888888877766554443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.93  E-value=2.8e-22  Score=185.23  Aligned_cols=357  Identities=17%  Similarity=0.090  Sum_probs=270.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHH-HHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHHH
Q 016338           17 SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAW-GVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMST   95 (391)
Q Consensus        17 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~~   95 (391)
                      +..++..++..+..++..|+.|.++|+-|+||.++. ...+..+.+.+..+...++++...+.-++.-++.+......++
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999988765544 4455555666664443345555566666667788888889999


Q ss_pred             HhhhhcCccch--------------------------hhHHHHHHhhhhhhHHHHhhHHHHHHhh--------cCchhHH
Q 016338           96 LTSRWFPSHER--------------------------ASAIGICMGGFHLGNVVGLLLTPIMLST--------IGISGPF  141 (391)
Q Consensus        96 ~i~~~~~~~~r--------------------------g~~~~~~~~~~~lg~~~g~~~~~~l~~~--------~gwr~~f  141 (391)
                      ++.|..+++++                          ++..+.-.....+|..+.-.+.-.+...        .+-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999998888                          8998888888888888877766554321        2358889


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCCCChhHH-HHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHH
Q 016338          142 ILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSEL-RLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL  220 (391)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (391)
                      .+.++.-++..+..+++.||.|+.++..+..+. ..        .-++..+.++++.|+|......+.+++..-+...+.
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~--------g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~  301 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRF--------GFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTII  301 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHH--------HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            999999889899999999988763222111110 00        001122356777788999999999999999999999


Q ss_pred             HhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhh-HHHHHHhh------
Q 016338          221 SWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP-GVSLLCLN------  293 (391)
Q Consensus       221 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------  293 (391)
                      .....|.++++|++..+...+.....+.+++|.++.|++.||+|.|       ++..+..+.... .+....+.      
T Consensus       302 ~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k-------~~~~l~~~l~~~~~i~~~g~~G~~~~~  374 (477)
T PF11700_consen  302 SFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK-------TKRTLLISLILWIIIPLYGLFGFWPSF  374 (477)
T ss_pred             HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------hhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999999999999976       334444443333 22222221      


Q ss_pred             -cCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHH
Q 016338          294 -YAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTA  371 (391)
Q Consensus       294 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~  371 (391)
                       ..++.+..+++.++.+.+.+...+..-++..++.| ++.+..+|+++......+.+||.+.|.+.|..|+.+..+....
T Consensus       375 ~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~  454 (477)
T PF11700_consen  375 FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLL  454 (477)
T ss_pred             cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence             13455566666666666666666666666677666 7889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCc
Q 016338          372 GLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       372 ~~~~~~~~~~~~~~~~~  388 (391)
                      ++.+++.++....+.++
T Consensus       455 ~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  455 VLFLIGLILLFFVDVEK  471 (477)
T ss_pred             HHHHHHHHHHhhccchh
Confidence            99999998887766544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.93  E-value=4.2e-25  Score=192.86  Aligned_cols=361  Identities=19%  Similarity=0.209  Sum_probs=258.0

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhcc-----chHHHHHHHHHHHhhhhc
Q 016338           14 WSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH-----STASLLAVRAFFGLAEGV   88 (391)
Q Consensus        14 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~-----~~~~~~~~r~l~G~g~~~   88 (391)
                      .++...+.+..+..+|..+||++.|++.||+|||+++...+++..++++++++...+     -++++.+.|++.|+|.|+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG  160 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG  160 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence            345667899999999999999999999999999999999999999999987554322     257889999999999999


Q ss_pred             hhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh---------------cCchhHHHHHHHHHHHHHH
Q 016338           89 AMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST---------------IGISGPFILFSSLGLLWLS  153 (391)
Q Consensus        89 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~---------------~gwr~~f~~~~~~~~~~~~  153 (391)
                      -+|.+.+..+|...+++||...+...+..+.|...|.+++-.+..-               .=||..+.+.+++++....
T Consensus       161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly  240 (538)
T KOG0252|consen  161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY  240 (538)
T ss_pred             CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988887665431               1299999997777766544


Q ss_pred             HHhhccccCCCCCCCCChh-------HHHHHHc-----CCCcccccCCC---ccHHHhhcC---CchHHHHHHHHHHHHH
Q 016338          154 TWTSKVTNDPCNSPFVSKS-------ELRLIQA-----GKSDSVKKRNP---PSLRHLLSK---LPSWTVIIANITNNWG  215 (391)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~  215 (391)
                      . ....||+++-+...+++       .++..+.     +..++..+.+.   ..+...+..   +.....+..++..-.+
T Consensus       241 ~-Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDia  319 (538)
T KOG0252|consen  241 F-RLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIA  319 (538)
T ss_pred             h-hhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3 44567765422100000       0000000     00000111111   112222222   4455667778888888


Q ss_pred             HHHHHHhhHHHHHhhhCCCcchhhH--------HhhhHH-HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhH
Q 016338          216 YFVLLSWMPIYFNTVFNVNLKQAAW--------FSAVPW-GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPG  286 (391)
Q Consensus       216 ~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  286 (391)
                      ++....+....++. .|+.+.+..+        ...+.. ...++|-.+...++|++|         |+++.+.++.++.
T Consensus       320 fy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iG---------Rk~iq~~GF~~~~  389 (538)
T KOG0252|consen  320 FYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIG---------RKYIQLMGFFIMT  389 (538)
T ss_pred             hhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhh---------hHHHHHhhHHHHH
Confidence            88888888888876 5665544433        111111 122235556667899999         6788888999999


Q ss_pred             HHHHHhhcCCc----hhHHHHHHHHHHHhhhhc-ccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhc--
Q 016338          287 VSLLCLNYAKS----PAVAAVLITIALSLSSFS-QAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ--  358 (391)
Q Consensus       287 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~--  358 (391)
                      +..+.+....+    .....++..+..++..+. ......+..|.+| +.|++..|+....+-.|++++.....++.+  
T Consensus       390 i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~  469 (538)
T KOG0252|consen  390 IFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN  469 (538)
T ss_pred             HHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc
Confidence            88888776544    233334444444444433 4446677889999 899999999999999999999999999999  


Q ss_pred             ---cccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          359 ---WLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       359 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                         ..| ....+++.+.+..++.+..+++..
T Consensus       470 yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pE  499 (538)
T KOG0252|consen  470 YPPNIG-VRNVFIILAGCMLLGILFTLLIPE  499 (538)
T ss_pred             CCcccc-chHHHHHHHHHHHHhHheeEEeec
Confidence               666 889999999999999988877763

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.93  E-value=3.2e-23  Score=194.98  Aligned_cols=371  Identities=17%  Similarity=0.141  Sum_probs=226.1

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhh-cCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHH
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G   83 (391)
                      .+.+++++|.|.++.+++.+.+........+++|+++|| +|||+.+.++.++..++..+++++ .++.+.+.++|+++|
T Consensus        45 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~-~~~~~~l~~~~~l~g  123 (500)
T PRK09584         45 AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS-GHDAGIVYMGMATIA  123 (500)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Confidence            345678999999999999988887767777899999999 599999999999999998888543 235667778999999


Q ss_pred             hhhhchhhhHHHHhhhhcCccc--hhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHH---HHHhhc
Q 016338           84 LAEGVAMPAMSTLTSRWFPSHE--RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWL---STWTSK  158 (391)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~--rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~---~~~~~~  158 (391)
                      +|.|...+...+++.|++|+++  |+.++++++.+.++|..+||.+++++.++.|||+.|.+.++..++..   +.....
T Consensus       124 ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~  203 (500)
T PRK09584        124 VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRW  203 (500)
T ss_pred             HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            9999988999999999998653  45688999999999999999999999999999999999775444432   222333


Q ss_pred             cccCCCCCCCCChhHHHHH---------------HcCCCccccc--------------CCCccHHHhhcCCchHHHHHHH
Q 016338          159 VTNDPCNSPFVSKSELRLI---------------QAGKSDSVKK--------------RNPPSLRHLLSKLPSWTVIIAN  209 (391)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~  209 (391)
                      .+|.+++.+..+.+.....               .....+..++              ......++..|+ +.+.. +..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~  281 (500)
T PRK09584        204 VKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAARR-KMIVA-FIL  281 (500)
T ss_pred             hccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH-HHHHH-HHH
Confidence            3333211111000000000               0000000000              000000111122 22222 222


Q ss_pred             HHHHHHHHHHHHhhHHHHHh--hhCCCc------chhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 016338          210 ITNNWGYFVLLSWMPIYFNT--VFNVNL------KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  281 (391)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~--~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  281 (391)
                      +.....++......|.++..  ..+.+.      ...+.+.+...+..++..++..++-+|.++|..     ....+.++
T Consensus       282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~-----~~~~~~~G  356 (500)
T PRK09584        282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLP-----MPHKFAIG  356 (500)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCC-----cHHHHHHH
Confidence            23344444555555555443  111221      225566666776777777777676666655421     22334456


Q ss_pred             hHhhHHHHHHhhcCC---------chhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHH
Q 016338          282 FIGPGVSLLCLNYAK---------SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTI  351 (391)
Q Consensus       282 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~  351 (391)
                      +++.+++...+....         +.++......+.........|.......+..| +.||+++|.......+|..++..
T Consensus       357 ~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~  436 (500)
T PRK09584        357 MVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGY  436 (500)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666655543221         13344444555555566667777777777766 89999999777666666666655


Q ss_pred             HhhHhhc---------cccchhHHHHHHHHHHHHHHHHHHH
Q 016338          352 GTGYFVQ---------WLGSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       352 ~~g~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      +.+....         ..+.+...|...++..++..++.+.
T Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        437 VANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5542211         1122667777777665544443333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.93  E-value=2.6e-23  Score=185.14  Aligned_cols=363  Identities=15%  Similarity=0.126  Sum_probs=245.0

Q ss_pred             chhhHH-HHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHH--HHHH-hhhhhh--hccchH-HHH
Q 016338            4 AVVPLA-AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALW--SLST-LLTPWA--ATHSTA-SLL   76 (391)
Q Consensus         4 ~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~--~~~~-~~~~~a--~~~~~~-~~~   76 (391)
                      ..|... ++.|+|.+|+|.+.++..+...+.+|+.|.++||.|.||-++......  ..+. +...+.  ...|++ ..+
T Consensus        29 F~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~i  108 (412)
T PF01306_consen   29 FFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAI  108 (412)
T ss_dssp             HHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHH
T ss_pred             HHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444 458999999999999999999999999999999999777655443322  1122 221111  112322 223


Q ss_pred             HHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHh
Q 016338           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  156 (391)
                      ++-+..|+......|..-+++.++.  ++.+.-.|-.....++|.+++..++|.+.+. +-+..|++....+++..++..
T Consensus       109 ig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~  185 (412)
T PF01306_consen  109 IGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLL  185 (412)
T ss_dssp             HTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHH
Confidence            3333344444445566666665554  5567778888999999999999999998863 446678877766666666656


Q ss_pred             hccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhh---CC
Q 016338          157 SKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVF---NV  233 (391)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~  233 (391)
                      ...|+.+++.+..+.++         +++++.+.++..+++|+|++|.+.+........+..+....|.|.++.+   +.
T Consensus       186 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~  256 (412)
T PF01306_consen  186 LLKPDVPPQAEVADALG---------AKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQ  256 (412)
T ss_dssp             SS---SSSSS-SSTTSS---------S------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred             HcCCcCchhhhhhcccc---------cCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            66555444322111110         0011112235678999999999999888888888888888888887633   23


Q ss_pred             CcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhh
Q 016338          234 NLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSS  313 (391)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (391)
                      +.+..|++.+.-.+..++...+.+++.+|+|.         |..+.++..++.+-....+..++++.....-.+-..-..
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~---------k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~  327 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGA---------KNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFP  327 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcCh---------HhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            44567888888888899999999999999994         466667777888888888888998887777666666666


Q ss_pred             hcccchhhhhhhccc-cchhHHHHHH-HHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          314 FSQAGYLLNIQEIAP-DCAGFLHGIA-NSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       314 ~~~~~~~~~~~~~~~-~~~~~~~g~~-~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      .......-+.++..| +..++...+. +...+++..+.+.+.|.++|+.| ++..+++.+.+.+...++..+.-+++
T Consensus       328 l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  328 LLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCC
Confidence            667777778888777 6778888885 67788999999999999999999 88777777776666555554444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.93  E-value=2.2e-23  Score=183.99  Aligned_cols=278  Identities=11%  Similarity=0.056  Sum_probs=205.2

Q ss_pred             ccchHHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh--------------
Q 016338           69 THSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--------------  134 (391)
Q Consensus        69 ~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~--------------  134 (391)
                      .++|+.++++-++.|.|.+...+..+.++++..|+|++.+.+++.+...++|..++|.+++.+...              
T Consensus         7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~   86 (310)
T TIGR01272         7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANA   86 (310)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhH
Confidence            488999999999999999999999999999999999999999999999999999999999987731              


Q ss_pred             --cCchhHHHHHHHHHHHHHHHHhhc-cccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHH
Q 016338          135 --IGISGPFILFSSLGLLWLSTWTSK-VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANIT  211 (391)
Q Consensus       135 --~gwr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (391)
                        .+|+++|++.+.+..+..+...+. .||.++++   ++++    +      ++  +..+.++.+|+|.++...+..++
T Consensus        87 ~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~---~~~~----~------~~--~~~~~~~~~~~~~~~l~~~~~f~  151 (310)
T TIGR01272        87 EAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEAD---VARV----S------SG--DTTQKTSAFQFTHLVLGALGIFV  151 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccc---cccc----c------cc--cccchhhHHhhHHHHHHHHHHHH
Confidence              479999997777655554443332 23321111   0000    0      00  00122356788899988888888


Q ss_pred             HHHHHHHHHHhhHHHHHhh--hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHH
Q 016338          212 NNWGYFVLLSWMPIYFNTV--FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSL  289 (391)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (391)
                      +...+.+...|.+.|+++.  +|+++++++...+....+.++|+++.+++.||+++|       |  .+..+..+..+..
T Consensus       152 yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~-------~--~l~~~~~l~~~~~  222 (310)
T TIGR01272       152 YVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG-------R--YLAFNAFLAVLLS  222 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-------H--HHHHHHHHHHHHH
Confidence            8889999999999999864  689999999999999999999999999999999964       2  2334444444444


Q ss_pred             HHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHH
Q 016338          290 LCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTV  369 (391)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~  369 (391)
                      .+....++..... ...+.+.+.+...|...+...+..|++.+++.++. ....+|+.+.|.+.|.+.|..| .+..+++
T Consensus       223 ~l~~~~~~~~~~~-~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~a~~v  299 (310)
T TIGR01272       223 IGAALTHGYVAMW-FVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQLAFAL  299 (310)
T ss_pred             HHHHHcCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chHHHHH
Confidence            3333333333222 33344455566667767777676776677777775 5778999999999999999988 7777764


Q ss_pred             HHHH
Q 016338          370 TAGL  373 (391)
Q Consensus       370 ~~~~  373 (391)
                      ...+
T Consensus       300 ~~~~  303 (310)
T TIGR01272       300 PVPC  303 (310)
T ss_pred             HHHH
Confidence            4443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09669 putative symporter YagG; Provisional

Probab=99.93  E-value=1.1e-22  Score=189.71  Aligned_cols=331  Identities=13%  Similarity=0.076  Sum_probs=222.6

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhh----cCch-HHHHHHHHHHHHHHhhhhhhh----ccchHHH
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK----YGGK-KVLAWGVALWSLSTLLTPWAA----THSTASL   75 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~a~----~~~~~~~   75 (391)
                      .+.+.+++|+|..++|.+.++..+..++..|+.|.++||    +||| +.++.+....+++..+.-...    ......+
T Consensus        33 ~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~  112 (444)
T PRK09669         33 AYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA  112 (444)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence            455778899999999999999999999999999999998    7775 556667777766665542221    1124556


Q ss_pred             HHHHHHHHhhhhchhhhHHHHhhhhc-CccchhhHHHHHHhhhhhhHHHHhhHHHHHHh-------hcCchhHHHHHHHH
Q 016338           76 LAVRAFFGLAEGVAMPAMSTLTSRWF-PSHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGISGPFILFSSL  147 (391)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~-------~~gwr~~f~~~~~~  147 (391)
                      ++..++.+.+......+..++.+|+. ++++|++..+.......+|..+++.+...+..       ..+|+..+.+.+++
T Consensus       113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii  192 (444)
T PRK09669        113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLL  192 (444)
T ss_pred             HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence            66677777777777777889999988 55889999898888888888888765544433       34688888888888


Q ss_pred             HHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHH
Q 016338          148 GLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYF  227 (391)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (391)
                      ..+..+..++..+|+++++++                ++++..+++++++|||.++......++............+.|.
T Consensus       193 ~~v~~~~~~~~~~e~~~~~~~----------------~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~  256 (444)
T PRK09669        193 GVVLFFCCFFMTKERYTPEVD----------------NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYV  256 (444)
T ss_pred             HHHHHHHHhCCeEEecCCCCc----------------CCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheee
Confidence            877766666666654322110                0111223678889999998887777766666655555444444


Q ss_pred             HhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHH-HHHHhhc-CCchhHHHHHH
Q 016338          228 NTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV-SLLCLNY-AKSPAVAAVLI  305 (391)
Q Consensus       228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~  305 (391)
                      +...+ +++..+.+.....+..+++.++.+++.||+++|       +  ....+.....+ ....... .++.+...+..
T Consensus       257 ~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (444)
T PRK09669        257 NYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRV-------R--AFKWTIVAFVILSALIFFIPPSNVWLIFALN  326 (444)
T ss_pred             eeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-------H--HHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            44333 333444455555677788889999999999865       2  22223332222 2212222 23344344444


Q ss_pred             HHHHHhhhhcccchhhhhhhccc--------cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          306 TIALSLSSFSQAGYLLNIQEIAP--------DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      ++.+...+...+...+...|..+        +..|..+|..+....+|..+++.+.|.+.|..|
T Consensus       327 ~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        327 ILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44444445555666777766543        234678899999999999999999999998776

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.93  E-value=4.7e-30  Score=240.35  Aligned_cols=354  Identities=18%  Similarity=0.170  Sum_probs=240.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhcc---chHHHHHHHHHHHhhhhchhhhH
Q 016338           17 SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH---STASLLAVRAFFGLAEGVAMPAM   93 (391)
Q Consensus        17 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~---~~~~~~~~r~l~G~g~~~~~~~~   93 (391)
                      .+.++..+...++..+|+++.|.++||+|||+.+..+.++..++.++.++  ++   |++.+.++|++.|++.|...+..
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~R~~~G~~~g~~~~~~  123 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAF--APSYNNFWMLLIGRFLIGFGIGGAYVVS  123 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            45789999999999999999999999999999999999999999999944  48   99999999999999999999999


Q ss_pred             HHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc---CchhHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 016338           94 STLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI---GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS  170 (391)
Q Consensus        94 ~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~---gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (391)
                      ..++.|..|+|+|++...+.+....+|..++..++..+.+..   +||..+.+.++++++..+. ..+.||+|+....++
T Consensus       124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pESP~wL~~~~  202 (451)
T PF00083_consen  124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL-RFFLPESPRWLLSKG  202 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccceecccc
Confidence            999999999999999999999999999999988876654433   4999999988888765554 467899987532221


Q ss_pred             hhHH--HHHHc--------CCCcc------cccCCCccHHHhhcCCc----hHHHHHHHHHH-HHHHHHHHHhhHHHHHh
Q 016338          171 KSEL--RLIQA--------GKSDS------VKKRNPPSLRHLLSKLP----SWTVIIANITN-NWGYFVLLSWMPIYFNT  229 (391)
Q Consensus       171 ~~~~--~~~~~--------~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  229 (391)
                      +.++  +..++        ++.++      +.++.+..++++++++.    ........... .........+.|..+++
T Consensus       203 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~  282 (451)
T PF00083_consen  203 RDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN  282 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence            1110  00000        00000      11111134566666643    22222222222 22333444555655555


Q ss_pred             hhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhh-----cCCc----hhH
Q 016338          230 VFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN-----YAKS----PAV  300 (391)
Q Consensus       230 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~  300 (391)
                       .+.+..  -.......+...++.+....+.||+|||         .....+...+.++...+.     ..++    ...
T Consensus       283 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (451)
T PF00083_consen  283 -AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRR---------KLLIIGLLLMAICSLILGIIFFLGVSSSSWWSIL  350 (451)
T ss_pred             -cccccc--cccccccccccccccccccccccccccc---------cccccccccccccccccccccccccccccccccc
Confidence             566665  2223344455667777888999999954         444455555555544442     1122    122


Q ss_pred             HHHHHHHH-HHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHH
Q 016338          301 AAVLITIA-LSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTT  378 (391)
Q Consensus       301 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  378 (391)
                      ......+. ..+.....+....+..|.+| +.|+++.|+....++++++++|.+...+.+..+ ....+.+.+++.++..
T Consensus       351 ~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~i~~  429 (451)
T PF00083_consen  351 SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-GWGVFLIFAGVCLIAI  429 (451)
T ss_pred             cceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccchhhHHHHHHHH
Confidence            22222222 22232344556678899999 899999999999999999999999999998876 4455555555555555


Q ss_pred             HHHHHhcc
Q 016338          379 IFWNLYST  386 (391)
Q Consensus       379 ~~~~~~~~  386 (391)
                      +...++.+
T Consensus       430 i~~~~~lp  437 (451)
T PF00083_consen  430 IFVYFFLP  437 (451)
T ss_pred             hheeEEEe
Confidence            55444433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.92  E-value=4.6e-25  Score=180.64  Aligned_cols=362  Identities=17%  Similarity=0.233  Sum_probs=248.4

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhh-cCchHHHHHHHHHHHHHHhhhhhh-hccchHHHHHHHHH
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPWA-ATHSTASLLAVRAF   81 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~r~l   81 (391)
                      +..++.+|.+++.++..++.++|++...+..++.|++.|| +|-|..-.+-+....+|.++.+.. .++.+|++..+|++
T Consensus        66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~  145 (459)
T KOG4686|consen   66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFL  145 (459)
T ss_pred             hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhee
Confidence            3456677888888999999999999999999999999996 588877777777777777776322 35899999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchh---------HHHHHHHHHHHHH
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISG---------PFILFSSLGLLWL  152 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~---------~f~~~~~~~~~~~  152 (391)
                      .|+|.....++.++++..|+..||.+.++|+..+...+|..+--.+.+++.+..+--.         .....+...+...
T Consensus       146 FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~s  225 (459)
T KOG4686|consen  146 FGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQS  225 (459)
T ss_pred             eccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence            9999998889999999999999999999999999999999998888888877543110         1122222222222


Q ss_pred             HHHhhccccCCCCCCCCChhHHHH-HHcCCCcccccCCCccHHHhh-cCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 016338          153 STWTSKVTNDPCNSPFVSKSELRL-IQAGKSDSVKKRNPPSLRHLL-SKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV  230 (391)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (391)
                      +.+....--..+      +.|... .++....+ +    ..+.+.. -.|.+|.+....++++...+.+...-|.++++.
T Consensus       226 lical~lg~~D~------rAerilh~e~g~~Ge-~----pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r  294 (459)
T KOG4686|consen  226 LICALSLGLSDD------RAERILHLEEGFLGE-E----PKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKR  294 (459)
T ss_pred             HHHHHHhhhhhh------HHHHHHhhhcCcccC-C----cccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence            222111100000      001000 01110000 0    0111111 147899999999999999999999999999999


Q ss_pred             hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhH-hhHHHHHHhhcC-CchhHHHHHHHHH
Q 016338          231 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI-GPGVSLLCLNYA-KSPAVAAVLITIA  308 (391)
Q Consensus       231 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~  308 (391)
                      +|+|+..++.+.+.......+..++.|.++||+|++         .....+.. ....+-..+.++ -+++.......+.
T Consensus       295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n---------~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLs  365 (459)
T KOG4686|consen  295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN---------LWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLS  365 (459)
T ss_pred             hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce---------ehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhh
Confidence            999999999999999999999999999999999965         22222222 222221222221 1233222222221


Q ss_pred             HHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhH---HHHHHHHHHHHHHHHHHHh
Q 016338          309 LSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQA---FLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~---~~~~~~~~~~~~~~~~~~~  384 (391)
                         ........+..+..+.| ++.|+++|.++.+.++|-.+.|.+.|.+.|..|+|..   .|...+.+.+.+..+.+.+
T Consensus       366 ---ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  366 ---YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             ---HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence               12222224445555666 6889999999999999999999999999998876543   4555666666666666665


Q ss_pred             ccCc
Q 016338          385 STGE  388 (391)
Q Consensus       385 ~~~~  388 (391)
                      .|++
T Consensus       443 N~kq  446 (459)
T KOG4686|consen  443 NKKQ  446 (459)
T ss_pred             eccc
Confidence            5544

>TIGR00788 fbt folate/biopterin transporter

Probab=99.91  E-value=9.2e-23  Score=190.32  Aligned_cols=343  Identities=14%  Similarity=0.032  Sum_probs=226.6

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcC-----chHHHHHHHHHHH-HHHhhhhhhhccchHHH-
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYG-----GKKVLAWGVALWS-LSTLLTPWAATHSTASL-   75 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~-~~~~~~~~a~~~~~~~~-   75 (391)
                      ...|.+.+++|+|+++++...+...+...+-.+ +|+++||++     ||+.++++.++.. +.....  +..++.... 
T Consensus        47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l--~~~~~~~~~~  123 (468)
T TIGR00788        47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLL--PGKVSSAKVA  123 (468)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhc--ccccchHHHH
Confidence            355667888999999999999999999998555 999999998     7778888877663 333333  333554444 


Q ss_pred             HHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHH---HHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHH
Q 016338           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAI---GICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWL  152 (391)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~---~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~  152 (391)
                      .+..++.+++.+...+...++..|..+ |++....   +......++|..+++.+++.+.+.++||..|++.+.+.++..
T Consensus       124 ~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~  202 (468)
T TIGR00788       124 AAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQL  202 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence            458899999999999999999999998 5554433   333344558999999999999999999999999988887764


Q ss_pred             HHHhhccccCCC-CCCCCChhHH---HHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHH-HHHHHHHHHHhhHHHH
Q 016338          153 STWTSKVTNDPC-NSPFVSKSEL---RLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANIT-NNWGYFVLLSWMPIYF  227 (391)
Q Consensus       153 ~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  227 (391)
                      +. ..+.+|++. ..++.++++.   .....+. .+..++...+.++.+++|.++...+..++ ..........+. .+.
T Consensus       203 ~~-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f-~~~  279 (468)
T TIGR00788       203 FV-SNLSKERRAFVRPRIGTYLEMNMALLTLGV-LANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVF-CAT  279 (468)
T ss_pred             HH-HHhcccccccccccccccchhhhhhhhhhH-HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeE-EEE
Confidence            43 444566431 1111101000   0000000 00001112245666788888876665555 222211111111 133


Q ss_pred             HhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc----------CCc
Q 016338          228 NTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY----------AKS  297 (391)
Q Consensus       228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~  297 (391)
                      ++..|+++.+.|......+++.+++....+++.+|++.         +..+..+.+...+.......          .++
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~---------r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~  350 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPY---------RLLFGVTTLLYTLSSLFDLILVKRWNLAFGISD  350 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCH---------HHHHHHHHHHHHHHHhCceeeeeccccccCCCC
Confidence            34589999999999999999999999999999888874         34555555555554432210          022


Q ss_pred             hhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          298 PAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      .+.......+.....+........++.+..| +++|+.+++.+++.++|..+++.++|.+.++.|
T Consensus       351 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       351 EVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             eeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            2222233333334444445555666666666 899999999999999999999999999998876

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.91  E-value=6.4e-21  Score=178.19  Aligned_cols=331  Identities=14%  Similarity=0.050  Sum_probs=210.8

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhc----CchHHH-HHHHHHHHHHHhhhhhh---hcc--chHH
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY----GGKKVL-AWGVALWSLSTLLTPWA---ATH--STAS   74 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~~~a---~~~--~~~~   74 (391)
                      .+.+++++|++..++|.+.+...+..++..++.|+++||.    ||||.. .++.+...+...+.-..   .++  ....
T Consensus        32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (448)
T PRK09848         32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY  111 (448)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence            3456777899999999999999999999999999999996    777644 55555444444332111   111  2233


Q ss_pred             HHHHHHHHHhhhhchhhhHHHHhhhhcC-ccchhhHHHHHHhhhh-----hhHHHHhhHHHHHHhhc--CchhHHHHHHH
Q 016338           75 LLAVRAFFGLAEGVAMPAMSTLTSRWFP-SHERASAIGICMGGFH-----LGNVVGLLLTPIMLSTI--GISGPFILFSS  146 (391)
Q Consensus        75 ~~~~r~l~G~g~~~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~-----lg~~~g~~~~~~l~~~~--gwr~~f~~~~~  146 (391)
                      .++.-.+.+++.+...+...++..|..+ +++|.+..+....+.+     ++..++|.+.+...+..  +|.....+.++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v  191 (448)
T PRK09848        112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAI  191 (448)
T ss_pred             HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            4555667788888888777787777664 4678887766654433     44555555554321111  12111123333


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHH
Q 016338          147 LGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIY  226 (391)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (391)
                      +..+..+......||+++++.++                 +...+.+++++|||.++...+..++............|.|
T Consensus       192 ~~~~~~~~~~~~~~e~~~~~~~~-----------------~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~  254 (448)
T PRK09848        192 AGMVLYFICFKSTRENVVRIVAQ-----------------PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFY  254 (448)
T ss_pred             HHHHHHHHHHcCcEeccCCCccC-----------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheee
Confidence            44444444444445543221110                 0112246789999999999888888888888888888888


Q ss_pred             HHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC--chhHHHHH
Q 016338          227 FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVL  304 (391)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  304 (391)
                      +++.+|.++...++......++..++.++.+++.||+++|         ..+..+..+..++...+...+  +.+.....
T Consensus       255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~---------~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~  325 (448)
T PRK09848        255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK---------NTFLIGALLGTCGYLLFFWVSVWSLPVALVA  325 (448)
T ss_pred             EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHcCchhHHHHHHH
Confidence            8888888776665555554567788899999999999854         334445555444444433322  23333332


Q ss_pred             HHHHHHhhhhcccchhhhhhhccc--------cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          305 ITIALSLSSFSQAGYLLNIQEIAP--------DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      ..+.....+...+...+...|..|        +++|..+|+.+....+|..+++.+.+.+.+..|
T Consensus       326 ~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        326 LAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            333333334444555556555544        245999999999999999999999999887655

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.90  E-value=1.3e-20  Score=173.79  Aligned_cols=367  Identities=12%  Similarity=0.073  Sum_probs=223.9

Q ss_pred             hhh-HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhc-CchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHH
Q 016338            5 VVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (391)
Q Consensus         5 ~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~   82 (391)
                      +|. +.+++|.++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++.+.. ..+...+.+...+.
T Consensus        32 L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~-~~~~~~~~l~l~li  110 (493)
T PRK15462         32 LILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS-EIHPSFLYLSLAII  110 (493)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHH
Confidence            344 4667899999999999999999999999999999999 99999999999999998776332 11223344444455


Q ss_pred             HhhhhchhhhHHHHhhhhcCcc--chhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSH--ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      ++|.|...+...++++|.+|++  +|..++++.....++|..++|.+.+++.+..|||+.|.+.++..++..+..+...+
T Consensus       111 ~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~  190 (493)
T PRK15462        111 VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNR  190 (493)
T ss_pred             HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5666777677789999999875  69999999999999999999999999999999999999876544443333322221


Q ss_pred             cCCCC---CCCCChhHHHH----------------HHcCC-Cccc-------------------ccCCCccHHHhhcCC-
Q 016338          161 NDPCN---SPFVSKSELRL----------------IQAGK-SDSV-------------------KKRNPPSLRHLLSKL-  200 (391)
Q Consensus       161 ~~~~~---~~~~~~~~~~~----------------~~~~~-~~~~-------------------~~~~~~~~~~~~~~~-  200 (391)
                      ..++.   +++..++++..                ..... .++.                   .+++ .+  +.-|+| 
T Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~er~r~  267 (493)
T PRK15462        191 HFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKA-EN--QKQRKEL  267 (493)
T ss_pred             hhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--HHHHhhH
Confidence            11110   01110000000                00000 0000                   0000 00  111222 


Q ss_pred             -chHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCC----cchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 016338          201 -PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN----LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRK  275 (391)
Q Consensus       201 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~  275 (391)
                       .+..+.+.....+..+....+-+..|.++..+.+    +.......+...+..++..++.+++-.|..+|+.......|
T Consensus       268 ~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~K  347 (493)
T PRK15462        268 GLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGK  347 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH
Confidence             1223333444444455555556666666542221    12355666777777888888888887777543222222233


Q ss_pred             HHHHHHhHhhHHHHHHhhc-----C----CchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHH-HH
Q 016338          276 IMQSIGFIGPGVSLLCLNY-----A----KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAG-TL  344 (391)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~-~~  344 (391)
                      ..  ++++.++++...+..     .    .+.++.+....+......+..|.-.+...+..| +.+|..+|...... .+
T Consensus       348 fa--~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~  425 (493)
T PRK15462        348 FA--LGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAI  425 (493)
T ss_pred             HH--HHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            33  444444444433311     1    234445555555566667778888888888888 79999999986533 46


Q ss_pred             HHHHHHHHhhHhhcc-----------ccchhHHHHHHHHHHHHH
Q 016338          345 AAIISTIGTGYFVQW-----------LGSFQAFLTVTAGLYFVT  377 (391)
Q Consensus       345 g~~i~~~~~g~l~~~-----------~g~~~~~~~~~~~~~~~~  377 (391)
                      |..++..+.+...+.           ...|...|...+...++.
T Consensus       426 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        426 ANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            666666655554311           112555666666555444

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.90  E-value=9.6e-22  Score=182.57  Aligned_cols=333  Identities=17%  Similarity=0.182  Sum_probs=253.2

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhh----hcCchH-HHHHHHHHHHHHHhhhhhhhcc-------c
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVD----KYGGKK-VLAWGVALWSLSTLLTPWAATH-------S   71 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~-~~~~~~~~~~~~~~~~~~a~~~-------~   71 (391)
                      ..+.+.+.+|+++..+|.+..+..+..++..|+.|.++|    |+|||| .++++....+++..+.... .+       .
T Consensus        24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~-~p~~~~~~~~  102 (428)
T PF13347_consen   24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSP-PPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcc-ccchhhhhhH
Confidence            345667778999999999999999999999999999999    899766 5567778888877776322 02       2


Q ss_pred             hHHHHHHHHHHHhhhhchhhhHHHHhhhhcC-ccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc-------CchhHHHH
Q 016338           72 TASLLAVRAFFGLAEGVAMPAMSTLTSRWFP-SHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-------GISGPFIL  143 (391)
Q Consensus        72 ~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~-------gwr~~f~~  143 (391)
                      ...+.+.-++..++.........++..|..+ +|+|.+..+..+....+|..+...+.+.+.+..       +|++...+
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            3345677777789888888999999999997 568999999999999999876666666655422       59999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhh
Q 016338          144 FSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWM  223 (391)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (391)
                      .+++.++..+...+..+|++++.++              ++++.+..+.+++++|||.++......++............
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~~~--------------~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~  248 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEVTE--------------QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFL  248 (428)
T ss_pred             HHHHHHHHhhhhhheeeeccccccc--------------cccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHH
Confidence            9999988888888887772211111              01122234467899999999999999999988888888888


Q ss_pred             HHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcC--CchhHH
Q 016338          224 PIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA--KSPAVA  301 (391)
Q Consensus       224 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  301 (391)
                      +.|.++..|.+ ...+.+.....+...++.++.++++||+|+|         .....+..+..++.......  ++.+..
T Consensus       249 ~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (428)
T PF13347_consen  249 PYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKK---------KVYIIGLLLAALGFLLLFFLGPGSPWLV  318 (428)
T ss_pred             HHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccce---------eehhhhHHHHHHHHHHHHHHHhhhHHHH
Confidence            88888877777 5667777788889999999999999999965         34445555555555444443  356666


Q ss_pred             HHHHHHHHHhhhhcccchhhhhhhccc--------cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          302 AVLITIALSLSSFSQAGYLLNIQEIAP--------DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      .+...+.+...+.......+...|..+        +..|..+|..+....++..+++.+.+.+.+..|
T Consensus       319 ~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  319 LILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            666666666666666667777666554        345899999999999999999999999987655

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.90  E-value=8.1e-21  Score=178.37  Aligned_cols=336  Identities=11%  Similarity=0.026  Sum_probs=223.3

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhh----hcCc-hHHHHHHHHHHHHHHhhhhhhh--cc--chHHH
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVD----KYGG-KKVLAWGVALWSLSTLLTPWAA--TH--STASL   75 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~a~--~~--~~~~~   75 (391)
                      ...+.+.+|+|+.++|.+..+.-+.-++..|+.|.++|    |+|| |+.++++....+++..+.-...  ++  .+..+
T Consensus        30 ~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~  109 (473)
T PRK10429         30 MYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFV  109 (473)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            34456677999999999999999999999999999999    6699 5677778777777765552111  11  13345


Q ss_pred             HHHHHHHHhhhhchhhhHHHHhhhhc-CccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh-------cCchhHHHHHHHH
Q 016338           76 LAVRAFFGLAEGVAMPAMSTLTSRWF-PSHERASAIGICMGGFHLGNVVGLLLTPIMLST-------IGISGPFILFSSL  147 (391)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~-------~gwr~~f~~~~~~  147 (391)
                      ++..++.+++.....+...++..|.. ++++|.+..+....+.++|..+.+.+...+.+.       .+|+....+.+++
T Consensus       110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~  189 (473)
T PRK10429        110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAF  189 (473)
T ss_pred             HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence            56667778888888888899999998 588999999987787888766665554433222       2567777777777


Q ss_pred             HHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHH
Q 016338          148 GLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYF  227 (391)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (391)
                      .++..+..++..+|+++++...+++           +++.+..+.++.+++||.++......++..........+.+.|.
T Consensus       190 ~~~~~~~~~~~~~e~~~~~~~~~~~-----------~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~  258 (473)
T PRK10429        190 FIVSTIITLRNVHEVYSSDNQVSAE-----------GSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYF  258 (473)
T ss_pred             HHHHHHHHHcCceecCCcccccccc-----------ccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEE
Confidence            6666666666666654221110000           01111223456677899888888888888777777777777666


Q ss_pred             HhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHh-----hcCCchhHHH
Q 016338          228 NTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL-----NYAKSPAVAA  302 (391)
Q Consensus       228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  302 (391)
                      +... .++...+.+.....+..+++.++.+++.||+|+|       +  ....+..+..++....     ...++.+...
T Consensus       259 ~y~~-~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (473)
T PRK10429        259 TYVI-GDADLFPYYLSYAGAANLVTLILFPRLVKSLSRR-------I--LWAGASIFPVLSCGVLLLMGLAAPHNALLIV  328 (473)
T ss_pred             EEEC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-------H--HHHHHHHHHHHHHHHHHHHhccCchhHHHHH
Confidence            6543 3555666677776788899999999999999965       2  2223333222222111     1122333333


Q ss_pred             HHHHHHHHhhhhcccchhhhhhhccc--------cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          303 VLITIALSLSSFSQAGYLLNIQEIAP--------DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      +...+.....+.......++..|..+        +..|...|..+....++..+++.+.|.+.+..|
T Consensus       329 i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        329 IAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33333333444444555666666533        334668999999999999999999999988765

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.89  E-value=2.7e-20  Score=162.39  Aligned_cols=354  Identities=14%  Similarity=0.054  Sum_probs=263.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhcCchH-HHHHHHHHHHHHHhhhhhhhc-cchHHHHHHHHHHHhhhhchhhhHH
Q 016338           17 SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKK-VLAWGVALWSLSTLLTPWAAT-HSTASLLAVRAFFGLAEGVAMPAMS   94 (391)
Q Consensus        17 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~r~l~G~g~~~~~~~~~   94 (391)
                      +..+...++..+..++.+|+.|.++|+.|+|| .+-....+..+..+...++.. ++++..++.-.+..++.....+...
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            45788999999999999999999999999766 555555555666666644433 2345556677888999999999999


Q ss_pred             HHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHH--HH-H---------------hhcCchhHHHHHHHHHHHHHHHHh
Q 016338           95 TLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTP--IM-L---------------STIGISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        95 ~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~--~l-~---------------~~~gwr~~f~~~~~~~~~~~~~~~  156 (391)
                      +++.+..++++-++..+.-.....+|..+.-.+.-  .. .               +...-|..+.+.++.-++..+..+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            99999999888888877777777777666554431  11 1               223468889999999999999988


Q ss_pred             hccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcc
Q 016338          157 SKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (391)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  236 (391)
                      +..||.++.....++.-...         -++.+.+++++.+++.+....+..+++.-+..+.......|....+|++..
T Consensus       218 ~~v~~~~~~~~~~~~~l~~g---------~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~  288 (438)
T COG2270         218 LNVHDAEKISSPPPTALRNG---------FKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSST  288 (438)
T ss_pred             hcccccccccccchHHHHHH---------HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHH
Confidence            88888775431111111110         111234678888999999999999999999999999999999988999999


Q ss_pred             hhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcc
Q 016338          237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQ  316 (391)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (391)
                      +..++.....+.+++|+++.|++.||++.|         .++..+.+...+..+...........+++.++.+.+.+...
T Consensus       289 ~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k---------~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q  359 (438)
T COG2270         289 ELLLIGIALSVVAALGAIIAGFLDERFGSK---------PVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ  359 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---------eeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence            999999999999999999999999999965         34444444444433333333444444454444444444444


Q ss_pred             cchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          317 AGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       317 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      ...-++..+..| ++.++.+|+++..++..+..+|.+.+.+.+.+|+.+..+....++..++.+..+..+.++
T Consensus       360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~~  432 (438)
T COG2270         360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVPG  432 (438)
T ss_pred             HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCCC
Confidence            445555555555 899999999999999999999999999999999888888888888888888877766443

>PRK11462 putative transporter; Provisional

Probab=99.86  E-value=5.6e-18  Score=158.12  Aligned_cols=329  Identities=14%  Similarity=0.064  Sum_probs=213.6

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhh----cCchH-HHHHHHHHHHHHHhhhhhhhccc------hH
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK----YGGKK-VLAWGVALWSLSTLLTPWAATHS------TA   73 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~a~~~~------~~   73 (391)
                      ...+.+..|+++..+|.+..+.-+--++..|+.|.++||    +|||| .++++....+++.+++-..  ++      ..
T Consensus        33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~--p~~s~~~~~~  110 (460)
T PRK11462         33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST--PDLSMNGKMI  110 (460)
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC--CCCCcchHHH
Confidence            344567789999999999999999999999999999995    68865 5556667777776665222  32      34


Q ss_pred             HHHHHHHHHHhhhhchhhhHHHHhhhhcC-ccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc-------CchhHHHHHH
Q 016338           74 SLLAVRAFFGLAEGVAMPAMSTLTSRWFP-SHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-------GISGPFILFS  145 (391)
Q Consensus        74 ~~~~~r~l~G~g~~~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~-------gwr~~f~~~~  145 (391)
                      .+.+.-++..++.......-.++..|..+ +|||.+..++...+..+|..+++.+...+.+..       +|+....+.+
T Consensus       111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~  190 (460)
T PRK11462        111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLS  190 (460)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            45666677788888888888999999886 688999999999999999888887765554433       5777777777


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHH
Q 016338          146 SLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPI  225 (391)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (391)
                      ++.++....++...+|+++++++  +               .+.++.++..++||.++......++..............
T Consensus       191 ii~~i~~~i~~~~~kE~~~~~~~--~---------------~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y  253 (460)
T PRK11462        191 VVAFMMLAFCFFTTKERVEAPPT--T---------------TSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMY  253 (460)
T ss_pred             HHHHHHHHHHHhcceeccCCCcc--C---------------CCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence            77777666666655554332111  0               001225677888988887766666665555555455554


Q ss_pred             HHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC-chhHHHHH
Q 016338          226 YFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVL  304 (391)
Q Consensus       226 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  304 (391)
                      |.+...|. +...+.+.....++.+++.++.+++.||+++|       +... .................. +.......
T Consensus       254 ~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (460)
T PRK11462        254 YVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV-------TIFW-WTNALLAVISLAMFFVPMQASITMFVF  324 (460)
T ss_pred             hhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-------HHHH-HHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence            55544443 33445566677788889999999999999865       2222 111111111121111112 22222222


Q ss_pred             HHHHHHhhhhcccchhhhhhhccc--------cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          305 ITIALSLSSFSQAGYLLNIQEIAP--------DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      .++.+...+...+....+..|..+        +..|...+.......+|..+++.+.|.+.+..|
T Consensus       325 ~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        325 IFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            222222233333434445554433        223555677778899999999999999887654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.85  E-value=9.1e-18  Score=147.13  Aligned_cols=360  Identities=13%  Similarity=0.111  Sum_probs=251.2

Q ss_pred             hHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcC-----chHH-HHHHHHHHHHHHhhhhhhh---cc-------
Q 016338            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYG-----GKKV-LAWGVALWSLSTLLTPWAA---TH-------   70 (391)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~-~~~~~~~~~~~~~~~~~a~---~~-------   70 (391)
                      -+..|++++..-.+.+.+...+.. ...+.+|+.+|+.+     ||.. +..|.++...+..+.+++.   +.       
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            367799999999999999999875 46999999999999     7754 4555666666665554331   22       


Q ss_pred             ch--H--HHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchh---HHHH
Q 016338           71 ST--A--SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISG---PFIL  143 (391)
Q Consensus        71 ~~--~--~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~---~f~~  143 (391)
                      +.  +  .....-.+.|+|.+.......+++.|..|+|+|+++.++...+.-+|.+++..+.+.+.+.+.-.-   .+..
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~  163 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG  163 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence            22  2  234456777999999889999999999999999999999999999999999999999888765322   2222


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhh
Q 016338          144 FSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWM  223 (391)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (391)
                      .+++.....++..+ ..|++.+++...           +++++......++++..+|+........+.....++.=...+
T Consensus       164 ~a~i~~~l~~ia~w-g~E~r~~~~~~~-----------~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iL  231 (403)
T PF03209_consen  164 VALIALLLNLIALW-GQEPRRSRRAAA-----------AERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVIL  231 (403)
T ss_pred             HHHHHHHHHHHHHH-hcccCCcccccC-----------CCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHc
Confidence            23333333333222 223222221100           011112223467888889999988888888888888888889


Q ss_pred             HHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHH-HHhhccchhHHHHHHHHHHhHhhHHHHHH---hhcCCchh
Q 016338          224 PIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDS-LIKAGYSLTLVRKIMQSIGFIGPGVSLLC---LNYAKSPA  299 (391)
Q Consensus       224 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  299 (391)
                      -+|--+.+|++..+...+......+..++....|++..| .+++       |  ....+......++..   .....+.+
T Consensus       232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-------~--~a~~G~~~~~~~f~lii~a~~~~~~~  302 (403)
T PF03209_consen  232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-------R--TAALGCLLGALAFALIILAGPLGSPW  302 (403)
T ss_pred             CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-------H--HHHHHHHHHHHHHHHHHHHHhcccch
Confidence            999999999999999999999999999999999988774 3322       2  222333333333322   33445556


Q ss_pred             HHHHHHHHHHHhhhhcccchhhhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHhhHhhccc----c-----chhHHHHH
Q 016338          300 VAAVLITIALSLSSFSQAGYLLNIQEIA-PDCAGFLHGIANSAGTLAAIISTIGTGYFVQWL----G-----SFQAFLTV  369 (391)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~----g-----~~~~~~~~  369 (391)
                      .+-...++.+...+.+.....+.+.+.. +++.|..+|.-...+.++..++..+.|.+.|..    +     .|...|.+
T Consensus       303 ~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~l  382 (403)
T PF03209_consen  303 LFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFAL  382 (403)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence            5555555555555555555555555554 589999999999999999999999999988742    2     26777777


Q ss_pred             HHHHHHHHHHHHHHhccCc
Q 016338          370 TAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~  388 (391)
                      =++..+++.++.....+++
T Consensus       383 Ea~ll~~a~~ll~~l~~~~  401 (403)
T PF03209_consen  383 EAVLLLAALVLLGRLDRRE  401 (403)
T ss_pred             HHHHHHHHHHHHHHhhhhc
Confidence            7777777777666555544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.85  E-value=8.1e-19  Score=153.95  Aligned_cols=363  Identities=17%  Similarity=0.169  Sum_probs=256.4

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhc----cchH--HHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT----HSTA--SLL   76 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~----~~~~--~~~   76 (391)
                      +......+.++ |.+..-|..-+|++.+....+++-|+.||+|-|...+++..+.++|..+--.+..    +.++  ...
T Consensus        66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~  144 (480)
T KOG2563|consen   66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTH  144 (480)
T ss_pred             hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhH
Confidence            44455666677 7777889999999999999999999999999999999999999999998644322    3445  677


Q ss_pred             HHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc------Cchh--HHHHHHHHH
Q 016338           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI------GISG--PFILFSSLG  148 (391)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~------gwr~--~f~~~~~~~  148 (391)
                      .++.+.+..+-.....-..+..-|||+++|..+..+-..+..+|.+++.++...+..+-      .|..  .|+..+.+.
T Consensus       145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~  224 (480)
T KOG2563|consen  145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLA  224 (480)
T ss_pred             HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHH
Confidence            88999999888877777788889999999999999999999999999998888876543      3544  355555555


Q ss_pred             HHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 016338          149 LLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFN  228 (391)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (391)
                      .+..++..+..+++|+..+.......+          +.+...+.++.++|+++....+.+......+++..+.+..-+.
T Consensus       225 ~l~l~l~~~~~~~~P~tPps~s~~~~~----------~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~  294 (480)
T KOG2563|consen  225 ALLLALVLFVFTKKPPTPPSASQAALQ----------DASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALC  294 (480)
T ss_pred             HHHHHHHHHhcCCCCCCCCchhHhhhh----------cCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccc
Confidence            555555555555555443322111111          1124457889999999999999888888888888777765665


Q ss_pred             hhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHH-HHHhhcC----CchhHHHH
Q 016338          229 TVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS-LLCLNYA----KSPAVAAV  303 (391)
Q Consensus       229 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~  303 (391)
                      . -|++...+|+......++++++..+.|.+.||.++-       + ..+........++ +.+....    +.......
T Consensus       295 ~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f-------k-~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t  365 (480)
T KOG2563|consen  295 P-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF-------K-LTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTT  365 (480)
T ss_pred             c-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH-------H-HHHHHHHHHHHHHHHHHHHhhccCCceEehhhh
Confidence            5 578888999999999999999999999999998753       2 2222233333333 2222222    22333333


Q ss_pred             HHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc---chhHHHHHHHHHHHHHHHH
Q 016338          304 LITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG---SFQAFLTVTAGLYFVTTIF  380 (391)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g---~~~~~~~~~~~~~~~~~~~  380 (391)
                      +..++.+..+..+...-.-.+..+|..-++..|+.+..+++-+.+-..+.+...+..+   ++...-+.......+..++
T Consensus       366 ~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l  445 (480)
T KOG2563|consen  366 CGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAIL  445 (480)
T ss_pred             HHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHH
Confidence            4444444444444334444556788888899999999999999999999999888765   1222334444444444444


Q ss_pred             HHHhc
Q 016338          381 WNLYS  385 (391)
Q Consensus       381 ~~~~~  385 (391)
                      ..+.+
T Consensus       446 va~~r  450 (480)
T KOG2563|consen  446 VAFFR  450 (480)
T ss_pred             Hhhhh
Confidence            44443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.2e-17  Score=150.51  Aligned_cols=333  Identities=17%  Similarity=0.163  Sum_probs=255.2

Q ss_pred             HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhh----cCch-HHHHHHHHHHHHHHhhhhhhh----ccchHHHHHH
Q 016338            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK----YGGK-KVLAWGVALWSLSTLLTPWAA----THSTASLLAV   78 (391)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~   78 (391)
                      ..+.+|+|+..+|.+..+-=+--++.-|+.|.+.||    +||| +.++++....++.+.++-...    ..+....++.
T Consensus        39 YTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vt  118 (467)
T COG2211          39 YTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVT  118 (467)
T ss_pred             HhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHH
Confidence            456689999999999999999999999999999995    7775 577777788888887763331    1234566777


Q ss_pred             HHHHHhhhhchhhhHHHHhhhhcC-ccchhhHHHHHHhhhhhhHHHHhhHHHHHHh-------hcCchhHHHHHHHHHHH
Q 016338           79 RAFFGLAEGVAMPAMSTLTSRWFP-SHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGISGPFILFSSLGLL  150 (391)
Q Consensus        79 r~l~G~g~~~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~-------~~gwr~~f~~~~~~~~~  150 (391)
                      -.+.+++......+-.++.+|..+ ++||.+..+..+...++|..+...+.+.+..       ..||+..-.+.+++..+
T Consensus       119 Y~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i  198 (467)
T COG2211         119 YMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVI  198 (467)
T ss_pred             HHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Confidence            888899999998889999999874 5789999999999999997777766655543       34799999999999999


Q ss_pred             HHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 016338          151 WLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV  230 (391)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (391)
                      ..+.+++..+|++.+..+.+++            .+++..+++..+++||.+...++..++.........+....|.+..
T Consensus       199 ~~l~~~~~v~ER~~~~~~~~~~------------~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~  266 (467)
T COG2211         199 LLLFCFFNVKERVVETQPTKTG------------VKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV  266 (467)
T ss_pred             HHHHHHHHhhcccCccccCccc------------ccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE
Confidence            9999998888876533221111            1112223456788999999999988888888888888888899988


Q ss_pred             hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC--chhHHHHHHHHH
Q 016338          231 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIA  308 (391)
Q Consensus       231 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  308 (391)
                      +|.+.............+.+.+.++..++.+|+|+|         .+...+.+...+......+.+  +....++..++.
T Consensus       267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk---------~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~  337 (467)
T COG2211         267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK---------KLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIA  337 (467)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH---------HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHH
Confidence            888888888888888888888899999999999954         455555666655555555444  334444444566


Q ss_pred             HHhhhhcccchhhhhhhccc--------cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          309 LSLSSFSQAGYLLNIQEIAP--------DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      ....+..++...++..|..+        +..|...|....+.-+|.+++..+.|++.+..|
T Consensus       338 ~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         338 GVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            66666777777777766543        335888999999999999999999999988765

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.84  E-value=2.2e-22  Score=188.50  Aligned_cols=356  Identities=17%  Similarity=0.171  Sum_probs=3.0

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhh--hcc---------
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA--ATH---------   70 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a--~~~---------   70 (391)
                      +..+++++++|++++++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++.++|++++++=  ..+         
T Consensus        23 ~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~  102 (539)
T PF03137_consen   23 NSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASN  102 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccc
Confidence            456789999999999999999999999999999999999999888899999999999999987321  000         


Q ss_pred             -------------------------------------chHHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHH
Q 016338           71 -------------------------------------STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGIC  113 (391)
Q Consensus        71 -------------------------------------~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~  113 (391)
                                                           -+..+++++++.|+|....++...+++.|..++|+-+..+|+.
T Consensus       103 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~  182 (539)
T PF03137_consen  103 SNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGIL  182 (539)
T ss_dssp             -------------------------------------------------SSS----------------------------
T ss_pred             cccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhh
Confidence                                                 1347788999999999999999999999999999999999999


Q ss_pred             HhhhhhhHHHHhhHHHHHHhh---------------------cC-chhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCh
Q 016338          114 MGGFHLGNVVGLLLTPIMLST---------------------IG-ISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSK  171 (391)
Q Consensus       114 ~~~~~lg~~~g~~~~~~l~~~---------------------~g-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (391)
                      .+...+|.++|.++++.+.+.                     .| |..-|++.+.+.++..+....++++.|+.++..++
T Consensus       183 ~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~  262 (539)
T PF03137_consen  183 YAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEE  262 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccch
Confidence            999999999999999876531                     12 77788889999888888888887776665211111


Q ss_pred             hH------HHHHHcC-CCc-------ccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcch
Q 016338          172 SE------LRLIQAG-KSD-------SVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ  237 (391)
Q Consensus       172 ~~------~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  237 (391)
                      ++      ++..+++ .++       +..+...+..+++++||.+....+..........++.++.|.|++++++.++.+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~  342 (539)
T PF03137_consen  263 KESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQ  342 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            11      0000000 011       111233456788999999999999999999999999999999999999999999


Q ss_pred             hhHHhhhHHH-HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHH--HHHHhh------------cC------C
Q 016338          238 AAWFSAVPWG-TMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV--SLLCLN------------YA------K  296 (391)
Q Consensus       238 ~~~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------~~------~  296 (391)
                      ++++.....+ +.++|.+++|++.+|++-+....   .+.......+....  ..+.+.            ..      .
T Consensus       343 A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~---~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~  419 (539)
T PF03137_consen  343 ASLLTGIVSIPGAALGILLGGYIVKKFKLSARGA---AKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSP  419 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhhhhcchhheehheEEEEEEEecCcHHHH---HHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCC
Confidence            9998876665 67788899999999997541110   11111111111111  011100            00      0


Q ss_pred             --------------------------c----hhHHHHHHHHHHHh-hhhcccchhhhhhhccccchhHHHHHHHHHHHH-
Q 016338          297 --------------------------S----PAVAAVLITIALSL-SSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTL-  344 (391)
Q Consensus       297 --------------------------~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-  344 (391)
                                                +    .....+..++..+. .....|......+-+.+++|+.+.|+...+.++ 
T Consensus       420 ~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rll  499 (539)
T PF03137_consen  420 SCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLL  499 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhh
Confidence                                      0    00111122222222 223344455556667779999999999888765 


Q ss_pred             HHHHHHHHhhHhhccc
Q 016338          345 AAIISTIGTGYFVQWL  360 (391)
Q Consensus       345 g~~i~~~~~g~l~~~~  360 (391)
                      |.+-+|.+.|.+.|..
T Consensus       500 g~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  500 GFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ----------------
T ss_pred             cCcchHHHHhHHHhhh
Confidence            8899999999999973

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=6.7e-19  Score=165.09  Aligned_cols=265  Identities=16%  Similarity=0.192  Sum_probs=215.8

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhh--h---------c-
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA--A---------T-   69 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a--~---------~-   69 (391)
                      +..+.++.+.|+++.++.|++.+.+-++..+...+..+...|.-|-|.+-+|+++.+++++++++=  +         . 
T Consensus       117 ~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~  196 (735)
T KOG3626|consen  117 NSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI  196 (735)
T ss_pred             hhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence            346778999999999999999999999999999999999999999999999999999999987331  0         0 


Q ss_pred             ------c--------------------------------chHHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHH
Q 016338           70 ------H--------------------------------STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIG  111 (391)
Q Consensus        70 ------~--------------------------------~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~  111 (391)
                            +                                -+..++++.++.|+|....++...+++.|...+|+-...+|
T Consensus       197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg  276 (735)
T KOG3626|consen  197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG  276 (735)
T ss_pred             hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence                  0                                01256789999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHhhHHHHHHhhc-------------------CchhHHHHHHHHHHHHHHHHhhccccCCCCCCCCChh
Q 016338          112 ICMGGFHLGNVVGLLLTPIMLSTI-------------------GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKS  172 (391)
Q Consensus       112 ~~~~~~~lg~~~g~~~~~~l~~~~-------------------gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (391)
                      +..+...+|.++|-++++++...+                   .|..-|++.+.+.++..+..+++.++.|+..++...+
T Consensus       277 i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~  356 (735)
T KOG3626|consen  277 ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRAR  356 (735)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhh
Confidence            999999999999999999886521                   2778899999999999999888877777655432222


Q ss_pred             HHHHHHcCCC-cccc-------cCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhh
Q 016338          173 ELRLIQAGKS-DSVK-------KRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAV  244 (391)
Q Consensus       173 ~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  244 (391)
                      +.+..+++.+ .++.       +...+..+++++||.+....+...+....+.++.+|+|-|+++++|.++..+..+...
T Consensus       357 ~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~  436 (735)
T KOG3626|consen  357 DLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGS  436 (735)
T ss_pred             hhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhh
Confidence            2211111111 0111       1223456788999999999999999999999999999999999999999999999876


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHhh
Q 016338          245 PWG-TMAVSGYMAGKASDSLIKA  266 (391)
Q Consensus       245 ~~~-~~~~~~~~~g~l~dr~~~~  266 (391)
                      ..+ +..+|.+++|++.+|+.-+
T Consensus       437 i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  437 IGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             hhhhhhhhhhhccceeeeeeccc
Confidence            665 5667789999999998644

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.81  E-value=5.5e-17  Score=145.02  Aligned_cols=379  Identities=15%  Similarity=0.124  Sum_probs=236.2

Q ss_pred             hhhHHHHhC----CChhhHHHHHHHHHHHHHHHHHhhhhhhhhc-CchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHH
Q 016338            5 VVPLAAKFG----WSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVR   79 (391)
Q Consensus         5 ~~~i~~~~~----~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r   79 (391)
                      .-.+..+++    .|+++..-+.+.|..-.-+...++|+++||+ |+|+++..+.++..+|.++.+.....+...+.++-
T Consensus        45 ~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L  124 (498)
T COG3104          45 ILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGL  124 (498)
T ss_pred             HHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence            344555666    9999998888888888888999999999997 99999999999999999998432113678889999


Q ss_pred             HHHHhhhhchhhhHHHHhhhhcCcc--chhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhh
Q 016338           80 AFFGLAEGVAMPAMSTLTSRWFPSH--ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  157 (391)
                      .+.++|.|..-+...++++|.+|++  +|-..+++...+.++|..++|.+.+++.++.||...|...++-.....+..+.
T Consensus       125 ~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~  204 (498)
T COG3104         125 ALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL  204 (498)
T ss_pred             HHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999865  37788999999999999999999999999999999999988777766555544


Q ss_pred             ccccC---CCCCCCCChhHHHHH-----------Hc----CCCcc-------------------cccCCCccHHHhhcCC
Q 016338          158 KVTND---PCNSPFVSKSELRLI-----------QA----GKSDS-------------------VKKRNPPSLRHLLSKL  200 (391)
Q Consensus       158 ~~~~~---~~~~~~~~~~~~~~~-----------~~----~~~~~-------------------~~~~~~~~~~~~~~~~  200 (391)
                      ..+..   +..++..+.+.....           ..    ....+                   +..+.++...|.-|-.
T Consensus       205 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~  284 (498)
T COG3104         205 GRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLL  284 (498)
T ss_pred             ccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH
Confidence            33221   111111111000000           00    00000                   0000000001100001


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCC----cchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 016338          201 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN----LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKI  276 (391)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~  276 (391)
                      ....+.+.....+..+....+.+..|.++..+.+    ....++..+...+.-++..++..++..|.++++.....-.|.
T Consensus       285 ~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KF  364 (498)
T COG3104         285 AAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKF  364 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHH
Confidence            1222333333344444444455555555432222    234566777777888888888888888876654333333444


Q ss_pred             HHHHHhHhhHHHHHHhh---cC-----CchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHH
Q 016338          277 MQSIGFIGPGVSLLCLN---YA-----KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAI  347 (391)
Q Consensus       277 ~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~  347 (391)
                      .+...+..++...+...   ..     .+.++.+....+.....-+..|.-.+++....| ...+.++++.-.....++.
T Consensus       365 alGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~  444 (498)
T COG3104         365 ALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQT  444 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            43333333333222222   11     133444555555566666666766666666666 6778888877777666777


Q ss_pred             HHHHHhhH------hhccccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          348 ISTIGTGY------FVQWLGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       348 i~~~~~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      ++..+.+.      ..+... ....|+..+...++..+.....
T Consensus       445 l~g~va~~~~~~~~~~~~~~-~~~~F~~~g~v~i~~~~~~~~~  486 (498)
T COG3104         445 LGGQVAGLTAVTDPAYTAFI-EGRVFGTIGVVAIVIGILLLLL  486 (498)
T ss_pred             hhceecccccccchhhhhhh-hhhhHHHHHHHHHHHHHHHHHh
Confidence            66666663      222333 5566777666666555554433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.74  E-value=1.8e-16  Score=143.20  Aligned_cols=362  Identities=16%  Similarity=0.148  Sum_probs=228.5

Q ss_pred             HhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCc-hHHHHHHHHHHHHHHhhh-hhhh-cc-chHHHHHHHHHHHhhh
Q 016338           11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGG-KKVLAWGVALWSLSTLLT-PWAA-TH-STASLLAVRAFFGLAE   86 (391)
Q Consensus        11 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~-~~a~-~~-~~~~~~~~r~l~G~g~   86 (391)
                      |.+.+.+..|++.++..++.+++++..|.+..|.+. |+.++.+.++..+|+++. ++.. .+ .-+.++++|++.|+|.
T Consensus        65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~  144 (488)
T KOG2325|consen   65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV  144 (488)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence            577888899999999999999999999999999987 899999999999999998 3332 23 6788899999999998


Q ss_pred             hchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh--cC-----------chhHHHHHHHHHHHHHH
Q 016338           87 GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--IG-----------ISGPFILFSSLGLLWLS  153 (391)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~--~g-----------wr~~f~~~~~~~~~~~~  153 (391)
                      +.. ....+++++....++|.|+++....+..+|..+||.++..+..-  -|           +..+-++.+++.++..+
T Consensus       145 ~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v  223 (488)
T KOG2325|consen  145 GNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIV  223 (488)
T ss_pred             ccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHH
Confidence            776 67799999988889999999999999999999999988776531  11           23466777777777777


Q ss_pred             HHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCC
Q 016338          154 TWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNV  233 (391)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  233 (391)
                      ......+|.+++..+.++++.  .+++.+.++.+..+.++      +..+.+.+..+...+.+....+..+......+++
T Consensus       224 ~i~~~f~E~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~------~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w  295 (488)
T KOG2325|consen  224 IILFFFKEVYRGIIDKKKRSV--EEEKSDIEKVKKPKLDW------VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGW  295 (488)
T ss_pred             HHHhheeecccCccccccccc--hhhccchhhhccCChhH------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhcc
Confidence            777777777655433221111  01111111111111111      1234455556666666666667777777777888


Q ss_pred             CcchhhHHhhhHH-HHHHHHH-HHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHH-Hhhc--CCch----------
Q 016338          234 NLKQAAWFSAVPW-GTMAVSG-YMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLL-CLNY--AKSP----------  298 (391)
Q Consensus       234 ~~~~~~~~~~~~~-~~~~~~~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~----------  298 (391)
                      +.+++-...+... +.+.+.. +...+..-|+++...     |+.+...+........+ ....  ...+          
T Consensus       296 ~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~-----r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~  370 (488)
T KOG2325|consen  296 TGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDK-----RRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAG  370 (488)
T ss_pred             ccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-----ceeeeehHHHHHHhhheeeeeccccccccccccccccC
Confidence            7766554443322 2222222 222333333332100     22222221222211111 1111  0000          


Q ss_pred             -------h------HHHHHHHHH-HHhhhhccc-----chhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 016338          299 -------A------VAAVLITIA-LSLSSFSQA-----GYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW  359 (391)
Q Consensus       299 -------~------~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~  359 (391)
                             |      ....+..+. ....+...|     ....+.+.+.|+++++++|........+..++|.+...+...
T Consensus       371 ~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~  450 (488)
T KOG2325|consen  371 CDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL  450 (488)
T ss_pred             cCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh
Confidence                   0      000111111 111111222     334445557789999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhccC
Q 016338          360 LGSFQAFLTVTAGLYFVTTIFWNLYSTG  387 (391)
Q Consensus       360 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (391)
                      .| +++.+.+..+..++...++....++
T Consensus       451 ~g-~~~v~~~~~~~~l~~~~l~~~~~~r  477 (488)
T KOG2325|consen  451 SG-PRPVWIILLCLLLVVAALWIVFLKR  477 (488)
T ss_pred             cC-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88 8888777777777766666554443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.74  E-value=2.5e-16  Score=144.28  Aligned_cols=316  Identities=18%  Similarity=0.143  Sum_probs=229.0

Q ss_pred             HHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhh--chhhhHHHHhhhhcCcc
Q 016338           27 LWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEG--VAMPAMSTLTSRWFPSH  104 (391)
Q Consensus        27 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~--~~~~~~~~~i~~~~~~~  104 (391)
                      .+...+.++..|.++||+|||..+.+......+..+...+   +.+|.++    +.|+..+  .......++++|....+
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~---~~~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF---QGYWFFL----LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH---HHHHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence            6777889999999999999999999999998888887744   3344333    4444433  45577788999999999


Q ss_pred             chhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcc
Q 016338          105 ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDS  184 (391)
Q Consensus       105 ~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (391)
                      +|...+|+.+.....+..++|.+++.+.+..|.-.+|.+..+..++..+.....+||+..++++...+..+.........
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~  224 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSS  224 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccch
Confidence            99999999999999999999999999999999999999999999999898888999876554332100000000000000


Q ss_pred             cccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHH-hhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHH-HHHHH
Q 016338          185 VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLS-WMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAG-KASDS  262 (391)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr  262 (391)
                      ...+..+..++.-.+|..+.+++..+........-.. ..+.|++..+++++++.+.+.+.......+++.+.. .+...
T Consensus       225 ~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~  304 (463)
T KOG2816|consen  225 HVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI  304 (463)
T ss_pred             hhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111222222345566656555555554443333 557788888999999999999888998989887666 67777


Q ss_pred             HHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhh-hccccchhHHHHHHHHH
Q 016338          263 LIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ-EIAPDCAGFLHGIANSA  341 (391)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~  341 (391)
                      ++.+         ..+..++..-.+......+..+.|..+....+....... .+...+... ...++++|++.++...+
T Consensus       305 l~~~---------~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~-~pa~~s~~s~~v~~~e~g~v~~~is~i  374 (463)
T KOG2816|consen  305 LGEK---------RLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIV-FPAIRAFASILVSPEEQGKVFGIISGI  374 (463)
T ss_pred             Hhhh---------hHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcch-hHHHHhHHHhhcccccccchhhHHHHH
Confidence            7754         377788888888888888888877766665555444433 344444444 45569999999999999


Q ss_pred             HHHHHHHHHHHhhHhhcc
Q 016338          342 GTLAAIISTIGTGYFVQW  359 (391)
Q Consensus       342 ~~~g~~i~~~~~g~l~~~  359 (391)
                      ..+...++|.+.+.+...
T Consensus       375 ~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  375 EGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             HHHhhhhhHHHHHHHHHH
Confidence            999999999999988654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.70  E-value=3.1e-15  Score=138.03  Aligned_cols=376  Identities=15%  Similarity=0.093  Sum_probs=227.6

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcC-----chHHHHHHHHHHHHHHhhhhhhh--ccchHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYG-----GKKVLAWGVALWSLSTLLTPWAA--THSTASL   75 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~~~~~~~~~a~--~~~~~~~   75 (391)
                      +..|.+++++|+|+++.....+...+...+ .++.|.++|.+.     ||+-++++.++..++....+...  ..+....
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~   89 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA   89 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence            346788999999999999999999988765 789999999863     55667777777765555553321  2356666


Q ss_pred             HHHHHHHHhhhhchhhhHHHHhhhhcC--ccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 016338           76 LAVRAFFGLAEGVAMPAMSTLTSRWFP--SHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLS  153 (391)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~--~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  153 (391)
                      .+.-++.-+|.......+-+++.|...  +++||...+.......+|.+++..++|.+.+..++|..|.+.+++..+..+
T Consensus        90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~  169 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI  169 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence            777788889999999999999999873  334788888888999999999999999999999999999999888887777


Q ss_pred             HHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHH-HHHHHHHHHHHHHHhhHHHHHhhhC
Q 016338          154 TWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVII-ANITNNWGYFVLLSWMPIYFNTVFN  232 (391)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g  232 (391)
                      ......+|.++.++. +.......+.+......++.....++.+++|.+|...+ ..++............-.+..+..+
T Consensus       170 ~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~  248 (433)
T PF03092_consen  170 VALFLLEERKVRPAD-EVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALG  248 (433)
T ss_pred             HHHHhhhhccccccc-hhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEecccc
Confidence            767666662221111 00000000000000001223345667777888877665 2222222111110100011223344


Q ss_pred             ---CCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc---------CCchhH
Q 016338          233 ---VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY---------AKSPAV  300 (391)
Q Consensus       233 ---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  300 (391)
                         +|+...+.+..+..++..+|..+..+...+..-        |+.......+.....+.-...         .++.+.
T Consensus       249 gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~--------R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f  320 (433)
T PF03092_consen  249 GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSW--------RRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWF  320 (433)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEE
Confidence               777777776655555555555555444333321        333333222222222211111         111122


Q ss_pred             HHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccc-------hhHHHHHHHH
Q 016338          301 AAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS-------FQAFLTVTAG  372 (391)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~-------~~~~~~~~~~  372 (391)
                      ...-..+.-...............+..| ...|+.+++..++.++|..++..++..+.+..|-       .....++..+
T Consensus       321 ~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~  400 (433)
T PF03092_consen  321 ALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSV  400 (433)
T ss_pred             EEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHH
Confidence            2222333333333334444455566666 7899999999999999999999999998876551       3444555555


Q ss_pred             HHHHHHHHHHHhccCc
Q 016338          373 LYFVTTIFWNLYSTGE  388 (391)
Q Consensus       373 ~~~~~~~~~~~~~~~~  388 (391)
                      +.++...+..++.+++
T Consensus       401 ~~ll~l~ll~lLp~~~  416 (433)
T PF03092_consen  401 IQLLPLPLLFLLPPQK  416 (433)
T ss_pred             HHHHHHHHHHHcCCCc
Confidence            5555555554555543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.69  E-value=2.1e-16  Score=122.99  Aligned_cols=137  Identities=25%  Similarity=0.441  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHHHHhhhhcC
Q 016338           23 QSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFP  102 (391)
Q Consensus        23 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~  102 (391)
                      .+.+.++..+++++.|++.||+|||+.+..+.....++.+...+  .++++.+.+.+++.|++.+...+....++.|.+|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL--SSNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            34567788899999999999999999999999998888888744  4899999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338          103 SHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus       103 ~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      +++|++..++.+....+|..+++.+.+.+.+..+|++.+.+.+...++..+...+..||
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999999999999999888887777766666554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.68  E-value=6.9e-14  Score=121.04  Aligned_cols=239  Identities=15%  Similarity=0.116  Sum_probs=171.9

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHh
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~   84 (391)
                      +-.+-+++|.++.|++.+....+...++..++.|.++||+|||+.-+..+++.+++++..   .+++++.++++|++.|+
T Consensus        57 ~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k---~~~~~~~L~~GRvlgGi  133 (354)
T PF05631_consen   57 LYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK---HSSNYPVLLLGRVLGGI  133 (354)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---hccccHHHHHHHHHHHH
Confidence            334567899999999999999999999999999999999999999999999999999765   45999999999999999


Q ss_pred             hhhchhhhHHHHh-hhhc----CccchhhHHHHHH-hhhhhhHHHHhhHHHHHHhhcCc--hhHHHHHHHHHHHHHHHHh
Q 016338           85 AEGVAMPAMSTLT-SRWF----PSHERASAIGICM-GGFHLGNVVGLLLTPIMLSTIGI--SGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        85 g~~~~~~~~~~~i-~~~~----~~~~rg~~~~~~~-~~~~lg~~~g~~~~~~l~~~~gw--r~~f~~~~~~~~~~~~~~~  156 (391)
                      +.+..+..--+.. .|.-    |++..+.-++... ...++-.+.+.+++..+.+..+.  ..+|....+..++..++..
T Consensus       134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence            9998877776664 4432    3333344444333 23344455566666677776654  7789988887777777666


Q ss_pred             hccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHH-HhhHHHHHhhhCCCc
Q 016338          157 SKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL-SWMPIYFNTVFNVNL  235 (391)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~  235 (391)
                      ..-+|+..+..+..+. .+.            ....++.+.+||+++.+.+...+.-...+.+. .|.|..-.+.   +.
T Consensus       214 ~~W~ENyg~~~~~~~~-~~~------------~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~---~~  277 (354)
T PF05631_consen  214 KTWPENYGDTSSSSSL-SGS------------FREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDD---EE  277 (354)
T ss_pred             hcccccCCCcccccch-HHH------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCCC---CC
Confidence            6666655442211111 111            11246778889999998888888777776665 4566554221   23


Q ss_pred             chhhHHhhhHHHHHHHHHHHHHHHHHH
Q 016338          236 KQAAWFSAVPWGTMAVSGYMAGKASDS  262 (391)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~l~dr  262 (391)
                      ..-|++++.+.+..++|+.+..++..|
T Consensus       278 ~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  278 LPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            457899999999999999888766554

>TIGR00889 2A0110 nucleoside transporter

Probab=99.65  E-value=7.2e-15  Score=135.80  Aligned_cols=158  Identities=18%  Similarity=0.222  Sum_probs=133.2

Q ss_pred             hhHHHHhCCCh--------hhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhc--cchHHH
Q 016338            6 VPLAAKFGWSS--------SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT--HSTASL   75 (391)
Q Consensus         6 ~~i~~~~~~s~--------~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~--~~~~~~   75 (391)
                      |...++.|.++        ++.+...++..+...++.++.|+++||+|||+++.++.++..++..+......  ++++.+
T Consensus       232 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l  311 (418)
T TIGR00889       232 NGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALL  311 (418)
T ss_pred             HHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHH
Confidence            44555666443        66799999999999999999999999999999999999999888766644211  134667


Q ss_pred             HHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHH-hhhhhhHHHHhhHHHHHHhh------cCchhHHHHHHHHH
Q 016338           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICM-GGFHLGNVVGLLLTPIMLST------IGISGPFILFSSLG  148 (391)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~lg~~~g~~~~~~l~~~------~gwr~~f~~~~~~~  148 (391)
                      ++.+++.|++.+...+....++.|++|+|+|+++.++.+ ...++|..+||.++|.+.++      +||+..|.+.+++.
T Consensus       312 ~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~  391 (418)
T TIGR00889       312 FLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYI  391 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            788999999999888999999999999999999999997 67899999999999999987      46999999999998


Q ss_pred             HHHHHHHhhccccCC
Q 016338          149 LLWLSTWTSKVTNDP  163 (391)
Q Consensus       149 ~~~~~~~~~~~~~~~  163 (391)
                      ++..++.+++.+|+.
T Consensus       392 ~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       392 AILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHHhCCcc
Confidence            888888888877653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.59  E-value=4.2e-14  Score=130.45  Aligned_cols=155  Identities=20%  Similarity=0.209  Sum_probs=129.9

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHh
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~   84 (391)
                      +|...++.|.  ++.++..+.+.++..++.++.|++.||+|+|+.+..+..+..++.++..  ..++.+.+++.+++.|+
T Consensus       239 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~G~  314 (399)
T PRK05122        239 ITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW--LAPSPWMALIGAALTGF  314 (399)
T ss_pred             HHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHH
Confidence            3444455555  3456777888899999999999999999999999998888888877763  34788888889999999


Q ss_pred             hhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCC
Q 016338           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDP  163 (391)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  163 (391)
                      +.+...+.....+.|..|+++|+++.++.+....+|..+++.+.+.+.+..||+..|.+.+.+.++..+..+...+++|
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        315 GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9998888888888899999999999999999999999999999999999999999999988888777666665544444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.58  E-value=1.7e-13  Score=129.55  Aligned_cols=161  Identities=13%  Similarity=0.164  Sum_probs=122.0

Q ss_pred             hhhH-HHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhh-hhhhhccchHHHHHHHHHH
Q 016338            5 VVPL-AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLL-TPWAATHSTASLLAVRAFF   82 (391)
Q Consensus         5 ~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~r~l~   82 (391)
                      +|.+ ++++|.+..+.++..+...++..++.+..|+++||+|||+.+..+.++..++... .....+++...+++++++.
T Consensus       273 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (490)
T PRK10642        273 MPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLML  352 (490)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            4554 4567999888888888899999999999999999999999988887654433322 2112335677788899999


Q ss_pred             HhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc-CchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      |++.+........++.|.+|++.|+++++........+..++|.+.+++.+.. +|+.+++...+.+++..+..+ +.||
T Consensus       353 g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pe  431 (490)
T PRK10642        353 AVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKE  431 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-Hhcc
Confidence            98877777777888899999999999999855556666788899988887765 478777776666665555444 4588


Q ss_pred             CCCCC
Q 016338          162 DPCNS  166 (391)
Q Consensus       162 ~~~~~  166 (391)
                      +|++.
T Consensus       432 s~~~~  436 (490)
T PRK10642        432 TANRP  436 (490)
T ss_pred             ccCCC
Confidence            87653

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.57  E-value=6.4e-14  Score=129.97  Aligned_cols=161  Identities=12%  Similarity=-0.004  Sum_probs=137.9

Q ss_pred             chhhHHHH-hCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHH
Q 016338            4 AVVPLAAK-FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (391)
Q Consensus         4 ~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~   82 (391)
                      ..|.+.++ +|.++.+.|++.+...++..++.++.+++.||.++|+.+..+..+..++.++.  ...++.+...+..++.
T Consensus       245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  322 (417)
T PRK10489        245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLF--GLMPMWILAVLCLALF  322 (417)
T ss_pred             hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHH--HccchHHHHHHHHHHH
Confidence            45666666 89999999999999999999999999999999888888888888877777766  3447887788889999


Q ss_pred             HhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccC
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~  162 (391)
                      |++.+...+...+++.|..|+|+||+++++++....+|..+|+.+.|.+.+..|.+..+...+...++..++.....++.
T Consensus       323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (417)
T PRK10489        323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL  402 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            99988877888899999999999999999999999999999999999999999999999988888777666666666665


Q ss_pred             CCCC
Q 016338          163 PCNS  166 (391)
Q Consensus       163 ~~~~  166 (391)
                      ++.+
T Consensus       403 ~~~~  406 (417)
T PRK10489        403 RRFR  406 (417)
T ss_pred             cccc
Confidence            5433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.57  E-value=4.5e-14  Score=131.05  Aligned_cols=149  Identities=11%  Similarity=0.160  Sum_probs=129.2

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhh
Q 016338           13 GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPA   92 (391)
Q Consensus        13 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~   92 (391)
                      +.+..+.|++.++..++..++.++.|++.||+|||+.+..+..+.+++.++.++  +++.+.++..+++.|++.+...+.
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF--ATGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHH
Confidence            566778999999999999999999999999999999999999988888888754  488888999999999998888888


Q ss_pred             HHHHhhhhcCccchhhHHHH-HHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCC
Q 016338           93 MSTLTSRWFPSHERASAIGI-CMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDP  163 (391)
Q Consensus        93 ~~~~i~~~~~~~~rg~~~~~-~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  163 (391)
                      ...++.|.+|++.|+...+. .+....+|..+++.+.|++.+..|||..|.+.+++.++..++.++..++++
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            88999999999988887655 677889999999999999999999999999988888776666666555433

>PRK10054 putative transporter; Provisional

Probab=99.56  E-value=2.7e-13  Score=124.62  Aligned_cols=173  Identities=8%  Similarity=0.053  Sum_probs=132.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 016338          199 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  278 (391)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  278 (391)
                      +|+++.+.+..++...+......++|.|+++++|+|+.+.++..+...+...++++..|+++||+|+|         ..+
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k---------~~~   76 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK---------RYM   76 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc---------hhH
Confidence            34577777888888888899999999999988999999999999999999999999999999999964         344


Q ss_pred             HHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhh
Q 016338          279 SIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV  357 (391)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~  357 (391)
                      ..+.....+....+...++.+.......+.........+.......|..| ++|+++.|+.+...++|..++|.+.+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         77 LLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555655555555555544443333333333445556666667665 78999999999999999999999999987


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHH
Q 016338          358 QWLGSFQAFLTVTAGLYFVTTIFWN  382 (391)
Q Consensus       358 ~~~g~~~~~~~~~~~~~~~~~~~~~  382 (391)
                      + .| ++..|...+++.++..+...
T Consensus       157 ~-~g-~~~~f~~~~~~~~i~~i~~~  179 (395)
T PRK10054        157 M-QS-INLPFWLAAICSAFPLVFIQ  179 (395)
T ss_pred             H-hc-cCcHHHHHHHHHHHHHHHHH
Confidence            5 46 88888888877777655443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.55  E-value=9.7e-14  Score=126.79  Aligned_cols=147  Identities=20%  Similarity=0.206  Sum_probs=125.9

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHh
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~   84 (391)
                      .+.+.+++|.++++.+++.+.+.++..+++++.|++.||+|||+.+.++..+..++.++..+....+...++...++.|+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  307 (377)
T TIGR00890       228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFF  307 (377)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Confidence            45566888999999999999999999999999999999999999999998888888877644311123334566788888


Q ss_pred             hhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHH
Q 016338           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLW  151 (391)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  151 (391)
                      +.+...+..+.++.|.+|+|+|+++.|+.+....+|..++|.+.+.+.++.||+..|.+.+++.++.
T Consensus       308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       308 TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            8888878888899999999999999999999999999999999999999999999999988776654

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.54  E-value=1.1e-13  Score=131.36  Aligned_cols=146  Identities=14%  Similarity=0.142  Sum_probs=115.0

Q ss_pred             chhhHH-HHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHH
Q 016338            4 AVVPLA-AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (391)
Q Consensus         4 ~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~   82 (391)
                      .+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+..+.......++.+.+....++.
T Consensus       297 ~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (496)
T PRK03893        297 LLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQ  376 (496)
T ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            356665 5899999999999999999999999999999999999999888877766655443222223444444555554


Q ss_pred             HhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHH
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL  149 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~  149 (391)
                      +.......+....++.|.+|+++|++.+++.+....+|..+||.+++.+.+.+||+..+...+....
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~  443 (496)
T PRK03893        377 QMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLT  443 (496)
T ss_pred             HHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence            4443344566778899999999999999999999999999999999999999999988866554433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.53  E-value=3.8e-13  Score=123.68  Aligned_cols=151  Identities=13%  Similarity=0.062  Sum_probs=124.6

Q ss_pred             hhh-HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHH
Q 016338            5 VVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (391)
Q Consensus         5 ~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G   83 (391)
                      .|. +++++|.++.+.+++.+...+...++.++.|+++||+|||+.+..+.....+.....  ...++.+.+++.+++.+
T Consensus       239 ~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~  316 (393)
T PRK15011        239 MPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM--LMAHSPAILLGLQLLNA  316 (393)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHH
Confidence            444 456789999999999888888888899999999999999998887766655554444  23477888888999998


Q ss_pred             hhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhc
Q 016338           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      ++.+...+....+..|..| ++|+++.++.+...++|..+++.+++.+.+.+||+..|.+.+++.++..+..++.
T Consensus       317 ~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        317 IYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            8888777777888899997 5699999999999999999999999999999999999998887777766655543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.53  E-value=3.1e-13  Score=122.17  Aligned_cols=151  Identities=31%  Similarity=0.438  Sum_probs=137.3

Q ss_pred             chhhHHHHh-CCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchH-HHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            4 AVVPLAAKF-GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKK-VLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         4 ~~~~i~~~~-~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ..|.+.++. |.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+....  .++.+...+..++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~  274 (352)
T cd06174         197 YLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL--APSLALLLVALLL  274 (352)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHH
Confidence            345555554 999999999999999999999999999999999999 999999999999888844  4888899999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHh
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  156 (391)
                      .|++.+...+....++.|..|+|+|++.+++.+...++|..+++.+.+.+.+..+|+..+.+.+++.++..+...
T Consensus       275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            999999999999999999999999999999999999999999999999999999999999999988887666544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.53  E-value=2.9e-13  Score=131.39  Aligned_cols=141  Identities=21%  Similarity=0.253  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHHHHhh
Q 016338           19 LGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTS   98 (391)
Q Consensus        19 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~   98 (391)
                      ..+...+..++..++.++.|+++||+|||+++.++.++.+++.++.+++  ++...+++.+++.|++.+..++...++++
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~--~s~~~ll~~~~l~g~~~~~~~~~~~a~~a  674 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG--NSESAMIALLCLFGGLSIAAWNALDVLTV  674 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677789999999999999999999999999999999998888544  77778888899999888888899999999


Q ss_pred             hhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCC
Q 016338           99 RWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDP  163 (391)
Q Consensus        99 ~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  163 (391)
                      |++|.++|++++|+.+....+|.+++|.+++.+.+. +...+|++.+++.++..++.. .+||+.
T Consensus       675 El~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~  737 (742)
T TIGR01299       675 ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTR  737 (742)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCc
Confidence            999999999999999999999999999999988764 456778887777776655555 446644

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.52  E-value=2.6e-13  Score=125.60  Aligned_cols=155  Identities=18%  Similarity=0.185  Sum_probs=128.4

Q ss_pred             hhhHHHHhCCChh----hHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHH
Q 016338            5 VVPLAAKFGWSSS----FLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (391)
Q Consensus         5 ~~~i~~~~~~s~~----~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~   80 (391)
                      .|...++.+.+..    ..+.+.+...++..++.+..|++.||+|||+.+..+..+..++.+...  ..++.+.+.+.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  319 (408)
T PRK09874        242 LTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS--FVQTPLQLGILRF  319 (408)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH--HhccHHHHHHHHH
Confidence            3444445433333    245666777888889999999999999999999999888777776663  3478888889999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      +.|++.+...+...+.+.+..|+++||+.+++.+....+|..+||.+++.+.+..||+..|.+.+++.++..+..++..+
T Consensus       320 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        320 LLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999888887776665443


Q ss_pred             c
Q 016338          161 N  161 (391)
Q Consensus       161 ~  161 (391)
                      +
T Consensus       400 ~  400 (408)
T PRK09874        400 R  400 (408)
T ss_pred             H
Confidence            3

>PRK12382 putative transporter; Provisional

Probab=99.52  E-value=4.8e-13  Score=123.11  Aligned_cols=151  Identities=21%  Similarity=0.244  Sum_probs=128.6

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHh
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~   84 (391)
                      .|...+|.+.+  +.++..+.+.++..+++++.|++.||+|+|+.+..+..+..++.++..  ..++.+.+.+..++.|+
T Consensus       239 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~  314 (392)
T PRK12382        239 VSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW--LAPTAWVALAGAALTGA  314 (392)
T ss_pred             HHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH--HcccHHHHHHHHHHHHH
Confidence            34455566654  356667778888899999999999999999999999988888887764  34788888889999999


Q ss_pred             hhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcc
Q 016338           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKV  159 (391)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  159 (391)
                      +.+...+...+.+.|.+|+|+|+++.++.+....+|..++|.+.+.+.++.||+..|.+.+.+.++..+..+...
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        315 GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            999888888889999999999999999999999999999999999999999999999999988877666655443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.52  E-value=4.9e-13  Score=123.66  Aligned_cols=151  Identities=24%  Similarity=0.193  Sum_probs=124.5

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHh
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~   84 (391)
                      .|.+.++.|.++.+.+...+...++..++.++.|++.||+|||+.+..+.....++.+..  ...++.+.+.+..++.|+
T Consensus       243 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~  320 (406)
T PRK11551        243 LPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL--AAAPSFAGMLLAGFAAGL  320 (406)
T ss_pred             HHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence            567778889999999999999999999999999999999999999888776666665555  334777777788888898


Q ss_pred             hhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC-chhHHHHHHHHHHHHHHHHhh
Q 016338           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~  157 (391)
                      +.+...+...+++.|.+|+++|++..++.+....+|..++|.+++.+.++.+ |...+.......++..+..++
T Consensus       321 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        321 FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            8887888889999999999999999999999999999999999999988754 555555555555444444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.51  E-value=3.2e-13  Score=127.00  Aligned_cols=152  Identities=17%  Similarity=0.102  Sum_probs=116.9

Q ss_pred             hhh-HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHH
Q 016338            5 VVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (391)
Q Consensus         5 ~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G   83 (391)
                      +|. +++++|.|..+.++..+...++..++.+..|+++||+|||+.+.....+..++..+..+...++.+...+.+++.|
T Consensus       281 ~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  360 (467)
T PRK09556        281 SPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALG  360 (467)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            454 5567999999999999999999999999999999999999887765544444332222233356666778888888


Q ss_pred             hhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhh-hHHHHhhHHHHHHh------------hcCchhHHHHHHHHHHH
Q 016338           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHL-GNVVGLLLTPIMLS------------TIGISGPFILFSSLGLL  150 (391)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~l-g~~~g~~~~~~l~~------------~~gwr~~f~~~~~~~~~  150 (391)
                      +..............|.+|+|+||.+.|+.+...++ |..++|.+.|.+.+            ..||+..|.+..+..++
T Consensus       361 ~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~  440 (467)
T PRK09556        361 FLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIG  440 (467)
T ss_pred             HHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHH
Confidence            654333333346677999999999999999999886 77999999999999            57899999988777766


Q ss_pred             HHHHHh
Q 016338          151 WLSTWT  156 (391)
Q Consensus       151 ~~~~~~  156 (391)
                      ..+..+
T Consensus       441 ~~~~~~  446 (467)
T PRK09556        441 CICLMA  446 (467)
T ss_pred             HHHHHH
Confidence            554444

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.51  E-value=5.2e-13  Score=124.41  Aligned_cols=169  Identities=14%  Similarity=0.150  Sum_probs=130.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 016338          201 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  280 (391)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  280 (391)
                      .++...+.++..+.....+..+.|.+.++ +|.|..+.+++.+...++..+++++.|++.||+|+|         ..+..
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r---------~~~~~   93 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR---------YFMGI   93 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc---------hhHHH
Confidence            33444555555555556777888888877 899999999999999999999999999999999954         45567


Q ss_pred             HhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 016338          281 GFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW  359 (391)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~  359 (391)
                      +.+...++.+.....++.+......++.+...+...+.......+..| ++|++++|+.+....+|..++|.+.+.+.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  173 (434)
T PRK11663         94 GLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH  173 (434)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            777777777776666666555544444444445556666777778777 7899999999999999999999999999998


Q ss_pred             ccchhHHHHHHHHHHHHHHHH
Q 016338          360 LGSFQAFLTVTAGLYFVTTIF  380 (391)
Q Consensus       360 ~g~~~~~~~~~~~~~~~~~~~  380 (391)
                      .| ++..|.+.++..++..+.
T Consensus       174 ~g-w~~~f~~~~i~~~~~~~~  193 (434)
T PRK11663        174 YG-WRYGMMIAGIIAIVVGLF  193 (434)
T ss_pred             cc-HHHHHHHHHHHHHHHHHH
Confidence            88 899988877665544433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.51  E-value=1.6e-12  Score=122.02  Aligned_cols=175  Identities=11%  Similarity=0.042  Sum_probs=137.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHhh--hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHH-HHhhccchhHHHHHH
Q 016338          201 PSWTVIIANITNNWGYFVLLSWMPIYFNTV--FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDS-LIKAGYSLTLVRKIM  277 (391)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~  277 (391)
                      .++.+.+..++..+.+++...++|.|++++  +|++..+++...+...++..++.+++|+++|| +|+         |..
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~---------~~~   81 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGT---------KKT   81 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcch---------HHH
Confidence            456666777777899999999999999987  89999999999999999999999999999999 784         456


Q ss_pred             HHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-c---chhHHHHHHHHHHHHHHHHHHHHh
Q 016338          278 QSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D---CAGFLHGIANSAGTLAAIISTIGT  353 (391)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~g~~~~~~~~g~~i~~~~~  353 (391)
                      +..+.....++...+...++.........+.+...+...+.......+..| +   +|+++.++.+...++|..++|.+.
T Consensus        82 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~  161 (475)
T TIGR00924        82 MVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLA  161 (475)
T ss_pred             HHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHH
Confidence            667777777777777666555444444444444445566677777777666 3   388899999999999999999999


Q ss_pred             hHhhccccchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          354 GYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       354 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      +.+.++.| |+..|...++..+++.+.+...+
T Consensus       162 g~l~~~~g-~~~~f~~~~~~~~~~~l~~~~~~  192 (475)
T TIGR00924       162 GVIAENYG-YHVGFNLAAVGMVIGLLTFFAGR  192 (475)
T ss_pred             HHHHHhcC-hHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999888 99999888877666665554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.50  E-value=1.2e-12  Score=119.82  Aligned_cols=149  Identities=17%  Similarity=0.203  Sum_probs=125.2

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHH
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G   83 (391)
                      .+|.+.++.|.++++.+++.+...++..+++++.|++.||+|+|+.+..+..+..++.+..  .  ++ .......++.|
T Consensus       222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~--~--~~-~~~~~~~~l~g  296 (381)
T PRK03633        222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM--L--SQ-AAMAPALFILG  296 (381)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH--h--hh-HHHHHHHHHHH
Confidence            3577777889999999999999999999999999999999999999988888877766544  2  22 23445677888


Q ss_pred             hhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhh
Q 016338           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  157 (391)
                      ++.....|...+.+.|..|+++++...+......++|..+||.++|.+.|+.||++.|.+.+...++..+..++
T Consensus       297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            87777789999999999988888888888888999999999999999999999999999988888766554443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.50  E-value=1e-10  Score=104.39  Aligned_cols=334  Identities=12%  Similarity=0.024  Sum_probs=224.9

Q ss_pred             hhhHHHH-hCCChhhHH-HHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHH
Q 016338            5 VVPLAAK-FGWSSSFLG-IVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (391)
Q Consensus         5 ~~~i~~~-~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~   82 (391)
                      .|.+.+. .|.+.+|+. -+.-+..=.+....++...+.|..+.|++++++.+...+...+.  .+.++...+-+..+.-
T Consensus        27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~ll--l~~~sv~~mq~~q~~y  104 (412)
T PF01770_consen   27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLL--LFGTSVLAMQLMQFFY  104 (412)
T ss_pred             hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--HHHCcHHHHHHHHHHH
Confidence            3444444 788888764 45556666778888999999999999999999999988888887  4459999999999999


Q ss_pred             HhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc--CchhHHHHHHHHHHHHHHHHhhccc
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI--GISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      |++.+. ..+..+++-...|+++-.++.+...+..-+|-.++.++|..+...-  +.+...++......+..+ ..+++|
T Consensus       105 g~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~-~~~fLP  182 (412)
T PF01770_consen  105 GLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALL-IALFLP  182 (412)
T ss_pred             HHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHcC
Confidence            999876 4778899988899999999999999999999999999998877633  344444443333333333 333445


Q ss_pred             cCCCCC---CCCC------hhHHHHHHcCCCc-----ccccC-----------CCccHHHhhcCCchHHHHHHHHHHHHH
Q 016338          161 NDPCNS---PFVS------KSELRLIQAGKSD-----SVKKR-----------NPPSLRHLLSKLPSWTVIIANITNNWG  215 (391)
Q Consensus       161 ~~~~~~---~~~~------~~~~~~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (391)
                      ..+++.   +..+      +.+.+..++..++     ++++.           ..+++++..++|.++...+-+.+...+
T Consensus       183 ~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcg  262 (412)
T PF01770_consen  183 MPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCG  262 (412)
T ss_pred             CCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhH
Confidence            544321   1100      0000000000000     00000           013455667889999999999999999


Q ss_pred             HHHHHHhhHHHHHhh--hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhh
Q 016338          216 YFVLLSWMPIYFNTV--FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN  293 (391)
Q Consensus       216 ~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (391)
                      +..+.+|.-...++.  -+-+..-.|..-+...+.+.++.+..|++..++.+.       ....+.....+.+..++++.
T Consensus       263 y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L~lm~  335 (412)
T PF01770_consen  263 YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLLFLMS  335 (412)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            998888888777774  123333457777777788888889999986666543       44555555666677777777


Q ss_pred             cCCchhHHHHHHHHHHHhhhhcccchh-hhhhhccccchhHHHHHHHHHHHHHHHHH
Q 016338          294 YAKSPAVAAVLITIALSLSSFSQAGYL-LNIQEIAPDCAGFLHGIANSAGTLAAIIS  349 (391)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~g~~i~  349 (391)
                      ..++.+......++.........+... -+......|.-+...|+.+....+-..+-
T Consensus       336 ~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtil  392 (412)
T PF01770_consen  336 FTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTIL  392 (412)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHhe
Confidence            877877777766655555444433333 33444445777888888777665544443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.49  E-value=3.7e-12  Score=120.32  Aligned_cols=178  Identities=9%  Similarity=0.079  Sum_probs=129.8

Q ss_pred             HHhhcCCc-hHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHH-HHhhccchh
Q 016338          194 RHLLSKLP-SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDS-LIKAGYSLT  271 (391)
Q Consensus       194 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~  271 (391)
                      .+.+|+|+ ++......++..+.++....+++.|+++++|++..+++..............+++|++.|| +|+|     
T Consensus        14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r-----   88 (500)
T PRK09584         14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK-----   88 (500)
T ss_pred             hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----
Confidence            34557764 8888888889999999999999999998899999988887776665555556789999999 5854     


Q ss_pred             HHHHHHHHHHhHhhHHHHHHhhcCCc-hhHHHHHHHHHHHhhhhcccchhhhhhhccc-c--chhHHHHHHHHHHHHHHH
Q 016338          272 LVRKIMQSIGFIGPGVSLLCLNYAKS-PAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D--CAGFLHGIANSAGTLAAI  347 (391)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~g~~~~~~~~g~~  347 (391)
                          ..+..+..+..++.......++ .........+.+...+...+.......+.+| +  ++..+.++.+...++|..
T Consensus        89 ----~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~  164 (500)
T PRK09584         89 ----RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSF  164 (500)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHH
Confidence                4555666666666555555432 2333333333334445555666677777766 3  345678888999999999


Q ss_pred             HHHHHhhHhhccccchhHHHHHHHHHHHHHHHHH
Q 016338          348 ISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFW  381 (391)
Q Consensus       348 i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (391)
                      ++|.+.|++.|+.| |+..|.+.++...++.+.+
T Consensus       165 ~gp~i~g~l~~~~g-~~~~F~i~~i~~~i~~i~~  197 (500)
T PRK09584        165 FSMLATPWLAAKYG-WSVAFALSVVGMLITVVNF  197 (500)
T ss_pred             HHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999888 9999988876666655443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.49  E-value=1.9e-12  Score=120.01  Aligned_cols=175  Identities=11%  Similarity=0.130  Sum_probs=132.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHH-HhhccchhHHHHHHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL-IKAGYSLTLVRKIMQ  278 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~~  278 (391)
                      +.++......+...+.++++..++|.|+++.+|+++.+++.+.........++.+++|+++||+ |+|         ..+
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr---------r~i   79 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR---------MAV   79 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH---------HHH
Confidence            4566777777888889999999999999998999999999999999999999999999999999 854         444


Q ss_pred             HHHhHhhHHHHHHhhcCC-chhHHHHHHHHHHHhhhhcccchhhhhhhccc-c--chhHHHHHHHHHHHHHHHHHHHHhh
Q 016338          279 SIGFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D--CAGFLHGIANSAGTLAAIISTIGTG  354 (391)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~g~~~~~~~~g~~i~~~~~g  354 (391)
                      ..+.+...++...+...+ +.........+.....+...+...++..|.+| +  +|.++.++.+...++|+.++|.+.|
T Consensus        80 liG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g  159 (493)
T PRK15462         80 MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG  159 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH
Confidence            566666666554444322 11222222222222334445666777888777 3  6999999999999999999999999


Q ss_pred             HhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          355 YFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       355 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      ++.+..| |+..|...++..+++.+.+...
T Consensus       160 ~L~~~~G-w~~~F~iaaigm~l~li~~~~~  188 (493)
T PRK15462        160 YAQEEYS-WAMGFGLAAVGMIAGLVIFLCG  188 (493)
T ss_pred             HHHhhhC-hHHHHHHHHHHHHHHHHHHHHh
Confidence            9999888 9999988877777766665543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.49  E-value=2.5e-12  Score=118.37  Aligned_cols=170  Identities=13%  Similarity=0.146  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHh
Q 016338          203 WTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGF  282 (391)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  282 (391)
                      +......++...+.+....++|.|+++++|.|+.+.|+..+...+...+.+++.|+++||+++         |..+..+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~---------k~~l~~~~   83 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGA---------KPMIVTGM   83 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCc---------hHHHHHHH
Confidence            445577777888888888999999988899999999999999999999999999999999995         45556677


Q ss_pred             HhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          283 IGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      ....+........++.+.......+.+...+...+...+...+..| |+|+++.|+.+...++|..++|.+.|.+. ..|
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g  162 (400)
T PRK11646         84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD  162 (400)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence            7777776666666666555554444444445555666666777665 89999999999999999999999999998 556


Q ss_pred             chhHHHHHHHHHHHHHHHHHHH
Q 016338          362 SFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                       ++..|++.+...++..++...
T Consensus       163 -~~~~f~~~~~~~~~~~i~~~~  183 (400)
T PRK11646        163 -FRLVCATGAVLFVLAAAFNAW  183 (400)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHH
Confidence             888888887776666544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.49  E-value=1.6e-13  Score=128.46  Aligned_cols=147  Identities=17%  Similarity=0.109  Sum_probs=121.5

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhc--CchHHHHHH--HHHHHHHHhhhhhhhccchHHHHHHHH
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY--GGKKVLAWG--VALWSLSTLLTPWAATHSTASLLAVRA   80 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~r~   80 (391)
                      +|.+.+++|.+..+.+++.+...++..+++++.|+++||.  ++|+...++  ..+.+++.++.  ...++++.+++.++
T Consensus       264 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~~~~~~~i~~~  341 (455)
T TIGR00892       264 LVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLC--ALAGDYTGLVIYCI  341 (455)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH--HHhchHHHHHHHHH
Confidence            4666778899999999999999999999999999999984  344433333  33334444444  34488888999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc-CchhHHHHHHHHHHHHHH
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLS  153 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~  153 (391)
                      +.|++.+...+...+++.|.+|++++++.+++.+...++|..+||.+++.+.+.. +|+..|++.+++.++..+
T Consensus       342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            9999999998999999999999999999999999999999999999999998877 599999998877665444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.49  E-value=1.6e-12  Score=119.46  Aligned_cols=152  Identities=22%  Similarity=0.161  Sum_probs=124.0

Q ss_pred             hhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhh
Q 016338            6 VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLA   85 (391)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g   85 (391)
                      |.+.+++|.|..+.+++.+...++..+++++.|++.||+|||+.. .+..+...+..... ...++.+.+.+..++.|++
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~-~~~~~~~~~~~~~~l~g~~  307 (390)
T PRK03545        230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLL-PAANSEWHLSVLSIFWGIA  307 (390)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHH
Confidence            345556899999999999999999999999999999999988654 44444444433221 2347778888889999999


Q ss_pred             hhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccc
Q 016338           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (391)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  160 (391)
                      .+...+.....+.|..| ++|++++++.+....+|..+||.++|.+.+++|+|..|.+.+.+.++..+......+
T Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            87777777888888876 688999999999999999999999999999999999999999888887776666554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.48  E-value=1.7e-12  Score=118.64  Aligned_cols=147  Identities=12%  Similarity=0.093  Sum_probs=124.4

Q ss_pred             HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhh
Q 016338            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEG   87 (391)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~   87 (391)
                      +.+++|.++.+.+++.+.......++.++.|++.||+|||+.+.++..+..+.....  ...++.+.+.+.+++.|++.+
T Consensus       226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g  303 (375)
T TIGR00899       226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGL--AADNSLWALLMLQLLNAIFIG  303 (375)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            457789999999999888888888889999999999999999988877666555444  334778888888999999998


Q ss_pred             chhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhh
Q 016338           88 VAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  157 (391)
                      ...+....++.|..| ++++++.++.+....+|..++|.+++.+.+..||+..|.+.++..++..+...+
T Consensus       304 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       304 ILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            888888899999987 467799999999999999999999999999999999999988887776665443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.48  E-value=5.3e-13  Score=117.02  Aligned_cols=179  Identities=13%  Similarity=0.090  Sum_probs=152.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  279 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  279 (391)
                      +.+....+.+...++.--.+..-.|...++ .++|.++.|.+.+.+.+...++..+.|.++||.+.|         ..+.
T Consensus        29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr---------~fm~   98 (448)
T COG2271          29 QIFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR---------YFMA   98 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc---------eeeh
Confidence            345556666777777777777777777666 789999999999999999999999999999999854         6778


Q ss_pred             HHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHh--hHh
Q 016338          280 IGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT--GYF  356 (391)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~--g~l  356 (391)
                      +++++.++..+++++.++.....++..+.+.+.+...|.....+..-+| ++||+..++-|+..++|+.+.|++.  +.+
T Consensus        99 ~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~  178 (448)
T COG2271          99 FGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF  178 (448)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence            8999999999999999888888888888888888888888888887777 8999999999999999999999999  888


Q ss_pred             hccccchhHHHHHHHHHHHHHHHHHHHhccCcc
Q 016338          357 VQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER  389 (391)
Q Consensus       357 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (391)
                      .++.+ ++..|++-+++.++..+..+...|+++
T Consensus       179 ~~~~~-w~~~f~~pgiiaiival~~~~~~rd~P  210 (448)
T COG2271         179 AFHGG-WRAAFYFPGIIAIIVALILLFLLRDRP  210 (448)
T ss_pred             Hhccc-hhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            88876 999999998888777777666655543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.47  E-value=9.5e-13  Score=124.26  Aligned_cols=160  Identities=21%  Similarity=0.217  Sum_probs=126.4

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhh---hhcc------chHH
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW---AATH------STAS   74 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---a~~~------~~~~   74 (391)
                      ..|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+.+++.++.++   ...+      +...
T Consensus       306 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (481)
T TIGR00879       306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVA  385 (481)
T ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHH
Confidence            357778889999988999999999999999999999999999999999998888777776642   1112      2222


Q ss_pred             HHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 016338           75 LLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST  154 (391)
Q Consensus        75 ~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  154 (391)
                      +....+..+.......+....++.|.+|+++|++++++.+...++|..++|.+.+.+.++.+|++.|++.++++++..+.
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~  465 (481)
T TIGR00879       386 IVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIF  465 (481)
T ss_pred             HHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHH
Confidence            33333333322223346667778999999999999999999999999999999999999999999999999888887777


Q ss_pred             HhhccccCC
Q 016338          155 WTSKVTNDP  163 (391)
Q Consensus       155 ~~~~~~~~~  163 (391)
                      ..+..||++
T Consensus       466 ~~~~~~~~~  474 (481)
T TIGR00879       466 VYFFLPETK  474 (481)
T ss_pred             HheecccCC
Confidence            776666644

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.47  E-value=2.4e-12  Score=117.97  Aligned_cols=147  Identities=12%  Similarity=0.032  Sum_probs=131.2

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHH
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G   83 (391)
                      ..|...+|+|.+++++|.+.+...++..+..+..+++.||+|+|+.+.++.+...+.....+  +++|.+.++..++++|
T Consensus       227 ~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~q~l~g  304 (382)
T TIGR00902       227 FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG--AIEAFPLIFLLQILHC  304 (382)
T ss_pred             HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH--hHhhHHHHHHHHHHHH
Confidence            34566678999999999999999999999999999999999999999999999999998884  4599999999999999


Q ss_pred             hhhhchhhhHHHHhhhhcCccchhhHHHHHH-hhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 016338           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICM-GGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST  154 (391)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  154 (391)
                      +..+...+....++.+. |+++|++..++++ ...++|..+++.++|.+.|++|+ ..|...+.++++..++
T Consensus       305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            99999999999999998 8899999999986 57889999999999999999996 6678878777765444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10504 putative transporter; Provisional

Probab=99.46  E-value=5.5e-12  Score=118.97  Aligned_cols=174  Identities=9%  Similarity=0.019  Sum_probs=134.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  279 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  279 (391)
                      +.+|...+..++.......+..+.|.+.++ +|.++.+.+...+...++..++.++.|+++||+|+|         ....
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r---------~~~~   79 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR---------NIFF   79 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH---------HHHH
Confidence            357777888888888888888999999987 899999999998888899999999999999999964         3344


Q ss_pred             HHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 016338          280 IGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  358 (391)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~  358 (391)
                      .+.....++.......++.+.....-.+.+...+...+.......|..| ++|+++.|..+...++|..++|.+.|.+.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~  159 (471)
T PRK10504         80 TAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE  159 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            4555555555554555555555555455445455555666677777767 789999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          359 WLGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       359 ~~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      +.| |++.|.+......+..+.....
T Consensus       160 ~~g-w~~~f~~~~~~~~l~~~~~~~~  184 (471)
T PRK10504        160 YAS-WHWIFLINIPVGIIGAIATLML  184 (471)
T ss_pred             hcc-HHHHHHHHHHHHHHHHHHHHHh
Confidence            887 8999988777666666555544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.46  E-value=1.6e-12  Score=123.00  Aligned_cols=160  Identities=17%  Similarity=0.104  Sum_probs=122.8

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccc-hH-HHHHHHHHH
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS-TA-SLLAVRAFF   82 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~-~~-~~~~~r~l~   82 (391)
                      .|.+.++.|.+..+.++......+...++.++.|+++||+|||+.+..+..+.+++.++.+....++ .+ ......++.
T Consensus       294 ~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~  373 (479)
T PRK10077        294 APEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFY  373 (479)
T ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            4777788898888788888888889999999999999999999999999999888877764332122 11 223334444


Q ss_pred             Hhhhhc-hhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHH------hhcCchhHHHHHHHHHHHHHHHH
Q 016338           83 GLAEGV-AMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML------STIGISGPFILFSSLGLLWLSTW  155 (391)
Q Consensus        83 G~g~~~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~------~~~gwr~~f~~~~~~~~~~~~~~  155 (391)
                      +.+.+. ..+....++.|.+|+++|++++++......+|..+++.+.+.+.      +..+|+..|++.+++.++..+..
T Consensus       374 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (479)
T PRK10077        374 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM  453 (479)
T ss_pred             HHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHH
Confidence            444443 23677899999999999999999999999999998876665443      57889999999888877777777


Q ss_pred             hhccccCCC
Q 016338          156 TSKVTNDPC  164 (391)
Q Consensus       156 ~~~~~~~~~  164 (391)
                      +.+.||+++
T Consensus       454 ~~~~~e~~~  462 (479)
T PRK10077        454 WKFVPETKG  462 (479)
T ss_pred             HhccccCCC
Confidence            666666543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.45  E-value=4.7e-12  Score=115.16  Aligned_cols=170  Identities=14%  Similarity=0.081  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhH
Q 016338          204 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  283 (391)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  283 (391)
                      .+....+............+|.|..+ .+.++.+.+.+.+...++..++.++.|+++||+|||         +.+..+..
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r---------~~~~~~~~   72 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK---------KVMIGADL   72 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh---------HHHHHHHH
Confidence            34566667777777778888888887 799999999999999999999999999999999964         34444444


Q ss_pred             hhHHHHHHhhcCC-----chhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhh
Q 016338          284 GPGVSLLCLNYAK-----SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV  357 (391)
Q Consensus       284 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~  357 (391)
                      +..+........+     +.+.......+.+...+...+....+..|..| ++|+++.|+.+....+|..++|.+.+.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        73 IRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4444333333222     55555555555555666667777888888877 79999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          358 QWLGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       358 ~~~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      +..| ++..+++.++..+++.+.....
T Consensus       153 ~~~g-~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       153 ATLG-IKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HHhh-HHHHHHHHHHHHHHHHHHHHhc
Confidence            9888 8888888777766665554444

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.44  E-value=6.4e-12  Score=115.50  Aligned_cols=158  Identities=12%  Similarity=0.045  Sum_probs=126.6

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHh
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~   84 (391)
                      +|.+.+|+|.|..+.|...+.+.++..++.+..|++.||+|||+.+..+..+..++..+.... .++....  .-++.|+
T Consensus       228 lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~--~~~l~g~  304 (393)
T PRK09705        228 LPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL-PLQLPVL--WAMVCGL  304 (393)
T ss_pred             HHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc-cchHHHH--HHHHHHH
Confidence            566667789999999999999999999999999999999999999998887777776654322 2332222  2346688


Q ss_pred             hhhchhhhHHHHhhhhcC-ccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC-chhHHHHHHHHHHHHHHHHhhccccC
Q 016338           85 AEGVAMPAMSTLTSRWFP-SHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTSKVTND  162 (391)
Q Consensus        85 g~~~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~  162 (391)
                      +.+...+.......|..+ +++|++..++.+....++..++|.+.+++.+..| |+..|.+.++..++..+......||+
T Consensus       305 g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        305 GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            888888877777777775 5789999999999999999999999999999876 88888888877777777667777776


Q ss_pred             CCC
Q 016338          163 PCN  165 (391)
Q Consensus       163 ~~~  165 (391)
                      +.+
T Consensus       385 ~~~  387 (393)
T PRK09705        385 FPQ  387 (393)
T ss_pred             ccc
Confidence            544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.43  E-value=1.1e-11  Score=113.63  Aligned_cols=171  Identities=8%  Similarity=-0.081  Sum_probs=136.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  279 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  279 (391)
                      +.++......+............+|.+.++ +|.|..+.++..+...++..+++++.|++.||+|+         |..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~---------r~~~~   72 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSL---------KHILL   72 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCcc---------HHHHH
Confidence            566777788888888888888888887766 89999999999999999999999999999999994         45566


Q ss_pred             HHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 016338          280 IGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  358 (391)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~  358 (391)
                      .+....++........++.+...+.-.+.+...+...+.......+..| ++|+++.+.......++..++|++.+.+.+
T Consensus        73 ~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091         73 FLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence            6777777777777777777776666555555444445555566777776 689999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHH
Q 016338          359 WLGSFQAFLTVTAGLYFVTTIFW  381 (391)
Q Consensus       359 ~~g~~~~~~~~~~~~~~~~~~~~  381 (391)
                      ..| ++..|.+.+...++..+..
T Consensus       153 ~~g-wr~~f~~~~~~~~~~~~~~  174 (382)
T PRK10091        153 EFS-WRYTFLLIAVFNIAVLASI  174 (382)
T ss_pred             hcc-HHHHHHHHHHHHHHHHHHH
Confidence            888 8999988887766655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.43  E-value=9.1e-12  Score=112.71  Aligned_cols=165  Identities=18%  Similarity=0.247  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhh
Q 016338          206 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP  285 (391)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  285 (391)
                      .+..++............|.++.+++|.|+.+.+++.+...++..++.++.|++.||+|+|         ..+..+.++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~l~~~~~~~   72 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR---------RVLIIGLLLF   72 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH---------HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe---------eeEeehhhhh
Confidence            3455666666777777888666666999999999999999999999999999999999954         4666666666


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchh
Q 016338          286 GVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQ  364 (391)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~  364 (391)
                      .++.......++.+......++.+...+...+....+..|..| |+|+++.+..+....+|..++|.+.+.+.+..| ++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~  151 (352)
T PF07690_consen   73 ALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WR  151 (352)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HC
T ss_pred             hhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cc
Confidence            6663333333555555555556666667777888888888888 699999999999999999999999999998887 88


Q ss_pred             HHHHHHHHHHHHHHHH
Q 016338          365 AFLTVTAGLYFVTTIF  380 (391)
Q Consensus       365 ~~~~~~~~~~~~~~~~  380 (391)
                      ..+++.++..++..++
T Consensus       152 ~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  152 WAFLISAILSLIAAIL  167 (352)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhh
Confidence            8999988888888775

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.43  E-value=6.9e-12  Score=115.07  Aligned_cols=168  Identities=15%  Similarity=0.096  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhh
Q 016338          206 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP  285 (391)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  285 (391)
                      ..................|.+.++ +|.|+.+.++..+...++..++.++.|++.||+|+|         ..+..+....
T Consensus        11 ~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r---------~~~~~~~~~~   80 (385)
T TIGR00710        11 GCLSILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR---------PVLLLGLFIF   80 (385)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh---------HHHHHHHHHH
Confidence            333344444555555666666555 899999999999999999999999999999999954         4455566666


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchh
Q 016338          286 GVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQ  364 (391)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~  364 (391)
                      .+........++.+...+..++.+...+...+....+..|..| ++|+++.+..+....++..++|.+.+.+.+..| ++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~  159 (385)
T TIGR00710        81 ALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WH  159 (385)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HH
Confidence            6666666666666665555555555555566667777888777 789999999999999999999999999999887 88


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 016338          365 AFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~  384 (391)
                      ..+.+.++..++..+.....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~  179 (385)
T TIGR00710       160 AIFAFLSLAGILLSALIFFI  179 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            88888777766666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.42  E-value=8.9e-11  Score=110.84  Aligned_cols=153  Identities=16%  Similarity=0.079  Sum_probs=120.2

Q ss_pred             hhHHHHhCCChhhHHHHHH-HHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhh-hhhc-cchHHHHHHHHHH
Q 016338            6 VPLAAKFGWSSSFLGIVQS-SFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP-WAAT-HSTASLLAVRAFF   82 (391)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-~a~~-~~~~~~~~~r~l~   82 (391)
                      |.+.+++|.|.++.++... ...++..++.++.|+++||+|+|+.+.++..+..+..+... .+.. ++.+.+...-+++
T Consensus       247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~  326 (491)
T PRK11010        247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFE  326 (491)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            4456779999999999984 66689999999999999999999988776665555443321 1222 4555555566666


Q ss_pred             HhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhc
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      .+..+...+...++..+..+++.+++..++.+...++|..+++.+.|.+.+..||+..|.+.++++++..+.....
T Consensus       327 ~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        327 NLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666677788889999999999999999999999999999999999999999999999888888766665554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.42  E-value=3e-11  Score=111.08  Aligned_cols=156  Identities=10%  Similarity=-0.006  Sum_probs=122.8

Q ss_pred             HHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc
Q 016338          215 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  294 (391)
Q Consensus       215 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (391)
                      ..+.....+|.+.++ +|.++++.+...+...++..+++++.|.+.||+||         |..+..+..+..+.......
T Consensus        35 ~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~gr---------r~~~~~~~~~~~~~~~~~~~  104 (394)
T PRK10213         35 VEFLPVSLLTPMAQD-LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDR---------RYVVILFAVLLTLSCLLVSF  104 (394)
T ss_pred             HHHHHHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc---------HHHHHHHHHHHHHHHHHHHH
Confidence            334444567776666 89999999999999999999999999999999995         45666666666766666666


Q ss_pred             CCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHH
Q 016338          295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGL  373 (391)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~  373 (391)
                      .++.+...+.-.+.+...+...+.......|..| ++|+++.+......+++..++|.+.+.+.+..| ++..|.+.+.+
T Consensus       105 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~l  183 (394)
T PRK10213        105 ANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WRNVFNAAAVM  183 (394)
T ss_pred             HChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHH
Confidence            6666666666555555555566677777778777 889999999999999999999999999999888 89998887766


Q ss_pred             HHHHHHHH
Q 016338          374 YFVTTIFW  381 (391)
Q Consensus       374 ~~~~~~~~  381 (391)
                      .++..+..
T Consensus       184 ~~~~~l~~  191 (394)
T PRK10213        184 GVLCIFWI  191 (394)
T ss_pred             HHHHHHHH
Confidence            66554443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.41  E-value=2e-11  Score=114.83  Aligned_cols=175  Identities=10%  Similarity=0.071  Sum_probs=133.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHH-HHhhccchhHHHHHHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDS-LIKAGYSLTLVRKIMQ  278 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~  278 (391)
                      |.++......+...+.+++...+++.|+++.+|++.+++......+.....+..+++|+++|| +||         |..+
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~---------r~~~   84 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGT---------KRTI   84 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccch---------HHHH
Confidence            456777778888889999999999999999999999999888888887888888899999999 895         4556


Q ss_pred             HHHhHhhHHHHHHhhcCCchhH-HHHHHHHHHHhhhhcccchhhhhhhccc-c--chhHHHHHHHHHHHHHHHHHHHHhh
Q 016338          279 SIGFIGPGVSLLCLNYAKSPAV-AAVLITIALSLSSFSQAGYLLNIQEIAP-D--CAGFLHGIANSAGTLAAIISTIGTG  354 (391)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~g~~~~~~~~g~~i~~~~~g  354 (391)
                      ..+.++..++.+......+... ......+.....+...+.......|.+| +  +|+++.++.....++|..++|.+.|
T Consensus        85 ~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g  164 (489)
T PRK10207         85 VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP  164 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            6667666666665555443222 2233333444455566677778888776 4  4577899999999999999999999


Q ss_pred             HhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          355 YFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       355 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      ++.++.| |++.|.+.++...++.+.+...
T Consensus       165 ~l~~~~g-w~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        165 VIADKFG-YSVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             HHHHhhC-hHHHHHHHHHHHHHHHHHHHHc
Confidence            9999998 8999988766665555554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.40  E-value=2.9e-11  Score=111.87  Aligned_cols=169  Identities=10%  Similarity=0.015  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHh
Q 016338          205 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG  284 (391)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  284 (391)
                      ..+.+.+.+.-........| .+++++|.+..+.++..+...++..+++++.|++.||+|+         |..+..+.++
T Consensus        13 ~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~---------r~~~~~~~~~   82 (412)
T TIGR02332        13 LFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGA---------RRWIAGIMVL   82 (412)
T ss_pred             HHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCh---------HHHHHHHHHH
Confidence            34444444444455555555 6666799999999999999999999999999999999995         4566677777


Q ss_pred             hHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhc-----
Q 016338          285 PGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ-----  358 (391)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-----  358 (391)
                      ..+........++.......-.+.+...+...+....+..|..| ++|+++.|+.+....+|..+++.+.+.+.+     
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            77777777666676665555445455555555666677788777 789999999999999999999999998874     


Q ss_pred             -cccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          359 -WLGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       359 -~~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                       ..| |+..|.+.++..++..++.++.
T Consensus       163 ~~~g-wr~~f~~~~~~~l~~~~~~~~~  188 (412)
T TIGR02332       163 ALKG-WQWLFLLEGFPSVILGVMTWFW  188 (412)
T ss_pred             Cccc-hhHHHHHHHHHHHHHHHHHhhc
Confidence             245 8999998777766555544443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03699 putative transporter; Provisional

Probab=99.40  E-value=4.4e-11  Score=110.07  Aligned_cols=173  Identities=12%  Similarity=0.033  Sum_probs=127.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 016338          201 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  280 (391)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  280 (391)
                      -++...+..++............|.+.++ +|.|+++.+...+...++..++.++.|++.||+|+|         ..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r---------~~~~~   77 (394)
T PRK03699          8 LTWISFLSYALTGALVIVTGMVMGPIAEY-FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK---------RQLIF   77 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------HHHHH
Confidence            34555566666666666677778887665 899999999999999999999999999999999954         45556


Q ss_pred             HhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 016338          281 GFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW  359 (391)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~  359 (391)
                      +.....+........++.+...+...+.+...+...+.......+..| ++|+.+.+..+....+++.++|.+.+.+.+.
T Consensus        78 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  157 (394)
T PRK03699         78 GFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR  157 (394)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            666666666666666666655555455555555555566666777777 7899999999888899999999999988754


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHH
Q 016338          360 LGSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       360 ~g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      ..+|+..|...++..++..++.+.
T Consensus       158 ~~gw~~~f~~~~~~~~~~~~~~~~  181 (394)
T PRK03699        158 SIEWYWVYACIGLVYVAIFILTLF  181 (394)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHh
Confidence            323899988877776665554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.38  E-value=2.2e-11  Score=115.33  Aligned_cols=171  Identities=10%  Similarity=0.045  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHh
Q 016338          203 WTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGF  282 (391)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  282 (391)
                      ..+.+..+.............|.+.++ +|.++.+.++..+...++..++.++.|++.||+|||         ..+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~   74 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR---------RLFLIST   74 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH---------HHHHHHH
Confidence            344555666666666677778877776 899999999999999999999999999999999954         5556667


Q ss_pred             HhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          283 IGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      ....++.......++.......-.+.+...+...+....+..|..| ++|+++.++.+....+|..++|.+.+.+.++.|
T Consensus        75 ~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  154 (485)
T TIGR00711        75 FAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH  154 (485)
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence            7777777777777777666666555555556666677777888776 899999999999999999999999999999888


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHh
Q 016338          362 SFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                       +++.|++.+...++..++....
T Consensus       155 -w~~~f~~~~~~~~~~~~~~~~~  176 (485)
T TIGR00711       155 -WRWIFLINVPIGIIVVVVAFFI  176 (485)
T ss_pred             -ceehhhhhhHHHHHHHHHHHHH
Confidence             8888888776666665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.38  E-value=4.9e-11  Score=105.93  Aligned_cols=176  Identities=16%  Similarity=0.026  Sum_probs=154.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  279 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  279 (391)
                      ...+.+.+..|.....++.....+|+..+| +|.|..++|.+.+.+..+..++.++...+.||+.         ||.++.
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~---------Rr~lLl   82 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGAPLLALLTGRLE---------RRRLLL   82 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---------hHHHHH
Confidence            356677888899999999999999999999 9999999999999999999999999999999999         556777


Q ss_pred             HHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 016338          280 IGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  358 (391)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~  358 (391)
                      ..+.+..++-++....++.....+.=.+.....+.+++.......+..| ++|+++.++......++..+|.+++.++-|
T Consensus        83 ~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~  162 (394)
T COG2814          83 GLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ  162 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            7788888888888888888888888777777777788888888777666 899999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          359 WLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       359 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      .+| |+..|+..+.+.+++.+..+..-+
T Consensus       163 ~~G-WR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         163 LFG-WRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             Hhh-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999 999999999998888877665444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.37  E-value=4.7e-11  Score=112.44  Aligned_cols=163  Identities=12%  Similarity=0.031  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHH
Q 016338          211 TNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLL  290 (391)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (391)
                      +.....+....+.|.+. +++|++..+.+...+...++..++.++.|+++||+|+|         ..+..+.+...+..+
T Consensus        47 ~~~~~~~~~~~~~~~l~-~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r---------~~~~~~~~~~~~~~~  116 (476)
T PLN00028         47 TCFVSTFAAAPLLPIIR-DNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR---------YGSAFLLMLTAPAVF  116 (476)
T ss_pred             HHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHHHHHHHHHHHHH
Confidence            33333344444555554 45899999999998888889999999999999999964         344456666666666


Q ss_pred             HhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhc----c-----c
Q 016338          291 CLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ----W-----L  360 (391)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~----~-----~  360 (391)
                      .....++.....+.-++.+...+... .......+..| ++|+++.|+.+...++|..+++.+.+.+.+    .     .
T Consensus       117 ~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~  195 (476)
T PLN00028        117 CMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT  195 (476)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence            66665665554443333322222222 23345667676 799999999998888888888777765532    1     3


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          361 GSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       361 g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      | |+..|.+.+++.++..+..+++.
T Consensus       196 g-Wr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        196 A-WRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHHc
Confidence            5 88999988887777666655544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.37  E-value=8.8e-12  Score=114.56  Aligned_cols=145  Identities=17%  Similarity=0.163  Sum_probs=115.8

Q ss_pred             hhhHH-HHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHH--hhhhhhhccchHHHHHHHHH
Q 016338            5 VVPLA-AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST--LLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         5 ~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~r~l   81 (391)
                      .|.+. +++|.++++.+...+...++..++.++.|+++||+|||+.+.....+..+..  ....+...++.+.+....++
T Consensus       242 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (394)
T TIGR00883       242 LPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLG  321 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            45544 6789999999999999999999999999999999999998776555444333  12211223567777788899


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHH-HhhhhhhHHHHhhHHHHHHhhcC-chhHHHHHHHHHH
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGIC-MGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGL  149 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~-~~~~~lg~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~  149 (391)
                      .|++.+...+...+++.|.+|+++|+++.++. +....+|..++|.+++.+.++.| |+..++......+
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       322 LALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            99998888899999999999999999999984 56667899999999999999988 8887777665443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11043 putative transporter; Provisional

Probab=99.37  E-value=5.5e-11  Score=109.78  Aligned_cols=172  Identities=10%  Similarity=0.087  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHH--HHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHh
Q 016338          205 VIIANITNNWGYFVLLSWMPIY--FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGF  282 (391)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  282 (391)
                      +....+.....+.....+.|.+  +++++|.++.+.+...+...++..++.++.|+++||+++|         ..+..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~   78 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK---------PVLLAGL   78 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc---------HHHHHHH
Confidence            3444444444555555566654  4556899999999999999999999999999999999964         3445555


Q ss_pred             HhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          283 IGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      ....+........++.+...+...+.+...+...+.......|..| ++++...+..+....++..++|.+.+.+.++.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g  158 (401)
T PRK11043         79 SLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG  158 (401)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5555555555555555554444333333323333344455666666 678888899988899999999999999999888


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          362 SFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                       ++..+.+.+...++..+.....++
T Consensus       159 -~~~~~~~~~~~~~~~~~~~~~~~~  182 (401)
T PRK11043        159 -WQAIFATLFAITLLLILPTLRLKP  182 (401)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHcCC
Confidence             888888887777776665554443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.37  E-value=6.3e-11  Score=109.05  Aligned_cols=168  Identities=11%  Similarity=0.006  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHh
Q 016338          205 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG  284 (391)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  284 (391)
                      .....+....+.......+|.+.++ +|.|+.+.+...+...++..++.++.|+++||+|||         ..+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r---------~~l~~~~~~   77 (392)
T PRK10473          8 SFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK---------PVAIPGAAL   77 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh---------HHHHHHHHH
Confidence            3444444555555666778877766 899999999999999999999999999999999954         455566666


Q ss_pred             hHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccch
Q 016338          285 PGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSF  363 (391)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~  363 (391)
                      ..+........++.+.......+.+...+...+.......|..| ++|+++.+..+....++..++|.+.+.+.+..| |
T Consensus        78 ~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~  156 (392)
T PRK10473         78 FIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-W  156 (392)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-h
Confidence            66666666665665554444344334444445556667777666 899999999999999999999999999888877 8


Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 016338          364 QAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~  383 (391)
                      +..+.+.+...++..+....
T Consensus       157 ~~~~~~~~~~~~i~~~~~~~  176 (392)
T PRK10473        157 QSLFYTMAAMGILVLLLSLF  176 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888877776666555433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.36  E-value=9.6e-11  Score=111.03  Aligned_cols=173  Identities=13%  Similarity=0.090  Sum_probs=132.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 016338          202 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  281 (391)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  281 (391)
                      ...+++..+....-......-.|.+.++ +|.+..+.++..+.+.++.....+..|+++||+||         |..+..+
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Gr---------k~~l~~~   77 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGF---------KRLLMLG   77 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------HHHHHHH
Confidence            3445566666666667777888888776 89999999999999999999999999999999994         4666677


Q ss_pred             hHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhh-hhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 016338          282 FIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNI-QEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW  359 (391)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~  359 (391)
                      .....++.......++.+...+.-.+.+...+...+...... .+..| ++|+++.|+......+|..++|.+.|.+.++
T Consensus        78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~  157 (495)
T PRK14995         78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH  157 (495)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            777777777777777777666654444444444444444444 44545 8999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          360 LGSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       360 ~g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      .| |++.|++...+.++..++.....
T Consensus       158 ~g-wr~~f~i~~~~~~~~~~l~~~~l  182 (495)
T PRK14995        158 FY-WGSVFLINVPIVLVVMGLTARYV  182 (495)
T ss_pred             CC-hHHHHHHHHHHHHHHHHHHHHhC
Confidence            88 99999888777776665554443

>TIGR00895 2A0115 benzoate transport

Probab=99.36  E-value=1.9e-11  Score=112.53  Aligned_cols=162  Identities=12%  Similarity=0.083  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHH
Q 016338          209 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS  288 (391)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (391)
                      .+.............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+++|         ..+..+..+..++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~~~   95 (398)
T TIGR00895        26 MLMDGYDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK---------RVLLWSILLFSVF   95 (398)
T ss_pred             HHHHHHHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH---------HHHHHHHHHHHHH
Confidence            333334444455566666555 899999999999999999999999999999999953         4555566666666


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHH
Q 016338          289 LLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFL  367 (391)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~  367 (391)
                      .......++.+...+...+.+...+...+....+..|..| ++|+++.++.+....+|..++|.+.+.+.+..| ++..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~  174 (398)
T TIGR00895        96 TLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLF  174 (398)
T ss_pred             HHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-ceeeh
Confidence            6666666666655555555555555666777788888877 789999999999999999999999999999888 77777


Q ss_pred             HHHHHHHHHHHHHH
Q 016338          368 TVTAGLYFVTTIFW  381 (391)
Q Consensus       368 ~~~~~~~~~~~~~~  381 (391)
                      .+.+....+..+..
T Consensus       175 ~~~~~~~~~~~~~~  188 (398)
T TIGR00895       175 YVGGIAPLLLLLLL  188 (398)
T ss_pred             hhhhhHHHHHHHHH
Confidence            77754444444433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.36  E-value=3.5e-11  Score=113.03  Aligned_cols=151  Identities=21%  Similarity=0.194  Sum_probs=134.5

Q ss_pred             chhhHH-HHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHH
Q 016338            4 AVVPLA-AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (391)
Q Consensus         4 ~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~   82 (391)
                      ++|.+. +++|.++...|++.+.+.+|..++++..+++.+|+++++.+..+.+..+++.+..  +++++.+...+.-++.
T Consensus       240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~l--al~~~~~~~~~~l~l~  317 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLL--ALSPSFWLALIALFLA  317 (524)
T ss_pred             hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHH--hcchHHHHHHHHHHHH
Confidence            466665 5689999999999999999999999999999999999999999999988888887  4459999999999999


Q ss_pred             HhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHh
Q 016338           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  156 (391)
                      |++........++.+.+..|++.|||.++++++....+..+|..+.|.+.+.+|.+..+.+.++..++..++..
T Consensus       318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888999999999999999999999999999999999999999999999999887776555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.35  E-value=6.3e-11  Score=107.48  Aligned_cols=163  Identities=9%  Similarity=-0.054  Sum_probs=111.4

Q ss_pred             HHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHh
Q 016338          213 NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  292 (391)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      ...+..+....|.+.+| +|.|+.+.+++.+...++..++++..|++.||+|||         .++..............
T Consensus         4 ~~~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr---------~~~~~~~~~~~~~~~~~   73 (368)
T TIGR00903         4 QAIWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR---------WFLFGSLATFAAAAGRL   73 (368)
T ss_pred             hHHHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch---------HHHHHHHHHHHHHHHHH
Confidence            34555666777777666 899999999999999999999999999999999954         23333333332322222


Q ss_pred             hcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHH
Q 016338          293 NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAG  372 (391)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~  372 (391)
                      ...++.......-++.+...+...+......+..++++|+++.++.+....+|..+++.+.+.+.++.| |+..|.+.++
T Consensus        74 ~~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~  152 (368)
T TIGR00903        74 LDPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAA  152 (368)
T ss_pred             HHhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHH
Confidence            222344444444333333333333333333333444899999999999999999999999999999888 9999988777


Q ss_pred             HHHHHHHHHHHhcc
Q 016338          373 LYFVTTIFWNLYST  386 (391)
Q Consensus       373 ~~~~~~~~~~~~~~  386 (391)
                      +.++..++.+...+
T Consensus       153 l~~~~~~~~~~~lp  166 (368)
T TIGR00903       153 VAAAGIILVLAALP  166 (368)
T ss_pred             HHHHHHHHHHHHcC
Confidence            76666555544433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.35  E-value=6.9e-11  Score=107.69  Aligned_cols=148  Identities=14%  Similarity=0.049  Sum_probs=112.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 016338          201 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  280 (391)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  280 (391)
                      .++...+..+..+........+.|.++++++|.|+.+.+++.+...++..++.++.|++.||+|+|         ..+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~   72 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR---------YTTTL   72 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch---------HHHHH
Confidence            566777788888888888889999878778999999999999999999999999999999999954         44556


Q ss_pred             HhHhhHHHHHHhhcCC-chhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 016338          281 GFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  358 (391)
Q Consensus       281 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~  358 (391)
                      +.+...+........+ +.+...+..++.+...+. ......+..+..| ++|+++.++.....++|..+++.+.+.+.+
T Consensus        73 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        73 SLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            6666666666666655 555544443333333333 3344556677666 899999999998888888888888777665

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.34  E-value=1.1e-10  Score=107.87  Aligned_cols=170  Identities=10%  Similarity=0.028  Sum_probs=127.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 016338          202 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  281 (391)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  281 (391)
                      +....+..+...+.........|.+.++ +|.|+.+.+++.+...++..++.++.|++.||+|||         ..+..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r---------~~~~~~   83 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFLVALVLAEVAGE-FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR---------LPMVTS   83 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHH
Confidence            4455566666666666677777766555 899999999999999999999999999999999954         455566


Q ss_pred             hHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccc
Q 016338          282 FIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  360 (391)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~  360 (391)
                      .+...+........++.+.......+.+...+...+....+..|..| ++|+++.++.+....+|..+++.+.+.+.+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891        84 IVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66666666666666666665555555555555556666777777766 89999999999999999999999999988765


Q ss_pred             c-chhHHHHHHHHHHHHHHHHH
Q 016338          361 G-SFQAFLTVTAGLYFVTTIFW  381 (391)
Q Consensus       361 g-~~~~~~~~~~~~~~~~~~~~  381 (391)
                      + +++..+.+.....++..+..
T Consensus       164 ~~~w~~~f~~~~~~~~~~~~~~  185 (405)
T TIGR00891       164 GDGWRALFFISILPIIFALWLR  185 (405)
T ss_pred             CccHHHHHHHHHHHHHHHHHHH
Confidence            4 37777777665555544433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.34  E-value=5.3e-11  Score=109.28  Aligned_cols=178  Identities=13%  Similarity=0.026  Sum_probs=119.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 016338          199 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  278 (391)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  278 (391)
                      +|.++...+.....+...+......+.+-++++|+|..+.+++.++..+...+.++..|++.||+|.|         ...
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R---------~v~  103 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR---------RWT  103 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHH
Confidence            35677777777777777777777777766656999999999999999999999999999999999965         344


Q ss_pred             HHHhHhhHHHHHHhhcC-----CchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHH
Q 016338          279 SIGFIGPGVSLLCLNYA-----KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIG  352 (391)
Q Consensus       279 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~  352 (391)
                      ..+.+...+..+.....     ++.....+.-.+.+.. +...+.....+++.+| ++||++.|+....+++|..+++.+
T Consensus       104 ~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l  182 (462)
T PRK15034        104 VFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV  182 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence            44555555555555432     4554444443333333 4455666677777777 789999999987777777766666


Q ss_pred             hhHhh-----ccccc------------hhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          353 TGYFV-----QWLGS------------FQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       353 ~g~l~-----~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      .+.+.     +..|.            ++....+.....++..+..++..+
T Consensus       183 ~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~  233 (462)
T PRK15034        183 APLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMN  233 (462)
T ss_pred             HHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            65433     22221            445555556655555555554433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.33  E-value=2.9e-11  Score=113.31  Aligned_cols=155  Identities=12%  Similarity=0.057  Sum_probs=108.1

Q ss_pred             chhhHHH-HhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhc--CchHHH-HHHHHHHHHHHhhhhhhhccchHHHHHHH
Q 016338            4 AVVPLAA-KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY--GGKKVL-AWGVALWSLSTLLTPWAATHSTASLLAVR   79 (391)
Q Consensus         4 ~~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~r   79 (391)
                      .+|.+.+ +.|.+..+.++....+.++..++.++.|+++||+  +||+.. .....+..++.+...+...++.+...+..
T Consensus       275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  354 (452)
T PRK11273        275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACM  354 (452)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence            3566544 5789999999999999999999999999999999  555432 22223333333322112223444445555


Q ss_pred             HHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHH-HhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhc
Q 016338           80 AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVV-GLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~-g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      ++.|.+..........+..|.+|+++||++.|+.+....+|..+ +|.+.+.+.++.||+..|.+.++..++.++....+
T Consensus       355 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        355 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            55555433333334456779999999999999999888888654 79999999999999999998888777655555443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.32  E-value=7.9e-11  Score=107.96  Aligned_cols=145  Identities=14%  Similarity=0.084  Sum_probs=122.5

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHh
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~   84 (391)
                      .|...+|.|.|+++.|.+.+...++..+..++.|++.||+|+|+.+..+....+++.++.++  .++.+.+++..++.|+
T Consensus       228 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~  305 (382)
T PRK11128        228 SAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS--TTALPWLIVIQILHCG  305 (382)
T ss_pred             HHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHH
Confidence            35555789999999999999999999999999999999999999999999988888777744  4889999999999999


Q ss_pred             hhhchhhhHHHHhhhhcCccchhhHHHHHH-hhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 016338           85 AEGVAMPAMSTLTSRWFPSHERASAIGICM-GGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLS  153 (391)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  153 (391)
                      +.+...+....++.+. +++++++..+..+ ...++|..+||.++|.+.|.+|+ ..++..+.+.++..+
T Consensus       306 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        306 TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            9998888889988886 5677788898886 55678889999999999999987 466666666655433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.32  E-value=3.5e-11  Score=110.62  Aligned_cols=159  Identities=15%  Similarity=0.082  Sum_probs=122.7

Q ss_pred             HHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc
Q 016338          215 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  294 (391)
Q Consensus       215 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (391)
                      ....+....|. +++++|.++.+.+++.+...++..++.++.|++.||+|||         ..+..+.....+.......
T Consensus         9 ~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r---------~~~~~~~~~~~~~~~~~~~   78 (399)
T TIGR00893         9 DRANLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGAR---------KTLAVFIVIWGVFTGLQAF   78 (399)
T ss_pred             HHHhhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcc---------eeeHHHHHHHHHHHHHHHH
Confidence            33444455555 5555899999999999999999999999999999999965         3444555555555555555


Q ss_pred             CCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHH
Q 016338          295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGL  373 (391)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~  373 (391)
                      .++.+...+..++.+...+...+....+..|..| ++|+++.++.+....+|..++|.+.+.+.+..+ ++..+...++.
T Consensus        79 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~  157 (399)
T TIGR00893        79 AGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVL  157 (399)
T ss_pred             HcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHH
Confidence            5666666666555555566667777888888877 899999999999999999999999999999888 88888888777


Q ss_pred             HHHHHHHHHHh
Q 016338          374 YFVTTIFWNLY  384 (391)
Q Consensus       374 ~~~~~~~~~~~  384 (391)
                      .++..+.....
T Consensus       158 ~~~~~~~~~~~  168 (399)
T TIGR00893       158 GIIWGVLWLKF  168 (399)
T ss_pred             HHHHHHHhhhe
Confidence            66666555443

>TIGR00897 2A0118 polyol permease family

Probab=99.32  E-value=2.2e-10  Score=105.76  Aligned_cols=162  Identities=12%  Similarity=0.040  Sum_probs=111.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 016338          199 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  278 (391)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  278 (391)
                      .|.+....+..++..........+.|.++++ +|.++.+.+...+...++..++.++.|++.||+|+|         +.+
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k---------~~l   81 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPL---------KTM   81 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcH---------HHH
Confidence            4566667777777777777777889999876 899999999999999999999999999999999964         444


Q ss_pred             HHHhHhhHHHHHHh---hcC-CchhHHHHHHHHHHHhhhhcccchhhhhhhc-cccchhHHHHHHHHHHHHHH-HHHHHH
Q 016338          279 SIGFIGPGVSLLCL---NYA-KSPAVAAVLITIALSLSSFSQAGYLLNIQEI-APDCAGFLHGIANSAGTLAA-IISTIG  352 (391)
Q Consensus       279 ~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~-~i~~~~  352 (391)
                      ..+.....++....   ... ++.+.......+.+...+...+.......+. ++|+|++++|+.+...++|. .++|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~  161 (402)
T TIGR00897        82 MIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY  161 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44554444443322   222 2333333333332222233333344444454 55899999999999999986 589999


Q ss_pred             hhHhhccccchhHHHHHHH
Q 016338          353 TGYFVQWLGSFQAFLTVTA  371 (391)
Q Consensus       353 ~g~l~~~~g~~~~~~~~~~  371 (391)
                      .+.+.+..| +...++...
T Consensus       162 ~~~l~~~~g-~~~~~~~~~  179 (402)
T TIGR00897       162 SSYAIPAFG-EMNTLWSAL  179 (402)
T ss_pred             HHhcccccc-hHHHHHHHH
Confidence            999988877 444444333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09952 shikimate transporter; Provisional

Probab=99.31  E-value=1.4e-10  Score=108.18  Aligned_cols=153  Identities=12%  Similarity=0.041  Sum_probs=113.4

Q ss_pred             HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhh-c-cchHHHHHHHHHHHhh
Q 016338            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA-T-HSTASLLAVRAFFGLA   85 (391)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~-~-~~~~~~~~~r~l~G~g   85 (391)
                      +.+++|.+.++...+.........++.+..|+++||+|||+.+..+.++..++........ . ++.+.+++..++.+++
T Consensus       277 ~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  356 (438)
T PRK09952        277 STQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIA  356 (438)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            4567888887766666667777788899999999999999998888776555443331111 1 3344445566777888


Q ss_pred             hhchhhhHHHHhhhhcCccchhhHHHHHHhh-hhhhHHHHhhHHHHHHhhc--CchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGG-FHLGNVVGLLLTPIMLSTI--GISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~-~~lg~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .+...+...+++.|.+|.|.|+.+.++.... ..+|..++|.+.+++.+..  +|+..+...++..++..+..+. .+|
T Consensus       357 ~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~  434 (438)
T PRK09952        357 HDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL-MKD  434 (438)
T ss_pred             HHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-ccc
Confidence            8887888899999999999999888885544 4589999999999998744  4888888877777766555543 344

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.31  E-value=7.5e-11  Score=107.93  Aligned_cols=157  Identities=12%  Similarity=0.108  Sum_probs=121.6

Q ss_pred             HHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcC
Q 016338          216 YFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA  295 (391)
Q Consensus       216 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (391)
                      ........|.+.++ +|.|+.+.+...+...++..++.++.|++.||+|||         ..+..+.....+........
T Consensus         7 ~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~i~~~~~~~~   76 (377)
T PRK11102          7 IDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK---------PVILGGTLVFALAAVACALA   76 (377)
T ss_pred             HHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh---------HHHHHHHHHHHHHHHHHHHH
Confidence            34455677778777 899999999999999999999999999999999954         45556666666666666666


Q ss_pred             CchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHH
Q 016338          296 KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLY  374 (391)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~  374 (391)
                      ++.+.......+.+...+...+.......|..| ++|+++.++.+....+|..++|.+.+.+.+..| ++..+.+.+...
T Consensus        77 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  155 (377)
T PRK11102         77 QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAA  155 (377)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHH
Confidence            666555555555455555555666677777777 789999999999999999999999999999887 888888877777


Q ss_pred             HHHHHHHHH
Q 016338          375 FVTTIFWNL  383 (391)
Q Consensus       375 ~~~~~~~~~  383 (391)
                      ++..+....
T Consensus       156 ~~~~~~~~~  164 (377)
T PRK11102        156 ILAAALVFF  164 (377)
T ss_pred             HHHHHHHHH
Confidence            666555443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.30  E-value=4e-08  Score=90.56  Aligned_cols=254  Identities=9%  Similarity=-0.031  Sum_probs=158.0

Q ss_pred             hhHHHHhCC-----ChhhHHHHHHHHHHHHHHH-HHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccc--------
Q 016338            6 VPLAAKFGW-----SSSFLGIVQSSFLWGYIFS-SVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS--------   71 (391)
Q Consensus         6 ~~i~~~~~~-----s~~~~g~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~--------   71 (391)
                      -++++.+..     +.+.+.++-+...+...+. .++.+++++|++|++.+-+....+.....+.++..-++        
T Consensus        27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~  106 (472)
T TIGR00769        27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTA  106 (472)
T ss_pred             HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcH
Confidence            345566555     3367899999888877766 89999999999999999888777777776665442111        


Q ss_pred             ---------------------hHHHHHHHHHHHhhhhchhh-hHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHH
Q 016338           72 ---------------------TASLLAVRAFFGLAEGVAMP-AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTP  129 (391)
Q Consensus        72 ---------------------~~~~~~~r~l~G~g~~~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~  129 (391)
                                           .|...+.-+...+-...... .-....+|.++.+|-.|..++...+.++|..+++.+..
T Consensus       107 ~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~  186 (472)
T TIGR00769       107 LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIK  186 (472)
T ss_pred             HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 23333444455555444444 66788999999999999999999999999999999988


Q ss_pred             HHHhh--------cCch----hHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhh
Q 016338          130 IMLST--------IGIS----GPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLL  197 (391)
Q Consensus       130 ~l~~~--------~gwr----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (391)
                      ++.+.        ..|.    ..+.+.++...+.....+ .+.+...+++...+.+    +++++++.+.....+.+.++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~----~~~~k~k~k~~~~es~k~i~  261 (472)
T TIGR00769       187 YFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYW-WVNRNVLTDPRSYNPA----LKEKKVKPKMSTMESLKFLV  261 (472)
T ss_pred             HHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccCCccccchh----hccccCCCCCCHHHHHHHHH
Confidence            87631        1242    233333333333333333 3322221111111111    01111111222345677889


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcch----hhHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 016338          198 SKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ----AAWFSAVPWGTMAVSGYMAGKASDSLIK  265 (391)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~dr~~~  265 (391)
                      |+|..+.+++...++......+..-.-...++.+- |+++    .|.+....++...+.+++.+++.+|+|-
T Consensus       262 ~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw  332 (472)
T TIGR00769       262 SSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGW  332 (472)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            99988888888888777777766555555555442 3322    2333444455555666677889999884

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.30  E-value=1.6e-10  Score=106.80  Aligned_cols=158  Identities=14%  Similarity=0.013  Sum_probs=114.6

Q ss_pred             HHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc
Q 016338          215 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  294 (391)
Q Consensus       215 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (391)
                      ....+...+|.+.++ +|.|+.+.+...+...++..++.++.|.++||+|||         ..+..+.....+.......
T Consensus        28 ~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r---------~~l~~~~~~~~~~~~~~~~   97 (406)
T PRK15402         28 ANDMIQPGMLAVVED-FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRR---------PVMLAGVAFFILTCLAILL   97 (406)
T ss_pred             hhhhHhcchHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHHHHHHHHHHHHHHHHH
Confidence            344444556655555 899999999999999999999999999999999964         3445555555655555555


Q ss_pred             CCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHH
Q 016338          295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGL  373 (391)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~  373 (391)
                      .++.+.......+.+...+...+.......|..| ++|.+..++......++..++|.+.+.+.++.| ++..+++.+++
T Consensus        98 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-w~~~~~~~~~~  176 (406)
T PRK15402         98 AQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-WRGMFVLFAAL  176 (406)
T ss_pred             HccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHH
Confidence            5555554444444333334444555666677666 788888999888888999999999999998877 88888888877


Q ss_pred             HHHHHHHHHH
Q 016338          374 YFVTTIFWNL  383 (391)
Q Consensus       374 ~~~~~~~~~~  383 (391)
                      .+++.+....
T Consensus       177 ~~~~~~~~~~  186 (406)
T PRK15402        177 AALSFFGLWR  186 (406)
T ss_pred             HHHHHHHHHH
Confidence            7776665443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.30  E-value=9.3e-11  Score=109.49  Aligned_cols=174  Identities=14%  Similarity=0.085  Sum_probs=114.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 016338          199 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  278 (391)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  278 (391)
                      ++.++...+.....+.....+....| ++++ .|.|+.+.++..+...++..++.++.|++.||+++|         ..+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~---------~~~   94 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPR---------VFL   94 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCc---------eeh
Confidence            34444444544444444444455555 5556 599999999999999999999999999999999965         333


Q ss_pred             HHHhHhhHHHHHHhhcC----CchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHh
Q 016338          279 SIGFIGPGVSLLCLNYA----KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT  353 (391)
Q Consensus       279 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~  353 (391)
                      ..+.+..++........    ++.........+.+...+...+.......|..| ++|++++|+.+....+++.++|.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~  174 (438)
T TIGR00712        95 PAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV  174 (438)
T ss_pred             HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence            44544555544443332    222222333333333344444445555666665 8999999999999999999999888


Q ss_pred             hHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 016338          354 GYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       354 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      +...+...+|+..|++.++..++..+..+.
T Consensus       175 ~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~  204 (438)
T TIGR00712       175 LLGMAWFNDWHAALYFPAICAIIVALFAFA  204 (438)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            876554333899998888777665544443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.30  E-value=1.2e-10  Score=107.05  Aligned_cols=171  Identities=13%  Similarity=0.041  Sum_probs=122.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 016338          199 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  278 (391)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  278 (391)
                      +|+++.+.+..++..+.........+...++ ++.++.+.++..+...+...+..++.|++.||++||         .++
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr---------~vl   71 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKG---------RVM   71 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCc---------hhh
Confidence            4677778888888777666666666666555 788888999999999999999999999999999965         344


Q ss_pred             HHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhh
Q 016338          279 SIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV  357 (391)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~  357 (391)
                      ..+..+..+..+......+.   ...-++.+...+...|...++..|..| |+|+++.|+.+.....+..+||.++|.+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         72 FIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444433332222222   222334455556677888888888877 89999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          358 QWLGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       358 ~~~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      +..  +...+.+.+...+++.+.....
T Consensus       149 ~~~--~~~~~~i~~~~~~~~~~~~~~l  173 (393)
T PRK11195        149 DPH--AEAALAVCALIYLLAALFNLFI  173 (393)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence            863  5666666555555554444433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.30  E-value=2.1e-10  Score=105.71  Aligned_cols=166  Identities=12%  Similarity=0.011  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHh
Q 016338          205 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG  284 (391)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  284 (391)
                      ......+............|.+.++ +|.|+.+.+...+...++..++.++.|+++||+|||         ..+..+...
T Consensus        13 ~~~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr---------~~~~~~~~~   82 (394)
T PRK11652         13 LVLLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR---------PVILVGMSI   82 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh---------HHHHHHHHH
Confidence            3333334444444444556666655 899999999999999999999999999999999964         444455555


Q ss_pred             hHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccch
Q 016338          285 PGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSF  363 (391)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~  363 (391)
                      ..+........++.+.......+.+...+...+.......|..+ ++++.+.+..+....++..++|.+.+.+.+..| +
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~  161 (394)
T PRK11652         83 FILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-W  161 (394)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-h
Confidence            56555555555555555444444333333334444555666666 788999999999999999999999999998887 8


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 016338          364 QAFLTVTAGLYFVTTIFW  381 (391)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~  381 (391)
                      +..+.+.++..++..+..
T Consensus       162 ~~~f~~~~~~~~~~~~~~  179 (394)
T PRK11652        162 RACYLFLLLLGAGVTFSM  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888776665544433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.30  E-value=1.3e-10  Score=107.00  Aligned_cols=173  Identities=13%  Similarity=0.062  Sum_probs=117.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 016338          199 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  278 (391)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  278 (391)
                      ||.+|......++.+.....+..++|.|+++++|.++.+.+...+...+...+++++.|+++||+|||       +... 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr-------~~~~-   72 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLK-------KHLL-   72 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-------HHHH-
Confidence            57899999999999999999999999999998999999999999999999999999999999999975       2222 


Q ss_pred             HHHhHhhHHHH---HHhhcCCc----hhH-HHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 016338          279 SIGFIGPGVSL---LCLNYAKS----PAV-AAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIIST  350 (391)
Q Consensus       279 ~~~~~~~~~~~---~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~  350 (391)
                       .+.....+..   ......+.    ... ..+..++.....+...+....+..+.. ++++...|......++|..++|
T Consensus        73 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~  150 (396)
T TIGR00882        73 -WIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS-RNSNFEYGKARMFGCVGWALCA  150 (396)
T ss_pred             -HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh-hhcccccchhhhhcccHHHHHH
Confidence             2222221111   11111111    111 111112222222333333444444432 3345577888888899999999


Q ss_pred             HHhhHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 016338          351 IGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       351 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      .+.|.+.+. + ++..|+..+.+.++..++.+.
T Consensus       151 ~~~g~l~~~-~-~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       151 SIAGILFSI-D-PQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             HHHhhhhcc-C-chHHHHHHHHHHHHHHHHHHH
Confidence            999988765 5 888888887777766655544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.29  E-value=2.5e-10  Score=103.12  Aligned_cols=181  Identities=10%  Similarity=0.072  Sum_probs=145.7

Q ss_pred             HHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 016338          194 RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLV  273 (391)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~  273 (391)
                      .+++.++....+.+......++.....+++=-++++ .+-.+..-|........+-++.-+..+++.+|+|         
T Consensus       365 ~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiG---------  434 (618)
T KOG3762|consen  365 GKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIG---------  434 (618)
T ss_pred             HHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhc---------
Confidence            356778887777777777777777777888778888 5666666666666666677778888999999999         


Q ss_pred             HHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHH-HHHHHHHHH
Q 016338          274 RKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAG-TLAAIISTI  351 (391)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~-~~g~~i~~~  351 (391)
                      +..++..++.+...-++.+...+++|..+..-++-+...+..+....++++...| +.+.++.++..... .+|-.+|++
T Consensus       435 Hv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl  514 (618)
T KOG3762|consen  435 HVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL  514 (618)
T ss_pred             ccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhh
Confidence            5567778888888888888899999999888888888888888889999998777 89999999988775 579999999


Q ss_pred             HhhHhhccccchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          352 GTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       352 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      ++|.+.+.+| -...|..+++.+++..+......
T Consensus       515 IGG~~v~~fg-~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  515 IGGFVVERFG-ARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             hhhhhheeeh-hHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999998 77778887777777766655443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=6.3e-09  Score=94.61  Aligned_cols=314  Identities=14%  Similarity=0.035  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHHHHhhhhcC
Q 016338           23 QSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFP  102 (391)
Q Consensus        23 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~  102 (391)
                      .++-.....++.++.+.+.|+.|+|+.++++...+..-.+..  . -+|-+.+++...+.|+|.+..+...-.++.|..+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf--l-~~N~y~~yfssallG~Gaallw~GqG~ylt~~st  132 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF--L-FPNSYYLYFSSALLGFGAALLWTGQGGYLTSNST  132 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH--H-hcchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence            667777788999999999999999999999999988877765  2 2778889999999999999999999999999999


Q ss_pred             ccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh--------cCch-h----------HHHHHHHHHHHHHHHH--hhcccc
Q 016338          103 SHERASAIGICMGGFHLGNVVGLLLTPIMLST--------IGIS-G----------PFILFSSLGLLWLSTW--TSKVTN  161 (391)
Q Consensus       103 ~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~--------~gwr-~----------~f~~~~~~~~~~~~~~--~~~~~~  161 (391)
                      +|++.+..++.......+.++|..+...+..+        .+-+ .          ...+.+++..+..+..  ....|.
T Consensus       133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~  212 (461)
T KOG3098|consen  133 RETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPS  212 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCc
Confidence            99999999999999999999887655433211        0111 0          1111111111111111  111111


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCC--Cc-chh
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNV--NL-KQA  238 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~-~~~  238 (391)
                      +.... +.++.+          +...+..+...+++++|+...+....+..+..........|..+.-....  +. ...
T Consensus       213 ~~~~~-~~~~~~----------~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~  281 (461)
T KOG3098|consen  213 KDVVN-CKSSSE----------TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLI  281 (461)
T ss_pred             cchhh-hhhhcc----------ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHH
Confidence            11100 000000          00011112334566777777766666665555555556666655443222  22 223


Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcC-C-----------------chhH
Q 016338          239 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-K-----------------SPAV  300 (391)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~  300 (391)
                      +......+.+...+....+.+.+|.++.+      ++..+.++..+......+.... +                 +...
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg------~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~  355 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFG------RKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYL  355 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcc------cCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhH
Confidence            44445556677777777788888876654      4455555555544444333211 0                 1223


Q ss_pred             HHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHh
Q 016338          301 AAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYF  356 (391)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l  356 (391)
                      ..+...+.+..-.+.....+....+..|++|..+.++...-..++..++-...+..
T Consensus       356 ~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  356 ALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            44445555555667777788888888899999999888888888777766655543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.27  E-value=1.6e-09  Score=91.18  Aligned_cols=159  Identities=21%  Similarity=0.172  Sum_probs=122.4

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhc-----cchHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT-----HSTASLL   76 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~-----~~~~~~~   76 (391)
                      +.--|++++++|.|.+|...+.+...+|..+ .++.|.+.||+|+|.++.+|.+...+|..+...+..     .++|.+.
T Consensus        22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~  100 (250)
T PF06813_consen   22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC  100 (250)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence            3446889999999999999999999999887 588999999999999999999999999988755532     4678888


Q ss_pred             HHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHh
Q 016338           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  156 (391)
                      +..++.|.+.+.....+...-.+.|| ++||.+.|+.-...+++..+-..+...+.+. +-..-+...+....+..+...
T Consensus       101 ~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~~~v~l~~~  178 (250)
T PF06813_consen  101 LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLPAVVCLVAM  178 (250)
T ss_pred             HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHh
Confidence            88888888877776776676778897 6899999999999999988887777666554 222333444444444444444


Q ss_pred             hccccCC
Q 016338          157 SKVTNDP  163 (391)
Q Consensus       157 ~~~~~~~  163 (391)
                      .+.++.|
T Consensus       179 ~~vr~~~  185 (250)
T PF06813_consen  179 FFVRPVP  185 (250)
T ss_pred             hheeccC
Confidence            4444444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.27  E-value=2.4e-10  Score=105.12  Aligned_cols=150  Identities=19%  Similarity=0.183  Sum_probs=116.1

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHH-HHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhh-h---hccchHHHHHHH
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLW-GYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-A---ATHSTASLLAVR   79 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-a---~~~~~~~~~~~r   79 (391)
                      .+...+|.|.|++++|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .   ..++........
T Consensus       231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (390)
T TIGR02718       231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS  310 (390)
T ss_pred             hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence            455667789999999999988764 66677899999999999999998877665333332211 1   013344445556


Q ss_pred             HHHHhhhhchhhhHHHHhhhhcCc-cchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 016338           80 AFFGLAEGVAMPAMSTLTSRWFPS-HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST  154 (391)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~-~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  154 (391)
                      .+.+++.+...+...+...+..++ |++++.++..+...++|..++|.++|.+.+..|++..|...+++.++..+.
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            666777777778888888787766 789999999999999999999999999999999999999888777665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.27  E-value=4.4e-10  Score=104.00  Aligned_cols=155  Identities=13%  Similarity=0.062  Sum_probs=115.4

Q ss_pred             HHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCc
Q 016338          218 VLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS  297 (391)
Q Consensus       218 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (391)
                      ....-+|... +++|.+..+.+...+.+.++..+++++.|.++||+|||         ..+..+..+..++.......++
T Consensus        34 ~~~p~l~~i~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr---------~~l~~~~~~~~~~~~~~~~a~~  103 (413)
T PRK15403         34 LIQPGIINVV-RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR---------PVLITGALIFTLACAATLFTTS  103 (413)
T ss_pred             hhccCHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch---------HHHHHHHHHHHHHHHHHHHcCC
Confidence            3334444443 44899999999999999999999999999999999954         4555666666666666666666


Q ss_pred             hhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHH
Q 016338          298 PAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFV  376 (391)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~  376 (391)
                      .+...+.-++.+...+...+.......|..| ++++++.++.+....++..++|.+.+.+.++.| |+..|++.++..++
T Consensus       104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~i  182 (413)
T PRK15403        104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAIIAVMGLI  182 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence            6555554333333333334445566777777 788999999999999999999999999988877 99999988887777


Q ss_pred             HHHHHHH
Q 016338          377 TTIFWNL  383 (391)
Q Consensus       377 ~~~~~~~  383 (391)
                      +.+..+.
T Consensus       183 ~~~~~~~  189 (413)
T PRK15403        183 AFVGLLL  189 (413)
T ss_pred             HHHHHHH
Confidence            7665443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.26  E-value=1.9e-10  Score=107.29  Aligned_cols=134  Identities=19%  Similarity=0.178  Sum_probs=99.5

Q ss_pred             hhhHHH-HhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHh-hhhh-hhccchHHHHHHHHH
Q 016338            5 VVPLAA-KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTL-LTPW-AATHSTASLLAVRAF   81 (391)
Q Consensus         5 ~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~~~~-a~~~~~~~~~~~r~l   81 (391)
                      .|.+.+ ++|.+..+.++....+.++..++.++.|+++||+|||+.+..+..+..+... ...+ ...++.........+
T Consensus       261 ~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (434)
T PRK15075        261 TPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELW  340 (434)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            566544 4799999999999999999999999999999999999988876554433221 1111 112444445555666


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhh-hhhHHHHhhHHHHHHhhcCch
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGF-HLGNVVGLLLTPIMLSTIGIS  138 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~-~lg~~~g~~~~~~l~~~~gwr  138 (391)
                      .|++.+...+....++.|.+|+++|+.+.++..... .++..++|.+.+.+.++.|++
T Consensus       341 ~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        341 LSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            677777766777788999999999999999865444 445778999999999988864

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.26  E-value=2.9e-10  Score=105.91  Aligned_cols=162  Identities=12%  Similarity=0.049  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 016338          202 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  281 (391)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  281 (391)
                      +....+..+.............|.+ ++++|.|+.+.++..+...++..++.++.|++.||+|+         |..+..+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~---------r~~l~~~   89 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLI-KADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGR---------KPLMMWS   89 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------hHHHHHH
Confidence            3444455555555555555555554 45589999999999999999999999999999999995         4556667


Q ss_pred             hHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccc
Q 016338          282 FIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  360 (391)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~  360 (391)
                      .....++.......++.+...+.-.+.+...+...+....+..|..| ++|+++.++......+|..+++.+.+.+.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~  169 (426)
T PRK12307         90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY  169 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC
Confidence            77777766666666666665555555444445556666677777777 78999999999999999999999999998888


Q ss_pred             cchhHHHHHHHHHH
Q 016338          361 GSFQAFLTVTAGLY  374 (391)
Q Consensus       361 g~~~~~~~~~~~~~  374 (391)
                      | ++..+.+.....
T Consensus       170 ~-w~~~f~i~~~~~  182 (426)
T PRK12307        170 G-WRAAFFVGLLPV  182 (426)
T ss_pred             C-HHHHHHHHHHHH
Confidence            7 888887754443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.26  E-value=3e-10  Score=105.69  Aligned_cols=152  Identities=21%  Similarity=0.216  Sum_probs=129.9

Q ss_pred             hHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCch--HHHHHHHHHHHHHHhhhhh--h----hccchHHHHHH
Q 016338            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGK--KVLAWGVALWSLSTLLTPW--A----ATHSTASLLAV   78 (391)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--a----~~~~~~~~~~~   78 (391)
                      .-.+++|+|.++...+.-+..+...++++.+|++.||+|.|  +++..++..+.+..+..-+  .    -.++-+.+.+.
T Consensus       307 ~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~  386 (477)
T PF11700_consen  307 YATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVL  386 (477)
T ss_pred             HHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHH
Confidence            34568999999999999999999999999999999999999  8888888777554444322  0    03677889999


Q ss_pred             HHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC-chhHHHHHHHHHHHHHHHHhh
Q 016338           79 RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        79 r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~  157 (391)
                      -++.|+..|..++.+.++.+|..|+++.+..+|++....-....+||.+.+.+.+..| -|..+....++.++..++..+
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999886 888888877777776666544


Q ss_pred             c
Q 016338          158 K  158 (391)
Q Consensus       158 ~  158 (391)
                      .
T Consensus       467 v  467 (477)
T PF11700_consen  467 V  467 (477)
T ss_pred             c
Confidence            3

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.26  E-value=5e-11  Score=108.94  Aligned_cols=165  Identities=11%  Similarity=0.027  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHH
Q 016338          209 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS  288 (391)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (391)
                      ++..+.....+....|.+ ++++|.|..+.+++.+...++..++.++.|+++||+|+|         ..+..+..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~~~~~~~   73 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYL-VEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR---------VFLPIGLILCAIV   73 (379)
T ss_pred             hhHHHHhHHhhhhhhHHH-HHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCe---------ehhHHHHHHHHHH
Confidence            344555556666667754 455899999999999999999999999999999999954         4555666666666


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHH-HhhHhhccccchhHH
Q 016338          289 LLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTI-GTGYFVQWLGSFQAF  366 (391)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~-~~g~l~~~~g~~~~~  366 (391)
                      .++....++.+...+...+.+...+...+....+..|..| ++|+++.++.+....+|..++|. +.+.+.+..+ ++..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~  152 (379)
T TIGR00881        74 NLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWV  152 (379)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhH
Confidence            6666666666666666555555566667777888888777 78999999999999999999994 6666666666 8888


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 016338          367 LTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~  384 (391)
                      +.+.+.+.++..+..+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~  170 (379)
T TIGR00881       153 FIVPGIIAIIVSLICFLL  170 (379)
T ss_pred             HHHHHHHHHHHHHHHhee
Confidence            887776666655544443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.22  E-value=2.9e-08  Score=95.70  Aligned_cols=155  Identities=19%  Similarity=0.259  Sum_probs=126.5

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhc-CchHHHHHHHHHHHHHHhhhhhhhccc------hHHHH
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWAATHS------TASLL   76 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~a~~~~------~~~~~   76 (391)
                      +...+.+.+|.+.++...+...+....-+...++|.++|++ ||++.+.++.++..+|..+.++...++      ....+
T Consensus        10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l   89 (654)
T TIGR00926        10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL   89 (654)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence            44556778999999999999999998999999999999975 999999999999999998875431111      23356


Q ss_pred             HHHHHHHhhhhchhhhHHHHhhhhcCcc---chhhHHHHHHhhhhhhHHHHhhHHHHHHhhc-------CchhHHHHHHH
Q 016338           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSH---ERASAIGICMGGFHLGNVVGLLLTPIMLSTI-------GISGPFILFSS  146 (391)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~---~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~-------gwr~~f~~~~~  146 (391)
                      ++-.+..+|.|..-|...+...|.++++   +|...+.++..+.++|..+++.+.+++.+..       +|...|.+.++
T Consensus        90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i  169 (654)
T TIGR00926        90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAI  169 (654)
T ss_pred             HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHH
Confidence            7778888999999999999999999754   3778899999999999999999999887543       69999999888


Q ss_pred             HHHHHHHHHhhc
Q 016338          147 LGLLWLSTWTSK  158 (391)
Q Consensus       147 ~~~~~~~~~~~~  158 (391)
                      ..++..+.....
T Consensus       170 ~m~ia~lvf~~g  181 (654)
T TIGR00926       170 LMILALIVFMAG  181 (654)
T ss_pred             HHHHHHHHHHHh
Confidence            888766655443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.21  E-value=3e-10  Score=107.99  Aligned_cols=159  Identities=16%  Similarity=0.090  Sum_probs=107.4

Q ss_pred             hhhHHHHhCCChhhHHH------------HHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhcc--
Q 016338            5 VVPLAAKFGWSSSFLGI------------VQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH--   70 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~--   70 (391)
                      .|.+.++.|.+..+.+.            ......++..++.+..++++||+|||+.+.++..+.+++..+.++...+  
T Consensus       311 ~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~  390 (502)
T TIGR00887       311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS  390 (502)
T ss_pred             cHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            56777778876543211            2334445666788899999999999999988888777776665433211  


Q ss_pred             chHHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh----------cCchhH
Q 016338           71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST----------IGISGP  140 (391)
Q Consensus        71 ~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~----------~gwr~~  140 (391)
                      +...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.+++|.+.+.+.+.          .++...
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  470 (502)
T TIGR00887       391 THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHV  470 (502)
T ss_pred             hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHH
Confidence            1111111111122222223456677789999999999999999999999999999999988773          345667


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCC
Q 016338          141 FILFSSLGLLWLSTWTSKVTNDPC  164 (391)
Q Consensus       141 f~~~~~~~~~~~~~~~~~~~~~~~  164 (391)
                      |.+.++..++..+.. ++.||++.
T Consensus       471 ~~i~~~~~~~~~i~~-~~lpEt~~  493 (502)
T TIGR00887       471 LEIFALFMFLGILFT-LLIPETKG  493 (502)
T ss_pred             HHHHHHHHHHHHHHh-eEeccCCC
Confidence            888887777665544 56677544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.20  E-value=1.3e-09  Score=98.71  Aligned_cols=160  Identities=14%  Similarity=0.013  Sum_probs=122.1

Q ss_pred             HHHhhHHHHHhhhCCCcch-hhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCc
Q 016338          219 LLSWMPIYFNTVFNVNLKQ-AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS  297 (391)
Q Consensus       219 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (391)
                      ...+...++.+++|+++++ .|.+.+.+..+..+..++.|+++||+|.|         .++..+.+.-.+...+....++
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K---------~vL~l~~l~Wsl~t~L~~fa~S  114 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK---------PVLVLQALSFVCVWLLLLLGTS  114 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556777779999999 99999999999999999999999999954         5666677777777777766666


Q ss_pred             hhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc--chhHHHHHHHHHH
Q 016338          298 PAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG--SFQAFLTVTAGLY  374 (391)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g--~~~~~~~~~~~~~  374 (391)
                      ...+.+.=++.+...+... ....++..-.| ++|+++.|+.+....+|.++++++.+.+. .+|  +|.....+.....
T Consensus       115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~Isl~s~  192 (511)
T TIGR00806       115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNIISLVFM  192 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHH
Confidence            6666666555555555555 66677776666 89999999999999999999999999944 444  3555566666777


Q ss_pred             HHHHHHHHHhccCcc
Q 016338          375 FVTTIFWNLYSTGER  389 (391)
Q Consensus       375 ~~~~~~~~~~~~~~~  389 (391)
                      .++.+..+++++.+|
T Consensus       193 ~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       193 TFSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHHhCCCCch
Confidence            777777777765554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.19  E-value=1e-09  Score=102.25  Aligned_cols=152  Identities=15%  Similarity=0.128  Sum_probs=98.4

Q ss_pred             hhh-HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhh--hhhccchHHHHHHHHH
Q 016338            5 VVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP--WAATHSTASLLAVRAF   81 (391)
Q Consensus         5 ~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~r~l   81 (391)
                      +|. +.+++|.+..+.+...+...+...+++++.|+++||+|||+.+.++..+..+......  ....++....+..-.+
T Consensus       266 lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (432)
T PRK10406        266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMC  345 (432)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            455 4466899999999999998888899999999999999999988776655433332111  1111233322222222


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhh-hHHHHhhHHHHHHhhcC-chhHHHHHHHHHHHHHHHHhh
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHL-GNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~l-g~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~  157 (391)
                      .+...+...+....+++|++|+|.|+.++|+.+...++ .....|.+.+.+ +..| |...++..++..++..+..++
T Consensus       346 ~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        346 ALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            33333444455678889999999999999998876554 244477777755 4455 555566555555555444443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.19  E-value=3e-09  Score=98.17  Aligned_cols=170  Identities=13%  Similarity=0.047  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 016338          202 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  281 (391)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  281 (391)
                      ++.++...+...+.........|.+ ++++|.|..+.+++.+...++..++.+..|++.||+|+         |..+..+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~---------r~~~~~g   74 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSY---------KAGILLG   74 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---------hHHHHHH
Confidence            4555666666666666666777766 55599999999999999999999999999999999995         4566667


Q ss_pred             hHhhHHHHHHhhc---CCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhh
Q 016338          282 FIGPGVSLLCLNY---AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV  357 (391)
Q Consensus       282 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~  357 (391)
                      ..+..++......   .++.+......++.+...+...+....+..+..| +++++..++.+...++|..++|.+.+.+.
T Consensus        75 ~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        75 LFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7676666655432   2344444445555555556666666666666666 78999999999999999999999998875


Q ss_pred             ccc-------------------------cchhHHHHHHHHHHHHHHHHH
Q 016338          358 QWL-------------------------GSFQAFLTVTAGLYFVTTIFW  381 (391)
Q Consensus       358 ~~~-------------------------g~~~~~~~~~~~~~~~~~~~~  381 (391)
                      ...                         .+++.+|...++..++..+..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            321                         126777877777666554444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10133 L-fucose transporter; Provisional

Probab=99.19  E-value=3.9e-09  Score=98.27  Aligned_cols=147  Identities=12%  Similarity=0.012  Sum_probs=111.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 016338          201 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  280 (391)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  280 (391)
                      .+....+..+...+.........|.+ ++.+|.|+.+.++..+...++..++.++.|++.||+|+         |+.+..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~---------r~~l~~   96 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY---------KAGIIT   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---------HHHHHH
Confidence            34556666677777777788888877 66699999999999999999999999999999999995         456666


Q ss_pred             HhHhhHHHHHHh---hcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHh
Q 016338          281 GFIGPGVSLLCL---NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYF  356 (391)
Q Consensus       281 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l  356 (391)
                      +..+..++....   ...++........++.+...+...+.......+..| +++...++..+....+|..++|.+.+.+
T Consensus        97 g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133         97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777666553   234555555555555555556666666666777777 4555678999999999999999988765


Q ss_pred             h
Q 016338          357 V  357 (391)
Q Consensus       357 ~  357 (391)
                      .
T Consensus       177 ~  177 (438)
T PRK10133        177 I  177 (438)
T ss_pred             H
Confidence            4

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.18  E-value=2.8e-10  Score=106.33  Aligned_cols=123  Identities=17%  Similarity=0.202  Sum_probs=105.0

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHH
Q 016338           15 SSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMS   94 (391)
Q Consensus        15 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~   94 (391)
                      ++.+.+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+. .++.+.+.+..++.|++.+...+...
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  333 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA-GSNLPLILVLIILAGFGQNFVTGLVW  333 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888888899999999999999999999999999998888877766332 24567777888899999999889999


Q ss_pred             HHhhhhcC-------ccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCch
Q 016338           95 TLTSRWFP-------SHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGIS  138 (391)
Q Consensus        95 ~~i~~~~~-------~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr  138 (391)
                      ++++|..|       ++++|...++.+....+|..+++.+.+.+.+..||.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99998865       456799999999999999999999999998877763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00896 CynX cyanate transporter

Probab=99.17  E-value=9.6e-10  Score=99.77  Aligned_cols=149  Identities=15%  Similarity=0.063  Sum_probs=105.9

Q ss_pred             HHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCch
Q 016338          219 LLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP  298 (391)
Q Consensus       219 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (391)
                      ....+|.+.++ +|+|..+.++..+...++..++.+..|++.||+++|         +.+..+.....++.... ..++.
T Consensus        19 ~~~~lp~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~~~~~~~~~~~-~~~~~   87 (355)
T TIGR00896        19 VGPLLPQIRSA-LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEE---------RSVAAGLLLIAAGILIR-SAPGT   87 (355)
T ss_pred             CcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCch---------HHHHHHHHHHHHHHHHH-HhccH
Confidence            34566766665 899999999999999999999999999999999965         33444554444444444 33444


Q ss_pred             hHHHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccc-hhHHHHHHHHHHHHH
Q 016338          299 AVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS-FQAFLTVTAGLYFVT  377 (391)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~  377 (391)
                      +.......+.+...+...+.......+..|++|+++.+..+....+|..+++.+.+.+.+..+. ++..|...++..++.
T Consensus        88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            4444433333333344444455566777788999999999999999999999999999877543 677776665544444


Q ss_pred             H
Q 016338          378 T  378 (391)
Q Consensus       378 ~  378 (391)
                      .
T Consensus       168 ~  168 (355)
T TIGR00896       168 L  168 (355)
T ss_pred             H
Confidence            3

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.17  E-value=6.5e-10  Score=98.04  Aligned_cols=145  Identities=19%  Similarity=0.251  Sum_probs=124.7

Q ss_pred             HHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhc
Q 016338            9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGV   88 (391)
Q Consensus         9 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~   88 (391)
                      .+++|++..++..+.-...+..+++++++|++.||+|.|+++.++.++..+.++..  .+...-..+.+.-.+.|...|.
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~--~~~~~~~~f~i~gll~g~s~G~  357 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYL--IFLEGELDFWILGLLVGTSLGG  357 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHH--HHccccHHHHHHHHHHHHhcch
Confidence            45899999999999999999999999999999999999999999999988888765  3335566667778899999999


Q ss_pred             hhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC-chhHHHHHHHHHHHHHHHH
Q 016338           89 AMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTW  155 (391)
Q Consensus        89 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~  155 (391)
                      .+..+.++.++..|++|-++.+|+++.....+..+||.+.+.+.+..| -|..+....++..+..++.
T Consensus       358 ~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         358 AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            999999999999999999999999999999999999999999888654 6666666665555544443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.16  E-value=4.6e-08  Score=89.14  Aligned_cols=328  Identities=12%  Similarity=0.026  Sum_probs=181.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhh----hhc--c----chHHH---HHHHHHHHhh
Q 016338           19 LGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW----AAT--H----STASL---LAVRAFFGLA   85 (391)
Q Consensus        19 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----a~~--~----~~~~~---~~~r~l~G~g   85 (391)
                      .+...-.-.+...+.++..|.+.||..|.++...+.+..-++..++..    .+.  +    +-+..   ++.-.+.|.-
T Consensus        40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i  119 (432)
T PF06963_consen   40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI  119 (432)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence            344444555667788899999999999999877776554333222211    111  1    11111   2212222221


Q ss_pred             hhc-hhhhHHHHhhhhc------CccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhc
Q 016338           86 EGV-AMPAMSTLTSRWF------PSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus        86 ~~~-~~~~~~~~i~~~~------~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      .-. ......+.=.||.      +++++.+..+...-.--..-+++|++.|.+.+..+.+....+.+...++...+-+++
T Consensus       120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~  199 (432)
T PF06963_consen  120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL  199 (432)
T ss_pred             HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            111 1112222224553      244566777777777778899999999999998888888887777777655544433


Q ss_pred             c-------ccCCCCCCCCChhHHHHHHcCCCcc-----------cccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHH
Q 016338          159 V-------TNDPCNSPFVSKSELRLIQAGKSDS-----------VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL  220 (391)
Q Consensus       159 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (391)
                      .       |+-.++++..++++.+..++..+++           .-++...+++..+++|.+. ..+...+.++...++.
T Consensus       200 l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfl-as~alalLY~TVLsf~  278 (432)
T PF06963_consen  200 LARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFL-ASFALALLYFTVLSFG  278 (432)
T ss_pred             HHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHH-HHHHHHHHHHHHhcCc
Confidence            2       2211111111111110000000000           0011124556666666444 4455555555566677


Q ss_pred             HhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCch--
Q 016338          221 SWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP--  298 (391)
Q Consensus       221 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  298 (391)
                      .....|+.++ |+++...|.+-+.-.+.++.+..+..++.+|+|..+...     .-+..-.....++...+....++  
T Consensus       279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~-----~~l~~q~~~L~~~v~~~~~~~~~~~  352 (432)
T PF06963_consen  279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGL-----WSLWWQWVCLALCVVSFWAPGSPFS  352 (432)
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH-----HHHHHHHHHHHHHHHHHhcCCCCch
Confidence            8888999995 999999999999999999999999999999999652111     11111122222222222222222  


Q ss_pred             hHHHHHHHHHHH----hhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHh
Q 016338          299 AVAAVLITIALS----LSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT  353 (391)
Q Consensus       299 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~  353 (391)
                      ......++.+..    ..-.+-.....+.+|..| ++||+..|.-+...++...+.-.+.
T Consensus       353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222222    122233344555666555 8999999999999988776655443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.16  E-value=3e-09  Score=98.23  Aligned_cols=168  Identities=10%  Similarity=0.067  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHH-----HhhccchhHHHHHHHHH
Q 016338          206 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL-----IKAGYSLTLVRKIMQSI  280 (391)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~~~~~~~~~~~~~~  280 (391)
                      ...++.+...+.....-+|.|+++ .|+|.++.|++......  .+..++.|.++||+     |||        |..+..
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~r--------r~~l~~   73 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRR--------RGWLLL   73 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcc--------hhHHHH
Confidence            455666777778888999999999 69999999998666554  58889999999999     553        344445


Q ss_pred             HhHhhHHHHHHhhcCC---chhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHh
Q 016338          281 GFIGPGVSLLCLNYAK---SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYF  356 (391)
Q Consensus       281 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l  356 (391)
                      +....++....+...+   +.+......++.........+...++..|..| |+|+++.++......+|..+++.+.+.+
T Consensus        74 ~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l  153 (402)
T PRK11902         74 TQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL  153 (402)
T ss_pred             HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            5555554444444432   23333333333445555566777888888777 6799999999998899999999999999


Q ss_pred             hccccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          357 VQWLGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       357 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      .+...+++..|++.++..++..+.....
T Consensus       154 ~~~~~gw~~~f~i~a~~~l~~~l~~~~~  181 (402)
T PRK11902        154 ADRVLGWGNTYLLMAGLMLAGALTTLWA  181 (402)
T ss_pred             HhcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            8864238999988887776665544433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.15  E-value=7.3e-10  Score=85.78  Aligned_cols=135  Identities=16%  Similarity=0.111  Sum_probs=99.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhh
Q 016338          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLL  321 (391)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (391)
                      .+...++..++.+..+++.||+++|         ..+..+.....+........++.+.......+.....+...+....
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   74 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRK---------PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAA   74 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchh---------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3455677888999999999999854         3444555555555555555555555555555555555555666777


Q ss_pred             hhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          322 NIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       322 ~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      ...|..| ++|++..+..+....++..++|.+.+.+.+..+ ++..+.+......++.+......+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        75 LIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             HHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCC
Confidence            7788777 789999999999999999999999999998877 888888877777777666555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.13  E-value=2.9e-09  Score=93.89  Aligned_cols=176  Identities=16%  Similarity=0.118  Sum_probs=120.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  279 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  279 (391)
                      |+++.-.+.....+..++.+....+.+ ++++|+|+.|.+++.++..+.+.+.+++.|.+.||+|.|         +...
T Consensus        14 ~~L~~S~~af~v~F~VW~l~s~l~~~i-~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR---------~~~~   83 (417)
T COG2223          14 RNLWLSTLAFDVGFMVWTLFSPLGVFI-KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGR---------KWTI   83 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCch---------HHHH
Confidence            445555555555555555555555444 466999999999999999999999999999999999965         3333


Q ss_pred             HHhHhhHHHHHHhhcCC--chhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHh
Q 016338          280 IGFIGPGVSLLCLNYAK--SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYF  356 (391)
Q Consensus       280 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l  356 (391)
                      .+.++..+-.+......  ........+.+..+..+..........++.+| |++|.+.|+.. .+++|..+...+.+.+
T Consensus        84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223          84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence            44444444433333322  22223333333344445555666667777777 89999999999 9999999999999999


Q ss_pred             hccccc--hhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          357 VQWLGS--FQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       357 ~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      ....|.  ++....+.....++..+..++..+
T Consensus       163 ~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~  194 (417)
T COG2223         163 AVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN  194 (417)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            988773  667777777777776666655443

>TIGR00898 2A0119 cation transport protein

Probab=99.12  E-value=1.7e-09  Score=103.14  Aligned_cols=140  Identities=16%  Similarity=0.151  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHHHHhhhh
Q 016338           21 IVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRW  100 (391)
Q Consensus        21 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~  100 (391)
                      +......+....+.+..+++.||+|||+.+.++.++.+++.++..+....+.+...+.-++.+++.+...+....+.+|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33344556677888999999999999999999999888888777443222224555566677777777778889999999


Q ss_pred             cCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCC
Q 016338          101 FPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDP  163 (391)
Q Consensus       101 ~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  163 (391)
                      +|++.|+.++|+.+....+|.+++|.+.+ + +..++..++.+.+...++..+... ++||+.
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~  498 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTL-FLPETK  498 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCC
Confidence            99999999999999999999999999988 3 445677788888877777666554 456644

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.11  E-value=5.5e-09  Score=109.30  Aligned_cols=183  Identities=10%  Similarity=-0.007  Sum_probs=119.4

Q ss_pred             HHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHH----HHhhhCCC-cchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 016338          194 RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIY----FNTVFNVN-LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGY  268 (391)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  268 (391)
                      ++++++++++.+....++..+.......-++.+    +.+..+.+ ....++..+...+..++..++.|+++||+++|  
T Consensus         5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk--   82 (1140)
T PRK06814          5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKA--   82 (1140)
T ss_pred             hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHH--
Confidence            456778888777776666665544332222222    22212221 23466777788888999999999999999975  


Q ss_pred             chhHHHHH--HHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHH
Q 016338          269 SLTLVRKI--MQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLA  345 (391)
Q Consensus       269 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g  345 (391)
                           +..  ................ ..++.+.+++..++.+...+...+...+.+.+..| ++++.++|+.++...+|
T Consensus        83 -----~~~~~~~~~~~~~~~~~~~~~-~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig  156 (1140)
T PRK06814         83 -----KLAKILKFAEIGIAALAIYGF-HLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIA  156 (1140)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHH
Confidence                 321  1112222222222222 22556666666666666667777888888888777 88999999999999999


Q ss_pred             HHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          346 AIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       346 ~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      ..+||.++|.+.+..| +...|.......+++.++....+
T Consensus       157 ~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  195 (1140)
T PRK06814        157 ILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIP  195 (1140)
T ss_pred             HHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999877 77777555555555554444443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.10  E-value=2.5e-09  Score=96.18  Aligned_cols=149  Identities=11%  Similarity=0.130  Sum_probs=129.2

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHH
Q 016338           15 SSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMS   94 (391)
Q Consensus        15 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~   94 (391)
                      ++...|.+.+...+.-++...+..++.+|+|.|+.++++..+.++=..++++  ++|.+.+...+.+.|+-.+.......
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~--~~~~~~i~~~klLH~~e~~l~lva~f  334 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF--ATNPWVISLIKLLHALEFPLLLVAAF  334 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh--hcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456899999999999999999999999999999999999999998888854  49999999999999999999999999


Q ss_pred             HHhhhhcCccchhhHHHHH-HhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCCCC
Q 016338           95 TLTSRWFPSHERASAIGIC-MGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCN  165 (391)
Q Consensus        95 ~~i~~~~~~~~rg~~~~~~-~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~  165 (391)
                      .++++.+|+|-.++...+. +...++|..+.+.++|.+.|+.|.+.+|++.+.+.++..++..+.+++++++
T Consensus       335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            9999999988777777774 7899999999999999999999999999999999888888888777665544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.09  E-value=1.4e-07  Score=84.43  Aligned_cols=318  Identities=17%  Similarity=0.147  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHHHHhhh
Q 016338           20 GIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSR   99 (391)
Q Consensus        20 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~   99 (391)
                      +.+.-+--+...+..+.+.++.+|+..+.=......+..++.++.  +++++.+.-+++-.+.+++.|........+.. 
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~v--a~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-  138 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLV--AFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-  138 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhhe--eeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence            445555556667777788889999886655666666778888888  55599999999999999999998877777644 


Q ss_pred             hcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCc--hhHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhH----
Q 016338          100 WFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGI--SGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSE----  173 (391)
Q Consensus       100 ~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gw--r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  173 (391)
                      .+++    ..++-++++.+.+.++|+..-..+.+ .|+  |..+.+...+.++..+..++.+|+++.+++..++++    
T Consensus       139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~  213 (402)
T PF02487_consen  139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEA  213 (402)
T ss_pred             hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCcc
Confidence            5653    35788888888888888877655555 554  778888888877766666666654433222111111    


Q ss_pred             -HHHHHcCCC-cccccCCCccHHHhhc-CCchHHHHHHHHHHHHHHHHHHH-hhHHHHH-hhhCCCcchhhHHhhhHHHH
Q 016338          174 -LRLIQAGKS-DSVKKRNPPSLRHLLS-KLPSWTVIIANITNNWGYFVLLS-WMPIYFN-TVFNVNLKQAAWFSAVPWGT  248 (391)
Q Consensus       174 -~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~  248 (391)
                       ++..+++.. .+.+...+...++-++ -|......+-.+..++..+..+. ..|...- ....-...+..+....+.++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~G  293 (402)
T PF02487_consen  214 EDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLG  293 (402)
T ss_pred             cccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHH
Confidence             000111000 0111111222332222 12222244444445555554443 2333221 21111223444555666666


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHH---HhhcCCchhHHHHHHHHHHHhhhhcccch-hhhhh
Q 016338          249 MAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLL---CLNYAKSPAVAAVLITIALSLSSFSQAGY-LLNIQ  324 (391)
Q Consensus       249 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  324 (391)
                      ..++|--...+  |++         +.+++.+....-.+.++   .+.+.++.+..+..++.-+..++..+... ..+..
T Consensus       294 VFISRSS~~~~--rir---------~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~  362 (402)
T PF02487_consen  294 VFISRSSLPFF--RIR---------RLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISE  362 (402)
T ss_pred             Hhhhhcceeee--ehh---------hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            66665432221  221         22222222222211111   12233455555555555445555444444 44455


Q ss_pred             hccccchhHHHHHHHHHHHHHHHHHHHHhhHh
Q 016338          325 EIAPDCAGFLHGIANSAGTLAAIISTIGTGYF  356 (391)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l  356 (391)
                      |..+++|..++|.....-..|..++..+.-.+
T Consensus       363 ~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  363 EVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             cCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            56669999999999888888877777665443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.07  E-value=3.6e-09  Score=95.48  Aligned_cols=184  Identities=11%  Similarity=0.139  Sum_probs=150.0

Q ss_pred             HhhcCC-chHHHHHHHHHHHHHHHHHHHhhHHHHHhhhC----CCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 016338          195 HLLSKL-PSWTVIIANITNNWGYFVLLSWMPIYFNTVFN----VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYS  269 (391)
Q Consensus       195 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~  269 (391)
                      ..+++| .++.+...-+.--++++++...+..|+..+.+    +|++++.-+...+..-.-+..+++||++||+-.    
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG----   90 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLG----   90 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence            344544 57777788888889999999999999988888    999999988888888888889999999999743    


Q ss_pred             hhHHHHHHHHHHhHhhHHHHHHhhcCC--chhHHHHHHHHHHHhhhhcccchhhhhhhccc--c-chhHHHHHHHHHHHH
Q 016338          270 LTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP--D-CAGFLHGIANSAGTL  344 (391)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~g~~~~~~~~  344 (391)
                          ++..+.++.+++.++.+++...+  ......+...+.....+..-+.......|.+|  | +|-.+.++.....++
T Consensus        91 ----~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNi  166 (498)
T COG3104          91 ----TRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINI  166 (498)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeeh
Confidence                44566788888888888887764  45555555555556667777888888888776  2 467788888888999


Q ss_pred             HHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccC
Q 016338          345 AAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTG  387 (391)
Q Consensus       345 g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (391)
                      |+.++|.+.+++.++.| |+..|...++-+.++.+.++..+|.
T Consensus       167 Gsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~r~  208 (498)
T COG3104         167 GSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGRRH  208 (498)
T ss_pred             HHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHccch
Confidence            99999999999999999 9999999999999999988887754

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.06  E-value=1.4e-09  Score=101.80  Aligned_cols=155  Identities=19%  Similarity=0.201  Sum_probs=136.2

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcC--chHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYG--GKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~   80 (391)
                      ..+|...++.+.+..+.+.+.++..+...++.+..|.++|+..  ++....++++..+++.+.+++  .++++.+...-.
T Consensus       319 ~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~--~~~~~~l~~~~~  396 (509)
T KOG2504|consen  319 VYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF--ATTYVGLIVFSI  396 (509)
T ss_pred             HHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHH
Confidence            3567888899999999999999999999999999999999988  445667777777777777744  499999999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC-chhHHHHHHHHHHHHHHHHhhcc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTSKV  159 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~  159 (391)
                      +.|+..|........++.|..+.++...+.|+.....+++..+||++.+.+.+..| |...|+..++..++....++...
T Consensus       397 ~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  397 LFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999988888899999999999999999999999999999999999988877 99999999888887766555443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.06  E-value=9.6e-09  Score=94.29  Aligned_cols=161  Identities=17%  Similarity=0.207  Sum_probs=127.7

Q ss_pred             hhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhh-ccchH------HHHHH
Q 016338            6 VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA-THSTA------SLLAV   78 (391)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~-~~~~~------~~~~~   78 (391)
                      ..+-++-|.+..+..+..........+..+.+..+.||+|||+.++.+..+..+..++..... -.+..      ..+++
T Consensus       294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~  373 (485)
T KOG0569|consen  294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAA  373 (485)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            356677799999999999999999999999999999999999999999999988887764431 11111      12333


Q ss_pred             HHHHHhhhhc-hhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhh
Q 016338           79 RAFFGLAEGV-AMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        79 r~l~G~g~~~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  157 (391)
                      .++..++.+. .-|...-+.+|.+|++.|..++++......+...+-...-..+.+.+|= ..|....+..++..+..++
T Consensus       374 ~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~  452 (485)
T KOG0569|consen  374 IFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR  452 (485)
T ss_pred             HHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH
Confidence            3333333332 2378888999999999999999999999999988888888888777775 7888889999999999999


Q ss_pred             ccccCCCCCC
Q 016338          158 KVTNDPCNSP  167 (391)
Q Consensus       158 ~~~~~~~~~~  167 (391)
                      .+||++.+..
T Consensus       453 ~lPETkgr~~  462 (485)
T KOG0569|consen  453 YLPETKGRTP  462 (485)
T ss_pred             hCcccCCCCH
Confidence            9999876543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.06  E-value=1.1e-10  Score=103.61  Aligned_cols=177  Identities=11%  Similarity=0.026  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHh
Q 016338          203 WTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGF  282 (391)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  282 (391)
                      ..+.+.......-.+.+....+. .++.+|.+....|++.....+...+..++.|++.||++         |+.++.++.
T Consensus        36 ~il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryN---------R~~v~~vG~  105 (493)
T KOG1330|consen   36 VILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYN---------RKRVIAVGI  105 (493)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcC---------cceEEeeHH
Confidence            33444444444444444443333 34458999999999999999999999999999999999         556667777


Q ss_pred             HhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc
Q 016338          283 IGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  361 (391)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  361 (391)
                      .+=.++.+..+.....|...++=.+.+.....+.+...+.+.|.+| ++|++..++.+....+|..+|-...+.+.+..+
T Consensus       106 ~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  106 FIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            7777777777766666666666666666677788888999999999 799999999999999999999999999999988


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhccCcc
Q 016338          362 SFQAFLTVTAGLYFVTTIFWNLYSTGER  389 (391)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (391)
                      +|++.|...+++.++..++..++.++++
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            8999999999999999888877776654

>PRK09848 glucuronide transporter; Provisional

Probab=99.06  E-value=3e-09  Score=99.69  Aligned_cols=128  Identities=20%  Similarity=0.191  Sum_probs=103.1

Q ss_pred             HHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhch
Q 016338           10 AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVA   89 (391)
Q Consensus        10 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~   89 (391)
                      +.+|.++...++......++..++.++.+++.||+|+|+.+.++..+..++.++..+...++.+.+.+..++.|+|.+..
T Consensus       257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~  336 (448)
T PRK09848        257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT  336 (448)
T ss_pred             eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence            34565555555555555677888999999999999999999999998888877764432346777777888999999999


Q ss_pred             hhhHHHHhhhhcCcc-------chhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCc
Q 016338           90 MPAMSTLTSRWFPSH-------ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGI  137 (391)
Q Consensus        90 ~~~~~~~i~~~~~~~-------~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gw  137 (391)
                      .+...++.+|..|.+       ++|...+..+....+|..+|+.+.+.+.+..|+
T Consensus       337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999888654       358999999999999999999999988776665

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.05  E-value=8.6e-09  Score=95.51  Aligned_cols=179  Identities=11%  Similarity=0.049  Sum_probs=127.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHH----HHhhccchhHHHHH
Q 016338          201 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDS----LIKAGYSLTLVRKI  276 (391)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~~~~~~  276 (391)
                      +........+...+.+.....+.+.|+++ +|.++...+.+.....+.+.+.+++.|+++||    +|||        +.
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR--------rp   75 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR--------RP   75 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh--------HH
Confidence            34455666666777888888899999877 89999999999999999999999999999995    8874        44


Q ss_pred             HHHHHhHhhHHHHHHhhcCCch-----------------hHHHHHHHHHHHhhhhcccchhhhhhhccc-cch--hHHHH
Q 016338          277 MQSIGFIGPGVSLLCLNYAKSP-----------------AVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCA--GFLHG  336 (391)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~g  336 (391)
                      .+..+.....+.+.++...++.                 ........+.-.......+...++..|..| ++|  +.+.+
T Consensus        76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~  155 (477)
T TIGR01301        76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA  155 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence            4555555566665555543321                 111222223333444455566778888877 433  68999


Q ss_pred             HHHHHHHHHHHHHHHHhhHh--hccc------------cchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          337 IANSAGTLAAIISTIGTGYF--VQWL------------GSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       337 ~~~~~~~~g~~i~~~~~g~l--~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      +.+....+|+.+++.+.+..  .+..            .+++..|.+.+++.+++.+...+..|++
T Consensus       156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            99999999999999998865  2221            1477889998888888888777665543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.05  E-value=6e-09  Score=92.29  Aligned_cols=129  Identities=19%  Similarity=0.201  Sum_probs=106.0

Q ss_pred             hCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhh
Q 016338           12 FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMP   91 (391)
Q Consensus        12 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~   91 (391)
                      +|.++++.+...+.+..+..++.+..+++.||+|+||.+.++..+..++.++..  ..++.. ....-.+.|++.+..+|
T Consensus       173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~--~~~~~~-~~~~~~l~g~~~s~i~P  249 (310)
T TIGR01272       173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAA--LTHGYV-AMWFVLALGLFNSIMFP  249 (310)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH--HcCCHH-HHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999888888777776552  224332 23455688999999999


Q ss_pred             hHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHH
Q 016338           92 AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFS  145 (391)
Q Consensus        92 ~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~  145 (391)
                      ...+...+..| ++.+++.++. ....+|..+.|++.|.+.|..|.+..|++..
T Consensus       250 ~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       250 TIFSLALNALG-RHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHHHHHHhhhh-hhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence            99999999886 4456666765 5677999999999999999999888887544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=9.5e-10  Score=95.87  Aligned_cols=147  Identities=17%  Similarity=0.106  Sum_probs=127.0

Q ss_pred             hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHH
Q 016338          231 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALS  310 (391)
Q Consensus       231 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (391)
                      .+-+..+.|++++...+.+.+.+++.|.+.||+|         ++..+.+++..+.....++.+.++....++.=.+-+.
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iG---------y~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgv  171 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIG---------YKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGV  171 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhc---------cccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhh
Confidence            3445678999999999999999999999999999         5578889999999999999998888877777666666


Q ss_pred             hhhhcccchhhhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccC
Q 016338          311 LSSFSQAGYLLNIQEIAP--DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTG  387 (391)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (391)
                      ...+....-.++..+.+|  ++|++++|..-....+|-.++|+++|.++|..| +..+|.+.++++++...+-++..+.
T Consensus       172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEP  249 (464)
T ss_pred             hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCc
Confidence            667777777888888888  367999999999999999999999999999999 9999999999998888876665443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.04  E-value=1.2e-08  Score=92.70  Aligned_cols=161  Identities=15%  Similarity=0.045  Sum_probs=107.9

Q ss_pred             HHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC-
Q 016338          218 VLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK-  296 (391)
Q Consensus       218 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  296 (391)
                      ......|.+.++ .|+|.++.+..... .+...+ .++.|.+.||++.|+..+   ||..+..+.+..++........+ 
T Consensus         6 ~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Gr---r~~~l~~~~~~~~~~~~~l~~~~~   79 (356)
T TIGR00901         6 LVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGR---RRSWLVLTQVLLLSLLLILSFLVP   79 (356)
T ss_pred             hHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCc---cHHHHHHHHHHHHHHHHHHHcCCc
Confidence            345567777777 79999999988644 444444 889999999983210000   34444455555555544444432 


Q ss_pred             --chhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccc-------hhHH
Q 016338          297 --SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS-------FQAF  366 (391)
Q Consensus       297 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~-------~~~~  366 (391)
                        +.+......++.........+...++..|..| |+|+.+.|+......+|..+++.+.+.+.+..|.       |+..
T Consensus        80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~  159 (356)
T TIGR00901        80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI  159 (356)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence              22233333333344445556667777888776 8999999999999999999999999999887663       7888


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 016338          367 LTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~  384 (391)
                      |.+.++..++..+..+..
T Consensus       160 f~i~ai~~l~~~~~~~~~  177 (356)
T TIGR00901       160 FFWTALLILPGLLVTLFL  177 (356)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            888888777766554443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.03  E-value=1.4e-08  Score=92.65  Aligned_cols=155  Identities=21%  Similarity=0.315  Sum_probs=123.4

Q ss_pred             hhHHHHhC-CChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHH----HHHH
Q 016338            6 VPLAAKFG-WSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLL----AVRA   80 (391)
Q Consensus         6 ~~i~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~r~   80 (391)
                      +...+|.| .+.+..+.+.++..++-...-...+++..|+|.|+++.++.+.+++=..+.++. +++.+...    ....
T Consensus       231 ~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~-~~~~~~~~~~~~l~q~  309 (400)
T PF03825_consen  231 SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF-SDPWPFIVALQLLGQL  309 (400)
T ss_pred             HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHh
Confidence            44566777 677788888888888899999999999999999999999999999888887443 24444333    3456


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHh-hhhhhHHHHhhHHHHHHhhcC------chhHHHHHHHHHHHHHH
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMG-GFHLGNVVGLLLTPIMLSTIG------ISGPFILFSSLGLLWLS  153 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~-~~~lg~~~g~~~~~~l~~~~g------wr~~f~~~~~~~~~~~~  153 (391)
                      ++|+..+..+.....++.+..|++.|+++.++++. ..++|..+|..++|++.|++|      |...+.+.+++.++..+
T Consensus       310 lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~  389 (400)
T PF03825_consen  310 LHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILV  389 (400)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999876 578999999999999999876      44456666666666555


Q ss_pred             HHhhcccc
Q 016338          154 TWTSKVTN  161 (391)
Q Consensus       154 ~~~~~~~~  161 (391)
                      +.+...+|
T Consensus       390 ~f~~~fk~  397 (400)
T PF03825_consen  390 LFVILFKP  397 (400)
T ss_pred             HHHhhccC
Confidence            55555444

>PTZ00207 hypothetical protein; Provisional

Probab=99.02  E-value=3.1e-08  Score=93.90  Aligned_cols=159  Identities=11%  Similarity=0.017  Sum_probs=103.2

Q ss_pred             HHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc
Q 016338          215 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  294 (391)
Q Consensus       215 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (391)
                      ..+.+..+.|. +++++|+|..+.+.+.... .......++.|++.||+|+         |.++.++.+...++.+....
T Consensus        42 ~~y~fsv~s~~-L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~---------R~vllig~ll~~iG~ll~al  110 (591)
T PTZ00207         42 FMYAFNLISGA-MQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGP---------RPIFVLSMTVFCLGTLLFAL  110 (591)
T ss_pred             HHHHHHHHHHH-HHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCc---------HHHHHHHHHHHHHHHHHHHH
Confidence            33455555554 5566999999998887653 3334566788999999994         46666777777777666655


Q ss_pred             C------CchhHHHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHH
Q 016338          295 A------KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLT  368 (391)
Q Consensus       295 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~  368 (391)
                      .      .+.+.+.+..++.+...+...+.......+.+|++||++.|+......+|+++.+.+...+.+. + +...++
T Consensus       111 a~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-~-~~~~fl  188 (591)
T PTZ00207        111 TFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-N-TSAYFF  188 (591)
T ss_pred             HhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-HHHHHH
Confidence            4      3444444444444444444445555566777899999999999999999998655555444432 2 556666


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 016338          369 VTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~  386 (391)
                      +.++..++..++...+.+
T Consensus       189 ~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        189 FLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHHHHHHHHHhhee
Confidence            666666665555544433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.01  E-value=5e-09  Score=98.75  Aligned_cols=146  Identities=13%  Similarity=0.099  Sum_probs=109.8

Q ss_pred             hhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc--CCchhHHHHHHHH
Q 016338          230 VFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITI  307 (391)
Q Consensus       230 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  307 (391)
                      ++++++.+.|.+.+.+.++..+++++.|++.||+|+|         ..+..+.++..+...+...  ..+.....+.-++
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r---------~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~  140 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFK---------WSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVI  140 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcc---------hhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            4788999999999999999999999999999999964         3444455444444443322  2233444444445


Q ss_pred             HHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccc-cchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          308 ALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL-GSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      .+...+...+....+..+..| ++|+++.|+.+....+|..++|.+.+.+.+.. | ++..|.+.++..++..++++...
T Consensus       141 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~  219 (465)
T TIGR00894       141 QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFP  219 (465)
T ss_pred             HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHh
Confidence            555556667777778888777 89999999999999999999999999999884 6 88888888887776666555443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.01  E-value=2.2e-09  Score=95.37  Aligned_cols=360  Identities=15%  Similarity=0.136  Sum_probs=189.7

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhh----hcCchHHHHH-HHHHHHHHHhhhhhhhccch------
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVD----KYGGKKVLAW-GVALWSLSTLLTPWAATHST------   72 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~-~~~~~~~~~~~~~~a~~~~~------   72 (391)
                      .+|+..++.|++....+.+--...+...+.+|+.|..+|    ||||||.++. +.+...++.++.+++  .+.      
T Consensus        54 y~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~a--aDig~~lgd  131 (498)
T KOG0637|consen   54 YLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYA--ADIGLLLGD  131 (498)
T ss_pred             cccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhH--hhhhHHhcC
Confidence            356778888988888888777777888899999999999    5898875554 455566666666555  322      


Q ss_pred             -----------HHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhh-HHHHHHhhhhhhHHHHhhHHHHHHhhcCchh-
Q 016338           73 -----------ASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERAS-AIGICMGGFHLGNVVGLLLTPIMLSTIGISG-  139 (391)
Q Consensus        73 -----------~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~-~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~-  139 (391)
                                 ..++++--+.-+..-.....+.+++.|...++++.+ +.+......++|..+|..++++.    +|+- 
T Consensus       132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~----~~~~~  207 (498)
T KOG0637|consen  132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL----GLYKI  207 (498)
T ss_pred             CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc----CceEE
Confidence                       233444444455555667788999999987666666 99999999999999999888643    3322 


Q ss_pred             --------HHHHHHHHHHHHHHHHhhccccC------CCCCCCCChhHHHHHHcCCCcccccCCCccHHHhh-cCCchHH
Q 016338          140 --------PFILFSSLGLLWLSTWTSKVTND------PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLL-SKLPSWT  204 (391)
Q Consensus       140 --------~f~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  204 (391)
                              .+.....+....+.-..+..+++      |++++..++.+ +...+..+.....+..   ..+. ..|..|.
T Consensus       208 ~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~-~~~~~~~~~~~~~e~f---G~~~~mpr~m~~  283 (498)
T KOG0637|consen  208 FPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGT-TARSKSSKLPFLLEIF---GALKVMPRPMRM  283 (498)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCcc-cccccccCcchHHHHh---chHhhCChhHHH
Confidence                    11111111111111111111111      11111111100 0000000000000001   1111 2356788


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHh-hhCCCcch----------------hhHHhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 016338          205 VIIANITNNWGYFVLLSWMPIYFNT-VFNVNLKQ----------------AAWFSAVPWGTMAVSGYMAGKASDSLIKAG  267 (391)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~----------------~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  267 (391)
                      .++...+.+.+.+.+..|.+.++-+ .++-++..                -.+=+.+..+...+.+....++.||+|.|+
T Consensus       284 L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~  363 (498)
T KOG0637|consen  284 LLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRK  363 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcce
Confidence            8888888888888888888877644 34433221                112244556667777888888999998553


Q ss_pred             cchhHHHHHHHHHHhHhhHHHHHHh-hc------CCc-----hhHHHHHHHHHHHhhhhcccchhhhhh-hccc--cchh
Q 016338          268 YSLTLVRKIMQSIGFIGPGVSLLCL-NY------AKS-----PAVAAVLITIALSLSSFSQAGYLLNIQ-EIAP--DCAG  332 (391)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~  332 (391)
                      ......+...+..++..+....... ..      ...     ++......-....-........++..+ +..+  .-+|
T Consensus       364 ~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G  443 (498)
T KOG0637|consen  364 RYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQG  443 (498)
T ss_pred             EEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCccccccccccccccccccCccCCCC
Confidence            2221111111111111111100000 00      000     000000000000000111111222221 1122  2347


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHH
Q 016338          333 FLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGL  373 (391)
Q Consensus       333 ~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~  373 (391)
                      ...|+.|..-.+.+++.....|.+.|..|+-...-...+..
T Consensus       444 ~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~  484 (498)
T KOG0637|consen  444 LDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAV  484 (498)
T ss_pred             ceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHH
Confidence            78888888889999999999999999887544443333333

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.00  E-value=1.9e-08  Score=105.52  Aligned_cols=156  Identities=12%  Similarity=0.005  Sum_probs=110.6

Q ss_pred             HhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcc--hhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhH
Q 016338          195 HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK--QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTL  272 (391)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~  272 (391)
                      +.++++.++...+..++..+........+..++.+.++.+..  ..++..++..++..++.++.|+++||+|||      
T Consensus         4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk------   77 (1146)
T PRK08633          4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKN------   77 (1146)
T ss_pred             chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHH------
Confidence            456777888888777777776666665565566554555433  357778888889999999999999999964      


Q ss_pred             HHHHHHHHHhHhhHHHH---HHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHH
Q 016338          273 VRKIMQSIGFIGPGVSL---LCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAII  348 (391)
Q Consensus       273 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i  348 (391)
                         .++..+..+..+..   ......++.+.+.+..++.+...+...+....++.+..| ++|++++|+.+....+|..+
T Consensus        78 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~l  154 (1146)
T PRK08633         78 ---RVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILA  154 (1146)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHH
Confidence               33333333222222   122223344555555555556666777777888888877 89999999999999999999


Q ss_pred             HHHHhhHhhcc
Q 016338          349 STIGTGYFVQW  359 (391)
Q Consensus       349 ~~~~~g~l~~~  359 (391)
                      +|.+++.+.+.
T Consensus       155 g~~l~~~l~~~  165 (1146)
T PRK08633        155 GTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.00  E-value=1.8e-08  Score=89.16  Aligned_cols=148  Identities=38%  Similarity=0.596  Sum_probs=119.7

Q ss_pred             chhhHHHHhCCCh--hhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            4 AVVPLAAKFGWSS--SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         4 ~~~~i~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ..+.+.++++.+.  .+.++..+.+.++..++.++.|.+.||+|||+.+..+......+.+..++...++.+.+++.|+.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (338)
T COG0477          24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLL  103 (338)
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            4566677777666  58999999999999999999999999999998888888765565555543311248999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCc-cchhhHHHHHHh-hhhhhHHHHhhHHHHHHhh--cCchhHHHHHHHHHHHH
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPS-HERASAIGICMG-GFHLGNVVGLLLTPIMLST--IGISGPFILFSSLGLLW  151 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~-~~rg~~~~~~~~-~~~lg~~~g~~~~~~l~~~--~gwr~~f~~~~~~~~~~  151 (391)
                      +|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+...  .+||..|..........
T Consensus       104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (338)
T COG0477         104 QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL  177 (338)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            9999999999999999999987 689999999888 6888999999877776654  67999777666555443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.98  E-value=7.4e-09  Score=97.13  Aligned_cols=127  Identities=17%  Similarity=0.185  Sum_probs=111.2

Q ss_pred             HHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhh--------ccchHHHHHHHHH
Q 016338           10 AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA--------THSTASLLAVRAF   81 (391)
Q Consensus        10 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~--------~~~~~~~~~~r~l   81 (391)
                      +++|.|+++.|.+.+...++..++....+++.+|++.|+++.++.++.+++.....+..        .++.+......++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            46899999999999999999999999999999999999999999999998886542111        1344455667788


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG  136 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g  136 (391)
                      .+++.+........++.+..|+++++...++.++..++|..+++.+++.+.+..|
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999889999999999999999999999999999999999999999988776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.97  E-value=4.4e-08  Score=81.00  Aligned_cols=346  Identities=12%  Similarity=0.101  Sum_probs=184.4

Q ss_pred             HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhh
Q 016338            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEG   87 (391)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~   87 (391)
                      +-+.++....|+|.+.-..+-..++...+.|.++||-|||+.-+.-++.+.++++--   .++.+-.++++|.+-|+..+
T Consensus        63 LYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK---hSpqYkVLmVGR~LGGiaTs  139 (454)
T KOG4332|consen   63 LYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK---HSPQYKVLMVGRVLGGIATS  139 (454)
T ss_pred             eehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh---cCCceEEEeehhhhhhHHHH
Confidence            345677778899988888888888999999999999999997776666666665532   46899999999999999998


Q ss_pred             chhhhHHHH-hhhhcCccchhhHHHHHH--------hhhhhhHHHHhhHHHHHHhhcC--chhHHHHHHHHHHHHHHHHh
Q 016338           88 VAMPAMSTL-TSRWFPSHERASAIGICM--------GGFHLGNVVGLLLTPIMLSTIG--ISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        88 ~~~~~~~~~-i~~~~~~~~rg~~~~~~~--------~~~~lg~~~g~~~~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~  156 (391)
                      ..+..--+. ++|.-  ++|+.---+..        .+.++-.+++.+.+..+.++++  --.+|-..+....+...+..
T Consensus       140 LLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil  217 (454)
T KOG4332|consen  140 LLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL  217 (454)
T ss_pred             HHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence            877776665 45554  33432222211        2334444555566666666554  44456655544444333322


Q ss_pred             hccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHH-HHHhhHHHHHhhhCCCc
Q 016338          157 SKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFV-LLSWMPIYFNTVFNVNL  235 (391)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~  235 (391)
                      .-..|.-.+.    .++++...+         .+...+.+..|+++.++--+..+.-...+. ..-|.|..--+..+   
T Consensus       218 ~~W~ENygdp----s~~kdlltq---------f~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~---  281 (454)
T KOG4332|consen  218 SSWSENYGDP----SENKDLLTQ---------FKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE---  281 (454)
T ss_pred             hhhhhccCCh----hhhHHHHHH---------hhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCccc---
Confidence            2222222111    111111111         112334555666665544433333333222 22344433222112   


Q ss_pred             chhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc---CCchhHHHHHHHHHHHhh
Q 016338          236 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY---AKSPAVAAVLITIALSLS  312 (391)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  312 (391)
                      .--|.+++.+..+.++|+-+..++..|-..|   ..........+......+.......   ..++....+.++..-...
T Consensus       282 iPhGfiFatFMlASmLGSSla~Rl~s~s~~~---ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cv  358 (454)
T KOG4332|consen  282 IPHGFIFATFMLASMLGSSLASRLLSRSSPK---VESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACV  358 (454)
T ss_pred             CCchhHHHHHHHHHHHhhHHHHHHHhcCCcc---cchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHH
Confidence            2346777777777777776666665553322   1111111111111111111111111   123344455566666667


Q ss_pred             hhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcc--ccchhHHHHHHHHHHHHHHHH
Q 016338          313 SFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW--LGSFQAFLTVTAGLYFVTTIF  380 (391)
Q Consensus       313 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~  380 (391)
                      +.++|...-+-++..| +.|++.+-+...--++-..++-..  .=.|.  .+ -+..|-++.....++.+.
T Consensus       359 GlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLyn--lh~~~~p~~-tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  359 GLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN--LHVDAFPTT-TRNMFGICSAFLFVASIL  426 (454)
T ss_pred             hhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee--cccccCccc-cchhhhhhHHHHHHHHHH
Confidence            7788888888788888 678766555443333332222111  00111  12 345666666666666444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.97  E-value=7e-08  Score=91.06  Aligned_cols=174  Identities=16%  Similarity=0.082  Sum_probs=116.1

Q ss_pred             cCCchHHHHHHHHHH----HHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 016338          198 SKLPSWTVIIANITN----NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLV  273 (391)
Q Consensus       198 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~  273 (391)
                      ++|+++.......+.    ++........++...++ .|-+ .+..++.....++..+..++.|+++|.+|         
T Consensus        38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfG---------  106 (599)
T PF06609_consen   38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFG---------  106 (599)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhc---------
Confidence            445555443333332    22333333445544444 6655 55667777888899999999999999999         


Q ss_pred             HHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHH
Q 016338          274 RKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIG  352 (391)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~  352 (391)
                      ||...+.+.++..++.++....++.........+.+...+... ......+|..| +.|..+.++.....-....++|.+
T Consensus       107 Rr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~i  185 (599)
T PF06609_consen  107 RRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLI  185 (599)
T ss_pred             chHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHH
Confidence            5688888999999999988888877766665555444333332 34445778778 788877776665554555567777


Q ss_pred             hhHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          353 TGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       353 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      ...+..+.+ |++.|++..+...++.+...++
T Consensus       186 a~~~~~~~~-WRw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  186 AQLFAAHSG-WRWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             HHHhccCCC-cchHHHHHHHHHHHHHHHHHHH
Confidence            766655544 9999999888877776654443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.96  E-value=5e-09  Score=101.54  Aligned_cols=160  Identities=12%  Similarity=0.042  Sum_probs=108.2

Q ss_pred             HHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC
Q 016338          217 FVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK  296 (391)
Q Consensus       217 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (391)
                      .++....-+-++++++++..+.|++.+...++..++.++.+++.||.+||+         .+.++.++.+++.++....+
T Consensus        49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~---------~i~~g~ll~~lg~ll~alph  119 (633)
T TIGR00805        49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI---------VIGIGCAIMGLGSFLLSLPH  119 (633)
T ss_pred             HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce---------EEEecHHHHHHHHHHHhChH
Confidence            333333333455569999999999999999999999999999999999653         33344444444444332210


Q ss_pred             -------------------------------------------------c--hhHHHHHHHHHHHhhhhcccchhhhhhh
Q 016338          297 -------------------------------------------------S--PAVAAVLITIALSLSSFSQAGYLLNIQE  325 (391)
Q Consensus       297 -------------------------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (391)
                                                                       +  ...+++.-++.+...+...+....++.|
T Consensus       120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d  199 (633)
T TIGR00805       120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDD  199 (633)
T ss_pred             HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhc
Confidence                                                             0  1122233334444444555666778888


Q ss_pred             ccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccc---------------------cchhHHHHHHHHHHHHHHHHHHH
Q 016338          326 IAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL---------------------GSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       326 ~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~---------------------g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      ..| ++|+...|+.+....+|..+++.+.+.+.+..                     |.|+..|++.+++.++..+.++.
T Consensus       200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777 89999999999999999999999999987643                     22455677777666665555554


Q ss_pred             hc
Q 016338          384 YS  385 (391)
Q Consensus       384 ~~  385 (391)
                      +.
T Consensus       280 ~p  281 (633)
T TIGR00805       280 FP  281 (633)
T ss_pred             Cc
Confidence            44

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.93  E-value=4.3e-08  Score=84.92  Aligned_cols=154  Identities=18%  Similarity=0.140  Sum_probs=125.8

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhc-CchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHH
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G   83 (391)
                      +|.+..|.|+|..+.|++.+...+.+...++....+++|. ++|+..+....++.++.+.+.++  +....+.. -++.|
T Consensus       231 LP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~--P~~~~~lw-~~llG  307 (395)
T COG2807         231 LPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA--PGQLPILW-ALLLG  307 (395)
T ss_pred             HHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh--hhhHHHHH-HHHHh
Confidence            6899999999999999999999999999999999999976 66777788888888888777555  33322222 49999


Q ss_pred             hhhhchhhhHHHHhhhhcCc-cchhhHHHHHHhhhhhhHHHHhhHHHHHHhhc-CchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           84 LAEGVAMPAMSTLTSRWFPS-HERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~-~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      +|.|..++.+...+.+..++ ++-++-.++.+....+=..+||.+.|++.|.. +|+.+....+...+.+.+..+..-|+
T Consensus       308 ~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~r~  387 (395)
T COG2807         308 LGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAGRN  387 (395)
T ss_pred             CccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcchh
Confidence            99999999999999987753 44567777888888888899999999999876 59999999888888877776655433

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.90  E-value=8.4e-08  Score=82.24  Aligned_cols=364  Identities=13%  Similarity=0.074  Sum_probs=224.0

Q ss_pred             HhCCChhhHH-HHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhch
Q 016338           11 KFGWSSSFLG-IVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVA   89 (391)
Q Consensus        11 ~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~   89 (391)
                      +.|++..|+. -+.-...=.+.+.-.+.=.+.|..-.|++++.-.+.......+.  .+.++.+.+=+..+..|...+. 
T Consensus        35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~l--v~g~sV~~mQvlE~FyG~~tAa-  111 (433)
T KOG3810|consen   35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIML--VFGPSVKAMQVLEFFYGPATAA-  111 (433)
T ss_pred             CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHH--HhcCCchheeeehhhcChHHHH-
Confidence            3455555443 22223333455555666678999888998888777777777776  4458888888888888887654 


Q ss_pred             hhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCch--hHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 016338           90 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGIS--GPFILFSSLGLLWLSTWTSKVTNDPCNSP  167 (391)
Q Consensus        90 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (391)
                      ..+.++++-+..|++++.++.+...+..-.|-..|..++..+.+.-.+.  ..=.+ .............++|..+++.-
T Consensus       112 EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~I-SL~~~~ia~~~A~fLP~v~rSl~  190 (433)
T KOG3810|consen  112 EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYI-SLAEVTIAVLLALFLPRVKRSLY  190 (433)
T ss_pred             HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchh-hHHHHHHHHHHHhhCCCCchhhh
Confidence            4778899999999999999999999999999999998888876643322  21111 22222222333334454443211


Q ss_pred             CCChhHHHHHHcCCCcccccC-----------CCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCc-
Q 016338          168 FVSKSELRLIQAGKSDSVKKR-----------NPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL-  235 (391)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-  235 (391)
                      .+.++++....+.++...+.+           -..++.+..+||+.....+-+.+...+++-..+|.-..-++...-+. 
T Consensus       191 f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~  270 (433)
T KOG3810|consen  191 FHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPAN  270 (433)
T ss_pred             hhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchh
Confidence            111111111111111001111           12345667788999888888888888888888887776666421111 


Q ss_pred             chhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhc
Q 016338          236 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFS  315 (391)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (391)
                      .-.|..=++....++++.+..|.+.-++.|.       +..++..+....+-.++.+..+++.|...+..++........
T Consensus       271 vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~  343 (433)
T KOG3810|consen  271 VYNGAVEAVSTLLGAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLT  343 (433)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhh
Confidence            1123344455566777888888887666655       567777777777777777777777777666655554443333


Q ss_pred             -ccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc----------chhHHHHHHHHHHHHHHHHHHHh
Q 016338          316 -QAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG----------SFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       316 -~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                       +........+...|.-|...|+...+.-+-..+-..   .+.|..|          -|..-|.+.+++.+++.......
T Consensus       344 itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~---iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  344 ITIATFQIARNLSSELFGLVFGINTFVALILQSILTL---IVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             hhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheE---EEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence             333444455566678888888877666554444333   3344322          25566888888888886655544


Q ss_pred             ccCc
Q 016338          385 STGE  388 (391)
Q Consensus       385 ~~~~  388 (391)
                      .++.
T Consensus       421 ~~~~  424 (433)
T KOG3810|consen  421 CRRN  424 (433)
T ss_pred             hhcC
Confidence            4433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.88  E-value=2.6e-08  Score=83.07  Aligned_cols=143  Identities=19%  Similarity=0.147  Sum_probs=110.2

Q ss_pred             hHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHH-HHHHHHhhhhhhhccchHHHHHHHHHHHhh
Q 016338            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVA-LWSLSTLLTPWAATHSTASLLAVRAFFGLA   85 (391)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g   85 (391)
                      ..++++|+|+...+-+.+.-..-.++.+++.|.++||+|++...+.+.. ....+....  .  -+++.=..+..+.|+.
T Consensus       290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l--~--Ft~lsPy~~m~~lGLs  365 (459)
T KOG4686|consen  290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGL--F--FTFLSPYTSMTFLGLS  365 (459)
T ss_pred             HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhH--H--hhhccHHHHHHHHhhh
Confidence            4688999999999999998888889999999999999999976665544 444444444  2  2333445677788888


Q ss_pred             hhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC---chhHHHH-HHHHHHHHHH
Q 016338           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG---ISGPFIL-FSSLGLLWLS  153 (391)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g---wr~~f~~-~~~~~~~~~~  153 (391)
                      .+.........++...|+++.|.+.|..++..++|..+-|++.+.+.+.-|   |--.|.+ .+.+++....
T Consensus       366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svg  437 (459)
T KOG4686|consen  366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVG  437 (459)
T ss_pred             HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence            887766678889999999999999999999999999999999999988644   4444444 4444444333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.87  E-value=1.9e-08  Score=87.37  Aligned_cols=132  Identities=18%  Similarity=0.101  Sum_probs=100.3

Q ss_pred             CCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 016338          233 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS  312 (391)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (391)
                      .+..-+|++.+.+.+...+.++..|.++||+|         ||.++.++.+...+...+....++. ..++..=+..+..
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yG---------Rkpvll~c~~~va~s~ll~~~S~~F-~afv~aR~l~Gi~  134 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYG---------RKPVLLACLIGVALSYLLWALSRNF-AAFVLARFLGGIF  134 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhC---------chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhc
Confidence            35567889999999999999999999999999         6688888888888877777766555 3333322223333


Q ss_pred             hhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhc---cccchhHHHHHHHHHH
Q 016338          313 SFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ---WLGSFQAFLTVTAGLY  374 (391)
Q Consensus       313 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~---~~g~~~~~~~~~~~~~  374 (391)
                      ........+++.|+.+ |+|+.+++.+++..++|..+||.++|++.+   ..|++..++....++.
T Consensus       135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i  200 (451)
T KOG2615|consen  135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFI  200 (451)
T ss_pred             cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHH
Confidence            3344556778888877 899999999999999999999999999987   5676666653333333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.83  E-value=1.6e-08  Score=91.71  Aligned_cols=146  Identities=21%  Similarity=0.261  Sum_probs=128.7

Q ss_pred             HHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhc
Q 016338            9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGV   88 (391)
Q Consensus         9 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~   88 (391)
                      .||.+..+...|........+-.+.=++.+++.+|+|+-+++.+++.+..+=.+..++.  +|.|+.+-..+++|+..+.
T Consensus       398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--~n~W~vLPieilqgit~al  475 (618)
T KOG3762|consen  398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--QNPWMVLPIEILQGITHAL  475 (618)
T ss_pred             HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--cCchheeeHHHHHHHHHHH
Confidence            35666667777877788888888889999999999999999999999999988888666  9999999999999999999


Q ss_pred             hhhhHHHHhhhhcCccchhhHHHHHH-hhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHh
Q 016338           89 AMPAMSTLTSRWFPSHERASAIGICM-GGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        89 ~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  156 (391)
                      .+.+..++++...||+-|..+-++.+ ...++|--+|.++||.+.+.+|=|..|...++.+++..++..
T Consensus       476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998876 567899999999999999999999999998887776555443

>PRK09669 putative symporter YagG; Provisional

Probab=98.82  E-value=6.6e-08  Score=90.52  Aligned_cols=173  Identities=14%  Similarity=0.036  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhh
Q 016338          206 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP  285 (391)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  285 (391)
                      .+.-+...........+++.|+.+.+|+|+..+|.+..+.-+...+..++.|+++||.+.|.-+    ||..+..+.+..
T Consensus        15 g~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Gr----rrp~il~~~~~~   90 (444)
T PRK09669         15 GLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQ----FRPYLLWFAIPF   90 (444)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCC----cchhHHHHHHHH
Confidence            3444455556677788999999999999999999999999999999999999999995432000    344454554444


Q ss_pred             HHHHHHhhcCCc------hhHHHHHHHHHHHhhhhcccchhhhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHhhHhh
Q 016338          286 GVSLLCLNYAKS------PAVAAVLITIALSLSSFSQAGYLLNIQEIAP--DCAGFLHGIANSAGTLAAIISTIGTGYFV  357 (391)
Q Consensus       286 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~~~~~g~l~  357 (391)
                      ++...+....++      ..+..+..++.............+...|..+  ++|.+..+.......+|+.+++.+...+.
T Consensus        91 ~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~  170 (444)
T PRK09669         91 GVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLV  170 (444)
T ss_pred             HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444433322221      1222222222233334455556677777654  78999889888888888888887666555


Q ss_pred             cccc------chhHHHHHHHHHHHHHHHHHH
Q 016338          358 QWLG------SFQAFLTVTAGLYFVTTIFWN  382 (391)
Q Consensus       358 ~~~g------~~~~~~~~~~~~~~~~~~~~~  382 (391)
                      +..+      +|...+.+.+++..+..+...
T Consensus       171 ~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~  201 (444)
T PRK09669        171 DILGKGDEQKGYFYAMMVMGLLGVVLFFCCF  201 (444)
T ss_pred             HHhCCCchhhhHHHHHHHHHHHHHHHHHHHh
Confidence            4332      144455555555544444333

>PRK11462 putative transporter; Provisional

Probab=98.81  E-value=2.1e-07  Score=87.24  Aligned_cols=174  Identities=16%  Similarity=0.103  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHhH
Q 016338          205 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA-GYSLTLVRKIMQSIGFI  283 (391)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~-~~~~~~~~~~~~~~~~~  283 (391)
                      ..+.-+..+..+.....|+..|+.+..|+++..+|.+..+.-+..++.-++.|+++||...| +.     ||..+..+.+
T Consensus        14 Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr-----~rp~il~g~i   88 (460)
T PRK11462         14 YGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGK-----FRPWVLFGAL   88 (460)
T ss_pred             hccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCC-----cchhHhHHHH
Confidence            33444455666777788999999999999999999999999999999999999999986433 11     4455555655


Q ss_pred             hhHHHHHHhhcCCc------hhHHHHHHHHHHHhhhhcccchhhhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHhhH
Q 016338          284 GPGVSLLCLNYAKS------PAVAAVLITIALSLSSFSQAGYLLNIQEIAP--DCAGFLHGIANSAGTLAAIISTIGTGY  355 (391)
Q Consensus       284 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~~~~~g~  355 (391)
                      ..++...++...++      ..+..+..++......+......+...|..+  ++|++..+.-.....+|..+++.+...
T Consensus        89 ~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~p  168 (460)
T PRK11462         89 PFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMP  168 (460)
T ss_pred             HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555554443321      1222333333444555666677778888666  799999999999999998888887766


Q ss_pred             hhcccc------chhHHHHHHHHHHHHHHHHHHH
Q 016338          356 FVQWLG------SFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       356 l~~~~g------~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      +.+..|      +|.....+.+++.+++..+...
T Consensus       169 lv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~  202 (460)
T PRK11462        169 LVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF  202 (460)
T ss_pred             HHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            655443      1444444455544444444333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.78  E-value=1.9e-07  Score=88.16  Aligned_cols=170  Identities=16%  Similarity=0.127  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHH----HhhccchhHHHHHHHHH
Q 016338          205 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL----IKAGYSLTLVRKIMQSI  280 (391)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----~~~~~~~~~~~~~~~~~  280 (391)
                      ..+.-+..+........|++.|+.+..|+++..+|.+..+.-+..++..++.|+++||.    |||        |..+..
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grr--------rp~il~   82 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKF--------KPWILI   82 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCc--------chhHhh
Confidence            44555566777788889999999999999999999999999999999999999999965    653        455555


Q ss_pred             HhHhhHHHHHHhhcCCc---h---hHHHHHHHHHHHhhhhcccchhhhhhhccc--cchhHHHHHHHHHHHHHHHHHHHH
Q 016338          281 GFIGPGVSLLCLNYAKS---P---AVAAVLITIALSLSSFSQAGYLLNIQEIAP--DCAGFLHGIANSAGTLAAIISTIG  352 (391)
Q Consensus       281 ~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~~~~  352 (391)
                      +.+..++...++...++   .   .+..+..++.............+...|..+  ++|.+..+......++|+.+.+.+
T Consensus        83 g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~  162 (473)
T PRK10429         83 GTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF  162 (473)
T ss_pred             hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666544433221   1   122222233334445556667777788663  789999998777778877777666


Q ss_pred             hhHhhcccc------chhHHHHHHHHHHHHHHHHHH
Q 016338          353 TGYFVQWLG------SFQAFLTVTAGLYFVTTIFWN  382 (391)
Q Consensus       353 ~g~l~~~~g------~~~~~~~~~~~~~~~~~~~~~  382 (391)
                      ...+.+..|      .+.....+.+++.+++.+...
T Consensus       163 ~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~  198 (473)
T PRK10429        163 TLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL  198 (473)
T ss_pred             HHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            554433222      134444444444444444333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.76  E-value=1.3e-06  Score=77.04  Aligned_cols=165  Identities=18%  Similarity=0.073  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHH
Q 016338          212 NNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLC  291 (391)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (391)
                      .+......+.-+.+.+++.++.+..+++++......+.....+..+++.+|++         +|.-+..++.+++++..+
T Consensus        24 l~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~g---------yk~gi~lgL~l~avg~~l   94 (422)
T COG0738          24 LWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLG---------YKAGIVLGLLLYAVGAAL   94 (422)
T ss_pred             HHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhh---------hHHHHHHHHHHHHHHHHH
Confidence            33333444455556777779999999999999999999999999999999999         556677888888888887


Q ss_pred             hhcC---CchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcc--------
Q 016338          292 LNYA---KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW--------  359 (391)
Q Consensus       292 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~--------  359 (391)
                      +...   .+........++.....+........++....| +....-+.+.+.+..+|+.++|.+.+.+.++        
T Consensus        95 F~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~  174 (422)
T COG0738          95 FWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSA  174 (422)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCH
Confidence            7533   344444444455555556666677777777777 6778889999999999999999999998873        


Q ss_pred             ----------ccchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          360 ----------LGSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       360 ----------~g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                                .+..+.++...+...++..+.....+
T Consensus       175 ~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k  210 (422)
T COG0738         175 AQILAIKGADASSVQFPYLILAGLLVLLAVLILLSK  210 (422)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence                      23466677777777666666655554

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.74  E-value=3.6e-06  Score=73.37  Aligned_cols=338  Identities=12%  Similarity=0.034  Sum_probs=188.2

Q ss_pred             chhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhh-----hcCchHHHHH-HHHHHHHHHhhhhhh---------h
Q 016338            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVD-----KYGGKKVLAW-GVALWSLSTLLTPWA---------A   68 (391)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~~~~~~~~~~~~a---------~   68 (391)
                      .+|.+.+.=|.|.++.+...-.+. . ..--+.+.++.|     |+||||.-++ +..+.+....+.+.-         -
T Consensus        52 ~iP~lL~ak~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~  129 (510)
T KOG3574|consen   52 AIPLLLQAKGVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGG  129 (510)
T ss_pred             hhHHHhcCCCcchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCC
Confidence            467777777788777765443332 1 234678999999     9999974332 222222222222111         1


Q ss_pred             ccchHHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh-------hcCch---
Q 016338           69 THSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGIS---  138 (391)
Q Consensus        69 ~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~-------~~gwr---  138 (391)
                      .++...+...-++.-+..+....+.-...-.+..+++.|-+......+.+.|.+++..+.-.+.+       ..+|.   
T Consensus       130 ~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~  209 (510)
T KOG3574|consen  130 LPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQ  209 (510)
T ss_pred             CcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCcc
Confidence            23444444455666677777777777777778888888888888777778777777654322221       01222   


Q ss_pred             ------hHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHH
Q 016338          139 ------GPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITN  212 (391)
Q Consensus       139 ------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (391)
                            .-.+..+.+..+...+..+..+|.+++..   +++..         ..++..+-++++++-|.....+......
T Consensus       210 g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~---~e~~~---------~i~~~yk~l~~vLklk~v~~la~i~lt~  277 (510)
T KOG3574|consen  210 GFITLAGYLWFWGALFIVATTLVALLKKENDESVD---EELEL---------GIHESYKLLRDVLKLKSVRWLAGILLTG  277 (510)
T ss_pred             ceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhh---hhhhc---------CHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence                  12333344444444444444444333211   11110         1111223567888889998888888888


Q ss_pred             HHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHhHhhHHHHHH
Q 016338          213 NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA-GYSLTLVRKIMQSIGFIGPGVSLLC  291 (391)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  291 (391)
                      -.++.+-....+.-+.| .|.+.++.+++..+    ....++..++...|+-.+ ++..+..|....-+........+..
T Consensus       278 K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~----~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~  352 (510)
T KOG3574|consen  278 KLGFQAADALTSLKLLE-HGVPKEELALIAVP----LVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVW  352 (510)
T ss_pred             HHHhhhhhhccchHHHH-cCCChhHheeeeee----hhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHh
Confidence            88999988899988888 79999887776533    445555555555555432 1111222222211222111111111


Q ss_pred             -hh-cCC----chhHHHHHHH----HHHHhhhhcccchhhhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHhhHhhccc
Q 016338          292 -LN-YAK----SPAVAAVLIT----IALSLSSFSQAGYLLNIQEI-APDCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  360 (391)
Q Consensus       292 -~~-~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~  360 (391)
                       .. ...    -+....++.+    +...+....+...++..+++ .|...|+.+.+.|+..++|+--=..+..++.|..
T Consensus       353 ~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l  432 (510)
T KOG3574|consen  353 WTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL  432 (510)
T ss_pred             hhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence             11 111    0111122222    22222222223333344444 4578999999999999999988888888888864

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.71  E-value=5.1e-08  Score=84.42  Aligned_cols=131  Identities=21%  Similarity=0.303  Sum_probs=98.8

Q ss_pred             HHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchH--HHHHHHHHHHhhhhchhhhHHHHhhhhcCcc
Q 016338           27 LWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTA--SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSH  104 (391)
Q Consensus        27 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  104 (391)
                      ++.-.-|.++.+.+.||+|||+++....+++++..++.-....+|..  ++..+|++.    ++.+.+.+.|..|.+|.+
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPTa  466 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPTA  466 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccchh
Confidence            44556788999999999999999999999999999887444444433  234456554    344567789999999999


Q ss_pred             chhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCC
Q 016338          105 ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDP  163 (391)
Q Consensus       105 ~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  163 (391)
                      -|+...|..+.+..+|.++.|.++  +....+-..+..+.+...++..+...+++-|+.
T Consensus       467 vRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  467 VRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             hhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence            999999999999999999999998  333344455666667777766666665554543

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.69  E-value=7.8e-08  Score=65.50  Aligned_cols=73  Identities=23%  Similarity=0.219  Sum_probs=66.1

Q ss_pred             CccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHH
Q 016338            1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASL   75 (391)
Q Consensus         1 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~   75 (391)
                      ++|.+|.+++|.++|.++.|++.+.+.+||.+|++...++.++..+|+.+..+.+...+..+.+++.  ++++.+
T Consensus        11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~--~~~~~w   83 (85)
T PF06779_consen   11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT--HSFWLW   83 (85)
T ss_pred             HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hchHHH
Confidence            3689999999999999999999999999999999999999999888999999999999999999544  666544

Note that many members are hypothetical proteins.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.68  E-value=1.1e-07  Score=88.69  Aligned_cols=171  Identities=19%  Similarity=0.172  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHH----HHHhhccchhHHHHHHHHHHhHh
Q 016338          209 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASD----SLIKAGYSLTLVRKIMQSIGFIG  284 (391)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~~~~~~~~~~~~~~~~~~~~~~  284 (391)
                      .+...........+++.|+.+..|.++...+.+.....+..++..++.|.++|    |+||        ||..+..+...
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Gr--------rrp~~l~g~i~   81 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGR--------RRPWILIGAIL   81 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccc--------cceEeehhhHH
Confidence            34555666667789999999999999999999999999999999999999999    5665        44555667667


Q ss_pred             hHHHHHHhhcC-C---ch----hHHHHHHHHHHHhhhhcccchhhhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHhh
Q 016338          285 PGVSLLCLNYA-K---SP----AVAAVLITIALSLSSFSQAGYLLNIQEIAP--DCAGFLHGIANSAGTLAAIISTIGTG  354 (391)
Q Consensus       285 ~~~~~~~~~~~-~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~~~~~g  354 (391)
                      .++...++... +   +.    .+..+..++.............+...|..+  ++|.+..+..+....+|..+...+.+
T Consensus        82 ~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~  161 (428)
T PF13347_consen   82 LALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAP  161 (428)
T ss_pred             HHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            77666666544 2   11    122333333344455566667778888776  68999999999999999888888888


Q ss_pred             Hhhcccc------chhHHHHHHHHHHHHHHHHHHHhccC
Q 016338          355 YFVQWLG------SFQAFLTVTAGLYFVTTIFWNLYSTG  387 (391)
Q Consensus       355 ~l~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (391)
                      .+.+..|      +|.....+.+++..++.+......|+
T Consensus       162 ~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  162 ILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            7776554      36667777777777766666655555

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.65  E-value=8.1e-07  Score=81.10  Aligned_cols=125  Identities=18%  Similarity=0.197  Sum_probs=104.8

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhh
Q 016338           13 GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPA   92 (391)
Q Consensus        13 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~   92 (391)
                      |.++.+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++.-+...++.+..++..++.++|.+...+.
T Consensus       268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l  347 (467)
T COG2211         268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL  347 (467)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence            44556677788888888888899999999999999999999999999999886655568889999999999999999999


Q ss_pred             HHHHhhhhcCc-------cchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCc
Q 016338           93 MSTLTSRWFPS-------HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGI  137 (391)
Q Consensus        93 ~~~~i~~~~~~-------~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gw  137 (391)
                      ..++++|..+-       ++-|...+......=+|..++..+.++..+..|+
T Consensus       348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999887652       3347778888888889999999888888776653

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.65  E-value=5e-07  Score=83.87  Aligned_cols=150  Identities=13%  Similarity=0.077  Sum_probs=118.7

Q ss_pred             hhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC--chhHHHHHHH
Q 016338          229 TVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLIT  306 (391)
Q Consensus       229 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  306 (391)
                      +++++++++-+++.+....+.+++.+..|++.||+|.|         .++..+.++.++..++.+...  +.+..+++=+
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r---------~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~  136 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGAR---------RVFFISGLISALLTLLTPLAASIGFYLLLVLRF  136 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCch---------HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence            35788899999999999999999999999999999954         555566666666666655433  2233444445


Q ss_pred             HHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcc-ccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          307 IALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW-LGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      +.+...+...+.......+=.| ++|++..++.....++|.+++-++.|.+.+. .| |+..|++.+.+.++..+++..+
T Consensus       137 lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  137 LQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHH
Confidence            5555566677777777777555 9999999999999999999999999999998 77 9999999999999888888776


Q ss_pred             ccCc
Q 016338          385 STGE  388 (391)
Q Consensus       385 ~~~~  388 (391)
                      .+++
T Consensus       216 ~~d~  219 (466)
T KOG2532|consen  216 YSDS  219 (466)
T ss_pred             hcCC
Confidence            5543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.56  E-value=0.0004  Score=64.86  Aligned_cols=247  Identities=9%  Similarity=-0.004  Sum_probs=143.9

Q ss_pred             ChhhHHHHHHHHHH-HHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhh-------ccc---------------
Q 016338           15 SSSFLGIVQSSFLW-GYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA-------THS---------------   71 (391)
Q Consensus        15 s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~-------~~~---------------   71 (391)
                      +++.+..+-....+ ...+......+++||++|++++-+....+.....+.++..       .++               
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            44556666665555 4456678899999999999988877776666666654431       111               


Q ss_pred             -------hHHHHHHHHHHHhhhhchhh-hHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh---------h
Q 016338           72 -------TASLLAVRAFFGLAEGVAMP-AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS---------T  134 (391)
Q Consensus        72 -------~~~~~~~r~l~G~g~~~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~---------~  134 (391)
                             .|.+.+.-+..-+-...... .-..+.+|.++.+|-.|..++...+.++|.+++..+...+.+         .
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~  215 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV  215 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence                   12333333333333333333 347788999999999999999999999999999998888877         1


Q ss_pred             cCchhHHHHH----HHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHH
Q 016338          135 IGISGPFILF----SSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANI  210 (391)
Q Consensus       135 ~gwr~~f~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (391)
                      -.|...+...    .+.+.+.... .....+...+++...    +...++++.+++.....+.+.++|+|.+..+++...
T Consensus       216 ~~~~~~l~~l~~~v~~~g~~i~~~-~~~~~~~vl~~~~~~----~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi  290 (491)
T PF03219_consen  216 DAWELSLNSLMGIVLILGIVIILL-YRYMNKNVLTDPRFY----PSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVI  290 (491)
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHccCccccc----hhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHH
Confidence            2354333221    1122222222 222222211111100    000111111122223346677888998888888888


Q ss_pred             HHHHHHHHHHHhhHHHHHhhhCCCcchh---hHHhhhHHHHHHHHHHHHHHHHHHHHhh
Q 016338          211 TNNWGYFVLLSWMPIYFNTVFNVNLKQA---AWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (391)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~~~~  266 (391)
                      ++......+....-..+++.+.-+.+-.   |......++...+..++++.+.+|+|-+
T Consensus       291 ~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  291 AYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            8777777776665566666443222222   3344555666666667888888888743

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.55  E-value=2.2e-06  Score=66.69  Aligned_cols=108  Identities=15%  Similarity=0.188  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHHHHhhhh
Q 016338           21 IVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRW  100 (391)
Q Consensus        21 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~  100 (391)
                      .-.++......+++++.+.+.+++|.|+.++++.+.+.+-....   +-++.+.++.+-.+.|++.+..+...-.++.+.
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~---~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF---FYPNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            34455666677888889999999999999999999988665544   237889999999999999999999999999999


Q ss_pred             cCccchhhHHHHHHhhhhhhHHHHhhHHHHH
Q 016338          101 FPSHERASAIGICMGGFHLGNVVGLLLTPIM  131 (391)
Q Consensus       101 ~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l  131 (391)
                      .++++|++..++.......+.++|.++.-.+
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988888776554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.53  E-value=6e-06  Score=78.80  Aligned_cols=136  Identities=15%  Similarity=0.042  Sum_probs=108.6

Q ss_pred             hhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcc
Q 016338          237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQ  316 (391)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (391)
                      +.+++.+...++..++.++.|+++|++|         ||..+.++.+...++.++....++.....+.=++.+...+...
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~G---------Rk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~  160 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIG---------RKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGAS  160 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhh
Confidence            3478999999999999999999999999         5577778888888888888888888777777666666666677


Q ss_pred             cchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccc--cchhHHHHHHHHHHHHHHHHHHH
Q 016338          317 AGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL--GSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       317 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      .....+..|..| +.||...+..+....+|..++ .+.+...++.  + |+..+.+..+..++-.+...+
T Consensus       161 ~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~-Wr~~~~~~~i~~~~~~~~~~~  228 (513)
T KOG0254|consen  161 VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAG-WRIPLGLALIPAVILALGMLF  228 (513)
T ss_pred             hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCcc-HHHHHHHHHHHHHHHHHHHHh
Confidence            778888999988 799999999999998887777 6666655543  4 887777777777777666333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.50  E-value=5.5e-06  Score=69.92  Aligned_cols=160  Identities=16%  Similarity=0.031  Sum_probs=101.6

Q ss_pred             HHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc
Q 016338          215 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  294 (391)
Q Consensus       215 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (391)
                      ..+.+..|-|. +++.+|+|.++...+.....++..+ .++.|.+.||.|.         +..+.++.+....+...+..
T Consensus        17 t~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp---------~~~l~iG~~~~~~GY~~~~l   85 (250)
T PF06813_consen   17 TTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGP---------WVVLLIGAVLGFVGYGLLWL   85 (250)
T ss_pred             cccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcch---------HHHHHHHHHHHHHHHHHHHH
Confidence            44455555554 4556999999999999988888876 4889999999994         46666676666666655543


Q ss_pred             C-----C--chhHHHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHH
Q 016338          295 A-----K--SPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFL  367 (391)
Q Consensus       295 ~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~  367 (391)
                      .     +  +.+......+++................+.+|++||++.|+.-....+++.+-..+...+.+... ....+
T Consensus        86 ~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~-~~fll  164 (250)
T PF06813_consen   86 AVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP-SSFLL  164 (250)
T ss_pred             HHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCCh-HHHHH
Confidence            1     1  22333333333333333333444444446678999999999999999999998888887776521 22333


Q ss_pred             HHHHHHHHHHHHHHHHhcc
Q 016338          368 TVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~  386 (391)
                      .......+++.+...+.+.
T Consensus       165 ~la~~~~~v~l~~~~~vr~  183 (250)
T PF06813_consen  165 FLAVLPAVVCLVAMFFVRP  183 (250)
T ss_pred             HHHHHHHHHHHHHhhheec
Confidence            3333334444444444443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.46  E-value=0.00014  Score=66.26  Aligned_cols=349  Identities=13%  Similarity=0.042  Sum_probs=176.6

Q ss_pred             chhhHHHH--hCCChhhHHHHHHHHHHHHHHHHHhhhhhhh-----hcCchHHHHH-HHHHHHHHHhhhhhhhc------
Q 016338            4 AVVPLAAK--FGWSSSFLGIVQSSFLWGYIFSSVIGGALVD-----KYGGKKVLAW-GVALWSLSTLLTPWAAT------   69 (391)
Q Consensus         4 ~~~~i~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~~~~~~~~~~~~a~~------   69 (391)
                      .+|.+.++  -+.|.+|.+...-+ ...+. .-++|.++.|     |+||||.-++ ...+.++..+..+...+      
T Consensus        22 siPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~   99 (544)
T PF13000_consen   22 SIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFD   99 (544)
T ss_pred             cchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHhccchhhccc
Confidence            45777776  57788877654321 11111 2456666665     8999985443 23333333333322210      


Q ss_pred             --------------cch--HHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh
Q 016338           70 --------------HST--ASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS  133 (391)
Q Consensus        70 --------------~~~--~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~  133 (391)
                                    ++.  ..+...-++.=+-.+....+.-...-....+++++.+......+.+.|..++..+--.+-+
T Consensus       100 ~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns  179 (544)
T PF13000_consen  100 GVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNS  179 (544)
T ss_pred             ccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCC
Confidence                          011  1222223233333444445555555556677888888877777777777776655433321


Q ss_pred             -----h--------cC---chhHHHHHHHHHHHHHHHHhhccccCCCCCCCCChh-----HH--HHHHcCCCccc--ccC
Q 016338          134 -----T--------IG---ISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKS-----EL--RLIQAGKSDSV--KKR  188 (391)
Q Consensus       134 -----~--------~g---wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~--~~~  188 (391)
                           .        .|   -..-..+.+.+-++..+...++.+|+|..+...+.+     +.  +..+.+.++++  .++
T Consensus       180 ~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (544)
T PF13000_consen  180 PDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDGKSKEISIEYDESDVISTE  259 (544)
T ss_pred             HHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccccccccccccceecccccccchh
Confidence                 0        01   011123345555555556666677765433211100     00  00000000100  001


Q ss_pred             C-------CccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHH
Q 016338          189 N-------PPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASD  261 (391)
Q Consensus       189 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  261 (391)
                      +       -+.+.+++|-|.+..+.+.....-.++.........-+.| .|++.++.+.+..+    ....+++.|+++.
T Consensus       260 ~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~li----~~P~qii~~~~~~  334 (544)
T PF13000_consen  260 EILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVLI----DFPFQIILPYYIG  334 (544)
T ss_pred             hhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHHH----hhhHHHHHHHHhh
Confidence            1       1233566778999888888888888888777777777888 79999887766533    5666677777777


Q ss_pred             HHHhhccch-------hH-------HH--------HHHHHHHhH---hh-HHHHHHhhcCC----chhHHHHHH----HH
Q 016338          262 SLIKAGYSL-------TL-------VR--------KIMQSIGFI---GP-GVSLLCLNYAK----SPAVAAVLI----TI  307 (391)
Q Consensus       262 r~~~~~~~~-------~~-------~~--------~~~~~~~~~---~~-~~~~~~~~~~~----~~~~~~~~~----~~  307 (391)
                      |+-+.+.+.       +.       .|        ......++.   .. .+........+    .+.......    ++
T Consensus       335 Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l  414 (544)
T PF13000_consen  335 KWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVL  414 (544)
T ss_pred             hhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHH
Confidence            764332210       00       00        000111111   11 11111111111    112222222    22


Q ss_pred             HHHhhhhcccchhhhhhh-ccccchhHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 016338          308 ALSLSSFSQAGYLLNIQE-IAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW  359 (391)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~  359 (391)
                      ..+.....+....+.-.. ..|..-|+.+.+.|+..++|+---..+.=++.|.
T Consensus       415 ~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  415 SSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            223333333334444334 4568889999999999999987766666566654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.44  E-value=2.6e-06  Score=79.43  Aligned_cols=146  Identities=13%  Similarity=0.046  Sum_probs=111.4

Q ss_pred             hhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHH
Q 016338          229 TVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIA  308 (391)
Q Consensus       229 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (391)
                      ++.++...+.+.+.+.+.++.+++.+.++.+.||++-        .+.+. ...+.-.+..++-...++.+...+.-++.
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~l--------s~~l~-~~~~~w~~~~~~~~~~~s~~~~ialr~ll  144 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPL--------SKGLS-VSGILWGLFGFLTAAVHSFPGLIALRFLL  144 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCCh--------HHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4467778889999999999999999999999999983        22222 22222222222222356677777777778


Q ss_pred             HHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhc------cccchhHHHHHHHHHHHHHHHHH
Q 016338          309 LSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ------WLGSFQAFLTVTAGLYFVTTIFW  381 (391)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~  381 (391)
                      +.+.+..+|....++...+. ++|+.-+|+.++..++|+++|+.+...+.+      ..| |++.|++-+++.+...+..
T Consensus       145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g-W~~~FiI~G~i~~~~gi~~  223 (495)
T KOG2533|consen  145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG-WRWLFIIEGVITLVLGIVV  223 (495)
T ss_pred             HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC-ceeehhHHHHHHHHHHheE
Confidence            88888888988888888777 899999999999999999999999998643      344 9999999998877777655


Q ss_pred             HHh
Q 016338          382 NLY  384 (391)
Q Consensus       382 ~~~  384 (391)
                      ++.
T Consensus       224 f~~  226 (495)
T KOG2533|consen  224 FFF  226 (495)
T ss_pred             EEE
Confidence            443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.42  E-value=1.8e-05  Score=70.48  Aligned_cols=148  Identities=18%  Similarity=0.145  Sum_probs=124.4

Q ss_pred             HHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhh-hcCchHHHHHHHHHHHHHHhhhhhh-hccchHHHHHHHHHHHhhh
Q 016338            9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVD-KYGGKKVLAWGVALWSLSTLLTPWA-ATHSTASLLAVRAFFGLAE   86 (391)
Q Consensus         9 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~r~l~G~g~   86 (391)
                      .+-||.|..|...+++.+..|..++....|.+.. |.++|+.-.+++....++..+..++ ...+.+.+...-++.|++.
T Consensus       236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~  315 (403)
T PF03209_consen  236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN  315 (403)
T ss_pred             hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence            4558999999999999999999999999999888 6788888888988888777664332 3467889999999999999


Q ss_pred             hchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh----------cCchhHHHHHHHHHHHHHHHHh
Q 016338           87 GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST----------IGISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~----------~gwr~~f~~~~~~~~~~~~~~~  156 (391)
                      |.......+...|..++++.|..+|.+.....++..++..+++.+.|.          .++-.+|.+.++..++...+..
T Consensus       316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987662          2466677777777666555444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.34  E-value=7.3e-06  Score=78.52  Aligned_cols=140  Identities=11%  Similarity=0.045  Sum_probs=115.1

Q ss_pred             hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHH
Q 016338          231 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALS  310 (391)
Q Consensus       231 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (391)
                      ...+.....+..++..++..+|.++.|.++||+|         ||.++..+.+...++.+.....++.....+.=++.+.
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~G---------Rk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFG---------RKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF  183 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcc---------cHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            4556677788888999999999999999999999         5677788888888888888888898888888777777


Q ss_pred             hhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 016338          311 LSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      +..........+..|..+ ++|+.+..+ ......++.+++...+++..   +|++.++..........+.+++
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l  253 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFL  253 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHc
Confidence            766666777777777655 999999999 88888999999999999887   3888888888777777666433

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.33  E-value=0.00014  Score=69.32  Aligned_cols=154  Identities=16%  Similarity=0.089  Sum_probs=121.7

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhc-CchHHHHHHHHHHHHHHhhhhhhh-----cc------
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWAA-----TH------   70 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~a~-----~~------   70 (391)
                      .++..+.+++|.+...+.-..+.+.-......+..+.++|-| ||-+++.++.++...|..+..+..     .+      
T Consensus        59 nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~  138 (571)
T KOG1237|consen   59 NLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFK  138 (571)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Confidence            345667888898888888899999999999999999999976 999999999999988865543221     00      


Q ss_pred             ---------c---hHHHHHHHHHHHhhhhchhhhHHHHhhhhcC---cc-c--hhhHHHHHHhhhhhhHHHHhhHHHHHH
Q 016338           71 ---------S---TASLLAVRAFFGLAEGVAMPAMSTLTSRWFP---SH-E--RASAIGICMGGFHLGNVVGLLLTPIML  132 (391)
Q Consensus        71 ---------~---~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~---~~-~--rg~~~~~~~~~~~lg~~~g~~~~~~l~  132 (391)
                               +   ...+..+.-+..+|.|..-|...+.-+|-++   ++ +  +...++++....+.|..++..+..+.-
T Consensus       139 ~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq  218 (571)
T KOG1237|consen  139 PGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ  218 (571)
T ss_pred             CCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence                     1   1356667777888999999999999999998   22 2  237789999999999999998888887


Q ss_pred             hhcCchhHHHHHHHHHHHHHHHHh
Q 016338          133 STIGISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus       133 ~~~gwr~~f~~~~~~~~~~~~~~~  156 (391)
                      ++.+|.+.|.+..+...+..++.+
T Consensus       219 ~~~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  219 DNVGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             hcccceeeccHHHHHHHHHHHHHH
Confidence            889999999888777666555443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.31  E-value=1.3e-05  Score=73.29  Aligned_cols=111  Identities=19%  Similarity=0.208  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccc-------hHHHHHHHHHHHhhhhchhhhHHHHhhhhcCcc---chhhHHHHHHhhh
Q 016338           48 KVLAWGVALWSLSTLLTPWAATHS-------TASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSH---ERASAIGICMGGF  117 (391)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~a~~~~-------~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~---~rg~~~~~~~~~~  117 (391)
                      |++.++.++..+|.++..++..++       .+.++++-.+.++|.|..-|...++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            678889999999998854443232       257889999999999999999999999999765   4778899999999


Q ss_pred             hhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhc
Q 016338          118 HLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus       118 ~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      ++|..++..+.+++-++.||.+.|.+.++..++..+..+.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999888877766655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.26  E-value=1e-05  Score=54.74  Aligned_cols=62  Identities=15%  Similarity=0.093  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhh
Q 016338          204 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (391)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~  266 (391)
                      ..-..+++.+.+...+..++|.|+++ .|+|+.+.|.+.++..+...++.++.|.++||.+++
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            34566777888888899999999998 899999999999999999999999999999999975

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.21  E-value=5.2e-06  Score=56.23  Aligned_cols=55  Identities=24%  Similarity=0.303  Sum_probs=48.3

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALW   57 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~   57 (391)
                      |.+|...++.|.|+.|+|.+.++..+...++++++|.++||+++++.+.....+.
T Consensus        21 Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   21 PFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            4566677788999999999999999999999999999999999998877765543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.18  E-value=1.8e-08  Score=94.61  Aligned_cols=157  Identities=18%  Similarity=0.262  Sum_probs=106.6

Q ss_pred             hhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhh--h-hhccc-----hHHHHH
Q 016338            6 VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP--W-AATHS-----TASLLA   77 (391)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~-a~~~~-----~~~~~~   77 (391)
                      |.+.++.+.++.  -.......+...++.+....+.||+|||+.++.+..+.+++.+..+  . ...++     ......
T Consensus       277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  354 (451)
T PF00083_consen  277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVF  354 (451)
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence            445556666555  1222233344556677777999999999999999988888877764  1 11121     222222


Q ss_pred             HHHH-HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHh
Q 016338           78 VRAF-FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (391)
Q Consensus        78 ~r~l-~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  156 (391)
                      .... ...+. ...+....+..|.+|.+.|.++.++......++..+++.+...+.+..+-...+.+.+...++..+..+
T Consensus       355 ~~l~~~~~~~-g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~  433 (451)
T PF00083_consen  355 LALFFAFFSL-GWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVY  433 (451)
T ss_pred             eeeccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhee
Confidence            2211 12222 233666788899999999999999999999999999998888877766634566666777777777888


Q ss_pred             hccccCCCC
Q 016338          157 SKVTNDPCN  165 (391)
Q Consensus       157 ~~~~~~~~~  165 (391)
                      ++.||+..+
T Consensus       434 ~~lpET~g~  442 (451)
T PF00083_consen  434 FFLPETKGK  442 (451)
T ss_pred             EEEeeCCCC
Confidence            888987654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.12  E-value=0.00015  Score=70.45  Aligned_cols=164  Identities=12%  Similarity=-0.015  Sum_probs=112.1

Q ss_pred             HHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc
Q 016338          215 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  294 (391)
Q Consensus       215 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (391)
                      .++++...+..|+.+.+|++...+..+...+....-+..+++|++.|++-.+       + ..+..+.++..++..++..
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~-------~-~tIl~~~ii~~lG~~llai   73 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK-------F-KTILYLSIVYVVGHALLSF   73 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------H-HHHHHHHHHHHHHHHHHHh
Confidence            3456667777888888999999888888888888888899999999997543       3 3334444444444444433


Q ss_pred             CCc--------hhHHHHHHHHHHHhhhhcccchhhhhhhccc-c---chhHHHHHHHHHHHHHHHHHHHHhhHhhcccc-
Q 016338          295 AKS--------PAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D---CAGFLHGIANSAGTLAAIISTIGTGYFVQWLG-  361 (391)
Q Consensus       295 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-  361 (391)
                      ...        ....+..+.+..+..+..-+...+...+.++ +   .+-+...+.....++|+.+++.+.+++.+..+ 
T Consensus        74 ~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~  153 (654)
T TIGR00926        74 GAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC  153 (654)
T ss_pred             ccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            211        1123333444444455556666666666544 2   46778888999999999999999999985531 


Q ss_pred             -----chhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          362 -----SFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       362 -----~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                           +|...|.+.++..+++.+.+...++
T Consensus       154 fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k  183 (654)
T TIGR00926       154 FGCQDCYPLAFGVPAILMILALIVFMAGSK  183 (654)
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence                 3778888888888888877765443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.07  E-value=8.2e-06  Score=73.18  Aligned_cols=128  Identities=15%  Similarity=0.135  Sum_probs=97.8

Q ss_pred             HHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccc--------hHHHHHHHHHHHhhhhchhhhHHHHhhhhcCc
Q 016338           32 FSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS--------TASLLAVRAFFGLAEGVAMPAMSTLTSRWFPS  103 (391)
Q Consensus        32 ~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~--------~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~  103 (391)
                      .+-.+...+.|+.|||++.+-+.+++.+..+..+..  .|        ...+.+..++.-+|-.   .....+-+|.+|.
T Consensus       363 PGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~--y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FPa  437 (538)
T KOG0252|consen  363 PGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGP--YNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPA  437 (538)
T ss_pred             CceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCC--cccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchH
Confidence            355667788999999999999999999988887443  44        1122233333333322   3445566899999


Q ss_pred             cchhhHHHHHHhhhhhhHHHHhhHHHHHHh-----hcCchhHHHHHHHHHHHHHHHHhhccccCCCC
Q 016338          104 HERASAIGICMGGFHLGNVVGLLLTPIMLS-----TIGISGPFILFSSLGLLWLSTWTSKVTNDPCN  165 (391)
Q Consensus       104 ~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~-----~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~  165 (391)
                      +-|+..-|+.....-.|.++|...-..+.+     ..+.|+++++.+...++..+..+++ ||+..+
T Consensus       438 rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk~~  503 (538)
T KOG0252|consen  438 RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETKGK  503 (538)
T ss_pred             HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe-eccccc
Confidence            999999999999999999999999999988     7789999999999888877766554 565443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=98.00  E-value=0.00034  Score=58.48  Aligned_cols=101  Identities=18%  Similarity=0.138  Sum_probs=60.7

Q ss_pred             cchhhHHHHHHhhhhhhHHHHhhHHHHH---H--hhcCchhHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHH
Q 016338          104 HERASAIGICMGGFHLGNVVGLLLTPIM---L--STIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQ  178 (391)
Q Consensus       104 ~~rg~~~~~~~~~~~lg~~~g~~~~~~l---~--~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (391)
                      |+|+........+.++|.++.-..--.-   .  ..-+|++.+.+.+++.++-+++...+-.|-+...++ +++++    
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~k----   76 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQEK----   76 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-ccccc----
Confidence            6677777777788888887765442111   1  123599999999988877666666553332111111 01100    


Q ss_pred             cCCCcccccCCCccHHHhhcCCchHHHHHHHHHHH
Q 016338          179 AGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNN  213 (391)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (391)
                          ++.+.+++.+..+.+|++..|...+.+...-
T Consensus        77 ----~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   77 ----ENSTLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             ----ccccccccchHHHHHccchHHHHHHHHHHHh
Confidence                0112223467899999999998877666543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.00  E-value=0.0032  Score=55.56  Aligned_cols=151  Identities=14%  Similarity=0.082  Sum_probs=90.3

Q ss_pred             HHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHH
Q 016338          226 YFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLI  305 (391)
Q Consensus       226 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (391)
                      .+++ +|+++.+.+.++......+.+...+.|.+.||+|||        +..+. ..+...+..+. -..++...+++.=
T Consensus        60 LY~~-yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk--------~~cl~-~cily~~scl~-k~~~~~~~L~~GR  128 (354)
T PF05631_consen   60 LYES-YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK--------KACLL-FCILYSLSCLT-KHSSNYPVLLLGR  128 (354)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--------HHHHH-HHHHHHHHHHH-HhccccHHHHHHH
Confidence            3344 899999999999998899999999999999999964        23333 33333333332 2334455554444


Q ss_pred             HHHHHhhhhcccchhhh-hhhc-----cccchhHHHHHHHHH-HHHHHHHHHHHhhHhhccccc-hhHHHHHHHHHHHHH
Q 016338          306 TIALSLSSFSQAGYLLN-IQEI-----APDCAGFLHGIANSA-GTLAAIISTIGTGYFVQWLGS-FQAFLTVTAGLYFVT  377 (391)
Q Consensus       306 ~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~g~~~~~-~~~g~~i~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~  377 (391)
                      ++++..........-+. +.|.     +++..+...+..... ..+-.+.+..+.-.+.|..|. ...+|.....+.+++
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~  208 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA  208 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            44444444443332222 2222     224445555544422 333445555555566666552 477888888888888


Q ss_pred             HHHHHHhccC
Q 016338          378 TIFWNLYSTG  387 (391)
Q Consensus       378 ~~~~~~~~~~  387 (391)
                      .++.....++
T Consensus       209 ~~~I~~~W~E  218 (354)
T PF05631_consen  209 AVLILKTWPE  218 (354)
T ss_pred             HHHHHhcccc
Confidence            7776554444

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.94  E-value=0.016  Score=53.26  Aligned_cols=246  Identities=9%  Similarity=0.003  Sum_probs=147.9

Q ss_pred             ChhhHHHHHHHHHH-HHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhc-------cc---------------
Q 016338           15 SSSFLGIVQSSFLW-GYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT-------HS---------------   71 (391)
Q Consensus        15 s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~-------~~---------------   71 (391)
                      +++.+.++-+..-+ +..+..++.++++++..|++++-+.+..+....+++++..-       ++               
T Consensus        59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l  138 (509)
T COG3202          59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL  138 (509)
T ss_pred             cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence            45667888888888 77788999999999999999998888888888877765431       11               


Q ss_pred             --------hHHHHHHHHHHHhhhhchhh-hHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC------
Q 016338           72 --------TASLLAVRAFFGLAEGVAMP-AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG------  136 (391)
Q Consensus        72 --------~~~~~~~r~l~G~g~~~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g------  136 (391)
                              .|...+.-.+.-+=.+.... .-....+|....+|-.|..++.+.+.+++..++..+..++.++-.      
T Consensus       139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~  218 (509)
T COG3202         139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEF  218 (509)
T ss_pred             eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHH
Confidence                    13333333444333333322 345667899988999999999999999999999988888765221      


Q ss_pred             ----chhHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHH
Q 016338          137 ----ISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITN  212 (391)
Q Consensus       137 ----wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (391)
                          -+..+.+.+....+...+..+.-+...++++...+    ...+++.++.+-.-..+.+.+.|+|..+.+++...++
T Consensus       219 ~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~----~~~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y  294 (509)
T COG3202         219 KDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLR----AKKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAY  294 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHH----HhcccccccccCcHHHHHHHHHhhhHHHHHHHHHHHH
Confidence                23444555555455444444433332322221100    0001111111222334667788889888888888887


Q ss_pred             HHHHHHHHHhhHHHHHhhhCCCcchh---hHHhhhHHHH-HHHHHHHHHHHHHHHH
Q 016338          213 NWGYFVLLSWMPIYFNTVFNVNLKQA---AWFSAVPWGT-MAVSGYMAGKASDSLI  264 (391)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~-~~~~~~~~g~l~dr~~  264 (391)
                      +.+...+....-.-.++.+..+.+-.   +.+....++. ..+...+++.+.+|.|
T Consensus       295 ~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~G  350 (509)
T COG3202         295 GVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVG  350 (509)
T ss_pred             HHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence            77776666433333333333222222   2233334444 3344567777888777

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.90  E-value=0.0027  Score=58.86  Aligned_cols=52  Identities=19%  Similarity=0.171  Sum_probs=35.4

Q ss_pred             chHHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhH
Q 016338           71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLL  127 (391)
Q Consensus        71 ~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~  127 (391)
                      .++..++.-++.|++.+........+.+ .+|++    .++.+..+.+++++++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence            4666677788889998888777777666 56643    4555666666666666544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.85  E-value=0.00033  Score=65.13  Aligned_cols=159  Identities=21%  Similarity=0.227  Sum_probs=102.3

Q ss_pred             hhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC----c
Q 016338          222 WMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK----S  297 (391)
Q Consensus       222 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  297 (391)
                      -...|+++++|+++.+...+.....+.. ...++.|.++|.+.-.|++    ||..+.++.++.......+...+    +
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~r----r~~Y~~i~~~~~~~~~~~~~~~~~~~~s   85 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYR----RKPYMIIGWLLGAVSALVLALLPASESS   85 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCc----chHHHHHHHHHHHHHHHHHHhcccccch
Confidence            3445778889999998887766654444 4568999999998532222    66666666666644444443322    2


Q ss_pred             hhHHHHHHHHHHHhhhhcccchhhhhhhc---cccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHH
Q 016338          298 PAVAAVLITIALSLSSFSQAGYLLNIQEI---APDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLY  374 (391)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~  374 (391)
                      .....+..++.................|.   .|+.++...+.......+|+.++..+.|.+.+..+ ++..|.+.+.+.
T Consensus        86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~  164 (433)
T PF03092_consen   86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALP  164 (433)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHH
Confidence            22223333333333344444444444443   34448889999999999999999999999999877 777787777666


Q ss_pred             HHHHHHHHHhcc
Q 016338          375 FVTTIFWNLYST  386 (391)
Q Consensus       375 ~~~~~~~~~~~~  386 (391)
                      .+..+..+...+
T Consensus       165 ~l~~~~~~~~~~  176 (433)
T PF03092_consen  165 LLMLIVALFLLE  176 (433)
T ss_pred             HHHHHHHHHhhh
Confidence            666554444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.81  E-value=0.00074  Score=62.78  Aligned_cols=130  Identities=15%  Similarity=0.145  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhh
Q 016338          246 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQE  325 (391)
Q Consensus       246 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (391)
                      ++...+..+..|.++||+|||         ..+........+.........  ++..+ ..-..+..........+++.|
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk---------~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vad  139 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRK---------VVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVAD  139 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhh---------hhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheee
Confidence            567778889999999999954         454455544444444443322  22222 111222233445666777888


Q ss_pred             ccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          326 IAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       326 ~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      ... +.|....|+.+.....+..++|.+.+.+.+..| +...+.+..+..+++.+..+...+++
T Consensus       140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~-~a~~f~ia~~~~~~~~~y~~~~l~Es  202 (463)
T KOG2816|consen  140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG-IALVFLIAAASGILSLLYMLLFLPES  202 (463)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHhhccccc
Confidence            777 899999999999999999999999999999977 88899998888888888777665543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.77  E-value=0.00044  Score=63.74  Aligned_cols=179  Identities=12%  Similarity=0.020  Sum_probs=105.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHh-hhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 016338          202 SWTVIIANITNNWGYFVLLSWMPIYFNT-VFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  280 (391)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  280 (391)
                      .+...+..++.......+..-.-+|+++ +.+-+.+..|+..+...++.++..+..|+...|.+.-        |.-++.
T Consensus        36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~--------k~Pli~  107 (488)
T KOG2325|consen   36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSV--------KKPLIV  107 (488)
T ss_pred             HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCc--------ccCHHH
Confidence            3444444444444443333333456665 2456667789999999999999999999999998853        223344


Q ss_pred             HhHhhHHHHHHh---hcCCchhHHHHHH-HHHHHhhhhcccchhhhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHhhH
Q 016338          281 GFIGPGVSLLCL---NYAKSPAVAAVLI-TIALSLSSFSQAGYLLNIQEI-APDCAGFLHGIANSAGTLAAIISTIGTGY  355 (391)
Q Consensus       281 ~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~  355 (391)
                      +.+.+.++-++.   ...++....+.++ =+..+.+.......-.+..+. .+++|.++++..+....+|..+||.+...
T Consensus       108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA  187 (488)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence            555555554444   2333322222221 111122212223334455553 44888888888888777788888766554


Q ss_pred             hhc------------cccchhHHHHHHHHHHHHHHHHHHHhccCc
Q 016338          356 FVQ------------WLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  388 (391)
Q Consensus       356 l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (391)
                      +..            ++..|..+-++..+..++..+...+..++.
T Consensus       188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence            432            123477788888888888877776665543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.71  E-value=0.00091  Score=57.09  Aligned_cols=319  Identities=13%  Similarity=0.092  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHHHHhhh
Q 016338           20 GIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSR   99 (391)
Q Consensus        20 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~   99 (391)
                      |.+.-.--+...+..+....+.||+.--.=..+..++.+.+..+.  +++++.++-+.+-.+..++.|....+-..+-+ 
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lV--afs~s~~~sL~GV~~aSissGlGEiTFL~lss-  141 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLV--AFSNSVPMSLLGVVFASISSGLGEITFLALSS-  141 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEE--EeccchhHHHhhhhhhhhcCCcceeehhhhhc-
Confidence            444444445556667777788888754333444556667777777  55699999999999999998887665444433 


Q ss_pred             hcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh--hcCchhHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhHHHHH
Q 016338          100 WFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS--TIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLI  177 (391)
Q Consensus       100 ~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~--~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (391)
                      .+|+    ...+-++.+.+.+..+|..--..+.+  .+.-|.+.+++..+.++.+...++.+++++.......+++....
T Consensus       142 ~Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~~~  217 (409)
T KOG3880|consen  142 RYPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTEII  217 (409)
T ss_pred             cCCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCccceec
Confidence            3332    34556666666666776644444444  34578888888888888777777776665544321111110000


Q ss_pred             Hc---CCCccccc---CCCccHHHhhc-CCchHHHHHHHHHHHHHHHHHHHhhHHHHHh--hhCCCcc---hhhHHhhhH
Q 016338          178 QA---GKSDSVKK---RNPPSLRHLLS-KLPSWTVIIANITNNWGYFVLLSWMPIYFNT--VFNVNLK---QAAWFSAVP  245 (391)
Q Consensus       178 ~~---~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~---~~~~~~~~~  245 (391)
                      ++   ..+.++++   +.....++-++ -+......+-....++..+.++.-+...+.-  ..|.+..   |.-+....+
T Consensus       218 ~~~~~~~~a~e~~sv~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvlY  297 (409)
T KOG3880|consen  218 PSQYLPFEAAEEKSVPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVLY  297 (409)
T ss_pred             cCCCCcccccccccCchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhheee
Confidence            00   00001111   11122233222 1233334455555555555555433222111  1233322   233444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH---hHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccc-hhh
Q 016338          246 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG---FIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG-YLL  321 (391)
Q Consensus       246 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  321 (391)
                      .++-.+.+--.     |+-    ..+  ..+.+.+.   -++..+.-..+++.++.+...+..+.-+..++..+.. ...
T Consensus       298 QlGVFiSRSS~-----~~~----~~p--~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~  366 (409)
T KOG3880|consen  298 QLGVFISRSSI-----NLF----TMP--YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHN  366 (409)
T ss_pred             eeeEEEEeccc-----eEE----ech--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHH
Confidence            33332222110     000    000  01111111   1112222234456667777666666666665555444 445


Q ss_pred             hhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHh
Q 016338          322 NIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYF  356 (391)
Q Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l  356 (391)
                      +..|..|++|--+++.....-++|-.++..+.=.+
T Consensus       367 i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  367 IHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            55668889999999988877777776666554333

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.54  E-value=0.0022  Score=57.95  Aligned_cols=151  Identities=13%  Similarity=0.062  Sum_probs=89.5

Q ss_pred             HHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC-----chhH
Q 016338          226 YFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK-----SPAV  300 (391)
Q Consensus       226 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  300 (391)
                      +.++.+| +.+.+-+...++.+..+...+.+-|+.||+|-         |....++....+++..+=....     +...
T Consensus        70 ~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GL---------R~a~llgt~ln~iGa~Ir~iss~p~v~~~f~  139 (480)
T KOG2563|consen   70 YVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGL---------RTALLLGTVLNGIGAWIRLISSLPFVPPLFR  139 (480)
T ss_pred             HHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccch---------HHHHHHHHHHHHHHHHHhhhccCccccccch
Confidence            4455566 66667778888899999999999999999994         4555666666666655432221     2222


Q ss_pred             HHHHHHHHHHhhhhcccch----hhhhhh-ccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccc----c-chh--HHHH
Q 016338          301 AAVLITIALSLSSFSQAGY----LLNIQE-IAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWL----G-SFQ--AFLT  368 (391)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~----g-~~~--~~~~  368 (391)
                      . -+...+....+...+-.    .-.... ..|++|+.+..+..+...+|.+++..+...+..+.    + .+.  ..+.
T Consensus       140 ~-~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~  218 (480)
T KOG2563|consen  140 R-PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFL  218 (480)
T ss_pred             h-hhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHH
Confidence            1 12222222222222221    122222 45599999999999888899999888888776553    1 122  2344


Q ss_pred             HHHHHHHHHHHHHHHhccC
Q 016338          369 VTAGLYFVTTIFWNLYSTG  387 (391)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~  387 (391)
                      ...++..+-+.+..+.+++
T Consensus       219 ~~~~l~~l~l~l~~~~~~~  237 (480)
T KOG2563|consen  219 GVECLAALLLALVLFVFTK  237 (480)
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            3444444444444444444

>PRK03612 spermidine synthase; Provisional

Probab=97.51  E-value=0.011  Score=56.33  Aligned_cols=174  Identities=11%  Similarity=0.068  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhh
Q 016338          206 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP  285 (391)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  285 (391)
                      .+..++..++...+.......+...+|.+....+.+.+.+..+..+|..+++++.++..++.      ...-+.++.+..
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~------~~~e~~i~l~~~   93 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF------VAVELLLALLGG   93 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH------HHHHHHHHHHHH
Confidence            34444555555556666666666668888888888889888889899888887764433210      001111111111


Q ss_pred             HHHHHH---hhcCCch-hHHHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhc-cc
Q 016338          286 GVSLLC---LNYAKSP-AVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQ-WL  360 (391)
Q Consensus       286 ~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~  360 (391)
                      ....++   ....... .......+......+...|...-...+...++.+...|-......+|+.+|+.+.+++.- ..
T Consensus        94 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l  173 (521)
T PRK03612         94 LSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRL  173 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhc
Confidence            111111   1110001 111111222223333334433333333333346777888999999999999999998654 77


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          361 GSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       361 g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      |.....+.+..+..+++.+..+..+
T Consensus       174 G~~~t~~~~a~l~~~~a~~~~~~~~  198 (521)
T PRK03612        174 GLIRTAALTGSLNLLAALVFLWLFR  198 (521)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8444444444444444434433333

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.41  E-value=0.011  Score=53.55  Aligned_cols=161  Identities=11%  Similarity=-0.009  Sum_probs=110.0

Q ss_pred             HHHhhHHHHHhh-hCCCcchhhHHhhhH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC
Q 016338          219 LLSWMPIYFNTV-FNVNLKQAAWFSAVP-WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK  296 (391)
Q Consensus       219 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~-~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (391)
                      ...++..|+.+. .|++.++..--.-+. .-...+.-+....+.|.++         -|.+++++.+...+...++.+.+
T Consensus        22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~---------Ykpviil~~~~~i~t~~lll~~~   92 (412)
T PF01770_consen   22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLR---------YKPVIILQALSYIITWLLLLFGT   92 (412)
T ss_pred             CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHHHHHHHHHC
Confidence            446788888886 889888765443333 3355566678889999998         55777777777666666666666


Q ss_pred             chhHHHHHHHHHHHhhhhcccchhhhhhh-ccccchhHHHHHHHHHHHHHHHHHHHHhhHhhcc-ccchhHHHHHHHHHH
Q 016338          297 SPAVAAVLITIALSLSSFSQAGYLLNIQE-IAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW-LGSFQAFLTVTAGLY  374 (391)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~  374 (391)
                      +....-+.-++.+.... .-...++++-. ++|++.-++.+........|..++..++-.+.+. ..+|.....+.....
T Consensus        93 sv~~mq~~q~~yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~  171 (412)
T PF01770_consen   93 SVLAMQLMQFFYGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASV  171 (412)
T ss_pred             cHHHHHHHHHHHHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            66655555444443333 23444455443 4557888889999999888988888888777663 235777777777777


Q ss_pred             HHHHHHHHHhccCcc
Q 016338          375 FVTTIFWNLYSTGER  389 (391)
Q Consensus       375 ~~~~~~~~~~~~~~~  389 (391)
                      .++.+..+++++.+|
T Consensus       172 ~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  172 SLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHcCCCCc
Confidence            777777777776654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.28  E-value=0.02  Score=51.61  Aligned_cols=273  Identities=15%  Similarity=0.053  Sum_probs=111.7

Q ss_pred             chHHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHH---HHhhcC-chhHHHHHHH
Q 016338           71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI---MLSTIG-ISGPFILFSS  146 (391)
Q Consensus        71 ~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~---l~~~~g-wr~~f~~~~~  146 (391)
                      .+...++.-.+.+.+.+..........++ +|+|.-+-.    ..+.++++.+..++.-.   ..+... =-..|...+.
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqav----m~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~  190 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAV----MSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST  190 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHH----HhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence            35555666777788777766655555554 555543332    33444444444333211   111111 1123444444


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCChhHH--HHHHc-C-CCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHh
Q 016338          147 LGLLWLSTWTSKVTNDPCNSPFVSKSEL--RLIQA-G-KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSW  222 (391)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (391)
                      +..+..+..+...|+.|--+....++..  ...++ + +++.+.++...+.++++|+-     .--.+.....+......
T Consensus       191 ~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~k~-----~~~~~~i~lvy~VTLsi  265 (406)
T KOG1479|consen  191 VILLLCFVLYLVLPKLPFVRYYREKAGSIGSKLAAEGIESDSSLSNEDDSLWDIFKKI-----KDLAFNIFLVYFVTLSI  265 (406)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHhhhcccccccccccccccccccccccchHHHHHHHH-----HHHhhchheeeeeeeEe
Confidence            4444444444455555432111000000  00000 0 00111111112445555431     11112222333444456


Q ss_pred             hHHHHHhhhCCC---cchhhHHhhh-HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCch
Q 016338          223 MPIYFNTVFNVN---LKQAAWFSAV-PWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP  298 (391)
Q Consensus       223 ~~~~~~~~~g~~---~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (391)
                      +|-+..+..+-+   ..-.-+.... +.+...+|.+...++-++-. |........|...+..+..+-.-- .-...++.
T Consensus       266 FPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~-r~l~i~v~lR~lfiPlF~~cn~~~-~~v~~~~~  343 (406)
T KOG1479|consen  266 FPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDP-RKLTIPVLLRLLFIPLFLLCNYPP-LPVVFESD  343 (406)
T ss_pred             cchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCC-ceehHHHHHHHHHHHHHHHhccCC-CCceecCc
Confidence            777766643222   2223333444 66777777666666554432 211111111111111111000000 00112344


Q ss_pred             hHHHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhH
Q 016338          299 AVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGY  355 (391)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~  355 (391)
                      ++......+.+...+......+.+..+..|.+...+.|....+...++.....+.++
T Consensus       344 ~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  344 GWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             hHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            555555555556666666666677666555333344444444444444333333333

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.11  E-value=0.075  Score=41.53  Aligned_cols=107  Identities=13%  Similarity=0.058  Sum_probs=76.8

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchh
Q 016338          241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL  320 (391)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (391)
                      -.++......+..++.+.+.+++|         .|+.+.++.+...+....... ++.+.......+.+...+..+...-
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg---------~K~sm~lg~~~y~~y~~~~~~-~~~~~l~~~s~l~G~~~a~lW~aqg  111 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLG---------PKWSMILGSLGYAIYIASFFY-PNSYTLYPASALLGFGAALLWTAQG  111 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhhHHhhHhhh
Confidence            355666777888889999999999         456667777666655544433 4455555666666666677777776


Q ss_pred             hhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhh
Q 016338          321 LNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV  357 (391)
Q Consensus       321 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~  357 (391)
                      .++.+..+ +.+++-.++...+.+.+..+|..+.-.+.
T Consensus       112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777666 78899999999999888888877665554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.05  E-value=0.0062  Score=41.73  Aligned_cols=78  Identities=15%  Similarity=0.232  Sum_probs=61.1

Q ss_pred             HHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHh
Q 016338          213 NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  292 (391)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      ..+-+.+...+|...+| .++|..+++++.+...++..+|.+...++.++.+         ++..+..+.+...+.....
T Consensus         5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSR---------PRRLLRAGLLLTVLSTAAM   74 (85)
T ss_pred             hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHHHHHHHH
Confidence            34556777888877777 7999999999999999999999999999888754         3455567777777777777


Q ss_pred             hcCCchhH
Q 016338          293 NYAKSPAV  300 (391)
Q Consensus       293 ~~~~~~~~  300 (391)
                      ...++.+.
T Consensus        75 a~~~~~~~   82 (85)
T PF06779_consen   75 ALTHSFWL   82 (85)
T ss_pred             HHHhchHH
Confidence            76665544

Note that many members are hypothetical proteins.

>PRK03612 spermidine synthase; Provisional

Probab=96.92  E-value=0.033  Score=53.07  Aligned_cols=140  Identities=21%  Similarity=0.232  Sum_probs=84.8

Q ss_pred             HHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHH---Hhhhhhh--hccch-HHHHHHHHHHH
Q 016338           10 AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS---TLLTPWA--ATHST-ASLLAVRAFFG   83 (391)
Q Consensus        10 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~---~~~~~~a--~~~~~-~~~~~~r~l~G   83 (391)
                      .-+|-+..+.+.+.+++..|.++|+...+++.++--++ ...+-..+..++   ..+....  ....+ ..++..-++.+
T Consensus        43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  121 (521)
T PRK03612         43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIG  121 (521)
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888899999999999999999999887443222 222221111111   1111001  00111 12234445667


Q ss_pred             hhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHH-hhcCchhHHHHHHHHHHHH
Q 016338           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-STIGISGPFILFSSLGLLW  151 (391)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~-~~~gwr~~f~~~~~~~~~~  151 (391)
                      +..|...|....+..+.. .++-++..|-......+|.++|.++.+++. ..+|-....++.+.+.++.
T Consensus       122 ~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~  189 (521)
T PRK03612        122 LLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLA  189 (521)
T ss_pred             HHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            888888888777666543 234577888899999999999999887754 4566544444444444433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.83  E-value=0.14  Score=47.93  Aligned_cols=148  Identities=15%  Similarity=0.044  Sum_probs=82.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCC-----CcchhhHHhhhHHHHHHHH-HHHHHHHHHHHHhhccchhHHH
Q 016338          201 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNV-----NLKQAAWFSAVPWGTMAVS-GYMAGKASDSLIKAGYSLTLVR  274 (391)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~~~~~~~~~~~~  274 (391)
                      ++....+..++..+.++..     --++|....     +++....+.....+...+. .++.+++++|+++++...... 
T Consensus         8 k~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~-   81 (472)
T TIGR00769         8 KFLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI-   81 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH-
Confidence            4444455555444443322     335555555     3345666665555555555 788999999999763322111 


Q ss_pred             HHHHHHHhHhhHHHHHHhhcCCc--------------------------hhHHHHHHHHHHHhhhhccc-chhhhhhhcc
Q 016338          275 KIMQSIGFIGPGVSLLCLNYAKS--------------------------PAVAAVLITIALSLSSFSQA-GYLLNIQEIA  327 (391)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  327 (391)
                         ............++.+..+.                          .|......+..-.......+ ..+..++|..
T Consensus        82 ---~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~  158 (472)
T TIGR00769        82 ---SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQIT  158 (472)
T ss_pred             ---HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               01111111111121111111                          11111222222233333333 5677889988


Q ss_pred             c-cchhHHHHHHHHHHHHHHHHHHHHhhHhh
Q 016338          328 P-DCAGFLHGIANSAGTLAAIISTIGTGYFV  357 (391)
Q Consensus       328 ~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~  357 (391)
                      . ++..+-.++....+++|..+++.+..++.
T Consensus       159 t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       159 TIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8 88999999999999999999999998877

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.62  E-value=0.2  Score=43.67  Aligned_cols=136  Identities=16%  Similarity=0.127  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhHHHHHhhhCCCc--chhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHH
Q 016338          214 WGYFVLLSWMPIYFNTVFNVNL--KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLC  291 (391)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (391)
                      ..........+.+..+ .+.+.  ...+.......+....+.+..|.+.||.|+|         .....+..........
T Consensus        16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~~~~~~   85 (338)
T COG0477          16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR---------KVLIIGLLLFLLGTLL   85 (338)
T ss_pred             HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch---------HHHHHHHHHHHHHHHH
Confidence            3334444556656655 44444  4678888888888888889999999999754         2222333222222222


Q ss_pred             hhcCCc--hhHHHHHHHHHHHhhhhcccchhhhhhhcccc--chhHHHHHHHH-HHHHHHHHHHHHhhHhhcc
Q 016338          292 LNYAKS--PAVAAVLITIALSLSSFSQAGYLLNIQEIAPD--CAGFLHGIANS-AGTLAAIISTIGTGYFVQW  359 (391)
Q Consensus       292 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~-~~~~g~~i~~~~~g~l~~~  359 (391)
                      .....+  ...........+...+...+.......+..|+  +|+...+.... ....+..++|.+.+.+.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          86 LALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222  33333333333333445566677777787774  78888888888 5777888888777777655

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.33  E-value=0.88  Score=42.21  Aligned_cols=177  Identities=12%  Similarity=0.189  Sum_probs=103.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 016338          201 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  280 (391)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  280 (391)
                      ..+.+....++.....-....-.|.++.+.+.-+-.-.+.....-.+..++..+..|...||..|.+..+...  ..--.
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l--~~Qn~   80 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSL--VVQNL   80 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHH--HHHHH
Confidence            4456677888888888888888999999976656555666666667778888889999999987654221111  11111


Q ss_pred             HhHhhHHHHHH-hhcCCc----hhHHHHHHH---HHHHhhhhcccchh-hhhh-------hccccchhHHHHHHHHHHHH
Q 016338          281 GFIGPGVSLLC-LNYAKS----PAVAAVLIT---IALSLSSFSQAGYL-LNIQ-------EIAPDCAGFLHGIANSAGTL  344 (391)
Q Consensus       281 ~~~~~~~~~~~-~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~g~~~~~~~~  344 (391)
                      +....+..+.. +...+.    .+....++.   .............. ..-+       +-.++...+.++.+.-+=..
T Consensus        81 sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~  160 (432)
T PF06963_consen   81 SVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLF  160 (432)
T ss_pred             HHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHH
Confidence            22222222222 222111    222222211   11111222222111 1111       22234555666666666667


Q ss_pred             HHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHH
Q 016338          345 AAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIF  380 (391)
Q Consensus       345 g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (391)
                      ...++|.+.|.+.+..+ +.....+.++..+++...
T Consensus       161 ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  161 CKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHH
Confidence            99999999999999877 777777777777777764

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.22  E-value=0.06  Score=52.45  Aligned_cols=181  Identities=10%  Similarity=0.044  Sum_probs=116.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  279 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  279 (391)
                      +.+..+.....+......++....-+-+++.++++..+.|++.+..-++..+......+...|..|.         ..+.
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrP---------r~Ig  166 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRP---------RWIG  166 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCcc---------ceee
Confidence            3444433333333333335555555667778999999999999999999999998888888887754         3334


Q ss_pred             HHhHhhHHHHHHhhcC------------------------------------------------CchhHHHHHHHHHHHh
Q 016338          280 IGFIGPGVSLLCLNYA------------------------------------------------KSPAVAAVLITIALSL  311 (391)
Q Consensus       280 ~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~~~  311 (391)
                      .+.+.++++.++....                                                .+....+.+++++-..
T Consensus       167 ~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l  246 (735)
T KOG3626|consen  167 IGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLL  246 (735)
T ss_pred             echhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHH
Confidence            4555554444433210                                                0011133344444444


Q ss_pred             hhhc----ccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcc------------------ccchhHHHH
Q 016338          312 SSFS----QAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW------------------LGSFQAFLT  368 (391)
Q Consensus       312 ~~~~----~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~------------------~g~~~~~~~  368 (391)
                      .+..    ++.-.+++.|... ++.....|+..++..+|=++|=.+++.+...                  .|.|+..|+
T Consensus       247 ~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFL  326 (735)
T KOG3626|consen  247 LGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFL  326 (735)
T ss_pred             hhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHH
Confidence            4433    3334566777666 6788899999988888888877777776532                  245777788


Q ss_pred             HHHHHHHHHHHHHHHhccCcc
Q 016338          369 VTAGLYFVTTIFWNLYSTGER  389 (391)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~  389 (391)
                      +.+.+.+++.+.+++++|+.+
T Consensus       327 i~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  327 ICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHHHHhCcccCc
Confidence            888888888888888876543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.14  E-value=0.06  Score=48.94  Aligned_cols=115  Identities=17%  Similarity=0.090  Sum_probs=82.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhh-hhccchHHHHHHHHHHHhhhhchhhhHH
Q 016338           16 SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AATHSTASLLAVRAFFGLAEGVAMPAMS   94 (391)
Q Consensus        16 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~r~l~G~g~~~~~~~~~   94 (391)
                      .++..+....|.+|..++..-...+  |+.+-+++.+-..+..+..++.++ -+.++.|..++.-+..|+..|..++-..
T Consensus       280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF  357 (402)
T PF02487_consen  280 RDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF  357 (402)
T ss_pred             HHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4556677777777766665533221  343333443333333333333322 2347888888999999999999999999


Q ss_pred             HHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHH
Q 016338           95 TLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML  132 (391)
Q Consensus        95 ~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~  132 (391)
                      ..+.|-.|+++|..++|..+.+-+.|..++..++-.+-
T Consensus       358 ~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  358 YRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998876553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.13  E-value=0.0074  Score=54.74  Aligned_cols=151  Identities=17%  Similarity=0.134  Sum_probs=101.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 016338          201 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  280 (391)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  280 (391)
                      +........+...+++..=.++.|+|+++ .|.+.+..+.+.....+.+.+.+++.|..+||...|-    ..||..+..
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~----GRRRPfI~~  107 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRY----GRRRPFILA  107 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceeccccccccccccccc----ccccchHHH
Confidence            44455566666777777777999999999 7999999999988888899999999999999864331    115566666


Q ss_pred             HhHhhHHHHHHhhcCCch-------------hHHHHHHHHHHHh----hhhcccchhhhhhhccc-cchhH-HHHHHHHH
Q 016338          281 GFIGPGVSLLCLNYAKSP-------------AVAAVLITIALSL----SSFSQAGYLLNIQEIAP-DCAGF-LHGIANSA  341 (391)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~-~~g~~~~~  341 (391)
                      +.....+.++++++..+.             ...+....++...    ........-++..|... +++.+ +++.....
T Consensus       108 ~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f  187 (498)
T KOG0637|consen  108 GSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFF  187 (498)
T ss_pred             hhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHH
Confidence            777777777666543211             1222333333322    22334445556666554 55555 88888888


Q ss_pred             HHHHHHHHHHHhhHh
Q 016338          342 GTLAAIISTIGTGYF  356 (391)
Q Consensus       342 ~~~g~~i~~~~~g~l  356 (391)
                      ..+|+.+|-.+.++.
T Consensus       188 ~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  188 MAVGNVLGYALGSYL  202 (498)
T ss_pred             HHhcceeeeeccccc
Confidence            888888887776643

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.15  Score=47.23  Aligned_cols=104  Identities=14%  Similarity=0.194  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhhhhhh---hhcCchHHHHHHHHHHHHHHhhhhhhhc----------------cchHHHHHHHHHHHhhh
Q 016338           26 FLWGYIFSSVIGGALV---DKYGGKKVLAWGVALWSLSTLLTPWAAT----------------HSTASLLAVRAFFGLAE   86 (391)
Q Consensus        26 ~~~~~~~~~~~~g~l~---dr~Grr~~~~~~~~~~~~~~~~~~~a~~----------------~~~~~~~~~r~l~G~g~   86 (391)
                      ..++..++..+.+.+.   +|+||++.+.++..+..++.++.-....                +++....+.-++.|++.
T Consensus       288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D  367 (461)
T KOG3098|consen  288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD  367 (461)
T ss_pred             HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence            3344455555566665   4679999999999988888877533221                23557778889999999


Q ss_pred             hchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHH
Q 016338           87 GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI  130 (391)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~  130 (391)
                      +......+.++++.+ +++|..+.++...-..++..++......
T Consensus       368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999 5888888888887777777666554443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.24  E-value=2.3  Score=38.77  Aligned_cols=183  Identities=9%  Similarity=-0.001  Sum_probs=91.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  279 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  279 (391)
                      -.++...+........+..+.+-.+.|.++..+.+.  +..+.......+.+...+.-.+..|...|...+   -...+.
T Consensus        18 ~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~---~~~~l~   92 (406)
T KOG1479|consen   18 LVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTR---VGYLLS   92 (406)
T ss_pred             cHHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            345556666666677778787777767666444444  444444455555555555555555544331000   111111


Q ss_pred             HHhHhhH-HHHHHhhcCC-c----hhHHHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHh
Q 016338          280 IGFIGPG-VSLLCLNYAK-S----PAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGT  353 (391)
Q Consensus       280 ~~~~~~~-~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~  353 (391)
                      ...+... ...+.....+ .    ...............+......+-...+.++|.....++-.+..+.+.+...-..-
T Consensus        93 ~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~i~tk  172 (406)
T KOG1479|consen   93 LIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLRILTK  172 (406)
T ss_pred             HHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHHHHHH
Confidence            1111111 1111110111 1    12223334444445556666677777778777766555545544444433333333


Q ss_pred             hHhhccccchhHHHHHHHHHHHHHHHHHHHhccC
Q 016338          354 GYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTG  387 (391)
Q Consensus       354 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (391)
                      ....|.-.+-...|.+..+..+++.+++...+|.
T Consensus       173 a~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~l  206 (406)
T KOG1479|consen  173 AAFSDSRTSALIYFITSTVILLLCFVLYLVLPKL  206 (406)
T ss_pred             HhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcc
Confidence            3333333335667777778888888887754443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.16  E-value=0.0039  Score=59.54  Aligned_cols=165  Identities=12%  Similarity=0.033  Sum_probs=1.1

Q ss_pred             HHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhh
Q 016338          214 WGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN  293 (391)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (391)
                      ....++..-.-+-++++++++..++|.+.+..-++..+..++..++.+|.+         |...+..+.++++++.+++.
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~h---------rprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGH---------RPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---------CcceeeecHHHHHHHHHHHh
Confidence            444444444445567779999999999999999999999999999988865         33445566666666655543


Q ss_pred             cCC----------------------------------------------chhHHHHHHHHHHHhhhhc----ccchhhhh
Q 016338          294 YAK----------------------------------------------SPAVAAVLITIALSLSSFS----QAGYLLNI  323 (391)
Q Consensus       294 ~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~  323 (391)
                      ..+                                              ........++++-...+..    ++.-.+++
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            210                                              0001223333333333333    33345567


Q ss_pred             hhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcc---------------------ccchhHHHHHHHHHHHHHHHHH
Q 016338          324 QEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW---------------------LGSFQAFLTVTAGLYFVTTIFW  381 (391)
Q Consensus       324 ~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~---------------------~g~~~~~~~~~~~~~~~~~~~~  381 (391)
                      .|..+ ++.+...|+......+|-++|=.+++...+.                     .|.|...|.+.+.+.++..+.+
T Consensus       167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl  246 (539)
T PF03137_consen  167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL  246 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77555 6778888888888877777777777766532                     2345566677777777777766


Q ss_pred             HHhccC
Q 016338          382 NLYSTG  387 (391)
Q Consensus       382 ~~~~~~  387 (391)
                      ..++|+
T Consensus       247 ~~FPk~  252 (539)
T PF03137_consen  247 FFFPKK  252 (539)
T ss_dssp             ------
T ss_pred             HcCCcc
Confidence            666553

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=95.06  E-value=1.4  Score=38.75  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=66.5

Q ss_pred             HHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHHHHhhhhcCc--cc
Q 016338           28 WGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPS--HE  105 (391)
Q Consensus        28 ~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~--~~  105 (391)
                      +..+.++.+.+.+..++|-|+++.++...+...-...   .-+.++.++-+....|++.+..+..--+++++.-..  +.
T Consensus        69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N---l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~  145 (390)
T KOG3097|consen   69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN---LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ  145 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh---cchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence            3445566666689999999999999988877655443   237888999999999999998887666666554322  22


Q ss_pred             h-------------hhHHHHHHhhhhhhHHHHhhHH
Q 016338          106 R-------------ASAIGICMGGFHLGNVVGLLLT  128 (391)
Q Consensus       106 r-------------g~~~~~~~~~~~lg~~~g~~~~  128 (391)
                      |             |....+++...-.|..+...+-
T Consensus       146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~  181 (390)
T KOG3097|consen  146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIM  181 (390)
T ss_pred             hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            3             3344455555555555555443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.95  E-value=0.3  Score=44.59  Aligned_cols=86  Identities=7%  Similarity=-0.104  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhhhhcccchhhhhhhccc----cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHH
Q 016338          300 VAAVLITIALSLSSFSQAGYLLNIQEIAP----DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYF  375 (391)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~  375 (391)
                      ...+...+.....+..=+.......|.++    +++.+.........++|..+++...+++.++.| |...|.+..+..+
T Consensus        35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~  113 (372)
T PF00854_consen   35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGML  113 (372)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccc-hhhhhhHHHHHHH
Confidence            44444444445555666667777766555    346778888899999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHhcc
Q 016338          376 VTTIFWNLYST  386 (391)
Q Consensus       376 ~~~~~~~~~~~  386 (391)
                      ++.+.++.-++
T Consensus       114 ~~~~~f~~~~~  124 (372)
T PF00854_consen  114 LALIVFLSGRK  124 (372)
T ss_dssp             HHHHHHHCCCC
T ss_pred             HHHHHHHhCCc
Confidence            99887765543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=94.42  E-value=0.01  Score=52.55  Aligned_cols=55  Identities=7%  Similarity=0.054  Sum_probs=2.0

Q ss_pred             hHHHHHHHHHHHhhhhcccchhhhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHh
Q 016338          299 AVAAVLITIALSLSSFSQAGYLLNIQEI-APDCAGFLHGIANSAGTLAAIISTIGT  353 (391)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~  353 (391)
                      +..++..++.+...+......+.+..+. .|++|..+..+....-..|-.+|..+.
T Consensus       249 ~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  249 AWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             ------------------HHHH----------------------------------
T ss_pred             HHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444455554443 346777776666666666666666543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=93.18  E-value=3.2  Score=37.49  Aligned_cols=179  Identities=12%  Similarity=0.108  Sum_probs=87.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHH-----HHHhhccchhHHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASD-----SLIKAGYSLTLVR  274 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~~~~~~~~~~~~  274 (391)
                      +++..+.+.+..+........ -+|..++. .|.|-.+.+.......=  .---++...+.|     |+|||       |
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~Grr-------k   99 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRR-------K   99 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccc-------c
Confidence            466777777777777766555 88888886 57777666655333211  112345556666     89987       4


Q ss_pred             HHHHHHHhHhhHHHHHHhhcCC--------chhHHH--HHHHHHHHhhhhcccchhhh-hhhccccchhHHHHHHHHHHH
Q 016338          275 KIMQSIGFIGPGVSLLCLNYAK--------SPAVAA--VLITIALSLSSFSQAGYLLN-IQEIAPDCAGFLHGIANSAGT  343 (391)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~  343 (391)
                      .++.-.-.++......+....+        .+....  ..+++.-+.....-...... .....|++.|-++........
T Consensus       100 sWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~  179 (510)
T KOG3574|consen  100 SWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQT  179 (510)
T ss_pred             ceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHh
Confidence            4443333333333332222211        111111  12222222222222233332 233445666665555554555


Q ss_pred             HHHHHHHHHhhHhhc----------c---cc--chhHHHHHHHHHHHHHHHHHHHhccCcc
Q 016338          344 LAAIISTIGTGYFVQ----------W---LG--SFQAFLTVTAGLYFVTTIFWNLYSTGER  389 (391)
Q Consensus       344 ~g~~i~~~~~g~l~~----------~---~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (391)
                      .|.+++..+.=.+..          .   .|  ......++-+...+++..+..+.+++++
T Consensus       180 ~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~  240 (510)
T KOG3574|consen  180 AGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKEND  240 (510)
T ss_pred             hhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            555555544322221          0   01  1234455566666666666666666654

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=93.11  E-value=1.6  Score=37.12  Aligned_cols=38  Identities=8%  Similarity=-0.176  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhh----CCCcchhhHHhh
Q 016338          206 IIANITNNWGYFVLLSWMPIYFNTVF----NVNLKQAAWFSA  243 (391)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~  243 (391)
                      .+.........++.+..=..|.+++.    +-|.....+.++
T Consensus       184 G~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs  225 (254)
T PF07857_consen  184 GIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFS  225 (254)
T ss_pred             hHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHH
Confidence            44444444555666555556777753    334444444444

The region concerned is approximately 280 residues long.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.99  E-value=1.3  Score=37.79  Aligned_cols=136  Identities=13%  Similarity=0.153  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcCch--HHHHHHHHHHHHHHhhhhh--hhcc---chHHHHHHHHHHHhhhhchhh
Q 016338           19 LGIVQSSFLWGYIFSSVIGGALVDKYGGK--KVLAWGVALWSLSTLLTPW--AATH---STASLLAVRAFFGLAEGVAMP   91 (391)
Q Consensus        19 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--a~~~---~~~~~~~~r~l~G~g~~~~~~   91 (391)
                      -|.+.+.++++.++|+-+..++..|-.+|  ..+.+..+.......+.-.  ..++   +...-+++-.+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            58999999999999999999998876655  3455544444443333211  1122   122225556666677889999


Q ss_pred             hHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 016338           92 AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST  154 (391)
Q Consensus        92 ~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  154 (391)
                      ....+=+++.|++.|...+.+...-.++=..++-..--.-....+=|..|-+......+..+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            999999999999999999988765554422222111000001134566777766666554443

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=90.38  E-value=7.1  Score=35.25  Aligned_cols=124  Identities=14%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHH------hhhhhhh----ccchHHHHHHHHHHH----hhhhchhhh
Q 016338           27 LWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST------LLTPWAA----THSTASLLAVRAFFG----LAEGVAMPA   92 (391)
Q Consensus        27 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~------~~~~~a~----~~~~~~~~~~r~l~G----~g~~~~~~~   92 (391)
                      .....+..++.|...|+..|+|++...+.+.=++.      ++.-+..    +.+++.+...-++.-    ++.=.....
T Consensus        73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~  152 (503)
T KOG2601|consen   73 SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAG  152 (503)
T ss_pred             HhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34456778889999999999998877665432222      2221111    124444443333332    221111111


Q ss_pred             HHHHhhhhc----CccchhhHH---HHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHH
Q 016338           93 MSTLTSRWF----PSHERASAI---GICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLL  150 (391)
Q Consensus        93 ~~~~i~~~~----~~~~rg~~~---~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  150 (391)
                      ....-.||.    ..+.+....   +.....-.....+.|++.|.+.+..+-|..-...++.+++
T Consensus       153 ~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  153 TILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             eEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence            112223443    223343333   4555555666788999999998888878766666655555

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=90.26  E-value=14  Score=35.82  Aligned_cols=170  Identities=13%  Similarity=0.060  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHh
Q 016338          205 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG  284 (391)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  284 (391)
                      ....-.+-...+++...-+-.|+.+.++.+...+.-....+........+.+++++|.+-.|        -..+.++..+
T Consensus        42 il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gr--------y~tI~~~s~i  113 (571)
T KOG1237|consen   42 ILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGR--------YFTINIGSLI  113 (571)
T ss_pred             HHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHH
Confidence            33334445555566666777888888888887777777777777777788999999998653        3333344433


Q ss_pred             hHHHHHHhhc-------C-------------Cchh-----HHHHHHHHHHHhhhhcccchhhhhhhccc-----c--chh
Q 016338          285 PGVSLLCLNY-------A-------------KSPA-----VAAVLITIALSLSSFSQAGYLLNIQEIAP-----D--CAG  332 (391)
Q Consensus       285 ~~~~~~~~~~-------~-------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~  332 (391)
                      ..+++..+..       .             +.+.     .+.....+.....+..-+.......|-++     +  ...
T Consensus       114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~  193 (571)
T KOG1237|consen  114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIP  193 (571)
T ss_pred             HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcc
Confidence            3333222211       0             0011     11111111111223334445555544333     2  234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 016338          333 FLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       333 ~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      +-+.......+.|..++..+.-++-|+.| |...|.+..+..+++.++++.
T Consensus       194 ~fFnW~yf~~~~g~l~a~t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  194 SFFNWFYFSQNGGALLAQTVLVYIQDNVG-WKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhccc-ceeeccHHHHHHHHHHHHHHc
Confidence            66777778888899999998888888877 888888888888888777654

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=88.51  E-value=0.17  Score=42.50  Aligned_cols=62  Identities=3%  Similarity=0.081  Sum_probs=43.9

Q ss_pred             cHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHH
Q 016338          192 SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSG  253 (391)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  253 (391)
                      ++..-+++-.+.-+.+.+.+.-.....-..|+|.|..+.++++.+.-+++-.+..+.....+
T Consensus       193 ~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS  254 (412)
T KOG4830|consen  193 HWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVS  254 (412)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHH
Confidence            44555666677777888888777777788899999888888877766666555555444443

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=86.26  E-value=15  Score=33.22  Aligned_cols=174  Identities=16%  Similarity=0.210  Sum_probs=86.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  279 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  279 (391)
                      +....+...++......-....-...|+.+-.|-|....+.....-+....+-..+.|...|+..|+|......  .+--
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L--~lqN  104 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWL--LLQN  104 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHH--hhcc
Confidence            33444455666666666666666777777755545555555555555556666777788888888664221111  1111


Q ss_pred             HHhHhhHHHHH-HhhcC----CchhHHHHHHHHHHHhhhhcc----cchhhhhhh--------ccccchhHHHHHHHHHH
Q 016338          280 IGFIGPGVSLL-CLNYA----KSPAVAAVLITIALSLSSFSQ----AGYLLNIQE--------IAPDCAGFLHGIANSAG  342 (391)
Q Consensus       280 ~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~g~~~~~~  342 (391)
                      .+...++.... ++...    .+.++...+.++.........    ........|        -.|+......+.....-
T Consensus       105 lSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iD  184 (503)
T KOG2601|consen  105 LSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGID  184 (503)
T ss_pred             HHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhh
Confidence            12222222221 11121    122333333333332222211    111111111        12233334445555566


Q ss_pred             HHHHHHHHHHhhHhhccccchhHHHHHHHHHHHH
Q 016338          343 TLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFV  376 (391)
Q Consensus       343 ~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~  376 (391)
                      .....+.|.+.|.+....+ .+..-...++...+
T Consensus       185 q~tn~Lapv~tg~Iitfvs-l~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  185 QSTNLLAPVITGLIITFVS-LRASAGTFAAWALV  217 (503)
T ss_pred             hhhhchhhhhhcccceeec-hhhhhhhhHHHHHH
Confidence            6788999999999988766 55544444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	391
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-57
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	6e-05
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	5e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  192 bits (491), Expect = 2e-57
 Identities = 70/386 (18%), Positives = 135/386 (34%), Gaps = 13/386 (3%)

Query: 5   VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLT 64
            +P   + G+S   LG   S     Y FS  I G++ D+   +  L  G+ L +   L  
Sbjct: 50  AMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM 109

Query: 65  PWA--ATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNV 122
            +   AT S A +  +    G  +G+  P        W+   ER   + +     ++G  
Sbjct: 110 GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 169

Query: 123 VG-LLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGK 181
           +  LL    M           + +   +L      + + + P +       E +      
Sbjct: 170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD 229

Query: 182 SDSVKKRNPP----SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
            +   ++        ++++L     W + IAN+      + +L W P Y   V +  L +
Sbjct: 230 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 289

Query: 238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
           ++W   +          + G  SD + +     T V      +  +     +  +N A +
Sbjct: 290 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF----MTLVTIATIVYWMNPAGN 345

Query: 298 PAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGY 355
           P V  + + +   L         L+  E+AP   AG   G     G L  ++ ++   GY
Sbjct: 346 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405

Query: 356 FVQWLGSFQAFLTVTAGLYFVTTIFW 381
            V + G    F+ +  G      +  
Sbjct: 406 TVDFFGWDGGFMVMIGGSILAVILLI 431

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 2/143 (1%)

Query: 8   LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA 67
           +A         +  V  ++L  Y  S +  G + D+ G + V+  G++++ L+TL+    
Sbjct: 26  MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA--V 83

Query: 68  ATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLL 127
            T S   L+A  A  G+  GV      TL    +   +   A  +   G  +  ++  L+
Sbjct: 84  TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI 143

Query: 128 TPIMLSTIGISGPFILFSSLGLL 150
             ++ +       ++    L   
Sbjct: 144 GGLLDTMWNWRACYLFLLVLCAG 166

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 40/287 (13%), Positives = 85/287 (29%), Gaps = 18/287 (6%)

Query: 2   SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST 61
            + +      F  ++   G++QS+F +GY    +  G L+ K   K  +  G+ L++L  
Sbjct: 46  DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105

Query: 62  LLTPWAATHSTASLLAVRAFFGLAEGVAM--PAMSTLTSRWFPSHERASAIGICMGGFHL 119
            L  W A       L +   F +A G+     A +   +   P       + +       
Sbjct: 106 AL-FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164

Query: 120 GNVVGLLLTPIMLSTIGISGPFILFSSL---GLLWLSTWTSKVTNDP---------CNSP 167
           G ++ ++    ++ +        +   +    L             P           + 
Sbjct: 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVAL 224

Query: 168 FVSKSELRLIQAGKSDSVKKRNPP-SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIY 226
            +  ++   +Q+      K+ +   SL  L         ++A            S++  Y
Sbjct: 225 LIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY 284

Query: 227 FNTVF-NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTL 272
                  +    AA +         + G   G    S       L  
Sbjct: 285 AVEEIPGMTAGFAANYLTGTMVCFFI-GRFTGTWLISRFAPHKVLAA 330

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	391
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.56
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.54
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.51
2xut_A	524	Proton/peptide symporter family protein; transport	99.5
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.48
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.36
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.35

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=6.3e-42  Score=319.30  Aligned_cols=374  Identities=17%  Similarity=0.217  Sum_probs=297.2

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhh--ccchHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA--THSTASLLAVR   79 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~r   79 (391)
                      ++.+|.+.+|+ .|.++.|++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++..  ++|++.+++.|
T Consensus        48 ~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  126 (451)
T 1pw4_A           48 ALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL  126 (451)
T ss_dssp             HHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred             HHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence            35678899999 9999999999999999999999999999999999999999999999999995510  59999999999


Q ss_pred             HHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcC-chhHHHHHHHHHHHHHHHHhhc
Q 016338           80 AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      +++|++.+...+...+++.|++|+|+|++++++.+...++|..++|.+++.+.+..| ||+.|++.+++.++..++.++.
T Consensus       127 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~  206 (451)
T 1pw4_A          127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM  206 (451)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999889898 9999999999888877777777


Q ss_pred             cccCCCCCCCCChhHHHHH--HcCCCcccccCCCcc--HHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCC
Q 016338          159 VTNDPCNSPFVSKSELRLI--QAGKSDSVKKRNPPS--LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN  234 (391)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  234 (391)
                      .||+|++.+..++++.+..  ++..++++++....+  .++.+|+|.++...+..++..........+.|.|+++.+|.+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  286 (451)
T 1pw4_A          207 MRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFA  286 (451)
T ss_dssp             CCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCC
T ss_pred             ccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            7887665432221111000  000001111111222  477889999999999999999999999999999999988999


Q ss_pred             cchhhHHhhhHHHHHHHHHHHHHHHHHHH--HhhccchhHHHHHHHHHHhHhhHHHHHHhhcCC--chhHHHHHHHHHHH
Q 016338          235 LKQAAWFSAVPWGTMAVSGYMAGKASDSL--IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIALS  310 (391)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  310 (391)
                      +.+.+.+.+...++.+++.++.+++.||+  ++|        +.......+...++...+...+  +.+.......+.+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  358 (451)
T 1pw4_A          287 LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--------GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF  358 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--------HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998  753        2333333333325555554443  33333333333334


Q ss_pred             hhhhcccchhhhhhhccc-cchhHHHHHHHHHHHH-HHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhc
Q 016338          311 LSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      ......+....+..|..| ++|+++.|+.+...++ |..++|.+.|.+.|..| +...+.+.+++.+++.++.+...
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555677777777 7899999999999999 99999999999999988 89999988888888877766554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=4.9e-40  Score=305.43  Aligned_cols=360  Identities=13%  Similarity=0.082  Sum_probs=288.9

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhh-hhccchHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AATHSTASLLAVRA   80 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~r~   80 (391)
                      ++.+|.+.+++|.|+++.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+++.. ..+++++.+++.|+
T Consensus        46 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (438)
T 3o7q_A           46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF  125 (438)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999998822 23499999999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHH-hhcC-----------------------
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-STIG-----------------------  136 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~-~~~g-----------------------  136 (391)
                      +.|++.+...+...+++.|++|+|+|++++++.+...++|..+++.+++.+. +..+                       
T Consensus       126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (438)
T 3o7q_A          126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLV  205 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhh
Confidence            9999999999999999999999999999999999999999999999999998 5554                       


Q ss_pred             --chhHHHHHHHHHHHHHHHHhhc-cccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHH
Q 016338          137 --ISGPFILFSSLGLLWLSTWTSK-VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNN  213 (391)
Q Consensus       137 --wr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (391)
                        ||+.|++.+.+.++..++.++. .||++++++++              +++++...++++++|+|.++...+..++..
T Consensus       206 ~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (438)
T 3o7q_A          206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD--------------AKQGSFSASLSRLARIRHWRWAVLAQFCYV  271 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC--------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc--------------ccccchhhhHHHHHhChHHHHHHHHHHHHH
Confidence              9999988887776655554433 33333221111              011122346788999999999999999999


Q ss_pred             HHHHHHHHhhHHH-HHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHh
Q 016338          214 WGYFVLLSWMPIY-FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  292 (391)
Q Consensus       214 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      ........+.|.| +++.+|.++.+++...+...++..+++++.+++.||+++|         ..+..+.+...+.....
T Consensus       272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~~~~~~~~~~~~~~~~  342 (438)
T 3o7q_A          272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH---------KVLAAYALIAMALCLIS  342 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---------HHHHHHHHHHHHHHHHH
Confidence            9999999999999 8887899999999999999999999999999999999853         45555666666666666


Q ss_pred             hcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHH
Q 016338          293 NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAG  372 (391)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~  372 (391)
                      ...++........+.+ ...+...+....+..|..|++++.+.++.. ...+++.++|.+.|.+.|..|++...+.+.++
T Consensus       343 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  420 (438)
T 3o7q_A          343 AFAGGHVGLIALTLCS-AFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL  420 (438)
T ss_dssp             HHCCHHHHHHHHHHHH-HHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHH
T ss_pred             HHcCCcHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            6655554444443333 444445566777767777766888888877 77899999999999999998877888887766


Q ss_pred             HHHHHHHHHHHhcc
Q 016338          373 LYFVTTIFWNLYST  386 (391)
Q Consensus       373 ~~~~~~~~~~~~~~  386 (391)
                      +.++..+..+..+|
T Consensus       421 ~~~~~~~~~~~~~~  434 (438)
T 3o7q_A          421 CFAVIFIFARFRSQ  434 (438)
T ss_dssp             HHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHh
Confidence            66555554443333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=7.1e-39  Score=291.57  Aligned_cols=341  Identities=14%  Similarity=0.105  Sum_probs=279.3

Q ss_pred             ccchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHH
Q 016338            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (391)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l   81 (391)
                      ++.+|.+.+|+|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.++.++  ++|++.+++.|++
T Consensus        20 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l   97 (375)
T 2gfp_A           20 IPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT--TSSLTVLIAASAM   97 (375)
T ss_dssp             HHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH--hccHHHHHHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999854  4999999999999


Q ss_pred             HHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhcccc
Q 016338           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (391)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  161 (391)
                      .|++.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+.+..|||+.|.+.+++.++..+...+..||
T Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (375)
T 2gfp_A           98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE  177 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred             HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            99999999999999999999999999999999999999999999999999998999999999998888777766666676


Q ss_pred             CCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHH
Q 016338          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (391)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  241 (391)
                      ++++++++                 ++..+++++.+|+|+++...+..++..........+.|.|+++.+|.++.+.+.+
T Consensus       178 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  240 (375)
T 2gfp_A          178 TRPVDAPR-----------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSIL  240 (375)
T ss_dssp             CSTTTCCC-----------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred             cCCCCccc-----------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            65432211                 1123356788899999999999999999999999999999999889999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHh-HhhHHHHHHhhc--CCchhHHHHHHHHHHHhhhhcccc
Q 016338          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGF-IGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAG  318 (391)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  318 (391)
                      .....++..+++++.+++.||.+++         ....... ...+........  .++.+.......+.+...+...+.
T Consensus       241 ~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  311 (375)
T 2gfp_A          241 FILPIPAAFFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPL  311 (375)
T ss_dssp             HHTHHHHHHHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999998742         1111111 111111111111  123333334444444555666777


Q ss_pred             hhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHH
Q 016338          319 YLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTA  371 (391)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~  371 (391)
                      ......|..|++|+++.|+.+...++|..++|.+.|.+.|..+ +...+....
T Consensus       312 ~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~~~  363 (375)
T 2gfp_A          312 ATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSLGLLMTL  363 (375)
T ss_dssp             THHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHH
Confidence            7888888888999999999999999999999999999988755 766666543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=1.1e-35  Score=280.36  Aligned_cols=367  Identities=14%  Similarity=0.103  Sum_probs=263.6

Q ss_pred             hCCChhhHHHHHHHHHHHHHHHHHhhhhhhhh-cCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchh
Q 016338           12 FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAM   90 (391)
Q Consensus        12 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~   90 (391)
                      +|.|.++.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.++++  .++|++.+++.|+++|++.+...
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA--LPFGASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH--SCCSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999 8999999999999999999984  45999999999999999999999


Q ss_pred             hhHHHHhhhhcCccc--hhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCCCCC--
Q 016338           91 PAMSTLTSRWFPSHE--RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS--  166 (391)
Q Consensus        91 ~~~~~~i~~~~~~~~--rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~--  166 (391)
                      +...+++.|++|+++  |++++++.+...++|..++|.+++.+.+..|||+.|++.++..++..+......++..+++  
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL  206 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence            999999999999988  7788888999999999999999999999999999999987777665555444333322111  


Q ss_pred             -CCC--ChhHHHH-HHc-------------------CCCccc--------------------ccCCCccHHHhhcCCchH
Q 016338          167 -PFV--SKSELRL-IQA-------------------GKSDSV--------------------KKRNPPSLRHLLSKLPSW  203 (391)
Q Consensus       167 -~~~--~~~~~~~-~~~-------------------~~~~~~--------------------~~~~~~~~~~~~~~~~~~  203 (391)
                       ++.  ++++.+. .+.                   ..+.++                    .++...+..+..+....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (491)
T 4aps_A          207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI  286 (491)
T ss_dssp             CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence             111  1111111 000                   000000                    000011111111223345


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhH
Q 016338          204 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  283 (391)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  283 (391)
                      ...+........+.....++|.|.++..+.+..+.+.......+...++.++.+++.||++||+...    ...+..+..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~----~~~~~~~~~  362 (491)
T 4aps_A          287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS----PTKFAVGLM  362 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc----hHHHHHHHH
Confidence            5555566666666667788889999888888788888888999999999999999999999874321    122334444


Q ss_pred             hhHHHHHHhhcC---------CchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHh
Q 016338          284 GPGVSLLCLNYA---------KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT  353 (391)
Q Consensus       284 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~  353 (391)
                      ..+++...+...         .+.+......++.+...+...+....+..|..| ++|+++.|+.+...++|..++|.+.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~  442 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV  442 (491)
T ss_dssp             HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444333321         133444444444444455556667778888777 7899999999999999999999999


Q ss_pred             hHhhccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 016338          354 GYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  386 (391)
Q Consensus       354 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (391)
                      +.+.|. + +...+...+.+.+++.+..+...+
T Consensus       443 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          443 TLYNAK-S-EVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             GGGGGS-S-TTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHhcc-c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988775 4 667777777777777666655544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=6.9e-34  Score=267.95  Aligned_cols=375  Identities=17%  Similarity=0.135  Sum_probs=257.5

Q ss_pred             ccchhhHHHHhCC--------ChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhh------
Q 016338            2 SVAVVPLAAKFGW--------SSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA------   67 (391)
Q Consensus         2 ~~~~~~i~~~~~~--------s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a------   67 (391)
                      +..+|.+.++++.        ++++.|++.+.+.+|..++++++|+++||+|||+++.++.+++.++.+++++.      
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~  111 (491)
T 4gc0_A           32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTS  111 (491)
T ss_dssp             GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred             HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            5677888888743        34568999999999999999999999999999999999999999999998632      


Q ss_pred             ----------hccchHHHHHHHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh---
Q 016338           68 ----------ATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST---  134 (391)
Q Consensus        68 ----------~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~---  134 (391)
                                .++|+++++++|+++|+|.|...+....+++|+.|+++|++..+..+.+...|..+++.++......   
T Consensus       112 ~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  191 (491)
T 4gc0_A          112 INPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA  191 (491)
T ss_dssp             SSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             hcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc
Confidence                      3689999999999999999999999999999999999999999999999999999999888776543   


Q ss_pred             -----cCchhHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhH--HHHHHcC-------------CCcccccCCCccHH
Q 016338          135 -----IGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSE--LRLIQAG-------------KSDSVKKRNPPSLR  194 (391)
Q Consensus       135 -----~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~~  194 (391)
                           .+||..+.+..+..++..+ ..+..||+|+....+.+++  .+..++.             .+..+++++.....
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (491)
T 4gc0_A          192 SWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRL  270 (491)
T ss_dssp             TTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             ccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHH
Confidence                 3477777776666555444 4556788876321111111  0000000             00000001111122


Q ss_pred             HhhcCCchHHHHHHHHH-HHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 016338          195 HLLSKLPSWTVIIANIT-NNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLV  273 (391)
Q Consensus       195 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~  273 (391)
                      ...+.++.......... .......+..+.|.+.++ .+.+............+...++.++.+++.||+|||       
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-------  342 (491)
T 4gc0_A          271 LMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-------  342 (491)
T ss_dssp             HHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-------
T ss_pred             HHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-------
Confidence            33334444443333333 333445555666666655 677777777777788889999999999999999965       


Q ss_pred             HHHHHHHHhHhhHHHHHHhh----cCCchhHHHHH-HHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHH
Q 016338          274 RKIMQSIGFIGPGVSLLCLN----YAKSPAVAAVL-ITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAI  347 (391)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~  347 (391)
                        ..+..+...+.++++.+.    ........... .+...++.....+..+.+..|.+| +.|+++.|+.+..+++++.
T Consensus       343 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~  420 (491)
T 4gc0_A          343 --PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY  420 (491)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH
T ss_pred             --chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence              333334444443333322    12222222222 222333333344566788899999 8999999999999999999


Q ss_pred             HHHHHhhHhhcccc-----chhHHHHHHHHHHHHHHHHHHHhccC
Q 016338          348 ISTIGTGYFVQWLG-----SFQAFLTVTAGLYFVTTIFWNLYSTG  387 (391)
Q Consensus       348 i~~~~~g~l~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (391)
                      +++.+.+.+.+...     .....+++.+++.+++.++.+++.++
T Consensus       421 i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          421 FVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             HHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence            99999887765321     14456777777777777766555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=100.00  E-value=9.3e-34  Score=261.25  Aligned_cols=367  Identities=15%  Similarity=0.072  Sum_probs=248.6

Q ss_pred             cchhh-HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhh-hhhccch-HHHHHHH
Q 016338            3 VAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP-WAATHST-ASLLAVR   79 (391)
Q Consensus         3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-~a~~~~~-~~~~~~r   79 (391)
                      +.+|. +++++|.|+++.|++.+.+.+++.++++++|+++||+|||+++.++..+.+++..... ....+.. ..+...+
T Consensus        28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (417)
T 2cfq_A           28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS  107 (417)
T ss_dssp             TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45565 5567999999999999999999999999999999999999999988877654221110 0111211 1234456


Q ss_pred             HHHHhhhhchhhhHHHHhhhhcCc--cchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhh
Q 016338           80 AFFGLAEGVAMPAMSTLTSRWFPS--HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (391)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  157 (391)
                      .+.|++.+...+.....+.++.++  ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++..+..+.
T Consensus       108 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~  186 (417)
T 2cfq_A          108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFF  186 (417)
T ss_dssp             HGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCS
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHH
Confidence            666666555544445555555543  456778889989999999999999999887 58999999877765544444333


Q ss_pred             ccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCC---C
Q 016338          158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNV---N  234 (391)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~  234 (391)
                      ..||++++.++. ++        .++++++....++++++|+|+++...+..+.....+..+..+.|.|+++.++.   +
T Consensus       187 ~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (417)
T 2cfq_A          187 AKTDAPSSATVA-NA--------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG  257 (417)
T ss_dssp             SCCCCSCSSCSS-SS--------SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred             cCcccccccccc-cc--------cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            333432211100 00        00011111223456788999988877766666666666777889888775442   2


Q ss_pred             cchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhh
Q 016338          235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSF  314 (391)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (391)
                      ....+...+...++..++.++.+++.||+++|         ..+..+....++........++.+.......+.......
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  328 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPF  328 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH---------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34456777777788889999999999999954         344455566666555555555544443333222222333


Q ss_pred             cccchhhhhhhccc-cchhHHHHHH-HHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCcc
Q 016338          315 SQAGYLLNIQEIAP-DCAGFLHGIA-NSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER  389 (391)
Q Consensus       315 ~~~~~~~~~~~~~~-~~~~~~~g~~-~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (391)
                      ..+....+..|..| +.|+++.+.. +...++|+.++|.+.|.+.|..| +...|.+.+++.+++.+..+...+++|
T Consensus       329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            33445667788777 8899999994 88888999999999999999887 888888888888888777655555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=1.4e-29  Score=240.41  Aligned_cols=373  Identities=12%  Similarity=0.042  Sum_probs=231.2

Q ss_pred             hhHHHHhC------CChhhHHHHHHHHHHHHHHHHHhhhhhhhhc-CchHHHHHHHHHHHHHHhhhhhhhcc-chHHHHH
Q 016338            6 VPLAAKFG------WSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWAATH-STASLLA   77 (391)
Q Consensus         6 ~~i~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~   77 (391)
                      +.+.+++|      .|.++.+++.+.+.++..+++++.|+++||+ |||+++.++.++.+++.++.++  ++ +++.+++
T Consensus        37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  114 (524)
T 2xut_A           37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI--FEHSVQGFYT  114 (524)
T ss_dssp             HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH--TSSCHHHHHH
T ss_pred             HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH--hcccHHHHHH
Confidence            34677889      9999999999999999999999999999999 9999999999999999998854  47 9999999


Q ss_pred             HHHHHHhhhhchhhhHHHHhhhhcCccchhhHHHH---HHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 016338           78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGI---CMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST  154 (391)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~---~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  154 (391)
                      .|++.|++.+...+...+++.|++|+++|+++.+.   .+...++|..++|.+++.+.+..|||+.|++.+++.++..+.
T Consensus       115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  194 (524)
T 2xut_A          115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF  194 (524)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999876666   999999999999999999999899999999988887766555


Q ss_pred             HhhccccCCCCCCCCCh--hHHHHH----HcCCCc-cc-------------------------------------ccCCC
Q 016338          155 WTSKVTNDPCNSPFVSK--SELRLI----QAGKSD-SV-------------------------------------KKRNP  190 (391)
Q Consensus       155 ~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~-~~-------------------------------------~~~~~  190 (391)
                      .....++.++++++.++  +..+..    ++...+ ++                                     +++..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (524)
T 2xut_A          195 FWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGA  274 (524)
T ss_dssp             HHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhccccc
Confidence            44433332211111000  000000    000000 00                                     00000


Q ss_pred             ccHH------------HhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCc---chhhHHhhhHHHHHHHHHHH
Q 016338          191 PSLR------------HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL---KQAAWFSAVPWGTMAVSGYM  255 (391)
Q Consensus       191 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~  255 (391)
                      .+++            +..+.++.+..................+.+.+..+..+.+.   ...+.+.....++..+...+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (524)
T 2xut_A          275 GASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPF  354 (524)
T ss_dssp             GGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGG
T ss_pred             chhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHH
Confidence            0110            00112222222211111111111111222222222122222   24556666655666666666


Q ss_pred             HHHHH----HHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcC---------CchhHHHHHHHHHHHhhhhcccchhhh
Q 016338          256 AGKAS----DSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA---------KSPAVAAVLITIALSLSSFSQAGYLLN  322 (391)
Q Consensus       256 ~g~l~----dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (391)
                      .+++.    ||.++|..     ++..+..+..+.+++...+...         .+.+.......+.+...+...+....+
T Consensus       355 ~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  429 (524)
T 2xut_A          355 NNFVLYPAIERMGVKLT-----ALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEF  429 (524)
T ss_dssp             TTTC------------C-----CHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHhhhHHHHHhcCCCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66653    33332100     1223345555566655555442         233444444444444445556666777


Q ss_pred             hhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhcccc----------chhHHHHHHHHHHHHHHHHHHHhc
Q 016338          323 IQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG----------SFQAFLTVTAGLYFVTTIFWNLYS  385 (391)
Q Consensus       323 ~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
                      ..|..| ++|++++|+.+...++|+.++|.+.|.+.+..+          .....|++.+++.+++.+..+...
T Consensus       430 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (524)
T 2xut_A          430 AYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYA  503 (524)
T ss_dssp             HHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            777776 899999999999999999999999999987431          112336666666666666554443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.56  E-value=2.9e-13  Score=127.02  Aligned_cols=175  Identities=13%  Similarity=0.097  Sum_probs=146.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHHHHhh-----hCCCcchhhHHhhhHHHHHHHHHHHHHHHHHH-HHhhccchhHH
Q 016338          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTV-----FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDS-LIKAGYSLTLV  273 (391)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~  273 (391)
                      |.++......++..+.++....+++.|+++.     +|.+..+.+++.+...++..++.++.|+++|| +|         
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g---------   83 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIG---------   83 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------
Confidence            4567777888888888999999999999998     89999999999999999999999999999999 89         


Q ss_pred             HHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cc--hhHHHHHHHHHHHHHHHHHH
Q 016338          274 RKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DC--AGFLHGIANSAGTLAAIIST  350 (391)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~g~~~~~~~~g~~i~~  350 (391)
                      ||..+..+.+...++.......++.+...+..++.+...+...+....+..|..| ++  |+.+.+..+...++|..++|
T Consensus        84 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  163 (491)
T 4aps_A           84 ARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP  163 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH
Confidence            4466677777788887777777777777766666666666677778888888776 66  77888889999999999999


Q ss_pred             HHhhHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          351 IGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       351 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      .+.+.+.+..| |+..|.+.++..+++.+.....
T Consensus       164 ~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          164 LIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999888 9999998887777777665544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.54  E-value=4.6e-14  Score=130.85  Aligned_cols=155  Identities=11%  Similarity=0.028  Sum_probs=133.3

Q ss_pred             chhhHHHH-hCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhc--CchHHHHHHHHHHH-HHHhhhhhhhccchHHHHHHH
Q 016338            4 AVVPLAAK-FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY--GGKKVLAWGVALWS-LSTLLTPWAATHSTASLLAVR   79 (391)
Q Consensus         4 ~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~r   79 (391)
                      ..|.+.++ +|.+..+.+++.+...++..++.++.|++.||+  |||+.+.++..+.. ++.++..+...++.+.+.+..
T Consensus       274 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (451)
T 1pw4_A          274 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM  353 (451)
T ss_dssp             HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence            34555555 899999999999999999999999999999999  99999888877766 666666433224777888888


Q ss_pred             HHHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhh-hHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhc
Q 016338           80 AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHL-GNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (391)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~l-g~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  158 (391)
                      ++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+..||+..|++.+++.++..+..+..
T Consensus       354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          354 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888899999999999999999999999999 999999999999999999999999888887766665544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.51  E-value=8.7e-13  Score=121.80  Aligned_cols=173  Identities=11%  Similarity=0.007  Sum_probs=134.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 016338          202 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  281 (391)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  281 (391)
                      +....+..+.............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+||         |..+..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~---------r~~l~~~   97 (438)
T 3o7q_A           28 FALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY---------KAGIITG   97 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCH---------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc---------hHHHHHH
Confidence            3344455555566666666777775555 89999999999999999999999999999999994         4566677


Q ss_pred             hHhhHHHHHHh---hcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhh
Q 016338          282 FIGPGVSLLCL---NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV  357 (391)
Q Consensus       282 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~  357 (391)
                      .....++.++.   ...++.+...+.-++.+...+...+....+..|..| ++|+++.++.+....+|..++|.+.+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A           98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777766   666777777776666666667777778888888877 89999999999999999999999999998


Q ss_pred             -ccccc------------------------hhHHHHHHHHHHHHHHHHHHHh
Q 016338          358 -QWLGS------------------------FQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       358 -~~~g~------------------------~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                       +..+.                        ++..+...+....+..+.....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  229 (438)
T 3o7q_A          178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT  229 (438)
T ss_dssp             HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             55554                        6778877776666665555544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.50  E-value=7.6e-13  Score=125.23  Aligned_cols=175  Identities=10%  Similarity=-0.042  Sum_probs=140.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhC------CCcchhhHHhhhHHHHHHHHHHHHHHHHHHH-Hhhccchh
Q 016338          199 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN------VNLKQAAWFSAVPWGTMAVSGYMAGKASDSL-IKAGYSLT  271 (391)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~  271 (391)
                      +|.++...+..++..+.++....+++.|+++++|      .++.+.+.+.+...++..++.++.|+++||+ |+|     
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----   85 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY-----   85 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence            4567778888888888999999999999998889      9999999999999999999999999999999 954     


Q ss_pred             HHHHHHHHHHhHhhHHHHHHhhcCC-chhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHH---HHHHHHHHH
Q 016338          272 LVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGI---ANSAGTLAA  346 (391)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~---~~~~~~~g~  346 (391)
                          ..+..+.++..++.+.....+ +.+......++.+...+...+....+..|..| ++|+++.+.   .+...++|.
T Consensus        86 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  161 (524)
T 2xut_A           86 ----NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS  161 (524)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence                445566666666666666666 66666655555555566667777888888777 788766555   889999999


Q ss_pred             HHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 016338          347 IISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  383 (391)
Q Consensus       347 ~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  383 (391)
                      .++|.+.+.+.+..| ++..|.+.++..+++.+....
T Consensus       162 ~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          162 FFASLSMPLLLKNFG-AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998887 899998888887777666544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.48  E-value=3.5e-13  Score=123.76  Aligned_cols=147  Identities=12%  Similarity=0.096  Sum_probs=124.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhHHH
Q 016338           16 SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMST   95 (391)
Q Consensus        16 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~~~   95 (391)
                      ..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++.+  ..++.+.+++..++.+++.+...+....
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS--FATSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT--TCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45568888888889999999999999999999999998888888776663  4478888888888888887777777889


Q ss_pred             HhhhhcCccchhhHHHH-HHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccCCC
Q 016338           96 LTSRWFPSHERASAIGI-CMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPC  164 (391)
Q Consensus        96 ~i~~~~~~~~rg~~~~~-~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~  164 (391)
                      +++|.+|++.|+.+.+. .+....+|..++|.+++.+.+..|++..|.+.+++.++..+..+...||+++
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            99999999999999998 5888899999999999999998899999999888888777766666665443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.36  E-value=1.5e-12  Score=117.76  Aligned_cols=167  Identities=10%  Similarity=-0.015  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhH
Q 016338          204 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  283 (391)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  283 (391)
                      ...+..+.............|.+.++ +|.|+.+.+...+...++..++.++.|++.||+|||+         .+..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~---------~~~~~~~   73 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP---------VILVGMS   73 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC---------CCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch---------hHHHHHH
Confidence            44556666667777777788877666 8999999999999999999999999999999999763         3334555


Q ss_pred             hhHHHHHHhhcCCchhHHHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccc
Q 016338          284 GPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS  362 (391)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~  362 (391)
                      ...+........++.+.......+.+...+...+....+..|..| ++|+++.+..+....+|..++|.+.+.+.+..| 
T Consensus        74 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-  152 (375)
T 2gfp_A           74 IFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-  152 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-
Confidence            555555555555566666665556566666667777788888776 899999999999999999999999999999887 


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 016338          363 FQAFLTVTAGLYFVTTIFW  381 (391)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~  381 (391)
                      ++..+.+.++..++..+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~  171 (375)
T 2gfp_A          153 WRACYLFLLVLCAGVTFSM  171 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888888887777666533

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.35  E-value=4.7e-11  Score=111.91  Aligned_cols=160  Identities=17%  Similarity=0.081  Sum_probs=122.5

Q ss_pred             hhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhc--cchHHHHHHH--H
Q 016338            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT--HSTASLLAVR--A   80 (391)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~~r--~   80 (391)
                      .|.+.++.+.+..+.........+...++.++.+.+.||+|||+.+..+.....++.+..+....  .+.+..++.-  +
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  379 (491)
T 4gc0_A          300 APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFY  379 (491)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            45677778888888888888888999999999999999999999999998888877766543321  1122222222  2


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHh------hcCchhHHHHHHHHHHHHHHH
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS------TIGISGPFILFSSLGLLWLST  154 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~------~~gwr~~f~~~~~~~~~~~~~  154 (391)
                      ..+.+.+ ..+....+.+|.+|.+.|++++++......++..+++.+.+.+.+      ..++...|++.++++++..+.
T Consensus       380 ~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  458 (491)
T 4gc0_A          380 VAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF  458 (491)
T ss_dssp             HHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            2233322 346778899999999999999999999999999999888766543      356777899999999998888


Q ss_pred             HhhccccCCCC
Q 016338          155 WTSKVTNDPCN  165 (391)
Q Consensus       155 ~~~~~~~~~~~  165 (391)
                      .+++.||++.+
T Consensus       459 ~~~~~PETkg~  469 (491)
T 4gc0_A          459 MWKFVPETKGK  469 (491)
T ss_dssp             HHHHCCCCTTC
T ss_pred             HHheecCCCCC
Confidence            88889987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	391
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	9e-20
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	9e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 88.2 bits (217), Expect = 9e-20
 Identities = 68/386 (17%), Positives = 135/386 (34%), Gaps = 13/386 (3%)

Query: 5   VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLT 64
            +P   + G+S   LG   S     Y FS  I G++ D+   +  L  G+ L +   L  
Sbjct: 47  AMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM 106

Query: 65  PW--AATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNV 122
            +   AT S A +  +    G  +G+  P        W+   ER   + +     ++G  
Sbjct: 107 GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 166

Query: 123 VGLLLTPIMLSTIGISGPFILFSS-----LGLLWLSTWTSKVTNDPCNSPFVSKSELRLI 177
           +  LL  + ++        +   +     + L   +       +         K++    
Sbjct: 167 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD 226

Query: 178 QAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
              K++         ++++L     W + IAN+      + +L W P Y   V +  L +
Sbjct: 227 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 286

Query: 238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
           ++W   +          + G  SD + +     T     +  +  +     +  +N A +
Sbjct: 287 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT----GVFFMTLVTIATIVYWMNPAGN 342

Query: 298 PAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGY 355
           P V  + + +   L         L+  E+AP   AG   G     G L  ++ ++   GY
Sbjct: 343 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 402

Query: 356 FVQWLGSFQAFLTVTAGLYFVTTIFW 381
            V + G    F+ +  G      +  
Sbjct: 403 TVDFFGWDGGFMVMIGGSILAVILLI 428

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 36/382 (9%), Positives = 91/382 (23%), Gaps = 12/382 (3%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
                + L      S S  GI+ ++     +    + G L DK G +K L W +    + 
Sbjct: 27  FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
                            +         +     +   +      + +       G   + 
Sbjct: 87  FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMF 146

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
             VG  L           G  I+     +     +          +  +  ++     + 
Sbjct: 147 GCVGWAL-----------GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195

Query: 181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
              +    N  +    L+        +  ++           +       F  +      
Sbjct: 196 TVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGE 255

Query: 241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
                +G +   G +   +         +    +  +   G I     +       +  V
Sbjct: 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEV 315

Query: 301 AAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANS-AGTLAAIISTIGTGYFVQW 359
             +       +       +     +     +  ++ +       LA I  ++  G   + 
Sbjct: 316 VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375

Query: 360 LGSFQAFLTVTAGLYFVTTIFW 381
           +G   A+L +       T I  
Sbjct: 376 IGFQGAYLVLGLVALGFTLISV 397

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	391
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.52
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.43

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.5e-40  Score=304.67  Aligned_cols=374  Identities=19%  Similarity=0.234  Sum_probs=288.2

Q ss_pred             cchhhHHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhh--hccchHHHHHHHH
Q 016338            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA--ATHSTASLLAVRA   80 (391)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~r~   80 (391)
                      .+.|.++ |+|+|.+|+|++.+++.+++.++++++|+++||+|||+++.++.++.+++.++++++  ..++++.+++.|+
T Consensus        46 ~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (447)
T d1pw4a_          46 LAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF  124 (447)
T ss_dssp             HHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHH
T ss_pred             HHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHH
Confidence            4456665 689999999999999999999999999999999999999999999999999888554  2358899999999


Q ss_pred             HHHhhhhchhhhHHHHhhhhcCccchhhHHHHHHhhhhhhHHHHhhHHHHHHhh-cCchhHHHHHHHHHHHHHHHHhhcc
Q 016338           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLSTWTSKV  159 (391)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~  159 (391)
                      +.|++.+...+...+++.|++|+|+|++++++.+.+..+|..+++.+++.+.+. .+||+.|++.+.+.++..++.+...
T Consensus       125 ~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  204 (447)
T d1pw4a_         125 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM  204 (447)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999998887665 4799999999999888888888888


Q ss_pred             ccCCCCCCCCChhHHHH----HHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCc
Q 016338          160 TNDPCNSPFVSKSELRL----IQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL  235 (391)
Q Consensus       160 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  235 (391)
                      +|+|++.+..+.++.+.    ..++..+++.+..+...++.+++|.++......++.....+....+.|.|+++.++.+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (447)
T d1pw4a_         205 RDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL  284 (447)
T ss_dssp             CCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCH
T ss_pred             ccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhccccccccc
Confidence            88776554332222111    11111112222333446778889999999999999999999999999999999999999


Q ss_pred             chhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhc--CCchhHHHHHHHHHHHhhh
Q 016338          236 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSS  313 (391)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  313 (391)
                      .+.+.......+...++.++.|++.||.++++      +....................  ..+.+......++.++...
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  358 (447)
T d1pw4a_         285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN------RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY  358 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC------HHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHT
T ss_pred             chhhhhhhcchhhhhhhhhhhhhhhhhccccc------cccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998763      222222333333333333322  2334444444444444444


Q ss_pred             hcccchhhhhhhccc-cchhHHHHHHHHHHHH-HHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 016338          314 FSQAGYLLNIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  384 (391)
Q Consensus       314 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  384 (391)
                      ...+.......|..| +.|+++.|+.+...++ |..++|.+.|.+.|+.| +...+.+..++.+++.++....
T Consensus       359 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         359 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            445556677777777 7899999999999887 55678999999999998 7777777776666666554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.5e-29  Score=229.70  Aligned_cols=365  Identities=15%  Similarity=0.055  Sum_probs=257.6

Q ss_pred             cchhh-HHHHhCCChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHH----HHH
Q 016338            3 VAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTAS----LLA   77 (391)
Q Consensus         3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~----~~~   77 (391)
                      +.+|. +++++|.|++|+|++.+++.+++.+++++.|+++||+||||++.++.....++..+..+.  ++...    .++
T Consensus        28 ~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  105 (417)
T d1pv7a_          28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF--IFGPLLQYNILV  105 (417)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH--THHHHHHTTCHH
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHH
Confidence            45565 677899999999999999999999999999999999999999999998888888777443  44433    345


Q ss_pred             HHHHHHhhhhchhhhHHHHhhhhcCc--cchhhHHHHHHhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Q 016338           78 VRAFFGLAEGVAMPAMSTLTSRWFPS--HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTW  155 (391)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  155 (391)
                      .+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+ .+|+..+........+..+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~  184 (417)
T d1pv7a_         106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLL  184 (417)
T ss_dssp             HHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc-ccccccccchhhHHHHHHHHH
Confidence            55555555555444444444443332  345667788888899999999999988876 456666666666666666666


Q ss_pred             hhccccCCCCCCCCChhHHHHHHcCCCcccccCCCccHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhHHHHHh---hhC
Q 016338          156 TSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNT---VFN  232 (391)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g  232 (391)
                      .+..+|+++++++.++++.         ++++.......+..+++..+....................+.+...   ..+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (417)
T d1pv7a_         185 FFAKTDAPSSATVANAVGA---------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGE  255 (417)
T ss_dssp             HSSCCCSCSSSCSSHHHHS---------CCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHH
T ss_pred             HHHhcccccchhhhhhhhh---------hcccccccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccc
Confidence            6666766655443222211         1112222334455566666555555555444444444444444333   233


Q ss_pred             CCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 016338          233 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS  312 (391)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (391)
                      .+....+.......++..++..+.+++.||.+         ++..+..+.....+........++.+.......+.+...
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  326 (417)
T d1pv7a_         256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIG---------GKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV  326 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHC---------HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccccccccccccchhhhhhhhcccc---------cccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHH
Confidence            44556677777888889999999999999998         445666777777777777778788777777666666666


Q ss_pred             hhcccchhhhhhhccc-cchhHHHHHHH-HHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHHHHHHhccCcc
Q 016338          313 SFSQAGYLLNIQEIAP-DCAGFLHGIAN-SAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER  389 (391)
Q Consensus       313 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~-~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (391)
                      +...+....+..|..| +.|+++.|... ....+|..++|.+.|.+.|+.| ++..+.+.+++.++..++..+..|+++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            6667777778888777 88999999864 5567899999999999999998 888888888887777776666555544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2.8e-14  Score=127.80  Aligned_cols=147  Identities=12%  Similarity=0.130  Sum_probs=130.5

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHhhhhhhhhcCchHHHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHhhhhchhhhH
Q 016338           14 WSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAM   93 (391)
Q Consensus        14 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~l~G~g~~~~~~~~   93 (391)
                      .+..+.+...+...++..++..+.+++.||+|+|+.+.++..+.+++.+..+  ..++.+.+++..++.|++.+...+..
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~  333 (417)
T d1pv7a_         256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS--FATSALEVVILKTLHMFEVPFLLVGC  333 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc--cccccchhhHHHHHHHHHHHHHHHHH
Confidence            3456678888889999999999999999999999999999999999988884  45999999999999999999999999


Q ss_pred             HHHhhhhcCccchhhHHHHH-HhhhhhhHHHHhhHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccccC
Q 016338           94 STLTSRWFPSHERASAIGIC-MGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (391)
Q Consensus        94 ~~~i~~~~~~~~rg~~~~~~-~~~~~lg~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~  162 (391)
                      .+++.|.+|+|+|++..++. +....+|..++|.+.|++.+.+||+..|++.+++.++..++..+..+++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999985 5567799999999999999999999999999988888777766665543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=1.7e-12  Score=117.70  Aligned_cols=152  Identities=14%  Similarity=0.104  Sum_probs=116.7

Q ss_pred             HHHHhhhCCCcchhhHHhhhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHhhHHHHHHhhcC----CchhH
Q 016338          225 IYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA----KSPAV  300 (391)
Q Consensus       225 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  300 (391)
                      ++++| +|+|..+.+++.+...++..++.++.|+++||+||         |..+..+.++..++.++....    ++...
T Consensus        49 p~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~---------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (447)
T d1pw4a_          49 PYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP---------RVFLPAGLILAAAVMLFMGFVPWATSSIAV  118 (447)
T ss_dssp             HHTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH---------HHHHHHHHHHHHHHHHHHHHCHHHHSSSSH
T ss_pred             HHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc---------hHHHHHHHHHHHHHHhhccccchhhhhHHH
Confidence            35666 79999999999999999999999999999999994         456666666666665555433    34455


Q ss_pred             HHHHHHHHHHhhhhcccchhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhHhhccccchhHHHHHHHHHHHHHHH
Q 016338          301 AAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTI  379 (391)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  379 (391)
                      ..+.-++.+...+...+....+..|..| ++|+++.|+.+....+|..++|.+.+.+.+..++++..+++.+...++..+
T Consensus       119 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  198 (447)
T d1pw4a_         119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL  198 (447)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHH
Confidence            5555555555556666777777778776 889999999999999999999999998888776688888877777766666


Q ss_pred             HHHHhcc
Q 016338          380 FWNLYST  386 (391)
Q Consensus       380 ~~~~~~~  386 (391)
                      +.+...+
T Consensus       199 ~~~~~~~  205 (447)
T d1pw4a_         199 FAFAMMR  205 (447)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhcc
Confidence            6555443