Citrus Sinensis ID: 016339
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 391 | 2.2.26 [Sep-21-2011] | |||||||
| Q3MG79 | 370 | Putative ribosome biogene | yes | no | 0.797 | 0.843 | 0.45 | 5e-74 | |
| Q8YUA3 | 370 | Putative ribosome biogene | yes | no | 0.790 | 0.835 | 0.448 | 1e-72 | |
| B0JW21 | 358 | Putative ribosome biogene | yes | no | 0.831 | 0.907 | 0.426 | 3e-72 | |
| P52640 | 369 | Putative ribosome biogene | N/A | no | 0.818 | 0.867 | 0.390 | 8e-63 | |
| Q8DK79 | 348 | Putative ribosome biogene | yes | no | 0.757 | 0.850 | 0.4 | 7e-59 | |
| Q7VEJ4 | 309 | Putative ribosome biogene | yes | no | 0.659 | 0.834 | 0.389 | 1e-49 | |
| Q0IE58 | 304 | Putative ribosome biogene | yes | no | 0.659 | 0.848 | 0.4 | 1e-47 | |
| Q3ANM7 | 304 | Putative ribosome biogene | yes | no | 0.657 | 0.845 | 0.404 | 4e-46 | |
| Q7UA74 | 299 | Putative ribosome biogene | yes | no | 0.659 | 0.862 | 0.392 | 2e-45 | |
| Q46I43 | 312 | Putative ribosome biogene | yes | no | 0.664 | 0.833 | 0.365 | 3e-44 |
| >sp|Q3MG79|RSGA_ANAVT Putative ribosome biogenesis GTPase RsgA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rsgA PE=3 SV=1 | Back alignment and function desciption |
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Score = 278 bits (711), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 153/340 (45%), Positives = 201/340 (59%), Gaps = 28/340 (8%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R LKKI ++V+VGD+VVV DW RG I V R T++ PP+AN D +LL+F+
Sbjct: 57 CTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIAEVLSRQTQLDRPPIANADQILLVFA 116
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P LEP+ L+RFLV+AE+TG+ + L LNK +LV E+ RL WGY+PLF SVE
Sbjct: 117 VADPPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVE 176
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ +D + + L ++ TV+ GPSGVGKSSLINAL D+
Sbjct: 177 KQINIDQIAKYLSNKITVVAGPSGVGKSSLINAL--------IPDI-------------- 214
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ RVGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE +E
Sbjct: 215 NLRVGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARE 273
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGD 325
L A C FN+CLH EP C V+GDWERY++Y + L + I + QL E
Sbjct: 274 RLAV---ASCRFNDCLHRDEPDCAVRGDWERYEHYLEFLADA-IARQTQLYQQADP-EST 328
Query: 326 VRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDE 365
++ K G Q EP+LE KK+RR SR+ Q + D E
Sbjct: 329 LKLKTKGKGQSQYEPKLESKKYRRTSRRTQVQGLQDLYQE 368
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: - |
| >sp|Q8YUA3|RSGA1_NOSS1 Putative ribosome biogenesis GTPase RsgA 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rsgA1 PE=3 SV=1 | Back alignment and function description |
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Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 201/337 (59%), Gaps = 28/337 (8%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R LKKI ++V+VGD+VVV DW RG I +V R T++ PP+AN D +LL+F++
Sbjct: 60 RTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIADVLSRQTQLDRPPIANADQILLVFAVAD 119
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
P LEP+ L+RFLV+AE+TG+ + L LNK +LV E+ RL WGY+PLF SVE+++
Sbjct: 120 PPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVENQI 179
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
+D + + L ++ TV+ GPSGVGKSSLINAL + N + R
Sbjct: 180 NIDQIAKYLSNKITVVAGPSGVGKSSLINAL-----------IPNI-----------NLR 217
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
VGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE +E L
Sbjct: 218 VGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARERLA 276
Query: 269 ANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRY 328
A C FN+C H EP C V+GDWERY++Y + L + I + QL E ++
Sbjct: 277 I---ASCRFNDCSHRDEPDCAVRGDWERYEHYLEFLADA-IARQTQLYQQADP-ESTLKL 331
Query: 329 KVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDE 365
K G Q EP+LE KK+RR SR+ Q + D E
Sbjct: 332 KTKGKGQSQYEPKLESKKYRRTSRRTQVQGLQDLYQE 368
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|B0JW21|RSGA_MICAN Putative ribosome biogenesis GTPase RsgA OS=Microcystis aeruginosa (strain NIES-843) GN=rsgA PE=3 SV=1 | Back alignment and function description |
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Score = 272 bits (695), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/354 (42%), Positives = 211/354 (59%), Gaps = 29/354 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFGDQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPDI-NCLPEELTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE++ L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+ +T +
Sbjct: 248 PEVRARLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--S 302
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI-LDELDELDDDDNDD 373
+E ++ K+ + G + EP+L KK+RR SR+ NQ E L D NDD
Sbjct: 303 TKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQDQERYENKTLQDIYNDD 356
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Microcystis aeruginosa (strain NIES-843) (taxid: 449447) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|P52640|RSGA_SYNY3 Putative ribosome biogenesis GTPase RsgA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 204/369 (55%), Gaps = 49/369 (13%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVV--------------GSIDWVDRR--GMIENVF 63
T LLC R LKK+ ++V+VGD+V V + V G I V+
Sbjct: 26 TSQPLLCTRRTRLKKVGQKVMVGDQVRVELPPSLLLHGRSNTAPVPMVAEGDLGAIAKVY 85
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
R T + PPVAN + + L+F++ P LE + L+RFLV+AE+TG+ ++L NK +LV E
Sbjct: 86 PRRTVLERPPVANAEQICLVFALTDPPLEEWQLSRFLVQAEATGLEISLCFNKQDLVQET 145
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ W RL WGY P+ SVE++ G++ L ++LR + +++ GPSGVGKSSLIN L
Sbjct: 146 DVKFWGDRLAAWGYAPIIISVENRWGVEKLQEKLRSRISLMAGPSGVGKSSLINLL---- 201
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+ G +Q+V VS K +G+HTTRHV L L GG LADTPGF
Sbjct: 202 --------------VPGV----EQQVKNVSGKLRKGRHTTRHVELFDLPHGGLLADTPGF 243
Query: 244 NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQL 303
NQP L V L FPE ++ L E C F +CLH GEP C V DWERY++Y
Sbjct: 244 NQPD-LAVEPAQLIHLFPEARQQLTGQE---CFFKDCLHRGEPDCAVGQDWERYEHYLTF 299
Query: 304 LDEIRIREEFQLRTFGTKREGD--VRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD 361
L+E+ ++ + RE D ++ K G G + EP+LE KK+RR SR++ +Q +
Sbjct: 300 LEEVLAQQNPE-----NSRETDTGLKTKTGSDGQEYDEPKLETKKYRRHSRRQEHQELQS 354
Query: 362 ELDELDDDD 370
++ D D+
Sbjct: 355 FCEQTDLDN 363
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q8DK79|RSGA_THEEB Putative ribosome biogenesis GTPase RsgA OS=Thermosynechococcus elongatus (strain BP-1) GN=rsgA PE=3 SV=1 | Back alignment and function description |
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Score = 228 bits (581), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 176/325 (54%), Gaps = 29/325 (8%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLCV RA LKK+ ++V VGD VVV DW +RG I + R ++ P +ANVD +LL
Sbjct: 29 ELLCVRRARLKKMGQQVCVGDWVVVSHPDWPGQRGAIAEILPRRNQLSRPAIANVDQILL 88
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
LF++ P + +TRFL+ AE + + + K +LV + W+ RL WGY
Sbjct: 89 LFALADPPADVHPITRFLLTAEGLNVEIQVVFTKADLVSPQEQQQWRDRLQQWGYRCHVL 148
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +L L ++ TV+ GPSGVGKSSLI L
Sbjct: 149 SLTQGIAWQALRPHLANKITVVCGPSGVGKSSLIRHLTPR-------------------- 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
ED RVG VS RG+HTTRHV L PL+ GG++ADTPGFNQP L +Q LA FPE
Sbjct: 189 --EDIRVGAVSDHWHRGRHTTRHVELFPLAEGGWIADTPGFNQPELPPDPRQ-LAAAFPE 245
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
I++ L ++ C F+NC H EPGC V+G+WERY Y + L ++ E +
Sbjct: 246 IRQRLSQDQ---CLFDNCRHDQEPGCCVRGNWERYPLYIEYLHQL---ETIASAEPSLAK 299
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKH 347
V+ K G Q+ EP L+ KK+
Sbjct: 300 VPLVKAKSDRQGQQRLEPLLDAKKY 324
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q7VEJ4|RSGA_PROMA Putative ribosome biogenesis GTPase RsgA OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/285 (38%), Positives = 157/285 (55%), Gaps = 27/285 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ L V VGD V++ +IDW G+I V R I PPVANV ++++
Sbjct: 46 LLCTKRSRLSYKGHSVSVGDFVLIEAIDWTAETGVISFVEPRKNLITRPPVANVTDVIIV 105
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
S+ P + ++RFL++AE TG+ +T+ L K +L+DE++L + +L TWGY+P+ S
Sbjct: 106 VSLLDPSFDLNQVSRFLMKAEETGLKVTIVLTKRDLIDEKILEKYDKKLQTWGYQPIPIS 165
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + G+ L RL+ + V+ GPSGVGKSSLIN L P S
Sbjct: 166 IVNGEGIQKLSARLKSMKLGVLCGPSGVGKSSLINYLL--PKISIP-------------- 209
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+G++S K RG+HTTRHV L + ++ADTPGFN+P Q + Q FPE
Sbjct: 210 ------IGKLSKKLKRGRHTTRHVELFSIYSDSFIADTPGFNKPEFYTEPSQ-VPQLFPE 262
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
++ L KC F NC+HL EP C + DWERY Y L E+
Sbjct: 263 LRSQLLIK---KCKFRNCMHLNEPDCAISRDWERYSNYKNFLQEM 304
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q0IE58|RSGA_SYNS3 Putative ribosome biogenesis GTPase RsgA OS=Synechococcus sp. (strain CC9311) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 157/285 (55%), Gaps = 27/285 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ +V R + + PPVAN +++
Sbjct: 36 LLCTRRTRLSHRGEAVYVGDRVRVEAIDVSHARAVVADVEPRVSFLTRPPVANASTVVVA 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE T + + L L K +L++ E L + RL WGY PL S
Sbjct: 96 LAVDQPAFDPDQASRFLLTAERTSLAVQLVLTKTDLLEPEALERLRVRLQAWGYPPLLVS 155
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S LGL L QRL + + +V+ GPSGVGKSSL+NAL P L
Sbjct: 156 TFSGLGLSELKQRLAESSLSVLCGPSGVGKSSLLNAL----------------IPEL--- 196
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D R+G VS + RG+HTTRHV L L +ADTPGFN+P L ++L FPE
Sbjct: 197 ---DLRIGSVSGRLQRGRHTTRHVELHHLGAKARVADTPGFNRPDLPD-DPRNLEVLFPE 252
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
++ L+ + C F +CLH EPGC V DWERY Y + ++++
Sbjct: 253 LRVQLEQH---PCRFRDCLHRDEPGCGVTRDWERYPIYRRAVEDL 294
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Synechococcus sp. (strain CC9311) (taxid: 64471) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q3ANM7|RSGA_SYNSC Putative ribosome biogenesis GTPase RsgA OS=Synechococcus sp. (strain CC9605) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 153/284 (53%), Gaps = 27/284 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ V R + + PPVANV + ++
Sbjct: 36 LLCTRRTRLSHRGEAVYVGDRVRVEAIDPGQGRAVVAEVEPRHSFLTRPPVANVSLVAVV 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
+++QP +P +RFL+ AE TG+ + L L K +L+ L +RL WGY+PL S
Sbjct: 96 LAVEQPSFDPDQASRFLLTAERTGLEVILLLTKTDLLSAAALERLVTRLQGWGYDPLAFS 155
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ G+D+L QRL Q +V+ GPSGVGKSSL+N L D+
Sbjct: 156 SAAGTGIDALRQRLAGAQLSVLCGPSGVGKSSLLNQL--------CPDL----------- 196
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
R VS + RG+HTTRHV L PL +ADTPGFN+P L + Q L FPE
Sbjct: 197 ---QLRTAAVSGRLQRGRHTTRHVELFPLGPSARVADTPGFNRPDLPE-DPQELGVLFPE 252
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDE 306
+++ L +P C F +CLH GEPGC V DWERY Y L E
Sbjct: 253 LRKQL---DPWPCRFRDCLHRGEPGCGVSTDWERYSLYEAALIE 293
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Synechococcus sp. (strain CC9605) (taxid: 110662) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q7UA74|RSGA_SYNPX Putative ribosome biogenesis GTPase RsgA OS=Synechococcus sp. (strain WH8102) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/285 (39%), Positives = 156/285 (54%), Gaps = 27/285 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID V R ++ V R + + P VANV +++
Sbjct: 31 LLCTRRTRLSHRGETVHVGDRVRVEAIDPVQARAVVSGVEPRCSWLTRPQVANVSLVVVA 90
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE TG+P+ L L K +L++E RL WGY+ L S
Sbjct: 91 LAVDQPAFDPDQASRFLLTAERTGLPVQLLLTKGDLMEEHQRFALVERLMGWGYDSLVVS 150
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
++ G++ L QRL+D + V+ GPSGVGKSS++N L PH +
Sbjct: 151 SQTGEGVEVLSQRLKDTELAVLCGPSGVGKSSVLNCL--MPHLA---------------- 192
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + RG+HTTRHV L P++ G +ADTPGFN+P L L FPE
Sbjct: 193 ----LRVGAVSGRLQRGRHTTRHVELFPIAPGSRVADTPGFNRPDLPD-DPSELGMLFPE 247
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
++ L P C F +CLH EPGC + +WER+++Y L E
Sbjct: 248 LRVQLS---PWPCRFRDCLHRQEPGCGINREWERFEFYKDALQEC 289
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Synechococcus sp. (strain WH8102) (taxid: 84588) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q46I43|RSGA_PROMT Putative ribosome biogenesis GTPase RsgA OS=Prochlorococcus marinus (strain NATL2A) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 156/287 (54%), Gaps = 27/287 (9%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ LLC+ R+ L + VGD V V SID+ ++R ++ +V R + + P VANV +
Sbjct: 42 IRLLCIRRSKLNYQGLFIDVGDIVCVESIDYKNKRAVVSDVEPRQSFLKRPAVANVTLVS 101
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
+ S D+P + +RFL+ AE I + L K++L+ + L + ++ +WGY+ +
Sbjct: 102 ICISADEPLFDMEQTSRFLLTAECANIEPLIILTKIDLITKNDLILYINKFKSWGYDCIP 161
Query: 142 CSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S+ + G+DSL++RLR + TV+ GPSGVGK+SLIN L + ++
Sbjct: 162 VSIHNSQGIDSLIERLRKTKLTVLAGPSGVGKTSLINHLIPTVSLPTSS----------- 210
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
VS K RG HTTRHV L + G LADTPGFN+P ++ A F
Sbjct: 211 -----------VSKKLKRGTHTTRHVELFAIGNGSLLADTPGFNRPEIV-CEPSDFAFLF 258
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
PE + L ++C F NCLH EPGCV+ D ERY +Y Q L+E+
Sbjct: 259 PEFRTQLSN---SQCKFRNCLHRDEPGCVIDKDLERYPFYRQNLEEM 302
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Prochlorococcus marinus (strain NATL2A) (taxid: 59920) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 391 | ||||||
| 255547744 | 500 | GTP binding protein, putative [Ricinus c | 0.994 | 0.778 | 0.803 | 1e-180 | |
| 449452897 | 504 | PREDICTED: putative ribosome biogenesis | 0.989 | 0.767 | 0.781 | 1e-179 | |
| 224137508 | 385 | predicted protein [Populus trichocarpa] | 0.976 | 0.992 | 0.778 | 1e-176 | |
| 356566415 | 473 | PREDICTED: putative ribosome biogenesis | 0.969 | 0.801 | 0.800 | 1e-173 | |
| 356540154 | 475 | PREDICTED: putative ribosome biogenesis | 0.900 | 0.741 | 0.830 | 1e-172 | |
| 357463041 | 471 | hypothetical protein MTR_3g085550 [Medic | 0.982 | 0.815 | 0.772 | 1e-172 | |
| 42563017 | 433 | Minichromosome maintenance (MCM2/3/5) pr | 0.984 | 0.889 | 0.748 | 1e-167 | |
| 225425472 | 491 | PREDICTED: putative ribosome biogenesis | 0.948 | 0.755 | 0.795 | 1e-165 | |
| 297841431 | 430 | EMB1688 [Arabidopsis lyrata subsp. lyrat | 0.984 | 0.895 | 0.753 | 1e-164 | |
| 297738426 | 400 | unnamed protein product [Vitis vinifera] | 0.948 | 0.927 | 0.795 | 1e-164 |
| >gi|255547744|ref|XP_002514929.1| GTP binding protein, putative [Ricinus communis] gi|223545980|gb|EEF47483.1| GTP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 319/397 (80%), Positives = 354/397 (89%), Gaps = 8/397 (2%)
Query: 1 MRVIVQQSEPSRTS------DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD 54
MRVI+Q PS + + + + GVELLCVVRA+LKKI+RRVLVGDKVVVGSIDWVD
Sbjct: 106 MRVIIQSLPPSSGTFLKSPEEEDSRIGVELLCVVRAVLKKIRRRVLVGDKVVVGSIDWVD 165
Query: 55 RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLAL 114
RRGMIENVFQRSTEILDPPVANVDHLL+LFSMDQPK+EPFALTRFLVEAESTGIPLTLAL
Sbjct: 166 RRGMIENVFQRSTEILDPPVANVDHLLVLFSMDQPKIEPFALTRFLVEAESTGIPLTLAL 225
Query: 115 NKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174
NK ELVDEE L WKSRL +WGYEPLFCSVESKLGLDSL LR+QTTVIVGPSGVGKSS
Sbjct: 226 NKSELVDEETLIAWKSRLRSWGYEPLFCSVESKLGLDSLAYILREQTTVIVGPSGVGKSS 285
Query: 175 LINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234
LINALR+ P A D A+ DNWF+P+LGSKWFE+QRVGEVST+SGRGKHTTR+VSLLPLS G
Sbjct: 286 LINALRNKPRACDVAENDNWFDPMLGSKWFEEQRVGEVSTRSGRGKHTTRNVSLLPLSAG 345
Query: 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294
GYLADTPGFNQPSLLKVTKQSLA+TFPEI++ML + PAKCSFN+CLHLGEPGC+V GDW
Sbjct: 346 GYLADTPGFNQPSLLKVTKQSLAETFPEIQKMLSSGGPAKCSFNDCLHLGEPGCIVNGDW 405
Query: 295 ERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKR 354
ERY +YFQLLDEIRIREEFQLRT+GTK+EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKR
Sbjct: 406 ERYSFYFQLLDEIRIREEFQLRTYGTKKEGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKR 465
Query: 355 INQSILDELDELDDDDNDDEIDLENDPIVRAIRNENQ 391
INQS + + DD+D+ +D ENDPI+RA++NENQ
Sbjct: 466 INQS--LLDELDELDDDDNLLDEENDPILRALKNENQ 500
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452897|ref|XP_004144195.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis sativus] gi|449489232|ref|XP_004158254.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust.
Identities = 318/407 (78%), Positives = 352/407 (86%), Gaps = 20/407 (4%)
Query: 1 MRVIVQQSEPSRTSDCND----------------KTGVELLCVVRALLKKIKRRVLVGDK 44
MRVIVQ + ND GVELLCVV+A+LKKIKRRVLVGDK
Sbjct: 102 MRVIVQTLPSQFSQSPNDDLERSGSLEDDSSKSSMLGVELLCVVKAVLKKIKRRVLVGDK 161
Query: 45 VVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
VVVGSIDWVDRRGMIENVFQRS+EILDPPVANVDHLL+LFSMDQP+LEPF LTRFLVEAE
Sbjct: 162 VVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSMDQPRLEPFTLTRFLVEAE 221
Query: 105 STGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVI 164
STGIPLTL LNK+ELVDEE L +WKSRL +WGY+PLFCSV++ GLDSL LRDQTTVI
Sbjct: 222 STGIPLTLGLNKLELVDEETLVSWKSRLRSWGYDPLFCSVQTGAGLDSLAFILRDQTTVI 281
Query: 165 VGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224
VGPSGVGKSSLINALR+S A+DA+D DNWF+PILGSKWFE+QRV EVST+SGRGKHTTR
Sbjct: 282 VGPSGVGKSSLINALRNSNRATDASDTDNWFDPILGSKWFEEQRVAEVSTRSGRGKHTTR 341
Query: 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284
HVSLLPLSGGGYLADTPGFNQPSL+K+TKQSLAQ FPEI++ML A+EPAKCSFN+CLHLG
Sbjct: 342 HVSLLPLSGGGYLADTPGFNQPSLMKITKQSLAQAFPEIQKMLHASEPAKCSFNDCLHLG 401
Query: 285 EPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEP 344
EPGCV+KGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVR KVG+MGV+QAEPRLE
Sbjct: 402 EPGCVIKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRIKVGEMGVKQAEPRLEL 461
Query: 345 KKHRRQSRKRINQSILDELDELDDDDNDDEIDLENDPIVRAIRNENQ 391
KKHRRQSRKR+NQSILDELDE D++ E +PI+RA++NENQ
Sbjct: 462 KKHRRQSRKRVNQSILDELDE----LEDEDDLEETNPILRAMKNENQ 504
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137508|ref|XP_002322575.1| predicted protein [Populus trichocarpa] gi|222867205|gb|EEF04336.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/392 (77%), Positives = 348/392 (88%), Gaps = 10/392 (2%)
Query: 1 MRVIVQQSEPSRTSDCND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM 58
MRVIV PSR+ + D K G ELLCVVRA+LKKIKRRVLVGDKVVVGSIDWVDRRGM
Sbjct: 1 MRVIVTAG-PSRSREIEDSSKNGSELLCVVRAVLKKIKRRVLVGDKVVVGSIDWVDRRGM 59
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
IENVFQRS+EILDPPVANVDHLL+LFS++QP+L+ F LTRFL+EAESTGIP+TLALNKVE
Sbjct: 60 IENVFQRSSEILDPPVANVDHLLVLFSLEQPRLDSFVLTRFLIEAESTGIPITLALNKVE 119
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
LVD+EVL+ W SRL +WGYEPLFCSV+SK+GLD+L LRDQTTVI+GPSGVGKSSLINA
Sbjct: 120 LVDQEVLSDWNSRLRSWGYEPLFCSVDSKMGLDTLASVLRDQTTVILGPSGVGKSSLINA 179
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
LR+ P++ D AD NWF+PI+GSKWFEDQRVGEVST++GRGKHTTR+VSLLPL GGGY+A
Sbjct: 180 LRNKPNSHDEAD--NWFDPIMGSKWFEDQRVGEVSTRNGRGKHTTRNVSLLPLGGGGYVA 237
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQ 298
DTPGF+QPSLLKVTKQSLAQ FPEI+ +L NEPAKC+F +CLH+GEPGC+VKGDWERY
Sbjct: 238 DTPGFSQPSLLKVTKQSLAQYFPEIRTVLSVNEPAKCTFKDCLHVGEPGCIVKGDWERYP 297
Query: 299 YYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQS 358
YFQLLDEI+IREEFQLRTFGTKRE +VRYK GDMGVQQ EPRLEPKKHRRQSRKRINQS
Sbjct: 298 LYFQLLDEIKIREEFQLRTFGTKREDNVRYKAGDMGVQQEEPRLEPKKHRRQSRKRINQS 357
Query: 359 ILDELDELDDDDNDDEIDLENDPIVRAIRNEN 390
ILDEL+EL +D+ DL +DP++RA +N N
Sbjct: 358 ILDELNELANDE-----DLFDDPVLRAHKNGN 384
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566415|ref|XP_003551427.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 313/391 (80%), Positives = 349/391 (89%), Gaps = 12/391 (3%)
Query: 1 MRVIVQQS-EPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIV ++ EPS GVE+LCVVRALLKKIKRRV+VGDKV+VGSIDWVDRRGMI
Sbjct: 93 MRVIVPENDEPS-----GSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMI 147
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVF R++EILDPPVANVD LL+LFS++QPK EPF LTRFLVEAESTGIPLTLALNK EL
Sbjct: 148 ENVFHRTSEILDPPVANVDQLLVLFSLEQPKPEPFTLTRFLVEAESTGIPLTLALNKTEL 207
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD E++++WK+RL +WGYEP+FCSVES GLD L +LRDQTTVIVGPSGVGKSSLINAL
Sbjct: 208 VDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGFKLRDQTTVIVGPSGVGKSSLINAL 267
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P S+AA+ +NWFEP+LGSKW EDQRVGEVST+SGRGKHTTRHVSLLPLS GG+LAD
Sbjct: 268 RSNP--SNAAEGENWFEPVLGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLAD 325
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQY 299
TPGFNQPSLLKVTKQSLAQTFPEI++ML A+E KCSFNNCLHLGEPGC+VKGDWERY Y
Sbjct: 326 TPGFNQPSLLKVTKQSLAQTFPEIRKMLSASEIEKCSFNNCLHLGEPGCIVKGDWERYSY 385
Query: 300 YFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
YFQLLDEIRIREEFQLRTFGTKREGDVR K+GDMGVQQAEPRLEPKKHRRQSRKRINQSI
Sbjct: 386 YFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSI 445
Query: 360 LDELDELDDDDNDDEIDLENDPIVRAIRNEN 390
+ DDD+D+ +D ENDPI+RA+RNEN
Sbjct: 446 ----LDELDDDDDNLLDEENDPILRALRNEN 472
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540154|ref|XP_003538555.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/360 (83%), Positives = 325/360 (90%), Gaps = 8/360 (2%)
Query: 1 MRVIVQQS-EPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIV ++ EPS GVE+LCVVRALLKKIKRRV+VGDKV+VGSIDWVDRRGMI
Sbjct: 97 MRVIVPENDEPS-----GSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMI 151
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVFQR++EILDPPVANVD LL+LFS++ PK EPF LTRFLVEAESTGIPL LALNK EL
Sbjct: 152 ENVFQRTSEILDPPVANVDQLLVLFSLEHPKPEPFTLTRFLVEAESTGIPLMLALNKTEL 211
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD E++++WK+RL +WGYEP+FCSVES GLD L +LRDQTTVIVGPSGVGKSSLINAL
Sbjct: 212 VDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGYKLRDQTTVIVGPSGVGKSSLINAL 271
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P SDAA+ DNWFEPILGSKW EDQRVGEVST+SGRGKHTTRHVSLLPLS GG+LAD
Sbjct: 272 RSNP--SDAAEGDNWFEPILGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLAD 329
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQY 299
TPGFNQPSLLKVTKQSLAQTFPEI++ML ANE KCSFNNCLHLGEPGC+VKGDWERY Y
Sbjct: 330 TPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCIVKGDWERYSY 389
Query: 300 YFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
YFQLLDEIRIREEFQLRTFGTKREGDVR K+GDMGVQQAEPRLEPKKHRRQSRK INQSI
Sbjct: 390 YFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKSINQSI 449
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463041|ref|XP_003601802.1| hypothetical protein MTR_3g085550 [Medicago truncatula] gi|355490850|gb|AES72053.1| hypothetical protein MTR_3g085550 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 302/391 (77%), Positives = 341/391 (87%), Gaps = 7/391 (1%)
Query: 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIVQ S+PS T D + + G ELLCVVRALLKKIKRRV+VGDKV+VGS+DWVDRR MI
Sbjct: 86 MRVIVQ-SQPSGTFQDASSRGGAELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRAMI 144
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVFQR++E+LDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAESTGIPLTLALNK EL
Sbjct: 145 ENVFQRNSEMLDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTGIPLTLALNKTEL 204
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD+E +++WK+R WGY+P+FCSVES +D L +LRDQTTV+VGPSGVGKSSLINAL
Sbjct: 205 VDKETMDSWKARFRGWGYQPIFCSVESGHNIDLLAFQLRDQTTVVVGPSGVGKSSLINAL 264
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P D AD +NWFEPILGSKW++DQRV EVST+SGRGKHTTRHVSLLPLSGGGYLAD
Sbjct: 265 RSNPRTCDTADGENWFEPILGSKWYDDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLAD 324
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQY 299
TPGFNQPSLLKVTKQSLAQTFPEI++ML NE KCSFNNCLHLGEPGC+VKGDWERY +
Sbjct: 325 TPGFNQPSLLKVTKQSLAQTFPEIRKMLSGNESTKCSFNNCLHLGEPGCIVKGDWERYSF 384
Query: 300 YFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
YFQLLDEIRIREEFQLRTFGTKRE DVR + G+MG QQAEPRL KKHRRQSRK+ NQSI
Sbjct: 385 YFQLLDEIRIREEFQLRTFGTKRESDVRLRTGNMGSQQAEPRLVLKKHRRQSRKKTNQSI 444
Query: 360 LDELDELDDDDNDDEIDLENDPIVRAIRNEN 390
D DD+D+ +D ENDP++ A+RNEN
Sbjct: 445 -----LDDLDDDDNLLDEENDPLLNALRNEN 470
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42563017|ref|NP_176911.2| Minichromosome maintenance (MCM2/3/5) protein [Arabidopsis thaliana] gi|66792692|gb|AAY56448.1| At1g67440 [Arabidopsis thaliana] gi|332196525|gb|AEE34646.1| Minichromosome maintenance (MCM2/3/5) protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 295/394 (74%), Positives = 334/394 (84%), Gaps = 9/394 (2%)
Query: 1 MRVIVQQSEPSRTSDCND---KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ++ KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
LRS+ H + +NWFEP+LG+KWF+DQRVGEVS++SGRGKHTTR+VSLLP+S GGYL
Sbjct: 224 VLRSN-HGGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYL 282
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERY 297
ADTPGFNQPSLLKVTK SLA FPEI+ M+ E KC F +CLH+GEPGCVVKGDWERY
Sbjct: 283 ADTPGFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERY 339
Query: 298 QYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ 357
YY QLLDEIRIREEFQLRTFGTKRE DVRYKVGDMGV+ AEPRL PKKHRR+SRK+ Q
Sbjct: 340 PYYLQLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQ 399
Query: 358 SILDELDELDDDDNDDEIDLENDPIVRAIRNENQ 391
+++ ELDE +D+D+D + +ENDPIV+AI NEN+
Sbjct: 400 TMISELDEFEDEDSD--LYIENDPIVQAIENENK 431
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425472|ref|XP_002279434.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 299/376 (79%), Positives = 334/376 (88%), Gaps = 5/376 (1%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GVELLCVVRA+LKKIKRRVLVGDKV+VGSIDWVDRRG+IENVF R +EILDPPVANVD
Sbjct: 118 RVGVELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVD 177
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
HLL+LF+M+QPKLE ++LTRFLVEAESTGIP+TLALNK ELVDEE WKSRL +WGY
Sbjct: 178 HLLVLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYG 237
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS-PHASDAADVDNWFEP 197
P+FCSVESK GLD+L LR+QTTVIVGPSGVGKSSLINALRS+ P + +++ +NWF+
Sbjct: 238 PVFCSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALRSNHPLINVSSEENNWFDS 297
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
ILGSK E+QRVGEVS +SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT QSLA
Sbjct: 298 ILGSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLA 357
Query: 258 QTFPEIKEML--KANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQL 315
QTFPEI+++L ANEP KCSFN+CLHLGEPGCVVKGDWERY YYFQLLDEI+IREEFQL
Sbjct: 358 QTFPEIRKLLSGSANEPEKCSFNDCLHLGEPGCVVKGDWERYPYYFQLLDEIKIREEFQL 417
Query: 316 RTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDDNDDEI 375
RT GTKREGDVRYK GDMGV+QAEPRLEPKKHRRQSRKR+NQSILDELD+LDDDD+ +
Sbjct: 418 RTLGTKREGDVRYKTGDMGVKQAEPRLEPKKHRRQSRKRMNQSILDELDDLDDDDSLLDA 477
Query: 376 DLENDPIVRAIRNENQ 391
E D I+ I NENQ
Sbjct: 478 --EGDSILNEIGNENQ 491
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841431|ref|XP_002888597.1| EMB1688 [Arabidopsis lyrata subsp. lyrata] gi|297334438|gb|EFH64856.1| EMB1688 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 296/393 (75%), Positives = 336/393 (85%), Gaps = 8/393 (2%)
Query: 1 MRVIVQQSEPSRTS--DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM 58
MRVIVQ S S D + KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRGM
Sbjct: 44 MRVIVQDVASSVKSGDDDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRGM 103
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
IENVF R +EILDPPVANVDHLL+LFS+DQPKLE F LTRFLVEAEST IPLTLALNK E
Sbjct: 104 IENVFHRRSEILDPPVANVDHLLVLFSLDQPKLELFTLTRFLVEAESTRIPLTLALNKTE 163
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
L+ EE L +WK RL W YEPLFCSV +K GLD++ LR+QT+VIVGPSGVGKSSLIN
Sbjct: 164 LISEEELESWKIRLRGWNYEPLFCSVGTKDGLDAIAFVLRNQTSVIVGPSGVGKSSLINI 223
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
LRS+ H S A + +NWFEP+LG+KWF+DQRVGEVST+SGRGKHTTR+VSLLP+S GGYLA
Sbjct: 224 LRSN-HGSGAVEDENWFEPMLGNKWFDDQRVGEVSTRSGRGKHTTRNVSLLPISEGGYLA 282
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQ 298
DTPGFNQPSLLKVTKQSLA FPEI+ M+ E KC F +CLH+GEPGCVVKGDWERY
Sbjct: 283 DTPGFNQPSLLKVTKQSLAHCFPEIRNMI---EGEKCGFRDCLHIGEPGCVVKGDWERYP 339
Query: 299 YYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQS 358
YY QLLDEIRIREEFQLRTFGTKRE DVRYKVGDMGV+ AEPRL PKKHRR+SRK+ Q+
Sbjct: 340 YYLQLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQT 399
Query: 359 ILDELDELDDDDNDDEIDLENDPIVRAIRNENQ 391
++ ELDE +D+D+D +D+ENDPI+RAI NEN+
Sbjct: 400 MISELDEFEDEDSD--LDIENDPIIRAIENENK 430
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738426|emb|CBI27627.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 299/376 (79%), Positives = 334/376 (88%), Gaps = 5/376 (1%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GVELLCVVRA+LKKIKRRVLVGDKV+VGSIDWVDRRG+IENVF R +EILDPPVANVD
Sbjct: 27 RVGVELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVD 86
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
HLL+LF+M+QPKLE ++LTRFLVEAESTGIP+TLALNK ELVDEE WKSRL +WGY
Sbjct: 87 HLLVLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYG 146
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS-PHASDAADVDNWFEP 197
P+FCSVESK GLD+L LR+QTTVIVGPSGVGKSSLINALRS+ P + +++ +NWF+
Sbjct: 147 PVFCSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALRSNHPLINVSSEENNWFDS 206
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
ILGSK E+QRVGEVS +SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT QSLA
Sbjct: 207 ILGSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLA 266
Query: 258 QTFPEIKEML--KANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQL 315
QTFPEI+++L ANEP KCSFN+CLHLGEPGCVVKGDWERY YYFQLLDEI+IREEFQL
Sbjct: 267 QTFPEIRKLLSGSANEPEKCSFNDCLHLGEPGCVVKGDWERYPYYFQLLDEIKIREEFQL 326
Query: 316 RTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDDNDDEI 375
RT GTKREGDVRYK GDMGV+QAEPRLEPKKHRRQSRKR+NQSILDELD+LDDDD+ +
Sbjct: 327 RTLGTKREGDVRYKTGDMGVKQAEPRLEPKKHRRQSRKRMNQSILDELDDLDDDDSLLDA 386
Query: 376 DLENDPIVRAIRNENQ 391
E D I+ I NENQ
Sbjct: 387 --EGDSILNEIGNENQ 400
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 391 | ||||||
| TAIR|locus:2197618 | 433 | emb1688 "embryo defective 1688 | 0.984 | 0.889 | 0.728 | 8.1e-147 | |
| UNIPROTKB|A8IGD6 | 308 | CHLREDRAFT_49443 "Predicted pr | 0.411 | 0.522 | 0.472 | 2e-65 | |
| UNIPROTKB|Q81WH7 | 293 | rsgA "Putative ribosome biogen | 0.391 | 0.522 | 0.373 | 5.7e-41 | |
| TIGR_CMR|BA_3999 | 293 | BA_3999 "conserved hypothetica | 0.391 | 0.522 | 0.373 | 5.7e-41 | |
| UNIPROTKB|Q3AC25 | 290 | rsgA "Putative ribosome biogen | 0.396 | 0.534 | 0.329 | 2.1e-36 | |
| TIGR_CMR|CHY_1477 | 290 | CHY_1477 "GTP-binding protein" | 0.396 | 0.534 | 0.329 | 2.1e-36 | |
| UNIPROTKB|Q9X242 | 295 | rsgA "Putative ribosome biogen | 0.411 | 0.545 | 0.309 | 1e-31 | |
| UNIPROTKB|Q71YJ7 | 291 | rsgA1 "Putative ribosome bioge | 0.250 | 0.336 | 0.387 | 1.7e-29 | |
| TIGR_CMR|VC_0340 | 387 | VC_0340 "ribosome small subuni | 0.406 | 0.410 | 0.341 | 7e-24 | |
| UNIPROTKB|Q8EJ79 | 354 | rsgA "Putative ribosome biogen | 0.383 | 0.423 | 0.329 | 9e-23 |
| TAIR|locus:2197618 emb1688 "embryo defective 1688" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1434 (509.9 bits), Expect = 8.1e-147, P = 8.1e-147
Identities = 287/394 (72%), Positives = 317/394 (80%)
Query: 1 MRVIVQQSEPSRTSDC-ND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ND KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
LRS+ H + +NWFEP+LG+KWF+DQRVGEVS++SGRGKHTTR+VSLLP+S GGYL
Sbjct: 224 VLRSN-HGGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYL 282
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERY 297
ADTPGFNQPSLLKVTK SLA FPEI+ M+ E KC F +CLH+GEPGCVVKGDWERY
Sbjct: 283 ADTPGFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERY 339
Query: 298 QYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ 357
YY QLLDEIRIREEFQLRTFGTKRE DVRYKVGDMGV+ AEPRL PKKHRR+SRK+ Q
Sbjct: 340 PYYLQLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQ 399
Query: 358 SXXXXXXXXXXXXXXXXXXXXXXPIVRAIRNENQ 391
+ PIV+AI NEN+
Sbjct: 400 TMISELDEFEDEDSDLYIEND--PIVQAIENENK 431
|
|
| UNIPROTKB|A8IGD6 CHLREDRAFT_49443 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
Identities = 78/165 (47%), Positives = 108/165 (65%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC +R+LL+K+++ V+VGD V V ++DWV RG + V RS+ + DP VANV+H LL+
Sbjct: 2 LLCSLRSLLRKLRQDVVVGDVVRVEAVDWVAGRGAVSEVLPRSSRLTDPAVANVEHALLV 61
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL-HTWGYEPLFC 142
F++D P E ++RFLV E+ G+ +L LNK +LV EVL RL WGYEP+
Sbjct: 62 FALDTPPFEEQQVSRFLVAYEAAGVSFSLVLNKADLVAPEVL---AGRLAQAWGYEPVVL 118
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASD 187
S E+ G++ + RL D+ +V+ GPSG GKSSLIN LR H D
Sbjct: 119 SCETGEGVEQVAARLSDRVSVVAGPSGAGKSSLINLLRRGRHRPD 163
|
|
| UNIPROTKB|Q81WH7 rsgA "Putative ribosome biogenesis GTPase RsgA" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 5.7e-41, Sum P(2) = 5.7e-41
Identities = 59/158 (37%), Positives = 90/158 (56%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
S+ + +D L L +V+ G SGVGKSS++N LR
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR 180
|
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| TIGR_CMR|BA_3999 BA_3999 "conserved hypothetical protein TIGR00157" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 5.7e-41, Sum P(2) = 5.7e-41
Identities = 59/158 (37%), Positives = 90/158 (56%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
S+ + +D L L +V+ G SGVGKSS++N LR
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR 180
|
|
| UNIPROTKB|Q3AC25 rsgA "Putative ribosome biogenesis GTPase RsgA" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 54/164 (32%), Positives = 88/164 (53%)
Query: 20 TGVEL-LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
TG + +C R KK ++L GD+V++ + + G+IE++ R E++ PP+ANVD
Sbjct: 17 TGKAIYMCKARGKFKKDNIKILTGDRVIIRELV-PNSEGVIESLLPRKNELIRPPIANVD 75
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTW 135
+LL+F+ P + R LV A + + + L NK +LV+ E + +K L
Sbjct: 76 QVLLVFAFADPFPSTELIDRLLVMAYALRLEVVLVFNKFDLVNPESQKLFEYYKKILP-- 133
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ + + G+D L L + +V+ GPSGVGKS+LIN L
Sbjct: 134 --KVVAITARGDTGIDELTDYLNQKISVLAGPSGVGKSTLINRL 175
|
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| TIGR_CMR|CHY_1477 CHY_1477 "GTP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 54/164 (32%), Positives = 88/164 (53%)
Query: 20 TGVEL-LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
TG + +C R KK ++L GD+V++ + + G+IE++ R E++ PP+ANVD
Sbjct: 17 TGKAIYMCKARGKFKKDNIKILTGDRVIIRELV-PNSEGVIESLLPRKNELIRPPIANVD 75
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTW 135
+LL+F+ P + R LV A + + + L NK +LV+ E + +K L
Sbjct: 76 QVLLVFAFADPFPSTELIDRLLVMAYALRLEVVLVFNKFDLVNPESQKLFEYYKKILP-- 133
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ + + G+D L L + +V+ GPSGVGKS+LIN L
Sbjct: 134 --KVVAITARGDTGIDELTDYLNQKISVLAGPSGVGKSTLINRL 175
|
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| UNIPROTKB|Q9X242 rsgA "Putative ribosome biogenesis GTPase RsgA" [Thermotoga maritima MSB8 (taxid:243274)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 51/165 (30%), Positives = 93/165 (56%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++TG +LC +R + ++ VGD+V + G+IENV R + P VAN
Sbjct: 21 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVAN 78
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
VD ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L + +
Sbjct: 79 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 138
Query: 136 GYEPLF-CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
G P+ S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 139 GLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 183
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| UNIPROTKB|Q71YJ7 rsgA1 "Putative ribosome biogenesis GTPase RsgA 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEML 267
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE+++
Sbjct: 184 KTAEISNALGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPEMEDRR 242
Query: 268 KANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
C F C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 243 SG-----CKFRGCMHDNEPNCAVKTAVEANEIAEFRYKHYIQILQELKNRK 288
|
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| TIGR_CMR|VC_0340 VC_0340 "ribosome small subunit-dependent GTPase A" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 57/167 (34%), Positives = 93/167 (55%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ +TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYSTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNAL 226
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| UNIPROTKB|Q8EJ79 rsgA "Putative ribosome biogenesis GTPase RsgA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 9.0e-23, Sum P(2) = 9.0e-23
Identities = 56/170 (32%), Positives = 93/170 (54%)
Query: 27 VVRALLKKIKRRVLVGDKVVVG-SIDWVDRRGM---IENVFQRSTEILDPPV-------- 74
+VR +++ ++ GDKV+V +I+ G+ +E V R + + P +
Sbjct: 65 IVRCNIRRTITSLVTGDKVIVRLAIESQANSGIAGIVEAVHPRHSSLSRPDLYDGVKIIA 124
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
+N+D +L++ S+ P + R+LV AE T IP + LNK++L+ E + L
Sbjct: 125 SNIDQILIVSSV-LPSFTTQIIDRYLVAAEDTDIPPIIILNKIDLLTPEEAPAIEEALKR 183
Query: 135 W---GYEPLFCSVESKLG--LDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ GY P++ V SKLG L+++ L+D+ +V G SGVGKSSL+NAL
Sbjct: 184 YQDIGY-PVY-KVSSKLGEGLETIKALLKDKVSVFAGQSGVGKSSLVNAL 231
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B0JW21 | RSGA_MICAN | 3, ., 6, ., 1, ., - | 0.4265 | 0.8312 | 0.9078 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_XVI000161 | hypothetical protein (385 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_fgenesh4_pg.C_LG_I2289 | SubName- Full=Putative uncharacterized protein; (226 aa) | • | 0.471 | |||||||
 | estExt_Genewise1_v1.C_1290095 | ribulose-phosphate 3-epimerase (EC-5.1.3.1) (286 aa) | • | 0.466 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 391 | |||
| PRK12289 | 352 | PRK12289, PRK12289, GTPase RsgA; Reviewed | 1e-128 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 2e-83 | |
| COG1162 | 301 | COG1162, COG1162, Predicted GTPases [General funct | 1e-79 | |
| PRK00098 | 298 | PRK00098, PRK00098, GTPase RsgA; Reviewed | 1e-76 | |
| TIGR00157 | 245 | TIGR00157, TIGR00157, ribosome small subunit-depen | 1e-68 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 3e-67 | |
| PRK12288 | 347 | PRK12288, PRK12288, GTPase RsgA; Reviewed | 1e-41 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 5e-28 | |
| cd01859 | 157 | cd01859, MJ1464, An uncharacterized, circularly pe | 1e-12 | |
| cd01849 | 146 | cd01849, YlqF_related_GTPase, Circularly permuted | 5e-09 | |
| cd01857 | 140 | cd01857, HSR1_MMR1, A circularly permuted subfamil | 2e-07 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 1e-06 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 1e-06 | |
| TIGR03597 | 360 | TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase | 5e-06 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 8e-06 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-05 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 4e-05 | |
| PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 8e-05 | |
| cd00880 | 161 | cd00880, Era_like, E | 2e-04 | |
| cd01858 | 157 | cd01858, NGP_1, A novel nucleolar GTP-binding prot | 2e-04 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-04 | |
| TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi | 4e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-04 | |
| cd00880 | 161 | cd00880, Era_like, E | 8e-04 | |
| PRK00300 | 205 | PRK00300, gmk, guanylate kinase; Provisional | 0.001 | |
| cd04178 | 171 | cd04178, Nucleostemin_like, A circularly permuted | 0.001 | |
| cd00071 | 137 | cd00071, GMPK, Guanosine monophosphate kinase (GMP | 0.003 | |
| pfam13555 | 60 | pfam13555, AAA_29, P-loop containing region of AAA | 0.003 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 0.004 |
| >gnl|CDD|237040 PRK12289, PRK12289, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 372 bits (956), Expect = e-128
Identities = 157/343 (45%), Positives = 215/343 (62%), Gaps = 29/343 (8%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
LLC R LKKI ++V+VGD+V+V DW +RG I V R TE+ PPVAN D +LL
Sbjct: 36 LLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELDRPPVANADQILL 95
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++ +P L+P+ L+RFLV+AESTG+ + L LNK +LV W+ RL WGY+PLF
Sbjct: 96 VFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFI 155
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SVE+ +GL++LL++LR++ TV+ GPSGVGKSSLIN L
Sbjct: 156 SVETGIGLEALLEQLRNKITVVAGPSGVGKSSLINRLIPD-------------------- 195
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ RVG+VS K GRG+HTTRHV L L GG LADTPGFNQP L + + LA FPE
Sbjct: 196 --VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPD-LDCSPRELAHYFPE 252
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
++ L C FN+CLH EP C V+GDWERY++Y + L+E ++E ++
Sbjct: 253 ARQRLAQ---GNCQFNDCLHRDEPNCAVRGDWERYEHYLEFLEEAIAQQEQLQQS--ADE 307
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDE 365
E ++ K+ G ++ EP+LE KK+RR SR++ +Q L +L E
Sbjct: 308 ESTLKLKIKASGQERYEPKLESKKYRRPSRRQQHQD-LQDLYE 349
|
Length = 352 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 252 bits (647), Expect = 2e-83
Identities = 94/238 (39%), Positives = 129/238 (54%), Gaps = 34/238 (14%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
ANVD +L++FS+ +P L R+LV AE++GI + LNK +LVD+E L
Sbjct: 1 ANVDQVLIVFSLKEPFFNLRLLDRYLVAAEASGIEPVIVLNKADLVDDEELEELLEIYEK 60
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY L S ++ GLD L + L+ +T+V+VG SGVGKS+L+NAL P
Sbjct: 61 LGYPVLAVSAKTGEGLDELRELLKGKTSVLVGQSGVGKSTLLNAL--LPE---------- 108
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
GE+S K GRG+HTT H L PL GGG + DTPGF + LL + +
Sbjct: 109 ----------LVLATGEISEKLGRGRHTTTHRELFPLPGGGLIIDTPGFRELGLLHIDPE 158
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
LA+ FPE +E+ +C F +C H+ EPGC VK E RY+ Y +LL+
Sbjct: 159 ELAEYFPEFEELA-----GQCRFRDCTHINEPGCAVKAAVEAGEISEERYESYLKLLE 211
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 1e-79
Identities = 107/295 (36%), Positives = 151/295 (51%), Gaps = 39/295 (13%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
C R L+K + +VGD+VV + G+IE + R ++ PPVAN D ++
Sbjct: 29 VYRCRARGNLRKKDLKPVVGDRVVFEDENN---NGVIEKILPRKNVLIRPPVANNDQAII 85
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSR--LHTWGYEPL 140
+ S+ P L R+LV AE+ GI + LNK++L+D+E + GY L
Sbjct: 86 VVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL 145
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F S ++ GL+ L + L + TV++G SGVGKS+LINAL
Sbjct: 146 FVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALLPE------------------ 187
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+Q+ GE+S K GRG+HTT HV L PL GGG++ DTPGF L + + L Q F
Sbjct: 188 ----LNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAF 243
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
PE E+ + +C F +C H EPGC VK E RY+ Y +LLDE+
Sbjct: 244 PEFAELAR-----QCKFRDCTHTHEPGCAVKAAVEEGEIAPERYENYLKLLDELS 293
|
Length = 301 |
| >gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 238 bits (611), Expect = 1e-76
Identities = 110/310 (35%), Positives = 148/310 (47%), Gaps = 48/310 (15%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----- 74
G C R +K VGD+V S + D G+I + +R ++ PP+
Sbjct: 19 DGQVYQCRARGKFRKKTNTPAVGDRVEF-SAENNDE-GVILEIHERKNLLVRPPIFKSKL 76
Query: 75 --ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL 132
ANVD +L+F+ +P L RFLV AE+ GI + LNK++L+D+ L + L
Sbjct: 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD--LEEARELL 134
Query: 133 HTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
+ GY+ L S + GLD L L + TV+ G SGVGKS+L+NAL P
Sbjct: 135 ALYRAIGYDVLELSAKEGEGLDELKPLLAGKVTVLAGQSGVGKSTLLNALA--PDL---- 188
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
+ + GE+S GRGKHTT HV L L GGG L DTPGF+ L
Sbjct: 189 ----------------ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLH 232
Query: 250 KVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQ 302
+ + L FPE + + C F NC HL EPGC VK RY+ Y Q
Sbjct: 233 DLEAEELEHYFPEFRPLS-----GDCKFRNCTHLHEPGCAVKAAVEEGEIAPSRYESYLQ 287
Query: 303 LLDEIRIREE 312
+L+EI R E
Sbjct: 288 ILEEIENRRE 297
|
Length = 298 |
| >gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 1e-68
Identities = 91/262 (34%), Positives = 135/262 (51%), Gaps = 31/262 (11%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98
++VGD+VV + + +R E+ P VAN+D ++++ S P+L L R
Sbjct: 1 LVVGDRVVWE--PGNPVKVYGGAIAERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR 58
Query: 99 FLVEAESTGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRL 157
FLV AE+ I + LNK++L+D+E + GY+ L S +++ GL L++ L
Sbjct: 59 FLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEAL 118
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
+++ +V G SGVGKSSLINAL S Q+V ++S+K G
Sbjct: 119 QNRISVFAGQSGVGKSSLINALDPSVK----------------------QQVNDISSKLG 156
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
GKHTT HV L GG +ADTPGFN+ L + + L Q F E ++ L C F
Sbjct: 157 LGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDYL-----GLCKF 210
Query: 278 NNCLHLGEPGCVVKGDWERYQY 299
+CLH EPGC V+ E+ +
Sbjct: 211 RDCLHQSEPGCAVRQAVEQGEI 232
|
Members of this protein were designated YjeQ and are now designated RsgA (ribosome small subunit-dependent GTPase A). The strongest motif in the alignment of these proteins is GXSGVGKS[ST], a classic P-loop for nucleotide binding. This protein has been shown to cleave GTP and remain bound to GDP. A role as a regulator of translation has been suggested. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option) [Protein synthesis, Translation factors]. Length = 245 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 3e-67
Identities = 72/188 (38%), Positives = 95/188 (50%), Gaps = 34/188 (18%)
Query: 125 LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPH 184
L GYE L S ++ G++ L L+ +T+V+ G SGVGKS+L+NAL
Sbjct: 1 LEELLEIYEAIGYEVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLLNALLPE-- 58
Query: 185 ASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
D R GE+S K GRG+HTT HV L PL GGG L DTPGF
Sbjct: 59 --------------------LDLRTGEISEKLGRGRHTTTHVELFPLPGGGLLIDTPGFR 98
Query: 245 QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RY 297
+ L + + LA+ FPE +E+ +C F +CLH EPGC VK E RY
Sbjct: 99 ELGLWHLDPEELAEYFPEFRELAG-----QCKFRDCLHTNEPGCAVKAAVENGEISEERY 153
Query: 298 QYYFQLLD 305
+ Y +LL+
Sbjct: 154 ENYLKLLE 161
|
Length = 161 |
| >gnl|CDD|237039 PRK12288, PRK12288, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 1e-41
Identities = 92/311 (29%), Positives = 145/311 (46%), Gaps = 55/311 (17%)
Query: 26 CVVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEILDP-------PVA- 75
C +R ++ ++ GD+VV G G++E V R++ + P P+A
Sbjct: 64 CNIRRTIRS----LVTGDRVVWRPGKEALEGVSGVVEAVHPRTSVLTRPDYYDGVKPIAA 119
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
N+D ++++ ++ P+L + R+LV E+ GI + LNK++L+D+E +N
Sbjct: 120 NIDQIVIVSAV-LPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIY 178
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY L S + GL+ L L + ++ VG SGVGKSSLINAL P A
Sbjct: 179 RNIGYRVLMVSSHTGEGLEELEAALTGRISIFVGQSGVGKSSLINALL--PEA------- 229
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ VG+VS SG G+HTT L GG L D+PG + L +
Sbjct: 230 -------------EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLE 276
Query: 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC-----VVKGDW--ERYQYYFQLL- 304
+ + Q F E ++ L C F +C H +PGC V +G R++ Y ++L
Sbjct: 277 PEQVTQGFVEFRDYLGT-----CKFRDCKHDDDPGCALREAVEEGKIAETRFENYHRILE 331
Query: 305 --DEIRIREEF 313
E++ R F
Sbjct: 332 SMAEVKTRRHF 342
|
Length = 347 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 5e-28
Identities = 85/294 (28%), Positives = 123/294 (41%), Gaps = 67/294 (22%)
Query: 42 GDKVVVGSIDWV--------------DRRGMIENVFQRST-------EILDPPVANVDHL 80
GD+ VG DWV RR ++F R +++ ANVD +
Sbjct: 66 GDRPAVG--DWVLLDNEKKARIVRLLPRR----SLFSRKAAGTRSEEQLI---AANVDTV 116
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
++ S++ + R+L A +G + L K +L ++ + G L
Sbjct: 117 FIVCSLNHD-FNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVL 175
Query: 141 FCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S GLD L L +T ++G SGVGKS+L+NAL L
Sbjct: 176 AVSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNAL-------------------L 216
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G E Q+ G V +G+HTT H L PL GG L DTPG + L + + +T
Sbjct: 217 GE---EVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLWD-AEDGVEET 272
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDE 306
F +I+E+ A+C F +C H EPGC V+ D R Q Y +L E
Sbjct: 273 FSDIEEL-----AAQCRFRDCAHEAEPGCAVQAAIENGELDERRLQSYRKLQRE 321
|
Length = 356 |
| >gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-12
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 33/148 (22%)
Query: 102 EAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG----LDSLLQRL 157
A G L + LNK +LV EVL WK + G ++ S +LG ++ +
Sbjct: 35 MALELGKKLIIVLNKADLVPREVLEKWKEVFESEGLPVVYVSARERLGTRILRRTIKELA 94
Query: 158 RDQTTVIVGPSG---VGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
D VIVG G VGKSS+INAL+ AS + PI GS +
Sbjct: 95 IDGKPVIVGVVGYPKVGKSSIINALKGRHSASTS--------PIPGSPGY---------- 136
Query: 215 KSGRGKHTTRHVSLLPLSGGGYLADTPG 242
T+ + L+ + YL DTPG
Sbjct: 137 --------TKGIQLVRIDSKIYLIDTPG 156
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-09
Identities = 40/154 (25%), Positives = 54/154 (35%), Gaps = 40/154 (25%)
Query: 101 VEAESTGIPLTLALNKVELVDEEVLNTWKSRL-HTWGYEPLFCSVESKLGLDSLLQRLRD 159
V L + LNK +LV +EVL W + L +G + F S + G+ L +
Sbjct: 22 VLINEKNKKLIMVLNKADLVPKEVLRKWVAELSELYGTKTFFISATNGQGILKLKAEITK 81
Query: 160 QTTV----------IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209
Q +VG VGKSS INAL +
Sbjct: 82 QKLKLKYKKGIRVGVVGLPNVGKSSFINALLN---------------------------- 113
Query: 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+ K G TT+ + L YL DTPG
Sbjct: 114 -KFKLKVGSIPGTTKLQQDVKLDKEIYLYDTPGI 146
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146 |
| >gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 43/131 (32%), Positives = 50/131 (38%), Gaps = 41/131 (31%)
Query: 112 LALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVG 171
L LNK +LV EE W G LF S L + T +VG VG
Sbjct: 47 LLLNKADLVTEEQRKAWARYFKKEGIVVLFFSA------------LNEATIGLVGYPNVG 94
Query: 172 KSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL 231
KSSLINAL +GSK +VS S GK T+H + L
Sbjct: 95 KSSLINAL-------------------VGSK--------KVSVSSTPGK--TKHFQTIFL 125
Query: 232 SGGGYLADTPG 242
G L D PG
Sbjct: 126 EPGITLCDCPG 136
|
Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 48/150 (32%)
Query: 112 LALNKVELVDEEVLNTWKSRL-HTWGYEPLFCSVESKLGL-----------DSLLQRLRD 159
L LNK +L +EV WK G +P+F S +S+ G + ++RL+
Sbjct: 66 LVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKK 125
Query: 160 -------QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
+VG VGKS+LIN L A
Sbjct: 126 KGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAK-------------------------T 160
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
S + G TT+ + + L G YL DTPG
Sbjct: 161 SNRPG----TTKGIQWIKLDDGIYLLDTPG 186
|
Length = 322 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-06
Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 31/105 (29%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222
+VG VGKS+LINAL +V VS G T
Sbjct: 3 ALVGRPNVGKSTLINALT-------------------------GAKVAIVSDYPG----T 33
Query: 223 TRHVSLLPLSGG--GYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
TR L L G L DTPG + + + + I+E
Sbjct: 34 TRDPILGVLGLGRQIILVDTPGLIEGASEGKGVEGFNRFLEAIRE 78
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 36/147 (24%)
Query: 109 PLTLALNKVEL----VDEEVLNTW-KSRLHTWGYEP---LFCSVESKLGLDSLLQ---RL 157
P+ L NK++L V+ + W K R G +P + S + G+D LL +
Sbjct: 92 PVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151
Query: 158 RDQTTV-IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
R++ V +VG + VGKSSLIN +L ++ +V T S
Sbjct: 152 RNKKDVYVVGVTNVGKSSLINK-------------------LLK----QNNGDKDVITTS 188
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGF 243
TT + +PL G L DTPG
Sbjct: 189 -PFPGTTLDLIEIPLDDGHSLYDTPGI 214
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 8e-06
Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 46/146 (31%)
Query: 114 LNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQ------------- 160
LNK +L D W + G LF + ++ G+ LL++ +
Sbjct: 53 LNKADLADPAKTKKWLKYFKSQGEPVLFVNAKNGKGVKKLLKKAKKLLKENEKLKAKGLL 112
Query: 161 ----TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
++VG VGKS+LIN LR A +VG K
Sbjct: 113 PRPLRAMVVGIPNVGKSTLINRLRGKKVA----------------------KVGN---KP 147
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPG 242
G TR + + L DTPG
Sbjct: 148 G----VTRGQQWIRIGPNIELLDTPG 169
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 53 VDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTL 112
VD G+ E E+ + D +LL+ + E A L GIP+ L
Sbjct: 52 VDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPIIL 111
Query: 113 ALNKVELVDEEVLNTWKSRLH---TWGYEPLFCSVESKLGLDSLLQRL 157
NK++L++E + G S ++ G+D L ++L
Sbjct: 112 VGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 31/148 (20%)
Query: 109 PLTLALNKVELV-----DEEVLNTWKSRLHTWGYEPL---FCSVESKLGLDSLLQRLRDQ 160
P+ L NK++L+ + K RL G + S + G++ L++ ++
Sbjct: 62 PVILVGNKIDLLPKDVKPNRLKQWVKKRLKIGGLKIKDVILVSAKKGWGVEELIEEIKKL 121
Query: 161 TTV-----IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
+VG + VGKS+LINAL + + S
Sbjct: 122 AKYRGDVYVVGATNVGKSTLINAL--LKSNGGKVQAQALVQRLTVSPIP----------- 168
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGF 243
TT + +PL G L DTPG
Sbjct: 169 -----GTTLGLIKIPLGEGKKLYDTPGI 191
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 8e-05
Identities = 36/136 (26%), Positives = 49/136 (36%), Gaps = 35/136 (25%)
Query: 109 PLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ-----------RL 157
P L LNK +L D EV W G + L + + G+ +L+ R
Sbjct: 53 PRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERR 112
Query: 158 RDQT-------TVIVGPSGVGKSSLINALRSSPHASDAA-----------DVDNWFE--- 196
+ + +I+G VGKS+LIN L A + E
Sbjct: 113 KAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLD 172
Query: 197 -P-ILGSKWFEDQRVG 210
P IL K EDQ VG
Sbjct: 173 TPGILWPK-LEDQEVG 187
|
Length = 287 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 28/85 (32%), Positives = 29/85 (34%), Gaps = 33/85 (38%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222
I G VGKSSL+NAL LG VG VS G T
Sbjct: 1 AIFGRPNVGKSSLLNAL-------------------LGQN------VGIVSPIPG----T 31
Query: 223 TRHVSL--LPLSGGG--YLADTPGF 243
TR L G L DTPG
Sbjct: 32 TRDPVRKEWELLPLGPVVLIDTPGL 56
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 110 LTLALNKVELVDEEVLNTWKSRLHTWGYEPLF-CSVESKLGLDSLLQRLR---------D 159
L LNK +LV V W L F S+ + G +L+ LR
Sbjct: 42 LIFVLNKCDLVPTWVTKRWVKVLSKEYPTLAFHASITNPFGKGALINLLRQFAKLHSDKK 101
Query: 160 QTTV-IVGPSGVGKSSLINALRS 181
Q +V +G VGKSS+IN LRS
Sbjct: 102 QISVGFIGYPNVGKSSVINTLRS 124
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
+ +VGP+G GKS+L+ A+ +P G + + + ++ +
Sbjct: 24 AGEIVALVGPNGSGKSTLLRAIA------------GLLKPTSGEILIDGKDIAKLPLEEL 71
Query: 218 RGKHTTRHVSLLP-LSGG 234
R R + +P LSGG
Sbjct: 72 R-----RRIGYVPQLSGG 84
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 33/131 (25%), Positives = 46/131 (35%), Gaps = 35/131 (26%)
Query: 114 LNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQT------------ 161
LNK +L D V W G + L + + G+ +++ +
Sbjct: 55 LNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGL 114
Query: 162 ------TVIVGPSGVGKSSLINALRSSPHASDAA-----------DVDNWFE----P-IL 199
+IVG VGKS+LIN L A + + E P IL
Sbjct: 115 LNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGIL 174
Query: 200 GSKWFEDQRVG 210
K FEDQ VG
Sbjct: 175 WPK-FEDQEVG 184
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 160 QTTVIVGPSGVGKSSLINAL 179
Q +VGPSG GK+SL+NAL
Sbjct: 377 QRIALVGPSGAGKTSLLNAL 396
|
Length = 588 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 8e-04
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGY 137
L+L +D L P L G P+ L LNK++LV +EE L +
Sbjct: 79 LVLLVVD-SDLTPVEEEAKLGLLRERGKPVLLVLNKIDLVPESEEEELLRERKLELLPDL 137
Query: 138 EPLFCSVESKLGLDSLLQRL 157
+ S G+D L +++
Sbjct: 138 PVIAVSALPGEGIDELRKKI 157
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.001
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 163 VIVGPSGVGKSSLINALRSSPH 184
V+ GPSG GKS+L+ AL
Sbjct: 9 VLSGPSGAGKSTLVKALLERDP 30
|
Length = 205 |
| >gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 36/108 (33%)
Query: 110 LTLALNKVELVDEEVLNTW--------------------KSRLHTWGYEPLFCSVESK-- 147
L L LNK++LV +E + W K L + + S +
Sbjct: 33 LVLVLNKIDLVPKENVEKWLKYLRNEFPTVAFKASTQQQKKNLS-RKSKKVKASDDLLSS 91
Query: 148 ---LGLDSLLQRL----RDQ-----TTV-IVGPSGVGKSSLINALRSS 182
LG D+LL+ L R++ TV +VG VGKSS+IN+L+ S
Sbjct: 92 SACLGADALLKLLKNYARNKGIKTSITVGVVGYPNVGKSSVINSLKRS 139
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171 |
| >gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.003
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 163 VIVGPSGVGKSSLINALRSSPH 184
V+ GPSGVGKS+L+ L
Sbjct: 3 VLSGPSGVGKSTLLKRLLEEFD 24
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. Length = 137 |
| >gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 156 RLRDQTTVIVGPSGVGKSSLINAL 179
+ + T++ GPSG GKS+LI+A+
Sbjct: 18 PIDPKGTLLTGPSGSGKSTLIDAI 41
|
Length = 60 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.004
Identities = 27/101 (26%), Positives = 33/101 (32%), Gaps = 29/101 (28%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH- 221
V+VG GVGKSSL+NAL VGEVS G +
Sbjct: 1 VVVGRGGVGKSSLLNALL-------------------------GGEVGEVSDVPGTTRDP 35
Query: 222 TTRHVSLLPLSGGGYLADTPG---FNQPSLLKVTKQSLAQT 259
L L DTPG F ++ + L
Sbjct: 36 DVYVKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGA 76
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 391 | |||
| PRK12289 | 352 | GTPase RsgA; Reviewed | 100.0 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 100.0 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 100.0 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 100.0 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 100.0 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 100.0 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.97 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.97 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.97 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.96 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.95 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 99.95 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.95 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.95 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.94 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.94 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.94 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.94 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.94 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.92 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.92 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.92 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.92 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.91 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.9 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.9 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.9 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.9 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.9 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.89 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.89 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.89 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.89 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.89 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.89 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.89 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.89 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.89 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.89 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.89 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.89 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.89 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.89 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.88 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.88 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.88 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.88 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.88 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.88 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.88 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.88 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.88 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.88 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.88 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.88 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.88 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.88 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.88 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.88 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.88 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.88 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.88 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.88 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.88 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.88 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.87 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.87 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.87 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.87 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.87 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.87 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.87 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.87 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.87 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.87 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.87 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.87 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.87 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.87 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.87 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.87 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.87 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.87 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.87 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.87 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.87 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.87 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.87 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.87 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.87 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.87 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.87 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.87 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.87 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.87 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.87 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.87 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.86 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.86 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.86 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.86 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.86 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.86 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.86 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.86 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.86 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.86 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.86 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.86 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.86 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.86 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.86 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.86 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.86 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.86 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.86 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.86 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.86 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.86 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.86 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.86 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.86 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.86 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.86 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.85 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.85 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.85 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.85 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.85 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.85 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.85 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.85 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.85 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.85 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.85 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.85 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.85 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.85 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.85 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.85 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.85 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.85 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.85 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.85 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.85 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.85 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.85 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.85 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.84 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.84 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.84 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.84 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.84 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.84 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.84 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.84 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.84 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.84 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.84 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.84 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.84 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.84 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.84 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.84 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.84 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.84 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.84 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.84 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.84 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.84 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.84 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.84 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.84 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.84 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.83 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.83 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.83 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.83 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.83 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.83 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.83 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.83 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.83 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.83 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.83 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.83 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.83 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.83 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.83 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.83 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.83 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.83 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.83 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.83 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.83 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.83 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.83 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.83 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.83 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.83 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.82 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.82 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.82 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.82 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.82 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.82 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.82 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.82 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.82 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.82 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.82 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.82 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.82 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.82 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.82 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.82 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.82 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.82 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.82 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.82 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.82 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.81 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.81 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.81 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.81 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.81 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.81 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.81 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.81 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.81 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.81 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.81 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.81 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.81 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.81 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.81 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.81 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.81 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.81 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.8 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.8 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.8 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.8 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.8 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.8 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.8 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.8 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.8 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.8 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.8 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.8 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.8 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.79 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.79 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.79 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.79 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.79 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.79 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.79 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.79 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.79 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.79 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.79 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.79 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.79 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.79 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.79 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.79 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.79 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.79 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.79 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.78 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.78 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.78 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.78 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.78 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.78 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.78 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.78 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.77 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.77 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.77 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.77 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.77 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.77 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.77 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.77 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.77 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.76 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.76 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.76 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.76 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.76 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.76 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.76 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.76 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.76 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.75 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.75 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.75 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.75 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.75 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.75 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.75 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.75 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.75 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.74 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.74 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.73 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.73 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.73 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.73 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.73 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.73 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.73 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.73 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.73 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.72 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.71 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.71 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.71 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.7 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 99.69 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.68 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.65 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.65 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.65 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.64 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.63 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.63 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.62 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.62 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.62 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 99.61 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.61 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.6 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.59 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.59 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.59 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.58 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.58 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.57 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.56 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 99.56 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.56 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.54 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.54 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.54 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.53 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.52 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.51 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.48 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.48 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.47 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.45 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.45 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 99.44 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 99.43 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.42 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 99.42 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.41 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.35 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.34 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 99.32 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.32 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.27 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.24 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.22 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.21 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.21 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.21 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.18 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.16 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 99.14 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.13 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.11 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.08 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.05 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.05 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.04 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.03 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.02 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 98.99 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 98.99 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 98.97 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 98.95 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 98.79 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 98.75 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 98.75 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 98.72 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 98.72 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 98.7 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.7 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 98.7 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.69 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 98.66 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.56 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 98.54 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 98.44 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 98.42 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 98.41 | |
| cd04466 | 68 | S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family ( | 98.41 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 98.4 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 98.29 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 98.24 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.22 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 98.22 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 98.18 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 98.16 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.15 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.11 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 98.1 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 98.06 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.05 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 97.98 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 97.98 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 97.97 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 97.97 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.95 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 97.94 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.92 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 97.91 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 97.91 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 97.91 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 97.89 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 97.89 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 97.88 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 97.88 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 97.88 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 97.87 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 97.86 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 97.84 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 97.82 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.82 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 97.81 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.8 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.8 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 97.79 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 97.75 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 97.75 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 97.73 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 97.73 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 97.71 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 97.71 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.7 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 97.7 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.68 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 97.68 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 97.67 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.66 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.66 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 97.65 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 97.64 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.62 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 97.61 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 97.61 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.59 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 97.59 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 97.59 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 97.59 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 97.57 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 97.57 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 97.57 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 97.55 |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=486.39 Aligned_cols=318 Identities=49% Similarity=0.877 Sum_probs=292.0
Q ss_pred CcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccccccccccccccceeEEEEEecCCCCCHHHHHHHH
Q 016339 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100 (391)
Q Consensus 21 ~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L 100 (391)
+..++|..|+++++.+..++|||||.++..+|.+.+|+|++|+||+|.+.||++||+|++++|+++..|.+++..|+|||
T Consensus 34 ~~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L 113 (352)
T PRK12289 34 PSLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELDRPPVANADQILLVFALAEPPLDPWQLSRFL 113 (352)
T ss_pred ceEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEeccccceechhhhcCCEEEEEEECCCCCCCHHHHHHHH
Confidence 45799999999998888899999999998888888899999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHh
Q 016339 101 VEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 101 ~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
+.++..++++++|+||+||+++++.+.|...|..+||+++.+|..++.+++.|.-.+.+++++|+|+||||||||||.|.
T Consensus 114 ~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~~ki~v~iG~SgVGKSSLIN~L~ 193 (352)
T PRK12289 114 VKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLEQLRNKITVVAGPSGVGKSSLINRLI 193 (352)
T ss_pred HHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhccceEEEEeCCCCCHHHHHHHHc
Confidence 99999999999999999999887778888888999999999999999999999888889999999999999999999999
Q ss_pred cCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhc
Q 016339 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260 (391)
Q Consensus 181 gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~ 260 (391)
+.. ...++.++...++|+|||+++.++.++.+++++||||++.+.+ .+..+++...|
T Consensus 194 ~~~----------------------~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~~l-~~~~~~l~~~F 250 (352)
T PRK12289 194 PDV----------------------ELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPDL-DCSPRELAHYF 250 (352)
T ss_pred Ccc----------------------ccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccccc-ccCHHHHHhhH
Confidence 877 3567788888999999999999999987889999999999988 57778899999
Q ss_pred hhHHhhcCcccccccccccccccCCCcEEEecCHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccCcccccCC
Q 016339 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEP 340 (391)
Q Consensus 261 p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~~~~~~~~~ll~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 340 (391)
|++...++. ..|.|.+|.|.+||+|+|..+|+||++|+++++++....+..++ +.++|..+++|++.+|++++||
T Consensus 251 ~e~~~~~~~---~~CrF~dC~H~~EPgCaV~~~~~Ry~~Y~~l~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 325 (352)
T PRK12289 251 PEARQRLAQ---GNCQFNDCLHRDEPNCAVRGDWERYEHYLEFLEEAIAQQEQLQQ--SADEESTLKLKIKASGQERYEP 325 (352)
T ss_pred HHHHHhHhh---CceEccCCccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHhhc--CccccccceeeecCCCcccccc
Confidence 999887631 48999999999999999999999999999999998776665554 6799999999999999999999
Q ss_pred ccccccccccchhhhhHHHHHHHhhc
Q 016339 341 RLEPKKHRRQSRKRINQSILDELDEL 366 (391)
Q Consensus 341 ~~~~~~~~r~~rr~~~~~~~~~~~~~ 366 (391)
++++|+|||.|||+.+|++++.+++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (352)
T PRK12289 326 KLESKKYRRPSRRQQHQDLQDLYENQ 351 (352)
T ss_pred ccccccccchhHHHHHHHHHHHhhcc
Confidence 99999999999999999998877653
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=398.49 Aligned_cols=262 Identities=41% Similarity=0.712 Sum_probs=243.1
Q ss_pred CCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccccccccccccccceeEEEEEecCCCCCHHHHHH
Q 016339 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98 (391)
Q Consensus 19 ~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r 98 (391)
..+..+.|..|+.|++....++|||||.++...+. |+|+.|++|+|.+.||++||+|++++|+++..|.|++.+|+|
T Consensus 25 ~~~~~~~~~~r~~lr~~~~~~vVGD~V~~~~~~~~---g~I~~i~~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR 101 (301)
T COG1162 25 VDGEVYRCRARGNLRKKDLKPVVGDRVVFEDENNN---GVIEKILPRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDR 101 (301)
T ss_pred cccceeeeeeecceeccCccccccCeEEEecCCCc---ceEEEEecccCceeCCcccccceEEEEEeccCCCCCHHHHHH
Confidence 34557999999999988899999999999976533 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEeCCCCCCHHHHH--HHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHH
Q 016339 99 FLVEAESTGIPLTLALNKVELVDEEVLN--TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLI 176 (391)
Q Consensus 99 ~L~~a~~~~~~~~lvlnK~Dl~~~~~~~--~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLL 176 (391)
||+.|++.|+.+++|+||+||+++++.. .+...|..+||+.+.+|..+..+++.+...++|++++|+|+||+||||||
T Consensus 102 ~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLi 181 (301)
T COG1162 102 YLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLI 181 (301)
T ss_pred HHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCCeEEEECCCCCcHHHHH
Confidence 9999999999999999999999887665 46778888999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHH
Q 016339 177 NALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256 (391)
Q Consensus 177 n~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l 256 (391)
|.|.+.. .+.++.+++..++|+|||++..++.++.+|+++|||||+...++.+..+++
T Consensus 182 N~L~p~~----------------------~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l 239 (301)
T COG1162 182 NALLPEL----------------------NQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDL 239 (301)
T ss_pred HhhCchh----------------------hhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHH
Confidence 9999976 578999999999999999999999998899999999999999988899999
Q ss_pred hhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHHHH
Q 016339 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 257 ~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~~~ 310 (391)
...||++...++ .|.|..|.|.+||+|.|.. ++.||+.|++++.++...
T Consensus 240 ~~~F~ef~~~~~-----~CkFr~C~H~~EPgCav~~av~~g~i~~~Ry~~Y~kll~el~~~ 295 (301)
T COG1162 240 VQAFPEFAELAR-----QCKFRDCTHTHEPGCAVKAAVEEGEIAPERYENYLKLLDELSGN 295 (301)
T ss_pred HHHhHHHHHHhc-----CCCCCCCCCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 999999998875 8999999999999999986 679999999999998743
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=375.65 Aligned_cols=260 Identities=32% Similarity=0.574 Sum_probs=230.1
Q ss_pred CCCcEEEEEecccccccCCCceeCcEEEEceeccc--CceeEEEEeecccccccccc--------ccccceeEEEEEecC
Q 016339 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV--DRRGMIENVFQRSTEILDPP--------VANVDHLLLLFSMDQ 88 (391)
Q Consensus 19 ~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~--~~~~~i~~v~~R~~~~~~~~--------~anvD~~liv~s~~~ 88 (391)
..|..+.|..|+.++ .++|||||.++..+-. ...|+|++|+||++.+.||. |||+|++++|+++ .
T Consensus 57 ~~g~~~~~~~~g~~~----~~~vGD~V~~~~~~~~~~~~~~~I~~il~R~n~L~R~~~~~~~q~iaANvD~vlIV~s~-~ 131 (347)
T PRK12288 57 ADGEVHRCNIRRTIR----SLVTGDRVVWRPGKEALEGVSGVVEAVHPRTSVLTRPDYYDGVKPIAANIDQIVIVSAV-L 131 (347)
T ss_pred CCCcEEEEEecccCC----CCCCCcEEEEEeCCCcccccceEEEEEecccceEECCCcccccceEEEEccEEEEEEeC-C
Confidence 456678999999885 3999999999753211 12489999999999999876 7999999999997 5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHH---HHHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEE
Q 016339 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIV 165 (391)
Q Consensus 89 p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~---~~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLv 165 (391)
|.+++..++|||+.++..++++++|+||+||.++. ....|...|..+||+.+.+|..++.+++.+...+.+++++|+
T Consensus 132 p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~ki~~~v 211 (347)
T PRK12288 132 PELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAALTGRISIFV 211 (347)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhhCCEEEE
Confidence 99999999999999999999999999999998754 245677778889999999999999999999888888999999
Q ss_pred ecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccch
Q 016339 166 GPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ 245 (391)
Q Consensus 166 GpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~ 245 (391)
|+||||||||||+|+|.. ...++.++...++|+|||++..++.+..++.++||||++.
T Consensus 212 G~sgVGKSTLiN~Ll~~~----------------------~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~ 269 (347)
T PRK12288 212 GQSGVGKSSLINALLPEA----------------------EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVRE 269 (347)
T ss_pred CCCCCCHHHHHHHhcccc----------------------ceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCc
Confidence 999999999999999987 4567888988999999999999999987888999999999
Q ss_pred HHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHHHH
Q 016339 246 PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 246 ~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~~~ 310 (391)
..+..+..+++...||+|.... +.|.|.+|.|.+||+|+|.. ++.||++|+++++++...
T Consensus 270 ~~l~~~~~~~l~~~F~ei~~~~-----~~CrF~dC~H~~EpgCaV~~Av~~g~i~~~Ry~~Y~~l~~e~~~~ 336 (347)
T PRK12288 270 FGLWHLEPEQVTQGFVEFRDYL-----GTCKFRDCKHDDDPGCALREAVEEGKIAETRFENYHRILESMAEV 336 (347)
T ss_pred ccCCCCCHHHHHHhhHHHHHHh-----cCCCCCCCccCCCCCChHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9998888889999999998876 47999999999999999986 789999999999998753
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=354.80 Aligned_cols=255 Identities=44% Similarity=0.710 Sum_probs=225.2
Q ss_pred CcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeecccccccccc--------ccccceeEEEEEecCCCCC
Q 016339 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP--------VANVDHLLLLFSMDQPKLE 92 (391)
Q Consensus 21 ~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~--------~anvD~~liv~s~~~p~~~ 92 (391)
+..+.|.+|+.+++.+..++|||||.++..+ ++.++|++|+||+|.+.||. +||+|++++|+++..|.++
T Consensus 17 ~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~~~~~~~i~anvD~vllV~d~~~p~~s 94 (287)
T cd01854 17 GGELRCRARGKLRKKGIKPVVGDWVEVEPDD--DGEGVIVRVLPRKNLLSRPAAGGREQVIAANVDQLVIVVSLNEPFFN 94 (287)
T ss_pred CeEEEEEeccccccCCCCccCCCEEEEEecC--CCcEEEEEEECCCceEEccCCCCcceeEEEeCCEEEEEEEcCCCCCC
Confidence 6689999999998766789999999998654 56799999999999999998 9999999999999988889
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcH
Q 016339 93 PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGK 172 (391)
Q Consensus 93 ~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGK 172 (391)
+..+++||..++..++++++|+||+||.++.+...|...+..+||+.+.+|..++.+++.+...+.+++++|+|+|||||
T Consensus 95 ~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~k~~~~~G~sg~GK 174 (287)
T cd01854 95 PRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELREYLKGKTSVLVGQSGVGK 174 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhccceEEEECCCCCCH
Confidence 99999999999999999999999999987755555666667789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCC
Q 016339 173 SSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252 (391)
Q Consensus 173 STLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~ 252 (391)
|||||+|.|.. .+.. +.++...++|+|+|++..++.+..+++++||||+....+..+.
T Consensus 175 STlin~l~~~~------------~~~~----------g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 232 (287)
T cd01854 175 STLINALLPDL------------DLAT----------GEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHID 232 (287)
T ss_pred HHHHHHHhchh------------hccc----------cceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCC
Confidence 99999999987 3333 3445556788999999999988877899999999987766778
Q ss_pred hhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHH
Q 016339 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLL 304 (391)
Q Consensus 253 ~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll 304 (391)
..++.+.||++.... ..|.|.+|.|.+||+|.|.+ +..||++|++++
T Consensus 233 ~~~~~~~f~~~~~~~-----~~C~F~~C~H~~Ep~Cav~~av~~g~i~~~Ry~~y~~l~ 286 (287)
T cd01854 233 PEELAHYFPEFRELA-----GQCKFRDCTHTNEPGCAVKAAVEAGEISPERYESYLKLL 286 (287)
T ss_pred HHHHHHHhHHHHHHh-----CCCCCCCCcCCCCCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 889999999988765 47999999999999999987 678999999886
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=346.59 Aligned_cols=261 Identities=40% Similarity=0.663 Sum_probs=231.2
Q ss_pred CCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccccccccccc-------cccceeEEEEEecCCCCC
Q 016339 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV-------ANVDHLLLLFSMDQPKLE 92 (391)
Q Consensus 20 ~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~-------anvD~~liv~s~~~p~~~ 92 (391)
.+..+.|.+||.+++.+..++|||||.++.. .++.|.|++|+||++.+.||.+ ||+|++++|+++..|.++
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~--~~~~g~i~~i~~R~~~l~R~~~~~~q~iaaniD~vllV~d~~~p~~~ 96 (298)
T PRK00098 19 DGQVYQCRARGKFRKKTNTPAVGDRVEFSAE--NNDEGVILEIHERKNLLVRPPIFKSKLIAANVDQAVLVFAAKEPDFS 96 (298)
T ss_pred CCCEEEEEeccccccCCCCcCCCCEEEEEEC--CCCcEEEEEEeCCCceEECCCCccccceeecCCEEEEEEECCCCCCC
Confidence 3568999999999876677999999999753 3567999999999999999987 999999999999889999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCCC-CHHHHHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCc
Q 016339 93 PFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVG 171 (391)
Q Consensus 93 ~~~l~r~L~~a~~~~~~~~lvlnK~Dl~-~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsG 171 (391)
...+++||..++..++++++|+||+||. +......|...+..+|++.+.+|..++.+++.+.-.+.|++++|+|+||||
T Consensus 97 ~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~gk~~~~~G~sgvG 176 (298)
T PRK00098 97 TDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDELKPLLAGKVTVLAGQSGVG 176 (298)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhccCceEEEECCCCCC
Confidence 9999999999999999999999999997 444455677777889999999999999999999888899999999999999
Q ss_pred HHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhC
Q 016339 172 KSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251 (391)
Q Consensus 172 KSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~ 251 (391)
||||||+|+|.. . ..++.++...++|+|||++..++....+++++||||+....+..+
T Consensus 177 KStlin~l~~~~------------~----------~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~ 234 (298)
T PRK00098 177 KSTLLNALAPDL------------E----------LKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDL 234 (298)
T ss_pred HHHHHHHHhCCc------------C----------CCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCC
Confidence 999999999987 2 334566667789999999999988887889999999998888777
Q ss_pred ChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHHH
Q 016339 252 TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 252 ~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~~ 309 (391)
..+++...||++...++ .|.|.+|.|.++|+|.|.. ++.||++|+++++|+..
T Consensus 235 ~~~~~~~~f~~~~~~~~-----~c~f~~c~h~~ep~c~v~~a~~~g~i~~~Ry~~y~~l~~e~~~ 294 (298)
T PRK00098 235 EAEELEHYFPEFRPLSG-----DCKFRNCTHLHEPGCAVKAAVEEGEIAPSRYESYLQILEEIEN 294 (298)
T ss_pred CHHHHHHHHHHHHHHhC-----CCCCCCCcCCCCCCChHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 88899999999888774 7999999999999999986 78999999999999865
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=339.95 Aligned_cols=236 Identities=40% Similarity=0.653 Sum_probs=213.0
Q ss_pred ceeCcEEEEceecccCceeEEEEeeccccccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCC
Q 016339 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118 (391)
Q Consensus 39 ~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~D 118 (391)
++|||||.++..++ +.|+|++|++|.+.+.||.++|+|++++|+++..|.++...+++|+..++..++++++|+||+|
T Consensus 1 ~~vGD~V~~~~~~~--~~~~i~~i~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~D 78 (245)
T TIGR00157 1 LVVGDRVVWEPGNV--VKVYGGAIAERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKID 78 (245)
T ss_pred CCCCcEEEEEecCC--CceEEEEEecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcc
Confidence 58999999986543 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHH-HHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC
Q 016339 119 LVDEEVL-NTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197 (391)
Q Consensus 119 l~~~~~~-~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p 197 (391)
|.++.+. ..|...+.++||+.+.+|..++.+++.+-..+.+++++|+|+||+|||||||.|.+..
T Consensus 79 L~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~~~~~~~G~sgvGKStLiN~L~~~~-------------- 144 (245)
T TIGR00157 79 LLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQNRISVFAGQSGVGKSSLINALDPSV-------------- 144 (245)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcCCEEEEECCCCCCHHHHHHHHhhhh--------------
Confidence 9865443 3566778889999999999999999998888889999999999999999999999987
Q ss_pred CCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCccccccccc
Q 016339 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 198 ~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
...++.++...++|+|||++..++.+ .+++++||||++...+..+..+++...||++....+ .|.|
T Consensus 145 --------~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~~~-----~C~f 210 (245)
T TIGR00157 145 --------KQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDYLG-----ECKF 210 (245)
T ss_pred --------hccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccccCCCCCCHHHHHHhCHHHHHHhC-----CCCC
Confidence 45677888888999999999999888 577999999999999988888899999999887764 7999
Q ss_pred ccccccCCCcEEEec-------CHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG-------DWERYQYYFQLL 304 (391)
Q Consensus 278 aralh~~eP~~lllD-------D~~~~~~~~~ll 304 (391)
.+|.|.+||+|.|.. ++.||+.|++++
T Consensus 211 ~~C~H~~ep~C~v~~a~~~g~i~~~ry~~y~~~~ 244 (245)
T TIGR00157 211 RDCLHQSEPGCAVRQAVEQGEISEWRYENYLKLI 244 (245)
T ss_pred CCCccCCCCCChHHHHHHcCCCCHHHHHHHHHHh
Confidence 999999999999987 678999999886
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=327.83 Aligned_cols=257 Identities=31% Similarity=0.476 Sum_probs=213.3
Q ss_pred cEEEEEecccccc----cCCCceeCcEEEEceecccCceeEEEEeecccccccccc----------ccccceeEEEEEec
Q 016339 22 VELLCVVRALLKK----IKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP----------VANVDHLLLLFSMD 87 (391)
Q Consensus 22 ~~~~c~~r~~~~~----~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~----------~anvD~~liv~s~~ 87 (391)
..+.|.++++++. ....++|||||.++. ++.|+|++|+||+|.+.||+ |||||++++|++++
T Consensus 48 ~~~~~~~~gk~~~~~~~~~~~~~vGD~V~~~~----~~~g~I~~i~pR~~~L~R~~~~~~~~~q~iaANvD~vliV~s~~ 123 (356)
T PRK01889 48 GEVRAEVSGKWRHEAFPPGDRPAVGDWVLLDN----EKKARIVRLLPRRSLFSRKAAGTRSEEQLIAANVDTVFIVCSLN 123 (356)
T ss_pred cEEEEEecchhhccccccCCCCccCcEEEEec----CCceEEEEEECCCceEEcCCCCCCccceeEEEeCCEEEEEEecC
Confidence 4578999998864 234589999999974 45799999999999999986 69999999999995
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEEcCCccchHHHhhcc-cCCEEEEE
Q 016339 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRL-RDQTTVIV 165 (391)
Q Consensus 88 ~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLv 165 (391)
|.+++..++|||+.|+..|+++++|+||+||+++.+ ...|...+ ..||+++.+|..++.+++.|...+ +|++++|+
T Consensus 124 -p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~~L~~~L~~g~~~~lv 201 (356)
T PRK01889 124 -HDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLDVLAAWLSGGKTVALL 201 (356)
T ss_pred -CCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHHHHHHHhhcCCEEEEE
Confidence 899999999999999999999999999999987632 22333333 568999999999999999999999 68999999
Q ss_pred ecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccch
Q 016339 166 GPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ 245 (391)
Q Consensus 166 GpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~ 245 (391)
|+||+|||||+|+|+|.. .+..|+|.+++. .++|+|++..+.....+++++||||+..
T Consensus 202 G~sgvGKStLin~L~g~~------------~~~~G~i~~~~~----------~g~~tt~~~~l~~l~~~~~l~DtpG~~~ 259 (356)
T PRK01889 202 GSSGVGKSTLVNALLGEE------------VQKTGAVREDDS----------KGRHTTTHRELHPLPSGGLLIDTPGMRE 259 (356)
T ss_pred CCCCccHHHHHHHHHHhc------------ccceeeEEECCC----------CCcchhhhccEEEecCCCeecCCCchhh
Confidence 999999999999999998 788888876542 3456665555555555678999999988
Q ss_pred HHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHHHHHh
Q 016339 246 PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREE 312 (391)
Q Consensus 246 ~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~~~~~ 312 (391)
..+... ...+...||++.... ..|.|..|.|..+|+|.|.. +..+|..|+++++|+.....
T Consensus 260 ~~l~~~-~~~l~~~f~~~~~~~-----~~c~f~~c~h~~E~~c~v~~a~~~~~i~~~r~~~Y~~l~~e~~~~~~ 327 (356)
T PRK01889 260 LQLWDA-EDGVEETFSDIEELA-----AQCRFRDCAHEAEPGCAVQAAIENGELDERRLQSYRKLQREQAYNAA 327 (356)
T ss_pred hcccCc-hhhHHHhHHHHHHHH-----ccCCCCCCCCCCCCCChHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 776543 255778899877654 47999999999999999986 67899999999999876443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-32 Score=255.70 Aligned_cols=200 Identities=18% Similarity=0.153 Sum_probs=162.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc------
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR------ 208 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~------ 208 (391)
.++.+.++|++..+|+++|+++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|..
T Consensus 5 ~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~------------~p~~G~V~~~g~~v~~p~~ 72 (248)
T COG1116 5 EIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE------------KPTSGEVLLDGRPVTGPGP 72 (248)
T ss_pred EEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCcccCCCCC
Confidence 3578899999999999999999 99999999999999999999999999 9999999999874
Q ss_pred -ccccccccCCCccee--eeEEEEeccCCCc-ccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC
Q 016339 209 -VGEVSTKSGRGKHTT--RHVSLLPLSGGGY-LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 209 -v~~v~~~~~~~~~tt--r~i~~v~~~~~~~-l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~ 284 (391)
++.++|...+.++.| .|+.+ .+...+. -.+........+..+++.+..++||. +||||||||++||||+ +.
T Consensus 73 ~~~~vFQ~~~LlPW~Tv~~NV~l-~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~---qLSGGMrQRVaiARAL-~~ 147 (248)
T COG1116 73 DIGYVFQEDALLPWLTVLDNVAL-GLELRGKSKAEARERAKELLELVGLAGFEDKYPH---QLSGGMRQRVAIARAL-AT 147 (248)
T ss_pred CEEEEeccCcccchhhHHhhhee-hhhccccchHhHHHHHHHHHHHcCCcchhhcCcc---ccChHHHHHHHHHHHH-hc
Confidence 466777777777766 55544 2222221 11112245566788999999999999 9999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHHHHHHHHHHhh--hhhhhhcccccccccccccCcccccCCccccccccccch
Q 016339 285 EPGCVVKG------DWERYQYYFQLLDEIRIREEF--QLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSR 352 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~ll~el~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~~r 352 (391)
+|+++++| |.-....+.+.+.++.++... .+.|++.+++..+..++..++..|+......+.....+|
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR 223 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPR 223 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCc
Confidence 99999999 788899999999999887666 567888888888888888888887666555555555554
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-32 Score=264.37 Aligned_cols=161 Identities=17% Similarity=0.241 Sum_probs=141.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..+++++|+.+ +|++++|+||||||||||||+|+|++ +|++|+|.|+|.+++.++
T Consensus 4 i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe------------~~~~G~I~i~g~~vt~l~ 71 (338)
T COG3839 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE------------EPTSGEILIDGRDVTDLP 71 (338)
T ss_pred EEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCC
Confidence 45688999999877999999999 89999999999999999999999999 999999999999998877
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCccc---------------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPGF---------------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg~---------------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
+. .|+++++||++..| +.++-+| .......++++++++++|. +|||||+||
T Consensus 72 P~-------~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~---~LSGGQrQR 141 (338)
T COG3839 72 PE-------KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL---QLSGGQRQR 141 (338)
T ss_pred hh-------HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc---cCChhhHHH
Confidence 63 47899999986554 3444322 1233457789999999999 999999999
Q ss_pred cccccccccCCCcEEEecCHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccCcccccCCccccccccccchhh
Q 016339 275 CSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKR 354 (391)
Q Consensus 275 ~~iaralh~~eP~~lllDD~~~~~~~~~ll~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~~rr~ 354 (391)
|++|||+ +.+|+++++| ||++++|+++|.++|.
T Consensus 142 VAlaRAl-Vr~P~v~L~D----------------------------------------------EPlSnLDa~lR~~mr~ 174 (338)
T COG3839 142 VALARAL-VRKPKVFLLD----------------------------------------------EPLSNLDAKLRVLMRS 174 (338)
T ss_pred HHHHHHH-hcCCCEEEec----------------------------------------------CchhHhhHHHHHHHHH
Confidence 9999999 9999999999 9999999999999999
Q ss_pred hhHHHHHHHh
Q 016339 355 INQSILDELD 364 (391)
Q Consensus 355 ~~~~~~~~~~ 364 (391)
++.++|+++.
T Consensus 175 ei~~lh~~l~ 184 (338)
T COG3839 175 EIKKLHERLG 184 (338)
T ss_pred HHHHHHHhcC
Confidence 9999998873
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=244.26 Aligned_cols=162 Identities=23% Similarity=0.266 Sum_probs=127.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc----
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG---- 210 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~---- 210 (391)
.++++.++|++..+|++|++++ +|++++|+|||||||||||++|.++. .|++|+|+++|..+.
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE------------~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE------------EPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred EEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc------------CCCCceEEECCEeccchhh
Confidence 3578999999999999999999 99999999999999999999999999 999999999996553
Q ss_pred ---------ccccccCCCccee--eeEEEEeccCCCc-ccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccc
Q 016339 211 ---------EVSTKSGRGKHTT--RHVSLLPLSGGGY-LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 211 ---------~v~~~~~~~~~tt--r~i~~v~~~~~~~-l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
.|+|...+++|.| .|+.+-+..-.+. ..+........|..+++.+-++.||. +|||||||||+||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~---qLSGGQqQRVAIA 148 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA---QLSGGQQQRVAIA 148 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc---ccCcHHHHHHHHH
Confidence 3444444444443 3332222111110 00011122345678899999999999 9999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
||| +.+|+++++| ||+...++++.+.+|.++.-+
T Consensus 149 RAL-aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmT 188 (240)
T COG1126 149 RAL-AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMT 188 (240)
T ss_pred HHH-cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCe
Confidence 999 9999999999 999999999999999877543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-30 Score=256.77 Aligned_cols=160 Identities=17% Similarity=0.286 Sum_probs=138.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++|+.| +|++++|+|||||||||||++|+|+. .|++|+|+++|+++..++
T Consensus 6 l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe------------~p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE------------QPSSGEILLDGEDITDVP 73 (352)
T ss_pred EEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCC
Confidence 34688999999999999999999 89999999999999999999999999 999999999999887666
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC----------------cccchHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT----------------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt----------------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
. ..|++.++||++..+ +.++ .......+..+++.++++++|. +|||||+|
T Consensus 74 p-------~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~---qLSGGQqQ 143 (352)
T COG3842 74 P-------EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH---QLSGGQQQ 143 (352)
T ss_pred h-------hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh---hhChHHHH
Confidence 5 245666666665433 2232 1133455677889999999999 99999999
Q ss_pred ccccccccccCCCcEEEecCHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccCcccccCCccccccccccchh
Q 016339 274 KCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRK 353 (391)
Q Consensus 274 r~~iaralh~~eP~~lllDD~~~~~~~~~ll~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~~rr 353 (391)
|+++|||| +.+|+++++| ||.++++.++|..+|
T Consensus 144 RVALARAL-~~~P~vLLLD----------------------------------------------EPlSaLD~kLR~~mr 176 (352)
T COG3842 144 RVALARAL-VPEPKVLLLD----------------------------------------------EPLSALDAKLREQMR 176 (352)
T ss_pred HHHHHHHh-hcCcchhhhc----------------------------------------------CcccchhHHHHHHHH
Confidence 99999999 9999999999 999999999999999
Q ss_pred hhhHHHHHHH
Q 016339 354 RINQSILDEL 363 (391)
Q Consensus 354 ~~~~~~~~~~ 363 (391)
.+..++|.++
T Consensus 177 ~Elk~lq~~~ 186 (352)
T COG3842 177 KELKELQREL 186 (352)
T ss_pred HHHHHHHHhc
Confidence 9999999887
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-29 Score=236.37 Aligned_cols=181 Identities=17% Similarity=0.202 Sum_probs=146.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc-----
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV----- 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v----- 209 (391)
.|+++++.|++..+++++||+| +|++++|+|||||||||+|++|.++. +|++|+|+|+|.++
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi------------ept~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI------------EPTSGEILIDGEDISDLDP 70 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc------------CCCCceEEECCeecccCCH
Confidence 4789999999999999999999 89999999999999999999999999 99999999999764
Q ss_pred -------cccccccCCCccee--eeEEEEeccCCCcccCCcccchHHHHhCCh--hHHhhhchhHHhhcCcccccccccc
Q 016339 210 -------GEVSTKSGRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTK--QSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 210 -------~~v~~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~--~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
+++-|..+++||.| +|+++++.-.+..-........+.+..+++ .+++++||. +||||||||+.+|
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~---eLSGGQQQRVGv~ 147 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH---ELSGGQQQRVGVA 147 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch---hcCcchhhHHHHH
Confidence 66677778888887 778777754332111112223444555555 468999999 9999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh--hhhhhhccccccccccccc
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF--QLRTFGTKREGDVRYKVGD 332 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~--~~~~~~~~~~~~~~~~~~~ 332 (391)
||+ +.+|+++++| ||..+..+.+.+.++.+.... .+.+++.+++-.+..++..
T Consensus 148 RAL-AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~v 208 (309)
T COG1125 148 RAL-AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAV 208 (309)
T ss_pred HHH-hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEE
Confidence 999 9999999999 899999999999999877666 4566666665555555433
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-28 Score=219.10 Aligned_cols=153 Identities=46% Similarity=0.833 Sum_probs=120.2
Q ss_pred HHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec
Q 016339 126 NTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (391)
Q Consensus 126 ~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~ 205 (391)
+.|.+.|+++||+++.+|..+..+++.+.-.+++++++|+|+||||||||||.|.+..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~---------------------- 59 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPEA---------------------- 59 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS----------------------
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc----------------------
Confidence 4677889999999999999999999999999999999999999999999999999986
Q ss_pred CccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCC
Q 016339 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (391)
Q Consensus 206 g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~e 285 (391)
.+.++.++...++|+|||++..++.++.+++++||||++...+..+..+++...||++....+ .|.|.+|.|.+|
T Consensus 60 ~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~~~-----~CkF~~C~H~~E 134 (161)
T PF03193_consen 60 KQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLWHIDPEELAQYFPEFRPLAG-----QCKFRDCTHIHE 134 (161)
T ss_dssp ----S--------------SEEEEEETTSEEEECSHHHHT--GCCS-HHHHHHCSGGGHHHTT-----HSSSTTTTSSSS
T ss_pred chhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccccCCHHHHHHHHHHhccccC-----CCCccCCCCCCC
Confidence 467788999989999999999999998899999999999999988889999999999988764 899999999999
Q ss_pred CcEEEec-------CHHHHHHHHHHHH
Q 016339 286 PGCVVKG-------DWERYQYYFQLLD 305 (391)
Q Consensus 286 P~~lllD-------D~~~~~~~~~ll~ 305 (391)
|+|+|.. ++.||+.|+++++
T Consensus 135 p~CaV~~av~~g~i~~~Ry~~Y~~l~~ 161 (161)
T PF03193_consen 135 PGCAVKAAVENGEISPERYESYLKLLD 161 (161)
T ss_dssp TT-HHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred CCChHHHHHHCCCCcHHHHHHHHHHhC
Confidence 9999986 6789999999874
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-29 Score=222.06 Aligned_cols=160 Identities=16% Similarity=0.230 Sum_probs=136.9
Q ss_pred CCeeEEEEcCCcc-chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~~~-~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.|++|++.|..+. +|++|||.+ +|+++-|+|||||||||||++|.+.. +|++|+|+++|.+++.+.
T Consensus 3 ~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e------------~pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 3 RFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE------------RPTRGKILVNGHDLSRLK 70 (223)
T ss_pred eehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh------------cCCCceEEECCeeccccc
Confidence 4678888997666 999999999 99999999999999999999999999 999999999999998887
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.+ .-++.+++++++||++... ++|+- |. ....|..+++.+-++.+|. +||||||||
T Consensus 71 ~~--~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~---~LSGGEQQR 145 (223)
T COG2884 71 GR--EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS---QLSGGEQQR 145 (223)
T ss_pred cc--ccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc---ccCchHHHH
Confidence 63 4466789999999997542 34441 11 2234667788888889999 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
++||||+ ++.|.+++.| ||.....+++++++++....+
T Consensus 146 vaIARAi-V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtT 189 (223)
T COG2884 146 VAIARAI-VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189 (223)
T ss_pred HHHHHHH-ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcE
Confidence 9999999 9999999999 999999999999999876544
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=227.86 Aligned_cols=179 Identities=17% Similarity=0.172 Sum_probs=136.7
Q ss_pred CeeEEEEcCCc----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~~----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
.+++.+.|+.+ .+|++++|.+ +|++++|+||||||||||||+|.|+. .|++|.++|+|.++..
T Consensus 4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld------------~pt~G~v~i~g~d~~~ 71 (226)
T COG1136 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD------------KPTSGEVLINGKDLTK 71 (226)
T ss_pred EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCceEEECCEEcCc
Confidence 46777877654 6899999999 99999999999999999999999999 9999999999999887
Q ss_pred cccccCCCcceeeeEEEEeccCCCcc----cCC-------cccc--------hHHHHhCChhHHhh-hchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGYL----ADT-------PGFN--------QPSLLKVTKQSLAQ-TFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~l----~Dt-------pg~~--------~~~l~~~~~~~l~~-~~p~~~~~LSgGq 271 (391)
.+... +.....++++++||.++..- .++ ++.. ...+..+++.+... ++|. +|||||
T Consensus 72 l~~~~-~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~---eLSGGq 147 (226)
T COG1136 72 LSEKE-LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPS---ELSGGQ 147 (226)
T ss_pred CCHHH-HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCch---hcCHHH
Confidence 76532 22234578999999976531 111 1111 12233457775555 8899 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh-----hhhhhhccccccccccccc
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF-----QLRTFGTKREGDVRYKVGD 332 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~-----~~~~~~~~~~~~~~~~~~~ 332 (391)
|||++||||+ +++|++++.| |.++...+++++.++.++... +|...-+.++.++.+..++
T Consensus 148 qQRVAIARAL-~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG 218 (226)
T COG1136 148 QQRVAIARAL-INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDG 218 (226)
T ss_pred HHHHHHHHHH-hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCC
Confidence 9999999999 9999999999 889999999999999877543 3333334455555444443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-28 Score=230.02 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=134.3
Q ss_pred CeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 137 ~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
++.+++.|.. ..++++||++| +|++++|+|.|||||||||++|.++. .|++|+|.++|.++.
T Consensus 4 l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le------------~PtsG~v~v~G~di~ 71 (339)
T COG1135 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE------------RPTSGSVFVDGQDLT 71 (339)
T ss_pred EEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC------------CCCCceEEEcCEecc
Confidence 4677777765 46999999999 89999999999999999999999999 999999999999988
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcc----cCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYL----ADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l----~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.++... -+..+++++|+||.|+..- .++ .+. ..+.++.+++.+.++.||. +|||||
T Consensus 72 ~l~~~~--Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~---qLSGGQ 146 (339)
T COG1135 72 ALSEAE--LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPA---QLSGGQ 146 (339)
T ss_pred cCChHH--HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCch---hcCcch
Confidence 776642 2334688999999977542 222 122 2234667888899999999 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
||||+||||| +.+|++++.| ||+...+++++|.+++++...
T Consensus 147 KQRVaIARAL-a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lgl 193 (339)
T COG1135 147 KQRVAIARAL-ANNPKILLCDEATSALDPETTQSILELLKDINRELGL 193 (339)
T ss_pred hhHHHHHHHH-hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCC
Confidence 9999999999 9999999999 999999999999999887554
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-27 Score=224.69 Aligned_cols=185 Identities=21% Similarity=0.271 Sum_probs=144.2
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
..++++++|++..+++++||.+ +|++++|+|||||||||||++|+|+. +|.+|+|+++|.++...+.
T Consensus 4 ~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l------------~p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 4 EVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL------------KPKSGEVLLDGKDIASLSP 71 (258)
T ss_pred EEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC------------CCCCCEEEECCCchhhcCH
Confidence 4578999999999999999999 89999999999999999999999999 9999999999998877665
Q ss_pred ccCCCcceeeeEEEEeccC----CCcccC------Cc--------c-----cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSG----GGYLAD------TP--------G-----FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~----~~~l~D------tp--------g-----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
+. ..+.+++++|.. +..+.| .| . .....+..+++.+++++.-. +|||||
T Consensus 72 ke-----lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~---~LSGGe 143 (258)
T COG1120 72 KE-----LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD---ELSGGE 143 (258)
T ss_pred HH-----HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc---ccChhH
Confidence 43 456777777762 111111 11 1 12334667888888888777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh----hhh--hhhcccccccccccccCcccccC
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF----QLR--TFGTKREGDVRYKVGDMGVQQAE 339 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~e 339 (391)
+||+.||||+ +.+|+++++| |....-.+++++.++.++... .++ .++...|.++.....+.-...+.
T Consensus 144 rQrv~iArAL-aQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 144 RQRVLIARAL-AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHHHHHHHHH-hcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecC
Confidence 9999999999 9999999999 788999999999999866444 222 23556666666655554455555
Q ss_pred Cc
Q 016339 340 PR 341 (391)
Q Consensus 340 ~~ 341 (391)
|.
T Consensus 223 p~ 224 (258)
T COG1120 223 PE 224 (258)
T ss_pred cc
Confidence 54
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-27 Score=218.32 Aligned_cols=158 Identities=22% Similarity=0.220 Sum_probs=129.7
Q ss_pred CCeeEEEEcCCcc----chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVESKL----GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~~~----~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
..+++.+.|+.+. ++++|||++ +|++++|+|+||||||||.++|+|+. +|++|+|.++|..+.
T Consensus 5 ~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~------------~p~~G~I~~~G~~~~ 72 (252)
T COG1124 5 SVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE------------KPSSGSILLDGKPLA 72 (252)
T ss_pred EEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc------------CCCCceEEECCcccC
Confidence 3578899998888 999999999 99999999999999999999999999 999999999997664
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcc---------cCCccc----------chHHHHhCCh-hHHhhhchhHHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYL---------ADTPGF----------NQPSLLKVTK-QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l---------~Dtpg~----------~~~~l~~~~~-~~l~~~~p~~~~~LSgG 270 (391)
.... .+...+.++++||+..+.+ +..|-. ....+..+++ .+.++++|. +||||
T Consensus 73 ~~~~----~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~---eLSGG 145 (252)
T COG1124 73 PKKR----AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH---ELSGG 145 (252)
T ss_pred cccc----chhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch---hcChh
Confidence 3221 1125678999999843321 112222 2345666766 467899999 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
|+||++||||+ ..+|+++|+| |......++++|.+++++...
T Consensus 146 Q~QRiaIARAL-~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~l 193 (252)
T COG1124 146 QRQRIAIARAL-IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGL 193 (252)
T ss_pred HHHHHHHHHHh-ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999 9999999999 889999999999999987655
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-27 Score=224.09 Aligned_cols=162 Identities=22% Similarity=0.254 Sum_probs=124.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc-----
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR----- 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~----- 208 (391)
+.+++++++|++..+|++|||.+ +|++++|+||||||||||+++|+|+. +|++|+|.+.|..
T Consensus 5 i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll------------~p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL------------KPSSGEIKIFGKPVRKRR 72 (254)
T ss_pred EEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------cCCcceEEEccccccccc
Confidence 45689999999768999999999 89999999999999999999999999 9999999988753
Q ss_pred ----ccccccccC---CCcceeeeEEEEec-cCCCcccCCc-----ccchHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 209 ----VGEVSTKSG---RGKHTTRHVSLLPL-SGGGYLADTP-----GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 209 ----v~~v~~~~~---~~~~ttr~i~~v~~-~~~~~l~Dtp-----g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
+++++|+.. .+|-+-..+..+.. ...+ +...+ ......|..+++.++.++.-. +|||||+||+
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g-~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~---~LSGGQ~QRV 148 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKG-WFRRLNKKDKEKVDEALERVGMEDLRDRQIG---ELSGGQKQRV 148 (254)
T ss_pred cCCeEEEcCcccccCCCCCcCHHHHHHccCccccc-ccccccHHHHHHHHHHHHHcCchhhhCCccc---ccCcHHHHHH
Confidence 555555321 11111111111110 0011 11111 234566888999999998777 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.||||| +.+|+++|+| |+.....++++|.+++++..+
T Consensus 149 ~lARAL-~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~t 191 (254)
T COG1121 149 LLARAL-AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKT 191 (254)
T ss_pred HHHHHh-ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 999999 9999999999 899999999999999987433
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-27 Score=218.71 Aligned_cols=175 Identities=17% Similarity=0.235 Sum_probs=136.4
Q ss_pred cCCeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.++++++.| ++..+|++||+.| +||+++|+|||||||||||++|.|+. +|++|+|.++|.++...
T Consensus 4 i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~------------d~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV------------DPTSGEILFNGVQITKL 71 (258)
T ss_pred EEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc------------CCCcceEEecccchhcc
Confidence 3468899999 8889999999999 99999999999999999999999998 99999999999877665
Q ss_pred ccccCCCcceeeeEEEEeccCCCccc-------------CCccc--------------chHHHHhCChhHHhhhchhHHh
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGYLA-------------DTPGF--------------NQPSLLKVTKQSLAQTFPEIKE 265 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~l~-------------Dtpg~--------------~~~~l~~~~~~~l~~~~p~~~~ 265 (391)
..+. .+...++++|+||.++.... .++-+ ....|+.+++.+.+....+
T Consensus 72 ~~k~--lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~--- 146 (258)
T COG3638 72 KGKE--LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS--- 146 (258)
T ss_pred chHH--HHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc---
Confidence 5431 12245789999998654211 11110 1123456677666666666
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh------hhhhhhcccccccc
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF------QLRTFGTKREGDVR 327 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~------~~~~~~~~~~~~~~ 327 (391)
.|||||+|||+||||| +.+|++++.| ||.....++++|++++++... +...++..+|.++.
T Consensus 147 ~LSGGQQQRVaIARaL-~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 147 TLSGGQQQRVAIARAL-VQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII 219 (258)
T ss_pred cCCcchhHHHHHHHHH-hcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhhe
Confidence 9999999999999999 9999999999 899999999999999887654 23344455555444
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-26 Score=220.24 Aligned_cols=151 Identities=19% Similarity=0.272 Sum_probs=115.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc---cccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ---RVGE 211 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~---~v~~ 211 (391)
..+++.+.|+...++++|++.| .|+.++|+|||||||||||++|+|++ .|++|.|.++|. ++..
T Consensus 4 ~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe------------~p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 4 RINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE------------TPDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred eehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC------------CCCCceEEECCEeccchhc
Confidence 3456677788889999999999 89999999999999999999999999 999999999998 4433
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCccc-----------------chHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTPGF-----------------NQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg~-----------------~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
++. ..+++++++|++..+ +.|+-.| ....|..+.++.+.+.||. +||||
T Consensus 72 ~~~-------~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~---QLSGG 141 (345)
T COG1118 72 LAV-------RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA---QLSGG 141 (345)
T ss_pred cch-------hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch---hcChH
Confidence 222 236677777764322 3333111 1233567788899999999 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||+++|||+ +-+|+++++| |..-...+...|.++.+
T Consensus 142 QrQRVALARAL-A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~ 185 (345)
T COG1118 142 QRQRVALARAL-AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHD 185 (345)
T ss_pred HHHHHHHHHHh-hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999 33444444444444433
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-26 Score=210.37 Aligned_cols=160 Identities=17% Similarity=0.194 Sum_probs=133.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++.++++|++..++++|+|.+ +|++++|+||||+||||||++|.|++ +|++|+|+++|.++...++
T Consensus 10 ~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll------------~P~~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 10 EVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL------------RPDKGEILIDGEDIPQLSE 77 (263)
T ss_pred EEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC------------CCCCCeEEEcCcchhccCH
Confidence 4578999999999999999999 99999999999999999999999999 9999999999999888776
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCccc--------c--------hHHHHhCChhHH-hhhchhHHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTPGF--------N--------QPSLLKVTKQSL-AQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg~--------~--------~~~l~~~~~~~l-~~~~p~~~~~LSgGq~q 273 (391)
... . ...++++++||....+ +.||-++ . ...++.+++... ++.||. +|||||++
T Consensus 78 ~~~-~-~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps---ELSGGM~K 152 (263)
T COG1127 78 EEL-Y-EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS---ELSGGMRK 152 (263)
T ss_pred HHH-H-HHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch---hhcchHHH
Confidence 421 1 1346788899874432 4455332 1 122445666555 889999 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
|+++|||+ +.+|+++++| ||.....+.+++.+++.....
T Consensus 153 RvaLARAi-aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~ 197 (263)
T COG1127 153 RVALARAI-ALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL 197 (263)
T ss_pred HHHHHHHH-hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 99999999 9999999999 999999999999999987555
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-26 Score=209.45 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=120.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+..+++.+.|++..+|++|++.| +++++||+|||||||||||++|..+...-. .-..+|+|.++|+++-.-.
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~-------~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP-------GARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred eEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCc-------CceEEEEEEECCeeccCCC
Confidence 34578999999999999999999 899999999999999999999999871100 0223599999998874321
Q ss_pred cccCCCcceeeeEEEEeccCC---CcccCCc-------ccc--------hHHHHhCChh-HHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGG---GYLADTP-------GFN--------QPSLLKVTKQ-SLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~---~~l~Dtp-------g~~--------~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr 274 (391)
... -..++.++++||..+ ..++|+- |.. +..|....+. +..++...-...||||||||
T Consensus 81 ~d~---~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR 157 (253)
T COG1117 81 VDV---VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR 157 (253)
T ss_pred CCH---HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence 111 013466777777532 3344441 111 2222222221 12222222223799999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEFQLRTF 318 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~~~~~~ 318 (391)
++||||+ +.+|+++++| ||.....+-+++.+|+++......++
T Consensus 158 LcIARal-Av~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTH 206 (253)
T COG1117 158 LCIARAL-AVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH 206 (253)
T ss_pred HHHHHHH-hcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeC
Confidence 9999999 9999999999 89999999999999996544333333
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-25 Score=197.12 Aligned_cols=152 Identities=18% Similarity=0.281 Sum_probs=117.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++.+.++|++..- .+++.+ .|++++|+||||||||||+|+|+|++ .|.+|.|+++|++++..++
T Consensus 4 L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~------------~P~~G~i~i~g~d~t~~~P- 68 (231)
T COG3840 4 LDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE------------TPASGEILINGVDHTASPP- 68 (231)
T ss_pred ccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhcc------------CCCCceEEEcCeecCcCCc-
Confidence 4567777776431 112233 79999999999999999999999999 9999999999988755443
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccC------Ccccc---------hHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LAD------TPGFN---------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~D------tpg~~---------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..|-++++||+++.+ +.. .|+.. +..+..+++..+.++.|. +||||||||++
T Consensus 69 ------~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~---~LSGGqRQRvA 139 (231)
T COG3840 69 ------AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG---ELSGGQRQRVA 139 (231)
T ss_pred ------ccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc---ccCchHHHHHH
Confidence 233455556554433 111 24432 233457889999999999 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+|||+ +.+..++++| ||.-+..++.++.++..+.+.
T Consensus 140 LARcl-vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~ 181 (231)
T COG3840 140 LARCL-VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKM 181 (231)
T ss_pred HHHHH-hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCC
Confidence 99999 8888899999 889999999999999887766
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=200.23 Aligned_cols=160 Identities=15% Similarity=0.277 Sum_probs=126.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++...|+..++|++|||++ +|++++|+|+|||||||||++|+|+. ++.+|+|.|+|.++...+.
T Consensus 5 ~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~------------~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV------------RPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred eEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeeEEECCeecCCCCH
Confidence 4578999999999999999999 99999999999999999999999999 8999999999999988776
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc---ccchH--HHHhCChhHHhhhchhHHh-------hcCcccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP---GFNQP--SLLKVTKQSLAQTFPEIKE-------MLKANEPAKCSFN 278 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp---g~~~~--~l~~~~~~~l~~~~p~~~~-------~LSgGq~qr~~ia 278 (391)
... ....++++|+....+ +.++- .+... .-..-.++.....||.+.+ .|||||||.++||
T Consensus 73 ~~r----~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 73 HER----ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred HHH----HhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence 432 346788888763322 22221 01110 0111114556777887664 7999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHh
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREE 312 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~ 312 (391)
||| +.+|+++++| .|.-.+.+.+.+.+++++..
T Consensus 149 RAL-m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g 187 (237)
T COG0410 149 RAL-MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG 187 (237)
T ss_pred HHH-hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC
Confidence 999 9999999999 67889999999999987643
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-25 Score=219.73 Aligned_cols=153 Identities=16% Similarity=0.234 Sum_probs=125.1
Q ss_pred cCCeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.++++.++| ++..+|+++||.+ +|++++|+|||||||||||++|+|+. +|++|+|.++|.++...
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~------------~p~~G~I~~~g~~i~~~ 71 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE------------RITSGEIWIGGRVVNEL 71 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC------------CCCceEEEECCEECCCC
Confidence 3467899999 7788999999999 89999999999999999999999999 99999999999877544
Q ss_pred ccccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
+. ..+.+++++|++..+ +.++- + .....+..+++.++.+++|. +|||||+|
T Consensus 72 ~~-------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LSgGq~Q 141 (356)
T PRK11650 72 EP-------ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR---ELSGGQRQ 141 (356)
T ss_pred CH-------HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh---hCCHHHHH
Confidence 32 125678888774332 11111 0 11233556788888899998 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||||+ +.+|+++++| |+.....+.+.|.++.++
T Consensus 142 RvalARAL-~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~ 183 (356)
T PRK11650 142 RVAMGRAI-VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR 183 (356)
T ss_pred HHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999999 889999999999988765
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-25 Score=198.71 Aligned_cols=173 Identities=20% Similarity=0.176 Sum_probs=127.7
Q ss_pred CCeeEEEEcCCcc--chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc---
Q 016339 136 GYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV--- 209 (391)
Q Consensus 136 g~~~v~~s~~~~~--~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v--- 209 (391)
..++++.+|.... +++++|+.| +|++++++||||||||||+|+++|+. +|..|+|.++|.++
T Consensus 5 ~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~------------~P~~G~i~l~~r~i~gP 72 (259)
T COG4525 5 NVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV------------TPSRGSIQLNGRRIEGP 72 (259)
T ss_pred ehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc------------CcccceEEECCEeccCC
Confidence 4567889998877 999999999 89999999999999999999999999 99999999999866
Q ss_pred ----cccccccCCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCccccccccccccccc
Q 016339 210 ----GEVSTKSGRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 210 ----~~v~~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~ 283 (391)
+-++|..++.++.+ .|+++--+-.+.....-.......+..+++++..++++- +|||||+||+.||||+ .
T Consensus 73 gaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~---qLSGGmrQRvGiARAL-a 148 (259)
T COG4525 73 GAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIW---QLSGGMRQRVGIARAL-A 148 (259)
T ss_pred CccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceE---eecchHHHHHHHHHHh-h
Confidence 33444444444433 233221111110000001122234556788888889998 9999999999999999 9
Q ss_pred CCCcEEEec------CHHHHHHHHHHHHHHHHHHhh--hhhhhhccccc
Q 016339 284 GEPGCVVKG------DWERYQYYFQLLDEIRIREEF--QLRTFGTKREG 324 (391)
Q Consensus 284 ~eP~~lllD------D~~~~~~~~~ll~el~~~~~~--~~~~~~~~~~~ 324 (391)
.+|+.+++| |.-..+.+.++|-++.+...+ .+.+++..+..
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAl 197 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEAL 197 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH
Confidence 999999999 667889999999999877665 23444444433
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-25 Score=218.56 Aligned_cols=153 Identities=15% Similarity=0.253 Sum_probs=125.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 7 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~------------~p~~G~I~~~g~~i~~~~ 74 (351)
T PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE------------KPTEGQIFIDGEDVTHRS 74 (351)
T ss_pred EEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC------------CCCceEEEECCEECCCCC
Confidence 34688999999888999999999 89999999999999999999999999 999999999998775433
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCcc---------------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPG---------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg---------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..++++++++++..+ +.++-. .....+..+++.++.+++|. .|||||+||
T Consensus 75 ~-------~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~---~LSgGq~QR 144 (351)
T PRK11432 75 I-------QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVD---QISGGQQQR 144 (351)
T ss_pred H-------HHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHH
Confidence 2 236688888775432 122211 11223456677788888998 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||||+ +.+|+++++| |+.....+.+.|.++.++
T Consensus 145 VaLARaL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 185 (351)
T PRK11432 145 VALARAL-ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ 185 (351)
T ss_pred HHHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999999 888999999999988764
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-24 Score=212.74 Aligned_cols=157 Identities=18% Similarity=0.220 Sum_probs=125.6
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++++++|.. ..+|+++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 3 ~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~------------~p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 3 KLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------------RPTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECC
Confidence 35788999952 36999999999 89999999999999999999999999 999999999998876
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
..+... .+...+.++++++.+..+ +.++ .+. ....+..+++.+..+.+|. +|||||
T Consensus 71 ~~~~~~--l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~---~LSgGq 145 (343)
T TIGR02314 71 TLSNSE--LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS---NLSGGQ 145 (343)
T ss_pred cCCHHH--HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHH
Confidence 544321 011245788888875432 1111 111 1233556777778888898 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||||+ +.+|+++|+| |+.....++++|.+++++
T Consensus 146 kQRV~IARAL-~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~ 189 (343)
T TIGR02314 146 KQRVAIARAL-ASNPKVLLCDEATSALDPATTQSILELLKEINRR 189 (343)
T ss_pred HHHHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 899999999999999865
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-24 Score=217.65 Aligned_cols=153 Identities=14% Similarity=0.222 Sum_probs=125.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|++ +|++++|+|||||||||||++|+|+. +|++|+|.++|.++...+
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~~~~~~ 72 (353)
T TIGR03265 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE------------RQTAGTIYQGGRDITRLP 72 (353)
T ss_pred EEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCceEEEECCEECCCCC
Confidence 34578999999888999999999 89999999999999999999999999 999999999998775433
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCcc---------------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPG---------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg---------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..++++++++++..+ +.++-. .....+..+++..+++++|. +|||||+||
T Consensus 73 ~-------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~---~LSgGq~QR 142 (353)
T TIGR03265 73 P-------QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPG---QLSGGQQQR 142 (353)
T ss_pred H-------HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChh---hCCHHHHHH
Confidence 2 235678888775432 222111 11234556777888889998 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||||+ +.+|+++++| |+.....+.+.|.++..+
T Consensus 143 vaLARaL-~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 183 (353)
T TIGR03265 143 VALARAL-ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR 183 (353)
T ss_pred HHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999999 888999999999998765
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-24 Score=217.20 Aligned_cols=153 Identities=17% Similarity=0.254 Sum_probs=125.6
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|.+ +|++++|+|||||||||||++|+|+. +|++|+|.++|.++...+
T Consensus 15 L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~------------~p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE------------TPDSGRIMLDGQDITHVP 82 (375)
T ss_pred EEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCCCC
Confidence 45688999999888999999999 89999999999999999999999999 999999999998775433
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCcc---------------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPG---------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg---------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..++++++++++..+ +.++-. .....+..+++.++.+++|. +|||||+||
T Consensus 83 ~-------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~---~LSgGq~QR 152 (375)
T PRK09452 83 A-------ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH---QLSGGQQQR 152 (375)
T ss_pred H-------HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHHHHH
Confidence 2 235678888775432 222211 11223556678888899998 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+||||+ +.+|+++++| |+.....+.+.|.++.++
T Consensus 153 VaLARaL-~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 193 (375)
T PRK09452 153 VAIARAV-VNKPKVLLLDESLSALDYKLRKQMQNELKALQRK 193 (375)
T ss_pred HHHHHHH-hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999999 888999999999998765
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-24 Score=217.29 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=125.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCC--CcceecCccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL--GSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~--G~I~~~g~~v~~ 211 (391)
+.++++.++|++..++++++|++ +|++++|+|||||||||||++|+|+. +|++ |+|+++|.++..
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV------------KAAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCEEEEECCEECCC
Confidence 45688999999888999999999 89999999999999999999999999 9999 999999987753
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+. ..+.++++++++..+ +.++- + .....+..+++.++.+++|. +|||||+
T Consensus 74 ~~~-------~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~---~LSgGq~ 143 (362)
T TIGR03258 74 APP-------HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA---QLSGGMQ 143 (362)
T ss_pred CCH-------HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh---hCCHHHH
Confidence 322 235677888775432 11111 0 11233556677788888898 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||||+ +.+|+++++| |+.....+.+.|.++.++
T Consensus 144 QRvaLARAL-~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~ 186 (362)
T TIGR03258 144 QRIAIARAI-AIEPDVLLLDEPLSALDANIRANMREEIAALHEE 186 (362)
T ss_pred HHHHHHHHH-hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 889999999999998765
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-24 Score=200.98 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=126.9
Q ss_pred CeeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc-cc
Q 016339 137 YEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-VS 213 (391)
Q Consensus 137 ~~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~-v~ 213 (391)
+++++++|.+. .+++++|+.+ +|+.++|+|+||||||||+++|+|+. .|++|.|.++|.++.. .+
T Consensus 6 ~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl------------~p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 6 AENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL------------KPTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred EEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC------------cCCCCEEEECCeeccchhh
Confidence 47788999776 8999999999 79999999999999999999999999 9999999999987653 11
Q ss_pred cccCCCcceeeeEEEEeccCCCcccC-C-----------cc--------cchHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLAD-T-----------PG--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~D-t-----------pg--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
. ....+.+++++|+....+.. | -+ .....+..+++.++.++.|. .|||||+|
T Consensus 74 ~-----~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~---~LSGGqkq 145 (235)
T COG1122 74 L-----LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF---NLSGGQKQ 145 (235)
T ss_pred H-----HHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc---ccCCccee
Confidence 1 11456788888874332211 1 11 12344567788888999999 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
|++||.++ +.+|+++|+| |+..+..+++++.+++.+.
T Consensus 146 RvaIA~vL-a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 146 RVAIAGVL-AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred eHHhhHHH-HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999 9999999999 9999999999999998874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-24 Score=198.27 Aligned_cols=151 Identities=20% Similarity=0.283 Sum_probs=117.8
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~- 69 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE------------RPDSGEILIDGRDVTGVPP- 69 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEcCcCch-
Confidence 578899998888999999999 89999999999999999999999999 9999999999987643221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++- +. ....+..+++....+..+. .|||||+||++
T Consensus 70 ------~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrl~ 140 (213)
T cd03259 70 ------ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH---ELSGGQQQRVA 140 (213)
T ss_pred ------hhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChh---hCCHHHHHHHH
Confidence 124567777653211 11110 00 1122344555555666676 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 141 la~al-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03259 141 LARAL-AREPSLLLLDEPLSALDAKLREELREELKELQRE 179 (213)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999 889999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-24 Score=212.80 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=123.2
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+.
T Consensus 4 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~------------~p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 4 EIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE------------HQTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCH
Confidence 3578899998888999999999 89999999999999999999999999 9999999999987754322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-----------c--------cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-----------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-----------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
..+.++++++++..+ +.++- + .....+..+++.++.+++|. .|||||
T Consensus 72 -------~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~LSgGq 141 (353)
T PRK10851 72 -------RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA---QLSGGQ 141 (353)
T ss_pred -------HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHH
Confidence 124677777764322 11110 0 11223556677778888888 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||||+ +.+|+++++| |+.....+.++|.++.++
T Consensus 142 ~QRvalArAL-~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 185 (353)
T PRK10851 142 KQRVALARAL-AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE 185 (353)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 889999999999998765
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-24 Score=214.73 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=123.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||++ +|++++|+|||||||||||++|+|+. +|++|+|+++|.++...+
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~------------~p~~G~I~~~g~~i~~~~ 71 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE------------DITSGDLFIGEKRMNDVP 71 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCCCC
Confidence 34678999999888999999999 89999999999999999999999999 999999999998775432
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..+++++++++...+ +.++- +. ....+..+++.++.++.|. .|||||+||
T Consensus 72 ~-------~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~---~LSgGq~QR 141 (369)
T PRK11000 72 P-------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPK---ALSGGQRQR 141 (369)
T ss_pred H-------hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChh---hCCHHHHHH
Confidence 2 124678888764322 11111 11 1223455677777788888 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||||+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 142 vaLAraL-~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~ 182 (369)
T PRK11000 142 VAIGRTL-VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182 (369)
T ss_pred HHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999 888999999999998764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-23 Score=196.60 Aligned_cols=156 Identities=18% Similarity=0.229 Sum_probs=119.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL------------RPDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccChh
Confidence 578899998888999999999 99999999999999999999999999 99999999999876543221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC--------ccc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT--------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt--------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
. .....+.++++++....+ +.++ .+. ....+..+++....+..+. .|||||+||+
T Consensus 71 ~--~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrv 145 (235)
T cd03261 71 E--LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA---ELSGGMKKRV 145 (235)
T ss_pred h--HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHHH
Confidence 0 001234577777653221 1111 001 1112344555555666777 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 146 ~ia~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (235)
T cd03261 146 ALARAL-ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE 185 (235)
T ss_pred HHHHHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999999 9999999999 889999999999998764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-24 Score=209.38 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=120.8
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++....
T Consensus 8 i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~------------~p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT------------HPDAGSISLCGEPVPSRA 75 (306)
T ss_pred EEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEecccch
Confidence 34688999999889999999999 89999999999999999999999999 999999999998764322
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.. ..+.++++++....+ +.++ .+.. ...+..+++....+..+. .||+||+||
T Consensus 76 ~~------~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qr 146 (306)
T PRK13537 76 RH------ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVG---ELSGGMKRR 146 (306)
T ss_pred HH------HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchh---hCCHHHHHH
Confidence 11 345678887764322 1111 1111 122334555555566666 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +++|+++++| |+.....+++++.+++++
T Consensus 147 l~la~aL-~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 187 (306)
T PRK13537 147 LTLARAL-VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR 187 (306)
T ss_pred HHHHHHH-hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 899999999999998654
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-24 Score=197.77 Aligned_cols=157 Identities=21% Similarity=0.302 Sum_probs=118.4
Q ss_pred CeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~ 70 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD------------RPTSGEVRVDGTDISK 70 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc------------CCCceeEEECCEehhh
Confidence 5788899976 67999999999 89999999999999999999999999 9999999999987654
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+.... .....+.++++++....+ +.++ .+. ....+..+++....+..+. .|||||+
T Consensus 71 ~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~ 146 (218)
T cd03255 71 LSEKEL-AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS---ELSGGQQ 146 (218)
T ss_pred cchhHH-HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChh---hcCHHHH
Confidence 332100 000124567776653211 1111 010 1123445566666667777 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 147 qrv~la~al-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~ 189 (218)
T cd03255 147 QRVAIARAL-ANDPKIILADEPTGNLDSETGKEVMELLRELNKE 189 (218)
T ss_pred HHHHHHHHH-ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 889999999999998653
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-24 Score=207.95 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=121.4
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+...+++++|+ ...+|++|||.+ +|+++||+||||||||||||+|+|+. .|++|+|.++|.++..-
T Consensus 5 i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~------------~p~~G~i~i~G~~~~~~ 72 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL------------KPTSGEILVLGYDVVKE 72 (293)
T ss_pred eeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEEcCEeCccC
Confidence 34578999999 699999999999 89999999999999999999999999 99999999999765332
Q ss_pred ccccCCCcceeeeEEEEeccCCCc--------------ccCCc-----ccchHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY--------------LADTP-----GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~--------------l~Dtp-----g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
+.. ..++++++++....+ +...+ ......+..+++....+.+.. .||+||||
T Consensus 73 ~~~------~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~lS~G~kq 143 (293)
T COG1131 73 PAK------VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVR---TLSGGMKQ 143 (293)
T ss_pred HHH------HHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchh---hcCHHHHH
Confidence 111 234566666653221 11111 122344556666654455555 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
|+.||.++ +++|+++|+| ||.....++++|.++..+.
T Consensus 144 rl~ia~aL-~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g 186 (293)
T COG1131 144 RLSIALAL-LHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186 (293)
T ss_pred HHHHHHHH-hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999 9999999999 9999999999999999876
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-24 Score=198.53 Aligned_cols=148 Identities=16% Similarity=0.202 Sum_probs=114.9
Q ss_pred CeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~ 70 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE------------RPTSGEVLVDGEPVTG 70 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECcc
Confidence 5788999987 67999999999 99999999999999999999999999 8999999999976532
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
. .+.++++++....+ +.++- + .....+..+++.+..+..+. .|||||+
T Consensus 71 ~----------~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~ 137 (220)
T cd03293 71 P----------GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPH---QLSGGMR 137 (220)
T ss_pred c----------cCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcc---cCCHHHH
Confidence 1 23455665542211 11110 0 11123345556556666676 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 138 qrl~la~al-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 180 (220)
T cd03293 138 QRVALARAL-AVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180 (220)
T ss_pred HHHHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999 889999999999998654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-24 Score=198.06 Aligned_cols=152 Identities=14% Similarity=0.151 Sum_probs=118.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+.
T Consensus 3 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~- 69 (220)
T cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL------------KPTSGRATVAGHDVVREPR- 69 (220)
T ss_pred EEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEecCcChH-
Confidence 578899998888999999999 89999999999999999999999999 9999999999876643111
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
...+.++++++....+ +.++- +. ....+..+++....+..+. .|||||+||++
T Consensus 70 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qr~~ 141 (220)
T cd03265 70 -----EVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK---TYSGGMRRRLE 141 (220)
T ss_pred -----HHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh---hCCHHHHHHHH
Confidence 1224566766653211 11110 11 1123445566666677777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 142 la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (220)
T cd03265 142 IARSL-VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180 (220)
T ss_pred HHHHH-hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-24 Score=214.30 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=123.8
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|.+ +|++++|+|||||||||||++|+|+. +|++|+|+++|.++...+
T Consensus 20 l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~------------~p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE------------QPTAGQIMLDGVDLSHVP 87 (377)
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCCCC
Confidence 44688999998888999999999 89999999999999999999999999 999999999998765432
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCcc---------------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPG---------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg---------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..+++++++|++..+ +.++-. .....+..+++.++.+++|. .|||||+||
T Consensus 88 ~-------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~---~LSgGq~QR 157 (377)
T PRK11607 88 P-------YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH---QLSGGQRQR 157 (377)
T ss_pred H-------HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHH
Confidence 2 235678888775432 222211 11233456677788888998 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+||||+ +.+|+++++| |......+.+.+.++..+
T Consensus 158 VaLARAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 198 (377)
T PRK11607 158 VALARSL-AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER 198 (377)
T ss_pred HHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999999 788888888888887654
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-24 Score=197.62 Aligned_cols=156 Identities=21% Similarity=0.317 Sum_probs=118.2
Q ss_pred CeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++....
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~ 71 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE------------KPTRGKIRFNGQDLTRLR 71 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEehhhcC
Confidence 5788999964 36999999999 99999999999999999999999999 999999999998765432
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
... .....+.++++++....+ +.++- +. ....+..+++.+..+..|. .|||||+||
T Consensus 72 ~~~--~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qr 146 (216)
T TIGR00960 72 GRE--IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPM---QLSGGEQQR 146 (216)
T ss_pred hhH--HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHHHH
Confidence 210 000224567777663211 11110 11 1123445666666677777 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....+.+++.++++.
T Consensus 147 v~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (216)
T TIGR00960 147 VAIARAI-VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR 187 (216)
T ss_pred HHHHHHH-hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC
Confidence 9999999 9999999999 889999999999988643
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-23 Score=195.35 Aligned_cols=151 Identities=17% Similarity=0.267 Sum_probs=118.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~v~~~g~~~~~~~~- 69 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE------------EPTSGRIYIGGRDVTDLPP- 69 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCCc-
Confidence 578899998888999999999 99999999999999999999999999 8999999999987643322
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++ .++. ...+..+++....+..+. .|||||+||++
T Consensus 70 ------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qr~~ 140 (213)
T cd03301 70 ------KDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPK---QLSGGQRQRVA 140 (213)
T ss_pred ------ccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChh---hCCHHHHHHHH
Confidence 124577777653211 1111 0111 122344556666667776 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++++| |+.....+.+++.++..+
T Consensus 141 laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03301 141 LGRAI-VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR 179 (213)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999 889999999999998764
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-24 Score=210.92 Aligned_cols=154 Identities=15% Similarity=0.150 Sum_probs=120.8
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|+++||++ +|++++|+|||||||||||++|+|+. +|++|+|.++|.++....
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~------------~p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT------------SPDAGKITVLGVPVPARA 109 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCceEEEECCEECCcch
Confidence 44688999999989999999999 89999999999999999999999999 999999999998764322
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ...+.++++++....+ +.++ .+. ....+..+++.+..+..+. .|||||+||
T Consensus 110 ~------~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---~LS~G~kqr 180 (340)
T PRK13536 110 R------LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVS---DLSGGMKRR 180 (340)
T ss_pred H------HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChh---hCCHHHHHH
Confidence 1 1345677777763321 1111 011 0122334455555666666 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +++|+++|+| |+.....++++|.++...
T Consensus 181 v~lA~aL-~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~ 221 (340)
T PRK13536 181 LTLARAL-INDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221 (340)
T ss_pred HHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 899999999999998754
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-23 Score=198.17 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=118.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.....
T Consensus 4 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 4 EVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE------------RPDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCCc
Confidence 4578999998888999999999 99999999999999999999999999 8999999999987643221
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCc-------c------------cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTP-------G------------FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
..+.++++++.... .+.++- + .....+..+++..+.+..+. .|||||
T Consensus 72 -------~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~ 141 (239)
T cd03296 72 -------QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA---QLSGGQ 141 (239)
T ss_pred -------cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh---hCCHHH
Confidence 12346666665221 111110 0 01122445566666667777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 142 ~qrl~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 185 (239)
T cd03296 142 RQRVALARAL-AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE 185 (239)
T ss_pred HHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999 889999999999998764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-23 Score=192.01 Aligned_cols=153 Identities=21% Similarity=0.317 Sum_probs=116.9
Q ss_pred CeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
++++.++|++ ..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~ 69 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL------------GPTSGEVLVDGKDLTKLS 69 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEEcccCC
Confidence 4678889987 77999999999 89999999999999999999999999 999999999998764332
Q ss_pred cccCCCcceeeeEEEEeccCCC-----cccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG-----YLADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~-----~l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
.. ...+.++++++.... .+.++ .++. ...+..+++....+..+. .|||||+|
T Consensus 70 ~~-----~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~q 141 (211)
T cd03225 70 LK-----ELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPF---TLSGGQKQ 141 (211)
T ss_pred HH-----HHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcc---cCCHHHHH
Confidence 11 123456677665311 11111 0111 112344566556666676 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 142 rv~laral-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 183 (211)
T cd03225 142 RVAIAGVL-AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE 183 (211)
T ss_pred HHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 99999999 9999999999 889999999999988654
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-23 Score=191.06 Aligned_cols=150 Identities=15% Similarity=0.209 Sum_probs=117.2
Q ss_pred CeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
+++++++|++ ..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.. .
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~--~ 67 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI------------KESSGSILLNGKPIKA--K 67 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEhhh--H
Confidence 4678889987 78999999999 99999999999999999999999999 9999999999976532 0
Q ss_pred ccCCCcceeeeEEEEeccCC-----CcccCCc-------c----cchHHHHhCChhHHhhhchhHHhhcCcccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGG-----GYLADTP-------G----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~-----~~l~Dtp-------g----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
...+.++++++... ..+.++- + .....+..+++.+..+..|. .|||||+||++||
T Consensus 68 ------~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~la 138 (205)
T cd03226 68 ------ERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL---SLSGGQKQRLAIA 138 (205)
T ss_pred ------HhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCch---hCCHHHHHHHHHH
Confidence 02234666666521 1111110 0 11233556666667777787 9999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 139 ral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 175 (205)
T cd03226 139 AAL-LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175 (205)
T ss_pred HHH-HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC
Confidence 999 9999999999 889999999999988643
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-24 Score=186.34 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=127.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc--cc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV--GE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v--~~ 211 (391)
+.++.+.++||..++|-||+++. +|++++++||||+||||||+.|.-+. .|.+|+..+.+... +.
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle------------~p~sg~l~ia~~~fd~s~ 70 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE------------MPRSGTLNIAGNHFDFSK 70 (242)
T ss_pred eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHh------------CCCCCeEEeccccccccc
Confidence 34578899999999999999999 89999999999999999999999988 89999988876543 22
Q ss_pred cccccCCCcceeeeEEEEeccCCCc--------ccCCc----ccc--------hHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY--------LADTP----GFN--------QPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~--------l~Dtp----g~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.+.. ......+++++++++.++.+ +++.| |.. .+.+..+.+..++++||- .|||||
T Consensus 71 ~~~~-k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl---hlsggq 146 (242)
T COG4161 71 TPSD-KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL---HLSGGQ 146 (242)
T ss_pred CccH-HHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce---ecccch
Confidence 2111 12233557788888877654 22223 221 233456677888999999 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+||++||||+ +.+|.++++| ||+...++.++++|+....
T Consensus 147 qqrvaiaral-mmkpqvllfdeptaaldpeitaqvv~iikel~~tg 191 (242)
T COG4161 147 QQRVAIARAL-MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG 191 (242)
T ss_pred hhhHHHHHHH-hcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcC
Confidence 9999999999 9999999999 8999999999999987543
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-23 Score=195.78 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=117.7
Q ss_pred CeeEEEEcCCc----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~~----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++. .++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~ 71 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL------------EPDAGFATVDGFDVVK 71 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCCceEEECCEEccc
Confidence 57889999876 7999999999 89999999999999999999999999 9999999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+. ...+.++++++....+ +.++. +. ....+..+++.+..+..+. .|||||+
T Consensus 72 ~~~------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~ 142 (218)
T cd03266 72 EPA------EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG---GFSTGMR 142 (218)
T ss_pred CHH------HHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhh---hcCHHHH
Confidence 111 1234567777653211 11110 00 1123445566666666666 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 143 qrv~laral-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (218)
T cd03266 143 QKVAIARAL-VHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL 185 (218)
T ss_pred HHHHHHHHH-hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 999999999 9999999999 889999999999998643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-23 Score=183.93 Aligned_cols=152 Identities=22% Similarity=0.267 Sum_probs=123.8
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCccee
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~tt 223 (391)
+.-.+|++|++.+ +|+.++|||||||||||||-.|+|+. .|++|+|.+.|++...+.++ ++.....
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd------------~~ssGeV~l~G~~L~~ldEd-~rA~~R~ 87 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD------------DPSSGEVRLLGQPLHKLDED-ARAALRA 87 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC------------CCCCceEEEcCcchhhcCHH-HHHHhhc
Confidence 3446899999999 89999999999999999999999999 99999999999998877764 3333445
Q ss_pred eeEEEEeccCCCccc----CC---c----c--------cchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC
Q 016339 224 RHVSLLPLSGGGYLA----DT---P----G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 224 r~i~~v~~~~~~~l~----Dt---p----g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~ 284 (391)
++++++||.|..... ++ | | .....+..+++.+-+..||. +|||||||||+||||+ ..
T Consensus 88 ~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~---qLSGGEQQRVAiARAf-a~ 163 (228)
T COG4181 88 RHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA---QLSGGEQQRVALARAF-AG 163 (228)
T ss_pred cceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCcc---ccCchHHHHHHHHHHh-cC
Confidence 889999998653210 00 1 1 12234667788888888999 9999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 285 EPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.|++++.| |...-+.+.+++-.++.+...
T Consensus 164 ~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~ 198 (228)
T COG4181 164 RPDVLFADEPTGNLDRATGDKIADLLFALNRERGT 198 (228)
T ss_pred CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCc
Confidence 99999999 678889999999998876555
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-23 Score=196.10 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=116.3
Q ss_pred CeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++....
T Consensus 3 ~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~ 70 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL------------RPTSGTAYINGYSIRTDR 70 (220)
T ss_pred EEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEecccch
Confidence 4678889976 67999999999 89999999999999999999999999 999999999997764311
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
....+.++++++....+ +.++- +. ....+..+++.+..+..+. .||+||+||
T Consensus 71 ------~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qr 141 (220)
T cd03263 71 ------KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRAR---TLSGGMKRK 141 (220)
T ss_pred ------HHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhh---hCCHHHHHH
Confidence 11234567777653211 11110 11 1122334555556666666 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 142 v~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 181 (220)
T cd03263 142 LSLAIAL-IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK 181 (220)
T ss_pred HHHHHHH-hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999 9999999999 88999999999998865
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-23 Score=192.29 Aligned_cols=154 Identities=14% Similarity=0.214 Sum_probs=117.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV------------KPDSGKILLDGQDITKLPMH 70 (232)
T ss_pred EEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEecccCCHh
Confidence 578899998888999999999 99999999999999999999999999 99999999999876443221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
.. ....++++++....+ +.++ .+. ....+..+++....+..+. .|||||+||++
T Consensus 71 ~~----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl~ 143 (232)
T cd03218 71 KR----ARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKAS---SLSGGERRRVE 143 (232)
T ss_pred HH----HhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHHHHHH
Confidence 10 113466666653211 1111 010 1122334555555666666 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.+++.++...
T Consensus 144 la~al-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 182 (232)
T cd03218 144 IARAL-ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182 (232)
T ss_pred HHHHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 99999 9999999999 889999999999998653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-23 Score=206.82 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=120.0
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
.|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+... ....
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~------------~p~~G~I~i~G~~i~~~~~~~-~~~~ 68 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI------------EPTAGQIFIDGENIMKQSPVE-LREV 68 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC------------CCCceEEEECCEECCcCCHHH-HHHH
Confidence 467778999999999 99999999999999999999999999 999999999998876543321 0000
Q ss_pred eeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccccccccc
Q 016339 222 TTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 222 ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh 282 (391)
..++++++++....+ +.++- ++ ....+..+++..+.+.+|. .|||||+||++||||+
T Consensus 69 rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~---~LSGGq~QRV~lARAL- 144 (363)
T TIGR01186 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---ELSGGMQQRVGLARAL- 144 (363)
T ss_pred HhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh---hCCHHHHHHHHHHHHH-
Confidence 145788888875432 11211 11 1233556677778888898 9999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+.+|+++|+| |+.....+++++.++...
T Consensus 145 ~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~ 178 (363)
T TIGR01186 145 AAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178 (363)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 899999999999998764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-24 Score=188.21 Aligned_cols=163 Identities=17% Similarity=0.207 Sum_probs=134.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+..+.+.+.|+...+|++||+.- +|.++.|+|.|||||||+|++|.-+. .|+.|.|+++|..+....
T Consensus 7 l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE------------~P~~G~I~v~geei~~k~ 74 (256)
T COG4598 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE------------KPSAGSIRVNGEEIRLKR 74 (256)
T ss_pred eehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc------------CCCCceEEECCeEEEeee
Confidence 34566778999999999999999 89999999999999999999999999 999999999999886655
Q ss_pred cccCCCcc--------eeeeEEEEeccCCCc--------ccCCcc------------cchHHHHhCChhHHhhhchhHHh
Q 016339 214 TKSGRGKH--------TTRHVSLLPLSGGGY--------LADTPG------------FNQPSLLKVTKQSLAQTFPEIKE 265 (391)
Q Consensus 214 ~~~~~~~~--------ttr~i~~v~~~~~~~--------l~Dtpg------------~~~~~l~~~~~~~l~~~~p~~~~ 265 (391)
...|.... .+..++++||.++.+ +++.|- ..+..+..+++.+-.+.||.
T Consensus 75 ~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~--- 151 (256)
T COG4598 75 DKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA--- 151 (256)
T ss_pred CCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc---
Confidence 54442211 234578888887765 222231 12334667888888889999
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.|||||+||++||||| +.+|.++++| ||+-..++++.+.+|.++.++
T Consensus 152 ~LSGGQQQR~aIARaL-ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrT 204 (256)
T COG4598 152 HLSGGQQQRVAIARAL-AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRT 204 (256)
T ss_pred ccCchHHHHHHHHHHH-hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCe
Confidence 9999999999999999 9999999999 899999999999999887665
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-23 Score=193.30 Aligned_cols=156 Identities=18% Similarity=0.195 Sum_probs=117.2
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
+++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.......
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~~ 69 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE------------KFDSGQVYLNGKETPPLNSKK 69 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEccccchhh
Confidence 57888998888999999999 99999999999999999999999999 999999999998764332210
Q ss_pred CCCcceeeeEEEEeccCCC----cccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCccccccccc
Q 016339 217 GRGKHTTRHVSLLPLSGGG----YLADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 217 ~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
. .....+.++++++.... .+.++- + .....+..+++.+..+..+. .||+||+||++|
T Consensus 70 ~-~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~lS~G~~qr~~l 145 (206)
T TIGR03608 70 A-SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIY---ELSGGEQQRVAL 145 (206)
T ss_pred H-HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChh---hCCHHHHHHHHH
Confidence 0 00123456776665321 111110 0 01122444566666666666 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 146 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 183 (206)
T TIGR03608 146 ARAI-LKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE 183 (206)
T ss_pred HHHH-HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc
Confidence 9999 9999999999 889999999999987643
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-23 Score=188.77 Aligned_cols=150 Identities=18% Similarity=0.195 Sum_probs=117.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++... .
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~-~- 68 (208)
T cd03268 3 TNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI------------KPDSGEITFDGKSYQKN-I- 68 (208)
T ss_pred EEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCCcccch-H-
Confidence 478889998888999999999 99999999999999999999999999 89999999999866432 1
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-------cc----cchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-------PG----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
...+.+++++++...+ +.++ .+ .....+..+++.+..+..+. .|||||+||++||+|
T Consensus 69 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~la~a 140 (208)
T cd03268 69 -----EALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK---GFSLGMKQRLGIALA 140 (208)
T ss_pred -----HHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHh---hCCHHHHHHHHHHHH
Confidence 1234566776653211 1111 01 11223445566666667676 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+ +.+|+++|+| |+.....+.+++.++.+
T Consensus 141 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (208)
T cd03268 141 L-LGNPDLLILDEPTNGLDPDGIKELRELILSLRD 174 (208)
T ss_pred H-hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 9 9999999999 88899999999998875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-23 Score=193.20 Aligned_cols=156 Identities=19% Similarity=0.275 Sum_probs=117.5
Q ss_pred CeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|++ ..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~ 70 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV------------EPTSGSVLIDGTDINKLKG 70 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCCceEEECCEeccccCH
Confidence 5788999987 78999999999 99999999999999999999999999 8999999999987654331
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc---------------c--------cchHHHHhCChhHHhhhchhHHhhc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP---------------G--------FNQPSLLKVTKQSLAQTFPEIKEML 267 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp---------------g--------~~~~~l~~~~~~~l~~~~p~~~~~L 267 (391)
... ....+.++++++....+ +.++- + .....+..+++....+..+. .|
T Consensus 71 ~~~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~L 145 (241)
T cd03256 71 KAL--RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD---QL 145 (241)
T ss_pred hHH--HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc---cC
Confidence 000 00123466666553211 11110 0 01122344556556666666 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 146 S~G~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 193 (241)
T cd03256 146 SGGQQQRVAIARAL-MQQPKLILADEPVASLDPASSRQVMDLLKRINRE 193 (241)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999 889999999999998754
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-23 Score=194.41 Aligned_cols=156 Identities=17% Similarity=0.270 Sum_probs=117.6
Q ss_pred CeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++| ++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.....
T Consensus 4 ~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~~~~ 71 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL------------TPSRGQVRIAGEDVNRLRG 71 (214)
T ss_pred EEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEcccCCH
Confidence 57888999 4668999999999 89999999999999999999999999 8999999999987754322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.. .....+.++++++....+ +.++- ++ ....+..+++.+..+..|. .|||||+||+
T Consensus 72 ~~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl 146 (214)
T TIGR02673 72 RQ--LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE---QLSGGEQQRV 146 (214)
T ss_pred HH--HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHHHHH
Confidence 10 001234577777653211 11110 11 1122334555555566666 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 147 ~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (214)
T TIGR02673 147 AIARAI-VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR 186 (214)
T ss_pred HHHHHH-hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 999999 9999999999 889999999999998653
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-23 Score=199.08 Aligned_cols=148 Identities=19% Similarity=0.237 Sum_probs=115.0
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++....
T Consensus 4 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~-- 69 (255)
T PRK11248 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV------------PYQHGSITLDGKPVEGPG-- 69 (255)
T ss_pred EEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCC--
Confidence 578899998888999999999 89999999999999999999999999 999999999997763211
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..++++++....+ +.++ .+. ....+..+++....+..|. .|||||+||++
T Consensus 70 --------~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LSgGq~qrl~ 138 (255)
T PRK11248 70 --------AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIW---QLSGGQRQRVG 138 (255)
T ss_pred --------CcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChh---hCCHHHHHHHH
Confidence 1245555542211 1111 011 1223445566666667777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+++ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 139 laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 139 IARAL-AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred HHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998543
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-23 Score=193.53 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=114.7
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.. .
T Consensus 3 ~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~---~ 67 (210)
T cd03269 3 VENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII------------LPDSGEVLFDGKPLDI---A 67 (210)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCCchhH---H
Confidence 467888998888999999999 99999999999999999999999999 8999999999976532 0
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++- + .....+..+++....+..+. .|||||+||++
T Consensus 68 ------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl~ 138 (210)
T cd03269 68 ------ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVE---ELSKGNQQKVQ 138 (210)
T ss_pred ------HHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHh---hCCHHHHHHHH
Confidence 123456666553211 11110 0 01122334555555666666 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 139 la~al-~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~ 177 (210)
T cd03269 139 FIAAV-IHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177 (210)
T ss_pred HHHHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 99999 9999999999 888999999999987643
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-23 Score=209.23 Aligned_cols=154 Identities=16% Similarity=0.234 Sum_probs=122.6
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||.+ +|++++|+|||||||||||++|+|+. +|++|+|+++|.++...+.
T Consensus 5 ~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll------------~p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 5 DVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL------------TPTAGTVLVAGDDVEALSA 72 (402)
T ss_pred EEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC------------CCCCcEEEECCEEcCcCCH
Confidence 4578999999999999999999 99999999999999999999999999 9999999999987754332
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC------c-------------ccchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT------P-------------GFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt------p-------------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.. ..+.++++++....+ +.++ | ......+..+++.++.++.+. .|||||
T Consensus 73 ~~-----~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~---~LSgGe 144 (402)
T PRK09536 73 RA-----ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT---SLSGGE 144 (402)
T ss_pred HH-----HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh---hCCHHH
Confidence 11 234567776653221 1110 0 011234556677777777777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||||+ +++|+++|+| |+.....++++|.++.++
T Consensus 145 rQRv~IArAL-~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~ 188 (402)
T PRK09536 145 RQRVLLARAL-AQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188 (402)
T ss_pred HHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 889999999999999753
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-23 Score=196.11 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=118.6
Q ss_pred CeeEEEEcCCc----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~~----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++. .++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~ 71 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE------------RPTSGSVLVDGTDLTL 71 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEccc
Confidence 57888999766 7999999999 99999999999999999999999999 9999999999987654
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+... .....+.++++++....+ +.++- ++ ....+..+++.+..+..+. .|||||+
T Consensus 72 ~~~~~--~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~ 146 (233)
T cd03258 72 LSGKE--LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPA---QLSGGQK 146 (233)
T ss_pred CCHHH--HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChh---hCCHHHH
Confidence 32110 000134567777663221 11110 11 1122344566666666666 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 147 qrv~la~al-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~ 189 (233)
T cd03258 147 QRVGIARAL-ANNPKVLLCDEATSALDPETTQSILALLRDINRE 189 (233)
T ss_pred HHHHHHHHH-hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999 889999999999998765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-23 Score=199.75 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=119.0
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. .|++|+|+++|.++.....
T Consensus 6 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 6 DLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI------------SPDRGKITVLGEPVPSRAR 73 (303)
T ss_pred EEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECcccHH
Confidence 4578999999888999999999 89999999999999999999999999 9999999999987642111
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
...+.++++++....+ +.++ .+.. ...+..+++....+..+. .|||||+||+
T Consensus 74 ------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~---~LSgG~~qrv 144 (303)
T TIGR01288 74 ------LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVA---LLSGGMKRRL 144 (303)
T ss_pred ------HHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchh---hCCHHHHHHH
Confidence 1235577777763221 1111 0111 112334555555666666 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 145 ~la~al-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 184 (303)
T TIGR01288 145 TLARAL-INDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 184 (303)
T ss_pred HHHHHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 999999 9999999999 899999999999998653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-23 Score=193.76 Aligned_cols=156 Identities=17% Similarity=0.248 Sum_probs=117.6
Q ss_pred CeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|++ ..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 3 ~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~ 70 (214)
T cd03292 3 FINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE------------LPTSGTIRVNGQDVSDLRG 70 (214)
T ss_pred EEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcccCCH
Confidence 4788899964 57999999999 99999999999999999999999999 9999999999987654321
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
... ....+.++++++....+ +.++- +. ....+..+++....+..|. .|||||+||+
T Consensus 71 ~~~--~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv 145 (214)
T cd03292 71 RAI--PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPA---ELSGGEQQRV 145 (214)
T ss_pred HHH--HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh---hcCHHHHHHH
Confidence 100 01234577777663221 11110 00 1122344566666666777 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 146 ~laral-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 185 (214)
T cd03292 146 AIARAI-VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA 185 (214)
T ss_pred HHHHHH-HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc
Confidence 999999 9999999999 889999999999988643
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-23 Score=191.28 Aligned_cols=147 Identities=21% Similarity=0.275 Sum_probs=112.9
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~---- 65 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL------------KPTSGSIRVFGKPLEK---- 65 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCCEEEECCccHHH----
Confidence 467888998878999999999 99999999999999999999999999 9999999999875421
Q ss_pred cCCCcceeeeEEEEeccCCC------cccCC-------------------cccchHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 216 SGRGKHTTRHVSLLPLSGGG------YLADT-------------------PGFNQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~------~l~Dt-------------------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
..+.+++++++... .+.++ .......+..+++....+..+. .||||
T Consensus 66 ------~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG 136 (213)
T cd03235 66 ------ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG---ELSGG 136 (213)
T ss_pred ------HHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc---cCCHH
Confidence 11223444433110 00000 0111223445566666677777 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 137 ~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 180 (213)
T cd03235 137 QQQRVLLARAL-VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180 (213)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 88999999999999865
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-23 Score=187.16 Aligned_cols=138 Identities=22% Similarity=0.310 Sum_probs=114.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++......
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~------------~~~~G~v~~~g~~~~~~~~~ 69 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL------------KPSSGEILLDGKDLASLSPK 69 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCcCCHH
Confidence 467888998878999999999 99999999999999999999999999 99999999999876533221
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
. ....++++++ .+..+++.+..+..+. .||+||+||++||+|+ +.+|+++|+|
T Consensus 70 ~-----~~~~i~~~~q---------------~l~~~gl~~~~~~~~~---~LS~G~~qrl~laral-~~~p~llllDEP~ 125 (180)
T cd03214 70 E-----LARKIAYVPQ---------------ALELLGLAHLADRPFN---ELSGGERQRVLLARAL-AQEPPILLLDEPT 125 (180)
T ss_pred H-----HHHHHhHHHH---------------HHHHcCCHhHhcCCcc---cCCHHHHHHHHHHHHH-hcCCCEEEEeCCc
Confidence 0 1223444443 4556677766677777 9999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.+++.+++.+
T Consensus 126 ~~LD~~~~~~~~~~l~~~~~~ 146 (180)
T cd03214 126 SHLDIAHQIELLELLRRLARE 146 (180)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999998664
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-23 Score=194.18 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=116.7
Q ss_pred CeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|+ +..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV------------EPSSGSILLEGTDITKLRG 71 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCccEEEECCEEhhhCCH
Confidence 578889997 678999999999 99999999999999999999999999 9999999999977654321
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------------------c----cchHHHHhCChhHHhhhchhHHhhc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------------------G----FNQPSLLKVTKQSLAQTFPEIKEML 267 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------------------g----~~~~~l~~~~~~~l~~~~p~~~~~L 267 (391)
... ....+.++++++....+ +.++- . .....+..+++....+..+. .|
T Consensus 72 ~~~--~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~L 146 (243)
T TIGR02315 72 KKL--RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD---QL 146 (243)
T ss_pred HHH--HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc---cC
Confidence 100 00123456666542211 11110 0 01122344556556666666 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 147 SgG~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (243)
T TIGR02315 147 SGGQQQRVAIARAL-AQQPDLILADEPIASLDPKTSKQVMDYLKRINKE 194 (243)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999 889999999999998654
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-23 Score=198.06 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=121.2
Q ss_pred cCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcce
Q 016339 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~t 222 (391)
.+...+++++||++ +|++++|+|-||||||||+++|.++. +|++|+|+++|.++..++... +....
T Consensus 38 tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi------------ept~G~ilv~g~di~~~~~~~-Lr~~R 104 (386)
T COG4175 38 TGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI------------EPTRGEILVDGKDIAKLSAAE-LRELR 104 (386)
T ss_pred hCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC------------CCCCceEEECCcchhcCCHHH-HHHHH
Confidence 34456889999999 89999999999999999999999999 999999999999887666532 11222
Q ss_pred eeeEEEEeccCCCc----ccCCcc---------------cchHHHHhCChhHHhhhchhHHhhcCccccccccccccccc
Q 016339 223 TRHVSLLPLSGGGY----LADTPG---------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 223 tr~i~~v~~~~~~~----l~Dtpg---------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~ 283 (391)
++.++++||.|+.+ +.++.+ .....+..+++....++||. +|||||||||.+|||+ +
T Consensus 105 r~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~---eLSGGMqQRVGLARAl-a 180 (386)
T COG4175 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN---ELSGGMQQRVGLARAL-A 180 (386)
T ss_pred hhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc---cccchHHHHHHHHHHH-c
Confidence 35677777776554 223221 12345778899999999999 9999999999999999 9
Q ss_pred CCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 284 GEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 284 ~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.+|+++++| ||--...+++-|.++....++
T Consensus 181 ~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~K 216 (386)
T COG4175 181 NDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK 216 (386)
T ss_pred cCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCC
Confidence 999999999 776667777767676655555
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-23 Score=195.75 Aligned_cols=153 Identities=17% Similarity=0.221 Sum_probs=116.0
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 3 VRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL------------RPTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred eeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCceEEECCEECCCCCHH
Confidence 578889998878999999999 89999999999999999999999999 89999999999876433221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC--------cc-----------------cchHHHHhCChhHHhhhchhHHhh
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT--------PG-----------------FNQPSLLKVTKQSLAQTFPEIKEM 266 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt--------pg-----------------~~~~~l~~~~~~~l~~~~p~~~~~ 266 (391)
. .....++++++....+ +.++ .. .....+..+++....+..+. .
T Consensus 71 ~----~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 143 (236)
T cd03219 71 E----IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG---E 143 (236)
T ss_pred H----HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh---h
Confidence 0 0113466666653211 1111 00 01122334555555566666 9
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 144 LSgG~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 191 (236)
T cd03219 144 LSYGQQRRLEIARAL-ATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191 (236)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999 88999999999999865
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=186.45 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=117.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||.+ +|++++|+|+||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 3 i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~- 69 (201)
T cd03231 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS------------PPLAGRVLLNGGPLDFQRD- 69 (201)
T ss_pred EEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEecccccH-
Confidence 478899998888999999999 99999999999999999999999999 9999999999877642211
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-----c----ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-----P----GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-----p----g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh 282 (391)
...+.++++++....+ +.++ + ......+..+++..+.+..+. .|||||+||++||+++
T Consensus 70 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl~laral- 140 (201)
T cd03231 70 -----SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVA---QLSAGQQRRVALARLL- 140 (201)
T ss_pred -----HhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchh---hCCHHHHHHHHHHHHH-
Confidence 1234566666543211 1111 0 011223445666666666676 9999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+.+|+++|+| |+.....+.++|.++..+
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 174 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999 889999999999887643
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-23 Score=204.26 Aligned_cols=146 Identities=13% Similarity=0.168 Sum_probs=113.1
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
+|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+. .
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~------~ 63 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL------------RPTSGTARVAGYDVVREPR------K 63 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcccCHH------H
Confidence 567778999999999 99999999999999999999999999 9999999999977643111 1
Q ss_pred eeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccccccccccc
Q 016339 222 TTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 222 ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh 282 (391)
..+.++++++....+ +.++ .+. ....+..+++....+..+. .|||||+||++||+|+
T Consensus 64 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrv~la~al- 139 (302)
T TIGR01188 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG---TYSGGMRRRLDIAASL- 139 (302)
T ss_pred HHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchh---hCCHHHHHHHHHHHHH-
Confidence 234466766653221 1111 011 1223455666666677777 9999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+++|+++|+| |+.....+.+++.+++++
T Consensus 140 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 173 (302)
T TIGR01188 140 IHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE 173 (302)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999 899999999999998754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-23 Score=193.50 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=117.5
Q ss_pred CeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
++++.++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~ 71 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD------------NPTSGEVLFNGQSLSK 71 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEhhh
Confidence 4678889964 46999999999 99999999999999999999999999 9999999999987654
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCcc-------c--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTPG-------F--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg-------~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+.... .....+.++++++....+ +.++-. . ....+..+++....+..+. .|||||+
T Consensus 72 ~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~ 147 (221)
T TIGR02211 72 LSSNER-AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS---ELSGGER 147 (221)
T ss_pred cCHhHH-HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHH
Confidence 432110 000114577777763211 111110 0 1122344555556666676 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 148 qrv~laral-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 190 (221)
T TIGR02211 148 QRVAIARAL-VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE 190 (221)
T ss_pred HHHHHHHHH-hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 889999999999988654
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=191.43 Aligned_cols=152 Identities=13% Similarity=0.125 Sum_probs=117.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 4 VAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY------------VAQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEcccCChh
Confidence 478889998888999999999 99999999999999999999999999 99999999999776433221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++ .+. ....+..+++....+..+. .|||||+||++
T Consensus 72 ------~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~qrl~ 142 (236)
T TIGR03864 72 ------ALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVR---ELNGGHRRRVE 142 (236)
T ss_pred ------hhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChh---hCCHHHHHHHH
Confidence 123567777653221 1111 011 0112334555555566666 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 143 laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 181 (236)
T TIGR03864 143 IARAL-LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRD 181 (236)
T ss_pred HHHHH-hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-22 Score=187.31 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=116.8
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++......
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 4 ARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA------------RPDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred EEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEcccchHH
Confidence 578889998888999999999 99999999999999999999999999 99999999999876432211
Q ss_pred cCCCcceeeeEEEEeccCCC----cccCC------------cccchHHHHhCChhHHhhhchhHHhhcCccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGG----YLADT------------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~----~l~Dt------------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
..++++++++.... .+.++ .......+..+++.+..+..+. .|||||+||++||+
T Consensus 72 ------~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~qrl~la~ 142 (204)
T PRK13538 72 ------YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVR---QLSAGQQRRVALAR 142 (204)
T ss_pred ------hhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChh---hcCHHHHHHHHHHH
Confidence 22345555544211 11111 0011223455666666677777 99999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+ +.+|+++|+| |+.....+.++|.+++.
T Consensus 143 al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 177 (204)
T PRK13538 143 LW-LTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177 (204)
T ss_pred HH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 99 9999999999 88999999999998764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-23 Score=209.93 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=122.9
Q ss_pred CeeEEEEcCC-----------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCccee
Q 016339 137 YEPLFCSVES-----------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (391)
Q Consensus 137 ~~~v~~s~~~-----------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~ 204 (391)
++++.+.|.. ..++++|||.+ +|++++|||+||||||||.++|+|+. +|++|.|.|
T Consensus 283 V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~------------~P~~G~i~~ 350 (539)
T COG1123 283 VRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL------------PPSSGSIIF 350 (539)
T ss_pred eeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEE
Confidence 4557777763 36899999999 99999999999999999999999999 999999999
Q ss_pred cCccccccccccCCCcceeeeEEEEeccCCCc------ccCC--------cc--------cchHHHHhCChh-HHhhhch
Q 016339 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY------LADT--------PG--------FNQPSLLKVTKQ-SLAQTFP 261 (391)
Q Consensus 205 ~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~------l~Dt--------pg--------~~~~~l~~~~~~-~l~~~~p 261 (391)
+|.++ .+. .+..+...+.++++||+.-.. +.+. .. .....+..+++. .++++||
T Consensus 351 ~g~~~-~~~--~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP 427 (539)
T COG1123 351 DGQDL-DLT--GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP 427 (539)
T ss_pred eCccc-ccc--cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 99882 222 122223456788999872211 1100 11 111224455554 4789999
Q ss_pred hHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 262 ~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
. +|||||+||++||||| +.+|+++|+| |+.....++++|.+++++...
T Consensus 428 ~---elSGGQrQRvaIARAL-a~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~ 481 (539)
T COG1123 428 H---ELSGGQRQRVAIARAL-ALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481 (539)
T ss_pred h---hcCcchhHHHHHHHHH-hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC
Confidence 9 9999999999999999 9999999999 899999999999999988665
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-23 Score=207.32 Aligned_cols=156 Identities=18% Similarity=0.250 Sum_probs=121.5
Q ss_pred CeeEEEEcC----CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~----~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|+ +..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~------------~p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE------------RPTSGRVLVDGQDLTA 71 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCc
Confidence 578899997 357999999999 89999999999999999999999999 9999999999987754
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+... .+...+.++++++....+ +.++ .+. ....+..+++....+.+|. .|||||+
T Consensus 72 ~~~~~--~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LSgGq~ 146 (343)
T PRK11153 72 LSEKE--LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPA---QLSGGQK 146 (343)
T ss_pred CCHHH--HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHHH
Confidence 43211 011235678888764321 1111 011 1123445566666777777 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....++++|.++.++
T Consensus 147 qRv~lAraL-~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~ 189 (343)
T PRK11153 147 QRVAIARAL-ASNPKVLLCDEATSALDPATTRSILELLKDINRE 189 (343)
T ss_pred HHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 889999999999998764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-23 Score=190.75 Aligned_cols=156 Identities=18% Similarity=0.244 Sum_probs=118.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 2 ~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 69 (213)
T cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE------------EPDSGTIIIDGLKLTDDKK 69 (213)
T ss_pred EEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCccch
Confidence 3578899998888999999999 99999999999999999999999999 9999999999986632100
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc--------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP--------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. .....+.++++++....+ +.++. ++ ....+..+++....+..+. .|||||+||
T Consensus 70 ~---~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qr 143 (213)
T cd03262 70 N---INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA---QLSGGQQQR 143 (213)
T ss_pred h---HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCcc---ccCHHHHHH
Confidence 0 011235577777653211 11110 11 1122344566666677777 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....+.++|.++++.
T Consensus 144 v~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 184 (213)
T cd03262 144 VAIARAL-AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 184 (213)
T ss_pred HHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHc
Confidence 9999999 9999999999 889999999999998753
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=189.36 Aligned_cols=153 Identities=13% Similarity=0.186 Sum_probs=113.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL------------PPRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEcCCCCHH
Confidence 578889998888999999999 99999999999999999999999999 99999999999776443221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCcc----c--c-------hHHHHhC-ChhHHhhhchhHHhhcCccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTPG----F--N-------QPSLLKV-TKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtpg----~--~-------~~~l~~~-~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
. ...+.++++++....+ +.++-. . . ...+..+ .+....+..+. .|||||+||++|
T Consensus 71 ~----~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~---~LS~G~~qrv~l 143 (222)
T cd03224 71 E----RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAG---TLSGGEQQMLAI 143 (222)
T ss_pred H----HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchh---hCCHHHHHHHHH
Confidence 1 0124567777653221 111100 0 0 0111222 12333444454 899999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 144 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 180 (222)
T cd03224 144 ARAL-MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD 180 (222)
T ss_pred HHHH-hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999 9999999999 88999999999998865
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-23 Score=194.08 Aligned_cols=128 Identities=21% Similarity=0.268 Sum_probs=108.4
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
..++++|||.+ +|++++|||+||||||||-++|+|++ +|++|+|+|+|+++..++.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~------------~pt~G~i~f~g~~i~~~~~----------- 82 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE------------EPTSGEILFEGKDITKLSK----------- 82 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc------------CCCCceEEEcCcchhhcch-----------
Confidence 37899999999 99999999999999999999999999 9999999999988654430
Q ss_pred EEEEeccCCCcccCCcccchHHHHhCChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHH
Q 016339 226 VSLLPLSGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQ 298 (391)
Q Consensus 226 i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~ 298 (391)
..........+..+++. +.+.+||+ +|||||+||+.||||+ +.+|+++|.| |.....
T Consensus 83 ------------~~~~~~v~elL~~Vgl~~~~~~ryPh---elSGGQrQRi~IARAL-al~P~liV~DEpvSaLDvSiqa 146 (268)
T COG4608 83 ------------EERRERVLELLEKVGLPEEFLYRYPH---ELSGGQRQRIGIARAL-ALNPKLIVADEPVSALDVSVQA 146 (268)
T ss_pred ------------hHHHHHHHHHHHHhCCCHHHhhcCCc---ccCchhhhhHHHHHHH-hhCCcEEEecCchhhcchhHHH
Confidence 00011233455666653 57899999 9999999999999999 9999999999 778999
Q ss_pred HHHHHHHHHHHHHhh
Q 016339 299 YYFQLLDEIRIREEF 313 (391)
Q Consensus 299 ~~~~ll~el~~~~~~ 313 (391)
+++++|.+++++...
T Consensus 147 qIlnLL~dlq~~~~l 161 (268)
T COG4608 147 QILNLLKDLQEELGL 161 (268)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999987665
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-23 Score=203.83 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=119.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.++|.++.....
T Consensus 4 ~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~------------~~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 4 RVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL------------PPDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcccChH
Confidence 4678999999889999999999 89999999999999999999999999 9999999999977643211
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
...+.++++++....+ +.++ .+. ....+..+++....++.+. .|||||+||+
T Consensus 72 ------~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~qrv 142 (301)
T TIGR03522 72 ------EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIG---QLSKGYRQRV 142 (301)
T ss_pred ------HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchh---hCCHHHHHHH
Confidence 1234567777653221 1111 111 1223445566666677666 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||+|+ +++|+++|+| |+.....+++++.+++.
T Consensus 143 ~la~al-~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~ 181 (301)
T TIGR03522 143 GLAQAL-IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK 181 (301)
T ss_pred HHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999 9999999999 89999999999999864
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-23 Score=191.65 Aligned_cols=150 Identities=23% Similarity=0.287 Sum_probs=116.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||++ +| +++|+||||||||||+++|+|+. +|++|+|+++|.++...+.
T Consensus 3 ~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~- 68 (211)
T cd03264 3 LENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT------------PPSSGTIRIDGQDVLKQPQ- 68 (211)
T ss_pred EEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCCccccchH-
Confidence 578889998888999999999 88 99999999999999999999999 9999999999987643221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
...+.+++++++...+ +.++- + .....+..+++....+..+. .|||||+||++
T Consensus 69 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~ 140 (211)
T cd03264 69 -----KLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIG---SLSGGMRRRVG 140 (211)
T ss_pred -----HHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchh---hCCHHHHHHHH
Confidence 1234566766653211 11110 0 01123445566666677777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 141 la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (211)
T cd03264 141 IAQAL-VGDPSILIVDEPTAGLDPEERIRFRNLLSELGE 178 (211)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC
Confidence 99999 9999999999 88999999999998864
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-23 Score=195.23 Aligned_cols=158 Identities=20% Similarity=0.230 Sum_probs=118.4
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.++++.++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 7 ~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~i~ 74 (233)
T PRK11629 7 QCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD------------TPTSGDVIFNGQPMS 74 (233)
T ss_pred EEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcC
Confidence 45788889964 46899999999 89999999999999999999999999 999999999998775
Q ss_pred ccccccCCCcceeeeEEEEeccCCC----cccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGG----YLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
..+.... .....+.+++++++... .+.++. +. ....+..+++.++.+..+. .|||||
T Consensus 75 ~~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LSgG~ 150 (233)
T PRK11629 75 KLSSAAK-AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS---ELSGGE 150 (233)
T ss_pred cCCHHHH-HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHH
Confidence 4432100 00011457777776321 111110 10 1122344566556666676 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.+++..
T Consensus 151 ~qrl~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (233)
T PRK11629 151 RQRVAIARAL-VNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194 (233)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 889999999999998654
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=185.37 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=116.8
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++......
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL------------RPDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred EEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCEEcccchHH
Confidence 467889998888999999999 99999999999999999999999999 89999999999876443211
Q ss_pred cCCCcceeeeEEEEeccCCC----cccCCc-------c----cchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGG----YLADTP-------G----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
..+.++++++.... .+.++. + .....+..+++.+..+..+. .|||||+||++||+|
T Consensus 71 ------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~la~a 141 (198)
T TIGR01189 71 ------PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA---QLSAGQQRRLALARL 141 (198)
T ss_pred ------hhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChh---hcCHHHHHHHHHHHH
Confidence 22456666654221 111110 0 11223445566666667777 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+ +.+|+++|+| |+.....+.+++.++.+
T Consensus 142 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 175 (198)
T TIGR01189 142 W-LSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175 (198)
T ss_pred H-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 9 9999999999 88899999999988754
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-23 Score=197.25 Aligned_cols=154 Identities=20% Similarity=0.251 Sum_probs=120.3
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++++++|. ...+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+
T Consensus 6 ~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~ 73 (274)
T PRK13647 6 EVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY------------LPQRGRVKVMGREVNAEN 73 (274)
T ss_pred EEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCceEEEECCEECCCCC
Confidence 4678999995 567999999999 99999999999999999999999999 999999999998764322
Q ss_pred cccCCCcceeeeEEEEeccCCC-----cccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG-----YLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~-----~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
.. ...+.+++++++... .+.++- +. ....+..+++.+..+.+|. .|||||+|
T Consensus 74 ~~-----~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~LSgG~~q 145 (274)
T PRK13647 74 EK-----WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY---HLSYGQKK 145 (274)
T ss_pred HH-----HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh---hCCHHHHH
Confidence 11 123457777775311 111110 11 1223445677777788888 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.+++.+
T Consensus 146 rv~laraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (274)
T PRK13647 146 RVAIAGVL-AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187 (274)
T ss_pred HHHHHHHH-HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC
Confidence 99999999 9999999999 889999999999998754
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-23 Score=214.92 Aligned_cols=155 Identities=20% Similarity=0.269 Sum_probs=122.5
Q ss_pred hcCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 134 TWGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 134 ~~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
++.+++++++|.+ ..+|+++|+++ +|++++|+||||||||||+|+|+|++ +|++|+|.++|.++..
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~------------~p~~G~I~i~g~~i~~ 401 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL------------DPLQGEVTLDGVSVSS 401 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEhhh
Confidence 3567999999965 46899999999 99999999999999999999999999 9999999999998877
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC-----cccch----HHHHhCChhHHhhhchhH--------HhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQ----PSLLKVTKQSLAQTFPEI--------KEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~~--------~~~LSgGq 271 (391)
+ ... .++++++++|+. .+.+.++ |...+ ..+...++.+....+|+- ...|||||
T Consensus 402 ~-~~~-----lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 475 (529)
T TIGR02868 402 L-QDE-----LRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGE 475 (529)
T ss_pred H-HHH-----HHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHH
Confidence 6 432 567789999883 3334333 22222 234455665555555431 23699999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
+||++||||+ +.+|+++|+| |++....+.+.+.++
T Consensus 476 rQRiaiARal-l~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 476 RQRLALARAL-LADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 788888888877764
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-23 Score=195.37 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=117.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|..+..
T Consensus 13 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~------------~p~~G~i~~~g~~~~~-- 78 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE------------TPSAGELLAGTAPLAE-- 78 (257)
T ss_pred EEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEHHH--
Confidence 45689999998888999999999 89999999999999999999999999 9999999998865421
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc---------ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP---------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp---------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
..+.++++++....+ +.++. ......+..+++....+..+. .|||||+||++||+|
T Consensus 79 --------~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LSgGqkqrl~lara 147 (257)
T PRK11247 79 --------AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPA---ALSGGQKQRVALARA 147 (257)
T ss_pred --------hhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChh---hCCHHHHHHHHHHHH
Confidence 123355555542211 11110 111223455666666777777 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 148 L-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 182 (257)
T PRK11247 148 L-IHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ 182 (257)
T ss_pred H-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9 9999999999 889999999999998654
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=185.83 Aligned_cols=152 Identities=13% Similarity=0.077 Sum_probs=115.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.....
T Consensus 3 ~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~v~~~g~~~~~~~~ 70 (200)
T PRK13540 3 DVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL------------NPEKGEILFERQSIKKDLC 70 (200)
T ss_pred EEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeeEEECCCccccCHH
Confidence 3578899998888999999999 99999999999999999999999999 9999999999987643111
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCcc----------cchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPG----------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtpg----------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
...+.++++++.... .+.++-. .....+..+++....+..+. .||+||+||++||+|
T Consensus 71 ------~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~~rv~lara 141 (200)
T PRK13540 71 ------TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCG---LLSSGQKRQVALLRL 141 (200)
T ss_pred ------HHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChh---hcCHHHHHHHHHHHH
Confidence 123456676654221 1111110 01222334444444555555 899999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+ +.+|+++|+| |+.....+.++|.++++
T Consensus 142 l-~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~ 175 (200)
T PRK13540 142 W-MSKAKLWLLDEPLVALDELSLLTIITKIQEHRA 175 (200)
T ss_pred H-hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence 9 9999999999 88999999999998754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-22 Score=189.22 Aligned_cols=154 Identities=11% Similarity=0.133 Sum_probs=115.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL------------PVKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEECCCCCHH
Confidence 578899998888999999999 99999999999999999999999999 99999999999876543321
Q ss_pred cCCCcceeeeEEEEeccCCCcc----cCCc-------cc-----chHHHHhCC-hhHHhhhchhHHhhcCcccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYL----ADTP-------GF-----NQPSLLKVT-KQSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l----~Dtp-------g~-----~~~~l~~~~-~~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
. ...+.++++++....+. .++- +. ....+..++ +....+..+. .|||||+||++||
T Consensus 71 ~----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~---~LS~G~~qrv~la 143 (230)
T TIGR03410 71 E----RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGG---DLSGGQQQQLAIA 143 (230)
T ss_pred H----HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChh---hCCHHHHHHHHHH
Confidence 1 01245777776633211 1110 00 011122222 2334455555 8999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+ +.+|+++++| |+.....+.++|.++.++
T Consensus 144 ~al-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (230)
T TIGR03410 144 RAL-VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180 (230)
T ss_pred HHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 999 9999999999 889999999999998764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-22 Score=190.32 Aligned_cols=153 Identities=16% Similarity=0.285 Sum_probs=117.1
Q ss_pred CeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 3 ~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 3 FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI------------EPTSGEIFIDGEDIREQDP 70 (242)
T ss_pred EEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCeEcCcCCh
Confidence 4788899987 78999999999 99999999999999999999999999 9999999999987654322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhH--HhhhchhHHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQS--LAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~--l~~~~p~~~~~LSgGq~q 273 (391)
.. ....++++++....+ +.++. +. ....+..+++.. +.+..+. .|||||+|
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---~LS~G~~q 142 (242)
T cd03295 71 VE-----LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPH---ELSGGQQQ 142 (242)
T ss_pred HH-----hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChh---hCCHHHHH
Confidence 11 224566776653211 11111 00 112234455543 5566666 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 143 rv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~ 184 (242)
T cd03295 143 RVGVARAL-AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE 184 (242)
T ss_pred HHHHHHHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999 888999999999998764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-23 Score=213.84 Aligned_cols=159 Identities=18% Similarity=0.273 Sum_probs=125.0
Q ss_pred hcCCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 134 TWGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 134 ~~g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+.|++|+|+|.+. .+++|+||+| +|+++|||||||+||||++++|..++ +|++|+|.+||.++
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY------------~PtsG~IllDG~~i 532 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY------------DPTSGRILLDGVPI 532 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc------------CCCCCeEEECCeeh
Confidence 35689999999654 5899999999 89999999999999999999999999 99999999999999
Q ss_pred cccccccCCCcceeeeEEEEecc---CCCcccCCc-----ccchHHHH----hCChhHHhhhchhHH--------hhcCc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLS---GGGYLADTP-----GFNQPSLL----KVTKQSLAQTFPEIK--------EMLKA 269 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dtp-----g~~~~~l~----~~~~~~l~~~~p~~~--------~~LSg 269 (391)
..+.... ..++++++.|+ +++.+.++- ...++.+. .....++...||+-. .+|||
T Consensus 533 ~~~~~~~-----lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 533 SDINHKY-----LRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred hhcCHHH-----HHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 8776643 56888998887 445555442 22222222 223334444455422 38999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||+|||||| +.+|.++|+| |.+....+.+.|.++.+.
T Consensus 608 GQKQRIAIARAL-lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~ 653 (716)
T KOG0058|consen 608 GQKQRIAIARAL-LRNPRVLILDEATSALDAESEYLVQEALDRLMQG 653 (716)
T ss_pred hHHHHHHHHHHH-hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC
Confidence 999999999999 9999999999 788888888888877654
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=193.31 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=119.0
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 12 l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~ 79 (265)
T PRK10575 12 FALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ------------PPSEGEILLDAQPLESWS 79 (265)
T ss_pred EEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCCEEEECCEehhhCC
Confidence 45678899998888999999999 99999999999999999999999999 999999999998764332
Q ss_pred cccCCCcceeeeEEEEeccCCC----cccCCc-------------------ccchHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTP-------------------GFNQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------------------g~~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
... ..+.++++++.... .+.++- ......+..+++.+..+..+. .||||
T Consensus 80 ~~~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG 151 (265)
T PRK10575 80 SKA-----FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD---SLSGG 151 (265)
T ss_pred HHH-----HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc---cCCHH
Confidence 211 12346666654221 111100 001123445566666677777 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 152 ~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 196 (265)
T PRK10575 152 ERQRAWIAMLV-AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196 (265)
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 889999999999998754
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-23 Score=191.48 Aligned_cols=156 Identities=18% Similarity=0.316 Sum_probs=117.7
Q ss_pred CeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++| +...+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~ 71 (222)
T PRK10908 4 FEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE------------RPSAGKIWFSGHDITRLKN 71 (222)
T ss_pred EEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcccCCh
Confidence 57888899 6678999999999 99999999999999999999999999 9999999999987654322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.. .+...+.++++++....+ +.++ .++. ...+..+++....+..+. .|||||+||+
T Consensus 72 ~~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv 146 (222)
T PRK10908 72 RE--VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI---QLSGGEQQRV 146 (222)
T ss_pred hH--HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCch---hCCHHHHHHH
Confidence 10 001234567777653211 1111 0111 123344555556666676 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.+++.+++++
T Consensus 147 ~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (222)
T PRK10908 147 GIARAV-VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV 186 (222)
T ss_pred HHHHHH-HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC
Confidence 999999 9999999999 888999999999988643
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=191.74 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=116.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 7 SVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY------------KPTGGTILLRGQHIEGLPG 74 (255)
T ss_pred EEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc------------CCCcceEEECCEECCCCCH
Confidence 4578899998888999999999 99999999999999999999999999 9999999999987643321
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccC--------------------Ccc----------cchHHHHhCChhHHhhhc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LAD--------------------TPG----------FNQPSLLKVTKQSLAQTF 260 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~D--------------------tpg----------~~~~~l~~~~~~~l~~~~ 260 (391)
... ....+.++++....+ +.+ .+. .....+..+++....+..
T Consensus 75 ~~~----~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 150 (255)
T PRK11300 75 HQI----ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ 150 (255)
T ss_pred HHH----HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC
Confidence 100 112244444432111 111 000 011223455666667777
Q ss_pred hhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 261 p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+. .|||||+||++||+|+ +.+|+++|+| |+.....+.++|.+++++
T Consensus 151 ~~---~LS~G~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~ 202 (255)
T PRK11300 151 AG---NLAYGQQRRLEIARCM-VTQPEILMLDEPAAGLNPKETKELDELIAELRNE 202 (255)
T ss_pred hh---hCCHHHHHHHHHHHHH-hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh
Confidence 77 9999999999999999 9999999999 889999999999998764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=196.24 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=121.0
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|++ ..+|+++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~ 72 (279)
T PRK13650 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL------------EAESGQIIIDGDLLT 72 (279)
T ss_pred EEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEECC
Confidence 346789999964 35999999999 99999999999999999999999999 999999999998775
Q ss_pred ccccccCCCcceeeeEEEEeccCC-C----cccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGG-G----YLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~-~----~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
..+... ..+.++++++... . .+.++- +. ....+..+++....+..|. .||||
T Consensus 73 ~~~~~~-----~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LSgG 144 (279)
T PRK13650 73 EENVWD-----IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPA---RLSGG 144 (279)
T ss_pred cCcHHH-----HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcc---cCCHH
Confidence 322211 2345677776531 1 111110 11 1233456677777788887 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+||++||+|+ +.+|+++|+| |+.....+.+++.++..+
T Consensus 145 q~qrv~lAral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (279)
T PRK13650 145 QKQRVAIAGAV-AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD 189 (279)
T ss_pred HHHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 889999999999998764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=201.25 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=120.8
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++++++|+. ..+|++|||++ +|++++|+|+||||||||+++|+|++.+.+ .|++|+|.++|.++.
T Consensus 5 ~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~--------~~~~G~i~~~G~~i~ 76 (326)
T PRK11022 5 NVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPG--------RVMAEKLEFNGQDLQ 76 (326)
T ss_pred EEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC--------CCcceEEEECCEECC
Confidence 45788899976 36999999999 999999999999999999999999982110 258999999998876
Q ss_pred ccccccCCCcceeeeEEEEeccCCCccc----------CC----ccc--------chHHHHhCChh---HHhhhchhHHh
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLA----------DT----PGF--------NQPSLLKVTKQ---SLAQTFPEIKE 265 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~----------Dt----pg~--------~~~~l~~~~~~---~l~~~~p~~~~ 265 (391)
..+.... .+...+.+++++|+....+. +. .+. ....+..+++. ...+.+|.
T Consensus 77 ~~~~~~~-~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~--- 152 (326)
T PRK11022 77 RISEKER-RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPH--- 152 (326)
T ss_pred cCCHHHH-HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCch---
Confidence 5443210 01122468888887421111 00 011 11224455553 34567888
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+|||||+||++||+|+ +.+|+++|+| |+.....++++|.+++++.
T Consensus 153 ~LSgGq~QRv~iArAL-~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~ 203 (326)
T PRK11022 153 QLSGGMSQRVMIAMAI-ACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE 203 (326)
T ss_pred hCCHHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999 9999999999 8999999999999997653
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-23 Score=191.91 Aligned_cols=159 Identities=17% Similarity=0.198 Sum_probs=119.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
.+.++++|+.-.++++|||++ +|++++||||||||||||+|+|+|.+ +|++|+|.|+|.++..+++.
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~------------~P~~G~v~~~G~~it~l~p~ 74 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY------------KPSSGTVIFRGRDITGLPPH 74 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc------------cCCCceEEECCcccCCCCHH
Confidence 467899999999999999999 89999999999999999999999999 99999999999998776653
Q ss_pred cCCCcceeeeEEEEeccCCCcccCC-----------------ccc----------chHHHHhCChhHHhhhchhHHhhcC
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADT-----------------PGF----------NQPSLLKVTKQSLAQTFPEIKEMLK 268 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dt-----------------pg~----------~~~~l~~~~~~~l~~~~p~~~~~LS 268 (391)
........|.++......++.+.++ |.. ....++.+++.+.++.... .||
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~---~Ls 151 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG---NLS 151 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh---cCC
Confidence 2100001111111111111211111 111 1123456677777777666 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+|||+++.||||+ +.+|+++++| .+.....+.+++.++++..
T Consensus 152 yG~qR~LEIArAL-a~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~ 199 (250)
T COG0411 152 YGQQRRLEIARAL-ATQPKLLLLDEPAAGLNPEETEELAELIRELRDRG 199 (250)
T ss_pred hhHhHHHHHHHHH-hcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999 9999999999 5678889999999988753
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-22 Score=186.31 Aligned_cols=149 Identities=20% Similarity=0.277 Sum_probs=113.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++.. .++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~------------~~~~G~i~~~g~~~~~~~~- 67 (211)
T cd03298 3 LDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE------------TPQSGRVLINGVDVTAAPP- 67 (211)
T ss_pred EEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEcCcCCH-
Confidence 577888887644 3899999 89999999999999999999999999 9999999999976643221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC------c---------ccchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT------P---------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt------p---------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.+++++++...+ +.++ + ......+..+++....+..|. .|||||+||++
T Consensus 68 ------~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~ 138 (211)
T cd03298 68 ------ADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG---ELSGGERQRVA 138 (211)
T ss_pred ------hHccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc---cCCHHHHHHHH
Confidence 113456666552211 1111 0 011123445566666677777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 139 ia~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 177 (211)
T cd03298 139 LARVL-VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE 177 (211)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-23 Score=193.27 Aligned_cols=159 Identities=20% Similarity=0.260 Sum_probs=118.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.....
T Consensus 4 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 4 QLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE------------MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEecccccc
Confidence 4578899998888999999999 99999999999999999999999999 9999999999986531110
Q ss_pred cc-CCCcceeeeEEEEeccCCCc----ccCCc--------cc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 215 KS-GRGKHTTRHVSLLPLSGGGY----LADTP--------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~-~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
.. .........++++++....+ +.++- +. ....+..+++....+..+. .|||||+|
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~q 148 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPL---HLSGGQQQ 148 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHHH
Confidence 00 00001234567777653211 11110 11 1122344566666677777 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.++++.
T Consensus 149 rv~laral-~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~ 190 (242)
T PRK11124 149 RVAIARAL-MMEPQVLLFDEPTAALDPEITAQIVSIIRELAET 190 (242)
T ss_pred HHHHHHHH-hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHc
Confidence 99999999 9999999999 889999999999998653
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-22 Score=189.83 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=116.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 4 YLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT------------RPDEGSVLFGGTDLTGLPE 71 (242)
T ss_pred EEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEECCeecCCCCH
Confidence 3578889998778999999999 99999999999999999999999999 9999999999976644322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-----------------------ccchHHHHhCChhHHhhhchhHHhhc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-----------------------GFNQPSLLKVTKQSLAQTFPEIKEML 267 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-----------------------g~~~~~l~~~~~~~l~~~~p~~~~~L 267 (391)
... ..+.++++++....+ +.++. ......+..+++....+..+. .|
T Consensus 72 ~~~----~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~L 144 (242)
T TIGR03411 72 HQI----ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG---LL 144 (242)
T ss_pred HHH----HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh---hC
Confidence 100 123466666552211 11110 011222344555555666666 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||||+||++||+|+ +.+|+++++| |+.....+.+++.++..
T Consensus 145 S~Ge~qrv~laral-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ 191 (242)
T TIGR03411 145 SHGQKQWLEIGMLL-MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG 191 (242)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999 9999999999 88999999999999865
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-23 Score=191.22 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=118.2
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++++++|++ ..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 8 ~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~~~ 75 (228)
T PRK10584 8 EVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD------------DGSSGEVSLVGQPLH 75 (228)
T ss_pred EEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCeeEEECCEEcc
Confidence 45788899975 25899999999 99999999999999999999999999 999999999998765
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
..+... ......+.++++++....+ +.++. + .....+..+++.+..+..|. .|||||
T Consensus 76 ~~~~~~-~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~Ge 151 (228)
T PRK10584 76 QMDEEA-RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPA---QLSGGE 151 (228)
T ss_pred cCCHHH-HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChh---hCCHHH
Confidence 432210 0000123567777653211 11110 0 01122445566666667777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.+++.++..+
T Consensus 152 ~qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 195 (228)
T PRK10584 152 QQRVALARAF-NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE 195 (228)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 889999999999998654
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-22 Score=179.51 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=104.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY------------KPDSGEILVDGKEVSFASPR 70 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEECCcCCHH
Confidence 578999998888999999999 99999999999999999999999999 99999999999876543221
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
. ...+.++++++ ||+||+||++||+|+ +.+|+++++|
T Consensus 71 ~----~~~~~i~~~~q-----------------------------------LS~G~~qrl~laral-~~~p~illlDEP~ 110 (163)
T cd03216 71 D----ARRAGIAMVYQ-----------------------------------LSVGERQMVEIARAL-ARNARLLILDEPT 110 (163)
T ss_pred H----HHhcCeEEEEe-----------------------------------cCHHHHHHHHHHHHH-hcCCCEEEEECCC
Confidence 0 02234555553 999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.+++.++.++
T Consensus 111 ~~LD~~~~~~l~~~l~~~~~~ 131 (163)
T cd03216 111 AALTPAEVERLFKVIRRLRAQ 131 (163)
T ss_pred cCCCHHHHHHHHHHHHHHHHC
Confidence 889999999999988643
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-23 Score=190.19 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=124.9
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
.+++.++|++..+++++|+.+ +||+++|+|||||||||.++++.|+. .|++|.|++++.+++..+-.
T Consensus 7 a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv------------~~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 7 AENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV------------RPDSGKILLDDEDITKLPMH 74 (243)
T ss_pred ehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE------------ecCCceEEECCcccccCChH
Confidence 367788999999999999999 99999999999999999999999999 99999999999999876653
Q ss_pred cCCCcceeeeEEEEeccCCC----cccCC-----------cc--c----chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGG----YLADT-----------PG--F----NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~----~l~Dt-----------pg--~----~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.. .+..++|++|+... .+.|+ .. . .+..+..+.+..+.+.... .|||||++|
T Consensus 75 ~R----ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~---sLSGGERRR 147 (243)
T COG1137 75 KR----ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY---SLSGGERRR 147 (243)
T ss_pred HH----hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc---ccccchHHH
Confidence 22 34567888887322 12222 00 0 1123445666677776666 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|.||||| +.+|..+++| ||.....+.+++..|+..
T Consensus 148 ~EIARaL-a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r 188 (243)
T COG1137 148 VEIARAL-AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR 188 (243)
T ss_pred HHHHHHH-hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC
Confidence 9999999 9999999999 899999999999999865
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-22 Score=189.92 Aligned_cols=155 Identities=19% Similarity=0.224 Sum_probs=118.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~ 71 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI------------DPTEGSILIDGVDIKTID 71 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEhhhcC
Confidence 34678899998888999999999 99999999999999999999999999 999999999998765332
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------cc----chHHHHhCChh-HHhhhchhHHhhcCcccccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF----NQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~----~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
... ..+.++++++....+ +.++. +. ....+..+++. .+.+..+. .|||||+||++||
T Consensus 72 ~~~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LS~G~~qrl~la 143 (241)
T PRK14250 72 VID-----LRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVK---NLSGGEAQRVSIA 143 (241)
T ss_pred hHH-----hhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcc---cCCHHHHHHHHHH
Confidence 211 234567777663211 11110 00 11223445553 45666676 9999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 144 ~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (241)
T PRK14250 144 RTL-ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK 180 (241)
T ss_pred HHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999 9999999999 888999999999998764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-22 Score=193.79 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=119.1
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++++++|+ ...+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++....
T Consensus 3 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~ 70 (274)
T PRK13644 3 RLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL------------RPQKGKVLVSGIDTGDFS 70 (274)
T ss_pred EEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEECCccc
Confidence 3578899995 466999999999 99999999999999999999999999 999999999998765432
Q ss_pred cccCCCcceeeeEEEEeccCCC-----cccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG-----YLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~-----~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
.. ....+.++++++.... .+.++- +. ....+..+++....+..+. .|||||+|
T Consensus 71 ~~----~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~q 143 (274)
T PRK13644 71 KL----QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK---TLSGGQGQ 143 (274)
T ss_pred cH----HHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcc---cCCHHHHH
Confidence 11 0123456777765321 111110 11 1122445666667777777 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+++++.+++..
T Consensus 144 rv~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 185 (274)
T PRK13644 144 CVALAGIL-TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK 185 (274)
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 99999999 9999999999 889999999999998753
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-22 Score=192.94 Aligned_cols=155 Identities=19% Similarity=0.280 Sum_probs=119.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 8 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~ 75 (265)
T PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM------------TPAHGHVWLDGEHIQHYA 75 (265)
T ss_pred EEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCcEEEECCEEhhhCC
Confidence 45688999999888999999999 99999999999999999999999999 899999999998764332
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC------cc-------------cchHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT------PG-------------FNQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt------pg-------------~~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
... ....+++++++...+ +.++ +. .....+..+++.+..+..+. .||||
T Consensus 76 ~~~-----~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G 147 (265)
T PRK10253 76 SKE-----VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD---TLSGG 147 (265)
T ss_pred HHH-----HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc---cCChH
Confidence 110 123456666652211 1111 00 01123444566666777777 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 148 q~qrv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~ 192 (265)
T PRK10253 148 QRQRAWIAMVL-AQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192 (265)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 889999999999998654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-22 Score=194.86 Aligned_cols=155 Identities=16% Similarity=0.200 Sum_probs=120.9
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|++ ..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~------------~p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL------------LPEAGTITVGGMVLSE 73 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECCEECCc
Confidence 346889999964 46999999999 89999999999999999999999999 9999999999987754
Q ss_pred cccccCCCcceeeeEEEEeccCC-----CcccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~-----~~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.+... ..+.++++++... ..+.++- ++ ....+..+++....+..|. .|||||
T Consensus 74 ~~~~~-----~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LS~G~ 145 (279)
T PRK13635 74 ETVWD-----VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH---RLSGGQ 145 (279)
T ss_pred CcHHH-----HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc---cCCHHH
Confidence 32211 2345777776531 1111110 11 1223445566777777777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 146 ~qrv~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 189 (279)
T PRK13635 146 KQRVAIAGVL-ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ 189 (279)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 9999999999 9999999999 889999999999998765
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-22 Score=194.73 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=119.8
Q ss_pred CCeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.++++.++|+. ..+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~ 71 (287)
T PRK13637 4 KIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL------------KPTSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCccEEEECCEEC
Confidence 35788899964 36999999999 99999999999999999999999999 99999999999877
Q ss_pred cccccccCCCcceeeeEEEEeccCCC-----cccCCc-------cc--------chHHHHhCChh--HHhhhchhHHhhc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTP-------GF--------NQPSLLKVTKQ--SLAQTFPEIKEML 267 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~-----~l~Dtp-------g~--------~~~~l~~~~~~--~l~~~~p~~~~~L 267 (391)
...+... ....+.+++++++... .+.++- ++ ....+..+++. .+.+..|. .|
T Consensus 72 ~~~~~~~---~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~---~L 145 (287)
T PRK13637 72 TDKKVKL---SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPF---EL 145 (287)
T ss_pred CCcCccH---HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcc---cC
Confidence 5432110 0123567788876321 111110 11 12234455664 55677777 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+++++.++..+
T Consensus 146 SgGq~qrv~iAraL-~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 193 (287)
T PRK13637 146 SGGQKRRVAIAGVV-AMEPKILILDEPTAGLDPKGRDEILNKIKELHKE 193 (287)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999 899999999999998765
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-22 Score=200.41 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=120.5
Q ss_pred CCeeEEEEcCC-------------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCc
Q 016339 136 GYEPLFCSVES-------------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201 (391)
Q Consensus 136 g~~~v~~s~~~-------------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~ 201 (391)
.+++++++|.. ..+++++||+| +|++++|+|+||||||||+++|+|+. .|++|+
T Consensus 10 ~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~------------~p~~G~ 77 (331)
T PRK15079 10 EVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV------------KATDGE 77 (331)
T ss_pred EEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCcE
Confidence 34677777752 35899999999 99999999999999999999999999 899999
Q ss_pred ceecCccccccccccCCCcceeeeEEEEeccCC--C----cccCC---------cccc--------hHHHHhCCh-hHHh
Q 016339 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG--G----YLADT---------PGFN--------QPSLLKVTK-QSLA 257 (391)
Q Consensus 202 I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~--~----~l~Dt---------pg~~--------~~~l~~~~~-~~l~ 257 (391)
|+|+|.++....... .+...+.+++++|+.. . .+.++ ++.. ...+..+++ ....
T Consensus 78 I~~~G~~i~~~~~~~--~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~ 155 (331)
T PRK15079 78 VAWLGKDLLGMKDDE--WRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI 155 (331)
T ss_pred EEECCEECCcCCHHH--HHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh
Confidence 999998876543311 0112356888888731 1 11111 0111 122445565 3567
Q ss_pred hhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 258 ~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+.+|. +|||||+||++||+|+ +.+|+++|+| |+.....++++|.+++++
T Consensus 156 ~~~p~---~LSgG~~QRv~iArAL-~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (331)
T PRK15079 156 NRYPH---EFSGGQCQRIGIARAL-ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210 (331)
T ss_pred cCCcc---cCCHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 88888 9999999999999999 9999999999 889999999999999765
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-22 Score=189.67 Aligned_cols=144 Identities=19% Similarity=0.243 Sum_probs=108.3
Q ss_pred HHhhcccC-CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEe
Q 016339 152 SLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP 230 (391)
Q Consensus 152 ~ls~~i~G-e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~ 230 (391)
+++|.++| .++||.|+||||||||||+|+|+. +|+.|.|.++|.-+..........+ -.|.++|+|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~------------rPdeG~I~lngr~L~Ds~k~i~lp~-~~RriGYVF 82 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLT------------RPDEGRIELNGRVLVDAEKGIFLPP-EKRRIGYVF 82 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccC------------CccccEEEECCEEeecccCCcccCh-hhheeeeEe
Confidence 35566666 899999999999999999999999 9999999998864432222111111 124455555
Q ss_pred ccCCC--------------cccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec----
Q 016339 231 LSGGG--------------YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG---- 292 (391)
Q Consensus 231 ~~~~~--------------~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD---- 292 (391)
|+... +..+.+.| ......++++.+++++|. .|||||||||+|+||| +..|+++++|
T Consensus 83 QDARLFpH~tVrgNL~YG~~~~~~~~f-d~iv~lLGI~hLL~R~P~---~LSGGEkQRVAIGRAL-Lt~P~LLLmDEPLa 157 (352)
T COG4148 83 QDARLFPHYTVRGNLRYGMWKSMRAQF-DQLVALLGIEHLLDRYPG---TLSGGEKQRVAIGRAL-LTAPELLLMDEPLA 157 (352)
T ss_pred eccccccceEEecchhhhhcccchHhH-HHHHHHhCcHHHHhhCCC---ccCcchhhHHHHHHHH-hcCCCeeeecCchh
Confidence 55222 22222222 234567899999999999 9999999999999999 9999999999
Q ss_pred --CHHHHHHHHHHHHHHHHHHhh
Q 016339 293 --DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 293 --D~~~~~~~~~ll~el~~~~~~ 313 (391)
|..|..+++-.++.+.++...
T Consensus 158 SLD~~RK~EilpylERL~~e~~I 180 (352)
T COG4148 158 SLDLPRKREILPYLERLRDEINI 180 (352)
T ss_pred hcccchhhHHHHHHHHHHHhcCC
Confidence 778999999999999876554
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-22 Score=192.23 Aligned_cols=158 Identities=19% Similarity=0.273 Sum_probs=120.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+
T Consensus 8 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~ 75 (269)
T PRK11831 8 VDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI------------APDHGEILFDGENIPAMS 75 (269)
T ss_pred EEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEccccC
Confidence 34578889998888999999999 89999999999999999999999999 999999999998765433
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc--------ccc--------hHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP--------GFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
... .....+.++++++....+ +.++. +.. ...+..+++....+..+. .|||||+|
T Consensus 76 ~~~--~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LSgGq~q 150 (269)
T PRK11831 76 RSR--LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPS---ELSGGMAR 150 (269)
T ss_pred hhh--HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHHH
Confidence 211 001224567777663221 11111 000 112345566666677777 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 151 rv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 192 (269)
T PRK11831 151 RAALARAI-ALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA 192 (269)
T ss_pred HHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999999 889999999999998764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-23 Score=197.89 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=119.9
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+..
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~------------~p~~G~i~i~g~~~~~~~~~ 94 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI------------EPTSGKVLIDGQDIAAMSRK 94 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEccccChh
Confidence 457788899999999999999 99999999999999999999999999 99999999999876543321
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
.. .....+.++++++....+ +.++- ++ ....+..+++.+..+..|. .|||||+||++
T Consensus 95 ~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~Gq~qrv~ 170 (269)
T cd03294 95 EL-RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD---ELSGGMQQRVG 170 (269)
T ss_pred hh-hhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc---cCCHHHHHHHH
Confidence 10 000123577777663221 11110 11 1122445566666677777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.+++.++...
T Consensus 171 lAral-~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~ 209 (269)
T cd03294 171 LARAL-AVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209 (269)
T ss_pred HHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998654
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-22 Score=194.55 Aligned_cols=166 Identities=19% Similarity=0.180 Sum_probs=125.9
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.++++.++|.. ..++++|||++ +||+++|||.||||||||.++|+|+..+... ...+|+|.|+|.++.
T Consensus 3 ~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~-------~i~~G~i~f~g~~l~ 75 (316)
T COG0444 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA-------RIVGGEILFDGKDLL 75 (316)
T ss_pred eEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCC-------eEeeeEEEECCcccc
Confidence 34678888854 36999999999 9999999999999999999999999831100 346899999999987
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcc----------cCC----cc---------cchHHHHhCChh---HHhhhchhHH
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYL----------ADT----PG---------FNQPSLLKVTKQ---SLAQTFPEIK 264 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l----------~Dt----pg---------~~~~~l~~~~~~---~l~~~~p~~~ 264 (391)
.++++ ...+..-+.++++||+....+ .++ -+ .....+..+++. ...+.||.
T Consensus 76 ~l~~~-~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPh-- 152 (316)
T COG0444 76 SLSEK-ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH-- 152 (316)
T ss_pred cCCHH-HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCc--
Confidence 77764 111223467999999832111 110 00 112234455543 46789999
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+|||||+||+.||.|+ +.+|+++|.| |.....+++++|++++++...
T Consensus 153 -elSGGMrQRV~IAmal-a~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~ 205 (316)
T COG0444 153 -ELSGGMRQRVMIAMAL-ALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGT 205 (316)
T ss_pred -ccCCcHHHHHHHHHHH-hCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 9999999999 888999999999999985444
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-22 Score=199.65 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=121.1
Q ss_pred CCeeEEEEcCC----------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCccee
Q 016339 136 GYEPLFCSVES----------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (391)
Q Consensus 136 g~~~v~~s~~~----------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~ 204 (391)
.+++++++|.. ..++++|||+| +|++++|+|+||||||||+++|+|+. .|++|+|.+
T Consensus 7 ~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~------------~p~~G~i~~ 74 (327)
T PRK11308 7 QAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE------------TPTGGELYY 74 (327)
T ss_pred EEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC------------CCCCcEEEE
Confidence 35678888852 46899999999 99999999999999999999999999 899999999
Q ss_pred cCccccccccccCCCcceeeeEEEEeccCCCccc------CC--------ccc--------chHHHHhCChh-HHhhhch
Q 016339 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA------DT--------PGF--------NQPSLLKVTKQ-SLAQTFP 261 (391)
Q Consensus 205 ~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~------Dt--------pg~--------~~~~l~~~~~~-~l~~~~p 261 (391)
+|.++...+... .+...+.+++++++....+. +. .+. ....+..+++. ...+.+|
T Consensus 75 ~g~~l~~~~~~~--~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p 152 (327)
T PRK11308 75 QGQDLLKADPEA--QKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP 152 (327)
T ss_pred CCEEcCcCCHHH--HHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC
Confidence 998876544321 01123568899887321110 00 011 12234455653 4667788
Q ss_pred hHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 262 ~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
. +|||||+||++||+|+ +.+|+++|+| |......++++|.+++++.
T Consensus 153 ~---~LSgGq~QRv~iArAL-~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~ 204 (327)
T PRK11308 153 H---MFSGGQRQRIAIARAL-MLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL 204 (327)
T ss_pred c---cCCHHHHHHHHHHHHH-HcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc
Confidence 8 9999999999999999 9999999999 8899999999999997753
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-22 Score=182.70 Aligned_cols=147 Identities=18% Similarity=0.207 Sum_probs=110.1
Q ss_pred cCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcce
Q 016339 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~t 222 (391)
|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.. .... ....
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~-~~~~--~~~~ 66 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL------------RPQSGAVLIDGEPLDY-SRKG--LLER 66 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceeEEECCEEccc-cccc--hHHH
Confidence 35567899999999 99999999999999999999999999 9999999999987631 1110 0112
Q ss_pred eeeEEEEeccCC--C---cccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccccccccc
Q 016339 223 TRHVSLLPLSGG--G---YLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 223 tr~i~~v~~~~~--~---~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh 282 (391)
.+.++++++... . .+.++- +. ....+..+++.+..+..+. .|||||+||++||+|+
T Consensus 67 ~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~laral- 142 (190)
T TIGR01166 67 RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTH---CLSGGEKKRVAIAGAV- 142 (190)
T ss_pred HhhEEEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChh---hCCHHHHHHHHHHHHH-
Confidence 345777776531 1 111110 11 1122334566666677777 9999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+.+|+++|+| |+.....+.++|.++++
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 175 (190)
T TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175 (190)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999 88999999999988754
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-22 Score=191.78 Aligned_cols=155 Identities=16% Similarity=0.237 Sum_probs=118.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE------------EITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCChh
Confidence 578889998888999999999 99999999999999999999999999 99999999999876532111
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc--------cc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP--------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
. ....+.++++++....+ +.++- +. ....+..+++....+..+. .||+||+||+
T Consensus 72 ~---~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~qrv 145 (240)
T PRK09493 72 E---RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPS---ELSGGQQQRV 145 (240)
T ss_pred H---HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChh---hcCHHHHHHH
Confidence 0 01234567776653211 11110 00 1123345566666667776 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++++| |+.....+.++|.++.++
T Consensus 146 ~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 185 (240)
T PRK09493 146 AIARAL-AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE 185 (240)
T ss_pred HHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 999999 9999999999 889999999999998654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-22 Score=193.99 Aligned_cols=154 Identities=19% Similarity=0.292 Sum_probs=118.8
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++++++|+ +..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 5 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~ 72 (277)
T PRK13652 5 ETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL------------KPTSGSVLIRGEPITKEN 72 (277)
T ss_pred EEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCcCC
Confidence 3578899995 456999999999 99999999999999999999999999 999999999998764322
Q ss_pred cccCCCcceeeeEEEEeccCCC-----cccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG-----YLADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~-----~l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
.. ...+.++++++.... .+.++ .++ ....+..+++....+..|. .|||||+|
T Consensus 73 ~~-----~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~Gq~q 144 (277)
T PRK13652 73 IR-----EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPH---HLSGGEKK 144 (277)
T ss_pred HH-----HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcc---cCCHHHHH
Confidence 11 123456677665321 11111 011 1223445566666777777 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 145 rl~laraL-~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (277)
T PRK13652 145 RVAIAGVI-AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186 (277)
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999999 889999999999998765
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-22 Score=191.51 Aligned_cols=154 Identities=19% Similarity=0.270 Sum_probs=117.3
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 4 RTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL------------TPQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCCcEEEECCEEhHHCCH
Confidence 3578899998888999999999 89999999999999999999999999 8999999999976543221
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCc-------------------ccchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTP-------------------GFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------------------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.. ..+.++++++.... .+.++- ......+..+++....+..+. .|||||
T Consensus 72 ~~-----~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~ 143 (255)
T PRK11231 72 RQ-----LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT---DLSGGQ 143 (255)
T ss_pred HH-----HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc---cCCHHH
Confidence 10 12345555554211 111100 011122344566666677777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 144 ~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~ 187 (255)
T PRK11231 144 RQRAFLAMVL-AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ 187 (255)
T ss_pred HHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 9999999999 9999999999 889999999999988653
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-22 Score=190.13 Aligned_cols=152 Identities=21% Similarity=0.299 Sum_probs=117.3
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~p~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 4 EARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL------------SPDSGEVRLNGRPLADWSP 71 (258)
T ss_pred EEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEEcccCCH
Confidence 3578899998888999999999 89999999999999999999999999 9999999999976644322
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.. ..+.++++++.... .+.++. + .....+..+++.+..+..+. .|||||+||+
T Consensus 72 ~~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGe~qrv 143 (258)
T PRK13548 72 AE-----LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYP---QLSGGEQQRV 143 (258)
T ss_pred HH-----hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcc---cCCHHHHHHH
Confidence 11 12346666665322 111110 0 11223445566666677777 9999999999
Q ss_pred cccccccc------CCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHL------GEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 276 ~iaralh~------~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+||+|+ + .+|+++|+| |+.....+.++|.++.
T Consensus 144 ~la~al-~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 187 (258)
T PRK13548 144 QLARVL-AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLA 187 (258)
T ss_pred HHHHHH-hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 999999 7 599999999 8899999999999986
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-23 Score=186.30 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=117.9
Q ss_pred CeeEEEEcCCcc-chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~-~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
...++++|++.. ++++|||++ +|++++|+|||||||||+|++|++++ .|++|.|.++|.++..-+.
T Consensus 4 v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL------------~P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL------------IPDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred eeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc------------cCCCceEEEeecccccChH
Confidence 355677888876 999999999 89999999999999999999999999 9999999999987755443
Q ss_pred ccCCCcceeeeEEEEeccCCCcccCC-------------------cccchHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGYLADT-------------------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~l~Dt-------------------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
. ..++++.++-..+.|-.-| ..........+++.+.+++... .+|.||+||+
T Consensus 72 ~------vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~---~~S~G~kqkV 142 (245)
T COG4555 72 F------VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG---EFSTGMKQKV 142 (245)
T ss_pred H------HhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHh---hhchhhHHHH
Confidence 2 3466666663322221111 1111122234555666666555 8999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+||||+ +++|+++|+| |......+.+++..++.+...
T Consensus 143 ~iARAl-vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~ 185 (245)
T COG4555 143 AIARAL-VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRA 185 (245)
T ss_pred HHHHHH-hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcE
Confidence 999999 9999999999 778888999999988875444
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-22 Score=187.61 Aligned_cols=154 Identities=17% Similarity=0.159 Sum_probs=116.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 9 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI------------SPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred EEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCeEEECCEEcCcCCH
Confidence 3578888998888999999999 99999999999999999999999998 9999999999976643322
Q ss_pred ccCCCcceeeeEEEEeccCCC---cccCCc-------------ccchHHHHhCChh-HHhhhchhHHhhcCccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG---YLADTP-------------GFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~---~l~Dtp-------------g~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
. .....++++++.... .+.++- ......+..+++. .+.+..+. .||+||+||++|
T Consensus 77 ~-----~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LS~G~~qrv~l 148 (225)
T PRK10247 77 E-----IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIA---ELSGGEKQRISL 148 (225)
T ss_pred H-----HHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcc---cCCHHHHHHHHH
Confidence 1 022455666655221 111110 0112234445553 35566666 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 149 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (225)
T PRK10247 149 IRNL-QFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE 186 (225)
T ss_pred HHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999 9999999999 888999999999988654
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-22 Score=195.60 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=117.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.. ..
T Consensus 3 ~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~-~~ 69 (271)
T PRK13638 3 ATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL------------RPQKGAVLWQGKPLDY-SK 69 (271)
T ss_pred EEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCccEEEECCEEccc-cc
Confidence 3578999998888999999999 89999999999999999999999999 9999999999987631 11
Q ss_pred ccCCCcceeeeEEEEeccCCCc-----ccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY-----LADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~-----l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.. .....+.+++++++.... +.++ .+.. ...+..+++.++.+..+. .|||||+||
T Consensus 70 ~~--~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qr 144 (271)
T PRK13638 70 RG--LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQ---CLSHGQKKR 144 (271)
T ss_pred CC--HHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCch---hCCHHHHHH
Confidence 10 001224567777653211 1110 1111 112334455556666666 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+++ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 145 l~laraL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (271)
T PRK13638 145 VAIAGAL-VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ 185 (271)
T ss_pred HHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 9999999 9999999999 889999999999998753
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-22 Score=197.75 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=119.2
Q ss_pred CCeeEEEEc----CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSV----ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~----~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++++++| +...++++|||+| +|++++|+|+||||||||+++|+|+..+. ..|++|+|+|+|.++.
T Consensus 5 ~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~--------~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 5 DIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN--------WRVTADRMRFDDIDLL 76 (330)
T ss_pred EEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC--------CCCcceEEEECCEECC
Confidence 357888999 3456999999999 99999999999999999999999998210 0368999999998875
Q ss_pred ccccccCCCcceeeeEEEEeccCCCccc------CC----------cc-----------cchHHHHhCChh---HHhhhc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLA------DT----------PG-----------FNQPSLLKVTKQ---SLAQTF 260 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~------Dt----------pg-----------~~~~~l~~~~~~---~l~~~~ 260 (391)
..+.... .....+.+++++|+....+. ++ .+ .....+..+++. ...+.+
T Consensus 77 ~~~~~~~-~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 155 (330)
T PRK15093 77 RLSPRER-RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF 155 (330)
T ss_pred cCCHHHH-HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 5443210 00112468888887432110 00 00 011224445553 345677
Q ss_pred hhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 261 p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|. +|||||+||++||+|+ +.+|+++|+| |+.....++++|.++.++
T Consensus 156 p~---~LSgG~~QRv~iArAL-~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 207 (330)
T PRK15093 156 PY---ELTEGECQKVMIAIAL-ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN 207 (330)
T ss_pred ch---hCCHHHHHHHHHHHHH-HCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 88 9999999999999999 9999999999 889999999999999764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-22 Score=214.31 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=127.9
Q ss_pred hcCCeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 134 TWGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 134 ~~g~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+.++++++.|+.. .+|+++|+++ +|+++||+|+||||||||+++|.|++ .|++|+|.+||.+++
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly------------~p~~G~I~~dg~dl~ 538 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY------------KPQQGRILLDGVDLN 538 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEeHH
Confidence 35579999999776 6999999999 89999999999999999999999999 999999999999998
Q ss_pred ccccccCCCcceeeeEEEEecc---CCCcccCC-----cccchHHH----HhCChhHHhhhch--------hHHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLS---GGGYLADT-----PGFNQPSL----LKVTKQSLAQTFP--------EIKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt-----pg~~~~~l----~~~~~~~l~~~~p--------~~~~~LSgG 270 (391)
.++... .++++++++|+ +.+.+.|+ |....+.+ ...+..+.....| |....||||
T Consensus 539 ~i~~~~-----lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 539 DIDLAS-----LRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred hcCHHH-----HHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 887754 67899999998 34555444 44442222 2223333333333 233469999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||++||||+ +++|+++|+| |++..+.+.+.|.++...
T Consensus 614 QrQrlalARaL-l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~ 658 (709)
T COG2274 614 QRQRLALARAL-LSKPKILLLDEATSALDPETEAIILQNLLQILQG 658 (709)
T ss_pred HHHHHHHHHHh-ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcC
Confidence 99999999999 9999999999 899999999988887644
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-22 Score=189.10 Aligned_cols=155 Identities=12% Similarity=0.178 Sum_probs=115.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 5 TAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV------------PRDAGNIIIDDEDISLLPL 72 (241)
T ss_pred EEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCH
Confidence 4578889998888999999999 99999999999999999999999999 9999999999977643322
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCc--------c--------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTP--------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtp--------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.. .....++++++.... .+.++. . .....+..+++....+..+. .|||||+||
T Consensus 73 ~~----~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qr 145 (241)
T PRK10895 73 HA----RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQ---SLSGGERRR 145 (241)
T ss_pred HH----HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchh---hCCHHHHHH
Confidence 10 012345666655221 111110 0 01122334455555555566 899999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....+.+++.+++..
T Consensus 146 v~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (241)
T PRK10895 146 VEIARAL-AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186 (241)
T ss_pred HHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 9999999 9999999999 888999999999988653
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-22 Score=192.23 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=119.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE------------PIDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred EEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccccc
Confidence 578899998888999999999 99999999999999999999999999 99999999999877543200
Q ss_pred cC--------CCcceeeeEEEEeccCCCc----ccCCc--------cc--------chHHHHhCChhHHhhhchhHHhhc
Q 016339 216 SG--------RGKHTTRHVSLLPLSGGGY----LADTP--------GF--------NQPSLLKVTKQSLAQTFPEIKEML 267 (391)
Q Consensus 216 ~~--------~~~~ttr~i~~v~~~~~~~----l~Dtp--------g~--------~~~~l~~~~~~~l~~~~p~~~~~L 267 (391)
.+ ......+.++++++....+ +.++- ++ ....+..+++....+..|. .|
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~L 147 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPA---QL 147 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChh---hc
Confidence 00 0001234577777763221 11110 11 1122334556566666676 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 148 S~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 195 (252)
T TIGR03005 148 SGGQQQRVAIARAL-AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE 195 (252)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999 888999999999998764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-22 Score=192.17 Aligned_cols=155 Identities=14% Similarity=0.179 Sum_probs=119.2
Q ss_pred cCCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|+ +..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++..
T Consensus 8 l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~i~~ 75 (271)
T PRK13632 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL------------KPQSGEIKIDGITISK 75 (271)
T ss_pred EEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEecCc
Confidence 34688999995 457999999999 89999999999999999999999999 9999999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCC-----CcccCCc-------ccc--------hHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADTP-------GFN--------QPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~-----~~l~Dtp-------g~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.+.. ...+.+++++++.. ..+.++- ++. ...+..+++....+..+. .|||||
T Consensus 76 ~~~~-----~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~ 147 (271)
T PRK13632 76 ENLK-----EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQ---NLSGGQ 147 (271)
T ss_pred CCHH-----HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcc---cCCHHH
Confidence 2211 12345777776531 1111110 111 122344566666677777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....++++|.++..+
T Consensus 148 ~qrl~laral-~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~ 191 (271)
T PRK13632 148 KQRVAIASVL-ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT 191 (271)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 889999999999998764
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-22 Score=185.96 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=114.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.. .
T Consensus 4 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~-~- 69 (207)
T PRK13539 4 EGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL------------PPAAGTIKLDGGDIDD-P- 69 (207)
T ss_pred EEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEeCcc-h-
Confidence 3578899998888999999999 99999999999999999999999999 8999999999876421 1
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCc-------c----cchHHHHhCChhHHhhhchhHHhhcCccccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTP-------G----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
. ..+.++++++.... .+.++. + .....+..+++..+.+..+. .|||||+||++||+
T Consensus 70 --~----~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl~la~ 140 (207)
T PRK13539 70 --D----VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFG---YLSAGQKRRVALAR 140 (207)
T ss_pred --h----hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChh---hcCHHHHHHHHHHH
Confidence 0 12234444432111 111110 0 11223445566666666666 99999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 141 al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (207)
T PRK13539 141 LL-VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176 (207)
T ss_pred HH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 99 9999999999 888999999999987543
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-22 Score=187.83 Aligned_cols=159 Identities=17% Similarity=0.247 Sum_probs=117.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 5 EVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE------------QPEAGTIRVGDITIDTARS 72 (250)
T ss_pred EEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEcccccc
Confidence 4578899998888999999999 99999999999999999999999999 8999999999987643211
Q ss_pred cc---CCCcceeeeEEEEeccCCCc----ccCCc--------cc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KS---GRGKHTTRHVSLLPLSGGGY----LADTP--------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~---~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.. .......+.++++++....+ +.++. +. ....+..+++....+..+. .|||||
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~Gq 149 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPR---RLSGGQ 149 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChh---hCChHH
Confidence 00 00011234577777653211 11111 00 1112333455445566666 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 150 ~qrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 193 (250)
T PRK11264 150 QQRVAIARAL-AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE 193 (250)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 889999999999988653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=183.52 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=116.1
Q ss_pred CeeEEEEcCCc----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~~----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++. .+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~ 71 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL------------KPTSGSIIFDGKDLLK 71 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEccc
Confidence 57888899765 7999999999 99999999999999999999999999 9999999999987754
Q ss_pred cccccCCCcceeeeEEEEeccCC------CcccCCc---------ccc--------hHHHHhCChh-HHhhhchhHHhhc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG------GYLADTP---------GFN--------QPSLLKVTKQ-SLAQTFPEIKEML 267 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~------~~l~Dtp---------g~~--------~~~l~~~~~~-~l~~~~p~~~~~L 267 (391)
.+... .....+.++++++... ..+.++- ... ...+..+++. ...+..+. .|
T Consensus 72 ~~~~~--~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~L 146 (228)
T cd03257 72 LSRRL--RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPH---EL 146 (228)
T ss_pred cchhh--HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCch---hc
Confidence 33210 0012346777776631 1111110 000 0122334442 34555666 89
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 147 S~G~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (228)
T cd03257 147 SGGQRQRVAIARAL-ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE 194 (228)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999 888999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-22 Score=187.53 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=117.0
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC-----CCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~-----~G~I~~~g~~v 209 (391)
.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. .|+ +|+|+++|.++
T Consensus 3 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 3 EIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN------------DLVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred EEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC------------CCCcCCCCceEEEECCEEc
Confidence 3578999998888999999999 99999999999999999999999999 777 99999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc---ccCC-------ccc---------chHHHHhCChh----HHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADT-------PGF---------NQPSLLKVTKQ----SLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-------pg~---------~~~~l~~~~~~----~l~~~~p~~~~~ 266 (391)
...+... ....+.++++++....+ +.++ .+. ....+..+++. ...+..+. .
T Consensus 71 ~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~ 144 (247)
T TIGR00972 71 YDKKIDV---VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSAL---G 144 (247)
T ss_pred cccccch---HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc---c
Confidence 5321100 01235677777763221 1111 010 01123334443 44555666 9
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 145 LSgG~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 193 (247)
T TIGR00972 145 LSGGQQQRLCIARAL-AVEPEVLLLDEPTSALDPIATGKIEELIQELKKK 193 (247)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999 9999999999 889999999999998653
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-22 Score=191.83 Aligned_cols=155 Identities=17% Similarity=0.261 Sum_probs=119.4
Q ss_pred CCeeEEEEcCC------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 136 GYEPLFCSVES------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 136 g~~~v~~s~~~------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
.+++++++|.+ ..++++++|++ +|++++|+||||||||||+++|+|+. .|++|+|.++|.+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~i~g~~ 73 (280)
T PRK13633 6 KCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL------------IPSEGKVYVDGLD 73 (280)
T ss_pred EEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEe
Confidence 45788999963 46999999999 89999999999999999999999999 9999999999987
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCc-----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcC
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY-----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLK 268 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~-----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LS 268 (391)
+...... ....+.+++++++.... +.++ .+. ....+..+++..+.+..|. .||
T Consensus 74 i~~~~~~----~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LS 146 (280)
T PRK13633 74 TSDEENL----WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPH---LLS 146 (280)
T ss_pred ccccccH----HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc---cCC
Confidence 7532210 01234567777653211 1110 011 1223445677777777787 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 147 ~G~~qrv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 193 (280)
T PRK13633 147 GGQKQRVAIAGIL-AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK 193 (280)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999 889999999999998754
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-23 Score=206.82 Aligned_cols=156 Identities=18% Similarity=0.248 Sum_probs=118.9
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
+.+...|+...+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+...
T Consensus 32 ~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~------------~p~sG~I~i~G~~i~~~~~~~ 99 (400)
T PRK10070 32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI------------EPTRGQVLIDGVDIAKISDAE 99 (400)
T ss_pred HHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC------------CCCCCEEEECCEECCcCCHHH
Confidence 34455566667899999999 89999999999999999999999999 999999999998875443211
Q ss_pred CCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccccccc
Q 016339 217 GRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 217 ~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
. .....+.++++++....+ +.++- ++ ....+..+++.+..+.+|. .|||||+||++|
T Consensus 100 l-~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~---~LSgGq~QRv~L 175 (400)
T PRK10070 100 L-REVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD---ELSGGMRQRVGL 175 (400)
T ss_pred H-HHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc---cCCHHHHHHHHH
Confidence 0 000124577888764322 11110 11 1123455677777788888 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 176 ArAL-~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~ 213 (400)
T PRK10070 176 ARAL-AINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213 (400)
T ss_pred HHHH-hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999 899999999999998754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-22 Score=196.45 Aligned_cols=158 Identities=13% Similarity=0.198 Sum_probs=119.5
Q ss_pred CCeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+++++++|.+ ..+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~------------~p~~G~i~~~g~~i 71 (286)
T PRK13646 4 RFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL------------KPTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEC
Confidence 45788999964 35999999999 89999999999999999999999999 99999999999877
Q ss_pred cccccccCCCcceeeeEEEEeccCC--C---cccCCc-------cc--------chHHHHhCChh-HHhhhchhHHhhcC
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGG--G---YLADTP-------GF--------NQPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~--~---~l~Dtp-------g~--------~~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
...+... ......+.+++++++.. . .+.++- +. ....+..+++. ...+..|. .||
T Consensus 72 ~~~~~~~-~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---~LS 147 (286)
T PRK13646 72 THKTKDK-YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPF---QMS 147 (286)
T ss_pred ccccccc-hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcc---cCC
Confidence 5422110 00113456788887531 1 111110 11 11234455664 45666777 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.+++.+++.+
T Consensus 148 gGq~qrv~laraL-~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~ 194 (286)
T PRK13646 148 GGQMRKIAIVSIL-AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194 (286)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999 899999999999998764
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-22 Score=190.68 Aligned_cols=160 Identities=15% Similarity=0.061 Sum_probs=112.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+..+++++.|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|+++|..+....
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~ 90 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY------------PPDSGTVTVRGRVSSLLG 90 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEchhhc
Confidence 44567788899999999999999 99999999999999999999999999 999999999997654222
Q ss_pred cccCCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEe
Q 016339 214 TKSGRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (391)
Q Consensus 214 ~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lll 291 (391)
......+..| .++.+.....+....+........+..+++.+..+..+. .|||||+||++||+|+ +.+|+++|+
T Consensus 91 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrv~laral-~~~p~llll 166 (224)
T cd03220 91 LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVK---TYSSGMKARLAFAIAT-ALEPDILLI 166 (224)
T ss_pred ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHHHHHHHHHHH-hcCCCEEEE
Confidence 1111111111 111100000000000000011122334556666666666 9999999999999999 999999999
Q ss_pred c------CHHHHHHHHHHHHHHHHH
Q 016339 292 G------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 292 D------D~~~~~~~~~ll~el~~~ 310 (391)
| |+.....+.+++.++..+
T Consensus 167 DEP~~gLD~~~~~~~~~~l~~~~~~ 191 (224)
T cd03220 167 DEVLAVGDAAFQEKCQRRLRELLKQ 191 (224)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhC
Confidence 9 888899999999987654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-22 Score=178.56 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=108.9
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...++.
T Consensus 3 ~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE------------EPDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred EEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccchh
Confidence 478889998888999999999 89999999999999999999999999 99999999999876544310
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
. ....+.++++++....+ . ... ....+.. .||+||+||++||+|+ +.+|+++++|
T Consensus 71 ~---~~~~~~i~~~~q~~~~~--~--~~t--~~~~l~~------------~lS~G~~qr~~la~al-~~~p~llilDEP~ 128 (178)
T cd03229 71 L---PPLRRRIGMVFQDFALF--P--HLT--VLENIAL------------GLSGGQQQRVALARAL-AMDPDVLLLDEPT 128 (178)
T ss_pred H---HHHhhcEEEEecCCccC--C--CCC--HHHheee------------cCCHHHHHHHHHHHHH-HCCCCEEEEeCCc
Confidence 0 11235677777653211 0 000 0011100 1999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.+++.++.++
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~ 149 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQ 149 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHh
Confidence 889999999999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=185.10 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=111.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+.. .+|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS----------YEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred EeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCC----------CCCCcceEEECCEecCCCCHH
Confidence 578899998888999999999 899999999999999999999999940 068999999999876543221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC--------cc------c--------chHHHHhCChh-HHhhhchhHHhhcC
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT--------PG------F--------NQPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt--------pg------~--------~~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
.. ....++++++....+ +.++ .. . ....+..+++. .+.+..+. ..||
T Consensus 73 ~~----~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~LS 146 (243)
T TIGR01978 73 ER----ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN--EGFS 146 (243)
T ss_pred Hh----hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc--cCcC
Confidence 10 122355666553211 0000 00 0 01112223332 23333332 1499
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||+||++||+++ +.+|+++|+| |+.....+.++|.++.+
T Consensus 147 ~G~~qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 192 (243)
T TIGR01978 147 GGEKKRNEILQMA-LLEPKLAILDEIDSGLDIDALKIVAEGINRLRE 192 (243)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999 88999999999999865
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-22 Score=197.14 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=119.2
Q ss_pred CCeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.++++.++|+. ..+|++|||+| +|++++|+||||||||||+++|+|+. .|++|+|.++|.++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i 71 (290)
T PRK13634 4 TFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL------------QPTSGTVTIGERVI 71 (290)
T ss_pred EEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECCEEC
Confidence 46789999964 46999999999 99999999999999999999999999 99999999999877
Q ss_pred cccccccCCCcceeeeEEEEeccCCC-----cccCC-------ccc--------chHHHHhCChh-HHhhhchhHHhhcC
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADT-------PGF--------NQPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~-----~l~Dt-------pg~--------~~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
........ .....+.+++++++... .+.++ .+. ....+..+++. .+.+..|. .||
T Consensus 72 ~~~~~~~~-~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---~LS 147 (290)
T PRK13634 72 TAGKKNKK-LKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPF---ELS 147 (290)
T ss_pred ccccccch-HHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcc---cCC
Confidence 43211000 00123457777775311 11111 011 12234456664 55677777 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....++++|.++..+
T Consensus 148 gGq~qrv~lAraL-~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~ 194 (290)
T PRK13634 148 GGQMRRVAIAGVL-AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE 194 (290)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999 889999999999998765
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-22 Score=186.38 Aligned_cols=156 Identities=12% Similarity=0.218 Sum_probs=114.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 6 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~ 73 (237)
T PRK11614 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP------------RATSGRIVFDGKDITDWQ 73 (237)
T ss_pred EEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCceEEECCEecCCCC
Confidence 34578899998888999999999 99999999999999999999999999 999999999998764432
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------ccc------hHHHHhC-ChhHHhhhchhHHhhcCccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GFN------QPSLLKV-TKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~~------~~~l~~~-~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
... ...+.++++++....+ +.++- ... ...+..+ ++.+..+..+. .|||||+||+
T Consensus 74 ~~~----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~---~LS~G~~qrl 146 (237)
T PRK11614 74 TAK----IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAG---TMSGGEQQML 146 (237)
T ss_pred HHH----HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchh---hCCHHHHHHH
Confidence 210 0224466766653211 11110 000 0111122 12333344455 8999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 147 ~la~al-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (237)
T PRK11614 147 AIGRAL-MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186 (237)
T ss_pred HHHHHH-HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC
Confidence 999999 9999999999 889999999999988654
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-22 Score=186.10 Aligned_cols=149 Identities=21% Similarity=0.277 Sum_probs=113.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|+... .++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.++|.++.....
T Consensus 4 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~- 68 (232)
T PRK10771 4 LTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL------------TPASGSLTLNGQDHTTTPP- 68 (232)
T ss_pred EEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCeecCcCCh-
Confidence 578899997543 3899999 89999999999999999999999999 9999999999986643221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC------cc---------cchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT------PG---------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt------pg---------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++ +. .....+..+++....+..|. .|||||+||++
T Consensus 69 ------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~ 139 (232)
T PRK10771 69 ------SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG---QLSGGQRQRVA 139 (232)
T ss_pred ------hhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc---cCCHHHHHHHH
Confidence 113455555542111 1110 00 11223445677777778887 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 140 laral-~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~ 178 (232)
T PRK10771 140 LARCL-VREQPILLLDEPFSALDPALRQEMLTLVSQVCQE 178 (232)
T ss_pred HHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998654
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-22 Score=181.67 Aligned_cols=149 Identities=12% Similarity=0.150 Sum_probs=112.6
Q ss_pred CCeeEEEEcC----CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC---CCCCcceecCc
Q 016339 136 GYEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQ 207 (391)
Q Consensus 136 g~~~v~~s~~----~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~---p~~G~I~~~g~ 207 (391)
.++++.++|. +..++++++|.+ +|++++|+||||||||||+++|+|+. + |++|+|+++|.
T Consensus 5 ~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~~~~G~i~i~g~ 72 (202)
T cd03233 5 SWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT------------EGNVSVEGDIHYNGI 72 (202)
T ss_pred EEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC------------CCCCCcceEEEECCE
Confidence 4578899995 346899999999 89999999999999999999999998 6 89999999998
Q ss_pred cccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCc
Q 016339 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287 (391)
Q Consensus 208 ~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~ 287 (391)
++..... ...+.++++++....+..-+ .. ..+. +......+..+. .||+||+||++||+|+ +.+|+
T Consensus 73 ~~~~~~~------~~~~~i~~~~q~~~~~~~~t--v~-~~l~-~~~~~~~~~~~~---~LS~Ge~qrl~laral-~~~p~ 138 (202)
T cd03233 73 PYKEFAE------KYPGEIIYVSEEDVHFPTLT--VR-ETLD-FALRCKGNEFVR---GISGGERKRVSIAEAL-VSRAS 138 (202)
T ss_pred ECccchh------hhcceEEEEecccccCCCCc--HH-HHHh-hhhhhccccchh---hCCHHHHHHHHHHHHH-hhCCC
Confidence 7654321 13456788877532211111 11 1111 100000345555 8999999999999999 99999
Q ss_pred EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 288 CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 288 ~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++|+| |+.....+.+++.++.++
T Consensus 139 llllDEPt~~LD~~~~~~~~~~l~~~~~~ 167 (202)
T cd03233 139 VLCWDNSTRGLDSSTALEILKCIRTMADV 167 (202)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999 889999999999998664
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-22 Score=183.56 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=114.4
Q ss_pred CCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.++++.++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|..+...
T Consensus 4 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~ 71 (220)
T cd03245 4 EFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY------------KPTSGSVLLDGTDIRQL 71 (220)
T ss_pred EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCeEEECCEEhHHC
Confidence 45788889975 46999999999 99999999999999999999999999 89999999999765432
Q ss_pred ccccCCCcceeeeEEEEeccCCCc---ccCCc-----c----cchHHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY---LADTP-----G----FNQPSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-----g----~~~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... ..+.++++++....+ +.++- . .....+..+++.++.+.+|. ....|||||+
T Consensus 72 ~~~~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 72 DPAD-----LRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred CHHH-----HHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 2110 123456666552211 11110 0 01122334455566665541 1138999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 147 qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 188 (220)
T cd03245 147 QAVALARAL-LNDPPILLLDEPTSAMDMNSEERLKERLRQLLG 188 (220)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC
Confidence 999999999 9999999999 88899999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-22 Score=204.57 Aligned_cols=155 Identities=18% Similarity=0.176 Sum_probs=118.9
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc----ccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ----RVGEV 212 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~----~v~~v 212 (391)
..+..+|+...+++++||++ +|++++|+||||||||||+++|+|++ +|++|+|+++|. ++...
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~------------~p~~G~I~idG~~~~~~i~~~ 95 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN------------PVSRGSVLVKDGDGSIDVANC 95 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECCEecccccccC
Confidence 34556788888999999999 99999999999999999999999999 999999999985 33222
Q ss_pred ccccCCCcce-eeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 213 STKSGRGKHT-TRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~t-tr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
+... .+.. .+.++++++.+..+ +.++. +. ....+..+++....+.+|. +|||||+
T Consensus 96 ~~~~--l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~---~LSgGq~ 170 (382)
T TIGR03415 96 DAAT--LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPG---ELSGGMQ 170 (382)
T ss_pred CHHH--HHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHH
Confidence 2110 0111 24678888775432 12211 11 1223456677777788888 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||||+ +.+|+++|+| |+.....++++|.++..+
T Consensus 171 QRV~LARAL-a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~ 213 (382)
T TIGR03415 171 QRVGLARAF-AMDADILLMDEPFSALDPLIRTQLQDELLELQAK 213 (382)
T ss_pred HHHHHHHHH-hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 899999999999998764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-21 Score=183.22 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=118.2
Q ss_pred CeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|++ +|++|+|+++|.++..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~ 71 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR------------SVQEGSLKVLGQELYG 71 (220)
T ss_pred EEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEhHh
Confidence 4678888865 56999999999 89999999999999999999999999 9999999999987754
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCC--------cc--------cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADT--------PG--------FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt--------pg--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.+... .....+.++++++....+ +.++ +. .....+..+++.+..+..|. .||+||
T Consensus 72 ~~~~~--~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~lS~G~ 146 (220)
T TIGR02982 72 ASEKE--LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH---NLSGGQ 146 (220)
T ss_pred cCHhH--HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChh---hCCHHH
Confidence 33211 001234566666652211 1110 01 11223445666666677777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++++| |+.....+.++|.++..+
T Consensus 147 ~qrv~laral-~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~ 190 (220)
T TIGR02982 147 KQRVAIARAL-VHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190 (220)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999 889999999999998653
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=187.08 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=118.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 3 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~ 70 (256)
T TIGR03873 3 RLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL------------RPDAGTVDLAGVDLHGLSR 70 (256)
T ss_pred eEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCCEEEECCEEcccCCH
Confidence 4578899998888999999999 89999999999999999999999999 9999999999987654332
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCcc-------------------cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPG-------------------FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtpg-------------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.. ..+.++++++.... .+.++.. .....+..+++.++.+..+. .|||||
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~ 142 (256)
T TIGR03873 71 RA-----RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS---TLSGGE 142 (256)
T ss_pred HH-----HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc---cCCHHH
Confidence 11 12345666655321 1111100 01122344556666666676 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.+++++
T Consensus 143 ~qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (256)
T TIGR03873 143 RQRVHVARAL-AQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT 186 (256)
T ss_pred HHHHHHHHHH-hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 889999999999998753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-22 Score=185.89 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=116.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.. .
T Consensus 3 l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~~~~~~~---~ 67 (223)
T TIGR03740 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL------------RPTSGEIIFDGHPWTR---K 67 (223)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEeccc---c
Confidence 578889998888999999999 99999999999999999999999999 9999999999876531 1
Q ss_pred cCCCcceeeeEEEEeccCCC----cccCCc-------c----cchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGG----YLADTP-------G----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
..+.++++++.... .+.++. + .....+..+++.+..+..+. .|||||+||++||+|
T Consensus 68 ------~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~~rv~lara 138 (223)
T TIGR03740 68 ------DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAK---QFSLGMKQRLGIAIA 138 (223)
T ss_pred ------ccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHh---hCCHHHHHHHHHHHH
Confidence 11346666654221 111110 1 11223445566666666676 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 139 l-~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~ 173 (223)
T TIGR03740 139 L-LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173 (223)
T ss_pred H-hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC
Confidence 9 9999999999 889999999999998643
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-22 Score=195.31 Aligned_cols=158 Identities=19% Similarity=0.199 Sum_probs=118.2
Q ss_pred CCeeEEEEcCCc-----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~-----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+++++++|+.. .+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++
T Consensus 3 ~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i 70 (288)
T PRK13643 3 KFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL------------QPTEGKVTVGDIVV 70 (288)
T ss_pred EEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC------------CCCCcEEEECCEEC
Confidence 357889999642 4899999999 99999999999999999999999999 99999999999887
Q ss_pred cccccccCCCcceeeeEEEEeccCC-----CcccCCc-------cc--------chHHHHhCChh-HHhhhchhHHhhcC
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGG-----GYLADTP-------GF--------NQPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~-----~~l~Dtp-------g~--------~~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
........ .....+.+++++++.. ..+.++- +. ....+..+++. .+.+..|. .||
T Consensus 71 ~~~~~~~~-~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~---~LS 146 (288)
T PRK13643 71 SSTSKQKE-IKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF---ELS 146 (288)
T ss_pred cccccccc-HHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc---cCC
Confidence 43211100 0112356778887531 1111110 11 11223445653 45667777 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+++ +.+|+++|+| |+.....+.+++.++++.
T Consensus 147 gGqkqrvaiA~aL-~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~ 193 (288)
T PRK13643 147 GGQMRRVAIAGIL-AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS 193 (288)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC
Confidence 9999999999999 9999999999 889999999999998753
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-22 Score=196.29 Aligned_cols=159 Identities=17% Similarity=0.191 Sum_probs=118.7
Q ss_pred CCeeEEEEcCCc-----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~-----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+++++++|++. .+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~------------~p~~G~i~~~g~~~ 71 (305)
T PRK13651 4 KVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL------------LPDTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEEeceec
Confidence 457889999653 5899999999 99999999999999999999999999 99999999987654
Q ss_pred ccccc-------------cc------CCCcceeeeEEEEeccCCC-c----ccCC-------ccc--------chHHHHh
Q 016339 210 GEVST-------------KS------GRGKHTTRHVSLLPLSGGG-Y----LADT-------PGF--------NQPSLLK 250 (391)
Q Consensus 210 ~~v~~-------------~~------~~~~~ttr~i~~v~~~~~~-~----l~Dt-------pg~--------~~~~l~~ 250 (391)
..... .. .......+.+++++++... + +.++ .+. ....+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 151 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIEL 151 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence 21100 00 0001123568888885311 1 1111 011 1223445
Q ss_pred CChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 251 VTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 251 ~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+++. ++.++.|. .|||||+||++||+|+ +.+|+++|+| |+.....+++++.+++..
T Consensus 152 ~gL~~~~~~~~~~---~LSgGqkqrvalA~aL-~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 214 (305)
T PRK13651 152 VGLDESYLQRSPF---ELSGGQKRRVALAGIL-AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ 214 (305)
T ss_pred cCCChhhhhCChh---hCCHHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 6664 56777888 9999999999999999 9999999999 889999999999998743
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-22 Score=184.12 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=115.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|.. .+.++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.....
T Consensus 3 ~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~- 67 (213)
T TIGR01277 3 LDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI------------EPASGSIKVNDQSHTGLAP- 67 (213)
T ss_pred EEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEcccCCh-
Confidence 4778888863 467899999 89999999999999999999999999 9999999999987643211
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCcc---------------cchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTPG---------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtpg---------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++.. .....+..+++.++.+..|. .||+||+||++
T Consensus 68 ------~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl~ 138 (213)
T TIGR01277 68 ------YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---QLSGGQRQRVA 138 (213)
T ss_pred ------hccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc---cCCHHHHHHHH
Confidence 234566766653211 111110 11223445666666777777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+++ +.+|+++|+| |+.....+.++|.++.++
T Consensus 139 laral-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 177 (213)
T TIGR01277 139 LARCL-VRPNPILLLDEPFSALDPLLREEMLALVKQLCSE 177 (213)
T ss_pred HHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998754
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=187.68 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=117.2
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC---CCcceecCccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGE 211 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~---~G~I~~~g~~v~~ 211 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|+ +|+|+++|.++..
T Consensus 6 ~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~p~~~~~G~i~~~g~~~~~ 73 (262)
T PRK09984 6 RVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI------------TGDKSAGSHIELLGRTVQR 73 (262)
T ss_pred EEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC------------CCCCCCceEEEECCEeccc
Confidence 3578899998888999999999 99999999999999999999999998 654 5999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc-----------------------ccchHHHHhCChhHHhhhchhHH
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-----------------------GFNQPSLLKVTKQSLAQTFPEIK 264 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-----------------------g~~~~~l~~~~~~~l~~~~p~~~ 264 (391)
............+.++++++....+ +.++. ......+..+++....+..+.
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 151 (262)
T PRK09984 74 EGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS-- 151 (262)
T ss_pred ccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc--
Confidence 2110000011234466666653211 11110 001223344566666677777
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.||+||+||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 152 -~LS~G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 201 (262)
T PRK09984 152 -TLSGGQQQRVAIARAL-MQQAKVILADEPIASLDPESARIVMDTLRDINQN 201 (262)
T ss_pred -ccCHHHHHHHHHHHHH-hcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 9999999999 889999999999998764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-22 Score=189.91 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=116.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-cccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-~v~~v~ 213 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.+++. .++.++
T Consensus 6 ~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~------------~p~~G~i~~~~~~~i~~v~ 73 (251)
T PRK09544 6 SLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV------------APDEGVIKRNGKLRIGYVP 73 (251)
T ss_pred EEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCccCEEEec
Confidence 3578899998888999999999 99999999999999999999999999 999999998763 456666
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG- 292 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD- 292 (391)
+.+....+.+..+.. ..... ...........+..+++.+..+..+. .|||||+||++||+|+ +.+|+++|+|
T Consensus 74 q~~~~~~~l~~~~~~-~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~---~LSgGq~qrv~laral-~~~p~lllLDE 146 (251)
T PRK09544 74 QKLYLDTTLPLTVNR-FLRLR--PGTKKEDILPALKRVQAGHLIDAPMQ---KLSGGETQRVLLARAL-LNRPQLLVLDE 146 (251)
T ss_pred cccccccccChhHHH-HHhcc--ccccHHHHHHHHHHcCChHHHhCChh---hCCHHHHHHHHHHHHH-hcCCCEEEEeC
Confidence 654322211100000 00000 00001112334556777777777777 9999999999999999 9999999999
Q ss_pred -----CHHHHHHHHHHHHHHHHH
Q 016339 293 -----DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 -----D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.++|.++.++
T Consensus 147 Pt~~LD~~~~~~l~~~L~~~~~~ 169 (251)
T PRK09544 147 PTQGVDVNGQVALYDLIDQLRRE 169 (251)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999988654
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=176.42 Aligned_cols=135 Identities=20% Similarity=0.309 Sum_probs=107.8
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~- 69 (173)
T cd03230 3 VRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL------------KPDSGEIKVLGKDIKKEPE- 69 (173)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEcccchH-
Confidence 467888888778999999999 99999999999999999999999999 8999999999987643221
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
.....+++++++...+ ++.. .... + .|||||+||++||+++ +.+|+++|+|
T Consensus 70 -----~~~~~i~~~~q~~~~~----~~~t--v~~~-----~---------~LS~G~~qrv~laral-~~~p~illlDEPt 123 (173)
T cd03230 70 -----EVKRRIGYLPEEPSLY----ENLT--VREN-----L---------KLSGGMKQRLALAQAL-LHDPELLILDEPT 123 (173)
T ss_pred -----hhhccEEEEecCCccc----cCCc--HHHH-----h---------hcCHHHHHHHHHHHHH-HcCCCEEEEeCCc
Confidence 1235678888763211 1110 0001 1 1999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.+++.++.++
T Consensus 124 ~~LD~~~~~~l~~~l~~~~~~ 144 (173)
T cd03230 124 SGLDPESRREFWELLRELKKE 144 (173)
T ss_pred cCCCHHHHHHHHHHHHHHHHC
Confidence 889999999999998654
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-21 Score=179.94 Aligned_cols=144 Identities=19% Similarity=0.306 Sum_probs=111.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+.. ..|++|+|.++|.++......
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~----------~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK----------YEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred EEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc----------CCCCccEEEECCEECCcCCHH
Confidence 578899998888999999999 899999999999999999999999930 078999999999877654322
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
.. ....++++++....+ ++.. ..++...++. .|||||+||++||+++ +.+|+++++|
T Consensus 73 ~~----~~~~i~~v~q~~~~~----~~~~--------~~~~l~~~~~---~LS~G~~qrv~laral-~~~p~illlDEPt 132 (200)
T cd03217 73 ER----ARLGIFLAFQYPPEI----PGVK--------NADFLRYVNE---GFSGGEKKRNEILQLL-LLEPDLAILDEPD 132 (200)
T ss_pred HH----hhCcEEEeecChhhc----cCcc--------HHHHHhhccc---cCCHHHHHHHHHHHHH-hcCCCEEEEeCCC
Confidence 10 123477777653211 1111 1122234444 8999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.++|.++.+.
T Consensus 133 ~~LD~~~~~~l~~~L~~~~~~ 153 (200)
T cd03217 133 SGLDIDALRLVAEVINKLREE 153 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHHC
Confidence 888999999999998653
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-22 Score=184.73 Aligned_cols=160 Identities=18% Similarity=0.214 Sum_probs=115.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+..+ ....|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-------~~~~~~~G~i~~~g~~~~~~~~~ 75 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDL-------IPGAPDEGEVLLDGKDIYDLDVD 75 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccc-------ccCCCCCeEEEECCEEhhhcchH
Confidence 578899998888999999999 9999999999999999999999998610 01157899999999876443210
Q ss_pred cCCCcceeeeEEEEeccCCCc---ccCCc-------cc---------chHHHHhCChhHHhhhc--hhHHhhcCcccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY---LADTP-------GF---------NQPSLLKVTKQSLAQTF--PEIKEMLKANEPAK 274 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~---------~~~~l~~~~~~~l~~~~--p~~~~~LSgGq~qr 274 (391)
. ....+.++++++....+ +.++- +. ....+..+++....+.. +. .|||||+||
T Consensus 76 ~---~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---~LSgG~~qr 149 (227)
T cd03260 76 V---LELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHAL---GLSGGQQQR 149 (227)
T ss_pred H---HHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcc---cCCHHHHHH
Confidence 0 01234567777663221 11110 00 01123344444444443 35 899999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 150 v~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 190 (227)
T cd03260 150 LCLARAL-ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE 190 (227)
T ss_pred HHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC
Confidence 9999999 9999999999 889999999999998654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-22 Score=194.22 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=119.1
Q ss_pred cCCeeEEEEcCCc-----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 135 WGYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~-----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
+.+++++++|+.. .+|+++||.+ +|++++|+|+||||||||+++|+|+. +|++|+|+++|.+
T Consensus 22 l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~------------~p~~G~I~i~g~~ 89 (320)
T PRK13631 22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI------------KSKYGTIQVGDIY 89 (320)
T ss_pred EEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEECCEE
Confidence 4468899999642 5999999999 89999999999999999999999999 9999999999987
Q ss_pred ccccc-----------cccCCCcceeeeEEEEeccCCCc-----ccCC-------ccc--------chHHHHhCChh-HH
Q 016339 209 VGEVS-----------TKSGRGKHTTRHVSLLPLSGGGY-----LADT-------PGF--------NQPSLLKVTKQ-SL 256 (391)
Q Consensus 209 v~~v~-----------~~~~~~~~ttr~i~~v~~~~~~~-----l~Dt-------pg~--------~~~~l~~~~~~-~l 256 (391)
++... ..........+.+++++++.... +.++ .+. ....+..+++. .+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 169 (320)
T PRK13631 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSY 169 (320)
T ss_pred cccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhH
Confidence 75320 00000011346688888863211 1111 011 11223345554 45
Q ss_pred hhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 257 ~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+..|. .|||||+||++||+|+ +.+|+++|+| |+.....+.++|.+++.+
T Consensus 170 ~~~~~~---~LSgGqkqRvaiAraL-~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~ 225 (320)
T PRK13631 170 LERSPF---GLSGGQKRRVAIAGIL-AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN 225 (320)
T ss_pred hcCCcc---cCCHHHHHHHHHHHHH-HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC
Confidence 666676 9999999999999999 9999999999 889999999999998654
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-22 Score=178.48 Aligned_cols=161 Identities=18% Similarity=0.249 Sum_probs=122.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
.++++++|++..+++++|+.+ +|++++|+||||||||||+.+++++. ++++|+|+++|.++...+.+
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~------------~~d~G~i~i~g~~~~~~~s~ 71 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL------------KKDSGEITIDGLELTSTPSK 71 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc------------cccCceEEEeeeecccCChH
Confidence 467889999999999999999 89999999999999999999999999 99999999999988654432
Q ss_pred cC--------CCcce----e-ee-EEE--EeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCccccccccccc
Q 016339 216 SG--------RGKHT----T-RH-VSL--LPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 216 ~~--------~~~~t----t-r~-i~~--v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
.- ...|. | +. ++| +|...|-.-.+........++.+.++.+.++|-. +|||||+||..+|+
T Consensus 72 ~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd---~LSGGQrQRAfIAM 148 (252)
T COG4604 72 ELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD---ELSGGQRQRAFIAM 148 (252)
T ss_pred HHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH---hcccchhhhhhhhe
Confidence 10 00011 1 11 111 1111111111112334556778888999999888 99999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.+ ..+.+.+++| |....-+++++|+.+..+...
T Consensus 149 Vl-aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~K 187 (252)
T COG4604 149 VL-AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGK 187 (252)
T ss_pred ee-eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCC
Confidence 99 9999999999 778888899999988776554
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-22 Score=185.17 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=116.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|++ +|++|+|.++|..+...
T Consensus 12 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~i~~~- 78 (214)
T PRK13543 12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL------------HVESGQIQIDGKTATRG- 78 (214)
T ss_pred EEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC------------CCCCeeEEECCEEccch-
Confidence 34578899998888999999999 89999999999999999999999999 99999999999766421
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc-----chHHHHhCChhHHhhhchhHHhhcCccccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF-----NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~-----~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
. ..+.++++++....+ +.++. +. ....+..+++.+..+..+. .||+||+||++|
T Consensus 79 --~-----~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~l 148 (214)
T PRK13543 79 --D-----RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVR---QLSAGQKKRLAL 148 (214)
T ss_pred --h-----hhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChh---hCCHHHHHHHHH
Confidence 0 123466666542211 11110 11 1123344565555666666 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+++ +.+|+++|+| |+.....+.+++.++.++
T Consensus 149 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (214)
T PRK13543 149 ARLW-LSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186 (214)
T ss_pred HHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 9999 9999999999 889999999999887643
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-21 Score=188.10 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=114.8
Q ss_pred CCeeEEEEcCC---------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec
Q 016339 136 GYEPLFCSVES---------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (391)
Q Consensus 136 g~~~v~~s~~~---------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~ 205 (391)
.+++++++|+. ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~ 73 (267)
T PRK15112 6 EVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI------------EPTSGELLID 73 (267)
T ss_pred EEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC------------CCCCCEEEEC
Confidence 35788888962 36899999999 89999999999999999999999999 9999999999
Q ss_pred CccccccccccCCCcceeeeEEEEeccCCCcccC--------------Cccc--------chHHHHhCCh-hHHhhhchh
Q 016339 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD--------------TPGF--------NQPSLLKVTK-QSLAQTFPE 262 (391)
Q Consensus 206 g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~D--------------tpg~--------~~~~l~~~~~-~~l~~~~p~ 262 (391)
|.++...... ...+.++++++....++.. ..+. ....+..+++ ....+..+.
T Consensus 74 g~~~~~~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 148 (267)
T PRK15112 74 DHPLHFGDYS-----YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPH 148 (267)
T ss_pred CEECCCCchh-----hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCch
Confidence 9876421110 1223567777653210000 0011 1122334555 344555566
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 149 ---~LS~G~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (267)
T PRK15112 149 ---MLAPGQKQRLGLARAL-ILRPKVIIADEALASLDMSMRSQLINLMLELQEK 198 (267)
T ss_pred ---hcCHHHHHHHHHHHHH-HhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 9999999999 889999999999998764
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-22 Score=195.11 Aligned_cols=158 Identities=21% Similarity=0.220 Sum_probs=117.3
Q ss_pred CCeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+++++++|++ ..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~ 71 (287)
T PRK13641 4 KFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL------------KPSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEC
Confidence 35788999974 35999999999 99999999999999999999999999 99999999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCC--C---cccCCc-------cc--------chHHHHhCChh-HHhhhchhHHhhcC
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGG--G---YLADTP-------GF--------NQPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~--~---~l~Dtp-------g~--------~~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
........ .......++++++... . .+.++- +. ....+..+++. .+.+..+. .||
T Consensus 72 ~~~~~~~~-~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---~LS 147 (287)
T PRK13641 72 TPETGNKN-LKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPF---ELS 147 (287)
T ss_pred ccccccch-HHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcc---cCC
Confidence 43210000 0012245677776531 1 111110 10 12224445664 46666677 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 148 gGq~qrl~laral-~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~ 194 (287)
T PRK13641 148 GGQMRRVAIAGVM-AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA 194 (287)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999 9999999999 889999999999998643
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=188.06 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=116.6
Q ss_pred CCeeEEEEcC---------CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec
Q 016339 136 GYEPLFCSVE---------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (391)
Q Consensus 136 g~~~v~~s~~---------~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~ 205 (391)
.+++++++|+ +..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++
T Consensus 4 ~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~ 71 (265)
T TIGR02769 4 EVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE------------KPAQGTVSFR 71 (265)
T ss_pred EEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEEC
Confidence 3578888885 356999999999 99999999999999999999999999 9999999999
Q ss_pred CccccccccccCCCcceeeeEEEEeccCC--C----cccCC--------ccc--------chHHHHhCChh-HHhhhchh
Q 016339 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGG--G----YLADT--------PGF--------NQPSLLKVTKQ-SLAQTFPE 262 (391)
Q Consensus 206 g~~v~~v~~~~~~~~~ttr~i~~v~~~~~--~----~l~Dt--------pg~--------~~~~l~~~~~~-~l~~~~p~ 262 (391)
|.++........ ....+.++++++... . .+.++ .++ ....+..+++. .+.+..+.
T Consensus 72 g~~i~~~~~~~~--~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 149 (265)
T TIGR02769 72 GQDLYQLDRKQR--RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPR 149 (265)
T ss_pred CEEccccCHHHH--HHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChh
Confidence 987654322110 002245777777531 1 11110 011 11223345553 45566666
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 150 ---~LSgGe~qrv~laral-~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~ 199 (265)
T TIGR02769 150 ---QLSGGQLQRINIARAL-AVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199 (265)
T ss_pred ---hCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 9999999999 888999999999998764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=188.59 Aligned_cols=155 Identities=15% Similarity=0.249 Sum_probs=117.2
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++..
T Consensus 8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~ 75 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE------------KVKSGEIFYNNQAITD 75 (269)
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCc
Confidence 346788999975 35899999999 99999999999999999999999999 9999999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCC-Cc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG-GY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~-~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.... ...+.+++++++.. .+ +.++ .+. ....+..+++.+..+..+. .||+||
T Consensus 76 ~~~~-----~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~ 147 (269)
T PRK13648 76 DNFE-----KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPN---ALSGGQ 147 (269)
T ss_pred CCHH-----HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcc---cCCHHH
Confidence 2211 12345677776532 11 1110 011 1122334555555666666 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.+++.++..+
T Consensus 148 ~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 191 (269)
T PRK13648 148 KQRVAIAGVL-ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE 191 (269)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 889999999999998654
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-21 Score=193.77 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=116.8
Q ss_pred eEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccC
Q 016339 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~ 217 (391)
+++++|++... ++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++........
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~------------~p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT------------RPQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccccccc
Confidence 67788887543 899999 89999999999999999999999999 9999999999987643211000
Q ss_pred CCcceeeeEEEEeccCCCc----ccCCcc---------cchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC
Q 016339 218 RGKHTTRHVSLLPLSGGGY----LADTPG---------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 218 ~~~~ttr~i~~v~~~~~~~----l~Dtpg---------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~ 284 (391)
.+...+.+++++++...+ +.++-. .....+..+++.++.+..|. .|||||+||++||||+ +.
T Consensus 71 -~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LSgGq~qRvalaraL-~~ 145 (352)
T PRK11144 71 -LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG---SLSGGEKQRVAIGRAL-LT 145 (352)
T ss_pred -cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcc---cCCHHHHHHHHHHHHH-Hc
Confidence 011235678888774322 111111 11233556677777788888 9999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 285 EPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+++|+| |+.....+.++|.++.++
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~ 177 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLARE 177 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999 888999999999998765
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-22 Score=192.82 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=119.7
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++++++|+ +..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..-.
T Consensus 7 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~------------~p~~G~i~i~g~~~~~~~ 74 (283)
T PRK13636 7 KVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL------------KPSSGRILFDGKPIDYSR 74 (283)
T ss_pred EEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCccEEEECCEECCCCc
Confidence 4578999996 567999999999 89999999999999999999999999 999999999998763211
Q ss_pred cccCCCcceeeeEEEEeccCCCc-----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY-----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~-----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
... ......+++++++.... +.++ .++ ....+..+++..+.+..+. .|||||+|
T Consensus 75 ~~~---~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LS~G~~q 148 (283)
T PRK13636 75 KGL---MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTH---CLSFGQKK 148 (283)
T ss_pred chH---HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcc---cCCHHHHH
Confidence 100 01234577777763211 1111 011 1222445666666777777 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 149 rl~laraL-~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~ 190 (283)
T PRK13636 149 RVAIAGVL-VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE 190 (283)
T ss_pred HHHHHHHH-HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999999 899999999999998764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-21 Score=186.31 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=115.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc-----c
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR-----V 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~-----v 209 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.+ +
T Consensus 8 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 8 SVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL------------APDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred EEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCcccccccc
Confidence 4578899998888999999999 99999999999999999999999999 9999999999986 4
Q ss_pred cccccccCCCcceeeeEEEEeccCCCcc------cCC------------cc----cchHHHHhCChh-HHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYL------ADT------------PG----FNQPSLLKVTKQ-SLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~l------~Dt------------pg----~~~~~l~~~~~~-~l~~~~p~~~~~ 266 (391)
...+... ........++++++.....+ .++ .+ .....+..+++. ...+..+. .
T Consensus 76 ~~~~~~~-~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~ 151 (258)
T PRK11701 76 YALSEAE-RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPT---T 151 (258)
T ss_pred ccCCHHH-HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCc---c
Confidence 3222110 00001245777777632100 000 00 001123344443 24455566 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||+||++||+|+ +.+|+++|+| |+.....+.+++.++..+
T Consensus 152 LS~Gq~qrl~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 200 (258)
T PRK11701 152 FSGGMQQRLQIARNL-VTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE 200 (258)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999 888999999999988654
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-21 Score=181.36 Aligned_cols=151 Identities=16% Similarity=0.232 Sum_probs=118.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|+...++++++|.+ +|++++|+||||||||||+++|+|+. +|+.|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~------------~~~~G~i~~~g~~~~~~~~- 69 (232)
T cd03300 3 LENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE------------TPTSGEILLDGKDITNLPP- 69 (232)
T ss_pred EEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcCcCCh-
Confidence 578899998888999999999 89999999999999999999999999 9999999999987654322
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
....+++++++...+ +.++- +. ....+..+++.+..+..|. .||+||+||++
T Consensus 70 ------~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~lS~G~~qrl~ 140 (232)
T cd03300 70 ------HKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPS---QLSGGQQQRVA 140 (232)
T ss_pred ------hhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHHHH
Confidence 124566666653211 11110 00 1122334566666677776 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 141 laral-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~ 179 (232)
T cd03300 141 IARAL-VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE 179 (232)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999 889999999999998764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-21 Score=185.18 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=114.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc-----c
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR-----V 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~-----v 209 (391)
.+++++++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.+ +
T Consensus 5 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 5 QVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL------------APDHGTATYIMRSGAELEL 72 (253)
T ss_pred EEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEEeccccccccc
Confidence 4578899998878999999999 99999999999999999999999999 8999999999865 3
Q ss_pred cccccccCCCcceeeeEEEEeccCCCcc------cCCc-------c---------cchHHHHhCChh-HHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYL------ADTP-------G---------FNQPSLLKVTKQ-SLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~l------~Dtp-------g---------~~~~~l~~~~~~-~l~~~~p~~~~~ 266 (391)
...+... ..+...+.++++++.....+ .++- . .....+..+++. ...+..+. .
T Consensus 73 ~~~~~~~-~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~ 148 (253)
T TIGR02323 73 YQLSEAE-RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPR---A 148 (253)
T ss_pred ccCCHHH-HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCch---h
Confidence 3222110 00001234667666532100 0000 0 001123344443 34555666 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||+||++||+|+ +.+|+++|+| |+.....+.+++.++..+
T Consensus 149 LSgG~~qrv~laral-~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~ 197 (253)
T TIGR02323 149 FSGGMQQRLQIARNL-VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD 197 (253)
T ss_pred cCHHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999 889999999999987654
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-21 Score=187.36 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=119.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.+.|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++..++
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~ 73 (257)
T PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE------------KPSEGSIVVNGQTINLVR 73 (257)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEccccc
Confidence 34578999998888999999999 99999999999999999999999999 899999999998764322
Q ss_pred cccC--------CCcceeeeEEEEeccCCCc----ccCCccc----------------chHHHHhCChhHHh-hhchhHH
Q 016339 214 TKSG--------RGKHTTRHVSLLPLSGGGY----LADTPGF----------------NQPSLLKVTKQSLA-QTFPEIK 264 (391)
Q Consensus 214 ~~~~--------~~~~ttr~i~~v~~~~~~~----l~Dtpg~----------------~~~~l~~~~~~~l~-~~~p~~~ 264 (391)
...+ ......+.++++++....+ +.++..+ ....+..+++.... +..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-- 151 (257)
T PRK10619 74 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPV-- 151 (257)
T ss_pred ccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcc--
Confidence 1100 0011235678888764321 1222110 11123344444432 45555
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 152 -~LS~G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 201 (257)
T PRK10619 152 -HLSGGQQQRVSIARAL-AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE 201 (257)
T ss_pred -cCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence 8999999999999999 9999999999 889999999999998754
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-21 Score=182.44 Aligned_cols=156 Identities=20% Similarity=0.269 Sum_probs=112.5
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.++++.++|++ ..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~ 70 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY------------DPQKGQILIDGIDIRDI 70 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECCEeHHHc
Confidence 346788999975 46999999999 89999999999999999999999999 89999999999776543
Q ss_pred ccccCCCcceeeeEEEEeccCCC---cccCC-----cccc----hHHHHhCChhHHhhhch--------hHHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFN----QPSLLKVTKQSLAQTFP--------EIKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~----~~~l~~~~~~~l~~~~p--------~~~~~LSgGq~ 272 (391)
+... ..+.++++++.... .+.++ +... ...+..+++..+.+.+| .....|||||+
T Consensus 71 ~~~~-----~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 145 (229)
T cd03254 71 SRKS-----LRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGER 145 (229)
T ss_pred CHHH-----HhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHH
Confidence 2211 23446676665321 11111 0001 11122233444443332 01138999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||+++ +.+|+++|+| |+.....+.+++.++.
T Consensus 146 ~rv~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (229)
T cd03254 146 QLLAIARAM-LRDPKILILDEATSNIDTETEKLIQEALEKLM 186 (229)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 999999999 9999999999 8889999999998874
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-21 Score=211.93 Aligned_cols=156 Identities=17% Similarity=0.257 Sum_probs=123.3
Q ss_pred hcCCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 134 TWGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 134 ~~g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+.+++++++|. +..+|+++||++ +|++++|+|+||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~------------~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE------------TPESGSVFYDGQDLA 518 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEEcC
Confidence 356789999995 356999999999 89999999999999999999999999 999999999999988
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCCcc----cch----HHHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPG----FNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dtpg----~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.++... .++++++++|+. .+.+.|+-. ..+ ..+...++.+.....|. ....|||||
T Consensus 519 ~~~~~~-----lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQ 593 (686)
T TIGR03797 519 GLDVQA-----VRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQ 593 (686)
T ss_pred cCCHHH-----HHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence 776542 457789999883 333433311 222 22444555555555553 123699999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
+||+++|||+ +.+|+++|+| |+...+.+.+.+.++
T Consensus 594 rQRialARAl-l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~ 634 (686)
T TIGR03797 594 RQRLLIARAL-VRKPRILLFDEATSALDNRTQAIVSESLERL 634 (686)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 888888888888775
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-21 Score=193.77 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=116.4
Q ss_pred eEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccC
Q 016339 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~ 217 (391)
+++++|++.. + +++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++........
T Consensus 4 ~l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~------------~p~~G~I~~~g~~i~~~~~~~~ 69 (354)
T TIGR02142 4 RFSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT------------RPDEGEIVLNGRTLFDSRKGIF 69 (354)
T ss_pred EEEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECccCccccc
Confidence 5778887755 4 899999 89999999999999999999999999 9999999999987643211000
Q ss_pred CCcceeeeEEEEeccCCCc----ccCCcc-------------cchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 218 RGKHTTRHVSLLPLSGGGY----LADTPG-------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 218 ~~~~ttr~i~~v~~~~~~~----l~Dtpg-------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
.....+.++++++....+ +.++-. .....+..+++..+.+..|. .|||||+||++||+|
T Consensus 70 -~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LSgGqkqRvalAra 145 (354)
T TIGR02142 70 -LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPG---RLSGGEKQRVAIGRA 145 (354)
T ss_pred -cchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChh---hCCHHHHHHHHHHHH
Confidence 011235677887764322 111110 01223445667777788887 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 146 L-~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~ 180 (354)
T TIGR02142 146 L-LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE 180 (354)
T ss_pred H-HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 9 9999999999 889999999999998765
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-22 Score=186.39 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=116.7
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~i~g~~~~~~~~- 69 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE------------QPDSGRIRLNGQDATRVHA- 69 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcCcCCh-
Confidence 578889998888999999999 99999999999999999999999999 8999999999977643221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++. +. ....+..+++....+..+. .||+||+||++
T Consensus 70 ------~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~lS~G~~qrl~ 140 (237)
T TIGR00968 70 ------RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN---QLSGGQRQRVA 140 (237)
T ss_pred ------hhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChh---hCCHHHHHHHH
Confidence 234566666652211 11110 00 1122334455555566666 89999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +..|+++++| |+...+.+.++|.++.+.
T Consensus 141 laral-~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~ 179 (237)
T TIGR00968 141 LARAL-AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE 179 (237)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-21 Score=194.16 Aligned_cols=158 Identities=20% Similarity=0.205 Sum_probs=118.1
Q ss_pred CCeeEEEEcC----CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC---CCcceecCc
Q 016339 136 GYEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQ 207 (391)
Q Consensus 136 g~~~v~~s~~----~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~---~G~I~~~g~ 207 (391)
.++++.++|. ...++++|||++ +|++++|+|+||||||||+++|+|+. .|. +|+|+|+|.
T Consensus 14 ~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~------------~p~~~~sG~I~~~G~ 81 (330)
T PRK09473 14 DVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL------------AANGRIGGSATFNGR 81 (330)
T ss_pred EEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC------------CCCCCCCeEEEECCE
Confidence 4578888884 246899999999 99999999999999999999999999 664 999999999
Q ss_pred cccccccccCCCcceeeeEEEEeccCCCc------ccC----C----cccc--------hHHHHhCChh---HHhhhchh
Q 016339 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGY------LAD----T----PGFN--------QPSLLKVTKQ---SLAQTFPE 262 (391)
Q Consensus 208 ~v~~v~~~~~~~~~ttr~i~~v~~~~~~~------l~D----t----pg~~--------~~~l~~~~~~---~l~~~~p~ 262 (391)
++...+.... .+...+.+++++|+.... +.+ . .+.. ...+..+++. ...+.+|.
T Consensus 82 ~i~~~~~~~~-~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~ 160 (330)
T PRK09473 82 EILNLPEKEL-NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPH 160 (330)
T ss_pred ECCcCCHHHH-HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc
Confidence 8765543210 001124688998874211 100 0 0111 1123334443 23456787
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|||||+||++||+|+ +.+|+++|+| |+.....++++|.+++++
T Consensus 161 ---~LSgG~~QRv~IArAL-~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (330)
T PRK09473 161 ---EFSGGMRQRVMIAMAL-LCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210 (330)
T ss_pred ---cCCHHHHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999 889999999999999775
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-22 Score=208.60 Aligned_cols=156 Identities=20% Similarity=0.305 Sum_probs=124.4
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|+ +..+++++||.+ +|+++|||||||||||||+|+|++++ +|++|+|.+||.++..+
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~------------~~~~G~I~idg~dI~~i 396 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY------------DPTSGEILIDGIDIRDI 396 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCCeEEECCEehhhc
Confidence 56899999999 678999999999 99999999999999999999999999 99999999999999888
Q ss_pred ccccCCCcceeeeEEEEeccC---CCcccCC-----cccchHH----HHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... .++.+++++|+. .+.+.++ |...++. +......+....+|+ ....||||||
T Consensus 397 ~~~~-----lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 397 SLDS-----LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred CHHH-----HHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 7654 567788888873 3334433 2222222 223334444334443 2247999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |++....+++.+.++.
T Consensus 472 QrlaiARal-l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~ 512 (567)
T COG1132 472 QRLAIARAL-LRNPPILILDEATSALDTETEALIQDALKKLL 512 (567)
T ss_pred HHHHHHHHH-hcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence 999999999 9999999999 8889899998888665
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-21 Score=188.33 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=116.0
Q ss_pred cCCeeEEEEcCCc-----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 135 WGYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~-----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
+.+++++++|++. .+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.+
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~ 74 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI------------ISETGQTIVGDYA 74 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEE
Confidence 4467899999764 4899999999 89999999999999999999999999 9999999999987
Q ss_pred ccccccccCCCcceeeeEEEEeccCCC-----cccCC-------cccc--------hHHHHhCCh-hHHhhhchhHHhhc
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADT-------PGFN--------QPSLLKVTK-QSLAQTFPEIKEML 267 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~-----~l~Dt-------pg~~--------~~~l~~~~~-~~l~~~~p~~~~~L 267 (391)
+..............+.++++++.... .+.++ .+.. ...+..+++ .++.+..+. .|
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~---~L 151 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPF---EL 151 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChh---hC
Confidence 642100000000123457777775311 11111 0111 112333444 245555566 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 152 S~Gq~qrv~laral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~ 199 (289)
T PRK13645 152 SGGQKRRVALAGII-AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE 199 (289)
T ss_pred CHHHHHHHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999 889999999999998754
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-21 Score=188.74 Aligned_cols=156 Identities=15% Similarity=0.208 Sum_probs=119.1
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.++++.++|+ ...+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 3 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~~~ 70 (275)
T PRK13639 3 ETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL------------KPTSGEVLIKGEPIKYDK 70 (275)
T ss_pred EEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCEECcccc
Confidence 3578899996 456999999999 99999999999999999999999999 899999999998764211
Q ss_pred cccCCCcceeeeEEEEeccCCC-----cccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG-----YLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~-----~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
.. .......+++++++... .+.++- +. ....+..+++.++.+..+. .|||||+|
T Consensus 71 ~~---~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~LS~Gq~q 144 (275)
T PRK13639 71 KS---LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPH---HLSGGQKK 144 (275)
T ss_pred ch---HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChh---hCCHHHHH
Confidence 10 01123567777776321 111110 11 1123445566666777777 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 145 rv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (275)
T PRK13639 145 RVAIAGIL-AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE 186 (275)
T ss_pred HHHHHHHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 99999999 9999999999 889999999999998754
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-21 Score=187.22 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=114.3
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.++++.++|+ +..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...
T Consensus 7 l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~ 74 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV------------RLASGKISILGQPTRQA 74 (272)
T ss_pred EEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEhHHh
Confidence 45688999995 567999999999 99999999999999999999999999 99999999998764210
Q ss_pred ccccCCCcceeeeEEEEeccCCC------cccCC--------------c-----ccchHHHHhCChhHHhhhchhHHhhc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGG------YLADT--------------P-----GFNQPSLLKVTKQSLAQTFPEIKEML 267 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~------~l~Dt--------------p-----g~~~~~l~~~~~~~l~~~~p~~~~~L 267 (391)
. ....++++++.... .+.++ + ......+..+++.+..+..+. .|
T Consensus 75 ~--------~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~L 143 (272)
T PRK15056 75 L--------QKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG---EL 143 (272)
T ss_pred h--------ccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc---cC
Confidence 0 01123444333110 00000 0 011223455666666677777 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.++|.+++.+
T Consensus 144 SgG~~qrv~laraL-~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~ 191 (272)
T PRK15056 144 SGGQKKRVFLARAI-AQQGQVILLDEPFTGVDVKTEARIISLLRELRDE 191 (272)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999 9999999999 889999999999998653
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-21 Score=183.73 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=114.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+..+.. ..|++|+|.++|.++...+
T Consensus 4 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~-------~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP-------EARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred EEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC-------CCCCceEEEECCEECCcCC
Confidence 34678899998888999999999 999999999999999999999999982100 0147999999998765432
Q ss_pred cccCCCcceeeeEEEEeccCCC----cccCCcc-------c----------chHHHHhCChh----HHhhhchhHHhhcC
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPG-------F----------NQPSLLKVTKQ----SLAQTFPEIKEMLK 268 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~----~l~Dtpg-------~----------~~~~l~~~~~~----~l~~~~p~~~~~LS 268 (391)
... ....++++++.... .+.++-. . ....+..+++. ...+..+. .||
T Consensus 77 ~~~-----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS 148 (250)
T PRK14247 77 VIE-----LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAG---KLS 148 (250)
T ss_pred HHH-----HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcc---cCC
Confidence 211 23467777776321 1111110 0 01112223331 23344555 899
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 149 gG~~qrv~laral-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14247 149 GGQQQRLCIARAL-AFQPEVLLADEPTANLDPENTAKIESLFLELKK 194 (250)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999 88999999999998853
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-21 Score=175.24 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=105.9
Q ss_pred CeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
++++.++|++ ..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++....
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~~ 70 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL------------RPTSGRVRLDGADISQWD 70 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc------------CCCCCeEEECCEEcccCC
Confidence 5788889975 45899999999 89999999999999999999999999 999999999998775433
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG- 292 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD- 292 (391)
... ..+.+++++++.. +. +. ...+.+ |||||+||++||+|+ +.+|+++|+|
T Consensus 71 ~~~-----~~~~i~~~~q~~~--~~--~~---tv~~~l---------------LS~G~~qrv~la~al-~~~p~~lllDE 122 (173)
T cd03246 71 PNE-----LGDHVGYLPQDDE--LF--SG---SIAENI---------------LSGGQRQRLGLARAL-YGNPRILVLDE 122 (173)
T ss_pred HHH-----HHhheEEECCCCc--cc--cC---cHHHHC---------------cCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 211 2345777776532 11 11 011111 999999999999999 9999999999
Q ss_pred -----CHHHHHHHHHHHHHHHH
Q 016339 293 -----DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 293 -----D~~~~~~~~~ll~el~~ 309 (391)
|+.....+.+++.++++
T Consensus 123 Pt~~LD~~~~~~l~~~l~~~~~ 144 (173)
T cd03246 123 PNSHLDVEGERALNQAIAALKA 144 (173)
T ss_pred CccccCHHHHHHHHHHHHHHHh
Confidence 88899999999988864
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-21 Score=175.27 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=96.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
|+++.++|++..+++++ +.+ +|++++|+||||||||||+|+|+|+. +|++|+|.++|..++
T Consensus 3 ~~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~----- 64 (177)
T cd03222 3 YPDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL------------IPNGDNDEWDGITPV----- 64 (177)
T ss_pred CCCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCCcEEEECCEEEE-----
Confidence 68999999998899884 788 89999999999999999999999999 999999999875432
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
++++... |||||+||+++|+|+ +.+|+++++|
T Consensus 65 ------------~~~q~~~--------------------------------LSgGq~qrv~laral-~~~p~lllLDEPt 99 (177)
T cd03222 65 ------------YKPQYID--------------------------------LSGGELQRVAIAAAL-LRNATFYLFDEPS 99 (177)
T ss_pred ------------EEcccCC--------------------------------CCHHHHHHHHHHHHH-hcCCCEEEEECCc
Confidence 2222110 999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.+++.++.++
T Consensus 100 s~LD~~~~~~l~~~l~~~~~~ 120 (177)
T cd03222 100 AYLDIEQRLNAARAIRRLSEE 120 (177)
T ss_pred ccCCHHHHHHHHHHHHHHHHc
Confidence 888999999999988654
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-21 Score=187.22 Aligned_cols=154 Identities=16% Similarity=0.226 Sum_probs=118.8
Q ss_pred CCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 136 GYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 136 g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
.++++.++|++. .++++++|++ +|++++|+|+||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 6 ~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~i~~ 73 (277)
T PRK13642 6 EVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF------------EEFEGKVKIDGELLTA 73 (277)
T ss_pred EEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCCEEEECCEECCc
Confidence 457889999742 4899999999 99999999999999999999999999 9999999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCC-----CcccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~-----~~l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.+.. ...+.+++++++.. ..+.++ .+.. ...+..+++.++.+..|. .|||||
T Consensus 74 ~~~~-----~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~ 145 (277)
T PRK13642 74 ENVW-----NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPA---RLSGGQ 145 (277)
T ss_pred CCHH-----HHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc---cCCHHH
Confidence 2211 12356777777631 111111 0111 122344566666777777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 146 ~qrv~lAraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (277)
T PRK13642 146 KQRVAVAGII-ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK 189 (277)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 889999999999998764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-21 Score=177.62 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=113.4
Q ss_pred eEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccC
Q 016339 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~ 217 (391)
+++++|++..+ +++|++ + ++++|+||||||||||+++|+|+. +|++|+|.++|.++........
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~~~ 69 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE------------KPDGGTIVLNGTVLFDSRKKIN 69 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEecccccchhh
Confidence 68899988765 999999 8 999999999999999999999999 9999999999987643211000
Q ss_pred CCcceeeeEEEEeccCCCc----ccCCcc-------------cchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 218 RGKHTTRHVSLLPLSGGGY----LADTPG-------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 218 ~~~~ttr~i~~v~~~~~~~----l~Dtpg-------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
.....+.++++++....+ +.++-. .....+..+++....+..+. .|||||+||++||+|
T Consensus 70 -~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~la~a 145 (214)
T cd03297 70 -LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPA---QLSGGEKQRVALARA 145 (214)
T ss_pred -hhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcc---cCCHHHHHHHHHHHH
Confidence 011234677777763321 111100 01122344555555666666 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 146 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (214)
T cd03297 146 L-AAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180 (214)
T ss_pred H-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 9 9999999999 889999999999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-21 Score=187.25 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=114.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC--------CCcceecC
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI--------LGSKWFED 206 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~--------~G~I~~~g 206 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|+ +|+|.++|
T Consensus 3 ~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~------------~p~~~~~~~~~~G~i~~~g 70 (272)
T PRK13547 3 TADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL------------TGGGAPRGARVTGDVTLNG 70 (272)
T ss_pred EEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCcccccccCCceEEEECC
Confidence 3578999998888999999999 89999999999999999999999998 777 89999999
Q ss_pred ccccccccccCCCcceeeeEEEEeccCCC----cccCC------c-------------ccchHHHHhCChhHHhhhchhH
Q 016339 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGG----YLADT------P-------------GFNQPSLLKVTKQSLAQTFPEI 263 (391)
Q Consensus 207 ~~v~~v~~~~~~~~~ttr~i~~v~~~~~~----~l~Dt------p-------------g~~~~~l~~~~~~~l~~~~p~~ 263 (391)
.++....... ..+.++++++.... .+.++ + ......+..+++..+.+..+.
T Consensus 71 ~~~~~~~~~~-----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 144 (272)
T PRK13547 71 EPLAAIDAPR-----LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVT- 144 (272)
T ss_pred EEcccCCHHH-----HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcc-
Confidence 7664322110 11223444443110 11010 0 011223445566666666676
Q ss_pred HhhcCccccccccccccccc---------CCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 264 KEMLKANEPAKCSFNNCLHL---------GEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 264 ~~~LSgGq~qr~~iaralh~---------~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+++ + .+|+++|+| |+.....+.+++.++.++
T Consensus 145 --~LSgG~~qrv~laral-~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 203 (272)
T PRK13547 145 --TLSGGELARVQFARVL-AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD 203 (272)
T ss_pred --cCCHHHHHHHHHHHHH-hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 7 599999999 889999999999998764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-21 Score=202.73 Aligned_cols=154 Identities=18% Similarity=0.137 Sum_probs=117.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~------------~p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 5 QISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL------------PLLSGERQSQFSHITRLSF 72 (490)
T ss_pred EEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCceEEECCcccccCCH
Confidence 4578999998878999999999 99999999999999999999999999 8999999998765532211
Q ss_pred ccCCCcceeeeEEEEeccCC------------CcccCC-------cccchHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGG------------GYLADT-------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~------------~~l~Dt-------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.. ..+.++++++... ..+.+. .......+..+++.++.+..+. .|||||+||+
T Consensus 73 ~~-----~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrv 144 (490)
T PRK10938 73 EQ-----LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFK---YLSTGETRKT 144 (490)
T ss_pred HH-----HHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcc---cCCHHHHHHH
Confidence 10 1122344443311 111111 0112234556677777778888 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 145 ~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 184 (490)
T PRK10938 145 LLCQAL-MSEPDLLILDEPFDGLDVASRQQLAELLASLHQS 184 (490)
T ss_pred HHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 999999 9999999999 899999999999998654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-21 Score=202.91 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=119.8
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.++|.++...+
T Consensus 12 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV------------PPDSGTLEIGGNPCARLT 79 (510)
T ss_pred EEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCCCC
Confidence 34678999999888999999999 89999999999999999999999999 999999999997764332
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-----------ccchHHHHhCChhHHhhhchhHHhhcCcccccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-----------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-----------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
... .....++++++....+ +.++- ......+..+++....+..+. .|||||+||++||
T Consensus 80 ~~~----~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrv~la 152 (510)
T PRK15439 80 PAK----AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAG---SLEVADRQIVEIL 152 (510)
T ss_pred HHH----HHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChh---hCCHHHHHHHHHH
Confidence 110 0113467777763221 11110 011123445566555666677 9999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 153 ~aL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 189 (510)
T PRK15439 153 RGL-MRDSRILILDEPTASLTPAETERLFSRIRELLAQ 189 (510)
T ss_pred HHH-HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
Confidence 999 9999999999 899999999999998653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-21 Score=203.27 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=117.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+.
T Consensus 7 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 7 SMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH------------EPTKGTITINNINYNKLDH 74 (510)
T ss_pred EEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc------------CCCccEEEECCEECCCCCH
Confidence 4578999998888999999999 89999999999999999999999999 8999999999987644322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-----------c-----------cchHHHHhCChhHHhhhchhHHhhcC
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-----------G-----------FNQPSLLKVTKQSLAQTFPEIKEMLK 268 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-----------g-----------~~~~~l~~~~~~~l~~~~p~~~~~LS 268 (391)
... ..+.++++++....+ +.++- + .....+..+++....+..+. .||
T Consensus 75 ~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS 147 (510)
T PRK09700 75 KLA----AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA---NLS 147 (510)
T ss_pred HHH----HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh---hCC
Confidence 100 113466666652211 11110 0 01112334555555566677 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.+++++
T Consensus 148 gG~~qrv~ia~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 194 (510)
T PRK09700 148 ISHKQMLEIAKTL-MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE 194 (510)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999 9999999999 899999999999998654
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-22 Score=183.81 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=110.4
Q ss_pred CCeeEEEEcCC-------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-
Q 016339 136 GYEPLFCSVES-------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED- 206 (391)
Q Consensus 136 g~~~v~~s~~~-------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g- 206 (391)
.++++.++|+. ..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.+++
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~~~ 70 (224)
T TIGR02324 3 EVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY------------LPDSGRILVRHE 70 (224)
T ss_pred EEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEEecC
Confidence 35788888852 36899999999 99999999999999999999999999 89999999973
Q ss_pred -c--cccccccccCCCcceeeeEEEEeccCCCcc----cCC-------cccc--------hHHHHhCChhH-HhhhchhH
Q 016339 207 -Q--RVGEVSTKSGRGKHTTRHVSLLPLSGGGYL----ADT-------PGFN--------QPSLLKVTKQS-LAQTFPEI 263 (391)
Q Consensus 207 -~--~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l----~Dt-------pg~~--------~~~l~~~~~~~-l~~~~p~~ 263 (391)
. ++...+... ......+.++++++....+. .++ .+.. ...+..+++.. +.+..+.
T Consensus 71 g~~~~~~~~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 148 (224)
T TIGR02324 71 GAWVDLAQASPRE-VLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPA- 148 (224)
T ss_pred CCccchhhcCHHH-HHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcc-
Confidence 2 332211110 00001234667776532110 000 0111 11233344433 2344555
Q ss_pred HhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 264 ~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.+++.+++.+
T Consensus 149 --~LS~G~~qrl~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (224)
T TIGR02324 149 --TFSGGEQQRVNIARGF-IADYPILLLDEPTASLDAANRQVVVELIAEAKAR 198 (224)
T ss_pred --cCCHHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 8999999999999999 9999999999 889999999999988643
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-21 Score=196.60 Aligned_cols=153 Identities=18% Similarity=0.284 Sum_probs=123.5
Q ss_pred cCCeeEEEEcCCcc-chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~~~-~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.|+++.++|+.+. +|+++||+| +|+.+||+|+|||||||+||+|.++. + .+|+|+++|+++..+
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~------------d-~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF------------D-YSGSILIDGQDIKEV 418 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh------------c-cCCcEEECCeeHhhh
Confidence 55789999999887 999999999 99999999999999999999999998 7 999999999999888
Q ss_pred ccccCCCcceeeeEEEEeccCCCc---c-----cCCcccchHH----HHhCChhHHhhhchhH--------HhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY---L-----ADTPGFNQPS----LLKVTKQSLAQTFPEI--------KEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~---l-----~Dtpg~~~~~----l~~~~~~~l~~~~p~~--------~~~LSgGq~ 272 (391)
.... +++.++++||+...+ + ..+|...... ....++.+....+|+- ...|||||+
T Consensus 419 ~~~S-----lR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGek 493 (591)
T KOG0057|consen 419 SLES-----LRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEK 493 (591)
T ss_pred ChHH-----hhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchH
Confidence 7654 667899999984322 1 2234433322 2344555555555442 237999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
||+++|||+ +.+|+++++| |.+....+++++..
T Consensus 494 QrvslaRa~-lKda~Il~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 494 QRVSLARAF-LKDAPILLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred HHHHHHHHH-hcCCCeEEecCcccccchhhHHHHHHHHHH
Confidence 999999999 9999999999 78888888888877
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-21 Score=183.13 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=113.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC----CCCcceecCccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP----ILGSKWFEDQRV 209 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p----~~G~I~~~g~~v 209 (391)
+.+++++++| +..+++++||.+ +|++++|+||||||||||+++|+|+. +| ++|+|+++|.++
T Consensus 5 l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 5 IELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL------------PAGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCcCCEEEECCeec
Confidence 3457888899 567999999999 99999999999999999999999998 77 999999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCCCccc--CC-----------ccc------chHHHHhCChhH---HhhhchhHHhhc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLA--DT-----------PGF------NQPSLLKVTKQS---LAQTFPEIKEML 267 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~l~--Dt-----------pg~------~~~~l~~~~~~~---l~~~~p~~~~~L 267 (391)
... . ...+.+++++++....+. .+ .+. ....+..+++.. +.+..+. .|
T Consensus 72 ~~~---~----~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~L 141 (254)
T PRK10418 72 APC---A----LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPF---EM 141 (254)
T ss_pred ccc---c----cccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCc---cc
Confidence 411 0 022457777776321110 00 010 011223334332 3345555 89
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 142 S~Gq~qrv~laral-~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~ 189 (254)
T PRK10418 142 SGGMLQRMMIALAL-LCEAPFIIADEPTTDLDVVAQARILDLLESIVQK 189 (254)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999 888999999999998654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-21 Score=202.33 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=117.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 6 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 6 QLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY------------TRDAGSILYLGKEVTFNGP 73 (501)
T ss_pred EEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCH
Confidence 4578899998888999999999 89999999999999999999999999 9999999999977643221
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc----------c---------cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP----------G---------FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp----------g---------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
... ..+.++++++....+ +.++- + .....+..+++.+..+..+. .|||||
T Consensus 74 ~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~ 146 (501)
T PRK10762 74 KSS----QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG---ELSIGE 146 (501)
T ss_pred HHH----HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh---hCCHHH
Confidence 100 123466666652211 11110 0 01122444555555666677 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.+++.+++..
T Consensus 147 ~qrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 190 (501)
T PRK10762 147 QQMVEIAKVL-SFESKVIIMDEPTDALTDTETESLFRVIRELKSQ 190 (501)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC
Confidence 9999999999 9999999999 889999999999998654
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-21 Score=176.35 Aligned_cols=134 Identities=20% Similarity=0.222 Sum_probs=106.4
Q ss_pred CeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+++++++|.+. .++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~- 69 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL------------KPQQGEITLDGVPVSDL- 69 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCCEEEECCEEHHHH-
Confidence 57788888765 6999999999 89999999999999999999999999 89999999999876543
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG- 292 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD- 292 (391)
.. ...+.++++++... +.. . ...+. .+. .||+||+||++||+|+ +.+|+++|+|
T Consensus 70 ~~-----~~~~~i~~~~q~~~--~~~--~---tv~~~---------i~~---~LS~G~~qrv~laral-~~~p~~lllDE 124 (178)
T cd03247 70 EK-----ALSSLISVLNQRPY--LFD--T---TLRNN---------LGR---RFSGGERQRLALARIL-LQDAPIVLLDE 124 (178)
T ss_pred HH-----HHHhhEEEEccCCe--eec--c---cHHHh---------hcc---cCCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 11 12345777776432 111 1 00111 145 8999999999999999 9999999999
Q ss_pred -----CHHHHHHHHHHHHHHH
Q 016339 293 -----DWERYQYYFQLLDEIR 308 (391)
Q Consensus 293 -----D~~~~~~~~~ll~el~ 308 (391)
|+.....+++++.++.
T Consensus 125 P~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 125 PTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 7889999999998874
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-21 Score=203.55 Aligned_cols=157 Identities=18% Similarity=0.279 Sum_probs=122.1
Q ss_pred hcCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 134 ~~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+.+++++++|.+ ..+++++|+++ +|++++|+||||||||||+|+|+|++ +|++|+|.++|.++.
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~------------~~~~G~I~~~g~~i~ 387 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV------------DPTEGSIAVNGVPLA 387 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEehh
Confidence 3567899999975 35999999999 99999999999999999999999999 999999999999887
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
.++... ..+++++++|+. .+.+.++ |...+ ..+...+..+....+|. ....||||
T Consensus 388 ~~~~~~-----lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 388 DADADS-----WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred hCCHHH-----HHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHH
Confidence 665432 456788888873 3333332 22222 22334555555555542 22479999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|+||+++|||+ +.+|+++++| |+...+.+.+.+.++.
T Consensus 463 q~qri~laRal-~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~ 505 (529)
T TIGR02857 463 QAQRLALARAF-LRDAPLLLLDEPTAHLDAETEALVTEALRALA 505 (529)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCcccccCHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 7888888888887764
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-21 Score=188.68 Aligned_cols=161 Identities=14% Similarity=0.215 Sum_probs=113.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+..+.. ..|++|+|.++|.++....
T Consensus 14 l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-------~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 14 ISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIE-------GCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred EEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC-------CCCCceEEEECCEEccccc
Confidence 45688999998888999999999 999999999999999999999999971000 0168999999997664211
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc-------hHHHHhCCh----hHHhhhchhHHhhcCcccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN-------QPSLLKVTK----QSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~-------~~~l~~~~~----~~l~~~~p~~~~~LSgGq~ 272 (391)
... ....+.++++++....+ +.++- ++. ...+..+++ ....+..+. .|||||+
T Consensus 87 ~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LS~G~~ 160 (269)
T PRK14259 87 VDP---VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGY---SLSGGQQ 160 (269)
T ss_pred CCH---HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcc---cCCHHHH
Confidence 100 01234577777653221 11110 110 011222222 223344455 8999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||++||+|+ +.+|+++|+| |+.....+.++|.+++.
T Consensus 161 qrl~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 202 (269)
T PRK14259 161 QRLCIARTI-AIEPEVILMDEPCSALDPISTLKIEETMHELKK 202 (269)
T ss_pred HHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 999999999 9999999999 88999999999998854
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-21 Score=174.03 Aligned_cols=132 Identities=20% Similarity=0.316 Sum_probs=104.7
Q ss_pred CeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
++++.++|++. .++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|..+...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~------------~~~~G~i~~~g~~~~~~~ 70 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY------------DPTSGEILIDGVDLRDLD 70 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCCEEEECCEEhhhcC
Confidence 57788899775 7999999999 99999999999999999999999999 899999999998765433
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG- 292 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD- 292 (391)
... ..+.++++++... +.+ . ...+. .||+||+||++||+++ +.+|+++|+|
T Consensus 71 ~~~-----~~~~i~~~~~~~~--~~~--~---t~~e~---------------lLS~G~~~rl~la~al-~~~p~llllDE 122 (171)
T cd03228 71 LES-----LRKNIAYVPQDPF--LFS--G---TIREN---------------ILSGGQRQRIAIARAL-LRDPPILILDE 122 (171)
T ss_pred HHH-----HHhhEEEEcCCch--hcc--c---hHHHH---------------hhCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 211 2245666665421 111 0 00000 1999999999999999 9999999999
Q ss_pred -----CHHHHHHHHHHHHHHH
Q 016339 293 -----DWERYQYYFQLLDEIR 308 (391)
Q Consensus 293 -----D~~~~~~~~~ll~el~ 308 (391)
|+.....+.+++.++.
T Consensus 123 P~~gLD~~~~~~l~~~l~~~~ 143 (171)
T cd03228 123 ATSALDPETEALILEALRALA 143 (171)
T ss_pred CCcCCCHHHHHHHHHHHHHhc
Confidence 8889999999998875
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-21 Score=187.65 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=118.5
Q ss_pred CCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCC---CcceecCccc
Q 016339 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL---GSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~---G~I~~~g~~v 209 (391)
.+++++++|++ ..++++++|++ +|++++|+||||||||||+++|+|+. .|++ |+|.++|.++
T Consensus 7 ~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~------------~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 7 EFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL------------LPDDNPNSKITVDGITL 74 (282)
T ss_pred EEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc------------CCCCCCCcEEEECCEEC
Confidence 45788899964 46999999999 99999999999999999999999999 8887 8999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCC-----CcccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGG-----GYLADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKA 269 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~-----~~l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSg 269 (391)
...... .....+++++++.. ..+.++ .+. ....+..+++....+..|. .|||
T Consensus 75 ~~~~~~-----~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~LS~ 146 (282)
T PRK13640 75 TAKTVW-----DIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPA---NLSG 146 (282)
T ss_pred CcCCHH-----HHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcc---cCCH
Confidence 432211 12245677776531 111111 111 1123445677777788887 9999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 147 G~~qrv~laral-~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 192 (282)
T PRK13640 147 GQKQRVAIAGIL-AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK 192 (282)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999 9999999999 889999999999988654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-22 Score=190.60 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=115.3
Q ss_pred CCeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.++|.++
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~i 71 (280)
T PRK13649 4 NLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH------------VPTQGSVRVDDTLI 71 (280)
T ss_pred EEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEc
Confidence 35788999964 35899999999 89999999999999999999999999 99999999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCC--C---cccCCc-------ccc--------hHHHHhCChh-HHhhhchhHHhhcC
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGG--G---YLADTP-------GFN--------QPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~--~---~l~Dtp-------g~~--------~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
...+.... .....+.++++++... . .+.++- ++. ...+..+++. .+.+..+. .||
T Consensus 72 ~~~~~~~~-~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LS 147 (280)
T PRK13649 72 TSTSKNKD-IKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPF---ELS 147 (280)
T ss_pred cccccccC-HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcc---cCC
Confidence 54321000 0012345777777531 1 111110 111 1112334443 34455566 899
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++++.
T Consensus 148 gG~~qrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (280)
T PRK13649 148 GGQMRRVAIAGIL-AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS 194 (280)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 9999999999999 9999999999 889999999999988653
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-21 Score=178.79 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=112.0
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|+. ..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|+++|.++..
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~ 70 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV------------ELSSGSILIDGVDISK 70 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCCEEEECCEEhHh
Confidence 346889999964 36999999999 89999999999999999999999999 9999999999977643
Q ss_pred cccccCCCcceeeeEEEEeccCCC---cccCCcc----cc----hHHHHhCChhHHhh-----------hchhHHhhcCc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPG----FN----QPSLLKVTKQSLAQ-----------TFPEIKEMLKA 269 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dtpg----~~----~~~l~~~~~~~l~~-----------~~p~~~~~LSg 269 (391)
.+... ..+.++++++.... .+.++-. .. ...+..+++.+... ..+. .||+
T Consensus 71 ~~~~~-----~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~---~LS~ 142 (221)
T cd03244 71 IGLHD-----LRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGE---NLSV 142 (221)
T ss_pred CCHHH-----HhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC---cCCH
Confidence 32211 23456666665321 1111100 01 11122334433332 2344 8999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||+||++||+++ +.+|+++|+| |+.....+.++|.++.
T Consensus 143 G~~qr~~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 143 GQRQLLCLARAL-LRKSKILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 999999999999 9999999999 8889999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-21 Score=183.04 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=112.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-----CCCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-----~~G~I~~~g~~v 209 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +| ++|+|+++|.++
T Consensus 6 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 6 ETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL------------ELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred EEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CcccCCCCceEEEECCEEc
Confidence 4578899998888999999999 99999999999999999999999998 54 599999999877
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc----ccCCccc-----------------chHHHHhCCh----hHHhhhchhHH
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY----LADTPGF-----------------NQPSLLKVTK----QSLAQTFPEIK 264 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg~-----------------~~~~l~~~~~----~~l~~~~p~~~ 264 (391)
....... ......++++++....+ +.++..+ ....+..+++ ....+..+.
T Consensus 74 ~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-- 148 (253)
T PRK14267 74 YSPDVDP---IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS-- 148 (253)
T ss_pred cccccCh---HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChh--
Confidence 4211000 01234577777763221 1111100 0111222232 122344455
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 149 -~LS~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14267 149 -NLSGGQRQRLVIARAL-AMKPKILLMDEPTANIDPVGTAKIEELLFELKK 197 (253)
T ss_pred -hCCHHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh
Confidence 8999999999999999 9999999999 88899999999999854
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-21 Score=182.38 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=113.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.+.|++..++++++|.+ +|++++|+||||||||||+++|+|+..+. .|++|+|.++|.++.....
T Consensus 4 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------~~~~G~i~~~g~~i~~~~~ 74 (246)
T PRK14269 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKI---------AKIDGLVEIEGKDVKNQDV 74 (246)
T ss_pred eeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---------CCCceEEEECCEecccCCH
Confidence 3578899998878999999999 89999999999999999999999987210 3689999999987754321
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCccc-----------------chHHHHhCChh----HHhhhchhHHhhcCcc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTPGF-----------------NQPSLLKVTKQ----SLAQTFPEIKEMLKAN 270 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg~-----------------~~~~l~~~~~~----~l~~~~p~~~~~LSgG 270 (391)
. ...+.++++++....+ +.++..+ ....+..+++. .+.+..+. .||||
T Consensus 75 ~-----~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~G 146 (246)
T PRK14269 75 V-----ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNAL---ALSGG 146 (246)
T ss_pred H-----HHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcc---cCCHH
Confidence 1 1234577777764322 1111100 01112233331 22333444 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++++| |+.....+.++|.++..
T Consensus 147 ~~qrv~laral-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 190 (246)
T PRK14269 147 QQQRLCIARAL-AIKPKLLLLDEPTSALDPISSGVIEELLKELSH 190 (246)
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 88899999999998754
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-21 Score=180.90 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=109.9
Q ss_pred CeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
++++.++|++ ..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~ 70 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY------------VPENGRVLVDGHDLALAD 70 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECCeehHhcC
Confidence 5788889964 46899999999 99999999999999999999999999 999999999998764332
Q ss_pred cccCCCcceeeeEEEEeccCCC---cccCC-----cccchH----HHHhCChhHHh-----------hhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFNQP----SLLKVTKQSLA-----------QTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~~~----~l~~~~~~~l~-----------~~~p~~~~~LSgG 270 (391)
... ..+.++++++.... .+.++ ++.... .+...+..++. +..+. .||||
T Consensus 71 ~~~-----~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~LSgG 142 (237)
T cd03252 71 PAW-----LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA---GLSGG 142 (237)
T ss_pred HHH-----HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCC---cCCHH
Confidence 211 22346666665221 11111 111111 11112223322 23344 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|+||++||+++ +.+|+++|+| |+.....+.++|.++.
T Consensus 143 ~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 185 (237)
T cd03252 143 QRQRIAIARAL-IHNPRILIFDEATSALDYESEHAIMRNMHDIC 185 (237)
T ss_pred HHHHHHHHHHH-hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 8899999999999875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-21 Score=181.51 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=109.7
Q ss_pred CeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
++++.++|++. .++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|..+...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~ 70 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY------------DVDSGRILIDGHDVRDYT 70 (234)
T ss_pred EEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------cCCCCEEEECCEEhhhCC
Confidence 57888899765 7999999999 99999999999999999999999999 999999999997664332
Q ss_pred cccCCCcceeeeEEEEeccCCC---cccCC-----cccchH----HHHhCChhHHh-----------hhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFNQP----SLLKVTKQSLA-----------QTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~~~----~l~~~~~~~l~-----------~~~p~~~~~LSgG 270 (391)
... ..+.+++++++... .+.++ +..... .+...+..++. +..+. .||+|
T Consensus 71 ~~~-----~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~LS~G 142 (234)
T cd03251 71 LAS-----LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGV---KLSGG 142 (234)
T ss_pred HHH-----HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCC---cCCHH
Confidence 110 12345666654211 11111 000101 11112222222 22334 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 143 ~~qrv~la~al-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 186 (234)
T cd03251 143 QRQRIAIARAL-LKDPPILILDEATSALDTESERLVQAALERLMK 186 (234)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999 9999999999 88999999999998853
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-21 Score=205.53 Aligned_cols=155 Identities=25% Similarity=0.258 Sum_probs=120.3
Q ss_pred cCCeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++| ++..+|+++||.+ +|++++|+||||||||||+++|+|++ |++|+|.++|.++..+
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-------------p~~G~I~i~g~~i~~~ 416 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-------------PYQGSLKINGIELREL 416 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-------------CCCcEEEECCEecccC
Confidence 5578887644 5567999999999 99999999999999999999999986 5689999999988777
Q ss_pred ccccCCCcceeeeEEEEecc---CCCcccCC-----cccchHH----HHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLS---GGGYLADT-----PGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt-----pg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... .++++++++|+ +.+.+.|+ |.+.+.. +...++.+....+|. -...||||||
T Consensus 417 ~~~~-----lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 417 DPES-----WRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred CHHH-----HHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 6543 46789999997 33444433 3333332 334455555444443 2236999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |.+....+.+.+.++.
T Consensus 492 QRialARAl-l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~ 532 (588)
T PRK11174 492 QRLALARAL-LQPCQLLLLDEPTASLDAHSEQLVMQALNAAS 532 (588)
T ss_pred HHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 8889999988888764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-21 Score=180.55 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=112.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcC--CCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS--PHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl--~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|++..++++++|.+ +|++++|+|+||||||||+++|+|+ . +|++|+|+++|.++..
T Consensus 8 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~------------~~~~G~i~~~g~~~~~ 75 (252)
T CHL00131 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAY------------KILEGDILFKGESILD 75 (252)
T ss_pred EEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcC------------cCCCceEEECCEEccc
Confidence 34678889998778999999999 9999999999999999999999998 4 7899999999987755
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCC--------------ccc--------chHHHHhCChh-HHhhhchhHH
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADT--------------PGF--------NQPSLLKVTKQ-SLAQTFPEIK 264 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt--------------pg~--------~~~~l~~~~~~-~l~~~~p~~~ 264 (391)
.+.... ....+.++++....+ ..+. +.. ....+..+++. .+.+..+.
T Consensus 76 ~~~~~~----~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 149 (252)
T CHL00131 76 LEPEER----AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN-- 149 (252)
T ss_pred CChhhh----heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc--
Confidence 432110 112355555542111 0000 000 01122333433 23334332
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
..|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++...
T Consensus 150 ~~LSgG~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 200 (252)
T CHL00131 150 EGFSGGEKKRNEILQMA-LLDSELAILDETDSGLDIDALKIIAEGINKLMTS 200 (252)
T ss_pred cCCCHHHHHHHHHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC
Confidence 14999999999999999 9999999999 889999999999998643
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-21 Score=186.10 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=113.6
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+..+.. ..|++|+|.++|.++....
T Consensus 14 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p-------~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYP-------EQRAEGEILLDGENILTPK 86 (260)
T ss_pred EEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCC-------CCCcceEEEECCEEccccc
Confidence 34688999998878999999999 999999999999999999999999972000 0158999999998764211
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc--------ccc--------hHHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP--------GFN--------QPSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp--------g~~--------~~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
.. .....+.++++++....+ +.++. +.. ...+..+++ ....+..+. .||||
T Consensus 87 ~~---~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~G 160 (260)
T PRK10744 87 QD---IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGY---SLSGG 160 (260)
T ss_pred cc---hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCC---CCCHH
Confidence 00 001235677777763211 11110 110 111222232 122344444 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 161 q~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 204 (260)
T PRK10744 161 QQQRLCIARGI-AIRPEVLLLDEPCSALDPISTGRIEELITELKQ 204 (260)
T ss_pred HHHHHHHHHHH-HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88899999999999853
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-21 Score=197.56 Aligned_cols=159 Identities=21% Similarity=0.252 Sum_probs=125.2
Q ss_pred CeeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++.|.++ .++.+++|++ +|+.++|||+||||||||+++|+|+. +|++|+|.++|.+...++.
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~------------~~~~G~I~vng~~l~~l~~ 390 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL------------APTQGEIRVNGIDLRDLSP 390 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC------------CCCCceEEECCccccccCH
Confidence 35889999877 8999999999 89999999999999999999999999 9999999999999887776
Q ss_pred ccCCCcceeeeEEEEecc---CCCcccCC-----cccchH----HHHhCChhHHhhh-------chhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLS---GGGYLADT-----PGFNQP----SLLKVTKQSLAQT-------FPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~---~~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~-------~p~~~~~LSgGq~qr~ 275 (391)
.. ..++++++++. +.+.+.+| |...+. .+...++.++... ..+-...|||||+||+
T Consensus 391 ~~-----~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 391 EA-----WRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred HH-----HHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence 43 35778888887 23334444 222222 2334455444444 1122236999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
++|||+ +++++|+++| |.++...+++.|.++.++.-.
T Consensus 466 aLARAl-l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktv 508 (559)
T COG4988 466 ALARAL-LSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTV 508 (559)
T ss_pred HHHHHh-cCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeE
Confidence 999999 9999999999 889999999999998876433
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-21 Score=183.42 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=116.0
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.+.|++. ++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 3 ~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~------------~p~~G~v~i~g~~~~~~~~- 68 (235)
T cd03299 3 VENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI------------KPDSGKILLNGKDITNLPP- 68 (235)
T ss_pred eEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEcCcCCh-
Confidence 56788888764 899999999 89999999999999999999999999 9999999999987643321
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCcc------------c---chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTPG------------F---NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtpg------------~---~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++.. . ....+..+++....+..+. .|||||+||++
T Consensus 69 ------~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl~ 139 (235)
T cd03299 69 ------EKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE---TLSGGEQQRVA 139 (235)
T ss_pred ------hHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcc---cCCHHHHHHHH
Confidence 123566666653211 111100 0 1122445566666677776 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +..|+++++| |+.....+.+++.++..+
T Consensus 140 laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~ 178 (235)
T cd03299 140 IARAL-VVNPKILLLDEPFSALDVRTKEKLREELKKIRKE 178 (235)
T ss_pred HHHHH-HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-21 Score=210.25 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=120.6
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|+. ..+|+++|+++ +|+.++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~------------~p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY------------QPWSGEILFDGIPREE 545 (710)
T ss_pred EEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEeHHH
Confidence 557899999974 57999999999 89999999999999999999999999 9999999999998877
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC-----cccchH----HHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQP----SLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
++... .++.+++++|+. .+.+.|+ |..... .+...++.+....+|. -...|||||
T Consensus 546 ~~~~~-----lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 546 IPREV-----LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred CCHHH-----HHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 66532 467788998873 3333333 222222 2334455555444443 224699999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
+||++||||+ +.+|+++|+| |+.....+.+.+.+
T Consensus 621 rQRiaLARal-l~~p~iliLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 621 RQRLEIARAL-VRNPSILILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHHHH-hhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence 9999999999 9999999999 78888888887765
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-21 Score=204.90 Aligned_cols=156 Identities=19% Similarity=0.259 Sum_probs=122.6
Q ss_pred hcCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 134 ~~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+.+++++++|.+ ..+|+++|+++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~------------~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW------------DPQQGEILLNGQPIA 405 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEEhh
Confidence 3567899999964 46899999999 89999999999999999999999999 999999999999887
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
.++... ..+++++++|+. .+.+.++ |...+ ..+..+++.+.... |. ....||||
T Consensus 406 ~~~~~~-----~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 406 DYSEAA-----LRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred hCCHHH-----HHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 665432 346688888873 3333333 22222 22345566555555 43 22369999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|+||++||||+ +.+|+++|+| |++..+.+.+.+.++.
T Consensus 480 qrqRialARal-l~~~~ililDE~ts~lD~~t~~~i~~~l~~~~ 522 (574)
T PRK11160 480 EQRRLGIARAL-LHDAPLLLLDEPTEGLDAETERQILELLAEHA 522 (574)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999999 9999999999 8889999998888774
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-21 Score=200.54 Aligned_cols=156 Identities=12% Similarity=0.144 Sum_probs=116.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC--CCCcceecCccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p--~~G~I~~~g~~v~~ 211 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+|+|+|+. +| ++|+|+++|.++..
T Consensus 6 l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~~~G~i~~~g~~~~~ 73 (506)
T PRK13549 6 LEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY------------PHGTYEGEIIFEGEELQA 73 (506)
T ss_pred EEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCeEEEECCEECCC
Confidence 34578999998888999999999 89999999999999999999999998 64 89999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc---------c---------cchHHHHhCChhHHhhhchhHHhhcCc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP---------G---------FNQPSLLKVTKQSLAQTFPEIKEMLKA 269 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp---------g---------~~~~~l~~~~~~~l~~~~p~~~~~LSg 269 (391)
.+... ...+.++++++....+ +.++- + .....+..+++....+..+. .|||
T Consensus 74 ~~~~~----~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSg 146 (506)
T PRK13549 74 SNIRD----TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG---NLGL 146 (506)
T ss_pred CCHHH----HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh---hCCH
Confidence 22110 0123466666652211 11100 0 01123444555555566666 9999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 147 Gqkqrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 192 (506)
T PRK13549 147 GQQQLVEIAKAL-NKQARLLILDEPTASLTESETAVLLDIIRDLKAH 192 (506)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 999999999999 9999999999 899999999999998643
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-21 Score=180.16 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=111.5
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.++++.++|++ ..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 12 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~ 79 (226)
T cd03248 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY------------QPQGGQVLLDGKPIS 79 (226)
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCcEEEECCCchH
Confidence 346888999964 36999999999 99999999999999999999999999 999999999997764
Q ss_pred ccccccCCCcceeeeEEEEeccCCC---cccCCcc-----cc-------------hHHHHhC--ChhHHhhhchhHHhhc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPG-----FN-------------QPSLLKV--TKQSLAQTFPEIKEML 267 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dtpg-----~~-------------~~~l~~~--~~~~l~~~~p~~~~~L 267 (391)
..... ...+.++++++.... .+.++-. .. ...+..+ ++....+..+. .|
T Consensus 80 ~~~~~-----~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~---~L 151 (226)
T cd03248 80 QYEHK-----YLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGS---QL 151 (226)
T ss_pred HcCHH-----HHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCC---cC
Confidence 33211 122446666655211 1111100 00 0111122 23333344444 89
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||||+|||+||+|+ +.+|+++|+| |+.....+.+++.++..
T Consensus 152 SgG~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 198 (226)
T cd03248 152 SGGQKQRVAIARAL-IRNPQVLILDEATSALDAESEQQVQQALYDWPE 198 (226)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC
Confidence 99999999999999 9999999999 88899999999988753
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-21 Score=173.12 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=104.0
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++| ++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++......
T Consensus 7 ~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (182)
T cd03215 7 VRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR------------PPASGEITLDGKPVTRRSPR 70 (182)
T ss_pred EeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCccCHH
Confidence 45667777 899999999 89999999999999999999999999 99999999999877543211
Q ss_pred cCCCcceeeeEEEEeccCC-CcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec--
Q 016339 216 SGRGKHTTRHVSLLPLSGG-GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~-~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-- 292 (391)
. ...+.+++++++.. ..+.... ...+... ++. .||+||+||++||+++ +.+|+++++|
T Consensus 71 ~----~~~~~i~~~~q~~~~~~~~~~~----------t~~e~l~-~~~---~LS~G~~qrl~la~al-~~~p~llllDEP 131 (182)
T cd03215 71 D----AIRAGIAYVPEDRKREGLVLDL----------SVAENIA-LSS---LLSGGNQQKVVLARWL-ARDPRVLILDEP 131 (182)
T ss_pred H----HHhCCeEEecCCcccCcccCCC----------cHHHHHH-HHh---hcCHHHHHHHHHHHHH-ccCCCEEEECCC
Confidence 1 02345777776521 0111110 1111000 111 2999999999999999 9999999999
Q ss_pred ----CHHHHHHHHHHHHHHHHH
Q 016339 293 ----DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ----D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.+++.++..+
T Consensus 132 ~~~LD~~~~~~l~~~l~~~~~~ 153 (182)
T cd03215 132 TRGVDVGAKAEIYRLIRELADA 153 (182)
T ss_pred CcCCCHHHHHHHHHHHHHHHHC
Confidence 889999999999988643
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-21 Score=176.99 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=107.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++...++ ++|++ +|++++|+|+||||||||+++|+|+. +|++|+|+++|.++.....
T Consensus 3 ~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~ 69 (195)
T PRK13541 3 SLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM------------QPSSGNIYYKNCNINNIAK 69 (195)
T ss_pred EEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCcccChhhh
Confidence 3578889997766665 99999 89999999999999999999999999 9999999999976643210
Q ss_pred ccCCCcceeeeEEEEeccCC----CcccCCc----------ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGG----GYLADTP----------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~----~~l~Dtp----------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
..+.++++... ..+.++. ......+..+++.+..+..+. .||+||+||++||+|
T Consensus 70 ---------~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~~rl~la~a 137 (195)
T PRK13541 70 ---------PYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCY---SLSSGMQKIVAIARL 137 (195)
T ss_pred ---------hhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChh---hCCHHHHHHHHHHHH
Confidence 12344443211 1111111 011222344455555566666 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+ +.+|+++++| |+.....+.+++.+..
T Consensus 138 l-~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 170 (195)
T PRK13541 138 I-ACQSDLWLLDEVETNLSKENRDLLNNLIVMKA 170 (195)
T ss_pred H-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 9 9999999999 8888888888887643
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-21 Score=181.20 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=112.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+.... -..|++|+|.++|.++...+.
T Consensus 8 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-------~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 8 EARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLI-------PGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred EEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccC-------CCCCCceEEEECCEEcccccc
Confidence 4578899998878999999999 89999999999999999999999986100 002689999999987643211
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc---------hHHHHhCChh----HHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN---------QPSLLKVTKQ----SLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~---------~~~l~~~~~~----~l~~~~p~~~~~LSgGq 271 (391)
.. ....+.++++++....+ +.++- +.. ...+..+++. ...+..+. .|||||
T Consensus 81 ~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LSgGq 154 (253)
T PRK14242 81 DV---VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESAL---GLSGGQ 154 (253)
T ss_pred CH---HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcc---cCCHHH
Confidence 00 01235678887764322 11110 000 0011222221 12233444 899999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 155 ~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14242 155 QQRLCIARAL-AVEPEVLLMDEPASALDPIATQKIEELIHELKA 197 (253)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 88999999999999854
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-21 Score=184.92 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=117.5
Q ss_pred cCCeeEEEEc--CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~--~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++| +...+|+++||.| +|++++|+||||+|||||+++|+|+. + ++|+|+++|.++..
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~------------~-~~G~I~i~g~~i~~ 69 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL------------N-TEGDIQIDGVSWNS 69 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc------------C-CCcEEEECCEEhhh
Confidence 3468899999 4457999999999 89999999999999999999999998 6 78999999987754
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCC--------cccchHHHHhCChhHHhhhchhH--------HhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADT--------PGFNQPSLLKVTKQSLAQTFPEI--------KEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt--------pg~~~~~l~~~~~~~l~~~~p~~--------~~~LSgGq~ 272 (391)
++... ..+.+++++++...+ +.++ .......+..+++....+.+|.- ...||+||+
T Consensus 70 ~~~~~-----lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 70 VPLQK-----WRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred CCHHH-----HhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence 43221 234577777663221 1111 11112334566777777777761 012999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |+.....+.++|.++.
T Consensus 145 qrl~LaRal-l~~p~illlDEpts~LD~~~~~~l~~~l~~~~ 185 (275)
T cd03289 145 QLMCLARSV-LSKAKILLLDEPSAHLDPITYQVIRKTLKQAF 185 (275)
T ss_pred HHHHHHHHH-hcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 999999999 9999999999 8888888888888764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-21 Score=207.15 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=122.8
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|.+ ..+++++|+++ +|+.++|+|+||||||||+++|+|++ +|++|+|.++|.++..+
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~------------~p~~G~I~idg~~i~~~ 408 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY------------PLTEGEIRLDGRPLSSL 408 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCceEEECCEEhhhC
Confidence 557889999964 56899999999 99999999999999999999999999 99999999999988766
Q ss_pred ccccCCCcceeeeEEEEeccC---CCcccCCcc----cc----hHHHHhCChhHHhhhchh--------HHhhcCccccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPG----FN----QPSLLKVTKQSLAQTFPE--------IKEMLKANEPA 273 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~---~~~l~Dtpg----~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~q 273 (391)
+... ..+++++++|+. .+.+.++-. .. ...+..+++.+....+|. ....|||||+|
T Consensus 409 ~~~~-----l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 409 SHSV-----LRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred CHHH-----HHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 5432 457788888873 233333211 11 223444555555555543 22369999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|++||||+ +.+|+++|+| |++..+.+.+.+.++..
T Consensus 484 RialARaL-l~~~~illlDEpts~LD~~t~~~i~~~l~~~~~ 524 (592)
T PRK10790 484 LLALARVL-VQTPQILILDEATANIDSGTEQAIQQALAAVRE 524 (592)
T ss_pred HHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC
Confidence 99999999 9999999999 88899999888887653
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-21 Score=199.49 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=114.9
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+...
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~~ 69 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY------------QKDSGSILFQGKEIDFKSSKE 69 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCceEEEECCEECCCCCHHH
Confidence 57888998888999999999 99999999999999999999999999 999999999998764322110
Q ss_pred CCCcceeeeEEEEeccCCCc----ccCCc--------c----------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 217 GRGKHTTRHVSLLPLSGGGY----LADTP--------G----------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 217 ~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g----------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..+.++++++....+ +.++- + .....+..+++....+..+. .|||||+||
T Consensus 70 ~----~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~qr 142 (491)
T PRK10982 70 A----LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA---TLSVSQMQM 142 (491)
T ss_pred H----HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh---hCCHHHHHH
Confidence 0 123466666653211 11110 0 01112334444444556666 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....+.++|.++...
T Consensus 143 v~lA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 183 (491)
T PRK10982 143 IEIAKAF-SYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER 183 (491)
T ss_pred HHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 889999999999998643
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-21 Score=186.25 Aligned_cols=161 Identities=15% Similarity=0.177 Sum_probs=113.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..++++++|.+ +|++++|+||||||||||+++|+|+..+.. ..|++|+|.++|.++....
T Consensus 5 l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~-------~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIP-------GARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred EEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCccc-------CCCcceEEEECCEeccccc
Confidence 34688999998888999999999 999999999999999999999999982100 0137999999998764211
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc-c--------hHHHHhCCh----hHHhhhchhHHhhcCc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF-N--------QPSLLKVTK----QSLAQTFPEIKEMLKA 269 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~-~--------~~~l~~~~~----~~l~~~~p~~~~~LSg 269 (391)
... ....+.++++++....+ +.++- +. . ...+..+++ ....+..+. .|||
T Consensus 78 ~~~---~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~ 151 (258)
T PRK14241 78 VDP---VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGG---GLSG 151 (258)
T ss_pred cCh---HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcc---cCCH
Confidence 100 01235577777753221 11110 00 0 011222232 123344444 8999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 152 G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 196 (258)
T PRK14241 152 GQQQRLCIARAI-AVEPDVLLMDEPCSALDPISTLAIEDLINELKQ 196 (258)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 999999999999 9999999999 88999999999999853
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-21 Score=197.34 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=123.5
Q ss_pred CCeeEEEEcCCc----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~~----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++++++|... .++++|||++ +||++||||.|||||||+.++|+|+..... ..++|+|.|+|.++.
T Consensus 7 ~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~--------~~~~G~I~~~g~dl~ 78 (539)
T COG1123 7 EVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG--------RITSGEVILDGRDLL 78 (539)
T ss_pred EEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC--------cccceEEEECCcchh
Confidence 357788887543 5899999999 999999999999999999999999983210 235899999999887
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccC---------------Ccc----c---chHHHHhCChhHHh--hhchhHHhh
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLAD---------------TPG----F---NQPSLLKVTKQSLA--QTFPEIKEM 266 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~D---------------tpg----~---~~~~l~~~~~~~l~--~~~p~~~~~ 266 (391)
..+.... ....-+.++++||+.-..+.. ... . ....+..+++.+-. +.||+ +
T Consensus 79 ~l~~~~~-r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPh---e 154 (539)
T COG1123 79 GLSEREM-RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPH---Q 154 (539)
T ss_pred cCCHHHH-HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCc---c
Confidence 7665422 111236799999983211110 000 0 11223455554333 45999 9
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
|||||+||+.||+|+ +.+|+++|+| |+....+++++|+++..+...
T Consensus 155 LSGG~rQRv~iAmAL-a~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~ 206 (539)
T COG1123 155 LSGGMRQRVMIAMAL-ALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGM 206 (539)
T ss_pred cCchHHHHHHHHHHH-hCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCc
Confidence 999999999999999 9999999999 889999999999999977655
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-21 Score=179.70 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=108.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+.. .+|++|+|.++|.++.....
T Consensus 3 ~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------~~~~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 3 SIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRED----------YEVTGGTVEFKGKDLLELSP 72 (248)
T ss_pred EEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCcc----------CCCCceEEEECCCccccCCH
Confidence 3578899998878999999999 899999999999999999999999940 05899999999977644322
Q ss_pred ccCCCcceeeeEEEEeccCCCcc-----------cCCc----c---cc--------hHHHHhCCh-hHHhhhchhHHhhc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGYL-----------ADTP----G---FN--------QPSLLKVTK-QSLAQTFPEIKEML 267 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~l-----------~Dtp----g---~~--------~~~l~~~~~-~~l~~~~p~~~~~L 267 (391)
... ....++++++....+. .... . .. ...+..+++ .++.+..+ ...|
T Consensus 73 ~~~----~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~L 146 (248)
T PRK09580 73 EDR----AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGF 146 (248)
T ss_pred HHH----hhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCC
Confidence 110 1134556555421110 0000 0 00 001111111 11111111 1269
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.+++.+++..
T Consensus 147 S~G~~qrv~laral-~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~ 194 (248)
T PRK09580 147 SGGEKKRNDILQMA-VLEPELCILDESDSGLDIDALKIVADGVNSLRDG 194 (248)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999 9999999999 889999999999988654
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-21 Score=184.71 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=113.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+..+... .|++|+|+++|.++....
T Consensus 8 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 8 IETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-------IKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred EEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcC-------CCCceEEEECCEeccccc
Confidence 34678899998888999999999 9999999999999999999999999821000 136999999998764211
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------cc-c--------hHHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF-N--------QPSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~-~--------~~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
.. .....+.++++++....+ +.++- +. . ...+..+++ ....+..+. .||||
T Consensus 81 ~~---~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LSgG 154 (254)
T PRK14273 81 FD---ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNAL---SLSGG 154 (254)
T ss_pred cc---HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcc---cCCHH
Confidence 00 001235677877763321 11110 00 0 011112222 122344455 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.+++.
T Consensus 155 ~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (254)
T PRK14273 155 QQQRLCIARTL-AIEPNVILMDEPTSALDPISTGKIEELIINLKE 198 (254)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88999999999999853
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-21 Score=185.78 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=113.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++++.|++..+++++||++ +|++++|+||||||||||+++|+|+..+. ...|++|+|.++|.++....
T Consensus 13 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-------~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLI-------KNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred EEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcc-------cCCCcceEEEECCEEccccc
Confidence 34578888998878999999999 99999999999999999999999998210 00148999999998764321
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc--------hHHHHhCCh----hHHhhhchhHHhhcCccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN--------QPSLLKVTK----QSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~--------~~~l~~~~~----~~l~~~~p~~~~~LSgGq 271 (391)
... ....+.++++++....+ +.++- +.. ...+..+++ ....+..+. .|||||
T Consensus 86 ~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LSgG~ 159 (258)
T PRK14268 86 VDV---VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPAL---SLSGGQ 159 (258)
T ss_pred chH---HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChh---hCCHHH
Confidence 100 01234577777763321 11111 010 011222222 122334444 899999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 160 ~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 202 (258)
T PRK14268 160 QQRLCIARTL-AVKPKIILFDEPTSALDPISTARIEDLIMNLKK 202 (258)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh
Confidence 9999999999 9999999999 88999999999999854
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-20 Score=178.02 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=108.3
Q ss_pred EEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCc
Q 016339 142 CSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220 (391)
Q Consensus 142 ~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~ 220 (391)
.+|+...++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~~~~~~~------ 90 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL------------QPTSGEVRVAGLVPWKRRK------ 90 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEccccch------
Confidence 4567778999999999 99999999999999999999999999 9999999999875432111
Q ss_pred ceeeeEEEEe-ccCCCc----ccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 221 HTTRHVSLLP-LSGGGY----LADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 221 ~ttr~i~~v~-~~~~~~----l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
...+.+++++ +....+ +.++ .++. ...+..+++.+..+..+. .|||||+||++||+|
T Consensus 91 ~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~qrl~la~a 167 (236)
T cd03267 91 KFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVR---QLSLGQRMRAEIAAA 167 (236)
T ss_pred hhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChh---hCCHHHHHHHHHHHH
Confidence 1234456654 221111 1111 0110 112334455555566666 899999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 168 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 202 (236)
T cd03267 168 L-LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202 (236)
T ss_pred H-hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9 9999999999 889999999999998653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-21 Score=203.69 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=121.0
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|.+ ..+++++++++ +|+.++|+|+||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~g~~i~~ 409 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY------------DIDEGEILLDGHDLRD 409 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc------------CCCCceEEECCEEhhh
Confidence 557889999964 56999999999 89999999999999999999999999 9999999999998877
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC-----cc-cchH----HHHhCChhHHhhhchhH--------HhhcCcc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PG-FNQP----SLLKVTKQSLAQTFPEI--------KEMLKAN 270 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg-~~~~----~l~~~~~~~l~~~~p~~--------~~~LSgG 270 (391)
++... ..+.+++++|+. .+.+.++ |. ..+. .+..+++.+....+|.- ...||||
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 410 YTLAS-----LRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred cCHHH-----HHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 65432 456788888873 3333222 11 2222 23344555554444431 2369999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||||+ +.+|+++|+| |++....+.+.+.++.+
T Consensus 485 qrQRi~LARal-l~~~~ililDEptsaLD~~t~~~i~~~l~~~~~ 528 (582)
T PRK11176 485 QRQRIAIARAL-LRDSPILILDEATSALDTESERAIQAALDELQK 528 (582)
T ss_pred HHHHHHHHHHH-HhCCCEEEEECccccCCHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 88888888888887643
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-22 Score=182.91 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=119.3
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc-----
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV----- 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v----- 209 (391)
.++.++++|++..++++|||.+ +|++++++|||||||||++++|+|++ .|++|+|.++|.++
T Consensus 4 ~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll------------e~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 4 EIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL------------EPTEGEITWNGGPLSQEIK 71 (300)
T ss_pred EEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC------------CccCceEEEcCcchhhhhh
Confidence 4578999999999999999999 89999999999999999999999999 99999999999654
Q ss_pred ---cccccccCCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC
Q 016339 210 ---GEVSTKSGRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 210 ---~~v~~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~ 284 (391)
+++++..++++.+| ..+.|+.--.|....+.......++..+++........+ .||.|++|++.|-.++ +|
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk---~LSKGnqQKIQfisav-iH 147 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIK---ELSKGNQQKIQFISAV-IH 147 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHH---HhhhhhhHHHHHHHHH-hc
Confidence 44555444444443 111111100011111111111223444554444444444 9999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 285 EPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+|+++|+| ||-+.+.+.+.+.+++++..+
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Gat 182 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGAT 182 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCE
Confidence 99999999 999999999999999877655
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-21 Score=207.95 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=121.1
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|+ +..+|+++|+++ +|+.++|+||||||||||+++|+|++ +|++|+|.++|.++..+
T Consensus 474 I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~------------~p~~G~I~idg~~i~~~ 541 (708)
T TIGR01193 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF------------QARSGEILLNGFSLKDI 541 (708)
T ss_pred EEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCcEEEECCEEHHHc
Confidence 55789999996 457999999999 89999999999999999999999999 99999999999998777
Q ss_pred ccccCCCcceeeeEEEEeccC---CCcccCC------cccchH----HHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSG---GGYLADT------PGFNQP----SLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt------pg~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
+... .++++++++|+. .+.+.|+ |...+. .+...++.+....+|. -...|||||
T Consensus 542 ~~~~-----lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 542 DRHT-----LRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred CHHH-----HHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 6543 457788998873 2333332 222222 2333455554444442 224699999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
+||++||||+ +.+|+++|+| |++....+.+.+.++
T Consensus 617 rQRialARal-l~~p~iliLDE~Ts~LD~~te~~i~~~L~~~ 657 (708)
T TIGR01193 617 KQRIALARAL-LTDSKVLILDESTSNLDTITEKKIVNNLLNL 657 (708)
T ss_pred HHHHHHHHHH-hhCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 788888888888764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-21 Score=207.65 Aligned_cols=158 Identities=16% Similarity=0.254 Sum_probs=124.3
Q ss_pred hcCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 134 ~~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+.+++++++|++ ..+|+++|+++ +|++++|+|+||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~------------~p~~G~I~idg~~l~ 530 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY------------QPTEGSVLLDGVDIR 530 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEEhh
Confidence 3567899999964 46899999999 89999999999999999999999999 999999999999887
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-----cccchH----HHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQP----SLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
.++... ..+++++++|+. .+.+.++ |...+. .+...++.+....+|. ....||||
T Consensus 531 ~~~~~~-----lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 531 QIDPAD-----LRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred hCCHHH-----HHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 766532 457788998873 3333333 222222 2344555555555553 12379999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||||+ +.+|+++|+| |++....+.+.+.++..
T Consensus 606 QrQRlalARal-l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~ 649 (694)
T TIGR03375 606 QRQAVALARAL-LRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA 649 (694)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 88999999998887753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-21 Score=175.53 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=105.3
Q ss_pred CeeEEEEcCCc-----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 137 YEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 137 ~~~v~~s~~~~-----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
++++.++|++. .+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++| .++
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~------------~~~~G~i~~~g-~i~ 69 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL------------EKLSGSVSVPG-SIA 69 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC------------CCCCCeEEEcC-EEE
Confidence 57889999764 6999999999 89999999999999999999999999 99999999998 677
Q ss_pred ccccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhch--------hHHhhcCccccccccccccc
Q 016339 211 EVSTKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP--------EIKEMLKANEPAKCSFNNCL 281 (391)
Q Consensus 211 ~v~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p--------~~~~~LSgGq~qr~~iaral 281 (391)
.+++.+.....+. .++.+ .. .. . .......+..+++......+| .....||+||+||++||+|+
T Consensus 70 ~~~q~~~l~~~t~~enl~~-~~----~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 70 YVSQEPWIQNGTIRENILF-GK----PF-D-EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred EEecCchhccCcHHHHhcc-CC----Cc-C-HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 7777654332221 22222 10 00 0 101111122223332222222 11138999999999999999
Q ss_pred ccCCCcEEEec------CHHHHHHHHH-HHHHHH
Q 016339 282 HLGEPGCVVKG------DWERYQYYFQ-LLDEIR 308 (391)
Q Consensus 282 h~~eP~~lllD------D~~~~~~~~~-ll~el~ 308 (391)
+.+|+++++| |+...+.+.+ ++.++.
T Consensus 143 -~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~ 175 (204)
T cd03250 143 -YSDADIYLLDDPLSAVDAHVGRHIFENCILGLL 175 (204)
T ss_pred -hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc
Confidence 9999999999 7777777766 455543
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-21 Score=202.68 Aligned_cols=156 Identities=22% Similarity=0.342 Sum_probs=121.7
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|++ ..+++++++.+ +|++++|+|+||||||||+++|+|++ +|++|+|.++|.++..+
T Consensus 335 I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~------------~p~~G~I~i~g~~i~~~ 402 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF------------DPQSGRILIDGTDIRTV 402 (588)
T ss_pred EEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECCEEhhhC
Confidence 557889999964 56899999999 99999999999999999999999999 99999999999988766
Q ss_pred ccccCCCcceeeeEEEEeccC---CCcccCC-----cccchH----HHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQP----SLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... ..+++++++|+. .+.+.|+ |...+. .+..+++.+....+|. -...|||||+
T Consensus 403 ~~~~-----~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 403 TRAS-----LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred CHHH-----HHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 5432 456788998873 3333333 333332 2334455554444442 1126999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++|||++ +.+|+++|+| |+.....+++.+.++.
T Consensus 478 QRialARal-l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~ 518 (588)
T PRK13657 478 QRLAIARAL-LKDPPILILDEATSALDVETEAKVKAALDELM 518 (588)
T ss_pred HHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 8889998888887764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-21 Score=182.35 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=113.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..++++++|.+ +|++++|+||||||||||+++|+|+.... ...|++|+|.++|.++...+
T Consensus 22 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-------~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLI-------PSARSEGEILYEGLNILDSN 94 (268)
T ss_pred EEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhccccc-------CCCCCceEEEECCEEccccc
Confidence 45688999998888999999999 99999999999999999999999985100 00168999999998764321
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------cc---------chHHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF---------NQPSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~---------~~~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
... ....+.++++++....+ +.++- +. ....+..+++ ....+..+. .||||
T Consensus 95 ~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LSgG 168 (268)
T PRK14248 95 INV---VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSAL---SLSGG 168 (268)
T ss_pred ccH---HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcc---cCCHH
Confidence 110 01234677877763321 11110 00 0001112222 123344455 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 169 q~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 212 (268)
T PRK14248 169 QQQRLCIARTL-AMKPAVLLLDEPASALDPISNAKIEELITELKE 212 (268)
T ss_pred HHHHHHHHHHH-hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88999999999999854
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-21 Score=182.84 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=115.8
Q ss_pred CCeeEEEEcC---------CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec
Q 016339 136 GYEPLFCSVE---------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (391)
Q Consensus 136 g~~~v~~s~~---------~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~ 205 (391)
.++++.++|+ +..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|+++
T Consensus 5 ~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~sG~i~~~ 72 (268)
T PRK10419 5 NVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE------------SPSQGNVSWR 72 (268)
T ss_pred EEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEEC
Confidence 3578888887 367999999999 99999999999999999999999999 8999999999
Q ss_pred CccccccccccCCCcceeeeEEEEeccCCCcc------cCCc--------c--------cchHHHHhCChh-HHhhhchh
Q 016339 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL------ADTP--------G--------FNQPSLLKVTKQ-SLAQTFPE 262 (391)
Q Consensus 206 g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l------~Dtp--------g--------~~~~~l~~~~~~-~l~~~~p~ 262 (391)
|.++....... .....+.+++++++....+ .++- + .....+..+++. .+.+..+.
T Consensus 73 g~~~~~~~~~~--~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 150 (268)
T PRK10419 73 GEPLAKLNRAQ--RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPP 150 (268)
T ss_pred CEeccccChhH--HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCc
Confidence 98765432210 0012345777777632111 1100 0 011123334443 34555565
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.||+||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 151 ---~LS~Ge~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 200 (268)
T PRK10419 151 ---QLSGGQLQRVCLARAL-AVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ 200 (268)
T ss_pred ---cCChHHHHHHHHHHHH-hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 9999999999 888999999999998764
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-20 Score=177.90 Aligned_cols=155 Identities=19% Similarity=0.264 Sum_probs=110.0
Q ss_pred CeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|+ +..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~v~~~g~~~~~~~~ 70 (236)
T cd03253 3 FENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY------------DVSSGSILIDGQDIREVTL 70 (236)
T ss_pred EEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCEEEECCEEhhhCCH
Confidence 578888995 466999999999 99999999999999999999999999 9999999999987654322
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCC-----cccc----hHHHHhCChhHHhhhchh--------HHhhcCcccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADT-----PGFN----QPSLLKVTKQSLAQTFPE--------IKEMLKANEPAK 274 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dt-----pg~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~qr 274 (391)
.. ..+.++++++....+ +.++ +... ...+...+..+....+|. -...||+||+||
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r 145 (236)
T cd03253 71 DS-----LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145 (236)
T ss_pred HH-----HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 11 123456665542211 1110 0001 111122233333222221 012899999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 146 l~la~aL-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 185 (236)
T cd03253 146 VAIARAI-LKNPPILLLDEATSALDTHTEREIQAALRDVSK 185 (236)
T ss_pred HHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999 9999999999 88899999999988764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-21 Score=175.40 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=110.6
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|+. ..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 7 l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~ 74 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL------------EAEEGKIEIDGIDIST 74 (207)
T ss_pred EEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCeEEECCEEhHH
Confidence 456889999975 36999999999 99999999999999999999999999 9999999999987654
Q ss_pred cccccCCCcceeeeEEEEeccCCC---cccCCc----ccchHH-HHhCChhHHhhhchhHHhhcCccccccccccccccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTP----GFNQPS-LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dtp----g~~~~~-l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~ 283 (391)
.+... ..+.+++++++... .+.++- .+.... ...++ .+..+. .|||||+||++||+|+ +
T Consensus 75 ~~~~~-----~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~---~LS~G~~qrv~laral-~ 141 (207)
T cd03369 75 IPLED-----LRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----VSEGGL---NLSQGQRQLLCLARAL-L 141 (207)
T ss_pred CCHHH-----HHhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----ccCCCC---cCCHHHHHHHHHHHHH-h
Confidence 32211 23457777776321 111110 011110 11111 233444 8999999999999999 9
Q ss_pred CCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 284 GEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 284 ~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
.+|+++|+| |+.....+.++|.++.
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 172 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEF 172 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999 7888889999998874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-21 Score=170.02 Aligned_cols=127 Identities=28% Similarity=0.333 Sum_probs=99.0
Q ss_pred CeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|. +..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.+++.
T Consensus 3 ~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~~~------- 63 (166)
T cd03223 3 LENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW------------PWGSGRIGMPEG------- 63 (166)
T ss_pred EEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCC-------
Confidence 477888885 457999999999 99999999999999999999999999 899999998652
Q ss_pred ccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec--
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-- 292 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-- 292 (391)
+.+++++++.. +. +.-....+. +. .+. .|||||+||++||+|+ +.+|+++++|
T Consensus 64 ---------~~i~~~~q~~~--~~--~~tv~~nl~-~~-------~~~---~LS~G~~~rv~laral-~~~p~~lllDEP 118 (166)
T cd03223 64 ---------EDLLFLPQRPY--LP--LGTLREQLI-YP-------WDD---VLSGGEQQRLAFARLL-LHKPKFVFLDEA 118 (166)
T ss_pred ---------ceEEEECCCCc--cc--cccHHHHhh-cc-------CCC---CCCHHHHHHHHHHHHH-HcCCCEEEEECC
Confidence 34556655422 10 111111111 00 344 8999999999999999 9999999999
Q ss_pred ----CHHHHHHHHHHHHHH
Q 016339 293 ----DWERYQYYFQLLDEI 307 (391)
Q Consensus 293 ----D~~~~~~~~~ll~el 307 (391)
|+.....+.+++.++
T Consensus 119 t~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 119 TSALDEESEDRLYQLLKEL 137 (166)
T ss_pred ccccCHHHHHHHHHHHHHh
Confidence 888888888888775
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-21 Score=183.05 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=114.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+..+... .|++|+|+++|.++....
T Consensus 20 l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 20 MRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDG-------CRVTGKITLDGEDIYDPR 92 (267)
T ss_pred EEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccC-------CCCceEEEECCEECcccc
Confidence 45688999998888999999999 9999999999999999999999999821000 148999999998764321
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------cc----------chHHHHhCChhH----HhhhchhHHhhcCc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF----------NQPSLLKVTKQS----LAQTFPEIKEMLKA 269 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~----------~~~~l~~~~~~~----l~~~~p~~~~~LSg 269 (391)
.... ...+.++++++....+ +.++- +. ....+..+++.. ..+..+. .|||
T Consensus 93 ~~~~---~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LSg 166 (267)
T PRK14235 93 LDVV---ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGT---GLSG 166 (267)
T ss_pred cchH---HHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcc---cCCH
Confidence 1100 1234577777763321 11110 00 011122233321 2233344 8999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 167 Gq~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~ 211 (267)
T PRK14235 167 GQQQRLCIARAI-AVSPEVILMDEPCSALDPIATAKVEELIDELRQ 211 (267)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc
Confidence 999999999999 9999999999 88999999999999864
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-21 Score=210.34 Aligned_cols=160 Identities=18% Similarity=0.268 Sum_probs=124.4
Q ss_pred hcCCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 134 TWGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 134 ~~g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+.|++|.++|... .+|+++||.+ .|++++|||||||||||++++|.+++ +|++|+|.++|.++
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy------------dP~~G~V~idG~di 417 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY------------DPTSGEVLIDGEDI 417 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc------------CCCCceEEEcCccc
Confidence 45689999999765 5899999999 89999999999999999999999999 99999999999998
Q ss_pred cccccccCCCcceeeeEEEEecc---CCCcccCC-----cccchHHH----HhCChhHHhhhchhHH--------hhcCc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLS---GGGYLADT-----PGFNQPSL----LKVTKQSLAQTFPEIK--------EMLKA 269 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt-----pg~~~~~l----~~~~~~~l~~~~p~~~--------~~LSg 269 (391)
..+..+. .+..++++.|+ +...+.++ |......+ ......++...+|... .+|||
T Consensus 418 ~~~~~~~-----lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 418 RNLNLKW-----LRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred hhcchHH-----HHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 7665432 45677888887 33333333 33332222 2223344444444422 37999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
|||||++|||++ +.+|+++++| |++....+.+.|+......
T Consensus 493 GQKQRIAIARal-v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~gr 539 (1228)
T KOG0055|consen 493 GQKQRIAIARAL-VRNPKILLLDEATSALDAESERVVQEALDKASKGR 539 (1228)
T ss_pred HHHHHHHHHHHH-HhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCC
Confidence 999999999999 9999999999 9999999999998876543
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-21 Score=181.00 Aligned_cols=135 Identities=17% Similarity=0.204 Sum_probs=101.9
Q ss_pred hHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEE
Q 016339 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (391)
Q Consensus 150 L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~ 228 (391)
++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...... ..+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~----------~~~ 58 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA------------QPTSGGVILEGKQITEPGPD----------RMV 58 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCChh----------heE
Confidence 46788999 89999999999999999999999999 99999999999876432111 123
Q ss_pred EeccCCC----cccCC---------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCc
Q 016339 229 LPLSGGG----YLADT---------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287 (391)
Q Consensus 229 v~~~~~~----~l~Dt---------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~ 287 (391)
+++.... .+.++ ++. ....+..+++....+..+. .|||||+||++||+|+ +.+|+
T Consensus 59 v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrv~la~al-~~~p~ 134 (230)
T TIGR01184 59 VFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG---QLSGGMKQRVAIARAL-SIRPK 134 (230)
T ss_pred EecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChh---hCCHHHHHHHHHHHHH-HcCCC
Confidence 3333211 11111 011 1223445566666677777 9999999999999999 99999
Q ss_pred EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 288 CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 288 ~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++|+| |+.....+.++|.++.++
T Consensus 135 lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 163 (230)
T TIGR01184 135 VLLLDEPFGALDALTRGNLQEELMQIWEE 163 (230)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 99999 889999999999998654
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-21 Score=198.05 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=116.6
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+.
T Consensus 6 ~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 6 SFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY------------QPDAGSILIDGQEMRFAST 73 (501)
T ss_pred EEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEECCCCCH
Confidence 4578899998888999999999 89999999999999999999999999 9999999999987643211
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc---------cc---------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP---------GF---------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp---------g~---------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.. ...+.++++++....+ +.++- +. ....+..+++....+..+. .|||||+
T Consensus 74 ~~----~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~ 146 (501)
T PRK11288 74 TA----ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK---YLSIGQR 146 (501)
T ss_pred HH----HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh---hCCHHHH
Confidence 10 1224567777653211 11110 10 1112334444444455666 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+++ +.+|+++|+| |+.....+.++|.++.++
T Consensus 147 qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 189 (501)
T PRK11288 147 QMVEIAKAL-ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE 189 (501)
T ss_pred HHHHHHHHH-HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999 9999999999 889999999999998643
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-20 Score=177.33 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=109.1
Q ss_pred CeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 137 YEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 137 ~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
++++.++|++ ..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~ 70 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY------------DPTSGEILLDGVDIRDL 70 (238)
T ss_pred EEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC------------CCCCCEEEECCEehhhc
Confidence 4778888864 35899999999 89999999999999999999999999 99999999999776433
Q ss_pred ccccCCCcceeeeEEEEeccCCC---cccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... ..+.++++++.... .+.++ +.... ..+...++.++.+.+|. ....|||||+
T Consensus 71 ~~~~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 145 (238)
T cd03249 71 NLRW-----LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQK 145 (238)
T ss_pred CHHH-----HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHH
Confidence 2211 12346666655211 11111 00000 11112233333222211 1138999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||+|+ +.+|+++|+| |+.....+.++|.++.
T Consensus 146 qrv~la~al-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 186 (238)
T cd03249 146 QRIAIARAL-LRNPKILLLDEATSALDAESEKLVQEALDRAM 186 (238)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 999999999 9999999999 8899999999999875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-21 Score=187.63 Aligned_cols=160 Identities=16% Similarity=0.230 Sum_probs=114.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+..+.. ..|++|+|+++|.++...+.
T Consensus 41 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~-------~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 41 EARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLID-------AARVEGELTFRGKNVYDADV 113 (285)
T ss_pred EEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCccc-------CCCCceEEEECCEEcccccc
Confidence 4578899998888999999999 999999999999999999999999981000 01689999999987643221
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCcc-------c-------chHHHHhCCh----hHHhhhchhHHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTPG-------F-------NQPSLLKVTK----QSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg-------~-------~~~~l~~~~~----~~l~~~~p~~~~~LSgGq~q 273 (391)
.. ....+.++++++....+ +.++.. . ....+..+++ ....+..+. .|||||+|
T Consensus 114 ~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~---~LSgGe~q 187 (285)
T PRK14254 114 DP---VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGL---DLSGGQQQ 187 (285)
T ss_pred ch---HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcc---cCCHHHHH
Confidence 11 01235677887763321 111100 0 0111222332 123445555 89999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 188 rv~LAraL-~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~ 228 (285)
T PRK14254 188 RLCIARAI-APDPEVILMDEPASALDPVATSKIEDLIEELAE 228 (285)
T ss_pred HHHHHHHH-HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 88999999999999865
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.8e-21 Score=201.05 Aligned_cols=156 Identities=19% Similarity=0.277 Sum_probs=122.4
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|.+ ..+++++|+.+ +|++++|+|+||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~------------~~~~G~I~i~g~~i~~ 398 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY------------EPDSGQILLDGHDLAD 398 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc------------CCCCCeEEECCEeHHh
Confidence 557899999964 46899999999 89999999999999999999999999 9999999999998876
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC-----c-ccchH----HHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----P-GFNQP----SLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----p-g~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
++... ....+++++|+. .+.+.++ + ...+. .+..+++.+....+|. ....||||
T Consensus 399 ~~~~~-----~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 399 YTLAS-----LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred cCHHH-----HHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 65432 456788888873 3333332 1 23222 3445566665555542 22469999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|+||++||||+ +.+|+++|+| |....+.+.+.|.++.
T Consensus 474 qrQRiaLARal-l~~~~illLDEpts~LD~~~~~~i~~~L~~~~ 516 (571)
T TIGR02203 474 QRQRLAIARAL-LKDAPILILDEATSALDNESERLVQAALERLM 516 (571)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 7888888888887764
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-20 Score=164.38 Aligned_cols=107 Identities=22% Similarity=0.291 Sum_probs=95.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~~~-------- 62 (144)
T cd03221 3 LENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL------------EPDEGIVTWGST-------- 62 (144)
T ss_pred EEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCceEEEECCe--------
Confidence 467888998778999999999 89999999999999999999999999 999999999873
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
..++++++ ||+||+||++||+|+ +.+|+++++|
T Consensus 63 --------~~i~~~~~-----------------------------------lS~G~~~rv~laral-~~~p~illlDEP~ 98 (144)
T cd03221 63 --------VKIGYFEQ-----------------------------------LSGGEKMRLALAKLL-LENPNLLLLDEPT 98 (144)
T ss_pred --------EEEEEEcc-----------------------------------CCHHHHHHHHHHHHH-hcCCCEEEEeCCc
Confidence 23445443 999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEI 307 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el 307 (391)
|+.....+.+++.++
T Consensus 99 ~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 99 NHLDLESIEALEEALKEY 116 (144)
T ss_pred cCCCHHHHHHHHHHHHHc
Confidence 788888888888775
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-21 Score=181.88 Aligned_cols=160 Identities=16% Similarity=0.237 Sum_probs=112.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+..+.. ..|++|+|+++|.++...+.
T Consensus 6 ~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 6 KLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVP-------SARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCC-------CCCCceEEEECCEEcccccC
Confidence 4578999998888999999999 999999999999999999999999971000 01368999999987643221
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------cc-c--------hHHHHhCChh----HHhhhchhHHhhcCcc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF-N--------QPSLLKVTKQ----SLAQTFPEIKEMLKAN 270 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~-~--------~~~l~~~~~~----~l~~~~p~~~~~LSgG 270 (391)
.. ....+.++++++....+ +.++- +. . ...+..+++. ...+..+. .||||
T Consensus 79 ~~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~G 152 (252)
T PRK14256 79 DP---VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAM---ELSGG 152 (252)
T ss_pred Ch---HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcC---cCCHH
Confidence 11 01245677887763321 11110 10 0 1111222321 12233344 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 153 ~~qrl~laral-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14256 153 QQQRLCIARTI-AVKPEVILMDEPASALDPISTLKIEELIEELKE 196 (252)
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 88899999999999864
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=179.95 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=113.0
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|++ ..++++++|.+ +|++++|+|+||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 20 i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~i~g~~i~~ 87 (257)
T cd03288 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV------------DIFDGKIVIDGIDISK 87 (257)
T ss_pred EEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc------------CCCCCeEEECCEEhhh
Confidence 456889999976 56999999999 99999999999999999999999999 9999999999987654
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCC--cc--cc----hHHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADT--PG--FN----QPSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt--pg--~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
.+... ..+.++++++....+ +.++ +. .. ...+...+.....+.+|. ....||+||+
T Consensus 88 ~~~~~-----~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~ 162 (257)
T cd03288 88 LPLHT-----LRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162 (257)
T ss_pred CCHHH-----HhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence 33211 234566666653211 1111 10 01 111222334444444431 1137999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||+|+ +.+|+++|+| |+.....+.+++.++.
T Consensus 163 qrl~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~ 203 (257)
T cd03288 163 QLFCLARAF-VRKSSILIMDEATASIDMATENILQKVVMTAF 203 (257)
T ss_pred HHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc
Confidence 999999999 9999999999 7888888889888764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-21 Score=183.70 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=111.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+..+.. ..|++|+|.++|.++.....
T Consensus 12 ~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 12 RTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIP-------GFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccC-------CCCCceEEEECCEEcccccc
Confidence 4578899998888999999999 999999999999999999999999872100 01479999999987642111
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc-------hHHHHhCChh----HHhhhchhHHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN-------QPSLLKVTKQ----SLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~-------~~~l~~~~~~----~l~~~~p~~~~~LSgGq~q 273 (391)
.. ....+.++++++....+ +.++- ++. ...+..+++. ...+..+. .|||||+|
T Consensus 85 ~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LSgGq~q 158 (264)
T PRK14243 85 DP---VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGL---SLSGGQQQ 158 (264)
T ss_pred Ch---HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcc---cCCHHHHH
Confidence 10 01234577777753211 11110 000 0011122221 12333444 79999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 159 rv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 199 (264)
T PRK14243 159 RLCIARAI-AVQPEVILMDEPCSALDPISTLRIEELMHELKE 199 (264)
T ss_pred HHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 88999999999999865
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-20 Score=183.18 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=113.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC--CCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~--p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+... .+ |++|+|.++|.++..
T Consensus 40 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~---------~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 40 VVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDL---------IPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---------CCCCCCceEEEECCEEhhh
Confidence 34678899998778999999999 9999999999999999999999998510 01 589999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc---------hHHHHhCCh----hHHhhhchhHHhhcC
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN---------QPSLLKVTK----QSLAQTFPEIKEMLK 268 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~---------~~~l~~~~~----~~l~~~~p~~~~~LS 268 (391)
..... ....+.++++++....+ +.++- +.. ...+..+++ .+..+..+. .||
T Consensus 111 ~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LS 184 (286)
T PRK14275 111 KFTDE---VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL---GLS 184 (286)
T ss_pred cccch---HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChh---hCC
Confidence 21110 01234577777763321 11110 000 011122222 233444555 899
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 185 gGq~qrv~LAraL-~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~ 230 (286)
T PRK14275 185 GGQQQRLCVARTL-AVEPEILLLDEPTSALDPKATAKIEDLIQELRG 230 (286)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999 88999999999998864
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-20 Score=200.48 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=119.2
Q ss_pred CeeEEEEcCC-----------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCccee
Q 016339 137 YEPLFCSVES-----------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (391)
Q Consensus 137 ~~~v~~s~~~-----------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~ 204 (391)
+++++++|+. ..++++|||.+ +|++++|+||||||||||+++|+|+. +|++|+|++
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~------------~p~~G~I~~ 383 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV------------ESQGGEIIF 383 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCcEEEE
Confidence 4567888852 36899999999 99999999999999999999999999 999999999
Q ss_pred cCccccccccccCCCcceeeeEEEEeccCC--Cc----ccCC-------ccc---------chHHHHhCChh-HHhhhch
Q 016339 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGG--GY----LADT-------PGF---------NQPSLLKVTKQ-SLAQTFP 261 (391)
Q Consensus 205 ~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~--~~----l~Dt-------pg~---------~~~~l~~~~~~-~l~~~~p 261 (391)
+|.++...+... .+...+.+++++|+.. .+ +.++ .+. ....+..+++. ...+.+|
T Consensus 384 ~g~~i~~~~~~~--~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 461 (623)
T PRK10261 384 NGQRIDTLSPGK--LQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461 (623)
T ss_pred CCEECCcCCHHH--HHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc
Confidence 998775433210 0012346888888631 11 1111 011 11234456663 5677788
Q ss_pred hHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 262 ~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
. +|||||+||++||+|+ +.+|+++|+| |+.....++++|.++.++
T Consensus 462 ~---~LSgGqrQRv~iAraL-~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~ 512 (623)
T PRK10261 462 H---EFSGGQRQRICIARAL-ALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512 (623)
T ss_pred c---cCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 8 9999999999999999 9999999999 899999999999999765
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-21 Score=181.33 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=112.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC-----CCCCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~-----p~~G~I~~~g~~v 209 (391)
.++++.++|+...+++++||.+ +|++++|+||||||||||+++|+|+. + |++|+|.++|.++
T Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~p~~~~~G~v~i~g~~~ 73 (251)
T PRK14251 6 SAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN------------DDIENIKITGEIKFEGQNI 73 (251)
T ss_pred EEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc------------ccccCCCcceEEEECCEEc
Confidence 4578999998888999999999 89999999999999999999999998 4 4799999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc---------hHHHHhCCh----hHHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN---------QPSLLKVTK----QSLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~---------~~~l~~~~~----~~l~~~~p~~~~~ 266 (391)
....... ....+.++++++....+ +.++- +.. ...+..+++ ....+..+. .
T Consensus 74 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~ 147 (251)
T PRK14251 74 YGSKMDL---VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQ---A 147 (251)
T ss_pred ccccchH---HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChh---h
Confidence 4311100 01234577777663321 11110 000 011222232 122344455 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 148 LS~Gq~qr~~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 195 (251)
T PRK14251 148 FSGGQQQRICIARAL-AVRPKVVLLDEPTSALDPISSSEIEETLMELKH 195 (251)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc
Confidence 999999999999999 9999999999 88999999999998854
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-21 Score=180.76 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=113.0
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-----CCCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-----~~G~I~~~g~~v 209 (391)
.++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+. +| ++|+|.++|.++
T Consensus 6 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 6 ESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMN------------DLISNVKIEGEVLLDGKNI 73 (251)
T ss_pred EEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhcc------------CcccCCCCccEEEECCEec
Confidence 3578889998888999999999 99999999999999999999999997 43 799999999877
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc---ccCCc-------cc-c--------hHHHHhCCh----hHHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF-N--------QPSLLKVTK----QSLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~-~--------~~~l~~~~~----~~l~~~~p~~~~~ 266 (391)
...+... ....+.+++++++...+ +.++. +. . ...+..+++ ....+..+. .
T Consensus 74 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~ 147 (251)
T PRK14270 74 YDKDVDV---VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSAL---K 147 (251)
T ss_pred ccccccH---HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcc---c
Confidence 4321110 01234577777763321 11110 00 0 011222222 122344455 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||+||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 148 LS~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~ 195 (251)
T PRK14270 148 LSGGQQQRLCIARTI-AVKPDVILMDEPTSALDPISTLKIEDLMVELKK 195 (251)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999 88999999999999865
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-21 Score=178.19 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=110.6
Q ss_pred CeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC---CCCCcceecCcc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQR 208 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~---p~~G~I~~~g~~ 208 (391)
++++.+.|.+ ..++++++|++ +|++++|+||||||||||+++|+|+. + |++|+|+++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~------------~~~~~~~G~i~~~g~~ 73 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV------------EGGGTTSGQILFNGQP 73 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc------------CCCCCCceEEEECCEE
Confidence 5677777754 57999999999 89999999999999999999999998 6 899999999976
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCc----ccCC---------cc-cc--------hH-HHHhCChhHHhhhchhHHh
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY----LADT---------PG-FN--------QP-SLLKVTKQSLAQTFPEIKE 265 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt---------pg-~~--------~~-~l~~~~~~~l~~~~p~~~~ 265 (391)
+... ...+.++++++....+ +.++ +. .. .. .+..+++..+.+..+.
T Consensus 74 ~~~~--------~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (226)
T cd03234 74 RKPD--------QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK--- 142 (226)
T ss_pred CChH--------HhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccccc---
Confidence 5310 1234566666553211 1110 00 00 01 2223333344444455
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.||+||+||++||+|+ +.+|+++|+| |+.....+.+++.++.+.
T Consensus 143 ~LS~G~~qrl~laral-~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~ 192 (226)
T cd03234 143 GISGGERRRVSIAVQL-LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR 192 (226)
T ss_pred CcCHHHHHHHHHHHHH-HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 8999999999999999 9999999999 889999999999998653
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-20 Score=171.20 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=106.0
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.++++.++|++ ..+++++||++ +|++++|+||||||||||+++|+|+.. ..|++|+|.++|.++.
T Consensus 5 ~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----------~~~~~G~i~~~g~~~~ 74 (192)
T cd03232 5 TWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT----------AGVITGEILINGRPLD 74 (192)
T ss_pred EEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc----------CCCcceEEEECCEehH
Confidence 35788889964 56999999999 899999999999999999999999751 0489999999998764
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEE
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~ll 290 (391)
. ...+.++++++....+ ...... ..+. .... ...|||||+||++||+|+ +.+|++++
T Consensus 75 ---~------~~~~~i~~~~q~~~~~--~~~tv~-~~l~---~~~~-------~~~LSgGe~qrv~la~al-~~~p~vll 131 (192)
T cd03232 75 ---K------NFQRSTGYVEQQDVHS--PNLTVR-EALR---FSAL-------LRGLSVEQRKRLTIGVEL-AAKPSILF 131 (192)
T ss_pred ---H------HhhhceEEecccCccc--cCCcHH-HHHH---HHHH-------HhcCCHHHhHHHHHHHHH-hcCCcEEE
Confidence 1 1234577777653211 110000 1111 0000 018999999999999999 99999999
Q ss_pred ec------CHHHHHHHHHHHHHHHHH
Q 016339 291 KG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 291 lD------D~~~~~~~~~ll~el~~~ 310 (391)
+| |+.....+.+++.++.+.
T Consensus 132 lDEP~~~LD~~~~~~l~~~l~~~~~~ 157 (192)
T cd03232 132 LDEPTSGLDSQAAYNIVRFLKKLADS 157 (192)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHc
Confidence 99 889999999999987653
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-20 Score=180.81 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=113.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+..+... .|++|+|.++|.++....
T Consensus 22 l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~-------~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-------YRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred EEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCC-------CCCceEEEECCEEccccc
Confidence 45688999999889999999999 9999999999999999999999999821100 157999999997764321
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCcc--------cch--------HHHHhCChhH----HhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTPG--------FNQ--------PSLLKVTKQS----LAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg--------~~~--------~~l~~~~~~~----l~~~~p~~~~~LSgG 270 (391)
.. ......++++++....+ +.++.. ... ..+..+++.. ..+..+. .||||
T Consensus 95 ~~----~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~---~LSgG 167 (276)
T PRK14271 95 DV----LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPF---RLSGG 167 (276)
T ss_pred hh----HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcc---cCCHH
Confidence 11 01234577777653321 111100 000 1112223221 1233344 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 168 q~qrl~LAral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 211 (276)
T PRK14271 168 QQQLLCLARTL-AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD 211 (276)
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88899999999999865
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-21 Score=200.09 Aligned_cols=160 Identities=19% Similarity=0.241 Sum_probs=115.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc---ccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ---RVGEV 212 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~---~v~~v 212 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+.. +.|++|+|.+++. .++.+
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~----------~~p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQ----------YEPTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc----------CCCCceEEEEecccccccccc
Confidence 478899998888999999999 899999999999999999999999850 0488999998631 11111
Q ss_pred cccc---------------------CCC----cceeeeEEEEecc-CCCc----ccCC-------ccc--------chHH
Q 016339 213 STKS---------------------GRG----KHTTRHVSLLPLS-GGGY----LADT-------PGF--------NQPS 247 (391)
Q Consensus 213 ~~~~---------------------~~~----~~ttr~i~~v~~~-~~~~----l~Dt-------pg~--------~~~~ 247 (391)
++.. ... ....+.++++++. ...+ +.++ .+. ....
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDL 152 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1000 000 0112457788774 2211 1111 011 1123
Q ss_pred HHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 248 LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 248 l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+..+++.++.+..+. .|||||+||++||+|+ +.+|+++|+| |+.....++++|.++.++
T Consensus 153 l~~~gl~~~~~~~~~---~LSgGq~qrv~iA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 217 (520)
T TIGR03269 153 IEMVQLSHRITHIAR---DLSGGEKQRVVLARQL-AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA 217 (520)
T ss_pred HHHcCChhhhhcCcc---cCCHHHHHHHHHHHHH-hcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 445666666677777 9999999999999999 9999999999 899999999999998654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-20 Score=179.40 Aligned_cols=142 Identities=16% Similarity=0.189 Sum_probs=105.2
Q ss_pred chHHHhhcc------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcce
Q 016339 149 GLDSLLQRL------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (391)
Q Consensus 149 ~L~~ls~~i------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~t 222 (391)
.++++++.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|..++.+++........
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~------------~p~~G~i~~~g~~i~~~~q~~~~~~~~ 76 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL------------KPDEGDIEIELDTVSYKPQYIKADYEG 76 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC------------cCCCCeEEECCceEEEecccccCCCCC
Confidence 445555555 69999999999999999999999999 999999999998787777654322111
Q ss_pred e--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CH
Q 016339 223 T--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DW 294 (391)
Q Consensus 223 t--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~ 294 (391)
| .++.+.. .. ....+......+..+++....+..+. .|||||+||++||+|+ +.+|+++|+| |+
T Consensus 77 tv~e~l~~~~---~~-~~~~~~~~~~~l~~l~l~~~~~~~~~---~LSgGe~qrv~iaraL-~~~p~llllDEPt~~LD~ 148 (246)
T cd03237 77 TVRDLLSSIT---KD-FYTHPYFKTEIAKPLQIEQILDREVP---ELSGGELQRVAIAACL-SKDADIYLLDEPSAYLDV 148 (246)
T ss_pred CHHHHHHHHh---hh-ccccHHHHHHHHHHcCCHHHhhCChh---hCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCH
Confidence 1 1110000 00 00111222344556777777777777 9999999999999999 9999999999 88
Q ss_pred HHHHHHHHHHHHHHHH
Q 016339 295 ERYQYYFQLLDEIRIR 310 (391)
Q Consensus 295 ~~~~~~~~ll~el~~~ 310 (391)
.....+.++|.++..+
T Consensus 149 ~~~~~l~~~l~~~~~~ 164 (246)
T cd03237 149 EQRLMASKVIRRFAEN 164 (246)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-21 Score=205.81 Aligned_cols=150 Identities=18% Similarity=0.251 Sum_probs=115.7
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|.+ ..+|+++||++ +|++++|+||||||||||+|+|+|++ +|++|+|.++|.++.
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~------------~p~~G~I~idg~~i~ 546 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY------------QPTGGQVLLDGVPLV 546 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc------------CCCCCEEEECCEEHH
Confidence 567899999964 46999999999 99999999999999999999999999 999999999999887
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-----cccchH----HHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQP----SLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
...... ..+++++++|+. .+.+.|+ +...+. .+...++.+....+|+ -...||||
T Consensus 547 ~~~~~~-----lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 547 QYDHHY-----LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred hcCHHH-----HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 665432 456788888873 3334333 222222 2334455555555443 12379999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQ 302 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ 302 (391)
|+||++||||+ +.+|+++|+| |++....+.+
T Consensus 622 QkQRlalARAL-l~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 622 QKQRIAIARAL-VRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred HHHHHHHHHHH-hcCCCEEEEEccccccCHHHHHHHHH
Confidence 99999999999 9999999999 6776666655
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-20 Score=177.60 Aligned_cols=158 Identities=15% Similarity=0.243 Sum_probs=112.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC---CCCcceecCcccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p---~~G~I~~~g~~v~ 210 (391)
+.+++++++|++..++++++|.+ +|++++|+||||||||||+++|+|+..+ .| ++|+|.++|.++.
T Consensus 7 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----------~~~~~~~G~i~~~g~~~~ 76 (253)
T PRK14261 7 LSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL----------IPGCRITGDILYNGENIM 76 (253)
T ss_pred EEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC----------CCCCCcceEEEECCEEcc
Confidence 34678899998888999999999 8999999999999999999999998621 12 5899999998775
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc---ccCCccc--------c--------hHHHHhCCh----hHHhhhchhHHhhc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGF--------N--------QPSLLKVTK----QSLAQTFPEIKEML 267 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg~--------~--------~~~l~~~~~----~~l~~~~p~~~~~L 267 (391)
..+... ....+.++++++....+ +.++-.+ . ...+..+++ ....+..+. .|
T Consensus 77 ~~~~~~---~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~L 150 (253)
T PRK14261 77 DSGADV---VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL---SL 150 (253)
T ss_pred ccccch---hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChh---hC
Confidence 432110 01235577777764322 1111000 0 001111111 112233344 89
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||+||++||+|+ +.+|+++|+| |+.....+.+++.++.+
T Consensus 151 S~G~~qrv~laral-~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14261 151 SGGQQQRLCIARTL-AVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197 (253)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh
Confidence 99999999999999 9999999999 88999999999998865
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-20 Score=175.97 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=111.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+..+.. ..|++|+|+++|.++....
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~-------~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP-------SVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred EEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC-------CCCCceEEEECCEEccccc
Confidence 34688999998888999999999 999999999999999999999999861000 0126999999998764311
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc-----h----HHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN-----Q----PSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~-----~----~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
... ......++++++....+ +.++- +.. . ..+..+++ ....+..+. .||||
T Consensus 77 ~~~---~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LS~G 150 (250)
T PRK14240 77 IDV---NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSAL---GLSGG 150 (250)
T ss_pred cch---HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCC---CCCHH
Confidence 000 01234577777763321 11110 000 0 00111221 122334444 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+++ +.+|+++|+| |+.....+.++|.++..
T Consensus 151 ~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14240 151 QQQRLCIARAL-AVEPEVLLMDEPTSALDPISTLKIEELIQELKK 194 (250)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88999999999998853
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-21 Score=182.34 Aligned_cols=161 Identities=13% Similarity=0.214 Sum_probs=114.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|+...+++++||++ +|++++|+||||||||||+++|+|+..+... .|++|+|.++|.++....
T Consensus 21 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 21 LSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDI-------ARVTGQILYRGIDINRKE 93 (267)
T ss_pred EEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCC-------CCcceEEEECCEEccccc
Confidence 45688999998888999999999 9999999999999999999999999821000 158999999998764321
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc-h--------HHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN-Q--------PSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~-~--------~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
... ....+.++++++....+ +.++- +.. . ..+..+++ ....+..+. .||||
T Consensus 94 ~~~---~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~---~LS~G 167 (267)
T PRK14237 94 INV---YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSAL---TLSGG 167 (267)
T ss_pred CCh---HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcc---cCCHH
Confidence 100 01234677777763221 11110 110 0 01222222 123445555 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 168 ~~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 211 (267)
T PRK14237 168 QQQRLCIARAI-AVKPDILLMDEPASALDPISTMQLEETMFELKK 211 (267)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88899999999998853
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-20 Score=174.92 Aligned_cols=157 Identities=17% Similarity=0.224 Sum_probs=112.2
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC---CCCcceecCccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGE 211 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p---~~G~I~~~g~~v~~ 211 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+... .| ++|+|+++|.++..
T Consensus 7 ~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----------~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 7 QVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL----------NPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred EEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccccc----------CCCCCccceEEECCEECcC
Confidence 4688999998888999999999 9999999999999999999999998510 35 58999999987642
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc-hH--------HHHhCCh----hHHhhhchhHHhhcC
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN-QP--------SLLKVTK----QSLAQTFPEIKEMLK 268 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~-~~--------~l~~~~~----~~l~~~~p~~~~~LS 268 (391)
..... ....+.++++++....+ +.++- +.. .. .+..+++ ....+..+. .||
T Consensus 77 ~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS 150 (252)
T PRK14239 77 PRTDT---VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSAL---GLS 150 (252)
T ss_pred cccch---HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcc---cCC
Confidence 21100 11234577877764321 11110 000 00 1112221 122344444 899
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 151 ~G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14239 151 GGQQQRVCIARVL-ATSPKIILLDEPTSALDPISAGKIEETLLGLKD 196 (252)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh
Confidence 9999999999999 9999999999 88999999999999854
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-20 Score=198.86 Aligned_cols=156 Identities=19% Similarity=0.291 Sum_probs=119.4
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|.. ..+|+++|+++ +|+.++|+|+||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~------------~p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY------------DPQSGRILLDGVDLR 405 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc------------CCCCCEEEECCEEHH
Confidence 557889999964 45899999999 99999999999999999999999999 999999999998876
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
...... ..+.+++++|+. .+.+.|+ |.... ..+..+++.+..+.+|. ....||||
T Consensus 406 ~~~~~~-----~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 406 QLDPAE-----LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred hcCHHH-----HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 654432 345678888873 3333322 22222 22334455555555542 22469999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|+||+++|||+ +.+|+++|+| |+...+.+.+.+.++.
T Consensus 481 q~Qrl~laRal-~~~~~ililDEpts~lD~~~~~~i~~~l~~~~ 523 (576)
T TIGR02204 481 QRQRIAIARAI-LKDAPILLLDEATSALDAESEQLVQQALETLM 523 (576)
T ss_pred HHHHHHHHHHH-HhCCCeEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 7788888888887764
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-20 Score=197.11 Aligned_cols=156 Identities=14% Similarity=0.131 Sum_probs=115.8
Q ss_pred hcCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 134 TWGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 134 ~~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
.+.+++++++|.+ ..+++++|+.+ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~------------~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY------------QPQSGEILLDGKPVTA 389 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEECCC
Confidence 4567899999964 45999999999 89999999999999999999999999 9999999999998765
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC-cccchH----HHHhCChhHHhhhchhH---HhhcCcccccccccccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT-PGFNQP----SLLKVTKQSLAQTFPEI---KEMLKANEPAKCSFNNC 280 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-pg~~~~----~l~~~~~~~l~~~~p~~---~~~LSgGq~qr~~iara 280 (391)
.+... ..+++++++|+. .+.+.++ +..... .+..++....... ++- ...|||||+||++||||
T Consensus 390 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 390 EQPED-----YRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLEL-EDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred CCHHH-----HhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhc-cccCCCCCCCCHHHHHHHHHHHH
Confidence 54321 346788888873 2334343 111111 1223333222111 111 24799999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+ +.+|+++|+| |++....+.+.+.+..
T Consensus 464 l-~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 496 (547)
T PRK10522 464 L-AEERDILLLDEWAADQDPHFRREFYQVLLPLL 496 (547)
T ss_pred H-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 9 9999999999 7888888877776543
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-21 Score=167.04 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=107.7
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCccee
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~tt 223 (391)
++...|+++||.+ +|++++|.||||||||||+++++.+. .|++|+++|.|.+++...... .+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li------------sp~~G~l~f~Ge~vs~~~pea-----~R 76 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI------------SPTSGTLLFEGEDVSTLKPEA-----YR 76 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc------------CCCCceEEEcCccccccChHH-----HH
Confidence 5567899999999 99999999999999999999999999 999999999999887654421 22
Q ss_pred eeEEEEecc---CCCcccCCcccc-------------hHHHHhCChh-HHhhhchhHHhhcCcccccccccccccccCCC
Q 016339 224 RHVSLLPLS---GGGYLADTPGFN-------------QPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEP 286 (391)
Q Consensus 224 r~i~~v~~~---~~~~l~Dtpg~~-------------~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP 286 (391)
..++|+.|. +++.+.|+--|- ...+..+++. .++.+... .|||||+||.+++|-| ..-|
T Consensus 77 q~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it---~lSGGE~QriAliR~L-q~~P 152 (223)
T COG4619 77 QQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNIT---ELSGGEKQRIALIRNL-QFMP 152 (223)
T ss_pred HHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhh---hccchHHHHHHHHHHh-hcCC
Confidence 333333332 334444442221 1123333332 23444444 8999999999999999 9999
Q ss_pred cEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 287 GCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 287 ~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+++++| |+.+.+.+-+++...-..
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~~ 182 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRYVRE 182 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHHhhh
Confidence 999999 888889998888887643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-20 Score=206.82 Aligned_cols=159 Identities=18% Similarity=0.281 Sum_probs=123.3
Q ss_pred hcCCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 134 TWGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 134 ~~g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
++.|++|.|+|.+. .+++++|+.+ .|+++||||||||||||+|.+|-+++ +|++|.|.+||.++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY------------dp~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY------------DPDAGKVKIDGVDI 1054 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc------------CCCCCeEEECCccc
Confidence 46689999999654 5899999999 89999999999999999999999999 99999999999998
Q ss_pred cccccccCCCcceeeeEEEEeccC---CCcccCCc--c---cchH----HHHhCChhHHhhhchh--------HHhhcCc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTP--G---FNQP----SLLKVTKQSLAQTFPE--------IKEMLKA 269 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dtp--g---~~~~----~l~~~~~~~l~~~~p~--------~~~~LSg 269 (391)
..+.-+ |++++++++.|+. ++.+.++- | ..+. ++......++...+|+ ...+|||
T Consensus 1055 k~lnl~-----~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSG 1129 (1228)
T KOG0055|consen 1055 KDLNLK-----WLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSG 1129 (1228)
T ss_pred ccCCHH-----HHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCc
Confidence 776553 4778899998873 33344431 1 1111 1112222233333333 2348999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||+|||||+ +.+|+++++| |.++.+.+.+.|+.+...
T Consensus 1130 GQKQRIAIARAi-lRnPkILLLDEATSALDseSErvVQeALd~a~~g 1175 (1228)
T KOG0055|consen 1130 GQKQRIAIARAI-LRNPKILLLDEATSALDSESERVVQEALDRAMEG 1175 (1228)
T ss_pred hHHHHHHHHHHH-HcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcC
Confidence 999999999999 9999999999 888888899999887654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-20 Score=216.95 Aligned_cols=168 Identities=14% Similarity=0.127 Sum_probs=125.7
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCC-----------------------
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASD----------------------- 187 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~----------------------- 187 (391)
+.+++|+++|.+ ..+|+++||.+ +|+++|||||||||||||+++|+|++.|..
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccc
Confidence 567999999953 46999999999 899999999999999999999999995410
Q ss_pred -------------------cccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEecc---CCCcccCC-----
Q 016339 188 -------------------AADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS---GGGYLADT----- 240 (391)
Q Consensus 188 -------------------~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt----- 240 (391)
.........|++|+|.++|.++..+.... .++++++++|+ +.+.+.++
T Consensus 1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~-----lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKD-----LRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHH-----HHhhccEeCCCCccccccHHHHHhcCC
Confidence 00011122357999999999998776542 56778999988 33444443
Q ss_pred cccchHH----HHhCChhHHhhhchhH--------HhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHH
Q 016339 241 PGFNQPS----LLKVTKQSLAQTFPEI--------KEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQ 302 (391)
Q Consensus 241 pg~~~~~----l~~~~~~~l~~~~p~~--------~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ 302 (391)
|...+.. +...++.++...+|+- ...|||||+||++||||+ +.+|+++|+| |.+....+.+
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARAL-lr~p~ILLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARAL-LREPKILLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHH-hcCCCEEEEeCcccccCHHHHHHHHH
Confidence 2233222 3334555555555542 237999999999999999 9999999999 8889999999
Q ss_pred HHHHHH
Q 016339 303 LLDEIR 308 (391)
Q Consensus 303 ll~el~ 308 (391)
.|.++.
T Consensus 1400 ~L~~~~ 1405 (1466)
T PTZ00265 1400 TIVDIK 1405 (1466)
T ss_pred HHHHHh
Confidence 888874
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-20 Score=176.56 Aligned_cols=159 Identities=17% Similarity=0.149 Sum_probs=111.4
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+..+.. ..|++|+|.++|.++...+..
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~-------~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVP-------NCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred eeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCC-------CCCcceEEEECCEehHhcccc
Confidence 578889998888999999999 999999999999999999999999971000 015799999999876432211
Q ss_pred cCCCcceeeeEEEEeccCCCc---ccCCc-------cc----------chHHHHhCChhH----HhhhchhHHhhcCccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY---LADTP-------GF----------NQPSLLKVTKQS----LAQTFPEIKEMLKANE 271 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~----------~~~~l~~~~~~~----l~~~~p~~~~~LSgGq 271 (391)
. ....+.++++++....+ +.++- +. ....+..+++.. ..+..+. .|||||
T Consensus 81 ~---~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~Gq 154 (251)
T PRK14244 81 V---VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAF---ELSGGQ 154 (251)
T ss_pred h---HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChh---hCCHHH
Confidence 0 01234577777763221 11110 00 001122333321 2233444 899999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 155 ~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 197 (251)
T PRK14244 155 QQRLCIARAI-AVKPTMLLMDEPCSALDPVATNVIENLIQELKK 197 (251)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 78889999999998853
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-20 Score=177.15 Aligned_cols=158 Identities=11% Similarity=0.164 Sum_probs=111.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC--CCCcceecCcccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p--~~G~I~~~g~~v~~v 212 (391)
.++++.+.|++..+++++||.+ +|++++|+||||||||||+++|+|+.. ..+| ++|+|.++|.++...
T Consensus 5 ~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---------~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 5 DARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND---------LIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred EEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc---------ccCCCCCceEEEECCEecccc
Confidence 4578889998888999999999 999999999999999999999999730 0033 689999999876432
Q ss_pred ccccCCCcceeeeEEEEeccCCCc---ccCCc-------cc---------chHHHHhCChh----HHhhhchhHHhhcCc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF---------NQPSLLKVTKQ----SLAQTFPEIKEMLKA 269 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~---------~~~~l~~~~~~----~l~~~~p~~~~~LSg 269 (391)
+... ....+.++++++....+ +.++. +. ....+..+++. ...+..+. .|||
T Consensus 76 ~~~~---~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~ 149 (250)
T PRK14245 76 GVQV---DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAF---ALSG 149 (250)
T ss_pred cccH---HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcc---cCCH
Confidence 1100 11234577777763211 11110 00 01112223321 22334444 8999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 150 G~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14245 150 GQQQRLCIARAM-AVSPSVLLMDEPASALDPISTAKVEELIHELKK 194 (250)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 999999999999 9999999999 88999999999999853
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-20 Score=177.67 Aligned_cols=156 Identities=16% Similarity=0.197 Sum_probs=113.8
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-----CCCcceecCcc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-----~~G~I~~~g~~ 208 (391)
+.++++.++|++..++++++|.+ +|++++|+|+||||||||+++|+|+. +| ++|+|.++|.+
T Consensus 8 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~------------~~~~~~~~~G~i~~~g~~ 75 (259)
T PRK14260 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS------------ELEGPVKVEGVVDFFGQN 75 (259)
T ss_pred EEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------CcccCCccceEEEECCEe
Confidence 45688999998888999999999 99999999999999999999999998 43 58999999987
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCc---ccCCc-----------cc-----chHHHHhCCh----hHHhhhchhHHh
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-----------GF-----NQPSLLKVTK----QSLAQTFPEIKE 265 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-----------g~-----~~~~l~~~~~----~~l~~~~p~~~~ 265 (391)
+...+... ......++++++....+ +.++- .. ....+..+++ ....+..+.
T Consensus 76 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~--- 149 (259)
T PRK14260 76 IYDPRINI---NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSAL--- 149 (259)
T ss_pred ccccccch---HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcc---
Confidence 64311100 01234577777763321 11110 00 0011222222 223445555
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 150 ~LS~G~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (259)
T PRK14260 150 GLSGGQQQRLCIARAL-AIKPKVLLMDEPCSALDPIATMKVEELIHSLRS 198 (259)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999 9999999999 88899999999999864
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-20 Score=188.37 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=121.1
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.|++++++|.. +.+|+||||.+ +|+++|||||||+||||++++|.++. +..+|.|.|+|+++..+
T Consensus 538 i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff------------dv~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF------------DVNSGSITIDGQDIRNV 605 (790)
T ss_pred EEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh------------hccCceEEEcCchHHHH
Confidence 457899999965 57999999999 99999999999999999999999999 99999999999999877
Q ss_pred ccccCCCcceeeeEEEEecc---CCCcccCC-----cccchHHHH----hCChhHHhhhchhHH--------hhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLS---GGGYLADT-----PGFNQPSLL----KVTKQSLAQTFPEIK--------EMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt-----pg~~~~~l~----~~~~~~l~~~~p~~~--------~~LSgGq~ 272 (391)
.+.. .+.+++.+||+ ++..+..+ |+...+.+. ..++.+-.-.||+-. -.||||||
T Consensus 606 t~~S-----LRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEK 680 (790)
T KOG0056|consen 606 TQSS-----LRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEK 680 (790)
T ss_pred HHHH-----HHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcch
Confidence 6653 45667778877 22222222 444333221 123333334466533 27999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++|||++ +..|.++++| |-...+.+...|.++...
T Consensus 681 QRVAiARti-LK~P~iIlLDEATSALDT~tER~IQaaL~rlca~ 723 (790)
T KOG0056|consen 681 QRVAIARTI-LKAPSIILLDEATSALDTNTERAIQAALARLCAN 723 (790)
T ss_pred hhHHHHHHH-hcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcC
Confidence 999999999 9999999999 556777888888887654
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-20 Score=180.44 Aligned_cols=156 Identities=17% Similarity=0.248 Sum_probs=112.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC--C---CCCcceecCcc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQR 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~--p---~~G~I~~~g~~ 208 (391)
+.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. . | ++|+|+++|.+
T Consensus 13 l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~p~~~~~G~i~~~g~~ 80 (259)
T PRK14274 13 YQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI------------QMVPNVKLTGEMNYNGSN 80 (259)
T ss_pred EEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------cCCCCCCCceEEEECCEE
Confidence 45688999998888999999999 99999999999999999999999997 4 3 68999999987
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCc---ccCC-------ccc-c--------hHHHHhCChh----HHhhhchhHHh
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADT-------PGF-N--------QPSLLKVTKQ----SLAQTFPEIKE 265 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-------pg~-~--------~~~l~~~~~~----~l~~~~p~~~~ 265 (391)
+...+.. .....+.++++++....+ +.++ .+. . ...+..+++. ...+..+.
T Consensus 81 ~~~~~~~---~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~--- 154 (259)
T PRK14274 81 ILKGKVD---LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQAL--- 154 (259)
T ss_pred ccccccC---HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcc---
Confidence 6421100 001234677777763221 1111 000 0 0011122221 12333444
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+++ +.+|+++++| |+.....+.++|.++..
T Consensus 155 ~LS~Gq~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 203 (259)
T PRK14274 155 SLSGGQQQRLCIARAL-ATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203 (259)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999 9999999999 88899999999999864
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-20 Score=194.34 Aligned_cols=154 Identities=9% Similarity=0.126 Sum_probs=113.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC--CCCcceecCccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p--~~G~I~~~g~~v~~v~ 213 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +| ++|+|.++|.++...+
T Consensus 4 i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~------------~~~~~~G~i~~~g~~~~~~~ 71 (500)
T TIGR02633 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY------------PHGTWDGEIYWSGSPLKASN 71 (500)
T ss_pred EEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCeEEEECCEECCCCC
Confidence 478899998888999999999 89999999999999999999999998 65 7999999998764322
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc---------c--c--------chHHHHhCChhHHh-hhchhHHhhcCc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP---------G--F--------NQPSLLKVTKQSLA-QTFPEIKEMLKA 269 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp---------g--~--------~~~~l~~~~~~~l~-~~~p~~~~~LSg 269 (391)
... .....++++++....+ +.++- + . ....+..+++.... +..+. .|||
T Consensus 72 ~~~----~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSg 144 (500)
T TIGR02633 72 IRD----TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVG---DYGG 144 (500)
T ss_pred HHH----HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchh---hCCH
Confidence 110 0123466776653211 11100 0 0 01123334443322 33455 8999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++...
T Consensus 145 G~~qrv~iA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 190 (500)
T TIGR02633 145 GQQQLVEIAKAL-NKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190 (500)
T ss_pred HHHHHHHHHHHH-hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999 9999999999 899999999999998653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-20 Score=174.15 Aligned_cols=155 Identities=15% Similarity=0.229 Sum_probs=111.0
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-----CCCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-----~~G~I~~~g~~v 209 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .| ++|+|.++|.++
T Consensus 6 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~~~~~~G~i~~~g~~~ 73 (252)
T PRK14272 6 SAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH------------DLTPGARVTGRILLDGQDI 73 (252)
T ss_pred EEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCcCCCCceeEEECCEEc
Confidence 3578899998888999999999 99999999999999999999999998 54 389999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc----ccCCc-------cc-chH--------HHHhCCh----hHHhhhchhHHh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF-NQP--------SLLKVTK----QSLAQTFPEIKE 265 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~-~~~--------~l~~~~~----~~l~~~~p~~~~ 265 (391)
....... ......++++++....+ +.++- +. ... .+..++. ....+..+.
T Consensus 74 ~~~~~~~---~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~--- 147 (252)
T PRK14272 74 YGPRVDP---VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPAT--- 147 (252)
T ss_pred ccCccCH---HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcc---
Confidence 4311100 01234577777763211 11110 10 000 0111111 122334444
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+++ +.+|+++|+| |+.....+.++|.+++.
T Consensus 148 ~LS~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14272 148 GLSGGQQQRLCIARAL-AVEPEILLMDEPTSALDPASTARIEDLMTDLKK 196 (252)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999 9999999999 88899999999998863
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-20 Score=177.88 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=111.6
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC-----CCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~-----~G~I~~~g~~v 209 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|+ +|+|+++|.++
T Consensus 6 ~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 6 KIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN------------DIVSGARLEGAVLLDNENI 73 (251)
T ss_pred EEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CccccCCcccEEEECCEEc
Confidence 4578899998878999999999 99999999999999999999999998 555 69999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc---------hHHHHhCCh----hHHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN---------QPSLLKVTK----QSLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~---------~~~l~~~~~----~~l~~~~p~~~~~ 266 (391)
....... ....+.++++++....+ +.++- +.. ...+..+++ ..+.+..+. .
T Consensus 74 ~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~ 147 (251)
T PRK14249 74 YSPNLDV---VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL---A 147 (251)
T ss_pred cccccCh---HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcc---c
Confidence 4221110 01235677887764321 11110 000 001111221 123344455 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.
T Consensus 148 LS~Gq~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 194 (251)
T PRK14249 148 LSGGQQQRLCIARVL-AIEPEVILMDEPCSALDPVSTMRIEELMQELK 194 (251)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999 8889999999999884
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-20 Score=169.56 Aligned_cols=156 Identities=18% Similarity=0.149 Sum_probs=107.2
Q ss_pred CeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
+.++.++|+ ...+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|+++|.++...+.
T Consensus 3 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~ 70 (218)
T cd03290 3 VTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM------------QTLEGKVHWSNKNESEPSF 70 (218)
T ss_pred eeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCCeEEECCcccccccc
Confidence 356778886 456899999999 99999999999999999999999999 8999999999877643321
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCC---c-ccc----hHHHHhCChhHHhh-----------hchhHHhhcCcccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADT---P-GFN----QPSLLKVTKQSLAQ-----------TFPEIKEMLKANEP 272 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dt---p-g~~----~~~l~~~~~~~l~~-----------~~p~~~~~LSgGq~ 272 (391)
.. ......+.++++++....+ +.++ + ... ...+..+++.+..+ ..+. .|||||+
T Consensus 71 ~~-~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~LS~G~~ 146 (218)
T cd03290 71 EA-TRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI---NLSGGQR 146 (218)
T ss_pred cc-cchhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCC---cCCHHHH
Confidence 10 0001224567777663211 1111 0 011 11112223222222 2234 8999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHH--HHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQ--LLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~--ll~el~~ 309 (391)
||++||+|+ +.+|+++|+| |+.....+++ ++..+++
T Consensus 147 qrv~laral-~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~ 190 (218)
T cd03290 147 QRICVARAL-YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190 (218)
T ss_pred HHHHHHHHH-hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc
Confidence 999999999 9999999999 7778888777 5665543
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-20 Score=202.07 Aligned_cols=160 Identities=19% Similarity=0.182 Sum_probs=116.8
Q ss_pred cCCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 135 WGYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 135 ~g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+.+++++++|+. ..++++|||.+ +|++++|+||||||||||+++|+|++ .|++|.|.++|..+
T Consensus 13 l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll------------~p~~G~i~~~g~~~ 80 (623)
T PRK10261 13 LAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL------------EQAGGLVQCDKMLL 80 (623)
T ss_pred EEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCCeEEEECCEEe
Confidence 346788999963 36999999999 89999999999999999999999999 89999999988644
Q ss_pred cc-------cccccCC-Ccce-eeeEEEEeccCC--C----cccCCc--------cc--------chHHHHhCChh---H
Q 016339 210 GE-------VSTKSGR-GKHT-TRHVSLLPLSGG--G----YLADTP--------GF--------NQPSLLKVTKQ---S 255 (391)
Q Consensus 210 ~~-------v~~~~~~-~~~t-tr~i~~v~~~~~--~----~l~Dtp--------g~--------~~~~l~~~~~~---~ 255 (391)
.. +...... .... ...+++++|... . .+.++- +. ....+..+++. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 160 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQT 160 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhh
Confidence 11 1000000 0001 135888888631 1 111110 11 11224455553 3
Q ss_pred HhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 256 l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
..+.+|. +|||||+||++||+++ +.+|+++|+| |+.....+++++.++..+
T Consensus 161 ~~~~~~~---~LSgGq~QRv~iA~AL-~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~ 217 (623)
T PRK10261 161 ILSRYPH---QLSGGMRQRVMIAMAL-SCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE 217 (623)
T ss_pred HHhCCCc---cCCHHHHHHHHHHHHH-hCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh
Confidence 4677777 9999999999999999 9999999999 899999999999999764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-20 Score=175.32 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=112.0
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC-----CCCCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~-----p~~G~I~~~g~~v 209 (391)
.++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+. . |++|+|.++|.++
T Consensus 5 ~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~------------~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 5 EIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN------------DHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred EEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc------------cCCCCCCcceEEEECCEEc
Confidence 3578899998888999999999 89999999999999999999999997 4 3899999999776
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc---ccCCcc-------cc---------hHHHHhCChh----HHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPG-------FN---------QPSLLKVTKQ----SLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg-------~~---------~~~l~~~~~~----~l~~~~p~~~~~ 266 (391)
...+... ......++++++....+ +.++.. .. ...+..+++. ...+..+. .
T Consensus 73 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~ 146 (250)
T PRK14262 73 YDPQLDV---TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGT---R 146 (250)
T ss_pred ccchhhH---HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChh---h
Confidence 4321100 01234577777763221 111100 00 0011122221 12344444 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||||+||++||+|+ +.+|+++++| |+.....+.++|.++.+
T Consensus 147 LS~Gq~qr~~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14262 147 LSGGQQQRLCIARAL-AVEPEVILLDEPTSALDPIATQRIEKLLEELSE 194 (250)
T ss_pred cCHHHHHHHHHHHHH-hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc
Confidence 999999999999999 9999999999 88899999999999864
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-20 Score=181.75 Aligned_cols=156 Identities=20% Similarity=0.256 Sum_probs=113.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC-----CCCCcceecCcc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~-----p~~G~I~~~g~~ 208 (391)
+.+++++++|++..++++++|++ +|++++|+|+||||||||+++|+|+. + |++|+|.++|.+
T Consensus 25 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~------------~~~~~~~~~G~i~~~g~~ 92 (271)
T PRK14238 25 FDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV------------ELVPSVKTTGKILYRDQN 92 (271)
T ss_pred EEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------cCCCCCCCceeEEECCEE
Confidence 45688999998888999999999 89999999999999999999999998 5 699999999987
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCc---ccCCc-------ccch---------HHHHhC----ChhHHhhhchhHHh
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFNQ---------PSLLKV----TKQSLAQTFPEIKE 265 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~~---------~~l~~~----~~~~l~~~~p~~~~ 265 (391)
+...+.. .....+.+++++++...+ +.++- +... ..+..+ ++....+..+.
T Consensus 93 ~~~~~~~---~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~--- 166 (271)
T PRK14238 93 IFDKSYS---VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAY--- 166 (271)
T ss_pred ccccccc---HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcc---
Confidence 6422110 011235677888764322 11110 0000 001111 11222344455
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 167 ~LSgGe~qrv~laraL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 215 (271)
T PRK14238 167 GLSGGQQQRLCIARCL-AIEPDVILMDEPTSALDPISTLKVEELVQELKK 215 (271)
T ss_pred cCCHHHHHHHHHHHHH-HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc
Confidence 8999999999999999 9999999999 88999999999998864
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-20 Score=175.05 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=111.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc-cc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-VS 213 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~-v~ 213 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+..+..+ .|++|+|.++|.++.. ..
T Consensus 5 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 5 NIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEG-------VKITGKLTMDGEDIYGNID 77 (249)
T ss_pred EEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccC-------CCCceEEEECCEEcccccc
Confidence 4578899998888999999999 8999999999999999999999999821100 1469999999976632 11
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc-h--------HHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN-Q--------PSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~-~--------~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
.. ...+.++++++....+ +.++- +.. . ..+..+++ ....+..+. .||||
T Consensus 78 ~~-----~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~LS~G 149 (249)
T PRK14253 78 VA-----DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAF---GLSGG 149 (249)
T ss_pred hH-----HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcc---cCCHH
Confidence 10 1234577777663321 11110 000 0 01111222 122334444 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 150 ~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 193 (249)
T PRK14253 150 QQQRLCIARTI-AMEPDVILMDEPTSALDPIATHKIEELMEELKK 193 (249)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88899999999999865
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-20 Score=189.83 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=124.4
Q ss_pred cCCeeEEEEcCCcc--chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~--~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++|+|.+.. +|+++||++ +||.+||+|+||||||||+++|.|.+ +|++|+|.++|.++..
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~------------~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW------------DPQQGSITLNGVEIAS 404 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc------------CCCCCeeeECCcChhh
Confidence 45689999997665 999999999 89999999999999999999999999 9999999999999887
Q ss_pred cccccCCCcceeeeEEEEeccCC---Cccc-----CCcccchHH----HHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLA-----DTPGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~~l~-----Dtpg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.++.. ..+.++++.|..+ +.+. .+|....+. +..++++++....|+ -...|||||
T Consensus 405 l~~~~-----~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE 479 (573)
T COG4987 405 LDEQA-----LRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE 479 (573)
T ss_pred CChhh-----HHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence 77642 2334455555422 2233 335555443 456777777666552 334899999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||++|||++ +++.+++++| |+...+.+++++.+-.+
T Consensus 480 ~rRLAlAR~L-L~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~ 522 (573)
T COG4987 480 RRRLALARAL-LHDAPLWLLDEPTEGLDPITERQVLALLFEHAE 522 (573)
T ss_pred HHHHHHHHHH-HcCCCeEEecCCcccCChhhHHHHHHHHHHHhc
Confidence 9999999999 9999999999 89999999999887554
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-20 Score=195.25 Aligned_cols=156 Identities=21% Similarity=0.285 Sum_probs=118.5
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|++ ..+++++|+++ +|+.++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~------------~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW------------PPTSGSVRLDGADLKQ 384 (544)
T ss_pred EEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEehhh
Confidence 557899999954 47999999999 89999999999999999999999999 9999999999988766
Q ss_pred cccccCCCcceeeeEEEEeccCC---CcccCC-----cccchHH----HHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADT-----PGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~~l~Dt-----pg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.+... ..+.+++++++.. +.+.++ +...... +...+..++...+|+ -...|||||
T Consensus 385 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq 459 (544)
T TIGR01842 385 WDRET-----FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQ 459 (544)
T ss_pred CCHHH-----HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHH
Confidence 54322 3456788887632 222222 1122222 223344444444442 123799999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+||++||||+ +.+|+++|+| |++....+.+.+.++.
T Consensus 460 ~qrl~lARal-l~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 501 (544)
T TIGR01842 460 RQRIALARAL-YGDPKLVVLDEPNSNLDEEGEQALANAIKALK 501 (544)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCccccCHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 8889999989888875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-20 Score=195.19 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=115.8
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-----CCCcceec
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFE 205 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-----~~G~I~~~ 205 (391)
.+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|++ +| ++|+|.++
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~------------~~~~~~~~~G~i~~~ 74 (529)
T PRK15134 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL------------PSPPVVYPSGDIRFH 74 (529)
T ss_pred EEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCcCCccceEEEEC
Confidence 35778889963 46999999999 99999999999999999999999998 54 79999999
Q ss_pred CccccccccccCCCcceeeeEEEEeccCCCccc--CC------------cccc--------hHHHHhCChhH---Hhhhc
Q 016339 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA--DT------------PGFN--------QPSLLKVTKQS---LAQTF 260 (391)
Q Consensus 206 g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~--Dt------------pg~~--------~~~l~~~~~~~---l~~~~ 260 (391)
|.++........ .....+.+++++|.....+. .+ .+.. ...+..+++.+ ..+..
T Consensus 75 g~~i~~~~~~~~-~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 75 GESLLHASEQTL-RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred CEecccCCHHHH-HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 987754322100 00012357888876321000 00 0111 12233445533 34566
Q ss_pred hhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 261 p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+. .|||||+||++||+++ +.+|+++|+| |+.....+.++|.++..+
T Consensus 154 ~~---~LSgGe~qrv~iAraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 205 (529)
T PRK15134 154 PH---QLSGGERQRVMIAMAL-LTRPELLIADEPTTALDVSVQAQILQLLRELQQE 205 (529)
T ss_pred Cc---ccCHHHHHHHHHHHHH-hcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh
Confidence 77 9999999999999999 9999999999 899999999999998765
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-20 Score=178.10 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=112.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+.... -..|++|+|+++|.++...+
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-------~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLI-------PGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccC-------CCCCCccEEEECCEEccccc
Confidence 34678999998878999999999 99999999999999999999999986100 00148999999998764321
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCC-------ccc-ch--------HHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADT-------PGF-NQ--------PSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-------pg~-~~--------~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
... ....+.++++++....+ +.++ .+. .. ..+..+++ ..+.+..+. .||+|
T Consensus 77 ~~~---~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LS~G 150 (250)
T PRK14266 77 VDV---VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSAL---GLSGG 150 (250)
T ss_pred ccH---HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcc---cCCHH
Confidence 100 01234577777663322 1111 000 00 01122222 122344444 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++++| |+.....+.++|.++..
T Consensus 151 q~qrv~laral-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14266 151 QQQRLCIARTI-AVSPEVILMDEPCSALDPISTTKIEDLIHKLKE 194 (250)
T ss_pred HHHHHHHHHHH-HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88899999999998854
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-20 Score=167.95 Aligned_cols=143 Identities=22% Similarity=0.260 Sum_probs=107.3
Q ss_pred CCeeEEEEcCC------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 136 GYEPLFCSVES------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 136 g~~~v~~s~~~------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
.+++++++|++ ..++++++|.+ +|++++|+||||||||||+++|+|+.. ..|++|+|.++|.+
T Consensus 5 ~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~----------~~~~~G~i~~~g~~ 74 (194)
T cd03213 5 SFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT----------GLGVSGEVLINGRP 74 (194)
T ss_pred EEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC----------CCCCceEEEECCEe
Confidence 45788999975 57999999999 899999999999999999999999861 15789999999987
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcE
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~ 288 (391)
+... ...+.++++++....+ ...... ..+. +.. .+ ..||+||+||++||+|+ +.+|++
T Consensus 75 ~~~~--------~~~~~i~~~~q~~~~~--~~~t~~-~~i~------~~~---~~-~~LS~G~~qrv~laral-~~~p~i 132 (194)
T cd03213 75 LDKR--------SFRKIIGYVPQDDILH--PTLTVR-ETLM------FAA---KL-RGLSGGERKRVSIALEL-VSNPSL 132 (194)
T ss_pred CchH--------hhhheEEEccCcccCC--CCCcHH-HHHH------HHH---Hh-ccCCHHHHHHHHHHHHH-HcCCCE
Confidence 6431 1335677777653211 110011 1110 000 00 17999999999999999 999999
Q ss_pred EEec------CHHHHHHHHHHHHHHHHH
Q 016339 289 VVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 289 lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+| |+.....+.++|.++.++
T Consensus 133 lllDEP~~~LD~~~~~~l~~~l~~~~~~ 160 (194)
T cd03213 133 LFLDEPTSGLDSSSALQVMSLLRRLADT 160 (194)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 9999 888999999999987653
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-20 Score=178.10 Aligned_cols=160 Identities=14% Similarity=0.203 Sum_probs=112.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+..+... .|++|+|.++|.++.....
T Consensus 22 ~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 22 EVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG-------AKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred EEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccC-------CCcCceEEECCEecccccc
Confidence 4578899998878999999999 9999999999999999999999999721000 1368999999987642111
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCcc-------cc-------hHHHHhCCh----hHHhhhchhHHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTPG-------FN-------QPSLLKVTK----QSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg-------~~-------~~~l~~~~~----~~l~~~~p~~~~~LSgGq~q 273 (391)
.. ....+.++++++....+ +.++-. +. ...+..+++ .+..+..+. .|||||+|
T Consensus 95 ~~---~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LSgGq~q 168 (274)
T PRK14265 95 NS---VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGT---ALSGGQQQ 168 (274)
T ss_pred hh---HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcc---cCCHHHHH
Confidence 00 01234677777763221 111100 00 001112221 122344455 89999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 169 rv~LAraL-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 209 (274)
T PRK14265 169 RLCIARAI-AMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209 (274)
T ss_pred HHHHHHHH-hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 88999999999999864
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-19 Score=175.39 Aligned_cols=161 Identities=18% Similarity=0.198 Sum_probs=113.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+..+.. ..|++|+|+++|.++....
T Consensus 26 l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~-------~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 26 LEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVD-------NCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred EEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCcc-------CCCCceEEEECCEECcccc
Confidence 45689999998888999999999 999999999999999999999999972000 0158999999998764311
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCC-------cccc---------hHHHHhCChh----HHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADT-------PGFN---------QPSLLKVTKQ----SLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-------pg~~---------~~~l~~~~~~----~l~~~~p~~~~~LSgG 270 (391)
.. .....+.++++++....+ +.++ .+.. ...+..+++. ...+..+. .||||
T Consensus 99 ~~---~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~G 172 (272)
T PRK14236 99 VD---VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAF---GLSGG 172 (272)
T ss_pred cC---HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcc---cCCHH
Confidence 10 001235677777763221 1111 1110 0111122221 12233344 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.+++.++.+
T Consensus 173 q~qrv~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~ 216 (272)
T PRK14236 173 QQQRLVIARAI-AIEPEVLLLDEPTSALDPISTLKIEELITELKS 216 (272)
T ss_pred HHHHHHHHHHH-HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 88999999999999864
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=170.67 Aligned_cols=139 Identities=22% Similarity=0.223 Sum_probs=102.4
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC----CCCcceecCccccccccccCCCccee
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP----ILGSKWFEDQRVGEVSTKSGRGKHTT 223 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p----~~G~I~~~g~~v~~v~~~~~~~~~tt 223 (391)
++++++|.+ +|++++|+||||||||||+++|+|+. +| ++|+|+++|.++.... ...
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~~~~~G~i~~~g~~~~~~~-------~~~ 61 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL------------PPGLTQTSGEILLDGRPLLPLS-------IRG 61 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCccCccccEEEECCEechhhh-------hhh
Confidence 467899999 89999999999999999999999998 77 8999999998764321 122
Q ss_pred eeEEEEeccCCCcccC--C-----------ccc--------chHHHHhCChh---HHhhhchhHHhhcCccccccccccc
Q 016339 224 RHVSLLPLSGGGYLAD--T-----------PGF--------NQPSLLKVTKQ---SLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 224 r~i~~v~~~~~~~l~D--t-----------pg~--------~~~~l~~~~~~---~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
+.+++++++....+.. + .+. ....+..+++. .+.+..+. .|||||+||++||+
T Consensus 62 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~LS~G~~qrv~lar 138 (230)
T TIGR02770 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPF---QLSGGMLQRVMIAL 138 (230)
T ss_pred heeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChh---hcCHHHHHHHHHHH
Confidence 4577777663210100 0 000 01122333443 33455555 89999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 139 al-~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~ 174 (230)
T TIGR02770 139 AL-LLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174 (230)
T ss_pred HH-hcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh
Confidence 99 9999999999 888999999999998764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=173.23 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=112.1
Q ss_pred hcCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-----
Q 016339 134 TWGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ----- 207 (391)
Q Consensus 134 ~~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~----- 207 (391)
.+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.++|.
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~------------~~~~G~v~~~G~~~~~g 77 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI------------EIYDSKIKVDGKVLYFG 77 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCcCceeEcCEEEECC
Confidence 367799999999999999999999 99999999999999999999999999 888877766653
Q ss_pred -cccccccccCCCcceeeeEEEEeccCCCc----ccCC-------cccc---------hHHHHhCChh----HHhhhchh
Q 016339 208 -RVGEVSTKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGFN---------QPSLLKVTKQ----SLAQTFPE 262 (391)
Q Consensus 208 -~v~~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~~---------~~~l~~~~~~----~l~~~~p~ 262 (391)
++...... .....++++++....+ +.++ .++. ...+..+++. ...+..+.
T Consensus 78 ~~~~~~~~~-----~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 152 (257)
T PRK14246 78 KDIFQIDAI-----KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPAS 152 (257)
T ss_pred cccccCCHH-----HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcc
Confidence 22211110 1234567777653211 1111 0111 1112223332 22344455
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.||+||+||+++|+|+ +.+|+++++| |+.....+.++|.++++
T Consensus 153 ---~LS~G~~qrl~laral-~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~ 201 (257)
T PRK14246 153 ---QLSGGQQQRLTIARAL-ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN 201 (257)
T ss_pred ---cCCHHHHHHHHHHHHH-HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999 9999999999 78889999999998864
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-20 Score=201.15 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=121.0
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|.. ..+++++|+.+ +|+.++|+|+||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~------------~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY------------TPQHGQVLVDGVDLAI 523 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEehhh
Confidence 557899999953 45899999999 89999999999999999999999999 9999999999998877
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC-----cccchH----HHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQP----SLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
++... .++.+++++|+. .+.+.|+ |..... .+...++.++...+|. ....|||||
T Consensus 524 ~~~~~-----~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 524 ADPAW-----LRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred CCHHH-----HHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 65532 356677888763 2333222 223222 2334455555444442 223799999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+||+++|||+ +.+|+++|+| |+.....+.+.+.++.
T Consensus 599 ~qri~lARal-l~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 640 (694)
T TIGR01846 599 RQRIAIARAL-VGNPRILIFDEATSALDYESEALIMRNMREIC 640 (694)
T ss_pred HHHHHHHHHH-HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 8899999999998874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-21 Score=163.93 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=92.8
Q ss_pred hHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEE
Q 016339 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (391)
Q Consensus 150 L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~ 228 (391)
|+++++.+ +|++++|+|+||||||||+++|+|.. .|++|.|.+++.++...... .....+++
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~------------~~~~G~i~~~~~~~~~~~~~-----~~~~~i~~ 63 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL------------PPDSGSILINGKDISDIDIE-----ELRRRIGY 63 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS------------HESEEEEEETTEEGTTSHHH-----HHHHTEEE
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccc------------cccccccccccccccccccc-----cccccccc
Confidence 56788899 89999999999999999999999999 89999999999888662221 13466888
Q ss_pred EeccCCCc----ccCC--cccchHHHHhCChhHHhhhchh-HHhhcCcccccccccccccccCCCcEEEecCH
Q 016339 229 LPLSGGGY----LADT--PGFNQPSLLKVTKQSLAQTFPE-IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (391)
Q Consensus 229 v~~~~~~~----l~Dt--pg~~~~~l~~~~~~~l~~~~p~-~~~~LSgGq~qr~~iaralh~~eP~~lllDD~ 294 (391)
+++....+ +.++ .......+..++...+.+...+ -...||+||+||++||+++ +.+|+++|+|+|
T Consensus 64 ~~~~~~~~~~~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al-~~~~~llllDEP 135 (137)
T PF00005_consen 64 VPQDPQLFPGLTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARAL-LKNPKLLLLDEP 135 (137)
T ss_dssp EESSHCHHTTSBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHH-HTTSSEEEEEST
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 88762211 1111 0112223445555554444330 0139999999999999999 999999999976
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-20 Score=180.07 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=112.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+|+++||.+ +|++++|+||||||||||+++|+|+..+. ...|++|+|.++|.++.....
T Consensus 47 ~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~-------~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 47 SVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRI-------KAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred EEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc-------CCCCCceEEEECCEEcccccc
Confidence 4578899998888999999999 99999999999999999999999997100 001689999999976643111
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCcc-------------------c---------chHHHHhCCh----hHHhhh
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTPG-------------------F---------NQPSLLKVTK----QSLAQT 259 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg-------------------~---------~~~~l~~~~~----~~l~~~ 259 (391)
.. ....+.++++++....+ +.++-. . ....+..+++ ....+.
T Consensus 120 ~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 196 (305)
T PRK14264 120 NL---VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD 196 (305)
T ss_pred cH---HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcC
Confidence 00 01234567777653211 111000 0 0011112222 123344
Q ss_pred chhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 260 ~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+. .|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++...
T Consensus 197 ~~~---~LSgGq~qrv~LAraL-~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~ 249 (305)
T PRK14264 197 NAL---GLSGGQQQRLCIARCL-AVDPEVILMDEPASALDPIATSKIEDLIEELAEE 249 (305)
T ss_pred ccc---cCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC
Confidence 455 8999999999999999 9999999999 889999999999998653
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-20 Score=175.82 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=111.6
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
..+.+.+.|++..++++++|.+ +|++++|+|+||||||||+++|+|+..+... .|++|+|+++|.++.....
T Consensus 10 ~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~-------~~~~G~i~~~g~~i~~~~~ 82 (261)
T PRK14263 10 DCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKG-------FRFEGHVHFLGQDVYGKGV 82 (261)
T ss_pred EEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccC-------CCCceEEEECCEecccccc
Confidence 3467788898888999999999 9999999999999999999999999821000 1379999999987643211
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCccc--------------chHHHHhCChhH----HhhhchhHHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTPGF--------------NQPSLLKVTKQS----LAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg~--------------~~~~l~~~~~~~----l~~~~p~~~~~LSgGq~q 273 (391)
.. ....+.+++++++...+ +.++-.+ ....+..+++.. ..+..+. .||+||+|
T Consensus 83 ~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~---~LS~G~~q 156 (261)
T PRK14263 83 DP---VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGL---SLSGGQQQ 156 (261)
T ss_pred ch---HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcc---cCCHHHHH
Confidence 10 01235577777763321 1111100 011122222211 1122233 79999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.++.+
T Consensus 157 rv~laral-~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~ 197 (261)
T PRK14263 157 RLCIARAI-ATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197 (261)
T ss_pred HHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 88999999999999853
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-20 Score=181.69 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=112.5
Q ss_pred cCCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|. ...+|+++||.| +|++++|+||||||||||+++|+|+..... ..|++|+|.|+|.++..
T Consensus 81 i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~-------~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 81 FEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIE-------GTSHEGEIYFLGTNTRS 153 (329)
T ss_pred EEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC-------CCCCceEEEECCEEccc
Confidence 45688999995 346999999999 899999999999999999999999972100 02679999999988742
Q ss_pred cccccCCCcceeeeEEEEeccCC---CcccCCcc-------cchH---------HHHhCCh----hHHhhhchhHHhhcC
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPG-------FNQP---------SLLKVTK----QSLAQTFPEIKEMLK 268 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~~l~Dtpg-------~~~~---------~l~~~~~----~~l~~~~p~~~~~LS 268 (391)
..... ....+.++++++... +.+.++-. .... .+..+++ ....+..+. .||
T Consensus 154 ~~~~~---~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~---~LS 227 (329)
T PRK14257 154 KKISS---LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGN---ALS 227 (329)
T ss_pred cccch---HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcc---cCC
Confidence 11000 012356788887632 22222211 1000 1122221 112233344 899
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||+||++||||+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 228 gGqkqRl~LARAl-~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~ 273 (329)
T PRK14257 228 GGQQQRLCIARAI-ALEPEVLLMDEPTSALDPIATAKIEELILELKK 273 (329)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999 78888889999988865
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-19 Score=190.95 Aligned_cols=156 Identities=15% Similarity=0.203 Sum_probs=116.0
Q ss_pred CCeeEEEEcC-----------CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcce
Q 016339 136 GYEPLFCSVE-----------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203 (391)
Q Consensus 136 g~~~v~~s~~-----------~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~ 203 (391)
.+++++++|+ ...+++++||.+ +|++++|+||||||||||+++|+|+. + ++|+|+
T Consensus 277 ~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------------~-~~G~i~ 343 (529)
T PRK15134 277 DVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI------------N-SQGEIW 343 (529)
T ss_pred cccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC------------C-CCcEEE
Confidence 4577888885 246899999999 99999999999999999999999997 5 799999
Q ss_pred ecCccccccccccCCCcceeeeEEEEeccCC--C----cccCCc---------cc--------chHHHHhCChh-HHhhh
Q 016339 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG--G----YLADTP---------GF--------NQPSLLKVTKQ-SLAQT 259 (391)
Q Consensus 204 ~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~--~----~l~Dtp---------g~--------~~~~l~~~~~~-~l~~~ 259 (391)
++|.++...+.... ....+.++++++... . .+.++- .. ....+..+++. ...+.
T Consensus 344 ~~g~~i~~~~~~~~--~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 421 (529)
T PRK15134 344 FDGQPLHNLNRRQL--LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR 421 (529)
T ss_pred ECCEEccccchhhH--HHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc
Confidence 99987654322100 001245777777631 1 111110 00 11223445654 45667
Q ss_pred chhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 260 ~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|. .|||||+||++||+++ +.+|+++|+| |+.....++++|.++.++
T Consensus 422 ~~~---~LSgG~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 422 YPA---EFSGGQRQRIAIARAL-ILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred CCc---cCCHHHHHHHHHHHHH-hCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 777 9999999999999999 9999999999 899999999999998764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-19 Score=171.77 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=111.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC---CCCcceecCccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGE 211 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p---~~G~I~~~g~~v~~ 211 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+... .| ++|+|.++|.++..
T Consensus 7 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~----------~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 7 TSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL----------IPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred EEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc----------CCCCCcccEEEEcCEEccc
Confidence 4578899998888999999999 9999999999999999999999998610 13 58999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCCc-------ccch-----H----HHHhCCh----hHHhhhchhHHhhcC
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFNQ-----P----SLLKVTK----QSLAQTFPEIKEMLK 268 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~~-----~----~l~~~~~----~~l~~~~p~~~~~LS 268 (391)
..... ....+.++++++....+ +.++. +... . .+..+++ ....+..+. .||
T Consensus 77 ~~~~~---~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~---~LS 150 (252)
T PRK14255 77 PNEDV---VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESAL---SLS 150 (252)
T ss_pred ccccH---HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcc---cCC
Confidence 11100 01234677888764321 11110 1000 0 0111111 122334444 899
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||+||++||+++ +.+|+++|+| |+.....+.++|.++..
T Consensus 151 ~Gq~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14255 151 GGQQQRVCIARVL-AVKPDVILLDEPTSALDPISSTQIENMLLELRD 196 (252)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999 88899999999999865
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-20 Score=194.50 Aligned_cols=156 Identities=18% Similarity=0.270 Sum_probs=116.7
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|++ ..+++++|+.+ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++...
T Consensus 335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~------------~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY------------DPTVGQILIDGIDINTV 402 (585)
T ss_pred EEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC------------CCCCCEEEECCEEhhhC
Confidence 557899999975 46899999999 99999999999999999999999999 99999999999887655
Q ss_pred ccccCCCcceeeeEEEEeccCC---CcccCC-----cccchHH----HHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGG---GYLADT-----PGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~---~~l~Dt-----pg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... ..+.+++++|+.. +.+.++ |...+.. +...+..+.....|. ....|||||+
T Consensus 403 ~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 403 TRES-----LRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred CHHH-----HHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 4322 3456788887632 222222 2222221 222233333222221 1237999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |++....+.+.+.++.
T Consensus 478 qrl~lARal-l~~p~ililDEpts~LD~~~~~~i~~~l~~~~ 518 (585)
T TIGR01192 478 QRLAIARAI-LKNAPILVLDEATSALDVETEARVKNAIDALR 518 (585)
T ss_pred HHHHHHHHH-hcCCCEEEEECCccCCCHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 8889999999888764
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-20 Score=193.09 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=104.7
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeE
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i 226 (391)
.+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+.. ....+.+
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~p~~G~I~~~g~~~~~~~~~----~~~~~~i 340 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD------------KRAGGEIRLNGKDISPRSPL----DAVKKGM 340 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------cCCCCeEEECCEECCCCCHH----HHHHCCc
Confidence 4899999999 89999999999999999999999999 99999999998765321110 0011234
Q ss_pred EEEeccC---CC----cccCC---c------------c---------cchHHHHhCChh-HHhhhchhHHhhcCcccccc
Q 016339 227 SLLPLSG---GG----YLADT---P------------G---------FNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 227 ~~v~~~~---~~----~l~Dt---p------------g---------~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr 274 (391)
+++++.. +. .+.++ + + .....+..+++. +..+..|. .|||||+||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGq~qr 417 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT---ELSGGNQQK 417 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc---cCChHHHHH
Confidence 5555431 10 01000 0 0 011234445554 45566677 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+++ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 418 v~lAral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 458 (510)
T PRK09700 418 VLISKWL-CCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD 458 (510)
T ss_pred HHHHHHH-hcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC
Confidence 9999999 9999999999 899999999999998753
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-20 Score=194.92 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=116.7
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|.. ..+++++|+.+ +|+.++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~------------~p~~G~i~~~g~~~~~ 381 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF------------DVSEGDIRFHDIPLTK 381 (569)
T ss_pred EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCEEEECCEEHhh
Confidence 456888999964 46899999999 99999999999999999999999999 9999999999988765
Q ss_pred cccccCCCcceeeeEEEEeccCC---CcccCC-----cccchHH----HHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADT-----PGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~~l~Dt-----pg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.+... ....+++++++.. +.+.++ |...+.. +...+..+....+|. ....|||||
T Consensus 382 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq 456 (569)
T PRK10789 382 LQLDS-----WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQ 456 (569)
T ss_pred CCHHH-----HHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHH
Confidence 54321 3456777777632 223222 2222222 223333333333332 123699999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+||++|||++ +.+|+++|+| |++..+.+.+.+.++.
T Consensus 457 ~qRi~lARal-l~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 498 (569)
T PRK10789 457 KQRISIARAL-LLNAEILILDDALSAVDGRTEHQILHNLRQWG 498 (569)
T ss_pred HHHHHHHHHH-hcCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 8889999999888764
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-20 Score=168.04 Aligned_cols=155 Identities=21% Similarity=0.255 Sum_probs=114.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
.++++++..++..++++++++ .||+++|+||||+||||||+.|+|.. .|++|++.++|......+..
T Consensus 4 a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel------------~p~~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 4 AENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL------------SPDSGEVTLNGVPLNSWPPE 71 (259)
T ss_pred eeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc------------CCCCCeEeeCCcChhhCCHH
Confidence 478889999999999999999 89999999999999999999999999 99999999999877655432
Q ss_pred cCCCcceeeeEEEEeccC--------------CCccc---CCc----ccchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 216 SGRGKHTTRHVSLLPLSG--------------GGYLA---DTP----GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~--------------~~~l~---Dtp----g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..++.+.++|.. |..-. ..| .+....+...+...++.++-. .||||||||
T Consensus 72 ~-----lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~---~LSGGEqQR 143 (259)
T COG4559 72 E-----LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYR---TLSGGEQQR 143 (259)
T ss_pred H-----HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchh---hcCchHHHH
Confidence 1 111222222220 10000 111 123344566777777777655 999999999
Q ss_pred cccccccccC------CCcEEEec------CHHHHHHHHHHHHHHHHHHh
Q 016339 275 CSFNNCLHLG------EPGCVVKG------DWERYQYYFQLLDEIRIREE 312 (391)
Q Consensus 275 ~~iaralh~~------eP~~lllD------D~~~~~~~~~ll~el~~~~~ 312 (391)
+.|||.| .. ++..+++| |.......+++.+++..+..
T Consensus 144 VqlARvL-aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~ 192 (259)
T COG4559 144 VQLARVL-AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGG 192 (259)
T ss_pred HHHHHHH-HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCC
Confidence 9999987 42 23378888 78888999999998876653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-20 Score=191.06 Aligned_cols=154 Identities=18% Similarity=0.122 Sum_probs=113.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-CCCcceecCcccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. ++ ++|+|+++|.++..-..
T Consensus 263 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~------------~~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 263 LNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH------------PQGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred EeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CcccCCeEEEecccCCCCCC
Confidence 355778888778999999999 99999999999999999999999976 55 79999999875421000
Q ss_pred ccCCCcceeeeEEEEeccCCCc------c--------cCC-------cc----cchHHHHhCChhH-HhhhchhHHhhcC
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY------L--------ADT-------PG----FNQPSLLKVTKQS-LAQTFPEIKEMLK 268 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~------l--------~Dt-------pg----~~~~~l~~~~~~~-l~~~~p~~~~~LS 268 (391)
. ....+.++++++..... . .+. +. .....+..+++.. ..+..|. .||
T Consensus 331 ~----~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LS 403 (490)
T PRK10938 331 I----WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFH---SLS 403 (490)
T ss_pred H----HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchh---hCC
Confidence 0 00123455555532110 0 000 00 1122344566665 6677777 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 404 gGq~qrv~la~al-~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~ 450 (490)
T PRK10938 404 WGQQRLALIVRAL-VKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE 450 (490)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999 889999999999998765
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-20 Score=177.78 Aligned_cols=157 Identities=19% Similarity=0.236 Sum_probs=112.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC-----CCcceecCcc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQR 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~-----~G~I~~~g~~ 208 (391)
+.+++++++|++..+++++||.+ +|++++|+|+||||||||+++|+|+. +|+ +|+|.++|.+
T Consensus 8 l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~------------~~~g~i~~~G~i~~~g~~ 75 (261)
T PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN------------ELESEVRVEGRVEFFNQN 75 (261)
T ss_pred EEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc------------CCCCCccccceEEECCEE
Confidence 45688999998878999999999 99999999999999999999999998 553 7999998876
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCc---ccCCc-------cc-c--------hHHHHhCCh----hHHhhhchhHHh
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF-N--------QPSLLKVTK----QSLAQTFPEIKE 265 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~-~--------~~~l~~~~~----~~l~~~~p~~~~ 265 (391)
+....... ....+.++++++....+ +.++- ++ . ...+..+++ ..+.+..+.
T Consensus 76 i~~~~~~~---~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--- 149 (261)
T PRK14258 76 IYERRVNL---NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSAL--- 149 (261)
T ss_pred hhccccch---HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcc---
Confidence 63211100 01234577777653221 11110 11 0 011112222 122344444
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+++ +.+|+++|+| |+.....+.++|.++...
T Consensus 150 ~LSgGq~qrv~laral-~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~ 199 (261)
T PRK14258 150 DLSGGQQQRLCIARAL-AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR 199 (261)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999 9999999999 889999999999998653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-20 Score=213.46 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=123.3
Q ss_pred cCCeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.|++++++|... .+|+++||++ +|+.+||||+||||||||+++|.|++ +|++|+|.++|.++..
T Consensus 1238 I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~------------~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV------------ELERGRILIDGCDISK 1305 (1622)
T ss_pred EEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC------------CCCCceEEECCEeccc
Confidence 5579999999643 6999999999 89999999999999999999999999 9999999999999987
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC--cc--cch----HHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT--PG--FNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt--pg--~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
++... .++++++++|+. .+.+.++ |+ ..+ ..+...++.+.....|. -...||||||
T Consensus 1306 i~l~~-----LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130 1306 FGLMD-----LRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred CCHHH-----HHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence 76543 567799999983 3444443 21 122 22334455544444442 2237999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |.+....+.+.|++..
T Consensus 1381 QrlaLARAL-Lr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~ 1421 (1622)
T PLN03130 1381 QLLSLARAL-LRRSKILVLDEATAAVDVRTDALIQKTIREEF 1421 (1622)
T ss_pred HHHHHHHHH-HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Confidence 999999999 9999999999 8888888888888763
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-20 Score=192.87 Aligned_cols=154 Identities=14% Similarity=0.177 Sum_probs=110.5
Q ss_pred CeeEEEEcC---CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC-CCCCcceecCccccc
Q 016339 137 YEPLFCSVE---SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-PILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~---~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~-p~~G~I~~~g~~v~~ 211 (391)
+++++++|+ +..+++++||.+ +|++++|+||||||||||+++|+|+. + |++|+|+++|.++..
T Consensus 262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~~~~~G~i~~~g~~~~~ 329 (506)
T PRK13549 262 VRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY------------PGRWEGEIFIDGKPVKI 329 (506)
T ss_pred EecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC------------CCCCCcEEEECCEECCC
Confidence 355677773 346899999999 89999999999999999999999998 7 599999999876532
Q ss_pred cccccCCCcceeeeEEEEeccCC---C----cccCCc--------------------ccchHHHHhCChh-HHhhhchhH
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---G----YLADTP--------------------GFNQPSLLKVTKQ-SLAQTFPEI 263 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~----~l~Dtp--------------------g~~~~~l~~~~~~-~l~~~~p~~ 263 (391)
.+.. ......++++++... . .+.++- ......+..+++. ...+.++.
T Consensus 330 ~~~~----~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 404 (506)
T PRK13549 330 RNPQ----QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA- 404 (506)
T ss_pred CCHH----HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc-
Confidence 1110 001223555555421 0 000100 0011223445553 34566666
Q ss_pred HhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 264 ~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.||||||||++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 405 --~LSgG~kqrv~lA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 454 (506)
T PRK13549 405 --RLSGGNQQKAVLAKCL-LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454 (506)
T ss_pred --cCCHHHHHHHHHHHHH-hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC
Confidence 9999999999999999 9999999999 889999999999998754
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-19 Score=174.19 Aligned_cols=153 Identities=17% Similarity=0.161 Sum_probs=107.6
Q ss_pred eeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcce-----------e
Q 016339 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------F 204 (391)
Q Consensus 138 ~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~-----------~ 204 (391)
.+++++|+.+ .+++++++ + +|++++|+||||||||||+++|+|++ +|++|+|+ +
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~------------~p~~G~I~~~~~~~~~~~~~ 70 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKL------------KPNLGKFDDPPDWDEILDEF 70 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCCceEeeccccchhhhhc
Confidence 3577889765 59999995 7 89999999999999999999999999 99999996 6
Q ss_pred cCccccccccccCCCcceeeeEEEEeccCCCc-------ccCC------cccchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY-------LADT------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 205 ~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~-------l~Dt------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
+|.++........ + ....++++++..... +.+. .......+..+++....+..+. .||+||
T Consensus 71 ~g~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~ 144 (255)
T cd03236 71 RGSELQNYFTKLL--E-GDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNID---QLSGGE 144 (255)
T ss_pred cCchhhhhhHHhh--h-cccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChh---hCCHHH
Confidence 6665533211100 0 011233333321111 0000 0111223444555555566666 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++++| |+.....+.+++.++.++
T Consensus 145 ~qrv~laral-~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~ 188 (255)
T cd03236 145 LQRVAIAAAL-ARDADFYFFDEPSSYLDIKQRLNAARLIRELAED 188 (255)
T ss_pred HHHHHHHHHH-HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 888999999999998754
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-20 Score=213.27 Aligned_cols=156 Identities=21% Similarity=0.191 Sum_probs=122.9
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|.. ..+|+++||.+ +|+.+||||+||||||||+++|.|++ +|++|+|.++|.++..
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~------------~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV------------ELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------cCCCceEEECCEEhhh
Confidence 567999999954 46999999999 89999999999999999999999999 9999999999999987
Q ss_pred cccccCCCcceeeeEEEEecc---CCCcccCC--cc--cch----HHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLS---GGGYLADT--PG--FNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt--pg--~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
++... .++++++++|+ +.+.+.++ |+ ..+ ..+...++.+.....|. ....||||||
T Consensus 1303 i~~~~-----lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232 1303 FGLTD-----LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred CCHHH-----HHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence 76543 46778999988 33444443 21 222 22344455554444442 2237999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |.+....+.+.+++..
T Consensus 1378 QrlaLARAL-Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~ 1418 (1495)
T PLN03232 1378 QLLSLARAL-LRRSKILVLDEATASVDVRTDSLIQRTIREEF 1418 (1495)
T ss_pred HHHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 999999999 9999999999 8888888888887753
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-20 Score=194.99 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=112.5
Q ss_pred CeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec-Cccc
Q 016339 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQRV 209 (391)
Q Consensus 137 ~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~-g~~v 209 (391)
++++.++|+. ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++ |...
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL------------EPTSGEVNVRVGDEW 349 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEEecCCcc
Confidence 4667888842 46899999999 89999999999999999999999999 8999999995 5322
Q ss_pred cccccccC-CCcceeeeEEEEeccCCCc----ccCCc------cc--------chHHHHhCChhH-----HhhhchhHHh
Q 016339 210 GEVSTKSG-RGKHTTRHVSLLPLSGGGY----LADTP------GF--------NQPSLLKVTKQS-----LAQTFPEIKE 265 (391)
Q Consensus 210 ~~v~~~~~-~~~~ttr~i~~v~~~~~~~----l~Dtp------g~--------~~~~l~~~~~~~-----l~~~~p~~~~ 265 (391)
..+..... ......+.++++++....+ +.++- .. ....+..+++.. +.+.+|.
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~--- 426 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPD--- 426 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChh---
Confidence 11111000 0000123577777763321 11110 00 011233445532 4567777
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 427 ~LSgGq~qrv~laral-~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~ 476 (520)
T TIGR03269 427 ELSEGERHRVALAQVL-IKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476 (520)
T ss_pred hCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999 899999999999998765
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-20 Score=193.78 Aligned_cols=156 Identities=13% Similarity=0.142 Sum_probs=115.3
Q ss_pred hcCCeeEEEEcCCc-----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc
Q 016339 134 TWGYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (391)
Q Consensus 134 ~~g~~~v~~s~~~~-----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~ 207 (391)
.+.+++++++|++. .+|+++|+++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~------------~p~~G~i~~~g~ 404 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY------------IPQEGEILLDGA 404 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCE
Confidence 35678999999752 4899999999 99999999999999999999999999 999999999998
Q ss_pred cccccccccCCCcceeeeEEEEeccC---CCcccCC--cccch----HHHHhCChhHHhhhchhH---HhhcCccccccc
Q 016339 208 RVGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADT--PGFNQ----PSLLKVTKQSLAQTFPEI---KEMLKANEPAKC 275 (391)
Q Consensus 208 ~v~~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt--pg~~~----~~l~~~~~~~l~~~~p~~---~~~LSgGq~qr~ 275 (391)
++...+... ....+++++++. .+.+.++ |...+ ..+..+++.+.....|+. ...|||||+||+
T Consensus 405 ~i~~~~~~~-----~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 405 AVSADSRDD-----YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred ECCCCCHHH-----HHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 886654321 345677777763 2223222 11111 223344444444444432 137999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHH-HHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLL-DEI 307 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll-~el 307 (391)
+||||+ +.+|+++|+| |++..+.+.+.+ +.+
T Consensus 480 alaRal-l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 517 (555)
T TIGR01194 480 ALICAW-LEDRPILLFDEWAADQDPAFKRFFYEELLPDL 517 (555)
T ss_pred HHHHHH-HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 999999 9999999999 788888876644 344
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.1e-20 Score=169.93 Aligned_cols=160 Identities=23% Similarity=0.236 Sum_probs=116.8
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++++.|+++.+|++|++.+ +|+.++|+|||||||||||++++|.+ .|++|.+.+.|.+.+...
T Consensus 32 i~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~------------~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH------------PPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred EEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc------------CCCCCceeeeeeeccCCc
Confidence 45689999999999999999999 89999999999999999999999999 888999888776554322
Q ss_pred c-------------ccC-C--CcceeeeEEEE--eccCCCcccCC-c---ccchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 214 T-------------KSG-R--GKHTTRHVSLL--PLSGGGYLADT-P---GFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 214 ~-------------~~~-~--~~~ttr~i~~v--~~~~~~~l~Dt-p---g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
- ... . ..++-+++.+- +-..+.+-.+. + ......+..++..+++++.-. .||-||
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~---~LS~Ge 176 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG---SLSQGE 176 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh---hcCHhH
Confidence 1 100 0 00111222110 10111111011 0 112234556788888888777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+.||||+ +..|.++|+| |....+.+++.+.++...
T Consensus 177 ~rrvLiaRAL-v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~ 220 (257)
T COG1119 177 QRRVLIARAL-VKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220 (257)
T ss_pred HHHHHHHHHH-hcCCCEEEecCccccCChHHHHHHHHHHHHHhcC
Confidence 9999999999 9999999999 788888999999988755
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-20 Score=175.02 Aligned_cols=138 Identities=14% Similarity=0.029 Sum_probs=91.9
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcce-ecCccccccccccCCCccee--e
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-FEDQRVGEVSTKSGRGKHTT--R 224 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~-~~g~~v~~v~~~~~~~~~tt--r 224 (391)
+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|. +++..+. +...+...+..+ .
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~~~sG~i~~~~~~~~~-~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD------------APDEGDFIGLRGDALP-LGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------cCCCCCEEEecCceec-cccccccCCcCcHHH
Confidence 688999999 89999999999999999999999999 99999996 7765431 111112222221 2
Q ss_pred eEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHH
Q 016339 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQ 298 (391)
Q Consensus 225 ~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~ 298 (391)
++.+....++ .+...+........++....+..+. .||+||+||++||+|+ +.+|+++|+| |+....
T Consensus 69 nl~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~---~lS~G~~qrv~la~al-~~~p~llllDEP~~~lD~~~~~ 141 (213)
T PRK15177 69 NARMMASLYG---LDGDEFSHFCYQLTQLEQCYTDRVS---EYSVTMKTHLAFAINL-LLPCRLYIADGKLYTGDNATQL 141 (213)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHhChhHHhhchHh---hcCHHHHHHHHHHHHH-hcCCCEEEECCCCccCCHHHHH
Confidence 2211100000 0101111111122344455566666 9999999999999999 9999999999 567777
Q ss_pred HHHHHHHH
Q 016339 299 YYFQLLDE 306 (391)
Q Consensus 299 ~~~~ll~e 306 (391)
.+.+++.+
T Consensus 142 ~~~~~l~~ 149 (213)
T PRK15177 142 RMQAALAC 149 (213)
T ss_pred HHHHHHHH
Confidence 77776644
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-19 Score=172.59 Aligned_cols=140 Identities=18% Similarity=0.147 Sum_probs=102.8
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEE
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~ 227 (391)
+|+++||.+ +|++++|+||||||||||+++|+|+. ++ +|+|.++|.++...+... ..+.++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~------------~~-~G~i~~~g~~i~~~~~~~-----~~~~i~ 72 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL------------PG-SGSIQFAGQPLEAWSAAE-----LARHRA 72 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CC-CeEEEECCEecCcCCHHH-----HhhheE
Confidence 799999999 89999999999999999999999987 54 899999998764322110 123355
Q ss_pred EEeccCCCc----ccCC------cc--------cchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC-----
Q 016339 228 LLPLSGGGY----LADT------PG--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG----- 284 (391)
Q Consensus 228 ~v~~~~~~~----l~Dt------pg--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~----- 284 (391)
++++..... +.++ .+ .....+..+++....+..+. .|||||+||++||+|+ +.
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~la~al-~~~~~~~ 148 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVN---QLSGGEWQRVRLAAVV-LQVWPDI 148 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcc---cCCHHHHHHHHHHHHH-hcccccc
Confidence 555542111 1110 00 01223445566666667777 9999999999999999 76
Q ss_pred --CCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 285 --EPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 285 --eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+++|+| |+.....+.++|.++..+
T Consensus 149 ~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~ 182 (248)
T PRK03695 149 NPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182 (248)
T ss_pred CCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC
Confidence 67999999 889999999999998653
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-20 Score=194.01 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=113.8
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
++++++|++. .|+++++.+ +|++++|+||||||||||+++|+|+. +|++|+|.++ ..++.+++..
T Consensus 344 ~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~------------~p~~G~I~~~-~~i~y~~Q~~ 409 (590)
T PRK13409 344 PDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL------------KPDEGEVDPE-LKISYKPQYI 409 (590)
T ss_pred cceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEEe-eeEEEecccc
Confidence 4566677654 488999999 89999999999999999999999999 9999999886 5566666654
Q ss_pred CCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec--
Q 016339 217 GRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-- 292 (391)
Q Consensus 217 ~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-- 292 (391)
......| .++.+. . .....+......+..+++..+.+..+. .|||||+||++||+|+ +.+|+++|+|
T Consensus 410 ~~~~~~tv~e~l~~~-~----~~~~~~~~~~~~L~~l~l~~~~~~~~~---~LSGGe~QRvaiAraL-~~~p~llLLDEP 480 (590)
T PRK13409 410 KPDYDGTVEDLLRSI-T----DDLGSSYYKSEIIKPLQLERLLDKNVK---DLSGGELQRVAIAACL-SRDADLYLLDEP 480 (590)
T ss_pred cCCCCCcHHHHHHHH-h----hhcChHHHHHHHHHHCCCHHHHhCCcc---cCCHHHHHHHHHHHHH-hcCCCEEEEeCC
Confidence 3222222 111110 0 000111123445667788788888888 9999999999999999 9999999999
Q ss_pred ----CHHHHHHHHHHHHHHHHH
Q 016339 293 ----DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ----D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.++|.++..+
T Consensus 481 t~~LD~~~~~~l~~~l~~l~~~ 502 (590)
T PRK13409 481 SAHLDVEQRLAVAKAIRRIAEE 502 (590)
T ss_pred ccCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999998765
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-20 Score=191.52 Aligned_cols=153 Identities=14% Similarity=0.197 Sum_probs=108.7
Q ss_pred eeEEEEc---CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-CCCcceecCcccccc
Q 016339 138 EPLFCSV---ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEV 212 (391)
Q Consensus 138 ~~v~~s~---~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-~~G~I~~~g~~v~~v 212 (391)
++++++| ++..+++++||.+ +|++++|+||||||||||+++|+|+. +| ++|+|+++|.++...
T Consensus 261 ~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 261 RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY------------PGKFEGNVFINGKPVDIR 328 (500)
T ss_pred eCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC------------CCCCCeEEEECCEECCCC
Confidence 4556667 2346899999999 99999999999999999999999998 75 899999998765321
Q ss_pred ccccCCCcceeeeEEEEeccCC---Cc----ccCCc------------c--------cchHHHHhCChhH-HhhhchhHH
Q 016339 213 STKSGRGKHTTRHVSLLPLSGG---GY----LADTP------------G--------FNQPSLLKVTKQS-LAQTFPEIK 264 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~---~~----l~Dtp------------g--------~~~~~l~~~~~~~-l~~~~p~~~ 264 (391)
... ....++++++++... .+ +.++. . .....+..+++.. ..+..+.
T Consensus 329 ~~~----~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 402 (500)
T TIGR02633 329 NPA----QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-- 402 (500)
T ss_pred CHH----HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc--
Confidence 110 001234555555421 10 00000 0 0112234445432 3456666
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+++ +.+|+++|+| |+.....+.+++.++.+.
T Consensus 403 -~LSgGqkqrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 452 (500)
T TIGR02633 403 -RLSGGNQQKAVLAKML-LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452 (500)
T ss_pred -cCCHHHHHHHHHHHHH-hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC
Confidence 9999999999999999 9999999999 889999999999998754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-19 Score=158.80 Aligned_cols=121 Identities=21% Similarity=0.378 Sum_probs=101.9
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+|++ +|.+|+++++|..+......
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~------------~~~~G~i~~~~~~~~~~~~~ 69 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL------------KPTSGEILIDGKDIAKLPLE 69 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCEEcccCCHH
Confidence 467888898778999999999 89999999999999999999999999 89999999998766433211
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
. ....++++++ ||+||+||++||+++ +.+|+++++|
T Consensus 70 ~-----~~~~i~~~~q-----------------------------------lS~G~~~r~~l~~~l-~~~~~i~ilDEp~ 108 (157)
T cd00267 70 E-----LRRRIGYVPQ-----------------------------------LSGGQRQRVALARAL-LLNPDLLLLDEPT 108 (157)
T ss_pred H-----HHhceEEEee-----------------------------------CCHHHHHHHHHHHHH-hcCCCEEEEeCCC
Confidence 1 2344555554 999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|......+.+++.++...
T Consensus 109 ~~lD~~~~~~l~~~l~~~~~~ 129 (157)
T cd00267 109 SGLDPASRERLLELLRELAEE 129 (157)
T ss_pred cCCCHHHHHHHHHHHHHHHHC
Confidence 788888898999887653
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-20 Score=189.38 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=110.7
Q ss_pred cCCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|++. .+|++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|....
T Consensus 22 L~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl------------~P~sGeI~I~G~~~~ 89 (549)
T PRK13545 22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT------------MPNKGTVDIKGSAAL 89 (549)
T ss_pred eEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC------------CCCceEEEECCEeee
Confidence 3457788888773 5899999999 89999999999999999999999999 999999999886421
Q ss_pred ccccccCCCccee--eeEEEEeccCCCcccCCcc---cchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCC
Q 016339 211 EVSTKSGRGKHTT--RHVSLLPLSGGGYLADTPG---FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (391)
Q Consensus 211 ~v~~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg---~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~e 285 (391)
+..........| .++.+.....+ .+... .....+..+++....+..+. .|||||+||++||+|+ +.+
T Consensus 90 -i~~~~~l~~~lTV~EnL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~~~---~LSGGQrQRVaLArAL-~~~ 161 (549)
T PRK13545 90 -IAISSGLNGQLTGIENIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQPVK---TYSSGMKSRLGFAISV-HIN 161 (549)
T ss_pred -EEeccccCCCCcHHHHHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCcc---cCCHHHHHHHHHHHHH-HhC
Confidence 111111111111 11111000000 00000 11123445666666777777 9999999999999999 999
Q ss_pred CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 286 PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 286 P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+++|+| |+.....++++|.++.+.
T Consensus 162 P~LLLLDEPTsgLD~~sr~~LlelL~el~~~ 192 (549)
T PRK13545 162 PDILVIDEALSVGDQTFTKKCLDKMNEFKEQ 192 (549)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 9999999 888999999999988643
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-19 Score=177.89 Aligned_cols=186 Identities=18% Similarity=0.192 Sum_probs=132.5
Q ss_pred CCeeEEEEcC----CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~----~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
..+++++.|. ...++++|||.+ .||++||||.||||||-..+.+++++..... ..-+|+|.|+|.++-
T Consensus 8 ~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~-------~~~sg~i~f~G~dll 80 (534)
T COG4172 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAA-------AHPSGSILFDGEDLL 80 (534)
T ss_pred eeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcc-------cCccceeEEcChhhh
Confidence 3467777775 567999999999 9999999999999999999999999842111 234799999999987
Q ss_pred ccccccCCCcce-eeeEEEEeccCCCcc----------cC----Ccccc--------hHHHHhCCh---hHHhhhchhHH
Q 016339 211 EVSTKSGRGKHT-TRHVSLLPLSGGGYL----------AD----TPGFN--------QPSLLKVTK---QSLAQTFPEIK 264 (391)
Q Consensus 211 ~v~~~~~~~~~t-tr~i~~v~~~~~~~l----------~D----tpg~~--------~~~l~~~~~---~~l~~~~p~~~ 264 (391)
..++..- +.. -..++++||+.-..+ .+ ..+.. ...+..+++ +..++.||+
T Consensus 81 ~~se~~l--r~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH-- 156 (534)
T COG4172 81 AASERQL--RGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPH-- 156 (534)
T ss_pred cCCHHHH--hhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc--
Confidence 7766421 112 246889998732211 00 01111 122334444 345778999
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh----hhhhhhcccccccccccccCc
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF----QLRTFGTKREGDVRYKVGDMG 334 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 334 (391)
+|||||+||+.||.|+ +++|+++|.| |..-..+++++|++|..+... +.+..+.-+.-..+.-++..|
T Consensus 157 -eLSGGqRQRVMIAMAL-an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 157 -ELSGGQRQRVMIAMAL-ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred -ccCcchhhHHHHHHHH-cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 9999999999999999 9999999999 778999999999999987665 334444444333344444444
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-19 Score=171.41 Aligned_cols=163 Identities=13% Similarity=0.169 Sum_probs=111.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|.+ +|++++|+|+||||||||+++|+|+..+... .|++|+|.++|..+....
T Consensus 17 l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 17 SEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPG-------NHYEGEIILHPDNVNILS 89 (265)
T ss_pred EEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCC-------CCcccEEEEcCccccccc
Confidence 34688999998888999999999 9999999999999999999999999821000 127999999987653211
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc---------hHHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN---------QPSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~---------~~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
.... .......++++++....+ +.++. ++. ...+..+++ ....+..+. .||+|
T Consensus 90 ~~~~-~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LS~G 165 (265)
T PRK14252 90 PEVD-PIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAF---NLSGG 165 (265)
T ss_pred cccC-HHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcc---cCCHH
Confidence 1000 001234577777653221 11110 100 011111221 122233334 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.+++.
T Consensus 166 ~~qrv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 209 (265)
T PRK14252 166 QQQRLCIARAL-ATDPEILLFDEPTSALDPIATASIEELISDLKN 209 (265)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 88899999999998864
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-19 Score=190.72 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=111.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-ccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-~v~~v~~ 214 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.+++. .++.+++
T Consensus 322 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~------------~p~~G~i~~~~~~~i~~~~q 389 (530)
T PRK15064 322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL------------EPDSGTVKWSENANIGYYAQ 389 (530)
T ss_pred EEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCceEEEEEcc
Confidence 456788898888999999999 89999999999999999999999999 999999998873 4666666
Q ss_pred ccC--CCccee--eeEEEEeccCCCcccCCcccchHHHHhCCh-hHHhhhchhHHhhcCcccccccccccccccCCCcEE
Q 016339 215 KSG--RGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCV 289 (391)
Q Consensus 215 ~~~--~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~-~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~l 289 (391)
.+. .....+ .++.+. .. ...........+..+++ ....+..+. .|||||+||++||+++ +.+|+++
T Consensus 390 ~~~~~~~~~~t~~~~~~~~----~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGq~qrv~la~al-~~~p~ll 460 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQW----RQ-EGDDEQAVRGTLGRLLFSQDDIKKSVK---VLSGGEKGRMLFGKLM-MQKPNVL 460 (530)
T ss_pred cccccCCCCCcHHHHHHHh----cc-CCccHHHHHHHHHHcCCChhHhcCccc---ccCHHHHHHHHHHHHH-hcCCCEE
Confidence 432 111111 111100 00 00001112234555666 356677777 9999999999999999 9999999
Q ss_pred Eec------CHHHHHHHHHHHHHH
Q 016339 290 VKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 290 llD------D~~~~~~~~~ll~el 307 (391)
|+| |+.....+.+++.++
T Consensus 461 lLDEPt~~LD~~~~~~l~~~l~~~ 484 (530)
T PRK15064 461 VMDEPTNHMDMESIESLNMALEKY 484 (530)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHC
Confidence 999 888999998888875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-19 Score=185.44 Aligned_cols=182 Identities=14% Similarity=0.139 Sum_probs=125.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
.++++++|+...+|++++|.+ +|++++|+|.||||||||+|+|+|.+ .|++|+|+++|+.+...++.
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~------------~p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY------------PPDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc------------cCCCceEEECCEEccCCCHH
Confidence 578999999999999999999 99999999999999999999999999 99999999999887654443
Q ss_pred cCCCcceeeeEEEEeccCCC----------cccCCcc----------cch---HHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGG----------YLADTPG----------FNQ---PSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~----------~l~Dtpg----------~~~---~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.. ....+..++|+... ++-..|. +.. ..+..++...-.+. ....||.|||
T Consensus 79 ~A----~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~---~v~~Lsiaqr 151 (500)
T COG1129 79 DA----LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT---LVGDLSIAQR 151 (500)
T ss_pred HH----HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhh---hhhhCCHHHH
Confidence 21 12345556655221 1111121 111 11222222111222 3348999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh---hhhhhhcccccccccccccCccccc
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF---QLRTFGTKREGDVRYKVGDMGVQQA 338 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (391)
|.++||+|+ ..+++++|+| +....+.+++++++++.+.-. ..+...+-.+...++-+..+|..-+
T Consensus 152 Q~VeIArAl-~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 152 QMVEIARAL-SFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred HHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 999999999 7799999999 456788899999999866433 2223333333444444555555443
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-20 Score=175.98 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=99.7
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCccee--
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT-- 223 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~tt-- 223 (391)
..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|. +..+.+..+.....|
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~------------~p~~G~I~~~g~-~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL------------SPTVGKVDRNGE-VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCE-EeEEecccCCCCCCcHH
Confidence 45799999999 99999999999999999999999999 999999999885 222222222111111
Q ss_pred eeEEEEeccCCCcc-cCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHH
Q 016339 224 RHVSLLPLSGGGYL-ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWER 296 (391)
Q Consensus 224 r~i~~v~~~~~~~l-~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~ 296 (391)
.++.+. ....+.. .+........+..+++....+..+. .||+||+||++||+|+ +.+|+++|+| |+..
T Consensus 104 enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~Gq~qrv~Laral-~~~p~iLlLDEPt~gLD~~~ 178 (264)
T PRK13546 104 ENIEFK-MLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVK---KYSSGMRAKLGFSINI-TVNPDILVIDEALSVGDQTF 178 (264)
T ss_pred HHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcc---cCCHHHHHHHHHHHHH-hhCCCEEEEeCccccCCHHH
Confidence 111100 0000000 0000001112334455555666666 9999999999999999 9999999999 8888
Q ss_pred HHHHHHHHHHHHH
Q 016339 297 YQYYFQLLDEIRI 309 (391)
Q Consensus 297 ~~~~~~ll~el~~ 309 (391)
...+.+++.++..
T Consensus 179 ~~~l~~~L~~~~~ 191 (264)
T PRK13546 179 AQKCLDKIYEFKE 191 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999988854
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-19 Score=186.94 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=108.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-cccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~~ 214 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.+++ ..++.+++
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~~~~~i~~~~q 71 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL------------EPSAGNVSLDPNERLGKLRQ 71 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecCCCEEEEEec
Confidence 578899998888999999999 89999999999999999999999999 89999999976 34666666
Q ss_pred ccCCCccee--eeEEEEecc-----------CCC-ccc--------------------CCcccchHHHHhCChhHHh-hh
Q 016339 215 KSGRGKHTT--RHVSLLPLS-----------GGG-YLA--------------------DTPGFNQPSLLKVTKQSLA-QT 259 (391)
Q Consensus 215 ~~~~~~~tt--r~i~~v~~~-----------~~~-~l~--------------------Dtpg~~~~~l~~~~~~~l~-~~ 259 (391)
.+......| .++.+.... ... ... +........+..+++.... +.
T Consensus 72 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 151 (530)
T PRK15064 72 DQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYG 151 (530)
T ss_pred cCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcC
Confidence 443322221 111100000 000 000 0000111234445554322 34
Q ss_pred chhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 260 ~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
.+. .|||||+||++||+++ +.+|+++|+| |+.....+.++|.+
T Consensus 152 ~~~---~LSgGq~qrv~lA~aL-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 200 (530)
T PRK15064 152 LMS---EVAPGWKLRVLLAQAL-FSNPDILLLDEPTNNLDINTIRWLEDVLNE 200 (530)
T ss_pred chh---hcCHHHHHHHHHHHHH-hcCCCEEEEcCCCcccCHHHHHHHHHHHHh
Confidence 456 9999999999999999 9999999999 88888888888754
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-19 Score=190.73 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=112.4
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-ccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-~v~~v~~ 214 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|++++. .++.+++
T Consensus 327 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~------------~p~~G~i~~~~~~~i~~v~q 394 (556)
T PRK11819 327 AENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE------------QPDSGTIKIGETVKLAYVDQ 394 (556)
T ss_pred EEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCceEEEEEeC
Confidence 456778888888999999999 89999999999999999999999999 999999998542 4666666
Q ss_pred cc-CCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEE
Q 016339 215 KS-GRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290 (391)
Q Consensus 215 ~~-~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~ll 290 (391)
.. ...+..| .++.+.. .... ...........+..+++. ...+..+. .|||||+||++||+++ +.+|+++|
T Consensus 395 ~~~~~~~~~tv~e~l~~~~-~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgG~~qrv~la~al-~~~p~lll 468 (556)
T PRK11819 395 SRDALDPNKTVWEEISGGL-DIIK-VGNREIPSRAYVGRFNFKGGDQQKKVG---VLSGGERNRLHLAKTL-KQGGNVLL 468 (556)
T ss_pred chhhcCCCCCHHHHHHhhc-cccc-ccccHHHHHHHHHhCCCChhHhcCchh---hCCHHHHHHHHHHHHH-hcCCCEEE
Confidence 53 2222222 2222110 0000 000000112345556664 34567777 9999999999999999 99999999
Q ss_pred ec------CHHHHHHHHHHHHHHH
Q 016339 291 KG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 291 lD------D~~~~~~~~~ll~el~ 308 (391)
+| |+.....+.++|.++.
T Consensus 469 LDEPt~~LD~~~~~~l~~~l~~~~ 492 (556)
T PRK11819 469 LDEPTNDLDVETLRALEEALLEFP 492 (556)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhCC
Confidence 99 8899999999998863
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-19 Score=161.82 Aligned_cols=147 Identities=19% Similarity=0.272 Sum_probs=111.5
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCccee
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~tt 223 (391)
....+++.|||++ +|++++|+|.||||||||.++|+|.. .|++|+|.|+|+....-. +....
T Consensus 24 ~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi------------~PTsG~il~n~~~L~~~D-----y~~R~ 86 (267)
T COG4167 24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI------------EPTSGEILINDHPLHFGD-----YSFRS 86 (267)
T ss_pred hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc------------CCCCceEEECCccccccc-----hHhhh
Confidence 3456899999999 89999999999999999999999999 999999999998764321 11134
Q ss_pred eeEEEEeccCCC---------cccCCccc----------ch---HHHHhCCh-hHHhhhchhHHhhcCcccccccccccc
Q 016339 224 RHVSLLPLSGGG---------YLADTPGF----------NQ---PSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 224 r~i~~v~~~~~~---------~l~Dtpg~----------~~---~~l~~~~~-~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
+++.++|++.+. .+.|.|-. .+ ..+..+++ .+.++.+|. .||.||+|||++|||
T Consensus 87 k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~---~la~~QKQRVaLARA 163 (267)
T COG4167 87 KRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH---MLAPGQKQRVALARA 163 (267)
T ss_pred hheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchh---hcCchhHHHHHHHHH
Confidence 667788887432 12333221 11 12333443 345677788 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHHHh
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIREE 312 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~ 312 (391)
+ +.+|.++|.| |.....++.+++-++.++..
T Consensus 164 L-IL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~G 200 (267)
T COG4167 164 L-ILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200 (267)
T ss_pred H-hcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhC
Confidence 9 9999999999 67788888999988876543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-19 Score=190.36 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=112.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-ccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-~v~~v~~ 214 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|++++. .++.+++
T Consensus 325 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~G~i~~~~~~~i~~v~q 392 (552)
T TIGR03719 325 AENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE------------QPDSGTIKIGETVKLAYVDQ 392 (552)
T ss_pred EeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCeEEEECCceEEEEEeC
Confidence 356788888888999999999 89999999999999999999999999 999999998543 4666666
Q ss_pred cc-CCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhH-HhhhchhHHhhcCcccccccccccccccCCCcEEE
Q 016339 215 KS-GRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS-LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290 (391)
Q Consensus 215 ~~-~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~-l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~ll 290 (391)
.+ ...+..| .++.+.. ...+ ...........+..+++.. ..+..+. .|||||+||++||+++ +.+|+++|
T Consensus 393 ~~~~~~~~~tv~e~l~~~~-~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGe~qrv~la~al-~~~p~lll 466 (552)
T TIGR03719 393 SRDALDPNKTVWEEISGGL-DIIQ-LGKREVPSRAYVGRFNFKGSDQQKKVG---QLSGGERNRVHLAKTL-KSGGNVLL 466 (552)
T ss_pred CccccCCCCcHHHHHHhhc-cccc-cCcchHHHHHHHHhCCCChhHhcCchh---hCCHHHHHHHHHHHHH-hhCCCEEE
Confidence 53 1222222 2221110 0000 0000001123455566643 4566777 9999999999999999 99999999
Q ss_pred ec------CHHHHHHHHHHHHHHH
Q 016339 291 KG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 291 lD------D~~~~~~~~~ll~el~ 308 (391)
+| |+.....+.++|.++.
T Consensus 467 LDEPt~~LD~~~~~~l~~~l~~~~ 490 (552)
T TIGR03719 467 LDEPTNDLDVETLRALEEALLEFA 490 (552)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHCC
Confidence 99 8899999999999873
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-19 Score=208.85 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=121.7
Q ss_pred cCCeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.|++|+++|... .+|++|||.| +|+.+||||+||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 1309 I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~------------~p~~G~I~IDG~di~~ 1376 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV------------EVCGGEIRVNGREIGA 1376 (1560)
T ss_pred EEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEccc
Confidence 5589999999653 4999999999 89999999999999999999999999 9999999999999987
Q ss_pred cccccCCCcceeeeEEEEecc---CCCcccCC--c--ccch----HHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLS---GGGYLADT--P--GFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt--p--g~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
++... .++.+++++|+ +.+.+.++ | ...+ ..+..+++.+.....|. -...||||||
T Consensus 1377 i~l~~-----LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1377 YGLRE-----LRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred CCHHH-----HHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 76543 46789999998 33444333 2 1222 23444555554444332 2247999999
Q ss_pred cccccccccccCC-CcEEEec------CHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGE-PGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 273 qr~~iaralh~~e-P~~lllD------D~~~~~~~~~ll~el 307 (391)
||++||||+ +.+ |+++|+| |.+.-..+.+.|.+.
T Consensus 1452 QrLaLARAL-L~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~ 1492 (1560)
T PTZ00243 1452 QLMCMARAL-LKKGSGFILMDEATANIDPALDRQIQATVMSA 1492 (1560)
T ss_pred HHHHHHHHH-hcCCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999 885 8999999 888888888888775
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-19 Score=192.04 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=110.1
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-ccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~ 211 (391)
+.+++++++|+ +..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.+++ ..++.
T Consensus 7 l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~------------~p~~G~i~~~~~~~i~~ 74 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD------------KEFEGEARPAPGIKVGY 74 (556)
T ss_pred EEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecCCCEEEE
Confidence 34678999998 778999999999 89999999999999999999999999 89999998863 45666
Q ss_pred cccccCCCccee--eeEEEEeccCCC----c------ccCC--------------------------cccchHHHHhCCh
Q 016339 212 VSTKSGRGKHTT--RHVSLLPLSGGG----Y------LADT--------------------------PGFNQPSLLKVTK 253 (391)
Q Consensus 212 v~~~~~~~~~tt--r~i~~v~~~~~~----~------l~Dt--------------------------pg~~~~~l~~~~~ 253 (391)
+++.+...++.| .++.+....... + .... .......+..+++
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 666544333322 222110000000 0 0000 0000112223333
Q ss_pred hHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 254 ~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
.. .+..+. .|||||+||++||+++ +.+|+++|+| |+.....+.++|.++.
T Consensus 155 ~~-~~~~~~---~LSgGqkqrv~la~al-~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~ 210 (556)
T PRK11819 155 PP-WDAKVT---KLSGGERRRVALCRLL-LEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP 210 (556)
T ss_pred Cc-ccCchh---hcCHHHHHHHHHHHHH-hCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC
Confidence 21 345555 8999999999999999 9999999999 8889999989888763
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-19 Score=209.43 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=120.4
Q ss_pred CeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+++++++|++ ..++++|||.+ +|++++|+||||||||||+++|+|+. .|++|+|+++|.++..-.
T Consensus 1940 v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll------------~ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1940 LNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT------------TVTSGDATVAGKSILTNI 2007 (2272)
T ss_pred EEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC------------CCCccEEEECCEECcchH
Confidence 5788999985 57999999999 89999999999999999999999999 999999999998764211
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ...+.++++++....+ ..++ .+. ....+..+++.+..++.+. .||||||||
T Consensus 2008 ~------~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~---~LSGGqKqR 2078 (2272)
T TIGR01257 2008 S------DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAG---TYSGGNKRK 2078 (2272)
T ss_pred H------HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChh---hCCHHHHHH
Confidence 0 1234577777763221 1111 111 1123455677777788787 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++++| |+...+.+++++.+++++
T Consensus 2079 LslA~AL-i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~ 2119 (2272)
T TIGR01257 2079 LSTAIAL-IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE 2119 (2272)
T ss_pred HHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 999999999999998654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-19 Score=208.05 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=123.1
Q ss_pred hcCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 134 ~~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+.|++++++|.. ..+|++|||.+ +|+.+||||+||||||||+++|.|++ +|++|+|.++|.++.
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~------------~~~~G~I~IdG~dI~ 1351 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN------------ESAEGEIIIDGLNIA 1351 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------cCCCCeEEECCEEcc
Confidence 3567999999965 36999999999 89999999999999999999999999 999999999999998
Q ss_pred ccccccCCCcceeeeEEEEecc---CCCcccCCc----ccchH----HHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLS---GGGYLADTP----GFNQP----SLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dtp----g~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.++... .++++++++|+ +.+.+.++- ...+. .+..+++.+....+|. ....|||||
T Consensus 1352 ~i~~~~-----LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQ 1426 (1522)
T TIGR00957 1352 KIGLHD-----LRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQ 1426 (1522)
T ss_pred ccCHHH-----HHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHH
Confidence 877543 56778999988 334444442 12222 2334454444433332 224799999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|||++||||+ +.+|+++|+| |.+....+.+.|++..
T Consensus 1427 rQrl~LARAL-Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~ 1468 (1522)
T TIGR00957 1427 RQLVCLARAL-LRKTKILVLDEATAAVDLETDNLIQSTIRTQF 1468 (1522)
T ss_pred HHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 9999999999 9999999999 8888888888887653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-19 Score=194.08 Aligned_cols=153 Identities=14% Similarity=0.121 Sum_probs=108.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-ccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-~v~~v~~ 214 (391)
+++++++|++..+++++||.| +|++++|+||||||||||+++|+|+. .|++|+|.+++. .++.+++
T Consensus 4 i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~------------~pd~G~I~~~~~~~i~~~~q 71 (638)
T PRK10636 4 FSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI------------SADGGSYTFPGNWQLAWVNQ 71 (638)
T ss_pred EEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecCCCEEEEEec
Confidence 578999999999999999999 89999999999999999999999998 899999998875 3444444
Q ss_pred ccCCCcceeeeEEEEeccCCC------------------c---c---cCC-c-----ccchHHHHhCChh-HHhhhchhH
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG------------------Y---L---ADT-P-----GFNQPSLLKVTKQ-SLAQTFPEI 263 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~------------------~---l---~Dt-p-----g~~~~~l~~~~~~-~l~~~~p~~ 263 (391)
...... ...+.++++.... . + .+. . ......+..+++. ...+..+.
T Consensus 72 ~~~~~~--~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~- 148 (638)
T PRK10636 72 ETPALP--QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS- 148 (638)
T ss_pred CCCCCC--CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh-
Confidence 211100 0111111111000 0 0 000 0 0112234455553 34555666
Q ss_pred HhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 264 ~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
.|||||+||++||+++ +.+|+++|+| |+.....+.++|.++
T Consensus 149 --~LSgGerqRv~LA~aL-~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~ 195 (638)
T PRK10636 149 --DFSGGWRMRLNLAQAL-ICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY 195 (638)
T ss_pred --hcCHHHHHHHHHHHHH-ccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC
Confidence 9999999999999999 9999999999 888888888888765
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-19 Score=180.74 Aligned_cols=161 Identities=13% Similarity=0.174 Sum_probs=117.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+..+++.|+...+.++|||.+ +|++.||+|.||||||||+|+|.|++ .|++|+|+++|+.+..-++
T Consensus 6 ~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~------------~P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 6 EMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY------------QPDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred EEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc------------cCCcceEEECCEEeccCCH
Confidence 3467899999999999999999 99999999999999999999999999 9999999999998866555
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC------ccc---chHHHHhCChhHHhhhc-----hh-HHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT------PGF---NQPSLLKVTKQSLAQTF-----PE-IKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt------pg~---~~~~l~~~~~~~l~~~~-----p~-~~~~LSgGq~qr~ 275 (391)
... ..-.+++++|.|... +.++ +.. ....-..-.+..+.+.| |+ ....||-|||||+
T Consensus 74 ~dA----~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRV 149 (501)
T COG3845 74 RDA----IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRV 149 (501)
T ss_pred HHH----HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHH
Confidence 432 234577777764321 1111 000 00000000111121111 11 2238999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.|-+|| ..+|+++|+| .|...+.++++++.++++...
T Consensus 150 EIlKaL-yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~t 192 (501)
T COG3845 150 EILKAL-YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKT 192 (501)
T ss_pred HHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 999999 9999999999 567889999999998877665
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-19 Score=175.12 Aligned_cols=148 Identities=22% Similarity=0.290 Sum_probs=116.8
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
..++++||+++ +|++++|||.||||||||=.+|.+++ .+. |.|+|+|+++...+.+. .+..++.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~------------~s~-G~I~F~G~~i~~~~~~~--mrplR~~ 364 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI------------PSQ-GEIRFDGQDIDGLSRKE--MRPLRRR 364 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc------------CcC-ceEEECCccccccChhh--hhhhhhh
Confidence 46899999999 89999999999999999999999997 444 99999999997766532 2335678
Q ss_pred EEEEeccCCCcc---------------cCCcccc--------hHHHHhCChh-HHhhhchhHHhhcCccccccccccccc
Q 016339 226 VSLLPLSGGGYL---------------ADTPGFN--------QPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCL 281 (391)
Q Consensus 226 i~~v~~~~~~~l---------------~Dtpg~~--------~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaral 281 (391)
++.+||+.-+.+ ...|... ...+..+++. ...++||+ ++||||+||++||||+
T Consensus 365 mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh---EFSGGQRQRIAIARAl 441 (534)
T COG4172 365 MQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH---EFSGGQRQRIAIARAL 441 (534)
T ss_pred ceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc---ccCcchhhHHHHHHHH
Confidence 899999833221 1112221 2234455553 45789999 9999999999999999
Q ss_pred ccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 282 HLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 282 h~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+.+|.++++| |..-..+++++|++|.++...
T Consensus 442 -iLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~L 478 (534)
T COG4172 442 -ILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL 478 (534)
T ss_pred -hcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999 667889999999999877655
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-19 Score=191.37 Aligned_cols=153 Identities=17% Similarity=0.129 Sum_probs=108.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec-Ccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~-g~~v~~v~~ 214 (391)
+++++++|++..++++++|.+ +|++++|+||||||||||+++|+|+. .|++|+|.++ +..++++++
T Consensus 315 ~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~------------~p~~G~i~~~~~~~igy~~Q 382 (638)
T PRK10636 315 MEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL------------APVSGEIGLAKGIKLGYFAQ 382 (638)
T ss_pred EEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEECCCEEEEEecC
Confidence 356778888888999999999 99999999999999999999999999 9999999986 345666655
Q ss_pred ccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEEec-
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG- 292 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD- 292 (391)
.... ..+.....+..................+..+++. ...+..+. .|||||+||++||+++ +.+|+++|+|
T Consensus 383 ~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~---~LSgGekqRl~La~~l-~~~p~lLlLDE 456 (638)
T PRK10636 383 HQLE--FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETR---RFSGGEKARLVLALIV-WQRPNLLLLDE 456 (638)
T ss_pred cchh--hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchh---hCCHHHHHHHHHHHHH-hcCCCEEEEcC
Confidence 3210 0000000000000000000011112334455553 34566677 9999999999999999 9999999999
Q ss_pred -----CHHHHHHHHHHHHHH
Q 016339 293 -----DWERYQYYFQLLDEI 307 (391)
Q Consensus 293 -----D~~~~~~~~~ll~el 307 (391)
|+.....+.++|.++
T Consensus 457 Pt~~LD~~~~~~l~~~L~~~ 476 (638)
T PRK10636 457 PTNHLDLDMRQALTEALIDF 476 (638)
T ss_pred CCCCCCHHHHHHHHHHHHHc
Confidence 889999999999886
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-19 Score=155.79 Aligned_cols=138 Identities=17% Similarity=0.288 Sum_probs=106.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++++..+...-|.++|++| +|+++.|+||||||||||+..+.|.+.+. -.-+|+++++++++..++.
T Consensus 5 l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~---------F~~~G~~~l~~~~l~~lPa- 74 (213)
T COG4136 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ---------FSCTGELWLNEQRLDMLPA- 74 (213)
T ss_pred eeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccC---------cceeeEEEECCeeccccch-
Confidence 466777777777889999999 99999999999999999999999998321 2347999999998877664
Q ss_pred cCCCcceeeeEEEEeccCCCc----cc---------CCcc-----cchHHHHhCChhHHhhhchhHHhhcCccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LA---------DTPG-----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~---------Dtpg-----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
..|++++++|+.-.+ +. +..| .....+...++.++.+.+|+ +|||||+-|+++
T Consensus 75 ------~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~---tlSGGQrARvaL 145 (213)
T COG4136 75 ------AQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA---TLSGGQRARVAL 145 (213)
T ss_pred ------hhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh---hcCcchHHHHHH
Confidence 245666666652110 11 1112 12345667788888999999 999999999999
Q ss_pred ccccccCCCcEEEecCH
Q 016339 278 NNCLHLGEPGCVVKGDW 294 (391)
Q Consensus 278 aralh~~eP~~lllDD~ 294 (391)
-|++ +.+|+.+++|.|
T Consensus 146 ~R~L-la~Pk~lLLDEP 161 (213)
T COG4136 146 LRAL-LAQPKALLLDEP 161 (213)
T ss_pred HHHH-HhCcceeeeCCc
Confidence 9999 999999999954
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-19 Score=179.54 Aligned_cols=150 Identities=23% Similarity=0.258 Sum_probs=115.0
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceee
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr 224 (391)
++..++++||.+ +|+.++||||||||||||.++|.|.+ .|++|.|++||.++..-.... .-+
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w------------~p~~G~VRLDga~l~qWd~e~-----lG~ 410 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW------------PPTSGSVRLDGADLRQWDREQ-----LGR 410 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc------------ccCCCcEEecchhhhcCCHHH-----hcc
Confidence 347899999999 89999999999999999999999999 999999999998886555432 446
Q ss_pred eEEEEecc---CCCcccCCcc-cc--------hHHHHhCChhHHhhhchhHH--------hhcCcccccccccccccccC
Q 016339 225 HVSLLPLS---GGGYLADTPG-FN--------QPSLLKVTKQSLAQTFPEIK--------EMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 225 ~i~~v~~~---~~~~l~Dtpg-~~--------~~~l~~~~~~~l~~~~p~~~--------~~LSgGq~qr~~iaralh~~ 284 (391)
+++|++|+ +.|.+.++-. |. -+.....+..++.-.+|.-. ..||||||||+++|||+ ..
T Consensus 411 hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl-YG 489 (580)
T COG4618 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL-YG 489 (580)
T ss_pred ccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH-cC
Confidence 77888887 3344433311 11 11112234455555665533 37999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 285 EPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+|.++|+| |.+....+.+.|.+++.+.-.
T Consensus 490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~ 524 (580)
T COG4618 490 DPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGT 524 (580)
T ss_pred CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCE
Confidence 99999999 778888888888888876544
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-19 Score=184.14 Aligned_cols=143 Identities=13% Similarity=0.176 Sum_probs=104.9
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeE
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i 226 (391)
.+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+... ...+.+
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~------------~p~~G~I~~~g~~i~~~~~~~----~~~~~i 329 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL------------PRTSGYVTLDGHEVVTRSPQD----GLANGI 329 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCCCCHHH----HHHCCC
Confidence 4689999999 89999999999999999999999999 999999999997664321100 012345
Q ss_pred EEEeccCC---C----cccCCc------------c---------cchHHHHhCChh-HHhhhchhHHhhcCccccccccc
Q 016339 227 SLLPLSGG---G----YLADTP------------G---------FNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 227 ~~v~~~~~---~----~l~Dtp------------g---------~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
+++++... . .+.++- + .....+..+++. ...+.++. .|||||+||++|
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGekqrv~l 406 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG---LLSGGNQQKVAI 406 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh---hCCHHHHHHHHH
Confidence 66655421 0 010000 0 011223444552 34566666 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 407 A~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 444 (501)
T PRK10762 407 ARGL-MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444 (501)
T ss_pred HHHH-hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC
Confidence 9999 9999999999 889999999999998653
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=147.88 Aligned_cols=141 Identities=28% Similarity=0.365 Sum_probs=103.3
Q ss_pred cccccceeEEEEEecCCCC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcC-CeeEEEEcCCccch
Q 016339 73 PVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSVESKLGL 150 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~-~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g-~~~v~~s~~~~~~L 150 (391)
.+.++|.++.|..+..|.. ....+.++|.. ...++|+++|+||+|+.++++...|...+.+.. +..+.+|..++.++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~ 83 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGK 83 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccH
Confidence 5689999999999988743 36678888864 245699999999999998887777877776532 23455676666666
Q ss_pred HHHhhcc----------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCc
Q 016339 151 DSLLQRL----------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220 (391)
Q Consensus 151 ~~ls~~i----------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~ 220 (391)
+.+.-.+ .+..++++|+||+|||||||+|.|... ..+ +..++
T Consensus 84 ~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~----------------------~~~---~~~~g--- 135 (157)
T cd01858 84 GSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV----------------------CKV---APIPG--- 135 (157)
T ss_pred HHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc----------------------eee---CCCCC---
Confidence 5544333 134568999999999999999998751 112 22233
Q ss_pred ceeeeEEEEeccCCCcccCCccc
Q 016339 221 HTTRHVSLLPLSGGGYLADTPGF 243 (391)
Q Consensus 221 ~ttr~i~~v~~~~~~~l~Dtpg~ 243 (391)
+|++..++.+..+.+++||||+
T Consensus 136 -~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 136 -ETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred -eeEeEEEEEcCCCEEEEECcCC
Confidence 6777888887766789999985
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-19 Score=205.15 Aligned_cols=158 Identities=13% Similarity=0.179 Sum_probs=112.5
Q ss_pred hcCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec-Ccc
Q 016339 134 TWGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQR 208 (391)
Q Consensus 134 ~~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~-g~~ 208 (391)
.+.++++.++|++ ..+|+++||.+ +|++++|+||||||||||+++|+|++ +|++|+|+++ |.+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~------------~p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY------------DPTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc------------cCCCCeEEEeCCcc
Confidence 4667899999975 35999999999 89999999999999999999999999 9999999994 565
Q ss_pred ccccccccCCCcceeeeEEEEeccCCC---cccCCc--------------------------------------------
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTP-------------------------------------------- 241 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dtp-------------------------------------------- 241 (391)
+...... +..+++++++|+... .+.++-
T Consensus 450 i~~~~~~-----~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1466)
T PTZ00265 450 LKDINLK-----WWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLND 524 (1466)
T ss_pred hhhCCHH-----HHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhh
Confidence 5433221 123445555554211 111110
Q ss_pred ------------------cc----chHHHHhCChhHHhhhchh--------HHhhcCcccccccccccccccCCCcEEEe
Q 016339 242 ------------------GF----NQPSLLKVTKQSLAQTFPE--------IKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (391)
Q Consensus 242 ------------------g~----~~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~qr~~iaralh~~eP~~lll 291 (391)
.. ....+..+++.+....+|. ....|||||+||++||||+ +.+|+++|+
T Consensus 525 ~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAl-l~~P~ILlL 603 (1466)
T PTZ00265 525 MSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI-IRNPKILIL 603 (1466)
T ss_pred cccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHH-hcCCCEEEE
Confidence 00 0111222333343333332 1237999999999999999 999999999
Q ss_pred c------CHHHHHHHHHHHHHHHH
Q 016339 292 G------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 292 D------D~~~~~~~~~ll~el~~ 309 (391)
| |+.....+.+.|.++..
T Consensus 604 DEpTSaLD~~se~~i~~~L~~~~~ 627 (1466)
T PTZ00265 604 DEATSSLDNKSEYLVQKTINNLKG 627 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhh
Confidence 9 88999999999998864
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-19 Score=187.85 Aligned_cols=155 Identities=16% Similarity=0.127 Sum_probs=107.3
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-cccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v 212 (391)
.+++++++|+ +..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.+++ ..++.+
T Consensus 6 ~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~------------~p~~G~i~~~~~~~i~~v 73 (552)
T TIGR03719 6 TMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD------------KEFNGEARPAPGIKVGYL 73 (552)
T ss_pred EEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecCCCEEEEE
Confidence 3578999997 677999999999 89999999999999999999999999 89999998864 346666
Q ss_pred ccccCCCccee--eeEEEEeccCCCc------c---cCCc-c--------------------------cchHHHHhCChh
Q 016339 213 STKSGRGKHTT--RHVSLLPLSGGGY------L---ADTP-G--------------------------FNQPSLLKVTKQ 254 (391)
Q Consensus 213 ~~~~~~~~~tt--r~i~~v~~~~~~~------l---~Dtp-g--------------------------~~~~~l~~~~~~ 254 (391)
++.+....+.| .++.+......+. . ...+ . .....+..+++.
T Consensus 74 ~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 153 (552)
T TIGR03719 74 PQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP 153 (552)
T ss_pred eccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC
Confidence 66554333322 2221100000000 0 0000 0 000111122221
Q ss_pred HHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 255 ~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
. .+..+. .|||||+||++||+++ +.+|+++|+| |+.....+.++|.++
T Consensus 154 ~-~~~~~~---~LSgGqkqrv~la~al-~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~ 207 (552)
T TIGR03719 154 P-WDADVT---KLSGGERRRVALCRLL-LSKPDMLLLDEPTNHLDAESVAWLEQHLQEY 207 (552)
T ss_pred c-ccCchh---hcCHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCChHHHHHHHHHHHhC
Confidence 1 234455 8999999999999999 9999999999 888888888888775
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-19 Score=208.23 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=119.8
Q ss_pred cCCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.+.|+ +..+++++++.+ +|++++|+|||||||||||++|+|+. .|++|+|+++|.++..
T Consensus 929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl------------~PtsG~I~i~G~dI~~ 996 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL------------PPTSGTVLVGGKDIET 996 (2272)
T ss_pred EEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC------------CCCceEEEECCEECcc
Confidence 34578889995 467999999999 99999999999999999999999999 9999999999987742
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
-.. ...++++++++....+ +.++ .+. ....+..+++.+..+..+. .||||||
T Consensus 997 ~~~------~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~---~LSGGqK 1067 (2272)
T TIGR01257 997 NLD------AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQ---DLSGGMQ 1067 (2272)
T ss_pred hHH------HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHH
Confidence 110 1235577777763221 1111 111 1223556677777777787 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||+|+ +.+|+++|+| |+...+.++++|.+++
T Consensus 1068 QRLsLArAL-i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~ 1108 (2272)
T TIGR01257 1068 RKLSVAIAF-VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108 (2272)
T ss_pred HHHHHHHHH-HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 8999999999999985
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-19 Score=164.12 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=94.8
Q ss_pred cc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCC
Q 016339 156 RL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234 (391)
Q Consensus 156 ~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~ 234 (391)
.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.. ..+.++++++...
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~----------~~~~i~~v~q~~~ 59 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLI------------PPAKGTVKVAGASPGK----------GWRHIGYVPQRHE 59 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCccchH----------hhCcEEEeccccc
Confidence 34 79999999999999999999999999 9999999999975421 0123444443311
Q ss_pred C------cccCC--------------c-----ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEE
Q 016339 235 G------YLADT--------------P-----GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCV 289 (391)
Q Consensus 235 ~------~l~Dt--------------p-----g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~l 289 (391)
. .+.++ + ......+..+++....+..+. .||+||+||++||+|+ +.+|+++
T Consensus 60 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~laral-~~~p~ll 135 (223)
T TIGR03771 60 FAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG---ELSGGQRQRVLVARAL-ATRPSVL 135 (223)
T ss_pred ccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh---hCCHHHHHHHHHHHHH-hcCCCEE
Confidence 1 00000 0 011222444555555666676 8999999999999999 9999999
Q ss_pred Eec------CHHHHHHHHHHHHHHHHH
Q 016339 290 VKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 290 llD------D~~~~~~~~~ll~el~~~ 310 (391)
|+| |+.....+.+++.++..+
T Consensus 136 ilDEP~~~LD~~~~~~l~~~l~~~~~~ 162 (223)
T TIGR03771 136 LLDEPFTGLDMPTQELLTELFIELAGA 162 (223)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 999 889999999999998653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-19 Score=183.95 Aligned_cols=144 Identities=14% Similarity=0.147 Sum_probs=102.6
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+... ...+.
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~~~~----~~~~~ 324 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR------------EKSAGTITLHGKKINNHNANE----AINHG 324 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC------------cCCccEEEECCEECCCCCHHH----HHHCC
Confidence 35899999999 89999999999999999999999999 999999999987664322110 00112
Q ss_pred EEEEeccCC-------Ccc-----cC-------Ccc---------cchHHHHhCChh-HHhhhchhHHhhcCcccccccc
Q 016339 226 VSLLPLSGG-------GYL-----AD-------TPG---------FNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 226 i~~v~~~~~-------~~l-----~D-------tpg---------~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
++++++... ..+ .+ ..+ .....+..+++. ...+..|. .||||||||++
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGq~qrv~ 401 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG---SLSGGNQQKVI 401 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc---cCCcHHHHHHH
Confidence 333332210 000 00 000 011223344442 34566677 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+++ +.+|+++|+| |+.....+.+++.++...
T Consensus 402 la~al-~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~ 440 (491)
T PRK10982 402 IGRWL-LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK 440 (491)
T ss_pred HHHHH-hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC
Confidence 99999 9999999999 889999999999998754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-19 Score=184.39 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=103.0
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeE
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i 226 (391)
.+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++....... .....+
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~------------~p~~G~i~~~g~~~~~~~~~~----~~~~~i 330 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT------------RRTAGQVYLDGKPIDIRSPRD----AIRAGI 330 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC------------cCCCceEEECCEECCCCCHHH----HHhCCC
Confidence 4789999999 99999999999999999999999999 999999999987653211000 011223
Q ss_pred EEEeccCC---C----cccCC------c-----c----------cchHHHHhCCh-hHHhhhchhHHhhcCccccccccc
Q 016339 227 SLLPLSGG---G----YLADT------P-----G----------FNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 227 ~~v~~~~~---~----~l~Dt------p-----g----------~~~~~l~~~~~-~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
+++++... . .+.++ + + .....+..+++ .+..++.+. .||||||||++|
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGq~qrl~l 407 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM---NLSGGNQQKAIL 407 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc---cCCHHHHHHHHH
Confidence 34333210 0 00000 0 0 01123344555 244566677 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+++ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 408 a~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 445 (501)
T PRK11288 408 GRWL-SEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445 (501)
T ss_pred HHHH-ccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC
Confidence 9999 9999999999 889999999999998754
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-19 Score=190.24 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=119.4
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++++++|.. ..++++++|++ +|++++|+||||||||||+++|+|+. +|++|++.++|.++.
T Consensus 6 ~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~i~ 73 (648)
T PRK10535 6 ELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD------------KPTSGTYRVAGQDVA 73 (648)
T ss_pred EEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEcC
Confidence 45788899953 36899999999 99999999999999999999999999 999999999998776
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
..+.... .....+.+++++++...+ +.++ .+. ....+..+++.+..+..|. .||+||
T Consensus 74 ~~~~~~~-~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~---~LS~Gq 149 (648)
T PRK10535 74 TLDADAL-AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPS---QLSGGQ 149 (648)
T ss_pred cCCHHHH-HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcc---cCCHHH
Confidence 5432110 000124577777764321 1111 011 1122334566666677777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+++|+|+ +.+|+++|+| |+...+.+.+++.+++++
T Consensus 150 ~qrv~LAraL-~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~ 193 (648)
T PRK10535 150 QQRVSIARAL-MNGGQVILADEPTGALDSHSGEEVMAILHQLRDR 193 (648)
T ss_pred HHHHHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 889999999999998653
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-19 Score=169.76 Aligned_cols=149 Identities=17% Similarity=0.144 Sum_probs=101.9
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++++. ...+++++||.+ +|++++|+||||||||||+++|+|++ +|++|+|.++| .++.+++.
T Consensus 42 i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~------------~p~~G~I~i~g-~i~yv~q~ 106 (282)
T cd03291 42 FSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL------------EPSEGKIKHSG-RISFSSQF 106 (282)
T ss_pred EEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECC-EEEEEeCc
Confidence 4556554 456999999999 89999999999999999999999999 99999999987 46677765
Q ss_pred cCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhH--------HhhcCcccccccccccccccCCC
Q 016339 216 SGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI--------KEMLKANEPAKCSFNNCLHLGEP 286 (391)
Q Consensus 216 ~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~--------~~~LSgGq~qr~~iaralh~~eP 286 (391)
+..++.+. .++.+.. .. . .......+..+++.+....+|.. ...||+||+||++||+|+ +.+|
T Consensus 107 ~~l~~~tv~enl~~~~-----~~-~-~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL-~~~p 178 (282)
T cd03291 107 SWIMPGTIKENIIFGV-----SY-D-EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAV-YKDA 178 (282)
T ss_pred ccccccCHHHHhhccc-----cc-C-HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHH-hcCC
Confidence 43332211 2221100 00 0 00001112223334433333321 138999999999999999 9999
Q ss_pred cEEEec------CHHHHHHHHHH-HHHHH
Q 016339 287 GCVVKG------DWERYQYYFQL-LDEIR 308 (391)
Q Consensus 287 ~~lllD------D~~~~~~~~~l-l~el~ 308 (391)
+++|+| |+.....+.+. +.++.
T Consensus 179 ~iLiLDEPt~gLD~~~~~~l~~~ll~~~~ 207 (282)
T cd03291 179 DLYLLDSPFGYLDVFTEKEIFESCVCKLM 207 (282)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHhh
Confidence 999999 78888877764 44543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.4e-19 Score=188.71 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=107.3
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-ccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVSTK 215 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~~~ 215 (391)
++++++|++..+++++||.+ +|++++|+|||||||||||++|+|+. +|++|+|+++. ..++.+++.
T Consensus 323 ~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~------------~p~~G~i~~~~~~~i~y~~q~ 390 (635)
T PRK11147 323 ENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL------------QADSGRIHCGTKLEVAYFDQH 390 (635)
T ss_pred eeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECCCcEEEEEeCc
Confidence 56788898888999999999 89999999999999999999999999 99999999842 235666654
Q ss_pred c-CCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEEe
Q 016339 216 S-GRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (391)
Q Consensus 216 ~-~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lll 291 (391)
. ...++.| .++.+... .....+........+..++.. ...+..+. .|||||+||++||+++ +.+|+++|+
T Consensus 391 ~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGekqRl~la~al-~~~p~lLlL 464 (635)
T PRK11147 391 RAELDPEKTVMDNLAEGKQ--EVMVNGRPRHVLGYLQDFLFHPKRAMTPVK---ALSGGERNRLLLARLF-LKPSNLLIL 464 (635)
T ss_pred ccccCCCCCHHHHHHhhcc--cccccchHHHHHHHHHhcCCCHHHHhChhh---hCCHHHHHHHHHHHHH-hcCCCEEEE
Confidence 2 1222222 11111000 000000001112223344442 34566666 9999999999999999 999999999
Q ss_pred c------CHHHHHHHHHHHHHH
Q 016339 292 G------DWERYQYYFQLLDEI 307 (391)
Q Consensus 292 D------D~~~~~~~~~ll~el 307 (391)
| |+.....+.+++.++
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~ 486 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSY 486 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhC
Confidence 9 888888888888775
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=144.69 Aligned_cols=133 Identities=32% Similarity=0.391 Sum_probs=102.5
Q ss_pred ccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccch
Q 016339 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L 150 (391)
..++++|.+++|+++..|... ...+.+++.... .++++++|+||+|+.++++...|...+.+.+++.+.+|..++..
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~- 84 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA- 84 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc-
Confidence 467899999999999888543 347788886432 58999999999999988777788888888888888888765432
Q ss_pred HHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEe
Q 016339 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP 230 (391)
Q Consensus 151 ~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~ 230 (391)
.++++|+||+|||||+|.|.+... ..++..++ +|++...+.
T Consensus 85 ----------~~~~~G~~~vGKstlin~l~~~~~-------------------------~~~~~~~~----~~~~~~~~~ 125 (141)
T cd01857 85 ----------TIGLVGYPNVGKSSLINALVGKKK-------------------------VSVSATPG----KTKHFQTIF 125 (141)
T ss_pred ----------EEEEECCCCCCHHHHHHHHhCCCc-------------------------eeeCCCCC----cccceEEEE
Confidence 799999999999999999998651 12333344 345555666
Q ss_pred ccCCCcccCCcccch
Q 016339 231 LSGGGYLADTPGFNQ 245 (391)
Q Consensus 231 ~~~~~~l~Dtpg~~~ 245 (391)
.+.+.++.||||+..
T Consensus 126 ~~~~~~i~DtpG~~~ 140 (141)
T cd01857 126 LTPTITLCDCPGLVF 140 (141)
T ss_pred eCCCEEEEECCCcCC
Confidence 665678999999864
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-19 Score=183.21 Aligned_cols=143 Identities=19% Similarity=0.269 Sum_probs=103.6
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeE
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i 226 (391)
.+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+... .....+
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~i~~~~~~~----~~~~~i 340 (510)
T PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR------------PARGGRIMLNGKEINALSTAQ----RLARGL 340 (510)
T ss_pred CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCcEEEECCEECCCCCHHH----HHhCCc
Confidence 3689999999 89999999999999999999999999 899999999987654322110 011234
Q ss_pred EEEeccC---CCc----ccCC--------------cc----cchHHHHhCChh-HHhhhchhHHhhcCcccccccccccc
Q 016339 227 SLLPLSG---GGY----LADT--------------PG----FNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 227 ~~v~~~~---~~~----l~Dt--------------pg----~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
+++++.. +.+ +.++ +. .....+..+++. ...+..+. .|||||+||++||+|
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgG~kqrl~la~a 417 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR---TLSGGNQQKVLIAKC 417 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc---cCCcHHHHHHHHHHH
Confidence 5555431 000 0000 00 011223445554 44566666 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 418 l-~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~ 452 (510)
T PRK15439 418 L-EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ 452 (510)
T ss_pred H-hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC
Confidence 9 9999999999 889999999999998764
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-18 Score=156.87 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=106.8
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceee
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr 224 (391)
.+.+|++++++| +|+++.++|.||||||||+|+|+|.. .|++|.|.++|.+|...+.... ..
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l------------~~t~G~I~Idg~dVtk~~~~~R-----A~ 80 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL------------KPTSGQILIDGVDVTKKSVAKR-----AN 80 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc------------ccCCceEEECceecccCCHHHH-----hh
Confidence 356899999999 99999999999999999999999999 9999999999999876665321 11
Q ss_pred eEEEEeccCC------Cc------ccCCc----ccch-----------HHHH--hCChhHHhhhchhHHhhcCccccccc
Q 016339 225 HVSLLPLSGG------GY------LADTP----GFNQ-----------PSLL--KVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 225 ~i~~v~~~~~------~~------l~Dtp----g~~~-----------~~l~--~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.++-++|+.. .. +.+.. |+.. ..+. ..+++..++.... .|||||||-+
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig---lLSGGQRQal 157 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG---LLSGGQRQAL 157 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh---hccchHHHHH
Confidence 2222333310 00 11111 1110 0111 2233444444444 8999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+++.|. ++.|+++++| ||.....++++-.++.++.+.
T Consensus 158 sL~MAt-l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~kl 200 (263)
T COG1101 158 SLLMAT-LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200 (263)
T ss_pred HHHHHh-cCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCC
Confidence 999999 9999999999 999999999999988766544
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-18 Score=187.22 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=104.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc-ccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR-VGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~-v~~v~ 213 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.+++.. ++.++
T Consensus 5 ~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~------------~p~~G~I~~~~~~~~~~l~ 72 (635)
T PRK11147 5 SIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV------------LLDDGRIIYEQDLIVARLQ 72 (635)
T ss_pred EEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCeEEEeCCCCEEEEec
Confidence 4578999999888999999999 89999999999999999999999999 9999999987632 33433
Q ss_pred cccCCCcceeeeEEEEeccC--CC----------------cccC-----------------------CcccchHHHHhCC
Q 016339 214 TKSGRGKHTTRHVSLLPLSG--GG----------------YLAD-----------------------TPGFNQPSLLKVT 252 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~--~~----------------~l~D-----------------------tpg~~~~~l~~~~ 252 (391)
+.+.. .....+++.. +. ...+ ........+..++
T Consensus 73 q~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 73 QDPPR-----NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG 147 (635)
T ss_pred cCCCC-----CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence 32110 0000000000 00 0000 0000111222333
Q ss_pred hhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 253 ~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+. .+..+. .|||||+||++||+++ +.+|+++|+| |+.....+.++|.++.
T Consensus 148 l~--~~~~~~---~LSgGekqRv~LAraL-~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~ 203 (635)
T PRK11147 148 LD--PDAALS---SLSGGWLRKAALGRAL-VSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ 203 (635)
T ss_pred CC--CCCchh---hcCHHHHHHHHHHHHH-hcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC
Confidence 32 234455 8999999999999999 9999999999 8889998888888763
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-18 Score=154.42 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=92.2
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceee
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr 224 (391)
...+++++||++ +|++++|+||||||||||||+|.+ ++|++.+++... .. ...
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----------------~~G~v~~~~~~~----~~------~~~ 60 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----------------ASGKARLISFLP----KF------SRN 60 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----------------cCCcEEECCccc----cc------ccc
Confidence 456899999999 899999999999999999999853 256676654311 00 112
Q ss_pred eEEEEeccCCCcccCCcccchHHHHhCChhHH-hhhchhHHhhcCcccccccccccccccCC--CcEEEec------CHH
Q 016339 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEIKEMLKANEPAKCSFNNCLHLGE--PGCVVKG------DWE 295 (391)
Q Consensus 225 ~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l-~~~~p~~~~~LSgGq~qr~~iaralh~~e--P~~lllD------D~~ 295 (391)
.+.++++ ...+..+++... .+..+. .||+||+||++||+|+ +.+ |+++|+| |+.
T Consensus 61 ~~~~~~q-------------~~~l~~~~L~~~~~~~~~~---~LSgGq~qrl~laral-~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 61 KLIFIDQ-------------LQFLIDVGLGYLTLGQKLS---TLSGGELQRVKLASEL-FSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred cEEEEhH-------------HHHHHHcCCCccccCCCcC---cCCHHHHHHHHHHHHH-hhCCCCCEEEEeCCcccCCHH
Confidence 3444443 244566666543 566677 9999999999999999 999 9999999 888
Q ss_pred HHHHHHHHHHHHHH
Q 016339 296 RYQYYFQLLDEIRI 309 (391)
Q Consensus 296 ~~~~~~~ll~el~~ 309 (391)
..+.+.+++.++.+
T Consensus 124 ~~~~l~~~l~~~~~ 137 (176)
T cd03238 124 DINQLLEVIKGLID 137 (176)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-18 Score=198.41 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=121.7
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.|++|+++|.. ..+|+++||.| +|+.+||+|+||||||||+++|+|++ + .+|+|.++|.++..
T Consensus 1218 I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~------------~-~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL------------S-TEGEIQIDGVSWNS 1284 (1490)
T ss_pred EEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc------------C-CCcEEEECCEEccc
Confidence 457999999964 57999999999 89999999999999999999999998 6 78999999999987
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC--cc--cc----hHHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT--PG--FN----QPSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt--pg--~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
++... .++.+++++|+. .+.+.++ |. .. ...+..+++.+.....|. ....|||||+
T Consensus 1285 i~~~~-----lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1285 VTLQT-----WRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred CCHHH-----HHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 76543 567899999983 3444433 21 12 223445555554444442 1236999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |.+....+++.|.+..
T Consensus 1360 QrL~LARAL-Lr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~ 1400 (1490)
T TIGR01271 1360 QLMCLARSI-LSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF 1400 (1490)
T ss_pred HHHHHHHHH-hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 999999999 9999999999 8888888888887753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-18 Score=183.65 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=110.2
Q ss_pred eEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcce-----------ec
Q 016339 139 PLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------FE 205 (391)
Q Consensus 139 ~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~-----------~~ 205 (391)
.++++|+.. .+|++|+ .+ +|++++|+||||||||||+++|+|++ .|++|+|. |+
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l------------~p~~G~i~~~~~~~~~~~~~~ 144 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL------------IPNLGDYEEEPSWDEVLKRFR 144 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc------------cCCCccccCCCcHHHHHHHhC
Confidence 467889864 6899999 67 89999999999999999999999999 99999997 88
Q ss_pred CccccccccccCCCc-ceeeeEEEEeccC---CCcccC------CcccchHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 206 DQRVGEVSTKSGRGK-HTTRHVSLLPLSG---GGYLAD------TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 206 g~~v~~v~~~~~~~~-~ttr~i~~v~~~~---~~~l~D------tpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
|.++...+....... ......+++++.. .+.+.+ ..+.....+..+++....++.+. .|||||+||+
T Consensus 145 G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~---~LSgGe~qrv 221 (590)
T PRK13409 145 GTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDIS---ELSGGELQRV 221 (590)
T ss_pred ChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHHH
Confidence 877644322110000 0111122222211 111111 11122334555667666777777 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||+++ +.+|+++|+| |+.....+.+++.++.+
T Consensus 222 ~ia~al-~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~ 260 (590)
T PRK13409 222 AIAAAL-LRDADFYFFDEPTSYLDIRQRLNVARLIRELAE 260 (590)
T ss_pred HHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
Confidence 999999 9999999999 88999999999999865
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-18 Score=186.97 Aligned_cols=151 Identities=15% Similarity=0.196 Sum_probs=108.3
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC--CCCcceecCcccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEVST 214 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p--~~G~I~~~g~~v~~v~~ 214 (391)
+++.++|+++.+|+++|+.+ +|++++|+||||||||||+|+|+|.. +| .+|+|.++|.++..
T Consensus 72 ~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~------------~~~~~sG~I~inG~~~~~--- 136 (659)
T PLN03211 72 SDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI------------QGNNFTGTILANNRKPTK--- 136 (659)
T ss_pred ccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC------------CCCceeEEEEECCEECch---
Confidence 34566788888999999999 89999999999999999999999998 66 48999999976521
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCC---------cc-c--------chHHHHhCChhHHhhhchh--HHhhcCcc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADT---------PG-F--------NQPSLLKVTKQSLAQTFPE--IKEMLKAN 270 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dt---------pg-~--------~~~~l~~~~~~~l~~~~p~--~~~~LSgG 270 (391)
. ..+.+++++++... .+.++ |. . .+..+..+++.+..+.... ....||||
T Consensus 137 ~------~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgG 210 (659)
T PLN03211 137 Q------ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGG 210 (659)
T ss_pred h------hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChh
Confidence 0 12345666655211 11111 10 0 1112333444443322110 12279999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+||++||+++ +.+|+++++| |......+.++|.++.++
T Consensus 211 erqRv~ia~aL-~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~ 255 (659)
T PLN03211 211 ERKRVSIAHEM-LINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255 (659)
T ss_pred hhhHHHHHHHH-HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 889999999999998753
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-18 Score=155.65 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=115.1
Q ss_pred CCeeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.++++.++..++ .+|++||+++ +|++.+|+||||||||||.++|+|... +++++|+|.|+|+++..++
T Consensus 5 ~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~----------Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 5 EIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK----------YEVTEGEILFDGEDILELS 74 (251)
T ss_pred EEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC----------ceEecceEEECCcccccCC
Confidence 357888999885 9999999999 899999999999999999999999862 3889999999999998887
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCCcccchH--------------------------HHHhCChhH-HhhhchhHHhh
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP--------------------------SLLKVTKQS-LAQTFPEIKEM 266 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~--------------------------~l~~~~~~~-l~~~~p~~~~~ 266 (391)
.... ....+.+.+|. ..+.||.... .+..+++.. +++++ +..-
T Consensus 75 ~~ER----Ar~GifLafQ~----P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~--vN~G 144 (251)
T COG0396 75 PDER----ARAGIFLAFQY----PVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERY--VNEG 144 (251)
T ss_pred HhHH----HhcCCEEeecC----CccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcc--cCCC
Confidence 6532 23444444443 1122222111 111222221 22221 2236
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+||||++|..|+..+ +.+|+++|+| |....+.+-+.+.+++...
T Consensus 145 FSGGEkKR~EilQ~~-~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~ 194 (251)
T COG0396 145 FSGGEKKRNEILQLL-LLEPKLAILDEPDSGLDIDALKIVAEGINALREEG 194 (251)
T ss_pred cCcchHHHHHHHHHH-hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCC
Confidence 899999999999999 9999999999 7888888888888887653
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.1e-19 Score=173.52 Aligned_cols=124 Identities=21% Similarity=0.303 Sum_probs=95.4
Q ss_pred EEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc----ccC
Q 016339 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY----LAD 239 (391)
Q Consensus 164 LvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~----l~D 239 (391)
|+||||||||||+++|+|+. +|++|+|.++|.++...+. ..++++++++....+ +.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~------------~p~~G~I~i~g~~i~~~~~-------~~~~i~~v~q~~~l~~~~tv~e 61 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE------------QPDSGSIMLDGEDVTNVPP-------HLRHINMVFQSYALFPHMTVEE 61 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC------------CCCceEEEECCEECCCCCH-------HHCCEEEEecCccccCCCcHHH
Confidence 68999999999999999999 9999999999987643322 134577777764322 111
Q ss_pred Cc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHH
Q 016339 240 TP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQ 298 (391)
Q Consensus 240 tp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~ 298 (391)
+- +. ....+..+++..+.+++|. .|||||+||++||||+ +.+|+++|+| |+....
T Consensus 62 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~qRvalaraL-~~~p~lllLDEP~s~LD~~~~~ 137 (325)
T TIGR01187 62 NVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH---QLSGGQQQRVALARAL-VFKPKILLLDEPLSALDKKLRD 137 (325)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChh---hCCHHHHHHHHHHHHH-HhCCCEEEEeCCCccCCHHHHH
Confidence 11 11 1123445566666777787 9999999999999999 9999999999 889999
Q ss_pred HHHHHHHHHHHH
Q 016339 299 YYFQLLDEIRIR 310 (391)
Q Consensus 299 ~~~~ll~el~~~ 310 (391)
.+.++|.++.++
T Consensus 138 ~l~~~l~~l~~~ 149 (325)
T TIGR01187 138 QMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-18 Score=185.10 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=109.6
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-ccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~ 211 (391)
+.+++++++|. +..+++++||++ +|++++|+||||||||||+++|+|++ +|++|+|.+++ ..++.
T Consensus 452 i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~------------~~~~G~i~~~~~~~i~~ 519 (659)
T TIGR00954 452 IKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW------------PVYGGRLTKPAKGKLFY 519 (659)
T ss_pred EEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEeecCCCcEEE
Confidence 45788999885 447999999999 89999999999999999999999999 89999998864 34666
Q ss_pred cccccCCCccee-eeEEEEeccCCCcccCCccc----chHHHHhCChhHHhhhch------hHHhhcCcccccccccccc
Q 016339 212 VSTKSGRGKHTT-RHVSLLPLSGGGYLADTPGF----NQPSLLKVTKQSLAQTFP------EIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 212 v~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~----~~~~l~~~~~~~l~~~~p------~~~~~LSgGq~qr~~iara 280 (391)
+++.+.....+- .++.+.. .... . ..++. ....+..+++.++.+..+ +-...|||||+||++|||+
T Consensus 520 v~Q~~~l~~~tv~eni~~~~-~~~~-~-~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 520 VPQRPYMTLGTLRDQIIYPD-SSED-M-KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred ECCCCCCCCcCHHHHHhcCC-Chhh-h-hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 777654433321 2332210 0000 0 00111 123344556655544421 0113899999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
+ +++|+++|+| |+.....+.+++.+
T Consensus 597 l-~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 597 F-YHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred H-HcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9 9999999999 78888777777655
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-18 Score=187.07 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=104.0
Q ss_pred CeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-cccccc
Q 016339 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-~v~~v~ 213 (391)
+++++++|++ ..+++++||.+ +|++++|+|||||||||||++|+|+. +|++|+|.+++. .++.++
T Consensus 511 ~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll------------~p~~G~I~~~~~~~igyv~ 578 (718)
T PLN03073 511 FSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL------------QPSSGTVFRSAKVRMAVFS 578 (718)
T ss_pred EEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCceEEECCceeEEEEe
Confidence 3567788854 46899999999 89999999999999999999999999 999999988653 355555
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEEec
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD 292 (391)
+........+.+..+... ..+...........+..+++. ...+..+. .|||||+||++||+++ +.+|+++|+|
T Consensus 579 Q~~~~~l~~~~~~~~~~~--~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~---~LSgGqkqRvaLAraL-~~~p~lLLLD 652 (718)
T PLN03073 579 QHHVDGLDLSSNPLLYMM--RCFPGVPEQKLRAHLGSFGVTGNLALQPMY---TLSGGQKSRVAFAKIT-FKKPHILLLD 652 (718)
T ss_pred ccccccCCcchhHHHHHH--HhcCCCCHHHHHHHHHHCCCChHHhcCCcc---ccCHHHHHHHHHHHHH-hcCCCEEEEc
Confidence 432100000000000000 000000011122345556664 35566677 9999999999999999 9999999999
Q ss_pred ------CHHHHHHHHHHHHHH
Q 016339 293 ------DWERYQYYFQLLDEI 307 (391)
Q Consensus 293 ------D~~~~~~~~~ll~el 307 (391)
|+.....+.+.+.+.
T Consensus 653 EPT~~LD~~s~~~l~~~L~~~ 673 (718)
T PLN03073 653 EPSNHLDLDAVEALIQGLVLF 673 (718)
T ss_pred CCCCCCCHHHHHHHHHHHHHc
Confidence 777777776666543
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-18 Score=162.08 Aligned_cols=146 Identities=13% Similarity=0.108 Sum_probs=103.8
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceee
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr 224 (391)
...++.+|||+| +|++++++|||||||||+|++|.|++ .|++|.|.++|...-.-.+. .-+
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll------------~p~~G~v~V~G~~Pf~~~~~------~~~ 97 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL------------LPTSGKVRVNGKDPFRRREE------YLR 97 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc------------ccCCCeEEecCcCcchhHHH------HHH
Confidence 345899999999 89999999999999999999999999 99999999998653220000 011
Q ss_pred eEEEEeccCCCc---------------ccCCccc--c---hHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC
Q 016339 225 HVSLLPLSGGGY---------------LADTPGF--N---QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 225 ~i~~v~~~~~~~---------------l~Dtpg~--~---~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~ 284 (391)
++++++-...+. +++.|.. . ....+.++++........ .||-|||.||.+|.+| ++
T Consensus 98 ~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr---~LSlGqRmraeLaaaL-Lh 173 (325)
T COG4586 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVR---KLSLGQRMRAELAAAL-LH 173 (325)
T ss_pred HHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhh---hccchHHHHHHHHHHh-cC
Confidence 122211111111 2222221 1 111223455555555455 8999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 285 EPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.|+++++| |......+.+++++.++..+.
T Consensus 174 ~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~a 208 (325)
T COG4586 174 PPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA 208 (325)
T ss_pred CCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCc
Confidence 99999999 788999999999999877654
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-18 Score=168.20 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=119.3
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.-|.++.+.|. ...+|.++||.+ .|++++++||||+||||++++|.+++ ++.+|.|.++|+++..+
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy------------D~~sG~I~id~qdir~v 330 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY------------DVNSGSITIDGQDIRDV 330 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh------------CCcCceEEEcchhHHHh
Confidence 44678888885 557999999999 89999999999999999999999999 99999999999999877
Q ss_pred ccccCCCcceeeeEEEEeccCCC---ccc-----CCcccchH----HHHhCChhHHhhhchhHHh--------hcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGG---YLA-----DTPGFNQP----SLLKVTKQSLAQTFPEIKE--------MLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~---~l~-----Dtpg~~~~----~l~~~~~~~l~~~~p~~~~--------~LSgGq~ 272 (391)
.+.. .++.++++||+.-. ++. -.|..... ..+...+.++...+|+..+ .||||||
T Consensus 331 tq~s-----lR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggek 405 (497)
T COG5265 331 TQQS-----LRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK 405 (497)
T ss_pred HHHH-----HHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchH
Confidence 6653 56778888887221 111 11222222 2233344555566666443 6899999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++|||++ +.+|.++++| |....+.++..|+++.
T Consensus 406 qrvaiar~i-lk~p~il~~deatsaldt~te~~iq~~l~~~~ 446 (497)
T COG5265 406 QRVAIARTI-LKNPPILILDEATSALDTHTEQAIQAALREVS 446 (497)
T ss_pred HHHHHHHHH-hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh
Confidence 999999999 9999999999 5666677777777765
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-18 Score=160.39 Aligned_cols=174 Identities=14% Similarity=0.104 Sum_probs=110.2
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
.+....+|+||||++ +|+.++|||+||||||||+++|+|.+ +|++|+|.+.|.-..-+.-..+.-+.
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~------------~Pt~G~v~v~G~v~~li~lg~Gf~pe 103 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY------------KPTSGKVKVTGKVAPLIELGAGFDPE 103 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc------------CCCCceEEEcceEehhhhcccCCCcc
Confidence 445567999999999 99999999999999999999999999 99999999987533222222222222
Q ss_pred ee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------C
Q 016339 222 TT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------D 293 (391)
Q Consensus 222 tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D 293 (391)
+| +|+.+..+-.|..-.+.....+..++-.++.++.+..-. .+|-||+-|++|+-++ ..+|+|+|+| |
T Consensus 104 lTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~Pvk---tYSSGM~aRLaFsia~-~~~pdILllDEvlavGD 179 (249)
T COG1134 104 LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVK---TYSSGMYARLAFSVAT-HVEPDILLLDEVLAVGD 179 (249)
T ss_pred cchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchh---hccHHHHHHHHHhhhh-hcCCCEEEEehhhhcCC
Confidence 33 333222211121111111112222222234445555444 8999999999999999 7899999999 6
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhhhh----ccccccccccccc
Q 016339 294 WERYQYYFQLLDEIRIREEF-QLRTFG----TKREGDVRYKVGD 332 (391)
Q Consensus 294 ~~~~~~~~~ll~el~~~~~~-~~~~~~----~~~~~~~~~~~~~ 332 (391)
+.-++.-.+.+.++.++... .+.+++ ...|.+..+...+
T Consensus 180 ~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 180 AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHG 223 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCC
Confidence 66666666667776444433 222222 2345555554433
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-18 Score=151.21 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=111.4
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-----ccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-----RVG 210 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-----~v~ 210 (391)
+..++++|+...+.++|||.+ +|++.+|||.||||||||+++|++.. .|++|+|.+.-. ++-
T Consensus 9 V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl------------~p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 9 VSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL------------TPDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred ehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc------------CCCCCeEEEEcCCCCchhHh
Confidence 456778899999999999999 99999999999999999999999999 999999987531 222
Q ss_pred ccccccCCCcceeeeEEEEeccC----------CCcccCC--------cc-c---chHHHHhCChh-HHhhhchhHHhhc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG----------GGYLADT--------PG-F---NQPSLLKVTKQ-SLAQTFPEIKEML 267 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~----------~~~l~Dt--------pg-~---~~~~l~~~~~~-~l~~~~p~~~~~L 267 (391)
.+++.. +..-.++..+++.|+. ++.+-+. -| + ...++..+++. .-.+..|. .+
T Consensus 77 ~msEae-RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~Pr---tF 152 (258)
T COG4107 77 TMSEAE-RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPR---TF 152 (258)
T ss_pred hhchHH-HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCccc---cc
Confidence 223221 1111223445555541 1111110 00 1 12234444443 22345676 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
||||+||+.|||-+ +..|.++++| |..-...+++++..+..+.
T Consensus 153 SGGMqQRLQiARnL-Vt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l 201 (258)
T COG4107 153 SGGMQQRLQIARNL-VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL 201 (258)
T ss_pred chHHHHHHHHHHHh-ccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhc
Confidence 99999999999999 9999999999 7788899999999887554
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-18 Score=152.86 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=108.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-ccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~ 213 (391)
..+.+++||++..+|+++||.+ .|+.-+||||||+||||++-.|.|.. .|+.|+++|+| .++...+
T Consensus 7 ~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt------------rp~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 7 YLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT------------RPQEGEVLFDGDTDLTKLP 74 (249)
T ss_pred EEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC------------CCCcceEEEcCchhhccCC
Confidence 3478999999999999999999 99999999999999999999999999 99999999998 6665444
Q ss_pred cc----cCCCcceeeeEEEEe----cc------CCCc---------ccCCcccchHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 214 TK----SGRGKHTTRHVSLLP----LS------GGGY---------LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~----~~~~~~ttr~i~~v~----~~------~~~~---------l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
.. .|.++....-..+-. .+ .... ..+.....+..+...++.+..+.... .||.|
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~---~LSHG 151 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA---LLSHG 151 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh---hhccc
Confidence 32 122221110000000 00 0000 00001122333445555555555444 99999
Q ss_pred cccccccccccccCCCcEEEecCH------HHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllDD~------~~~~~~~~ll~el~~ 309 (391)
|+|++.|++.+ +.+|.++++|.| +.....-+++..++.
T Consensus 152 qKQwLEIGMll-~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~ 195 (249)
T COG4674 152 QKQWLEIGMLL-AQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG 195 (249)
T ss_pred hhhhhhhheee-ccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc
Confidence 99999999999 999999999933 445566677777654
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-16 Score=137.04 Aligned_cols=135 Identities=30% Similarity=0.389 Sum_probs=99.8
Q ss_pred ceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHh-cCCeeEEEEcCCccchHHHhh
Q 016339 78 DHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-WGYEPLFCSVESKLGLDSLLQ 155 (391)
Q Consensus 78 D~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~-~g~~~v~~s~~~~~~L~~ls~ 155 (391)
|.+++|+.+..|... ...+.+ ..+...++|+++|+||+|++++++...|...++. +++..+.+|..++.+++.+.-
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 788899998877443 233342 3446678999999999999988777778655654 456778999988877776544
Q ss_pred cc------------------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccC
Q 016339 156 RL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (391)
Q Consensus 156 ~i------------------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~ 217 (391)
.+ .+..++++|.+|+|||||+|.|.+... .. .+
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~----------------------~~-------~~ 129 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLK----------------------LK-------VG 129 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccc----------------------cc-------cc
Confidence 22 467899999999999999999999761 11 23
Q ss_pred CCcceeeeEEEEeccCCCcccCCccc
Q 016339 218 RGKHTTRHVSLLPLSGGGYLADTPGF 243 (391)
Q Consensus 218 ~~~~ttr~i~~v~~~~~~~l~Dtpg~ 243 (391)
.++++|+....+....+.+++||||+
T Consensus 130 ~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 130 NVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred CCCCcccceEEEEecCCEEEEECCCC
Confidence 34558877777777666679999985
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-17 Score=149.96 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=110.1
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
++++++-+....+.+++|.+ .|+.+.|.||||+||||||++|+|+. .|++|+|++++..+.......
T Consensus 6 ~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl------------~p~~G~v~~~~~~i~~~~~~~ 73 (209)
T COG4133 6 ENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL------------RPDAGEVYWQGEPIQNVRESY 73 (209)
T ss_pred hhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc------------CCCCCeEEecCCCCccchhhH
Confidence 45566667778899999999 99999999999999999999999999 999999999987776554321
Q ss_pred -----------CCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCccccccccccccccc
Q 016339 217 -----------GRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 217 -----------~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~ 283 (391)
+..+..| +|..|... +.+. . +.......+..+++..+.+.... +||-|||+|+++||.. +
T Consensus 74 ~~~l~yLGH~~giK~eLTa~ENL~F~~~-~~~~-~-~~~~i~~Al~~vgL~g~~dlp~~---~LSAGQqRRvAlArL~-l 146 (209)
T COG4133 74 HQALLYLGHQPGIKTELTALENLHFWQR-FHGS-G-NAATIWEALAQVGLAGLEDLPVG---QLSAGQQRRVALARLW-L 146 (209)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHH-HhCC-C-chhhHHHHHHHcCcccccccchh---hcchhHHHHHHHHHHH-c
Confidence 1111111 11111110 1111 0 11223355677888888887777 9999999999999999 9
Q ss_pred CCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 284 GEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 284 ~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
..+++-|+| |.+....+-.++.+-.
T Consensus 147 s~~pLWiLDEP~taLDk~g~a~l~~l~~~H~ 177 (209)
T COG4133 147 SPAPLWILDEPFTALDKEGVALLTALMAAHA 177 (209)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHHHh
Confidence 999999999 6677777666666533
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-17 Score=174.06 Aligned_cols=145 Identities=18% Similarity=0.128 Sum_probs=104.7
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC---CCCcceecCccccccccccCCCc
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGEVSTKSGRGK 220 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p---~~G~I~~~g~~v~~v~~~~~~~~ 220 (391)
+++.+|+++++.+ +|++++|+|||||||||||++|+|.. .| .+|+|.++|.++...
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~------------~~~~~~~G~i~~~g~~~~~~-------- 95 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS------------PKGVKGSGSVLLNGMPIDAK-------- 95 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCcceeEEEECCEECCHH--------
Confidence 4567999999999 89999999999999999999999987 55 479999999765310
Q ss_pred ceeeeEEEEeccCCC----cccC---------Ccc---------cchHHHHhCChhHHhhhchh---HHhhcCccccccc
Q 016339 221 HTTRHVSLLPLSGGG----YLAD---------TPG---------FNQPSLLKVTKQSLAQTFPE---IKEMLKANEPAKC 275 (391)
Q Consensus 221 ~ttr~i~~v~~~~~~----~l~D---------tpg---------~~~~~l~~~~~~~l~~~~p~---~~~~LSgGq~qr~ 275 (391)
...+.+++++++... .+.+ .|. .....+..+++.+..+.... ....||||||||+
T Consensus 96 ~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred HHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 012345555554211 1111 111 11223445555555555443 1236999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+++ +.+|+++++| |......+++.++++...
T Consensus 176 sia~aL-~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~ 215 (617)
T TIGR00955 176 AFASEL-LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK 215 (617)
T ss_pred HHHHHH-HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhC
Confidence 999999 9999999999 788999999999998754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.7e-17 Score=174.25 Aligned_cols=160 Identities=13% Similarity=0.073 Sum_probs=102.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|+++||.| +|++++|||||||||||||++|+|.... ..|+.|+|.+.++.+....
T Consensus 178 I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~---------g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAID---------GIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred EEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---------CCCCCCEEEEEeccCCCCC
Confidence 45688999999888999999999 8999999999999999999999997411 1578888876554321000
Q ss_pred --------c-ccCCCcceeeeEEEEeccC------------CCcccCCc------------------------ccchHHH
Q 016339 214 --------T-KSGRGKHTTRHVSLLPLSG------------GGYLADTP------------------------GFNQPSL 248 (391)
Q Consensus 214 --------~-~~~~~~~ttr~i~~v~~~~------------~~~l~Dtp------------------------g~~~~~l 248 (391)
. ...........+.++++.. .......+ ......+
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 0 0000000000011111100 00000000 0011122
Q ss_pred HhCChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 249 LKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 249 ~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
..+++. ...+..+. .|||||+||++||+++ +.+|+++|+| |+.....+.++|.++
T Consensus 329 ~~lgl~~~~~~~~~~---~LSgG~k~rv~LA~aL-~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~ 390 (718)
T PLN03073 329 AGLSFTPEMQVKATK---TFSGGWRMRIALARAL-FIEPDLLLLDEPTNHLDLHAVLWLETYLLKW 390 (718)
T ss_pred HHCCCChHHHhCchh---hCCHHHHHHHHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 233432 33455566 9999999999999999 9999999999 888988988888875
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-17 Score=186.88 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=112.7
Q ss_pred CCeeEEEEcC----CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~----~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.++++.++|. +..+|++||+.+ +|++++|+||||||||||+|+|+|+..++ .|++|+|.++|.++.
T Consensus 761 ~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g---------~~~~G~I~i~G~~~~ 831 (1394)
T TIGR00956 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTG---------VITGGDRLVNGRPLD 831 (1394)
T ss_pred EEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC---------CcceeEEEECCEECC
Confidence 3577788874 457999999999 89999999999999999999999998211 378999999998763
Q ss_pred ccccccCCCcceeeeEEEEeccCC----CcccCC---------cc-c--------chHHHHhCChhHHhhhchh-HHhhc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGG----GYLADT---------PG-F--------NQPSLLKVTKQSLAQTFPE-IKEML 267 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~----~~l~Dt---------pg-~--------~~~~l~~~~~~~l~~~~p~-~~~~L 267 (391)
. . ..+.+++++|+.. ..+.++ |. . .+..+..+++.+.++..+. -...|
T Consensus 832 ~---~------~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~L 902 (1394)
T TIGR00956 832 S---S------FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGL 902 (1394)
T ss_pred h---h------hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCC
Confidence 1 1 2345677776521 111111 10 0 1123344455555554432 01169
Q ss_pred CcccccccccccccccCCCc-EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPG-CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~-~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||||++||+++ +.+|+ ++++| |......++++|+++..+
T Consensus 903 SgGqrqRl~Ia~aL-~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~ 951 (1394)
T TIGR00956 903 NVEQRKRLTIGVEL-VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH 951 (1394)
T ss_pred CHHHhhHHHHHHHH-HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999999 99997 99999 889999999999998654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-17 Score=168.76 Aligned_cols=153 Identities=23% Similarity=0.202 Sum_probs=101.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-ccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~ 213 (391)
..++++++|+....++++++.+ +|+.+||||+|||||||||++|+|.. .|++|+|...+ ..++.++
T Consensus 5 ~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~------------~~~~G~i~~~~~~~v~~l~ 72 (530)
T COG0488 5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL------------EPDSGEVTRPKGLRVGYLS 72 (530)
T ss_pred EEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC------------cCCCCeEeecCCceEEEeC
Confidence 3578899999999999999999 99999999999999999999999999 99999998764 5788888
Q ss_pred cccCCCccee-ee-EEEEecc-------CCC-c--ccC--------------------CcccchHHHHhCChhHHhhhch
Q 016339 214 TKSGRGKHTT-RH-VSLLPLS-------GGG-Y--LAD--------------------TPGFNQPSLLKVTKQSLAQTFP 261 (391)
Q Consensus 214 ~~~~~~~~tt-r~-i~~v~~~-------~~~-~--l~D--------------------tpg~~~~~l~~~~~~~l~~~~p 261 (391)
|.+......| .. +...... ... + ..+ ........+..++.... +...
T Consensus 73 Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~ 151 (530)
T COG0488 73 QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPV 151 (530)
T ss_pred CCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCch
Confidence 7655433211 00 0000000 000 0 000 00001111222222222 2333
Q ss_pred hHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHH
Q 016339 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLD 305 (391)
Q Consensus 262 ~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~ 305 (391)
. .|||||+.|+++|++| ..+|+++++| |.+...-+-+.|.
T Consensus 152 ~---~LSGG~r~Rv~LA~aL-~~~pDlLLLDEPTNHLD~~~i~WLe~~L~ 197 (530)
T COG0488 152 S---SLSGGWRRRVALARAL-LEEPDLLLLDEPTNHLDLESIEWLEDYLK 197 (530)
T ss_pred h---hcCHHHHHHHHHHHHH-hcCCCEEEEcCCCcccCHHHHHHHHHHHH
Confidence 3 8999999999999999 9999999999 5554444444443
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-16 Score=184.45 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=107.2
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|++ ..+|+++|+.+ +|++++|+||||||||||+++|+|+. +|++|+|.++| .++.
T Consensus 637 i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~------------~~~~G~i~~~g-~i~y 703 (1522)
T TIGR00957 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM------------DKVEGHVHMKG-SVAY 703 (1522)
T ss_pred EEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------ccCCcEEEECC-EEEE
Confidence 556889999964 46899999999 99999999999999999999999999 99999999987 4777
Q ss_pred cccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhch--------hHHhhcCcccccccccccccc
Q 016339 212 VSTKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP--------EIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 212 v~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p--------~~~~~LSgGq~qr~~iaralh 282 (391)
++|.+.....+- .++.+. . ..+ +......+...++.+....+| +....||||||||++||||+
T Consensus 704 v~Q~~~l~~~Ti~eNI~~g-----~-~~~-~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl- 775 (1522)
T TIGR00957 704 VPQQAWIQNDSLRENILFG-----K-ALN-EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV- 775 (1522)
T ss_pred EcCCccccCCcHHHHhhcC-----C-ccC-HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH-
Confidence 877655433221 333221 0 011 111111222222222222222 12238999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
..+|+++++| |+.....+.+.+.+
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~ 805 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIG 805 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 9999999999 77788888777754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.6e-17 Score=142.49 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=99.4
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC--ccccccccccCCCc-cee
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED--QRVGEVSTKSGRGK-HTT 223 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g--~~v~~v~~~~~~~~-~tt 223 (391)
.+++++||.+ .||++++-||||+||||||++|.+-+ .|++|+|++.. ..+..+...+..-- -..
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY------------~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr 92 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY------------LPDEGQILVRHEGEWVDLVTAEPREVLEVRR 92 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc------------CCCCceEEEEeCcchhhhhccChHHHHHHHH
Confidence 4789999999 89999999999999999999999999 99999998742 22211111110000 001
Q ss_pred eeEEEEeccCC------------------CcccCC-cccchHHHHhCCh-hHHhhhchhHHhhcCccccccccccccccc
Q 016339 224 RHVSLLPLSGG------------------GYLADT-PGFNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 224 r~i~~v~~~~~------------------~~l~Dt-pg~~~~~l~~~~~-~~l~~~~p~~~~~LSgGq~qr~~iaralh~ 283 (391)
+.++|+.|... |.-.+. .......+..+.+ +.+...-|. .+|||||||+-|||.+ +
T Consensus 93 ~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa---TFSGGEqQRVNIaRgf-i 168 (235)
T COG4778 93 TTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPA---TFSGGEQQRVNIARGF-I 168 (235)
T ss_pred hhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc---ccCCchheehhhhhhh-h
Confidence 22344433210 000000 0011112333433 455666777 9999999999999999 8
Q ss_pred CCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 284 GEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 284 ~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
-+-.++++| |.....-+.+++.+-+.....
T Consensus 169 vd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaA 204 (235)
T COG4778 169 VDYPILLLDEPTASLDATNRAVVVELIREAKARGAA 204 (235)
T ss_pred ccCceEEecCCcccccccchHHHHHHHHHHHhcCce
Confidence 888899999 677888999999987765433
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-16 Score=183.77 Aligned_cols=152 Identities=16% Similarity=0.080 Sum_probs=103.8
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|.. ..+|+++|+.+ +|+.++|+||||||||||+++|+|+. +|++|.+..-...++
T Consensus 615 I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~------------~~~~G~i~~~~~~Ia 682 (1495)
T PLN03232 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL------------SHAETSSVVIRGSVA 682 (1495)
T ss_pred EEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------cccCCCEEEecCcEE
Confidence 557889999964 46899999999 89999999999999999999999999 888887643233456
Q ss_pred ccccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchh--------HHhhcCccccccccccccc
Q 016339 211 EVSTKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE--------IKEMLKANEPAKCSFNNCL 281 (391)
Q Consensus 211 ~v~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~qr~~iaral 281 (391)
.++|.+.....|- .|+.+. . -. ++......+...++.+....+|. ....||||||||++||||+
T Consensus 683 yv~Q~p~Lf~gTIreNI~fg-----~-~~-~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 683 YVPQVSWIFNATVRENILFG-----S-DF-ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred EEcCccccccccHHHHhhcC-----C-cc-CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 6666654443331 333221 0 00 11222233334444443344443 2237999999999999999
Q ss_pred ccCCCcEEEec------CHHHHHHHH-HHHHH
Q 016339 282 HLGEPGCVVKG------DWERYQYYF-QLLDE 306 (391)
Q Consensus 282 h~~eP~~lllD------D~~~~~~~~-~ll~e 306 (391)
..+|+++|+| |......+. +++..
T Consensus 756 -y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~ 786 (1495)
T PLN03232 756 -YSNSDIYIFDDPLSALDAHVAHQVFDSCMKD 786 (1495)
T ss_pred -hcCCCEEEEcCCccccCHHHHHHHHHHHhhh
Confidence 9999999999 556555554 44443
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-16 Score=184.53 Aligned_cols=153 Identities=17% Similarity=0.142 Sum_probs=108.6
Q ss_pred hcCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCC-CcceecCcc
Q 016339 134 TWGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL-GSKWFEDQR 208 (391)
Q Consensus 134 ~~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~-G~I~~~g~~ 208 (391)
.+.+++++++|.. ..+|+++|+.+ +|+.++|+||||||||||+++|+|.. +|++ |+|.+.+ .
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~------------~~~~GG~I~l~~-~ 680 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL------------PPRSDASVVIRG-T 680 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh------------ccCCCceEEEcC-e
Confidence 3567899999964 46899999999 89999999999999999999999999 8999 8998754 4
Q ss_pred ccccccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchh--------HHhhcCccccccccccc
Q 016339 209 VGEVSTKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE--------IKEMLKANEPAKCSFNN 279 (391)
Q Consensus 209 v~~v~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~qr~~iar 279 (391)
++.++|.+.....|- .|+.+. . -.| +......+...++.+....+|. ....||||||||++|||
T Consensus 681 Iayv~Q~p~LfngTIreNI~fg-----~-~~d-~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLAR 753 (1622)
T PLN03130 681 VAYVPQVSWIFNATVRDNILFG-----S-PFD-PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR 753 (1622)
T ss_pred EEEEcCccccCCCCHHHHHhCC-----C-ccc-HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHH
Confidence 667777665444332 333321 0 011 2222333444455444444443 22379999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHH-HHHHHH
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYF-QLLDEI 307 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~-~ll~el 307 (391)
|+ ..+|+++|+| |+.....+. +++..+
T Consensus 754 Al-y~~~~IlLLDEptSALD~~~~~~I~~~~l~~~ 787 (1622)
T PLN03130 754 AV-YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE 787 (1622)
T ss_pred HH-hCCCCEEEECCCccccCHHHHHHHHHHHhhHH
Confidence 99 9999999999 556555553 455443
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.8e-15 Score=129.77 Aligned_cols=144 Identities=31% Similarity=0.502 Sum_probs=102.7
Q ss_pred ccccccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCC
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES 146 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~ 146 (391)
++.+...+++|.+++|+.+..|... ...+.+++ ...++|+++|+||+|+.+......|.......+++.+.+|..+
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~---~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~ 80 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYV---LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE 80 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHH---HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence 3456778899999999998776432 33455444 4568999999999999876555555433445677889999988
Q ss_pred ccchHHHhhcc--------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCC
Q 016339 147 KLGLDSLLQRL--------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (391)
Q Consensus 147 ~~~L~~ls~~i--------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~ 218 (391)
+.+++.+.-.+ ....++++|.||+|||||+|.|.+... ..++...+
T Consensus 81 ~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~-------------------------~~~~~~~~- 134 (156)
T cd01859 81 RLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRHS-------------------------ASTSPSPG- 134 (156)
T ss_pred cccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCCc-------------------------cccCCCCC-
Confidence 88888766555 245789999999999999999987541 11122222
Q ss_pred CcceeeeEEEEeccCCCcccCCccc
Q 016339 219 GKHTTRHVSLLPLSGGGYLADTPGF 243 (391)
Q Consensus 219 ~~~ttr~i~~v~~~~~~~l~Dtpg~ 243 (391)
+|++..++..+.+.++.||||+
T Consensus 135 ---~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 135 ---YTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred ---eeeeeEEEEcCCCEEEEECcCC
Confidence 4555666666556678999985
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-15 Score=142.44 Aligned_cols=144 Identities=26% Similarity=0.386 Sum_probs=107.4
Q ss_pred ccccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCcc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~ 148 (391)
.+..++++|.++.|+.+..|... ...+.+++ .++++++|+||+|++++.+...|...+.+.++..+.+|..++.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 89 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGK 89 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 45578999999999998877443 34556655 3789999999999988776778887777677788999998887
Q ss_pred chHHHhhcc----c--------------CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 149 GLDSLLQRL----R--------------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 149 ~L~~ls~~i----~--------------Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+++.+...+ + .-.++++|.+|+|||||||.|.+... .
T Consensus 90 gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~-------------------------~ 144 (276)
T TIGR03596 90 GVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKV-------------------------A 144 (276)
T ss_pred cHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCc-------------------------c
Confidence 777764333 1 13589999999999999999998651 1
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccCCcccchHH
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~ 247 (391)
.++..++ +|+...++....+..+.||||+..+.
T Consensus 145 ~~~~~~g----~T~~~~~~~~~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 145 KVGNRPG----VTKGQQWIKLSDGLELLDTPGILWPK 177 (276)
T ss_pred ccCCCCC----eecceEEEEeCCCEEEEECCCcccCC
Confidence 2222233 67777777776566799999997553
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-15 Score=133.22 Aligned_cols=141 Identities=29% Similarity=0.444 Sum_probs=101.8
Q ss_pred cccccccccceeEEEEEecCCCCCH-HHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCc
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~-~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~ 147 (391)
..+..++|+|++++|+.+..|.... ..+..+ ..++++++|+||+|+.+++....|...+...+++.+.+|..++
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~-----~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 86 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNPLLEKI-----LGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSG 86 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCChhhHhH-----hcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCc
Confidence 3456789999999999988774432 222222 2478999999999998776666677777666778899999888
Q ss_pred cchHHHhhccc-----------------CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 148 LGLDSLLQRLR-----------------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 148 ~~L~~ls~~i~-----------------Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++.+...+. +-.++++|.+|+|||||+|.|.+... .
T Consensus 87 ~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~-------------------------~ 141 (171)
T cd01856 87 KGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKV-------------------------A 141 (171)
T ss_pred ccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCc-------------------------e
Confidence 88887765542 23799999999999999999998651 0
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccCCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~ 243 (391)
.++..++ +|....++....+..++||||+
T Consensus 142 ~~~~~~~----~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 142 KVGNKPG----VTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred eecCCCC----EEeeeEEEEecCCEEEEECCCC
Confidence 1122222 5666666665556679999996
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-16 Score=180.55 Aligned_cols=140 Identities=20% Similarity=0.178 Sum_probs=99.2
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCccee-e
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT-R 224 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~tt-r 224 (391)
..+|+++|+.+ +|++++|+|||||||||||++|+|+. +|++|+|.++| .++++++.+.....+- .
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~------------~~~~G~i~~~g-~iayv~Q~~~l~~~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL------------EPSEGKIKHSG-RISFSPQTSWIMPGTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECC-EEEEEeCCCccCCccHHH
Confidence 46899999999 89999999999999999999999999 99999999988 5778887765444321 3
Q ss_pred eEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhH--------HhhcCcccccccccccccccCCCcEEEec----
Q 016339 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI--------KEMLKANEPAKCSFNNCLHLGEPGCVVKG---- 292 (391)
Q Consensus 225 ~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~--------~~~LSgGq~qr~~iaralh~~eP~~lllD---- 292 (391)
++.+. .. .+. ......+...++......+|.. ...||||||||++||||+ ..+|+++|+|
T Consensus 506 NI~~g-~~-----~~~-~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl-~~~~~illLDep~s 577 (1490)
T TIGR01271 506 NIIFG-LS-----YDE-YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAV-YKDADLYLLDSPFT 577 (1490)
T ss_pred HHHhc-cc-----cch-HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHH-HcCCCEEEEeCCcc
Confidence 33321 10 110 0011122222333333333321 238999999999999999 9999999999
Q ss_pred --CHHHHHHHHH-HHHHH
Q 016339 293 --DWERYQYYFQ-LLDEI 307 (391)
Q Consensus 293 --D~~~~~~~~~-ll~el 307 (391)
|+.....+.+ ++.++
T Consensus 578 aLD~~~~~~i~~~~l~~~ 595 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKL 595 (1490)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 7777777776 45554
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-16 Score=178.80 Aligned_cols=145 Identities=13% Similarity=0.116 Sum_probs=104.7
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
..+|+++|+.+ +|++++|+||||||||||||+|+|...+ .+.+|+|.++|.+.... ...+.
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~----------g~~~G~I~inG~~~~~~--------~~~~~ 954 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG----------GYIEGDIRISGFPKKQE--------TFARI 954 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC----------CcccceEEECCccCChH--------Hhhhh
Confidence 46899999999 8999999999999999999999998721 14789999998754210 01234
Q ss_pred EEEEeccCCC----cccCC---------cc-c--------chHHHHhCChhHHhhhchhH--HhhcCccccccccccccc
Q 016339 226 VSLLPLSGGG----YLADT---------PG-F--------NQPSLLKVTKQSLAQTFPEI--KEMLKANEPAKCSFNNCL 281 (391)
Q Consensus 226 i~~v~~~~~~----~l~Dt---------pg-~--------~~~~l~~~~~~~l~~~~p~~--~~~LSgGq~qr~~iaral 281 (391)
+++++|.... .+.++ |. . .+..+..+++.+..+..+.. ...||||||||++||+++
T Consensus 955 igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL 1034 (1470)
T PLN03140 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVEL 1034 (1470)
T ss_pred eEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHH
Confidence 5666665211 11111 10 0 12234455666665554311 137999999999999999
Q ss_pred ccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 282 HLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 282 h~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+.+|+++++| |+.....++++|+++.+.
T Consensus 1035 -~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140 1035 -VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred -hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 9999999999 889999999999998754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-16 Score=177.40 Aligned_cols=150 Identities=15% Similarity=0.113 Sum_probs=106.1
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceee
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr 224 (391)
++.+|+++|+.+ +|++++|+||||||||||||+|+|...+. ..|.+|+|.++|.++...... .++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~--------~~~~~G~I~~~G~~~~~~~~~------~r~ 138 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF--------HIGVEGVITYDGITPEEIKKH------YRG 138 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC--------CCCceeEEEECCEehHHHHhh------cCc
Confidence 356899999999 89999999999999999999999986210 157899999999876433211 234
Q ss_pred eEEEEeccCCC----cccCC---------c-----ccc---------hHHHHhCChhHHhhhchh--HHhhcCccccccc
Q 016339 225 HVSLLPLSGGG----YLADT---------P-----GFN---------QPSLLKVTKQSLAQTFPE--IKEMLKANEPAKC 275 (391)
Q Consensus 225 ~i~~v~~~~~~----~l~Dt---------p-----g~~---------~~~l~~~~~~~l~~~~p~--~~~~LSgGq~qr~ 275 (391)
.++++++.... .+.++ | +.. +..+..+++.+..+.... ....||||||||+
T Consensus 139 ~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRv 218 (1394)
T TIGR00956 139 DVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRV 218 (1394)
T ss_pred eeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHH
Confidence 56777665211 11111 1 010 112333455444433211 1237999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+++ +.+|+++++| |+.....+.++|+++.++
T Consensus 219 sIA~aL-~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~ 258 (1394)
T TIGR00956 219 SIAEAS-LGGAKIQCWDNATRGLDSATALEFIRALKTSANI 258 (1394)
T ss_pred HHHHHH-HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHh
Confidence 999999 9999999999 889999999999998764
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-15 Score=174.94 Aligned_cols=141 Identities=14% Similarity=0.179 Sum_probs=101.9
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC---CCcceecCccccccccccCCCcc
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~---~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
+..+|+++|+.+ +|++++|+||||||||||||+|+|.. +|+ +|+|.++|.++.....
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l------------~~~~~~~G~I~~nG~~~~~~~~------- 237 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL------------DPSLKVSGEITYNGYRLNEFVP------- 237 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC------------CCCCcceeEEEECCEechhhcc-------
Confidence 467899999999 89999999999999999999999998 776 9999999976633211
Q ss_pred eeeeEEEEeccCCC----cccCC---------ccc----------------------------------------chHHH
Q 016339 222 TTRHVSLLPLSGGG----YLADT---------PGF----------------------------------------NQPSL 248 (391)
Q Consensus 222 ttr~i~~v~~~~~~----~l~Dt---------pg~----------------------------------------~~~~l 248 (391)
.+.+++++|.... .+.++ ++. .+..+
T Consensus 238 -~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L 316 (1470)
T PLN03140 238 -RKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTL 316 (1470)
T ss_pred -cceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHH
Confidence 1335555554110 11111 000 01122
Q ss_pred HhCChhHHh-----hhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 249 LKVTKQSLA-----QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 249 ~~~~~~~l~-----~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
..+++.+.. +.++. .||||||||+.||+++ +.+|+++++| |......+.++|+++.+.
T Consensus 317 ~~lGL~~~~~t~vg~~~~r---glSGGerkRVsia~aL-~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~ 385 (1470)
T PLN03140 317 KILGLDICKDTIVGDEMIR---GISGGQKKRVTTGEMI-VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL 385 (1470)
T ss_pred HHcCCccccCceeCCcccc---CCCcccceeeeehhhh-cCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh
Confidence 233443322 22333 8999999999999999 9999999999 889999999999998654
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-15 Score=138.79 Aligned_cols=140 Identities=19% Similarity=0.163 Sum_probs=93.0
Q ss_pred HHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEE
Q 016339 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229 (391)
Q Consensus 151 ~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v 229 (391)
+++++.+ +| +++|+||||||||||+++|.++..+.. ...+..+..|++.+.+.++.. ....+.++++
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~v 81 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQS---AKSLRGEKMSDVIFAGSETRK--------PANFAEVTLT 81 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhcccc---chhhcccCHHHHhccCCCCCC--------CCceEEEEEE
Confidence 5667777 67 999999999999999999999872110 000112233456665554321 1124678899
Q ss_pred eccCCCcccC-CcccchHHHHhCChhHHhhhchhHHhhcCccccccccccccccc----CCCcEEEec------CHHHHH
Q 016339 230 PLSGGGYLAD-TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL----GEPGCVVKG------DWERYQ 298 (391)
Q Consensus 230 ~~~~~~~l~D-tpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~----~eP~~lllD------D~~~~~ 298 (391)
+++...+... ........+.. .+..+..+. .||+||+||++||+++ + ..|+++++| |+....
T Consensus 82 fq~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~---~LS~G~kqrl~la~~l-~~~~~~~~~illlDEP~~~LD~~~~~ 154 (197)
T cd03278 82 FDNSDGRYSIISQGDVSEIIEA---PGKKVQRLS---LLSGGEKALTALALLF-AIFRVRPSPFCVLDEVDAALDDANVE 154 (197)
T ss_pred EEcCCCceeEEehhhHHHHHhC---CCccccchh---hcCHHHHHHHHHHHHH-HHhccCCCCEEEEeCCcccCCHHHHH
Confidence 9876544211 01111222222 344556666 9999999999999998 4 467999999 888999
Q ss_pred HHHHHHHHHHH
Q 016339 299 YYFQLLDEIRI 309 (391)
Q Consensus 299 ~~~~ll~el~~ 309 (391)
.+.+++.++.+
T Consensus 155 ~l~~~l~~~~~ 165 (197)
T cd03278 155 RFARLLKEFSK 165 (197)
T ss_pred HHHHHHHHhcc
Confidence 99999998754
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-15 Score=170.45 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=122.5
Q ss_pred cCCeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.|+++.+.|..+ .+|++||+.| +||.+||||..|||||||+++|.++. .|.+|+|.|||.++..
T Consensus 1139 I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~------------e~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV------------EPAEGEILIDGVDISK 1206 (1381)
T ss_pred EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc------------CccCCeEEEcCeeccc
Confidence 4578999999665 7999999999 89999999999999999999999999 9999999999999987
Q ss_pred cccccCCCcceeeeEEEEecc---CCCcccCC--c--ccch----HHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLS---GGGYLADT--P--GFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt--p--g~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+.-+. .+..++.+||+ +.|.+..| | ...+ ..|+...+.+.....|. -...+|-|||
T Consensus 1207 igL~d-----LRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1207 IGLHD-----LRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred ccHHH-----HHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 76543 56778899998 34444433 1 1222 33445555544444442 2347899999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
|-+++|||+ +.+.+++|+| |++.-..+++.+++
T Consensus 1282 QLlCLARAL-Lr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1282 QLLCLARAL-LRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred HHHHHHHHH-hccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 999999999 9999999999 88888888887776
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-15 Score=157.48 Aligned_cols=156 Identities=24% Similarity=0.195 Sum_probs=110.9
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec-Cccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~-g~~v~~ 211 (391)
+.++++.+.-.. ..-++++++.+ +|+.+.|.||||||||||+++|+|++ +--+|+|.+- +.++-.
T Consensus 393 i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW------------P~g~G~I~~P~~~~~lf 460 (604)
T COG4178 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW------------PWGSGRISMPADSALLF 460 (604)
T ss_pred eEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC------------ccCCCceecCCCCceEE
Confidence 456777776644 45789999999 89999999999999999999999999 5566777554 444666
Q ss_pred cccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhH---HhhcCcccccccccccccccCCCcE
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI---KEMLKANEPAKCSFNNCLHLGEPGC 288 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~---~~~LSgGq~qr~~iaralh~~eP~~ 288 (391)
+||+|-....+-+....+|..... .. .......|..+++.++.+++-+. ...||+|||||++|||.+ ++.|+.
T Consensus 461 lpQ~PY~p~GtLre~l~YP~~~~~--~~-d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil-L~kP~~ 536 (604)
T COG4178 461 LPQRPYLPQGTLREALCYPNAAPD--FS-DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL-LHKPKW 536 (604)
T ss_pred ecCCCCCCCccHHHHHhCCCCCCC--CC-hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH-HcCCCE
Confidence 777654333322332222322110 00 11122345677888777665432 248999999999999999 999999
Q ss_pred EEec------CHHHHHHHHHHHHH
Q 016339 289 VVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 289 lllD------D~~~~~~~~~ll~e 306 (391)
+++| |++....+++++++
T Consensus 537 v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 537 VFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred EEEecchhccChHHHHHHHHHHHh
Confidence 9999 88888888888876
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-15 Score=158.53 Aligned_cols=137 Identities=22% Similarity=0.279 Sum_probs=94.6
Q ss_pred eeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-cccccccc
Q 016339 138 EPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVST 214 (391)
Q Consensus 138 ~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~~ 214 (391)
++++++|++ ...+++++|.+ .|+.+||+||||+||||||++|+|.. .|.+|+|.+.. ..+++
T Consensus 325 ~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~------------~~~~G~v~~g~~v~igy--- 389 (530)
T COG0488 325 ENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL------------GPLSGTVKVGETVKIGY--- 389 (530)
T ss_pred eccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc------------ccCCceEEeCCceEEEE---
Confidence 446677755 47899999999 89999999999999999999999998 78889887642 33344
Q ss_pred ccCCCcceeeeEEEEeccCCCc-----cc----CC-ccc----chHHHHhCChh-HHhhhchhHHhhcCccccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY-----LA----DT-PGF----NQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~-----l~----Dt-pg~----~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
+.|..... +. +. |+. ....+..+... +...+... .||||||-||.||.
T Consensus 390 --------------f~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~---~LSGGEk~Rl~La~ 452 (530)
T COG0488 390 --------------FDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVG---VLSGGEKARLLLAK 452 (530)
T ss_pred --------------EEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchh---hcCHhHHHHHHHHH
Confidence 44332111 11 11 111 11122223221 11223333 89999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
++ ..+|.++|+| |.+..+.+.+.|.+.
T Consensus 453 ll-~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f 485 (530)
T COG0488 453 LL-LQPPNLLLLDEPTNHLDIESLEALEEALLDF 485 (530)
T ss_pred Hh-ccCCCEEEEcCCCccCCHHHHHHHHHHHHhC
Confidence 99 9999999999 777777777766653
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-14 Score=138.34 Aligned_cols=144 Identities=26% Similarity=0.418 Sum_probs=107.3
Q ss_pred ccccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCcc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~ 148 (391)
.+..++.+|.++.|..+..|... ...+..++ .++++++|+||+||.+.+..+.|...+.+.++..+.+|..++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~ 92 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSENPMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQ 92 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCChhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 34578899999999998877432 33455544 2789999999999988766778888787777788889988777
Q ss_pred chHHHhhcc------------------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 149 GLDSLLQRL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 149 ~L~~ls~~i------------------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+++.+...+ .+-.++|+|.+|+|||||||.|.|.. ..
T Consensus 93 gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~-------------------------~~ 147 (287)
T PRK09563 93 GVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKK-------------------------IA 147 (287)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCC-------------------------cc
Confidence 776654332 12369999999999999999999865 11
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccCCcccchHH
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~ 247 (391)
.++..++ +|++..++....+.++.||||+..+.
T Consensus 148 ~~~~~~g----~T~~~~~~~~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 148 KTGNRPG----VTKAQQWIKLGKGLELLDTPGILWPK 180 (287)
T ss_pred ccCCCCC----eEEEEEEEEeCCcEEEEECCCcCCCC
Confidence 2233333 78888888877667899999996543
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-16 Score=144.07 Aligned_cols=59 Identities=12% Similarity=0.000 Sum_probs=47.7
Q ss_pred HHhCChhH-HhhhchhHHhhcCcccccccccccccccCCC--cEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 248 LLKVTKQS-LAQTFPEIKEMLKANEPAKCSFNNCLHLGEP--GCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 248 l~~~~~~~-l~~~~p~~~~~LSgGq~qr~~iaralh~~eP--~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+..+++.. ..+.+|. .|||||+||++||+++ +.+| +++|+| |+.....+.+++.++++.
T Consensus 121 l~~~~l~~~~~~~~~~---~LSgG~~qrv~laral-~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~ 188 (226)
T cd03270 121 LVDVGLGYLTLSRSAP---TLSGGEAQRIRLATQI-GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL 188 (226)
T ss_pred HHHCCCCcccccCccC---cCCHHHHHHHHHHHHH-HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC
Confidence 34445544 3566777 9999999999999999 8887 599999 888999999999988643
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-14 Score=128.38 Aligned_cols=146 Identities=23% Similarity=0.327 Sum_probs=97.7
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHH----HHHHH--HHHHhcCC---eeEEEE
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV----LNTWK--SRLHTWGY---EPLFCS 143 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~----~~~~~--~~~~~~g~---~~v~~s 143 (391)
...++|.+++|+.+..|..... ..+ .....++++++|+||+|+.+.+. ...|. ..+...++ ..+.+|
T Consensus 31 ~~~~ad~il~VvD~~~~~~~~~--~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vS 106 (190)
T cd01855 31 ISPKKALVVHVVDIFDFPGSLI--PRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILIS 106 (190)
T ss_pred cccCCcEEEEEEECccCCCccc--hhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEE
Confidence 4678999999999876543221 111 12345789999999999975432 23343 11133444 567889
Q ss_pred cCCccchHHHhhcc-----cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCC
Q 016339 144 VESKLGLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-----~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~ 218 (391)
..++.+++.+-..+ .+..++|+|.+|+|||||||.|.+..... .. ...-..++..
T Consensus 107 A~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~-----------~~------~~~~~~~~~~--- 166 (190)
T cd01855 107 AKKGWGVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGK-----------KK------LKDLLTTSPI--- 166 (190)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccc-----------cc------cccccccCCC---
Confidence 98888888876666 45789999999999999999999865100 00 0000122222
Q ss_pred CcceeeeEEEEeccCCCcccCCccc
Q 016339 219 GKHTTRHVSLLPLSGGGYLADTPGF 243 (391)
Q Consensus 219 ~~~ttr~i~~v~~~~~~~l~Dtpg~ 243 (391)
++||++...+....+.+++||||+
T Consensus 167 -~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 167 -PGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred -CCeeeeeEEEecCCCCEEEeCcCC
Confidence 338888888888767789999996
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-15 Score=165.58 Aligned_cols=154 Identities=15% Similarity=0.203 Sum_probs=119.0
Q ss_pred eeEEEEcCCcc-chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 138 EPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 138 ~~v~~s~~~~~-~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++.+-|+... |++++++.+ +|++.+++|+|||||||++|+|.|.. .|++|++++.|.++..-...
T Consensus 568 ~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~------------~~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 568 NNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET------------KPTSGEALIKGHDITVSTDF 635 (885)
T ss_pred cceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc------------cCCcceEEEecCccccccch
Confidence 56777787777 999999999 89999999999999999999999999 99999999998877542222
Q ss_pred cCCCcceeeeEEEEeccCCCc--------------cc-----CCcccchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY--------------LA-----DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~--------------l~-----Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
.. ..+++++-||....+ +. |.....+..+..+++.+.+++... .+|||+++|+.
T Consensus 636 ~~----~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~---~ySgG~kRkLs 708 (885)
T KOG0059|consen 636 QQ----VRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVR---TYSGGNKRRLS 708 (885)
T ss_pred hh----hhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchh---hCCCcchhhHH
Confidence 11 234566666652211 11 111122344455666666666544 89999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+|-++ +.+|.++++| ||..++.+++++.++++..
T Consensus 709 ~aial-ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 709 FAIAL-IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred HHHHH-hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999 9999999999 9999999999999998754
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-14 Score=142.17 Aligned_cols=169 Identities=26% Similarity=0.405 Sum_probs=122.0
Q ss_pred cEEEEceecccCceeEEEE-----------eeccccccccccccccceeEEEEEecC-CCCCHHHHHHHHHHHHhCCCCE
Q 016339 43 DKVVVGSIDWVDRRGMIEN-----------VFQRSTEILDPPVANVDHLLLLFSMDQ-PKLEPFALTRFLVEAESTGIPL 110 (391)
Q Consensus 43 D~V~~~~~~~~~~~~~i~~-----------v~~R~~~~~~~~~anvD~~liv~s~~~-p~~~~~~l~r~L~~a~~~~~~~ 110 (391)
|++. ....|.+..+.+.+ +..+..++...++..+|.++.|+.... +......+.++| +..++|+
T Consensus 40 Dr~y-~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~L---r~~~kpv 115 (444)
T COG1160 40 DRIY-GDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKIL---RRSKKPV 115 (444)
T ss_pred CCcc-ceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH---HhcCCCE
Confidence 5543 22356666555543 344455566778899999888888764 456677888888 4778999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCCccchHHHhhcc------------cC----CEEEEEecCCCcHH
Q 016339 111 TLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGLDSLLQRL------------RD----QTTVIVGPSGVGKS 173 (391)
Q Consensus 111 ~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~~~~L~~ls~~i------------~G----e~vaLvGpSGsGKS 173 (391)
++|+||+|....++. ...|+++|+ +++.+|..++.++.++--.+ .+ -.+||+|.+++|||
T Consensus 116 iLvvNK~D~~~~e~~---~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKS 192 (444)
T COG1160 116 ILVVNKIDNLKAEEL---AYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKS 192 (444)
T ss_pred EEEEEcccCchhhhh---HHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCch
Confidence 999999999854432 357889999 78999999998887765332 12 47999999999999
Q ss_pred HHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCC---cccCCcccchHH
Q 016339 174 SLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS 247 (391)
Q Consensus 174 TLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dtpg~~~~~ 247 (391)
||+|+|+|..+ .-++..+| ||++.......+++ .++||.|++...
T Consensus 193 sLiN~ilgeeR-------------------------~Iv~~~aG----TTRD~I~~~~e~~~~~~~liDTAGiRrk~ 240 (444)
T COG1160 193 SLINAILGEER-------------------------VIVSDIAG----TTRDSIDIEFERDGRKYVLIDTAGIRRKG 240 (444)
T ss_pred HHHHHhccCce-------------------------EEecCCCC----ccccceeeeEEECCeEEEEEECCCCCccc
Confidence 99999999872 23445555 77776666655443 388999987653
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-15 Score=174.84 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=93.1
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
.+++..+|+++||.+ +|++++|+|||||||||||++|+|+. +|++|+|.+. ..++.+++.+.....
T Consensus 669 ~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~------------~~~~G~i~~~-~~i~yv~Q~~~l~~~ 735 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF------------EISEGRVWAE-RSIAYVPQQAWIMNA 735 (1560)
T ss_pred ccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEEC-CeEEEEeCCCccCCC
Confidence 345667899999999 99999999999999999999999999 9999999875 357777776544332
Q ss_pred ee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhch--------hHHhhcCcccccccccccccccCCCcEEEec
Q 016339 222 TT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP--------EIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (391)
Q Consensus 222 tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p--------~~~~~LSgGq~qr~~iaralh~~eP~~lllD 292 (391)
+- .++.+.. ..+. ......+...++.+..+.+| +....||||||||++||||+ ..+|+++|+|
T Consensus 736 Tv~enI~~~~------~~~~-~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl-~~~p~illLD 807 (1560)
T PTZ00243 736 TVRGNILFFD------EEDA-ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAV-YANRDVYLLD 807 (1560)
T ss_pred cHHHHHHcCC------hhhH-HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHH-hcCCCEEEEc
Confidence 21 2332210 0010 00111121122222222221 11238999999999999999 9999999999
Q ss_pred ------CHHHHHHHHH
Q 016339 293 ------DWERYQYYFQ 302 (391)
Q Consensus 293 ------D~~~~~~~~~ 302 (391)
|+.....+++
T Consensus 808 EP~saLD~~~~~~i~~ 823 (1560)
T PTZ00243 808 DPLSALDAHVGERVVE 823 (1560)
T ss_pred CccccCCHHHHHHHHH
Confidence 5655555544
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-15 Score=146.61 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=115.4
Q ss_pred HhcCCeeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 133 HTWGYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 133 ~~~g~~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.++.++++.++|... .-+..||++| +|+++-|+|.||||||||+.+|.|+. .|++|.|+++|..|.
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~------------~PqsG~I~ldg~pV~ 388 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY------------QPQSGEILLDGKPVS 388 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc------------CCCCCceeECCccCC
Confidence 456788999999766 5678899999 89999999999999999999999999 999999999998875
Q ss_pred ccccccCCCcceeeeEEEEeccC-------CCcccCCcccchHHHHhCChhHHhhhch-hH-HhhcCccccccccccccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG-------GGYLADTPGFNQPSLLKVTKQSLAQTFP-EI-KEMLKANEPAKCSFNNCL 281 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~-------~~~l~Dtpg~~~~~l~~~~~~~l~~~~p-~~-~~~LSgGq~qr~~iaral 281 (391)
.-.... .+.-++.++.++ +..-.-.|+.....+..+.+........ ++ .-.||.|||+|+++-.|+
T Consensus 389 ~e~led-----YR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~Al 463 (546)
T COG4615 389 AEQLED-----YRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463 (546)
T ss_pred CCCHHH-----HHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHH
Confidence 322211 111122222222 2111234555555555554433211110 11 127999999999999999
Q ss_pred ccCCCcEEEec------CH-HHHHHHHHHHHHHHHHHhhh
Q 016339 282 HLGEPGCVVKG------DW-ERYQYYFQLLDEIRIREEFQ 314 (391)
Q Consensus 282 h~~eP~~lllD------D~-~~~~~~~~ll~el~~~~~~~ 314 (391)
+.|.+++|+| || -|+..|..++-.++++.++.
T Consensus 464 -lEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI 502 (546)
T COG4615 464 -LEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI 502 (546)
T ss_pred -HhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE
Confidence 9999999999 44 37777778888888777663
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-15 Score=157.14 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=110.3
Q ss_pred CeeEEEEcC-----CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 137 YEPLFCSVE-----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 137 ~~~v~~s~~-----~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.++.++.. .+..|++|+..+ +|+++||+||||||||||||+|+|....+ ...+|+|.+||+...
T Consensus 28 ~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~---------~~~~G~ilvNG~~~~ 98 (613)
T KOG0061|consen 28 FRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG---------LKLSGEILLNGRPRD 98 (613)
T ss_pred EEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCC---------CcceEEEEECCccCc
Confidence 455555542 367899999999 89999999999999999999999998321 257899999994321
Q ss_pred ccccccCCCcceeeeEEEEeccCCC----cccC---------Ccc---------cchHHHHhCChhHHhhhchh--HHhh
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGG----YLAD---------TPG---------FNQPSLLKVTKQSLAQTFPE--IKEM 266 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~----~l~D---------tpg---------~~~~~l~~~~~~~l~~~~p~--~~~~ 266 (391)
.- ...+.++++.|+.-. .+.+ .|. ..+..+..+++....+..-. ..+-
T Consensus 99 ~~--------~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rg 170 (613)
T KOG0061|consen 99 SR--------SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRG 170 (613)
T ss_pred hh--------hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCc
Confidence 10 022345555554211 1111 121 22333445666655554432 1136
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+|||||+|++||.-+ +++|.++++| |......++++|+++.++...
T Consensus 171 iSGGErkRvsia~El-l~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grt 222 (613)
T KOG0061|consen 171 LSGGERKRVSIALEL-LTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRT 222 (613)
T ss_pred cccchhhHHHHHHHH-HcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCE
Confidence 999999999999999 9999999999 777888899999999877443
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-14 Score=135.25 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=37.8
Q ss_pred hcCccccccccccccccc----CCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHL----GEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~----~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+|+ + .+|+++++| |+.....+++.+.++..
T Consensus 158 ~lS~G~~~r~~la~~l-~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~ 210 (243)
T cd03272 158 QLSGGQKSLVALALIF-AIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD 210 (243)
T ss_pred ccCHHHHHHHHHHHHH-HHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC
Confidence 8999999999999999 4 468999999 88888899888888754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-13 Score=119.68 Aligned_cols=136 Identities=29% Similarity=0.339 Sum_probs=88.8
Q ss_pred ceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCc--cc-----
Q 016339 78 DHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK--LG----- 149 (391)
Q Consensus 78 D~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~--~~----- 149 (391)
|.++.|..+..|... ...+.+++. ....++|.++|+||+|+++++....|..++.+......+.+.... ..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKS 79 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhcc
Confidence 778888888877332 334555532 244679999999999999999888999888775322222222110 00
Q ss_pred ------------------hHHHhhcc-----c-----CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCc
Q 016339 150 ------------------LDSLLQRL-----R-----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201 (391)
Q Consensus 150 ------------------L~~ls~~i-----~-----Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~ 201 (391)
.+.+-..+ + .-.++++|.+|+|||||||.|.|...
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~----------------- 142 (172)
T cd04178 80 VKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRA----------------- 142 (172)
T ss_pred cccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCccc-----------------
Confidence 11110001 1 24789999999999999999998651
Q ss_pred ceecCccccccccccCCCcceeeeEEEEeccCCCcccCCccc
Q 016339 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243 (391)
Q Consensus 202 I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~ 243 (391)
..++..++ +|++...+....+..+.||||+
T Consensus 143 --------~~~~~~pg----~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 143 --------CNVGATPG----VTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred --------ceecCCCC----eEcceEEEEeCCCEEEEECcCC
Confidence 12233333 7777777776656678999985
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-14 Score=161.77 Aligned_cols=137 Identities=19% Similarity=0.181 Sum_probs=98.7
Q ss_pred CeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 137 YEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 137 ~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+++.+++... ...|+||||.+ +|+.+||+||-||||||||.+|+|.. ...+|++.++|. ++++
T Consensus 521 i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm------------~~~sG~v~v~gs-iaYv 587 (1381)
T KOG0054|consen 521 IKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEM------------PKLSGSVAVNGS-VAYV 587 (1381)
T ss_pred EeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCc------------ccccceEEEcCe-EEEe
Confidence 3555666543 33899999999 89999999999999999999999999 899999999886 7888
Q ss_pred ccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhch--------hHHhhcCccccccccccccccc
Q 016339 213 STKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP--------EIKEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 213 ~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p--------~~~~~LSgGq~qr~~iaralh~ 283 (391)
+|.+.....|- .|+ ++..++ | +..-+..+..+.+..-.+.+| |-.-.||||||||+++|||+ -
T Consensus 588 ~Q~pWI~ngTvreNI-LFG~~~-----d-~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAV-Y 659 (1381)
T KOG0054|consen 588 PQQPWIQNGTVRENI-LFGSPY-----D-EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAV-Y 659 (1381)
T ss_pred ccccHhhCCcHHHhh-hcCccc-----c-HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHH-h
Confidence 88776554443 333 222111 1 111122333344443334443 22238999999999999999 9
Q ss_pred CCCcEEEecCH
Q 016339 284 GEPGCVVKGDW 294 (391)
Q Consensus 284 ~eP~~lllDD~ 294 (391)
.+.++.++|||
T Consensus 660 ~~adIYLLDDp 670 (1381)
T KOG0054|consen 660 QDADIYLLDDP 670 (1381)
T ss_pred ccCCEEEEcCc
Confidence 99999999965
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.9e-14 Score=130.79 Aligned_cols=144 Identities=14% Similarity=0.089 Sum_probs=87.6
Q ss_pred EcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcce
Q 016339 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (391)
Q Consensus 143 s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~t 222 (391)
+|++..+++++++ ++++|+|||||||||||++|.-.... +.. . .....++.+.+.....+..
T Consensus 13 ~~~~~~~l~~~~~----~i~~ivGpNGaGKSTll~~i~~~~G~----------~~~--~--~~~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 13 SYAGEQVIGPFHK----SFSAIVGPNGSGKSNVIDSMLFVFGF----------RAS--K--MRQKKLSDLIHNSAGHPNL 74 (212)
T ss_pred cCCCCeeeccCCC----CeEEEECCCCCCHHHHHHHHHHHhcc----------CHH--H--hhhhhHHHHhcCCCCCCCC
Confidence 7888888888877 78999999999999999999843200 000 0 0012244444433322222
Q ss_pred -eeeEEEEeccCCC--------cccCCccc---chHHHHhCChhHHhhhchhHHhhcCccccccccccccccc----CCC
Q 016339 223 -TRHVSLLPLSGGG--------YLADTPGF---NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL----GEP 286 (391)
Q Consensus 223 -tr~i~~v~~~~~~--------~l~Dtpg~---~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~----~eP 286 (391)
...+..++....+ .....+.+ ....+..+++.+..+..+. .||+||+||++||+|+ + ..|
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~---~lS~G~~~r~~la~al-~~~~~~~p 150 (212)
T cd03274 75 DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS---NLSGGEKTLSSLALVF-ALHHYKPT 150 (212)
T ss_pred ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh---hcCHHHHHHHHHHHHH-HhcccCCC
Confidence 2344444432111 00011110 0111223334444455555 8999999999999987 4 357
Q ss_pred cEEEec------CHHHHHHHHHHHHHHH
Q 016339 287 GCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 287 ~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+++++| |+.....+.+++.++.
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~~ 178 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKERT 178 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHc
Confidence 999999 8889999999998874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6e-14 Score=143.80 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=101.8
Q ss_pred CeeEEEEcCC-c-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCccee--cC--ccc
Q 016339 137 YEPLFCSVES-K-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF--ED--QRV 209 (391)
Q Consensus 137 ~~~v~~s~~~-~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~--~g--~~v 209 (391)
++.++++..+ + ..++++||.+ +|+.+.|.||||||||||++.|.|++ +-.+|++.. ++ .++
T Consensus 436 ~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW------------p~~~G~l~k~~~~~~~~l 503 (659)
T KOG0060|consen 436 FEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW------------PSTGGKLTKPTDGGPKDL 503 (659)
T ss_pred eeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc------------ccCCCeEEecccCCCCce
Confidence 4556666544 3 4677899999 89999999999999999999999999 667777753 23 446
Q ss_pred cccccccCCCcceeeeEEEEeccCCCcccCCcccc----hHHHHhCChhHHhhhchhHH--------hhcCccccccccc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN----QPSLLKVTKQSLAQTFPEIK--------EMLKANEPAKCSF 277 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~----~~~l~~~~~~~l~~~~p~~~--------~~LSgGq~qr~~i 277 (391)
-.++|+|-..-.|-|.-..+|..... .+..+.. ...|+.+.+.++..+...+. +.||+||+||++|
T Consensus 504 fflPQrPYmt~GTLRdQvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 504 FFLPQRPYMTLGTLRDQVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred EEecCCCCccccchhheeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence 66777764222232443344432111 1111221 23345556666655443222 4899999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
||.+ .++|..+|+| +.+....+.+++++
T Consensus 582 ARLf-y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~ 615 (659)
T KOG0060|consen 582 ARLF-YHKPKFAILDECTSAVTEDVEGALYRKCRE 615 (659)
T ss_pred HHHH-hcCCceEEeechhhhccHHHHHHHHHHHHH
Confidence 9999 9999999999 34444444454544
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.1e-13 Score=130.64 Aligned_cols=142 Identities=32% Similarity=0.504 Sum_probs=111.5
Q ss_pred ccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhc-CCeeEEEEcCCccc
Q 016339 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLG 149 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~-g~~~v~~s~~~~~~ 149 (391)
..+..+|.++.|..+..|..+ ...++++. .+++.++|+||+||++....+.|...+.+- +...+.++......
T Consensus 30 ~~~~~~d~vvevvDar~P~~s~~~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~ 104 (322)
T COG1161 30 EVLKSVDVVVEVVDARDPLGTRNPELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQG 104 (322)
T ss_pred HhcccCCEEEEEEeccccccccCccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccC
Confidence 356789999999999998554 44678876 356679999999999999999999988776 67777777655554
Q ss_pred hHHHh--------hcc-----cC-----CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 150 LDSLL--------QRL-----RD-----QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 150 L~~ls--------~~i-----~G-----e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+..+. ..+ .| ..+++||-+++|||||||.|+|.. ...
T Consensus 105 ~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~-------------------------~~~ 159 (322)
T COG1161 105 GKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKK-------------------------VAK 159 (322)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhccc-------------------------cee
Confidence 44444 222 23 679999999999999999999987 134
Q ss_pred cccccCCCcceeeeEEEEeccCCCcccCCcccchHH
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~ 247 (391)
++..+| +|++.+.+....+.++.||||+..+.
T Consensus 160 ~s~~PG----~Tk~~q~i~~~~~i~LlDtPGii~~~ 191 (322)
T COG1161 160 TSNRPG----TTKGIQWIKLDDGIYLLDTPGIIPPK 191 (322)
T ss_pred eCCCCc----eecceEEEEcCCCeEEecCCCcCCCC
Confidence 555555 89999999999888999999987654
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=129.33 Aligned_cols=157 Identities=27% Similarity=0.376 Sum_probs=107.1
Q ss_pred cccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHH----HHHHHHH-HHHhcCC---eeEEEEcC
Q 016339 75 ANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLFCSVE 145 (391)
Q Consensus 75 anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~----~~~~~~~-~~~~~g~---~~v~~s~~ 145 (391)
.++|.++.|+.+..+..+ ...+.+++ .++++++|+||+||.+.. ....|.. .+...|+ +.+.+|..
T Consensus 62 ~~~~~Il~VvD~~d~~~s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk 136 (360)
T TIGR03597 62 DSNALIVYVVDIFDFEGSLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAK 136 (360)
T ss_pred cCCcEEEEEEECcCCCCCccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCC
Confidence 467888888888654322 23444443 378999999999998643 3455643 4566776 36778998
Q ss_pred CccchHHHhhcc----cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 146 SKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 146 ~~~~L~~ls~~i----~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
++.+++.+...+ .|..++|+|.+|||||||||.|++.... . .....++..+ +
T Consensus 137 ~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~~~~~~------------~--------~~~~~~s~~p----g 192 (360)
T TIGR03597 137 KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLKQNNG------------D--------KDVITTSPFP----G 192 (360)
T ss_pred CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhhccC------------C--------cceeeecCCC----C
Confidence 888888877666 4779999999999999999999986510 0 0112334333 4
Q ss_pred eeeeEEEEeccCCCcccCCcccchHH--HHhCChhHHhhhc
Q 016339 222 TTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTF 260 (391)
Q Consensus 222 ttr~i~~v~~~~~~~l~Dtpg~~~~~--l~~~~~~~l~~~~ 260 (391)
+|+.+..++...+.+++||||+.... ...+...++....
T Consensus 193 tT~~~~~~~~~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~ 233 (360)
T TIGR03597 193 TTLDLIEIPLDDGHSLYDTPGIINSHQMAHYLDKKDLKYIT 233 (360)
T ss_pred eEeeEEEEEeCCCCEEEECCCCCChhHhhhhcCHHHHhhcC
Confidence 88888888876566799999997543 3334444443333
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-13 Score=137.68 Aligned_cols=182 Identities=17% Similarity=0.114 Sum_probs=111.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCC-CcceeeeEEEEeccCCCc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR-GKHTTRHVSLLPLSGGGY 236 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~-~~~ttr~i~~v~~~~~~~ 236 (391)
.||+++++||||-||||++++|+|.+ +|++|. ..+..+++-+|.... +.++-+ .+.......
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~i------------kPdeg~--~~~~~vSyKPQyI~~~~~gtV~---~~l~~~~~~ 428 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVI------------KPDEGS--EEDLKVSYKPQYISPDYDGTVE---DLLRSAIRS 428 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhccc------------cCCCCC--CccceEeecceeecCCCCCcHH---HHHHHhhhh
Confidence 68999999999999999999999999 999998 334455544443210 011101 000000000
Q ss_pred ccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCH------HHHHHHHHHHHHHHHH
Q 016339 237 LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (391)
Q Consensus 237 l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~------~~~~~~~~ll~el~~~ 310 (391)
...+.-+....+..+.++.+.+..-. .|||||.||++||.|| ..+.++.++|.| +.+-..-+.++.+...
T Consensus 429 ~~~~s~~~~ei~~pl~l~~i~e~~v~---~LSGGELQRvaIaa~L-~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~ 504 (591)
T COG1245 429 AFGSSYFKTEIVKPLNLEDLLERPVD---ELSGGELQRVAIAAAL-SREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN 504 (591)
T ss_pred hcccchhHHhhcCccchHHHHhcccc---cCCchhHHHHHHHHHh-ccccCEEEecCchhhccHHHHHHHHHHHHHHHhh
Confidence 12222233344556677888887666 9999999999999999 999999999944 4444445666665544
Q ss_pred Hhhhh--hhhhcccccccccccccCcccccCCccccccccccchhhhhHHHHHHH
Q 016339 311 EEFQL--RTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDEL 363 (391)
Q Consensus 311 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~~rr~~~~~~~~~~ 363 (391)
.+... ..++.---..++.+.. +-.+||-..-.+.-..++|+--..|...|
T Consensus 505 ~~kta~vVdHDi~~~dyvsDr~i---vF~GePg~~g~a~~P~~mr~GMN~FLk~l 556 (591)
T COG1245 505 NEKTALVVDHDIYMIDYVSDRLI---VFEGEPGKHGHASPPMSMREGMNRFLKNL 556 (591)
T ss_pred cCceEEEEecceehhhhhhceEE---EEecCCCccCcCCCCccHHHHHHHHHHHc
Confidence 33311 1111111122222322 23457777777777777887777776655
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-12 Score=128.18 Aligned_cols=155 Identities=26% Similarity=0.393 Sum_probs=104.1
Q ss_pred eeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCH----HHHHHHHHH-HHhcCC---eeEEEEcCCccc
Q 016339 79 HLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKSR-LHTWGY---EPLFCSVESKLG 149 (391)
Q Consensus 79 ~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~----~~~~~~~~~-~~~~g~---~~v~~s~~~~~~ 149 (391)
.++.|..+..+..+ ...+.++. .++++++|+||+||.+. +....|... ++..|+ +.+.+|..++.+
T Consensus 72 lIv~VVD~~D~~~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~g 146 (365)
T PRK13796 72 LVVNVVDIFDFNGSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHG 146 (365)
T ss_pred EEEEEEECccCCCchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCC
Confidence 66667776554322 22344443 37899999999999863 234556543 445676 567889888888
Q ss_pred hHHHhhcc----cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 150 LDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 150 L~~ls~~i----~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
++.+-..+ +|..+.+||.+|||||||||+|.+... | ..+...++ ..++||++
T Consensus 147 I~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~~---------------~-----~~~~~~~s----~~pGTT~~ 202 (365)
T PRK13796 147 IDELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEIT---------------G-----EKDVITTS----RFPGTTLD 202 (365)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhcc---------------C-----ccceEEec----CCCCccce
Confidence 88776665 678899999999999999999997541 0 00111233 34459999
Q ss_pred EEEEeccCCCcccCCcccchH-HH-HhCChhHHhhhchh
Q 016339 226 VSLLPLSGGGYLADTPGFNQP-SL-LKVTKQSLAQTFPE 262 (391)
Q Consensus 226 i~~v~~~~~~~l~Dtpg~~~~-~l-~~~~~~~l~~~~p~ 262 (391)
...++++.+..++||||+... .+ ..+..+++...+|.
T Consensus 203 ~~~~~l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~ 241 (365)
T PRK13796 203 KIEIPLDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPK 241 (365)
T ss_pred eEEEEcCCCcEEEECCCccccchhhhcCCHHHHhhcCCC
Confidence 888888777789999999532 22 23455555555554
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-13 Score=124.50 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=84.2
Q ss_pred HHHhhcc--cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEE
Q 016339 151 DSLLQRL--RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (391)
Q Consensus 151 ~~ls~~i--~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~ 228 (391)
.+|+|.. +|++++|+||||||||||+++|++... .+..+....+ .....+... .....+.+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-----------g~~~~~~~~~-~~~~~~~~~-----~~~~~v~~ 80 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-----------GKTPRYGRQE-NLRSVFAPG-----EDTAEVSF 80 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-----------cCccccccch-hHHHHhcCC-----CccEEEEE
Confidence 3445544 488999999999999999999996431 1222222211 000011110 12344555
Q ss_pred EeccCCCc--ccCCcccchHHH------HhCChhHHhhhchhHHhhcCcccccccccccccccC----------CCcEEE
Q 016339 229 LPLSGGGY--LADTPGFNQPSL------LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG----------EPGCVV 290 (391)
Q Consensus 229 v~~~~~~~--l~Dtpg~~~~~l------~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~----------eP~~ll 290 (391)
.++..+.. ....+++..... .......+.+..+. .||+||+||++||+++ +. +|++++
T Consensus 81 ~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~---~lS~G~~~r~~la~al-~~~p~~~~~~~~~~~~ll 156 (213)
T cd03279 81 TFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVS---TLSGGETFLASLSLAL-ALSEVLQNRGGARLEALF 156 (213)
T ss_pred EEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCcc---ccCHHHHHHHHHHHHH-HhHHHhhhccCCCCCEEE
Confidence 55543221 112223322211 12234555666676 8999999999999999 63 578999
Q ss_pred ec------CHHHHHHHHHHHHHHHHH
Q 016339 291 KG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 291 lD------D~~~~~~~~~ll~el~~~ 310 (391)
+| |+.....+.+++.+++++
T Consensus 157 lDEp~~~lD~~~~~~~~~~l~~~~~~ 182 (213)
T cd03279 157 IDEGFGTLDPEALEAVATALELIRTE 182 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 99 788888899999888643
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-12 Score=124.15 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=40.8
Q ss_pred HhhhchhHHhhcCccccccccccccccc----CCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 256 LAQTFPEIKEMLKANEPAKCSFNNCLHL----GEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 256 l~~~~p~~~~~LSgGq~qr~~iaralh~----~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
..+..+. .||+||+||+++|+++ + ..|+++++| |+.....+.+++.++.
T Consensus 159 ~~~~~~~---~lS~G~~qr~~la~al-~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~ 217 (251)
T cd03273 159 VWKESLT---ELSGGQRSLVALSLIL-ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF 217 (251)
T ss_pred hhccccc---ccCHHHHHHHHHHHHH-HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc
Confidence 3345555 8999999999999988 5 578999999 7888888889888874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-12 Score=129.77 Aligned_cols=143 Identities=23% Similarity=0.282 Sum_probs=91.8
Q ss_pred cCCeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+|+..|+|.| +....+..++|-| -...++||||||+||||||.+|.|.+ .|..|+.+-+
T Consensus 587 LGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl------------~P~~GE~RKn------- 647 (807)
T KOG0066|consen 587 LGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL------------DPNDGELRKN------- 647 (807)
T ss_pred eecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC------------CCCcchhhcc-------
Confidence 3445566666 4555667777777 45789999999999999999999999 7887775432
Q ss_pred ccccCCCcceeeeEEEEeccCCCc--ccCCc------ccc------hHHHHhCChhHHhhhchhHHhhcCcccccccccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY--LADTP------GFN------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~--l~Dtp------g~~------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
.+-+++++.+.++-. ...|| +|+ ...|-.+++...++..- ...|||||+-||+||
T Consensus 648 ---------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTik--ikdLSGGQKaRVala 716 (807)
T KOG0066|consen 648 ---------HRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIK--IKDLSGGQKARVALA 716 (807)
T ss_pred ---------ceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEe--eeecCCcchHHHHHH
Confidence 122333333332111 11222 111 12233344443333221 127999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
... +..|+++|+| |.++...+.+.|.+..
T Consensus 717 eLa-l~~PDvlILDEPTNNLDIESIDALaEAIney~ 751 (807)
T KOG0066|consen 717 ELA-LGGPDVLILDEPTNNLDIESIDALAEAINEYN 751 (807)
T ss_pred HHh-cCCCCEEEecCCCCCcchhhHHHHHHHHHhcc
Confidence 877 8999999999 6777777777666643
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=125.44 Aligned_cols=145 Identities=28% Similarity=0.362 Sum_probs=108.8
Q ss_pred cccccceeEEEEEecCCCC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCC-----
Q 016339 73 PVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES----- 146 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~-~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~----- 146 (391)
.+.-.|+|+.+..+.+|.+ -+..|.+|...... .+..+|++||+||++++....|..+|.+-++..+++|.-.
T Consensus 171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~d~-~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~ 249 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDP-SKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQL 249 (562)
T ss_pred HHhhcceEEEEeecCCccccCChhHHHHHhcccc-ccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccc
Confidence 4678899999999999954 56789999864333 3667889999999999999999999988777777777522
Q ss_pred -c-------cchHHHhhc------------c---c-----------------------C------CEEEEEecCCCcHHH
Q 016339 147 -K-------LGLDSLLQR------------L---R-----------------------D------QTTVIVGPSGVGKSS 174 (391)
Q Consensus 147 -~-------~~L~~ls~~------------i---~-----------------------G------e~vaLvGpSGsGKST 174 (391)
. ...++++.. + + | -++|+||-+++||||
T Consensus 250 ~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSS 329 (562)
T KOG1424|consen 250 ESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSS 329 (562)
T ss_pred cccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhH
Confidence 1 111111100 0 0 0 478999999999999
Q ss_pred HHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHH
Q 016339 175 LINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (391)
Q Consensus 175 LLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~ 247 (391)
+||+|+|.- ...|+..+| -|++++-+++..+..+.|+||...+.
T Consensus 330 TINaLvG~K-------------------------kVsVS~TPG----kTKHFQTi~ls~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 330 TINALVGRK-------------------------KVSVSSTPG----KTKHFQTIFLSPSVCLCDCPGLVFPS 373 (562)
T ss_pred HHHHHhcCc-------------------------eeeeecCCC----CcceeEEEEcCCCceecCCCCccccC
Confidence 999999975 235677777 56777778888888899999976554
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.5e-13 Score=135.95 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=88.2
Q ss_pred EEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-cccccccccc
Q 016339 140 LFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVSTKS 216 (391)
Q Consensus 140 v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~~~~ 216 (391)
+.|.|.++ ..+++++|-+ .+..+++||||||||||||++++|.+ .|+.|.+.-+- ..+....++
T Consensus 395 v~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl------------~p~~G~vs~~~H~~~~~y~Qh- 461 (614)
T KOG0927|consen 395 VSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL------------QPTIGMVSRHSHNKLPRYNQH- 461 (614)
T ss_pred cccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc------------ccccccccccccccchhhhhh-
Confidence 44445433 4667777777 78899999999999999999999999 88888875332 222222221
Q ss_pred CCCcceeeeEEE--EeccCCC-cccC-C-cccchHHHHhCChhHHhh-hchhHHhhcCcccccccccccccccCCCcEEE
Q 016339 217 GRGKHTTRHVSL--LPLSGGG-YLAD-T-PGFNQPSLLKVTKQSLAQ-TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290 (391)
Q Consensus 217 ~~~~~ttr~i~~--v~~~~~~-~l~D-t-pg~~~~~l~~~~~~~l~~-~~p~~~~~LSgGq~qr~~iaralh~~eP~~ll 290 (391)
.....-+ -++.+-. ...| + -+.....+..+++..-.. ..-. +||+|||.||.||+.. +..|.++|
T Consensus 462 -----~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~---~LS~Gqr~rVlFa~l~-~kqP~lLl 532 (614)
T KOG0927|consen 462 -----LAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMS---QLSDGQRRRVLFARLA-VKQPHLLL 532 (614)
T ss_pred -----hHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchh---hcccccchhHHHHHHH-hcCCcEEE
Confidence 1100000 0000000 0001 0 011122334455543332 3333 8999999999999999 99999999
Q ss_pred ec------CHHHHHHHHHHHHH
Q 016339 291 KG------DWERYQYYFQLLDE 306 (391)
Q Consensus 291 lD------D~~~~~~~~~ll~e 306 (391)
+| |.+....+.+.|.+
T Consensus 533 LDEPtnhLDi~tid~laeaiNe 554 (614)
T KOG0927|consen 533 LDEPTNHLDIETIDALAEAINE 554 (614)
T ss_pred ecCCCcCCCchhHHHHHHHHhc
Confidence 99 66666666666655
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.4e-12 Score=115.61 Aligned_cols=123 Identities=17% Similarity=0.203 Sum_probs=76.1
Q ss_pred CEEEEEecCCCcHHHHHHHHh----cCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCC
Q 016339 160 QTTVIVGPSGVGKSSLINALR----SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~----gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~ 235 (391)
.+++|+||||||||||+++|. |.. .|..|.+..+...+.. .. ....+.+.++...+
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~~l~G~~------------~~~~~~~~~~~~~i~~-~~-------~~~~v~~~f~~~~~ 82 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKYALTGEL------------PPNSKGGAHDPKLIRE-GE-------VRAQVKLAFENANG 82 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCC------------CcccccccchHHHHhC-CC-------CcEEEEEEEEeCCC
Confidence 399999999999999999995 766 5555544311111111 00 12234444433210
Q ss_pred ---------cccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccc------cccccccccCCCcEEEec------CH
Q 016339 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK------CSFNNCLHLGEPGCVVKG------DW 294 (391)
Q Consensus 236 ---------~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr------~~iaralh~~eP~~lllD------D~ 294 (391)
.+.++-.+.. .-......+..+. .||+||+|+ +++|+++ ...|+++++| |+
T Consensus 83 ~~~~v~r~~~~~~~~~~~~----~~~~~~~~~~~~~---~LS~G~~~~~~la~rlala~al-~~~p~illlDEP~~~LD~ 154 (204)
T cd03240 83 KKYTITRSLAILENVIFCH----QGESNWPLLDMRG---RCSGGEKVLASLIIRLALAETF-GSNCGILALDEPTTNLDE 154 (204)
T ss_pred CEEEEEEEhhHhhceeeec----hHHHHHHHhcCcc---ccCccHHHHHHHHHHHHHHHHh-ccCCCEEEEcCCccccCH
Confidence 0111100000 0012234455666 999999996 7889999 9999999999 77
Q ss_pred HHHH-HHHHHHHHHHHH
Q 016339 295 ERYQ-YYFQLLDEIRIR 310 (391)
Q Consensus 295 ~~~~-~~~~ll~el~~~ 310 (391)
.... .+.+++.+++..
T Consensus 155 ~~~~~~l~~~l~~~~~~ 171 (204)
T cd03240 155 ENIEESLAEIIEERKSQ 171 (204)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 8888 899999888653
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-12 Score=130.12 Aligned_cols=199 Identities=17% Similarity=0.137 Sum_probs=107.5
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec-CccccccccccCCCcceee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~-g~~v~~v~~~~~~~~~ttr 224 (391)
...+..++|.+ +|-.+.|.||||||||||.++|.|++ +...|...+- ...+-+++|+|-.+..+-+
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW------------Pvy~g~L~~P~~~~mFYIPQRPYms~gtlR 562 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW------------PVYNGLLSIPRPNNIFYIPQRPYMSGGTLR 562 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC------------cccCCeeecCCCcceEeccCCCccCcCccc
Confidence 34678899999 89999999999999999999999998 3333333221 1123345555433222223
Q ss_pred eEEEEeccCCCcccCCcccchHH----HHhCChhHHhhh------chhHHhhcCcccccccccccccccCCCcEEEec--
Q 016339 225 HVSLLPLSGGGYLADTPGFNQPS----LLKVTKQSLAQT------FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-- 292 (391)
Q Consensus 225 ~i~~v~~~~~~~l~Dtpg~~~~~----l~~~~~~~l~~~------~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-- 292 (391)
+-..+|.....+ ...|+.+.. +..+.++.++.+ ..+-.+.|||||+||+.+||.. -|.|..+++|
T Consensus 563 DQIIYPdS~e~~--~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~-yHrPkyalLDEc 639 (728)
T KOG0064|consen 563 DQIIYPDSSEQM--KRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMF-YHRPKYALLDEC 639 (728)
T ss_pred ceeecCCcHHHH--HhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHH-hcCcchhhhhhh
Confidence 322222210000 012343333 223444444332 1223458999999999999999 9999999999
Q ss_pred ----CHHHHHHHHHHHHHHHHHHhh--hhhhhhcccccccccccccCcccccCCccccccccccchhhhhHHHHHHHhh
Q 016339 293 ----DWERYQYYFQLLDEIRIREEF--QLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDE 365 (391)
Q Consensus 293 ----D~~~~~~~~~ll~el~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~~rr~~~~~~~~~~~~ 365 (391)
.++....+.+..+......-. +..+...-. .--+..++.|.-+-++.-. .-|-|-..+.|+|.+.|+.
T Consensus 640 TsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h--~~ll~~dg~g~~q~~~ln~---~~rls~~Eek~eLe~qLa~ 713 (728)
T KOG0064|consen 640 TSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYH--THLLEFDGEGGWQFRALNT---EERLSIEEEKQELESQLAR 713 (728)
T ss_pred hcccccchHHHHHHHHHhcCceEEEeecCccHHHHH--HHHHhccCCCCeeeccCCh---hhhcccHHHHHHHHHHHhh
Confidence 233333444444432111000 001100001 1112224444444444322 4456667788888777754
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-12 Score=112.50 Aligned_cols=143 Identities=21% Similarity=0.242 Sum_probs=88.6
Q ss_pred hHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEE
Q 016339 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (391)
Q Consensus 150 L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~ 228 (391)
|-.+|..+ .|+++-+|||||||||||+-.++|+. |-+|+|.|+|.++...+... ..++-+|
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-------------~~sGsi~~~G~~l~~~~~~e-----LArhRAY 76 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-------------SGSGSIQFAGQPLEAWSATE-----LARHRAY 76 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCC-------------CCCceEEECCcchhHHhHhH-----HHHHHHH
Confidence 44555666 79999999999999999999999985 78999999999875443221 1233333
Q ss_pred EeccCCC--------cc-cCCccc-chHHHHhC-ChhHHhhhchhHHhhcCcccccccccccccccCCC------cEEEe
Q 016339 229 LPLSGGG--------YL-ADTPGF-NQPSLLKV-TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEP------GCVVK 291 (391)
Q Consensus 229 v~~~~~~--------~l-~Dtpg~-~~~~l~~~-~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP------~~lll 291 (391)
+.+...- |+ .-.|.. +...+..+ +.-.+-++.+....+|||||=|||.+|-...---| .++++
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 3332110 00 011211 11112211 22234456666666999999999999854323333 46788
Q ss_pred c------CHHHHHHHHHHHHHHHHH
Q 016339 292 G------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 292 D------D~~~~~~~~~ll~el~~~ 310 (391)
| |......+-.++.++...
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c~~ 181 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALCQQ 181 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhC
Confidence 8 555556666777776654
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-11 Score=111.77 Aligned_cols=138 Identities=17% Similarity=0.107 Sum_probs=79.2
Q ss_pred hHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEE
Q 016339 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229 (391)
Q Consensus 150 L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v 229 (391)
++++.+.+...+.+|+||||+|||||+.+|.....+ ... ...-+.....+-.. + . ....+.+.
T Consensus 12 ~~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~------------~~~-~~~r~~~~~~~i~~-~--~-~~~~i~~~ 74 (198)
T cd03276 12 HRHLQIEFGPRVNFIVGNNGSGKSAILTALTIGLGG------------KAS-DTNRGSSLKDLIKD-G--E-SSAKITVT 74 (198)
T ss_pred eeeeEEecCCCeEEEECCCCCcHHHHHHHHHHHhcC------------Ccc-cccccccHHHHhhC-C--C-CeEEEEEE
Confidence 344555554458899999999999999998754310 000 00001111111110 1 0 12334555
Q ss_pred eccCCCcccCCccc--chHHH-HhCChhHHhhhchhHHhhcCcccccccccccccc---cCCCcEEEec------CHHHH
Q 016339 230 PLSGGGYLADTPGF--NQPSL-LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH---LGEPGCVVKG------DWERY 297 (391)
Q Consensus 230 ~~~~~~~l~Dtpg~--~~~~l-~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh---~~eP~~lllD------D~~~~ 297 (391)
+...+.+ +++.. ....+ ..+......+..+. .||+||+||++||+|+- +.+|+++|+| |+...
T Consensus 75 ~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~---~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 75 LKNQGLD--ANPLCVLSQDMARSFLTSNKAAVRDVK---TLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred EEcCCcc--CCcCCHHHHHHHHHHhccccccCCccc---ccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 5443322 22221 11111 11111334455666 99999999999999882 3899999999 77888
Q ss_pred HHHHHHHHHHHH
Q 016339 298 QYYFQLLDEIRI 309 (391)
Q Consensus 298 ~~~~~ll~el~~ 309 (391)
..+.++|.++..
T Consensus 150 ~~~~~~l~~~~~ 161 (198)
T cd03276 150 KISTDLLVKEAK 161 (198)
T ss_pred HHHHHHHHHHHh
Confidence 888888888754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-11 Score=112.42 Aligned_cols=163 Identities=21% Similarity=0.286 Sum_probs=115.7
Q ss_pred eeEEEEc----CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 138 EPLFCSV----ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 138 ~~v~~s~----~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.++++.+ |-..+++.+|+++ +|++-++||.||||||-+.++|.|... ++| ..+.....|++.++-.+
T Consensus 7 rnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k-------dnW-~vTADR~Rf~~idLL~L 78 (330)
T COG4170 7 RNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-------DNW-RVTADRMRFDDIDLLRL 78 (330)
T ss_pred cceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc-------cce-EEEhhhcccccchhhcC
Confidence 4454444 4456899999999 999999999999999999999999862 111 33455566777666666
Q ss_pred ccccCCCcceeeeEEEEeccCCCc----------ccC-Ccccc----------------hHHHHhCChh---HHhhhchh
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY----------LAD-TPGFN----------------QPSLLKVTKQ---SLAQTFPE 262 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~----------l~D-tpg~~----------------~~~l~~~~~~---~l~~~~p~ 262 (391)
+++. +.+-..++++++|++.... +++ .|... -..+..+++. ++...||.
T Consensus 79 ~Pr~-RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ 157 (330)
T COG4170 79 SPRE-RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY 157 (330)
T ss_pred ChHH-hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc
Confidence 5542 2222346788888762211 111 13211 1223355553 56778899
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+|..||-|+|.||.|+ ++.|.++|.| ++....+++.+|..+++....
T Consensus 158 ---ElTeGE~QKVMIA~A~-AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~T 210 (330)
T COG4170 158 ---ELTEGECQKVMIAIAL-ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNT 210 (330)
T ss_pred ---hhccCcceeeeeehhh-ccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCc
Confidence 9999999999999999 9999999999 677889999999999876544
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.3e-12 Score=119.88 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=44.7
Q ss_pred hCChhH-HhhhchhHHhhcCcccccccccccccccCC---CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 250 KVTKQS-LAQTFPEIKEMLKANEPAKCSFNNCLHLGE---PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 250 ~~~~~~-l~~~~p~~~~~LSgGq~qr~~iaralh~~e---P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+++.. .++..+. .|||||+||+++|+++ ..+ |+++|+| |+.....+.+++.++.+.
T Consensus 155 ~vgL~~l~l~~~~~---~LSgGe~QRl~LAraL-~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~ 221 (261)
T cd03271 155 DVGLGYIKLGQPAT---TLSGGEAQRIKLAKEL-SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK 221 (261)
T ss_pred HcCCchhhhcCccc---cCCHHHHHHHHHHHHH-hcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 344443 2344444 8999999999999999 664 7999999 888999999999988654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-11 Score=119.13 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=98.3
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
..++++||+.+ .|++++|+|+||+||||++++|+|..- ....+.+.|++|.+.+-...++.+-+ +.....-..
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~----~~~ee~y~p~sg~v~vp~nt~~a~iP--ge~Ep~f~~ 469 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK----GRGEEKYRPDSGKVEVPKNTVSALIP--GEYEPEFGE 469 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh----cccccccCCCCCceeccccchhhccC--cccccccCc
Confidence 45789999999 899999999999999999999999752 23456679999998764332322211 100000011
Q ss_pred EEEEeccCCCcccCCccc---chHHHHhCChhH--HhhhchhHHhhcCcccccccccccccccCCCcEEEec------CH
Q 016339 226 VSLLPLSGGGYLADTPGF---NQPSLLKVTKQS--LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DW 294 (391)
Q Consensus 226 i~~v~~~~~~~l~Dtpg~---~~~~l~~~~~~~--l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~ 294 (391)
..++. .+.+++|- ....+...++.+ +-...+. .||.||+.|..||.|+ ...|++++.| |+
T Consensus 470 ~tile-----hl~s~tGD~~~AveILnraGlsDAvlyRr~f~---ELStGQKeR~KLAkll-aerpn~~~iDEF~AhLD~ 540 (593)
T COG2401 470 VTILE-----HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFS---ELSTGQKERAKLAKLL-AERPNVLLIDEFAAHLDE 540 (593)
T ss_pred hhHHH-----HHhhccCchhHHHHHHHhhccchhhhhhccHh---hcCcchHHHHHHHHHH-hcCCCcEEhhhhhhhcCH
Confidence 11110 12233333 444555555543 2223344 8999999999999999 9999999998 67
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016339 295 ERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 295 ~~~~~~~~ll~el~~~~ 311 (391)
.....+..-+.++..+.
T Consensus 541 ~TA~rVArkiselaRe~ 557 (593)
T COG2401 541 LTAVRVARKISELAREA 557 (593)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666666666665443
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-11 Score=112.83 Aligned_cols=43 Identities=12% Similarity=-0.059 Sum_probs=37.7
Q ss_pred hcCcccccccccccccccC----CCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLG----EPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~----eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.||+||+||++||+++ +. .|+++|+| |+.....+.+++.++..
T Consensus 155 ~LS~G~k~rl~la~al-~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~ 207 (247)
T cd03275 155 NLSGGEKTMAALALLF-AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG 207 (247)
T ss_pred HcCHHHHHHHHHHHHH-HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc
Confidence 8999999999999998 54 48999999 78888888898888754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=114.05 Aligned_cols=148 Identities=28% Similarity=0.370 Sum_probs=106.1
Q ss_pred cccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~ 149 (391)
+..+...|.|+-|..+..|.-. ...+++.+..+ ..+++.++||||+||+|.+.+++|..+|+.-|-.+.+..-.....
T Consensus 141 rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~ 219 (435)
T KOG2484|consen 141 RKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-HGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQN 219 (435)
T ss_pred HHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-cCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccccccc
Confidence 4467899999999999999544 55778776432 234999999999999999999999999988766555544322211
Q ss_pred h-------------HHHhhcc----c------CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 150 L-------------DSLLQRL----R------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 150 L-------------~~ls~~i----~------Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
- +.+--.+ . --.++|||-+++||||+||.|....
T Consensus 220 ~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k----------------------- 276 (435)
T KOG2484|consen 220 SNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRK----------------------- 276 (435)
T ss_pred ccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhc-----------------------
Confidence 1 1111111 1 1378999999999999999998765
Q ss_pred ccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHH
Q 016339 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248 (391)
Q Consensus 207 ~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l 248 (391)
+..+...+| .|+.+..+.++.+..+.|.||+.....
T Consensus 277 --~C~vg~~pG----vT~smqeV~Ldk~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 277 --ACNVGNVPG----VTRSMQEVKLDKKIRLLDSPGIVPPSI 312 (435)
T ss_pred --cccCCCCcc----chhhhhheeccCCceeccCCceeecCC
Confidence 122333344 788888888888888999999865443
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-11 Score=135.92 Aligned_cols=149 Identities=13% Similarity=0.148 Sum_probs=106.9
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc-cccccCCCcce
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-VSTKSGRGKHT 222 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~-v~~~~~~~~~t 222 (391)
++.+.|++|+=.+ +|..+||+|+||||||||||.|+|.... --.+|+|.++|..... . .
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~----------G~I~Gdi~i~G~p~~q~t---------F 862 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG----------GYIEGDILISGFPKDQET---------F 862 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc----------ceEEeEEEECCeeCchhh---------h
Confidence 5667899999888 8999999999999999999999998632 3468999999876541 1 1
Q ss_pred eeeEEEEeccC-C---C----------ccc--------CCcccchHHHHhCChhHHhhhchh-HHhhcCccccccccccc
Q 016339 223 TRHVSLLPLSG-G---G----------YLA--------DTPGFNQPSLLKVTKQSLAQTFPE-IKEMLKANEPAKCSFNN 279 (391)
Q Consensus 223 tr~i~~v~~~~-~---~----------~l~--------Dtpg~~~~~l~~~~~~~l~~~~p~-~~~~LSgGq~qr~~iar 279 (391)
.|.++++.|.. + . .+. +...+.+..++.++++++++.... -..-||..||+|+.||=
T Consensus 863 ~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 863 ARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGV 942 (1391)
T ss_pred ccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEE
Confidence 23445554431 0 0 011 001234445556677777665433 01349999999999999
Q ss_pred ccccCCC-cEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 280 CLHLGEP-GCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 280 alh~~eP-~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
=| +.+| .++++| |......++++++++....+.
T Consensus 943 EL-vA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqt 982 (1391)
T KOG0065|consen 943 EL-VANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQT 982 (1391)
T ss_pred EE-ecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCe
Confidence 99 9999 677788 788889999999999876555
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-11 Score=120.83 Aligned_cols=136 Identities=17% Similarity=0.217 Sum_probs=88.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCc---------c--eecCccccccccccCCCcc-eeee
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS---------K--WFEDQRVGEVSTKSGRGKH-TTRH 225 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~---------I--~~~g~~v~~v~~~~~~~~~-ttr~ 225 (391)
+|++++|+||||.||||.+++|+|.. .|.-|+ | .|-|..+...+...-.+.- ....
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaGel------------~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K 166 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAGEL------------KPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHK 166 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhCcc------------ccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecc
Confidence 79999999999999999999999998 444332 1 2333333222221100000 0111
Q ss_pred EEE---EeccCCCc------ccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCHH-
Q 016339 226 VSL---LPLSGGGY------LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE- 295 (391)
Q Consensus 226 i~~---v~~~~~~~------l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~~- 295 (391)
.++ ++--..|. ..|..|..+..++.+++..+.++-.. .|||||.||++||.|+ ..+.++.++|.|.
T Consensus 167 ~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~---~LSGGELQr~aIaa~l-~rdADvY~FDEpsS 242 (591)
T COG1245 167 PQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVS---ELSGGELQRVAIAAAL-LRDADVYFFDEPSS 242 (591)
T ss_pred hHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhh---hcCchHHHHHHHHHHH-hccCCEEEEcCCcc
Confidence 111 22112222 23456777777788888888888777 9999999999999999 9999999999544
Q ss_pred -----HHHHHHHHHHHHHH
Q 016339 296 -----RYQYYFQLLDEIRI 309 (391)
Q Consensus 296 -----~~~~~~~ll~el~~ 309 (391)
.+-....+++++.+
T Consensus 243 yLDi~qRl~~ar~Irel~~ 261 (591)
T COG1245 243 YLDIRQRLNAARVIRELAE 261 (591)
T ss_pred cccHHHHHHHHHHHHHHhc
Confidence 44444455666554
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=112.14 Aligned_cols=107 Identities=28% Similarity=0.377 Sum_probs=78.1
Q ss_pred cccccccceeEEEEEecCCC-CCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCe-eEEEEcCCcc
Q 016339 71 DPPVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE-PLFCSVESKL 148 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~-~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~-~v~~s~~~~~ 148 (391)
...+.++|.+++|+....+. .....+.++| +..++++++|+||+|+.+.+.. ...+..+|+. .+.+|..++.
T Consensus 75 ~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l---~~~~~piilv~NK~D~~~~~~~---~~~~~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 75 ELAIEEADVILFVVDGRAGLTPADEEIAKIL---RKSNKPVILVVNKVDGPDEEAD---AYEFYSLGLGEPYPISAEHGR 148 (435)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCcEEEEEECccCccchhh---HHHHHhcCCCCCEEEEeeCCC
Confidence 34578999999999987642 2233455555 4568999999999998653211 1344567874 7889998888
Q ss_pred chHHHhhcc--------------cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLLQRL--------------RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls~~i--------------~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++++-..+ ..-.++|+|.+|+|||||+|.|.|..
T Consensus 149 gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~ 197 (435)
T PRK00093 149 GIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE 197 (435)
T ss_pred CHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 777765444 12369999999999999999999865
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-10 Score=104.58 Aligned_cols=152 Identities=15% Similarity=0.089 Sum_probs=92.6
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+..+.++|. ....+-++|+.+ .|....+||.|||||||||++|+|.. -.-.|.|.+.|.+.-.
T Consensus 15 evsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh------------mv~~~~v~VlgrsaFh-- 80 (291)
T KOG2355|consen 15 EVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH------------MVGGGVVQVLGRSAFH-- 80 (291)
T ss_pred EEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc------------cccCCeEEEcCcCccc--
Confidence 3456677774 346778888888 79999999999999999999999987 3333556555543200
Q ss_pred cccCCCcceeeeEEEEecc--------------CC--------CcccCCcccchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 214 TKSGRGKHTTRHVSLLPLS--------------GG--------GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~--------------~~--------~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
+.+. ....+..|+.-+ .. +.-.+.|..+++.+..+++. +..+ -+ .+|.||
T Consensus 81 -Dt~l--~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDId-l~WR-mH---kvSDGq 152 (291)
T KOG2355|consen 81 -DTSL--ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDID-LRWR-MH---KVSDGQ 152 (291)
T ss_pred -cccc--cccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheecc-ceEE-Ee---eccccc
Confidence 0000 000112222111 00 00112233333333222221 1111 23 689999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++|++|++-| ++.-+++++| |.-.+..+++++++-.++
T Consensus 153 rRRVQicMGL-L~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~ 196 (291)
T KOG2355|consen 153 RRRVQICMGL-LKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQ 196 (291)
T ss_pred hhhhHHHHhc-ccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhh
Confidence 9999999999 8888999998 667888888888875443
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=111.26 Aligned_cols=107 Identities=26% Similarity=0.466 Sum_probs=79.7
Q ss_pred cccccccceeEEEEEecCCC-CCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCCcc
Q 016339 71 DPPVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKL 148 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~-~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~~~ 148 (391)
...+.++|.+++|+....+. .....+.++| +..++++++|+||+|+...+... ..+..+|+ +.+.+|..++.
T Consensus 73 ~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l---~~~~~piilVvNK~D~~~~~~~~---~~~~~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 73 EIAIEEADVILFVVDGREGLTPEDEEIAKWL---RKSGKPVILVANKIDGKKEDAVA---AEFYSLGFGEPIPISAEHGR 146 (429)
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHH---HHhCCCEEEEEECccCCcccccH---HHHHhcCCCCeEEEeCCcCC
Confidence 34678999999999887642 2233456666 45789999999999997654321 34567888 78999998888
Q ss_pred chHHHhhcc------cC---------CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLLQRL------RD---------QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls~~i------~G---------e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++++...+ .+ -.++++|.+|||||||+|.|.|..
T Consensus 147 gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~ 196 (429)
T TIGR03594 147 GIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE 196 (429)
T ss_pred ChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC
Confidence 877665443 11 258999999999999999999865
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.5e-11 Score=120.57 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=45.6
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+-+.+++++|.....++++.|++ .|+.++|+|+|||||||+|++|.|..
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 34578899999999999999999 99999999999999999999999988
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-10 Score=118.90 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=42.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
-...+.++|+.+..|.+-++.+ .|..++|+|+||+||||||++|+.
T Consensus 82 ~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 82 HIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 3467888999999999999999 899999999999999999999997
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=111.43 Aligned_cols=107 Identities=29% Similarity=0.394 Sum_probs=76.7
Q ss_pred cccccccceeEEEEEecCCC-CCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCCcc
Q 016339 71 DPPVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKL 148 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~-~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~~~ 148 (391)
...+.++|.+++|+.+..+. .....+.+++ ...++|+++|+||+|+..... + . ..+..+|+ .++.+|..++.
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l---~~~~~piilV~NK~Dl~~~~~-~-~-~~~~~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVL---RRSGKPVILAANKVDDERGEA-D-A-AALWSLGLGEPHPVSALHGR 185 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCCEEEEEECccCCccch-h-h-HHHHhcCCCCeEEEEcCCCC
Confidence 34577999999999987652 2233344444 567899999999999965321 1 1 23345666 56889998888
Q ss_pred chHHHhhcc-----c----------CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLLQRL-----R----------DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls~~i-----~----------Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++++-..+ + .-.++|+|++|||||||+|.|++..
T Consensus 186 gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~ 235 (472)
T PRK03003 186 GVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEE 235 (472)
T ss_pred CcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 877764333 1 1379999999999999999999875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-10 Score=115.28 Aligned_cols=148 Identities=15% Similarity=0.192 Sum_probs=99.8
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEE
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~ 227 (391)
.++++||++ +||+++|.|-=|||+|-|+++|.|.. ++.+|+|.++|+.+..-++... ....++
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~------------~~~~G~i~l~G~~v~~~sp~~A----i~~Gi~ 337 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR------------PASSGEILLDGKPVRIRSPRDA----IKAGIA 337 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC------------cCCCceEEECCEEccCCCHHHH----HHcCCE
Confidence 488999999 99999999999999999999999987 8899999999997754443211 123344
Q ss_pred EEeccCC--Cc-----ccCCcc-----------cchHHHHhC----ChhHHhhhchh---HHhhcCcccccccccccccc
Q 016339 228 LLPLSGG--GY-----LADTPG-----------FNQPSLLKV----TKQSLAQTFPE---IKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 228 ~v~~~~~--~~-----l~Dtpg-----------~~~~~l~~~----~~~~l~~~~p~---~~~~LSgGq~qr~~iaralh 282 (391)
|++-+.. |. +.+|-. +....-+.. -...+.-+.|. ....||||-||+|.||+++
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL- 416 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWL- 416 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHH-
Confidence 4444311 11 111100 000000000 00001111111 1238999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
..+|+++|+| |...+..+++++.++..+...
T Consensus 417 ~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~a 453 (500)
T COG1129 417 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453 (500)
T ss_pred hcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCE
Confidence 9999999999 778999999999999877444
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.2e-10 Score=109.90 Aligned_cols=109 Identities=26% Similarity=0.337 Sum_probs=81.6
Q ss_pred cccccceeEEEEEecCCC-CCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEE------EEcC
Q 016339 73 PVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF------CSVE 145 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~-~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~------~s~~ 145 (391)
.+-..|.++-|+.+..|. .....++.||.. +...+..+.|||||||++......|...+.. .|..+. -+||
T Consensus 210 ViDSSDVvvqVlDARDPmGTrc~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lSk-eyPTiAfHAsi~nsfG 287 (572)
T KOG2423|consen 210 VIDSSDVVVQVLDARDPMGTRCKHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLSK-EYPTIAFHASINNSFG 287 (572)
T ss_pred hhcccceeEEeeeccCCcccccHHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHhh-hCcceeeehhhcCccc
Confidence 356889999999998884 446789999963 5678899999999999999999999887754 344443 3556
Q ss_pred CccchHHHhh----cc--cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQ----RL--RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~----~i--~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++..+.-+.. .. +--.+++||-+++||||+||+|....
T Consensus 288 KgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~Kk 331 (572)
T KOG2423|consen 288 KGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKK 331 (572)
T ss_pred hhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcc
Confidence 5543332221 11 34578999999999999999998764
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-09 Score=126.95 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=46.5
Q ss_pred hCChhHH-hhhchhHHhhcCccccccccccccccc---CCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 250 KVTKQSL-AQTFPEIKEMLKANEPAKCSFNNCLHL---GEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 250 ~~~~~~l-~~~~p~~~~~LSgGq~qr~~iaralh~---~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+++..+ ++..+. .|||||+||++||+++ + .+|+++|+| |+.....++++|.++.+.
T Consensus 795 ~vGL~~l~l~q~~~---tLSGGE~QRV~LAraL-~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~ 861 (1809)
T PRK00635 795 SLGLDYLPLGRPLS---SLSGGEIQRLKLAYEL-LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ 861 (1809)
T ss_pred HcCCcchhhcCccc---cCCHHHHHHHHHHHHH-hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 3444443 455555 8999999999999999 5 699999999 889999999999998754
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.6e-09 Score=113.66 Aligned_cols=106 Identities=26% Similarity=0.350 Sum_probs=76.7
Q ss_pred ccccccceeEEEEEecCCCC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCCccc
Q 016339 72 PPVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~-~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~~~~ 149 (391)
..+.++|.+++|+....... ....+.++| +..++|+++|+||+|+...... ...+..+|+ .++.+|..++.+
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~L---r~~~~pvIlV~NK~D~~~~~~~---~~~~~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRML---RRAGKPVVLAVNKIDDQASEYD---AAEFWKLGLGEPYPISAMHGRG 423 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HhcCCCEEEEEECcccccchhh---HHHHHHcCCCCeEEEECCCCCC
Confidence 35689999999999875422 233455555 5689999999999999654321 123445666 467889988888
Q ss_pred hHHHhhcc-----c----C--------CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 150 LDSLLQRL-----R----D--------QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 150 L~~ls~~i-----~----G--------e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++++-..+ . . -.++|+|.+|||||||+|.|.+..
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~ 474 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEE 474 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 87765433 1 1 369999999999999999999865
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=94.31 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=37.2
Q ss_pred hcCcccccccccccccc---cCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLH---LGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh---~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.||+||+|++.++.++. +.+|+++|+| |+.....+++++.++...
T Consensus 126 ~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~ 179 (213)
T cd03277 126 HQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACK 179 (213)
T ss_pred hccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhc
Confidence 89999999987765431 5799999999 788889999999887654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-08 Score=92.23 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=37.3
Q ss_pred cCcccccccccccccc---cCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLH---LGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 267 LSgGq~qr~~iaralh---~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+||+|++++|+++- ...|+++++| |+.....+.+++.++...
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~ 147 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH 147 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999882 2689999999 788888888888887543
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-09 Score=108.55 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=84.1
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-ccccccccccCCCcceeeeE
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVSTKSGRGKHTTRHV 226 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~~~~~~~~~ttr~i 226 (391)
.+.++++.+ ....++++|+||+||||+++++.+.. .|+.|.+.+.+ +++++..+..- .+...++
T Consensus 379 ~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l------------~~~rgi~~~~~r~ri~~f~Qhhv--d~l~~~v 444 (582)
T KOG0062|consen 379 WRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDL------------TPTRGIVGRHPRLRIKYFAQHHV--DFLDKNV 444 (582)
T ss_pred hhhccCCccchhhhhheeccCchhHHHHHHHHhccC------------CcccceeeecccceecchhHhhh--hHHHHHh
Confidence 555666666 45679999999999999999999988 77877775543 34444333210 0000111
Q ss_pred EEEeccCCCcccCCcccc----hHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHH
Q 016339 227 SLLPLSGGGYLADTPGFN----QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWER 296 (391)
Q Consensus 227 ~~v~~~~~~~l~Dtpg~~----~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~ 296 (391)
..+. ..-.--||.. ...+..+++..-+...+ -..|||||+-|++||.|. ..+|.++|+| |.+.
T Consensus 445 ~~vd----~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s--i~~LSGGQKsrvafA~~~-~~~PhlLVLDEPTNhLD~ds 517 (582)
T KOG0062|consen 445 NAVD----FMEKSFPGKTEEEIRRHLGSFGLSGELALQS--IASLSGGQKSRVAFAACT-WNNPHLLVLDEPTNHLDRDS 517 (582)
T ss_pred HHHH----HHHHhCCCCCHHHHHHHHHhcCCCchhhhcc--ccccCCcchhHHHHHHHh-cCCCcEEEecCCCccccHHH
Confidence 0000 0011114433 33455666654333333 127999999999999999 9999999999 4455
Q ss_pred HHHHHHHHHH
Q 016339 297 YQYYFQLLDE 306 (391)
Q Consensus 297 ~~~~~~ll~e 306 (391)
...+-+.|..
T Consensus 518 l~AL~~Al~~ 527 (582)
T KOG0062|consen 518 LGALAKALKN 527 (582)
T ss_pred HHHHHHHHHh
Confidence 5555444444
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=98.72 E-value=7e-09 Score=86.31 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=41.2
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
..+|+++++.+ +|++++|+||||||||||+++|. +|.+.++|.++.....
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------------------~G~i~~~g~di~~~~~ 52 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------------------KRKHRLVGDDNVEIRE 52 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------------------CCeEEEeeEeHHHhhh
Confidence 35788999999 78999999999999999999975 2567787877765554
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-08 Score=103.79 Aligned_cols=148 Identities=20% Similarity=0.328 Sum_probs=100.7
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc-cccccccCCCcceeee
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV-GEVSTKSGRGKHTTRH 225 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v-~~v~~~~~~~~~ttr~ 225 (391)
..+++|||++ .||+++|.|-+|-|-|-|+.+|+|+. +|.+|+|.++|.++ +..+.... ....
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr------------~~~~G~I~l~G~~v~~~~~~~~~----r~~G 335 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR------------KPASGRILLNGKDVLGRLSPRER----RRLG 335 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC------------ccCCceEEECCEeccccCCHHHH----HhcC
Confidence 6799999999 89999999999999999999999998 88889999999987 32222110 1234
Q ss_pred EEEEeccCC--C-----cccCC--------c-----ccc-hHHHHhCChhHHhhhc------hh-HHhhcCccccccccc
Q 016339 226 VSLLPLSGG--G-----YLADT--------P-----GFN-QPSLLKVTKQSLAQTF------PE-IKEMLKANEPAKCSF 277 (391)
Q Consensus 226 i~~v~~~~~--~-----~l~Dt--------p-----g~~-~~~l~~~~~~~l~~~~------p~-~~~~LSgGq~qr~~i 277 (391)
++++|-+.. + .+.++ + ++. ...+... ...+...| |. -...||||.+||+-+
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~-a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Il 414 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKF-ARELIEEFDVRAPSPDAPARSLSGGNQQKLIL 414 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHH-HHHHHHHcCccCCCCCcchhhcCCcceehhhh
Confidence 455554411 1 01111 1 111 1111111 01111111 11 124899999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
||=+ ..+|+++|.. |....+.+.+.|.+++.....
T Consensus 415 aREl-~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~A 455 (501)
T COG3845 415 AREL-ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKA 455 (501)
T ss_pred hhhh-ccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCE
Confidence 9999 8999999997 888999999988888776544
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.4e-09 Score=115.15 Aligned_cols=44 Identities=9% Similarity=0.155 Sum_probs=39.5
Q ss_pred hcCcccccccccccccccC---CCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLG---EPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~---eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+++ +. +|.++|+| |+.....++++|.++...
T Consensus 828 tLSgGe~QRl~LA~aL-~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~ 880 (924)
T TIGR00630 828 TLSGGEAQRIKLAKEL-SKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ 880 (924)
T ss_pred cCCHHHHHHHHHHHHH-hhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 8999999999999999 65 59999999 889999999999998654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.9e-09 Score=105.45 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=44.6
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCC-cceecCcccccc
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFEDQRVGEV 212 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G-~I~~~g~~v~~v 212 (391)
.+|++|++.+ +|++++|+|||||||||||+ +|+. .|++| +|.++|.++...
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~------------~~~sGg~I~ldg~~~~~~ 72 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR------------KFSEGYEFFLDATHSFSP 72 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC------------CCCCCCEEEECCEECCCC
Confidence 4789999999 89999999999999999999 6776 77777 799999887553
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-08 Score=92.90 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=33.1
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHH-HHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYF-QLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~-~ll~el~~ 309 (391)
.+|+||+|+..+++++ .+|+++++| |+.....+. .+++++.+
T Consensus 91 ~fs~g~~~~~~i~~~~--~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~ 139 (200)
T cd03280 91 TFSSHMKNIARILQHA--DPDSLVLLDELGSGTDPVEGAALAIAILEELLE 139 (200)
T ss_pred hHHHHHHHHHHHHHhC--CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 7899999999998775 689999999 677666664 56777654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-08 Score=109.46 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=40.3
Q ss_pred hcCcccccccccccccccCCC---cEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEP---GCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP---~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+++ +.+| .++|+| |+.....++++|.++.+.
T Consensus 830 tLSgGEkQRl~LAraL-~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~ 882 (943)
T PRK00349 830 TLSGGEAQRVKLAKEL-SKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK 882 (943)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 8999999999999999 8888 899999 888999999999998754
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-08 Score=88.39 Aligned_cols=44 Identities=14% Similarity=-0.028 Sum_probs=36.8
Q ss_pred hcCcccccccccccccccC----CCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLG----EPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~----eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.||+||+|++++++++ .. +|+++++| |+.....+.+.+.++..+
T Consensus 77 ~lS~G~~~~~~la~~L-~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~ 130 (162)
T cd03227 77 QLSGGEKELSALALIL-ALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK 130 (162)
T ss_pred eccccHHHHHHHHHHH-HhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 4999999999999999 54 78999999 788888888888776543
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-08 Score=99.59 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=71.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCc-ceecCccccccccccCCCcceeeeEEEEeccCCCcc
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS-KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~-I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l 237 (391)
.++++.+|.||.||||||++|+|.. +|++|. +-. ..++.-+++.......+ + .+.....+
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~------------~pd~~~e~p~--lnVSykpqkispK~~~t--v---R~ll~~kI 427 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRL------------KPDEGGEIPV--LNVSYKPQKISPKREGT--V---RQLLHTKI 427 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCC------------CCCccCcccc--cceeccccccCccccch--H---HHHHHHHh
Confidence 3689999999999999999999988 676653 211 11222222211000001 0 00000111
Q ss_pred ---cCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCHH
Q 016339 238 ---ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (391)
Q Consensus 238 ---~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~~ 295 (391)
.-.|.|....+..+.++.+.+.--. .|||||+||+++|.|+ -...++.+.|.|.
T Consensus 428 r~ay~~pqF~~dvmkpL~ie~i~dqevq---~lSggelQRval~KOG-GKpAdvYliDEps 484 (592)
T KOG0063|consen 428 RDAYMHPQFVNDVMKPLQIENIIDQEVQ---GLSGGELQRVALALCL-GKPADVYLIDEPS 484 (592)
T ss_pred HhhhcCHHHHHhhhhhhhHHHHHhHHhh---cCCchhhHHHHHHHhc-CCCCceEEecCch
Confidence 1235555555556666677666444 8999999999999999 7778999999554
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.4e-08 Score=92.70 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=38.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
..++|+||||||||||+++|+|.. .|.+|++.++|+++..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~------------~~~~G~i~~~g~~v~~~ 152 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL------------STGISQLGLRGKKVGIV 152 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc------------CCCCceEEECCEEeecc
Confidence 578999999999999999999999 99999999999988644
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.5e-08 Score=92.50 Aligned_cols=44 Identities=11% Similarity=-0.070 Sum_probs=36.7
Q ss_pred hcCcccccccccccccc-cC--CCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLH-LG--EPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh-~~--eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||+++|+++- .. .|+++++| |+.....+.+++.++..
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~ 222 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR 222 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC
Confidence 59999999999998651 22 99999999 78888899999988754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.6e-07 Score=87.71 Aligned_cols=147 Identities=29% Similarity=0.333 Sum_probs=87.4
Q ss_pred cccccceeEEEEEecCCCCCHH-HHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEE-EcCC--c-
Q 016339 73 PVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC-SVES--K- 147 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~-~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~-s~~~--~- 147 (391)
...++|.++-|-.+.-|...-. .+.+|+- .++-+||+||+||.++.+.......++.-++....+ +... .
T Consensus 43 ~l~~~D~iiEvrDaRiPLssrn~~~~~~~~-----~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~ 117 (335)
T KOG2485|consen 43 RLPLVDCIIEVRDARIPLSSRNELFQDFLP-----PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNK 117 (335)
T ss_pred hcccccEEEEeeccccCCccccHHHHHhcC-----CCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhh
Confidence 4569999999999988865543 4566652 789999999999999765555444444323322211 1111 1
Q ss_pred ---c---chHHHhhcc--------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 148 ---L---GLDSLLQRL--------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 148 ---~---~L~~ls~~i--------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
. .+..++..+ .+-.+.++|-+|+|||||||++...... . .....+.
T Consensus 118 ~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lr------------k--------~k~a~vG 177 (335)
T KOG2485|consen 118 QVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLR------------K--------KKAARVG 177 (335)
T ss_pred ccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhh------------h--------ccceecc
Confidence 0 111222222 1336889999999999999998876410 0 0112233
Q ss_pred cccCCCcceeeeEEEEec---cCCCcccCCcccchHHH
Q 016339 214 TKSGRGKHTTRHVSLLPL---SGGGYLADTPGFNQPSL 248 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~---~~~~~l~Dtpg~~~~~l 248 (391)
..+| .|+.++..+. ....+++||||+..+.+
T Consensus 178 ~~pG----VT~~V~~~iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 178 AEPG----VTRRVSERIRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred CCCC----ceeeehhheEeccCCceEEecCCCcCCCCC
Confidence 3333 5555544222 22356899999877643
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.1e-07 Score=99.98 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=96.9
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc---------ccC
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST---------KSG 217 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~---------~~~ 217 (391)
..+++++..+ +|+.+.++||+|||||||+++|+|..... .-..|+|.++|.+...... ..-
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~---------~~~~~~isy~G~~~~e~~~~~~~aY~~e~Dv 199 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNF---------LKSSGEITYNGHDLKEFVPKKTVAYNSEQDV 199 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCccc---------ccCCCceeECCCcccccccCceEEecccccc
Confidence 5789999999 89999999999999999999999987211 2235688999877644332 222
Q ss_pred CCcceeeeEEEEe-cc--CCCcccCCccc-------chHHHHhCChhHHhhhch--hHHhhcCcccccccccccccccCC
Q 016339 218 RGKHTTRHVSLLP-LS--GGGYLADTPGF-------NQPSLLKVTKQSLAQTFP--EIKEMLKANEPAKCSFNNCLHLGE 285 (391)
Q Consensus 218 ~~~~ttr~i~~v~-~~--~~~~l~Dtpg~-------~~~~l~~~~~~~l~~~~p--~~~~~LSgGq~qr~~iaralh~~e 285 (391)
..++.|..-.+-+ .. ..+..+|.-.. .+..+..+++..-++.+. ++.+-.|||||+|+.++-.+ +..
T Consensus 200 H~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~-v~~ 278 (1391)
T KOG0065|consen 200 HFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEML-VGP 278 (1391)
T ss_pred ccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeee-ecC
Confidence 2223331110000 00 00111121001 112223334433333321 23347899999999999999 999
Q ss_pred CcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 286 PGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 286 P~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+..+..| |....-++.+.++.+.+....
T Consensus 279 ~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~ 312 (1391)
T KOG0065|consen 279 ASILFWDEITRGLDSSTAFQIIKALRQLAHITGA 312 (1391)
T ss_pred cceeeeecccccccHHHHHHHHHHHHHHHhhhcc
Confidence 9999999 677777777777777654443
|
|
| >cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.4e-07 Score=68.85 Aligned_cols=49 Identities=31% Similarity=0.488 Sum_probs=40.4
Q ss_pred CcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeecccccccc
Q 016339 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILD 71 (391)
Q Consensus 21 ~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~ 71 (391)
+..+.|..++.+++....++|||||.++..+ ++.+.|+.++||+|.+.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~VGD~V~~~~~~--~~~~~I~~vl~R~s~l~R 68 (68)
T cd04466 20 GKIYECRLRGKFRKDKNPPAVGDRVEFEPED--DGEGVIEEILPRKNLLIR 68 (68)
T ss_pred CeEEEEEEccccccCCCCCCCCcEEEEEECC--CCcEEEEEEeccceEEEC
Confidence 5679999999887555679999999997533 566899999999998865
|
Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-07 Score=84.93 Aligned_cols=61 Identities=31% Similarity=0.459 Sum_probs=48.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCccc
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~ 238 (391)
+--++++|.|+||||||||+|.+.. .+..+|..|| .|+.+-++.......+.
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k------------------------~LArtSktPG----rTq~iNff~~~~~~~lV 75 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQK------------------------NLARTSKTPG----RTQLINFFEVDDELRLV 75 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCc------------------------ceeecCCCCC----ccceeEEEEecCcEEEE
Confidence 3458999999999999999999964 2456777777 78888888777667789
Q ss_pred CCcccchHH
Q 016339 239 DTPGFNQPS 247 (391)
Q Consensus 239 Dtpg~~~~~ 247 (391)
|.||+....
T Consensus 76 DlPGYGyAk 84 (200)
T COG0218 76 DLPGYGYAK 84 (200)
T ss_pred eCCCccccc
Confidence 999986543
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.8e-07 Score=85.51 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=34.4
Q ss_pred hhcCccccccccccccc--------ccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCL--------HLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 265 ~~LSgGq~qr~~iaral--------h~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
..+|+||+|++.+|+++ +..+|+++++| |+.....+++.+.++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~ 238 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR 238 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC
Confidence 36899999999999986 24799999999 667777777777553
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.24 E-value=4e-07 Score=84.47 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=34.3
Q ss_pred cCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+..+.+++++.. .|++++|.||||+||||++++|+++.
T Consensus 13 ~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 13 DKKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cCCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556788899988 67999999999999999999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-06 Score=79.98 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=37.9
Q ss_pred hHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 150 L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
.+-+.+.+ .|+.++|+||||||||||+++|+++. +|+.|.+.+++
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i------------~~~~~~i~ied 60 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI------------PPDERIITIED 60 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc------------CCCCCEEEECC
Confidence 34455555 79999999999999999999999998 78888888765
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.8e-07 Score=85.16 Aligned_cols=58 Identities=36% Similarity=0.527 Sum_probs=42.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEE--EEecc-CCCc
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS--LLPLS-GGGY 236 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~--~v~~~-~~~~ 236 (391)
.++||+|+++||||||+|.|.|.- ++.+|.++. |||+.. .+..+ ....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~K-------------------------isIvS~k~Q----TTR~~I~GI~t~~~~QiI 57 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQK-------------------------ISIVSPKPQ----TTRNRIRGIVTTDNAQII 57 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCc-------------------------eEeecCCcc----hhhhheeEEEEcCCceEE
Confidence 489999999999999999999975 567777766 665421 22222 2334
Q ss_pred ccCCcccchH
Q 016339 237 LADTPGFNQP 246 (391)
Q Consensus 237 l~Dtpg~~~~ 246 (391)
+.||||+..+
T Consensus 58 fvDTPGih~p 67 (298)
T COG1159 58 FVDTPGIHKP 67 (298)
T ss_pred EEeCCCCCCc
Confidence 7899999765
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.8e-07 Score=82.40 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.|++++|+||||+|||||+++|++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHH
Confidence 5789999999999999999999954
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.3e-06 Score=71.30 Aligned_cols=23 Identities=48% Similarity=0.700 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~ 23 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK 23 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST
T ss_pred CEEEECCCCCCHHHHHHHHhccc
Confidence 37999999999999999999853
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.4e-06 Score=86.10 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=42.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+-++++.+|..++..+.+-++.| .|..++||||||-||||||+.|+...
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra 314 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARA 314 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhh
Confidence 44577888888887888888888 89999999999999999999998753
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-06 Score=80.38 Aligned_cols=37 Identities=22% Similarity=0.091 Sum_probs=32.0
Q ss_pred cccccccccccccCCCcEEEec-----------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG-----------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD-----------D~~~~~~~~~ll~el~ 308 (391)
++++..+|+++ +.+|+++++| |+...+.+.+++.+++
T Consensus 157 ~~~f~~ia~~l-~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 157 EKPFLWLARRL-TNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHH-hhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 77778999999 9999999998 6778888888888865
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.8e-06 Score=76.85 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=32.7
Q ss_pred hcCccccccccccc--ccc-cCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 266 MLKANEPAKCSFNN--CLH-LGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 266 ~LSgGq~qr~~iar--alh-~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.|||||+-.+++|- |++ ....+++|+| |..+...+.++|.++....+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ 192 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQF 192 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999888762 232 3456677887 788999999999987644444
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.1e-06 Score=85.28 Aligned_cols=60 Identities=38% Similarity=0.482 Sum_probs=49.2
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc-
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY- 236 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~- 236 (391)
+|-.++|+|+++||||||||+|++.. .+.|+.-+| |||++.......+|+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d-------------------------~AIVTdI~G----TTRDviee~i~i~G~p 266 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRD-------------------------RAIVTDIAG----TTRDVIEEDINLNGIP 266 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCC-------------------------ceEecCCCC----CccceEEEEEEECCEE
Confidence 57899999999999999999999986 345666667 898887777766664
Q ss_pred --ccCCcccchH
Q 016339 237 --LADTPGFNQP 246 (391)
Q Consensus 237 --l~Dtpg~~~~ 246 (391)
+.||.|.++.
T Consensus 267 v~l~DTAGiRet 278 (454)
T COG0486 267 VRLVDTAGIRET 278 (454)
T ss_pred EEEEecCCcccC
Confidence 7899998853
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.9e-06 Score=62.95 Aligned_cols=28 Identities=39% Similarity=0.709 Sum_probs=24.2
Q ss_pred cccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 156 RLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 156 ~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
...|.++.|.||||||||||+.+|.-..
T Consensus 20 ~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 20 DPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3357799999999999999999988765
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.1e-06 Score=75.79 Aligned_cols=26 Identities=46% Similarity=0.699 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||++.|++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999999986
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.2e-06 Score=79.43 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=31.5
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
....+.+++++.. ++++++|.||||+|||||+++++-
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH
Confidence 3345678888888 789999999999999999999873
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.4e-06 Score=81.75 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=36.9
Q ss_pred CeeEEEEcC-CccchHHHhhcc-cCC-------EEEEEecCCCcHHHHHHHHhcCC
Q 016339 137 YEPLFCSVE-SKLGLDSLLQRL-RDQ-------TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 137 ~~~v~~s~~-~~~~L~~ls~~i-~Ge-------~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+.++|. ...++..+++.+ .|+ .++|+|.+|||||||+|.|.|..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 21 ALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred cccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 345555554 334678888888 677 89999999999999999999864
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.3e-05 Score=75.08 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=32.3
Q ss_pred CccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+.+++++....++++|.||||+||||++++|++..
T Consensus 17 ~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 17 EPFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred CceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 34567888888877999999999999999999998753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.7e-06 Score=83.85 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=33.0
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+++++ +.+ +|++++|+|+||+|||||+++|++..
T Consensus 144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34588888 777 99999999999999999999999876
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.7e-06 Score=78.17 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+|++|||||||+|.|.|..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~ 24 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK 24 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999865
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.9e-06 Score=73.98 Aligned_cols=25 Identities=44% Similarity=0.708 Sum_probs=23.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|++++|+||||||||||+++|++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999999986
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.1e-06 Score=76.77 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=30.5
Q ss_pred CccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+++++++.. |++++|+||||||||||+++|+|..
T Consensus 13 ~~~v~n~i~l~~-g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 13 EKRVANDIDMEK-KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CCeecceEEEcC-CcEEEEECCCCCChHHHHHHHHHHH
Confidence 345667766665 6999999999999999999999864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.2e-05 Score=73.26 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=27.4
Q ss_pred cccccccccccCCCcEEEec------CHH-HHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWE-RYQYYFQLLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~-~~~~~~~ll~el~~ 309 (391)
|+++++.++ +.+|.++++| |+. ....+..+++.+.+
T Consensus 97 ~~l~~~l~~-~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~ 139 (213)
T cd03281 97 YQVSKALRL-ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLK 139 (213)
T ss_pred HHHHHHHHh-CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 688888888 8999999999 543 45555677777754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.1e-06 Score=84.28 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=57.2
Q ss_pred eeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC---cccccc
Q 016339 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED---QRVGEV 212 (391)
Q Consensus 138 ~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g---~~v~~v 212 (391)
+.+...|.++ .+++.++ .+ +|++++|+||||||||||+++|+++. .|+.|.+.+.| .++...
T Consensus 143 ~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~------------~pd~gvv~liGergrev~e~ 209 (450)
T PRK06002 143 ARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD------------AFDTVVIALVGERGREVREF 209 (450)
T ss_pred ecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCeeeeeecccCCccHHHH
Confidence 4566667544 5777775 56 99999999999999999999999998 88889887754 444433
Q ss_pred ccccCCCcceeeeEEEEecc
Q 016339 213 STKSGRGKHTTRHVSLLPLS 232 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~ 232 (391)
.... +.....+.+.++++.
T Consensus 210 ~~~~-l~~~r~rtI~vV~qs 228 (450)
T PRK06002 210 LEDT-LADNLKKAVAVVATS 228 (450)
T ss_pred hHHH-HHHhhCCeEEEEEcC
Confidence 2211 111233567777775
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.3e-05 Score=88.19 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=38.4
Q ss_pred hcCcccccccccccccccC--CCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 266 MLKANEPAKCSFNNCLHLG--EPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~--eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.|||||.||+.+|.-|... .+.++|+| ++.-...++++|++|.....+
T Consensus 1699 tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~t 1754 (1809)
T PRK00635 1699 SLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHS 1754 (1809)
T ss_pred ccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCe
Confidence 7999999999999988332 36899999 567788888888888765444
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.7e-05 Score=75.90 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=22.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|++|||||||+|+|.|..
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4579999999999999999999975
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.4e-05 Score=81.95 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=39.6
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
.+++.+ +.+ +|+.++|+|+||+|||||+++|++.. +++.|.|.+.|++
T Consensus 145 raID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~------------~~~~gvI~~iGer 193 (432)
T PRK06793 145 KSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNA------------KADINVISLVGER 193 (432)
T ss_pred EEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccC------------CCCeEEEEeCCCC
Confidence 467764 666 99999999999999999999999998 7777776655544
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.7e-05 Score=80.63 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-++|||.++||||||||+|++..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k 183 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK 183 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc
Confidence 49999999999999999999854
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.4e-05 Score=71.13 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.++||||||+|+|+|..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~ 24 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK 24 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999986
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.4e-05 Score=73.21 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||+|.|+|..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~ 24 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE 24 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC
Confidence 58999999999999999999975
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.2e-05 Score=72.80 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=24.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|++++|+|+||||||||+++|+++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999987
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.8e-05 Score=82.67 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=52.3
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
..+...++...+++.+++.+ .|+.++|+||||+|||||++.|.|+. +|.+|++.++...+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gll------------pp~~g~e~le~~~i 248 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLL------------PDLSNEEALESAAI 248 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccC------------CCCCCcEEEecchh
Confidence 45666778888999999888 78999999999999999999999999 88999988776554
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.6e-05 Score=81.91 Aligned_cols=50 Identities=28% Similarity=0.316 Sum_probs=43.5
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
..+++++ +.+ +|++++|+|+||+|||||+++|++.. .|+.|.|.+.|++-
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~------------~~~~gvI~~~Gerg 196 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT------------SADLNVIALIGERG 196 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc------------CCCeEEEEEEecCC
Confidence 4578888 888 99999999999999999999999998 88889888865443
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=1e-05 Score=82.84 Aligned_cols=56 Identities=27% Similarity=0.262 Sum_probs=45.9
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCC---CcceecCcccccccc
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL---GSKWFEDQRVGEVST 214 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~---G~I~~~g~~v~~v~~ 214 (391)
+..+++++ +.+ +|++++|+|+||+|||||+++|++.. .++. |.|...+.++..+..
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~------------~~dv~v~g~Ig~rg~ev~e~~~ 197 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHS------------EADVFVIGLIGERGREVTEFVE 197 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCC------------CCCeEEEEEEeeCCccHHHHHH
Confidence 34688898 887 99999999999999999999999987 5554 777777777765443
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.2e-05 Score=76.26 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=22.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+|++|||||||+|.|.|..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~ 29 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQK 29 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999864
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.4e-05 Score=67.68 Aligned_cols=20 Identities=60% Similarity=0.757 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 016339 162 TVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~g 181 (391)
++|+|++|||||||+|.|.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999994
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=3e-05 Score=70.02 Aligned_cols=23 Identities=52% Similarity=0.651 Sum_probs=21.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl 182 (391)
-.++|+|++|||||||+|.|.+.
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 46999999999999999999985
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.9e-05 Score=80.76 Aligned_cols=59 Identities=39% Similarity=0.478 Sum_probs=47.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc-
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY- 236 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~- 236 (391)
.|-.++|+|++++|||||||+|+... +..|++.+| |||+..-...+.+|+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~d-------------------------rsIVSpv~G----TTRDaiea~v~~~G~~ 317 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSRED-------------------------RSIVSPVPG----TTRDAIEAQVTVNGVP 317 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCC-------------------------ceEeCCCCC----cchhhheeEeecCCeE
Confidence 57789999999999999999999876 457777777 887765555555554
Q ss_pred --ccCCcccch
Q 016339 237 --LADTPGFNQ 245 (391)
Q Consensus 237 --l~Dtpg~~~ 245 (391)
+.||+|+++
T Consensus 318 v~L~DTAGiRe 328 (531)
T KOG1191|consen 318 VRLSDTAGIRE 328 (531)
T ss_pred EEEEecccccc
Confidence 889999987
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00019 Score=77.48 Aligned_cols=39 Identities=31% Similarity=0.331 Sum_probs=32.1
Q ss_pred EEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHH
Q 016339 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINA 178 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~ 178 (391)
+.+.-.+...|+||+..| -|.+++|-|-||||||||||-
T Consensus 607 L~l~gA~~nNLkni~v~iPLg~~t~VTGVSGSGKSTLIn~ 646 (935)
T COG0178 607 LELKGARRNNLKNIDVEIPLGVFTCVTGVSGSGKSTLIND 646 (935)
T ss_pred EEEecccccCcccceeecccccEEEEEecCCCCHHHhHHH
Confidence 344444556799999999 699999999999999999954
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=97.75 E-value=4e-05 Score=65.89 Aligned_cols=25 Identities=52% Similarity=0.659 Sum_probs=22.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|..++++|++|||||||+|.|.+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~ 25 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRD 25 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCc
Confidence 5679999999999999999999865
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.1e-05 Score=69.76 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=29.3
Q ss_pred chHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+++++..+.-.++|+|++|||||||++.|.+..
T Consensus 9 ~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~ 43 (190)
T cd00879 9 VLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDR 43 (190)
T ss_pred HHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57777777755667999999999999999998754
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.7e-05 Score=68.43 Aligned_cols=25 Identities=48% Similarity=0.593 Sum_probs=22.1
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|++|||||||+|.|.+..
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~ 42 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRK 42 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999863
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.8e-05 Score=86.91 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=31.7
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHH-HHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYY-FQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~-~~ll~el~~ 309 (391)
.+|+++++...|.+++ .+|.++|+| |+.....+ ..+++.+..
T Consensus 385 tfS~~m~~~~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~ 433 (771)
T TIGR01069 385 TFSGHMKNISAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLLK 433 (771)
T ss_pred HHHHHHHHHHHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 6788888888887655 689999999 67666555 567777654
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.8e-05 Score=72.34 Aligned_cols=63 Identities=30% Similarity=0.346 Sum_probs=45.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCC---
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG--- 235 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~--- 235 (391)
.-++.|.|++++|||||++.|.+-.. . ...+++||+.+..-..+.+.
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Akp--------------------------E----vA~YPFTTK~i~vGhfe~~~~R~ 217 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKP--------------------------E----VAPYPFTTKGIHVGHFERGYLRI 217 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCC--------------------------c----cCCCCccccceeEeeeecCCceE
Confidence 46899999999999999999998751 1 23455688765554444333
Q ss_pred cccCCcccchHHHHhC
Q 016339 236 YLADTPGFNQPSLLKV 251 (391)
Q Consensus 236 ~l~Dtpg~~~~~l~~~ 251 (391)
.++||||..+..+...
T Consensus 218 QvIDTPGlLDRPl~Er 233 (346)
T COG1084 218 QVIDTPGLLDRPLEER 233 (346)
T ss_pred EEecCCcccCCChHHh
Confidence 3899999887665543
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.7e-05 Score=69.86 Aligned_cols=25 Identities=52% Similarity=0.729 Sum_probs=23.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|++++|+||||||||||++.|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6899999999999999999999976
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.6e-05 Score=68.04 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|+||||||||++.|.+..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~ 38 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASED 38 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCC
Confidence 3569999999999999999999974
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.68 E-value=1.9e-05 Score=73.03 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=24.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|+||||||||||++.|+++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999987
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.9e-06 Score=81.97 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=72.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcc-----------eecCccccccccccCCCcce-eee
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK-----------WFEDQRVGEVSTKSGRGKHT-TRH 225 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I-----------~~~g~~v~~v~~~~~~~~~t-tr~ 225 (391)
.|+..++||-||-||||-++.|+|.. +|.-|.- .|-|..+...+.+...+..- .-.
T Consensus 99 pg~vlglvgtngigkstAlkilagk~------------kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~k 166 (592)
T KOG0063|consen 99 PGQVLGLVGTNGIGKSTALKILAGKQ------------KPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIK 166 (592)
T ss_pred cchhccccccCcccHHHHHHHHhCCC------------CCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCC
Confidence 69999999999999999999999998 4443321 12222222111111000000 000
Q ss_pred EEEEecc---CCCc------ccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCHHH
Q 016339 226 VSLLPLS---GGGY------LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWER 296 (391)
Q Consensus 226 i~~v~~~---~~~~------l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~~~ 296 (391)
.+++.+- ..+. ..+........+..+.+..+.++-.+ .||||+-||.+||.+. +...++.++|.+..
T Consensus 167 pQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~---~lsggelqrfaia~~~-vq~advyMFDEpSs 242 (592)
T KOG0063|consen 167 PQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVE---QLSGGELQRFAIAMVC-VQKADVYMFDEPSS 242 (592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhh---hcccchhhhhhhhhhh-hhhcceeEecCCcc
Confidence 0000000 0000 00111111222334445555555445 9999999999999999 99999999997776
Q ss_pred HHHHHHHH
Q 016339 297 YQYYFQLL 304 (391)
Q Consensus 297 ~~~~~~ll 304 (391)
|-.+.+-|
T Consensus 243 YLDVKQRL 250 (592)
T KOG0063|consen 243 YLDVKQRL 250 (592)
T ss_pred cchHHHhh
Confidence 65554433
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.5e-05 Score=70.70 Aligned_cols=23 Identities=52% Similarity=0.739 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+||||||||+|+|+|..
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~ 25 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVG 25 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47999999999999999999987
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=2.7e-05 Score=73.26 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=29.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I 202 (391)
+..+++|.||||||||||++.|++.. .+..|.+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l------------~~~~g~~ 64 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALL------------QQDGELP 64 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh------------hhccCCc
Confidence 45799999999999999999999998 7777773
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=2.3e-05 Score=80.44 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=33.7
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+++++ +.+ +|++++|+|+||||||||+++|+|..
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 4689999 888 89999999999999999999999987
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.6e-05 Score=75.06 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=35.1
Q ss_pred HHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec
Q 016339 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (391)
Q Consensus 151 ~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~ 205 (391)
+-+++.+ .|+.++|+||+|||||||+++|++.. ++..|.+.++
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~------------~~~~~iv~ie 178 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEI------------PKDERIITIE 178 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccC------------CccccEEEEc
Confidence 3455666 78999999999999999999999998 6666666553
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.8e-05 Score=66.80 Aligned_cols=52 Identities=27% Similarity=0.317 Sum_probs=0.0
Q ss_pred EEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc----c
Q 016339 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY----L 237 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~----l 237 (391)
++|+|++|||||||+|.|.+.. ..++..++ +|..........++. +
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~--------------------------~~v~~~~~----~t~~~~~~~~~~~~~~~~~l 52 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAK--------------------------PKIADYPF----TTLVPNLGVVRVDDGRSFVV 52 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCC--------------------------ccccCCCc----cccCCcceEEEcCCCCeEEE
Q ss_pred cCCccc
Q 016339 238 ADTPGF 243 (391)
Q Consensus 238 ~Dtpg~ 243 (391)
.||||+
T Consensus 53 ~DtpG~ 58 (170)
T cd01898 53 ADIPGL 58 (170)
T ss_pred EecCcc
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.4e-05 Score=69.37 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=23.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|++++|+||||||||||++.|++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999876
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=97.61 E-value=2.1e-05 Score=71.54 Aligned_cols=19 Identities=32% Similarity=0.572 Sum_probs=18.0
Q ss_pred EEEEecCCCcHHHHHHHHh
Q 016339 162 TVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~ 180 (391)
++|.||||+||||+++.+.
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.2e-05 Score=71.99 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=25.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+.++|+||+|||||||++.|.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 89999999999999999999999877
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.59 E-value=3.6e-05 Score=75.20 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=22.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++||.||||||||||+++|.++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0001 Score=63.52 Aligned_cols=54 Identities=39% Similarity=0.463 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc---c
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY---L 237 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l 237 (391)
.++++|++|||||||+|.|+|.. +........ +++............ +
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~~-------------------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~l 55 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQK-------------------------ISIVSPKPQ----TTRNRIRGIYTDDDAQIIF 55 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-------------------------eEeccCCCC----ceeceEEEEEEcCCeEEEE
Q ss_pred cCCccc
Q 016339 238 ADTPGF 243 (391)
Q Consensus 238 ~Dtpg~ 243 (391)
.|+||.
T Consensus 56 iDtpG~ 61 (168)
T cd04163 56 VDTPGI 61 (168)
T ss_pred EECCCC
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=97.59 E-value=4.3e-05 Score=75.78 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=39.4
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
..+++.+ +.+ +|++++|+|+||+|||||+++|++.. .|+.|.+..-|
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~------------~~~~~vi~~iG 104 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGT------------TADVNVIALIG 104 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCC------------CCCEEEEEEEe
Confidence 4578888 777 89999999999999999999999998 67666655433
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.6e-05 Score=69.87 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.|+|++||||||++|.|+|..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~ 24 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKE 24 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999986
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=97.57 E-value=7.4e-05 Score=65.41 Aligned_cols=44 Identities=32% Similarity=0.514 Sum_probs=0.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~D 239 (391)
+.+.||||+|||||||+++|.|.. .-.. .|..+.+ ....+|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~---------------------------~~~~-------KTq~i~~-----~~~~ID 42 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE---------------------------IRYK-------KTQAIEY-----YDNTID 42 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC---------------------------CCcC-------ccceeEe-----cccEEE
Q ss_pred Ccc
Q 016339 240 TPG 242 (391)
Q Consensus 240 tpg 242 (391)
|||
T Consensus 43 TPG 45 (143)
T PF10662_consen 43 TPG 45 (143)
T ss_pred CCh
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=5e-05 Score=78.10 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=42.6
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
+..+++++ +.+ +|++++|+|+||+|||||+++|++.. .++.|.+.+.|.+
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~------------~~d~~vi~~iGer 200 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGT------------QCDVNVIALIGER 200 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCeEEEEEEccC
Confidence 34678888 777 99999999999999999999999998 7777877766644
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=97.57 E-value=4.7e-05 Score=75.76 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=31.3
Q ss_pred cchHHHhhcc----cCCE-----EEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSLLQRL----RDQT-----TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~ls~~i----~Ge~-----vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++.+++.+ +|+. ++|+|+||||||||++.|.++.
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 4678888886 4655 9999999999999999999988
|
|
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=97.55 E-value=4.4e-05 Score=65.43 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 016339 162 TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++|+|++|||||||+|.|.+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~ 23 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ 23 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC
Confidence 6899999999999999999874
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 391 | ||||
| 1t9h_A | 307 | The Crystal Structure Of Yloq, A Circularly Permute | 6e-42 | ||
| 1u0l_A | 301 | Crystal Structure Of Yjeq From Thermotoga Maritima | 4e-32 | ||
| 2yv5_A | 302 | Crystal Structure Of Yjeq From Aquifex Aeolicus Len | 1e-25 | ||
| 2rcn_A | 358 | Crystal Structure Of The Ribosomal Interacting Gtpa | 2e-24 | ||
| 2ykr_W | 350 | 30s Ribosomal Subunit With Rsga Bound In The Presen | 8e-24 | ||
| 4a2i_V | 277 | Cryo-Electron Microscopy Structure Of The 30s Subun | 2e-17 |
| >pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted Gtpase Length = 307 | Back alignment and structure |
|
| >pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima Length = 301 | Back alignment and structure |
|
| >pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus Length = 302 | Back alignment and structure |
|
| >pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq From The Enterobacterial Species Salmonella Typhimurium Length = 358 | Back alignment and structure |
|
| >pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of Gmppnp Length = 350 | Back alignment and structure |
|
| >pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In Complex With The Yjeq Biogenesis Factor Length = 277 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301 | Back alignment and structure |
|---|
Score = 303 bits (778), Expect = e-102
Identities = 90/304 (29%), Positives = 145/304 (47%), Gaps = 40/304 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
++TG +LC +R + ++ VGD+V + G+IENV R + P VANV
Sbjct: 28 EETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVANV 85
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT--W 135
D ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L +
Sbjct: 86 DQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSG 145
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 146 LYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI--NPGL---------- 193
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
RV EVS K RG+HTT LL GGY+ DTPGF + + +
Sbjct: 194 ----------KLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
L F E +C F++C H+ EP C VK E RY+ Y ++ E+
Sbjct: 244 LKHYFKEFG-------DKQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYELL 296
Query: 309 IREE 312
R +
Sbjct: 297 GRRK 300
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = e-101
Identities = 101/309 (32%), Positives = 153/309 (49%), Gaps = 41/309 (13%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++ + + C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+
Sbjct: 27 DESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPI 84
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS 130
NVD +L+FS QP L RFLV E+ I + + K++L++++ + +
Sbjct: 85 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAE 144
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY+ S + + L ++ +D+TTV G SGVGKSSL+NA+ SP
Sbjct: 145 DYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI--SPEL----- 197
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
R E+S GRGKHTTRHV L+ GG +ADTPGF+
Sbjct: 198 ---------------GLRTNEISEHLGRGKHTTRHVELIHT-SGGLVADTPGFSSLEFTD 241
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ ++ L TFP+I+E C F CLHL EP C VK E RY +Y +
Sbjct: 242 IEEEELGYTFPDIREKSS-----SCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEF 296
Query: 304 LDEIRIREE 312
+ EI+ R+
Sbjct: 297 MTEIKDRKP 305
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Length = 302 | Back alignment and structure |
|---|
Score = 290 bits (744), Expect = 7e-97
Identities = 82/299 (27%), Positives = 133/299 (44%), Gaps = 44/299 (14%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
G + R + K K ++ GD V +D IE V +R ++ P VANVD
Sbjct: 26 DGKTYRGIPRGKVLK-KTKIYAGDYVWGEVVD--PNTFAIEEVEERKNLLIRPKVANVDR 82
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH---TWG 136
++++ ++ P+ + L LV E + + NK++L++EE + + G
Sbjct: 83 VIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ L S ++ G+D L+ L ++ GPSGVGKSS+++ L
Sbjct: 143 YDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSRLTG--------------- 187
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQS 255
E+ R EVS K+ RG+HTT V L+P G ++ DTPGF++ V +
Sbjct: 188 --------EELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPRE 239
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
+ F E +C + +C H EPGC VK ERY+ Y +++
Sbjct: 240 VRNYFREFL-------RYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVY 291
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Length = 358 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 7e-82
Identities = 78/313 (24%), Positives = 148/313 (47%), Gaps = 52/313 (16%)
Query: 27 VVRALLKKIKRRVLVGDKVVV----GSIDWVDRRGMIENVFQRSTEI--------LDPPV 74
V R +++ R ++ GD+VV + + V+ +G++E V +R++ + + P
Sbjct: 69 VHRCNIRRTIRSLVTGDRVVWRPGKAAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIA 128
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++++ ++ P+L + R+LV E+ + + LNK++L+D+E ++ ++
Sbjct: 129 ANIDQIVIVSAI-LPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDI 187
Query: 135 W---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
+ GY L S ++ GL L + L + ++ G SGVGKSSL+NAL ++
Sbjct: 188 YRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNAL--LGLQNEI--- 242
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
+VS SG G+HTT L GG + D+PG + L +
Sbjct: 243 ----------------LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHL 286
Query: 252 TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLL 304
+ + Q F E + L C + +C H +PGC ++ R++ Y ++L
Sbjct: 287 EPEQITQGFVEFHDYL-----GHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRIL 341
Query: 305 DEI---RIREEFQ 314
+ + + R+ F
Sbjct: 342 ESMAQVKTRKNFS 354
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 2e-10
Identities = 40/172 (23%), Positives = 57/172 (33%), Gaps = 39/172 (22%)
Query: 109 PLTLALNKVELVDEEVLNTW-----KSRLHTWGYEP---LFCSVESKLGLDSLLQRLRDQ 160
+ L NK +L+ + V + + G +P S G+ L +
Sbjct: 98 KVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157
Query: 161 ----TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
+VG + VGKS+ IN + + E + V S
Sbjct: 158 RGGKDVYVVGCTNVGKSTFINRM-------------------IKEFSDETENVITTSHFP 198
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTFP--EIK 264
G TT + +PL L DTPG V KQSL P EIK
Sbjct: 199 G----TTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIK 246
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 7e-10
Identities = 52/353 (14%), Positives = 103/353 (29%), Gaps = 78/353 (22%)
Query: 33 KKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRST--EILDPPVANVDHLLLLFSM--DQ 88
K I + V + V + D D + M +++ + I+ V L LF +
Sbjct: 19 KDI---LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTLRLFWTLLSK 74
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWG--YEPLF- 141
+ + +F+ E ++ K E + + RL+ +
Sbjct: 75 QEE---MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 142 CSVESKLGLDSLLQRLRDQTTVIV-GPSGVGKSSL-INALRSSPHASDAADVDNWFE-PI 198
++ L L L LR V++ G G GK+ + ++ S V + I
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-------KVQCKMDFKI 184
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
W + ++ L L Y D ++ K +
Sbjct: 185 F---WL---NLKNCNSPETV---------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIRE-----EF 313
E++ +LK+ + NCL +V L ++ +
Sbjct: 230 IQAELRRLLKSK-----PYENCL-------LV-------------LLNVQNAKAWNAFNL 264
Query: 314 QLRTFGTKREGDV-----RYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD 361
+ T R V + + L P + + K ++ D
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-05
Identities = 60/396 (15%), Positives = 113/396 (28%), Gaps = 118/396 (29%)
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAES-TGIPL-------- 110
+ ++ NV +L+P+ L + L+E + +
Sbjct: 117 DRLYNDNQVFAK--YNV-----------SRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 111 -TLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLG-LDSLLQRLR------- 158
+AL+ +V ++ W S E+ L L LL ++
Sbjct: 164 TWVALDVCL--SYKVQCKMDFKIF-WLNLKNC---NSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN-WFEPILGSKWFEDQ-------RVG 210
D ++ I ++ L L+S P+ + + N F R
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKILLTTRFK 275
Query: 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKAN 270
+V+ TT H+SL S + LLK Q P E+L N
Sbjct: 276 QVTDFLSAA--TTTHISLDHHSMTLTPDEVKSL----LLKYLDCR-PQDLPR--EVLTTN 326
Query: 271 EPAKCSFNNCLHLGEPGCVVKGD---WERYQYY------------FQLLDEIRIREEFQ- 314
P L ++ W+ +++ +L+ R+ F
Sbjct: 327 -P--------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 315 LRTFGTKREG-DVRYKV-----GDMGVQQAEPRLEP-------KKHRRQSRKRINQSILD 361
L F + + D+ + +K ++S I L+
Sbjct: 378 LSVF---PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 362 ELDELDDD-----------------DNDDEIDLEND 380
+L+++ D+DD I D
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 3e-05
Identities = 62/388 (15%), Positives = 114/388 (29%), Gaps = 93/388 (23%)
Query: 7 QSEPSRTSDCNDKTGVELLCVVRALL--KKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQ 64
+ R + +R LL K + +LV V + + N F
Sbjct: 221 SNIKLRIHSIQAE--------LRRLLKSKPYENCLLVLLNV------Q-NAK--AWNAFN 263
Query: 65 RSTEIL----DPPVAN-----------VDHLLLLFSMDQPKLEPFALTRFL--------V 101
S +IL V + +DH + + D+ ++L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLL--KYLDCRPQDLPR 320
Query: 102 EAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL-GLDSLLQRLRDQ 160
E T P L++ + D L TW + H + L +ES L L+ R
Sbjct: 321 EV-LTTNPRRLSIIAESIRDG--LATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 161 TTVIVGPSGVG-KSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRVG----EVST 214
+ P + L++ + SD V N L K ++ + +
Sbjct: 377 RLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 215 KSGRGKHTTRHVSLL---------------PLSGGGYLADTPGFNQPSLLKVTKQS-LAQ 258
K H S++ P Y G + LK +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH----LKNIEHPERMT 491
Query: 259 TFPE-------IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIRE 311
F +++ ++ + A + + L+ + Y+ Y D R
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-------LQQLKFYKPYICDNDPKYERL 544
Query: 312 EFQLRTFGTKREGD-VRYKVGDMGVQQA 338
+ F K E + + K D+ ++ A
Sbjct: 545 VNAILDFLPKIEENLICSKYTDL-LRIA 571
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 30/161 (18%), Positives = 49/161 (30%), Gaps = 47/161 (29%)
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
++E P + LNK + D V WK G L + + GL+ ++ ++
Sbjct: 43 MIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKE 102
Query: 160 Q------------------TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
+I+G VGKS+LIN L
Sbjct: 103 ILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK------------------- 143
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
+ + + G T + + L DTPG
Sbjct: 144 ------NIAKTGDRPG----ITTSQQWVKVGKELELLDTPG 174
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 5e-09
Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 34/143 (23%)
Query: 109 PLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRL---RDQTTVIV 165
+ LNKV++ DE+ W G + LL++L R +IV
Sbjct: 48 ETIILLNKVDIADEKTTKKWVEFFKKQGKRVITTH--KGEPRKVLLKKLSFDRLARVLIV 105
Query: 166 GPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225
G GKS++IN L+ +R V + G T+
Sbjct: 106 GVPNTGKSTIINKLKG-------------------------KRASSVGAQPG----ITKG 136
Query: 226 VSLLPLSGGGYLADTPGFNQPSL 248
+ L G + DTPG ++
Sbjct: 137 IQWFSLENGVKILDTPGILYKNI 159
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 2e-08
Identities = 38/172 (22%), Positives = 56/172 (32%), Gaps = 40/172 (23%)
Query: 109 PLTLALNKVELVDEEV----LNTW-KSRLHTWGYEPL---FCSVESKLGLDSLLQRL--- 157
P+ L NK +L+ V L W + G P+ S +G+ +++ +
Sbjct: 100 PILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159
Query: 158 -RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
+VG + VGKS+ IN + V S
Sbjct: 160 REGGDVYVVGCTNVGKSTFINRIIEEATGKG--------------------NVITTSYFP 199
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTFP--EIK 264
G TT + +PL G L DTPG V + L P EI
Sbjct: 200 G----TTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIH 247
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 7/114 (6%)
Query: 53 VDRRGMIENVFQRSTEILDPPVANVDHL--LLLFSMDQPKLEPFALTRFLVEAES----- 105
+D G+++ EI + + +L L+++ D + F L + E
Sbjct: 219 IDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF 278
Query: 106 TGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+P + +NK+++ DEE + + + G P+ S G+D + + +
Sbjct: 279 KDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIK 332
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 18/102 (17%), Positives = 27/102 (26%), Gaps = 29/102 (28%)
Query: 150 LDSLLQRLRDQTT--VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
+ L+ + + G +G GKSS IN LR +
Sbjct: 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE--------------------- 96
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGG--YLADTPGFNQPS 247
E + K+G T D PG +
Sbjct: 97 ---EGAAKTGVV-EVTMERHPYKHPNIPNVVFWDLPGIGSTN 134
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 5e-04
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 37/107 (34%)
Query: 150 LDSLLQRLRDQ-----TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
L +L+ + T +++G GVGKSS +N+ ++G +
Sbjct: 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNS-------------------LIGEQVV 62
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSL 248
VS ++ + GG+ + DTPG +
Sbjct: 63 ------RVSPFQA----EGLRPVMVSRTMGGFTINIIDTPGLVEAGY 99
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 391 | |||
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 100.0 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 100.0 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 100.0 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.97 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.93 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.93 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.92 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.92 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.92 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.92 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.92 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.92 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.92 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.92 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.91 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.91 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.91 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.91 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.91 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.91 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.91 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.91 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.9 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.9 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.9 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.9 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.89 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.89 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.89 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.89 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.89 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.89 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.88 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.88 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.87 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.87 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.86 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.86 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.85 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.85 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.85 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.84 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.84 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.84 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.84 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.83 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.81 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.81 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.81 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.79 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.78 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.78 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.77 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.75 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.75 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.75 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.7 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.7 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.69 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.69 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 99.66 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.66 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.64 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.59 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.55 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.49 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.49 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.49 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.48 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.47 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.46 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.44 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.42 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.42 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.41 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.41 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.4 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.36 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.3 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.3 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.28 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.24 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.23 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.22 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.22 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.22 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.21 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.2 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.2 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.18 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.16 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.15 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.13 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.12 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.11 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.08 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.07 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.05 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.0 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.97 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 98.94 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.93 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.92 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.9 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 98.87 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.85 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.77 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.76 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.73 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.73 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.71 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.7 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 98.7 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 98.69 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.63 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 98.63 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.62 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.59 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.59 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.56 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.56 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.54 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.53 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.52 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.52 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.45 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.45 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.44 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.42 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.41 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.41 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.4 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.4 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.39 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.38 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.36 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.36 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.35 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.35 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.33 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.33 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.31 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.31 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.3 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.3 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 98.21 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.2 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.2 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.2 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.18 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.16 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 98.15 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.13 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.13 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 98.1 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.1 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 98.07 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.06 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.05 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.04 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.03 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 98.02 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.0 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.99 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.98 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.97 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.91 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.89 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.86 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.85 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.83 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.82 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.81 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.8 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.76 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.74 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 97.71 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.69 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.69 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.68 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.66 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.65 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.65 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 97.65 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 97.64 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.64 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 97.63 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.62 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 97.61 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.61 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.61 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 97.61 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 97.6 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 97.59 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.57 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 97.56 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 97.56 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.55 | |
| 1ah9_A | 71 | IF1, initiation factor 1; ribosome binding, protei | 97.53 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.52 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.5 | |
| 3i4o_A | 79 | Translation initiation factor IF-1; cytoplasm, pro | 97.48 | |
| 2oqk_A | 117 | Putative translation initiation factor EIF-1A; mal | 97.48 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.45 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.44 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 97.44 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 97.42 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.42 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.41 | |
| 1hr0_W | 71 | Translation initiation factor; ribosomal subunit, | 97.41 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.4 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 97.4 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 97.38 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 97.38 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.37 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.36 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 97.36 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 97.35 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.35 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 97.33 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 97.31 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.31 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 97.3 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 97.29 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 97.28 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.28 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 97.28 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 97.28 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 97.27 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 97.27 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 97.27 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 97.25 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.25 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.24 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.21 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.21 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.2 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 97.18 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.17 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.17 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.16 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 97.15 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.15 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.14 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.14 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.11 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 97.1 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 97.07 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 97.03 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 97.03 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.02 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.01 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 96.99 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.99 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.99 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.98 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.98 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.98 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.97 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.95 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.95 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.95 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.92 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.91 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 96.91 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.9 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 96.88 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.87 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.87 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.87 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.86 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.86 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 96.86 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.86 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.85 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.84 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.84 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.83 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.83 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 96.81 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.81 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.79 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.79 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.79 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.78 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 96.78 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.78 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.78 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 96.78 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.78 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.77 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.77 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.77 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.77 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.77 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.77 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.76 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 96.75 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.75 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.75 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.75 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.74 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.74 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.73 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.73 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.73 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 96.72 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.72 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 96.71 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.71 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.71 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.71 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.71 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.7 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.7 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.69 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.68 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.68 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.68 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 96.68 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.68 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.67 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.67 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.67 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.67 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.66 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 96.65 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.65 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.64 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.63 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.63 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.63 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.62 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.62 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.62 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.62 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.62 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.61 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.61 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.61 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.61 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.61 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.6 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.6 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 96.59 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.59 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.59 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.58 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 96.58 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.58 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 96.58 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.58 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.58 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 96.57 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 96.57 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 96.57 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.57 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.57 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.56 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.56 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.56 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.56 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.56 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.55 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.55 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.54 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.53 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.52 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.52 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.52 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 96.52 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 96.52 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.52 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.51 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.51 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.51 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.5 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.5 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.5 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.5 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.49 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.49 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 96.49 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.49 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.48 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.48 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 96.48 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.48 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.48 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 96.47 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 96.47 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 96.47 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.46 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 96.46 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.46 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 96.46 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 96.46 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.46 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.45 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 96.44 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.44 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.44 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.43 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.43 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.42 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.41 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.4 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 96.4 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 96.4 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.39 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 96.39 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 96.39 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.39 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.39 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.39 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.39 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.38 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.38 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.38 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.38 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 96.38 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.37 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.37 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.37 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.36 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.36 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.35 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 96.35 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 96.34 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 96.34 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.33 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 96.33 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 96.33 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.32 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 96.32 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 96.31 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.31 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 96.31 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 96.31 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.31 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 96.3 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 96.29 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 96.29 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 96.29 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 96.28 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.28 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.28 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.28 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 96.28 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 96.27 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 96.27 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.26 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 96.25 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 96.25 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 96.25 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 96.24 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.24 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 96.24 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.23 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.22 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 96.22 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.22 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.19 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.19 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 96.18 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.17 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 96.17 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.16 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.16 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.15 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.14 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.14 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.14 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.14 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 96.13 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.13 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.12 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.12 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 96.11 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.11 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.11 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.11 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.11 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 96.1 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.1 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 96.07 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.07 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 96.07 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.06 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 96.06 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.05 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 96.05 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 96.04 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.04 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 96.03 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 96.02 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.02 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 96.0 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.97 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.97 |
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=345.07 Aligned_cols=259 Identities=36% Similarity=0.635 Sum_probs=202.5
Q ss_pred CcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccccccccccccccceeEEEEEecCCCCCHHHHHHHH
Q 016339 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100 (391)
Q Consensus 21 ~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L 100 (391)
+..+.|..||++++.+..++|||||.++..+ ++.|.|++|+||+|.+.||++||+|++++|+++..|.++...|+|||
T Consensus 33 ~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L 110 (307)
T 1t9h_A 33 DKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFL 110 (307)
T ss_dssp CEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECCCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHH
T ss_pred CcEEEEEEcccccccCCCCCCCeEEEEEEcC--CCceEEEEEcchhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 5689999999999888899999999998643 45799999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEeCCCCCCHHH----HHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHH
Q 016339 101 VEAESTGIPLTLALNKVELVDEEV----LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLI 176 (391)
Q Consensus 101 ~~a~~~~~~~~lvlnK~Dl~~~~~----~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLL 176 (391)
+.|+..+++++||+||+||.++.+ .+.|.+.|.++||+++.+|..++.+++.|.-..+|++++|+|||||||||||
T Consensus 111 ~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~G~~~~lvG~sG~GKSTLl 190 (307)
T 1t9h_A 111 VLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLL 190 (307)
T ss_dssp HHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHH
T ss_pred HHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 999999999999999999998754 6788888989999999998877777776655559999999999999999999
Q ss_pred HHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHH
Q 016339 177 NALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256 (391)
Q Consensus 177 n~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l 256 (391)
|+|+|.. .|..|+|.+ ..+.|+|+|+...++... .+++.|+||+....+..+..+.+
T Consensus 191 n~L~g~~------------~~~~G~I~~----------~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~~~l~~lt~e~l 247 (307)
T 1t9h_A 191 NAISPEL------------GLRTNEISE----------HLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEEL 247 (307)
T ss_dssp HHHCC-----------------------------------------CCCCCEEEET-TEEEESSCSCSSCCCTTCCHHHH
T ss_pred HHhcccc------------cccccceee----------ecCCCcccccHHHHhhcC-CEEEecCCCccccccccCCHHHH
Confidence 9999998 778888765 112333444333333333 56789999988765544555667
Q ss_pred hhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHHH
Q 016339 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 257 ~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~~ 309 (391)
...||++.... ..|.|..|.|..+|+|.+.+ +..++..|..++.++++
T Consensus 248 ~~~f~~~~~~~-----~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 248 GYTFPDIREKS-----SSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKD 302 (307)
T ss_dssp GGGSHHHHHHG-----GGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-----hhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 67788755432 47999999999999999865 45688889888887653
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=334.67 Aligned_cols=255 Identities=28% Similarity=0.535 Sum_probs=196.3
Q ss_pred CCcEEEEEecccccccCCCceeCcEEEEceec-ccCc---eeEEEEeecccccccccc--------ccccceeEEEEEec
Q 016339 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSID-WVDR---RGMIENVFQRSTEILDPP--------VANVDHLLLLFSMD 87 (391)
Q Consensus 20 ~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~-~~~~---~~~i~~v~~R~~~~~~~~--------~anvD~~liv~s~~ 87 (391)
+|..+.|..|+.++ .++|||||.++..+ +..+ +|.|+.|+||+|.+.||. +||+|++++|++.
T Consensus 66 ~g~~~~~~~r~~~~----~~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R~~~l~R~~~~~~~~~i~anvD~v~iv~a~- 140 (358)
T 2rcn_A 66 DGEVHRCNIRRTIR----SLVTGDRVVWRPGKAAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIAANIDQIVIVSAI- 140 (358)
T ss_dssp TSCEEEEEECTTCC----CCCBTCEEEEECBC-------CCEEEEEECCCSCEEEEC-----CEEEEECCCEEEEEEES-
T ss_pred CCcEEEEEecCCCC----CCCCCcEEEEEeCCCccccccccceEeEEeCCcCcccCcchhhHHHHHHhcCCEEEEEEeC-
Confidence 45678999999886 38999999998543 1111 289999999999999863 8999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHH---HHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEE
Q 016339 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVI 164 (391)
Q Consensus 88 ~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~---~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaL 164 (391)
.|.+++..|+|||+.|+..+++++||+||+||+++++ .+.|...|+++||+++.+|..++.++++|++.++|++++|
T Consensus 141 ~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~~G~~~~l 220 (358)
T 2rcn_A 141 LPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIF 220 (358)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhcCCCEEEE
Confidence 5999999999999999999999999999999998865 6679899999999999999999999999999999999999
Q ss_pred EecCCCcHHHHHHHHhcCCCCCCcccccCccC-CCCCcceec-CccccccccccCCCcceee--eEEEEeccCCCcccCC
Q 016339 165 VGPSGVGKSSLINALRSSPHASDAADVDNWFE-PILGSKWFE-DQRVGEVSTKSGRGKHTTR--HVSLLPLSGGGYLADT 240 (391)
Q Consensus 165 vGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~-p~~G~I~~~-g~~v~~v~~~~~~~~~ttr--~i~~v~~~~~~~l~Dt 240 (391)
+||||||||||||+|+|.. . |.+|.|.+. |. +.|+|+ .+.++++ +..+.|+
T Consensus 221 vG~sG~GKSTLln~L~g~~------------~~~~~G~I~~~~G~-----------g~~tt~~~~i~~v~q--~~~l~dt 275 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQ------------NEILTNDVSNVSGL-----------GQHTTTAARLYHFPH--GGDVIDS 275 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCS------------SCCCCC------------------------CCCEEEECTT--SCEEEEC
T ss_pred ECCCCccHHHHHHHHhccc------------cccccCCccccCCC-----------CccceEEEEEEEECC--CCEecCc
Confidence 9999999999999999998 7 888888764 32 223433 3444443 4568899
Q ss_pred cccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHHH
Q 016339 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 241 pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~~ 309 (391)
|++.+..+..+...++...++++...+ ..|.|+.|.|...|+|.+.. ++.+|+.|.++++++..
T Consensus 276 pgv~e~~l~~l~~~e~~~~~~e~l~~~-----gl~~f~~~~~~~lSG~~~r~ala~gli~~~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 276 PGVREFGLWHLEPEQITQGFVEFHDYL-----GHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILESMAQ 346 (358)
T ss_dssp HHHHTCCCCCCCHHHHHHTSGGGGGGT-----TCSSSTTCCSSSCTTCHHHHHHHHTSSCHHHHHHHHHHHHHHC-
T ss_pred ccHHHhhhcCCCHHHHHHHHHHHHHHc-----CCchhcCCCcccCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 887665444344445556666655443 25667777777777766543 67999999999998754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=299.32 Aligned_cols=254 Identities=31% Similarity=0.543 Sum_probs=201.1
Q ss_pred CCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccccccccccccccceeEEEEEecCCCCCHHHHHHH
Q 016339 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99 (391)
Q Consensus 20 ~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~ 99 (391)
++..+.|..|+.+++.+. ++|||||.++.. .++.|.|+++.+|.+.+.|+.++|+|++++|+++..|.+++..+++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~--~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~ 102 (302)
T 2yv5_A 26 DGKTYRGIPRGKVLKKTK-IYAGDYVWGEVV--DPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNM 102 (302)
T ss_dssp TCCEEEEEECSSSTTSSC-CCBTCEEEEEEE--ETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHH
T ss_pred CCEEEEEEEcCCcccCCC-CcCceEEEEEEc--cCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHH
Confidence 356789999999987666 999999999853 35689999999999999999999999999999999998999999999
Q ss_pred HHHHHhCCCCEEEEEeCCCCCCHHH---HHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHH
Q 016339 100 LVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLI 176 (391)
Q Consensus 100 L~~a~~~~~~~~lvlnK~Dl~~~~~---~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLL 176 (391)
|..++..++++++|+||+||.++.+ .+.|...+.++||+.+.+|..++.+++.+.-.+.|++++|+|||||||||||
T Consensus 103 l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 103 LVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSIL 182 (302)
T ss_dssp HHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEEEEECCCCCCHHHHH
Confidence 9999999999999999999998752 5667777888999999999999999999988889999999999999999999
Q ss_pred HHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHH-HhCChhH
Q 016339 177 NALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL-LKVTKQS 255 (391)
Q Consensus 177 n~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l-~~~~~~~ 255 (391)
|+|+ +. .|++|+|.+ ..+.|+|+|+....+.....+++.|+||+....+ ..+..+.
T Consensus 183 n~l~-~~------------~~~~G~i~~----------~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~ 239 (302)
T 2yv5_A 183 SRLT-GE------------ELRTQEVSE----------KTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPRE 239 (302)
T ss_dssp HHHH-SC------------CCCCSCC-------------------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGG
T ss_pred HHHH-Hh------------hCccccccc----------ccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHH
Confidence 9999 88 888898877 1123344444433444334578899999876555 4555566
Q ss_pred HhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHH
Q 016339 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDE 306 (391)
Q Consensus 256 l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~e 306 (391)
+...||++... .|.|..|.|..+|+|.+.+ +..++..|..++.+
T Consensus 240 l~~~f~~~~~~-------~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~ 290 (302)
T 2yv5_A 240 VRNYFREFLRY-------QCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKV 290 (302)
T ss_dssp GGGGCGGGHHH-------HHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHc-------cCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 66677764322 1778889999999998654 33456666555543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=247.99 Aligned_cols=253 Identities=29% Similarity=0.539 Sum_probs=193.9
Q ss_pred CcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccccccccccccccceeEEEEEecCCCCCHHHHHHHH
Q 016339 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100 (391)
Q Consensus 21 ~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L 100 (391)
+..+.|..++.+.+....+.|||+|.+.... ++...|.++.+|.+.+.++.++|+|.+++|+++..|.++...+++++
T Consensus 31 ~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~--~~~~~iwD~qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 31 GERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CCEEEEEECGGGTTTTCCCCTTCEEEEECCC--SSSEEEEEECCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred CcEEEEEEcccccccCCCCCCccEEEEEEcC--CCeEEEEEEccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 5678999999987455678999999876322 34789999999999999999999999999999999887888899999
Q ss_pred HHHHhCCCCEEEEEeCCCCCCHHH---HHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHH
Q 016339 101 VEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177 (391)
Q Consensus 101 ~~a~~~~~~~~lvlnK~Dl~~~~~---~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn 177 (391)
..++..++++++|+||+||.++.+ ...|...+..+ +..+.+|..++.+++.+--.+.|++++|+||||||||||||
T Consensus 109 ~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~ 187 (301)
T 1u0l_A 109 VLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLN 187 (301)
T ss_dssp HHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHH
T ss_pred HHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHH
Confidence 988888999999999999988754 44555555444 78899999999999998777799999999999999999999
Q ss_pred HHhcCCCCCCcccccCccCCCCCccee---cCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChh
Q 016339 178 ALRSSPHASDAADVDNWFEPILGSKWF---EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254 (391)
Q Consensus 178 ~L~gl~~~~~~~~~~~~~~p~~G~I~~---~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~ 254 (391)
+|+|+. .|++|+|.+ +|..+.... ..+.....+++.|+|++....+..+...
T Consensus 188 ~l~g~~------------~~~~G~i~~~~~~g~~~t~~~-------------~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 188 AINPGL------------KLRVSEVSEKLQRGRHTTTTA-------------QLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHSTTC------------CCC-------------CCCSC-------------CEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred Hhcccc------------cccccceecccCCCCCceeee-------------EEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 999999 899999988 666553221 1222223467888998876665555666
Q ss_pred HHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHH
Q 016339 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 255 ~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~ 308 (391)
++...||+ ++. +.|+|+.|.|..+|+|.+.+ +..++..|...|.++.
T Consensus 243 ~~~~l~~~----~~~---~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse~~ 296 (301)
T 1u0l_A 243 ELKHYFKE----FGD---KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYELL 296 (301)
T ss_dssp HHGGGSTT----SSS---CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----ccc---ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 77788886 343 57889889888899988755 4567777777777654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-26 Score=230.93 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=129.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|++|||++ +|++++|+||||||||||||+|+|++ +|++|+|+++|.++...+
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~G~I~i~G~~~~~~~ 71 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE------------TITSGDLFIGEKRMNDTP 71 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTCC
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC------------CCCCeEEEECCEECCCCC
Confidence 34688999999999999999999 89999999999999999999999999 999999999999886554
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.. .+.+++++|++..+ +.++- +. ....+..+++..+++++|. +||||||||
T Consensus 72 ~~-------~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~---~LSGGqrQR 141 (381)
T 3rlf_A 72 PA-------ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK---ALSGGQRQR 141 (381)
T ss_dssp GG-------GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGG---GSCHHHHHH
T ss_pred HH-------HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---HCCHHHHHH
Confidence 32 35689999886443 22221 11 1234556788888899999 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHh
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREE 312 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~ 312 (391)
++||||+ +.+|+++|+| |+.....++++|.++.++..
T Consensus 142 VaiArAL-~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g 184 (381)
T 3rlf_A 142 VAIGRTL-VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184 (381)
T ss_dssp HHHHHHH-HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC
Confidence 9999999 9999999999 88999999999999976543
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-27 Score=233.73 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=126.0
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|++|||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++....
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~G~I~i~G~~i~~~~ 72 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE------------QPDSGEISLSGKTIFSKN 72 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS------------CCSEEEEEETTEEEESSS
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC------------CCCCcEEEECCEECcccc
Confidence 34588999999999999999999 89999999999999999999999999 999999999998873211
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.. .+...+++++++|++..+ +.++- + .....+..+++.++++++|. +||||||||
T Consensus 73 ~~---~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~---~LSGGq~QR 146 (359)
T 3fvq_A 73 TN---LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH---ELSGGQQQR 146 (359)
T ss_dssp CB---CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGG---GSCHHHHHH
T ss_pred cc---cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChh---hCCHHHHHH
Confidence 11 011236788888875432 11110 1 11234556788888899999 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
++||||+ +.+|+++|+| |+.....+++.+.++.++.
T Consensus 147 ValArAL-~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~ 188 (359)
T 3fvq_A 147 AALARAL-APDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188 (359)
T ss_dssp HHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 8889999988887776543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-26 Score=228.37 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=126.3
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 5 RVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY------------KPTSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC------------CCCccEEEECCEECCCCCh
Confidence 4578999999888999999999 89999999999999999999999999 9999999999988754432
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
..+++++++|++..+ +.++- + .....+..+++.++++++|. +||||||||+
T Consensus 73 -------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~---~LSgGq~QRv 142 (359)
T 2yyz_A 73 -------KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT---QLSGGQQQRV 142 (359)
T ss_dssp -------GGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGG---GSCHHHHHHH
T ss_pred -------hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChh---hCCHHHHHHH
Confidence 135688888875432 11110 1 11234566788888899998 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+||||+ +.+|+++|+| |+.....++++|.++.++.
T Consensus 143 alArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 183 (359)
T 2yyz_A 143 ALARAL-VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL 183 (359)
T ss_dssp HHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 999999 9999999999 8899999999999987653
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-26 Score=227.14 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=127.7
Q ss_pred cCCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 135 WGYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 135 ~g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+.+++++++|+. ..+|++|||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++
T Consensus 25 i~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~------------~p~~G~I~i~G~~i 92 (366)
T 3tui_C 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------------RPTEGSVLVDGQEL 92 (366)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEEC
T ss_pred EEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC------------CCCceEEEECCEEC
Confidence 346889999964 35899999999 89999999999999999999999999 99999999999988
Q ss_pred cccccccCCCcceeeeEEEEeccCCCcc----cCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYL----ADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~l----~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
...+.... +...+.+++++|.+..+. .++ .+. ....+..+++.++.+.+|. +||||
T Consensus 93 ~~~~~~~~--~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~---~LSGG 167 (366)
T 3tui_C 93 TTLSESEL--TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS---NLSGG 167 (366)
T ss_dssp SSCCHHHH--HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTT---TSCHH
T ss_pred CcCCHHHH--HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChh---hCCHH
Confidence 66543210 012356899998854321 111 011 1233556677778888998 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
||||++||||+ +.+|+++|+| |+.....++++|.+++++.
T Consensus 168 qkQRVaIArAL-~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~ 213 (366)
T 3tui_C 168 QKQRVAIARAL-ASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213 (366)
T ss_dssp HHHHHHHHHHT-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 8999999999999997653
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-25 Score=223.02 Aligned_cols=153 Identities=16% Similarity=0.253 Sum_probs=126.3
Q ss_pred CCeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++++++| ++..+|+++||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++...+
T Consensus 16 ~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 16 EFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE------------RPTKGDVWIGGKRVTDLP 83 (355)
T ss_dssp EEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTCC
T ss_pred EEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCccEEEECCEECCcCC
Confidence 357889999 8888999999999 89999999999999999999999999 999999999998875433
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..+++++++|++..+ +.++- + .....+..+++.++++++|. +||||||||
T Consensus 84 ~-------~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~---~LSGGq~QR 153 (355)
T 1z47_A 84 P-------QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH---ELSGGQQQR 153 (355)
T ss_dssp G-------GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGG---GSCHHHHHH
T ss_pred h-------hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcc---cCCHHHHHH
Confidence 2 236788888875432 11110 1 11234556788888889998 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
++||||+ +.+|+++|+| |+.....++++|.++.++.
T Consensus 154 valArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 195 (355)
T 1z47_A 154 VALARAL-APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM 195 (355)
T ss_dssp HHHHHHH-TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 9999999 9999999999 8999999999999987653
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-26 Score=216.90 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=124.2
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|++|||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++...+.
T Consensus 13 ~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 13 EASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL------------SPSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS------------CCSSCEEEETTEETTTSCH
T ss_pred EEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECCEECCcCCH
Confidence 4578999999999999999999 89999999999999999999999999 9999999999988765433
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC----------c---ccchHHHHhCChhHHhhhchhHHhhcCccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT----------P---GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt----------p---g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
.. ..+.++++++..... +.++ . ......+..+++.++.+..|. +|||||+||++|
T Consensus 81 ~~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~QRv~i 152 (266)
T 4g1u_C 81 KA-----LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYR---VLSGGEQQRVQL 152 (266)
T ss_dssp HH-----HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGG---GCCHHHHHHHHH
T ss_pred HH-----HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcc---cCCHHHHHHHHH
Confidence 21 234567777753321 1111 0 011233456677777788888 999999999999
Q ss_pred ccccccC------CCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLG------EPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 278 aralh~~------eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
|||+ +. +|+++|+| |+.....+++++.++.++.
T Consensus 153 AraL-~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~ 197 (266)
T 4g1u_C 153 ARVL-AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE 197 (266)
T ss_dssp HHHH-HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHH-hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 9999 88 99999999 8999999999999997664
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-26 Score=215.21 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=122.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++...+.
T Consensus 6 ~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 6 RAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD------------APTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS------------CCSEEEEEETTEECCSSCH
T ss_pred EEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCCCCH
Confidence 4578999999888999999999 99999999999999999999999999 9999999999987754332
Q ss_pred ccCCCcce-eeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 215 KSGRGKHT-TRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 215 ~~~~~~~t-tr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
... ... .+.++++++....+ +.++- +. ....+..+++.+..+.+|. +|||||+||
T Consensus 74 ~~~--~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~qr 148 (224)
T 2pcj_A 74 KEL--SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPY---ELSGGEQQR 148 (224)
T ss_dssp HHH--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGG---GSCHHHHHH
T ss_pred HHH--HHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHHHHH
Confidence 100 001 14688888864322 11110 10 1123445666666777787 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....+.+++.+++++
T Consensus 149 v~laral-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 189 (224)
T 2pcj_A 149 VAIARAL-ANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189 (224)
T ss_dssp HHHHHHT-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 9999999 9999999999 899999999999998654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=223.56 Aligned_cols=154 Identities=17% Similarity=0.255 Sum_probs=124.6
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|+++||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++...+
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~ 79 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE------------EPTEGRIYFGDRDVTYLP 79 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSC
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCceEEEECCEECCCCC
Confidence 34578999999888999999999 89999999999999999999999999 999999999998875443
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..+++++++|++..+ +.++ .+. ....+..+++.++++++|. +||||||||
T Consensus 80 ~-------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~---~LSGGq~QR 149 (372)
T 1v43_A 80 P-------KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA---QLSGGQRQR 149 (372)
T ss_dssp G-------GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTT---TCCSSCHHH
T ss_pred h-------hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChh---hCCHHHHHH
Confidence 2 135688888874322 1111 011 1234567788888899998 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
++||||+ +.+|+++|+| |+.....++++|.++.++.
T Consensus 150 valArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 191 (372)
T 1v43_A 150 VAVARAI-VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 191 (372)
T ss_dssp HHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 8899999999999987653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=223.32 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=126.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 5 KLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY------------KPTSGKIYFDEKDVTELPP 72 (362)
T ss_dssp EEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCG
T ss_pred EEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC------------CCCceEEEECCEECCcCCH
Confidence 4578999999888999999999 89999999999999999999999999 9999999999988755432
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
..+++++++|++..+ +.++- +. ....+..+++.++.+++|. +||||||||+
T Consensus 73 -------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~---~LSGGq~QRv 142 (362)
T 2it1_A 73 -------KDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW---QLSGGQQQRV 142 (362)
T ss_dssp -------GGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGG---GSCHHHHHHH
T ss_pred -------hHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChh---hCCHHHHHHH
Confidence 135688888875432 11211 11 1233556777778888898 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+||||+ +.+|+++|+| |+.....+.++|.++.++.
T Consensus 143 alArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 183 (362)
T 2it1_A 143 AIARAL-VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL 183 (362)
T ss_dssp HHHHHH-TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhC
Confidence 999999 9999999999 8899999999999987653
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.4e-26 Score=216.62 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=123.1
Q ss_pred cCCeeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|++. .+|++|||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++..
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~------------~p~~G~I~~~G~~i~~- 74 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL------------KPSSGRILFDNKPIDY- 74 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECCC-
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCeEEEECCEECCc-
Confidence 3457899999754 5999999999 89999999999999999999999999 9999999999988731
Q ss_pred ccccCCCcceeeeEEEEeccCCC-----cccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGG-----YLADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~-----~l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.... .....+.+++++|+... .+.++ .+. ....+..+++.++.+.+|. .|||||+
T Consensus 75 ~~~~--~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~LSgGqk 149 (275)
T 3gfo_A 75 SRKG--IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTH---CLSFGQK 149 (275)
T ss_dssp SHHH--HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGG---GSCHHHH
T ss_pred cccc--HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcc---cCCHHHH
Confidence 1100 01123568888886321 11111 111 1233556777788888888 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....+++++.+++.+
T Consensus 150 QRv~iAraL-~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~ 192 (275)
T 3gfo_A 150 KRVAIAGVL-VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192 (275)
T ss_dssp HHHHHHHHH-TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh
Confidence 999999999 9999999999 899999999999999733
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-25 Score=223.06 Aligned_cols=159 Identities=13% Similarity=0.174 Sum_probs=126.2
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||++ +|++++|+||||||||||||+|+|+. +|++|+|+++|.++.....
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 5 RLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE------------EPSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEEEEEGGG
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC------------CCCccEEEECCEECccccc
Confidence 4578999999888999999999 99999999999999999999999999 9999999999988754110
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.....+ ..+++++++|++..+ +.++- +. ....+..+++.++++++|. +||||||||+
T Consensus 73 ~~~~~~-~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~---~LSGGq~QRv 148 (372)
T 1g29_1 73 GIFVPP-KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR---ELSGGQRQRV 148 (372)
T ss_dssp TEECCG-GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGG---GSCHHHHHHH
T ss_pred cccCCH-hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcc---cCCHHHHHHH
Confidence 000001 236789999875433 11211 11 1223456677778888898 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+||||+ +.+|+++|+| |+.....++++|.++.++.
T Consensus 149 alArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 189 (372)
T 1g29_1 149 ALGRAI-VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189 (372)
T ss_dssp HHHHHH-HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 999999 9999999999 8999999999999987653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-25 Score=222.41 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=126.3
Q ss_pred CCeeEEEEcCCcc--chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 136 GYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~~~~--~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.+++++++|++.. +|+++||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++...
T Consensus 5 ~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD------------VPSTGELYFDDRLVASN 72 (353)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS------------CCSEEEEEETTEEEEET
T ss_pred EEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECccc
Confidence 3578999998888 999999999 89999999999999999999999999 99999999999887542
Q ss_pred ccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
... .. +...+++++++|++..+ +.++ .+. ....+..+++.++++++|. +|||||||
T Consensus 73 ~~~-~~-~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~---~LSGGq~Q 147 (353)
T 1oxx_K 73 GKL-IV-PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR---ELSGAQQQ 147 (353)
T ss_dssp TEE-SS-CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG---GSCHHHHH
T ss_pred ccc-cC-ChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChh---hCCHHHHH
Confidence 100 00 11246789999875432 1111 011 1234556788888889998 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
|++||||+ +.+|+++|+| |+.....++++|.++.++.
T Consensus 148 RvalAraL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 190 (353)
T 1oxx_K 148 RVALARAL-VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL 190 (353)
T ss_dssp HHHHHHHH-TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 8899999999999987653
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-26 Score=217.05 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=123.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|++|||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++. .+
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~i~-~~ 91 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE------------DFDEGEIIIDGINLK-AK 91 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEESS-ST
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC------------CCCCcEEEECCEECC-Cc
Confidence 45688999999888999999999 89999999999999999999999999 999999999998774 21
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC----c----cc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT----P----GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt----p----g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
... .....+.++++++....+ +.++ + +. ....+..+++.+..+.+|. .|||||+|
T Consensus 92 ~~~--~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~LSgGqkQ 166 (263)
T 2olj_A 92 DTN--LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD---SLSGGQAQ 166 (263)
T ss_dssp TCC--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGG---GSCHHHHH
T ss_pred ccc--HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChh---hCCHHHHH
Confidence 110 011235688888864321 1111 0 11 1123455677777777888 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 167 Rv~lAraL-~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 208 (263)
T 2olj_A 167 RVAIARAL-AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 208 (263)
T ss_dssp HHHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 99999999 9999999999 899999999999998654
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-26 Score=213.13 Aligned_cols=157 Identities=15% Similarity=0.228 Sum_probs=119.5
Q ss_pred CeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++ ..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD------------KPTEGEVYIDNIKTND 71 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTT
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCceEEEECCEEccc
Confidence 4788999974 35899999999 89999999999999999999999999 9999999999988755
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc----------ccc--------hHHHHhCChhHH-hhhchhHHhhcC
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP----------GFN--------QPSLLKVTKQSL-AQTFPEIKEMLK 268 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp----------g~~--------~~~l~~~~~~~l-~~~~p~~~~~LS 268 (391)
.+.... .....+.+++++|+...+ +.++- +.. ...+..+++.+. .+.+|. +||
T Consensus 72 ~~~~~~-~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LS 147 (235)
T 3tif_A 72 LDDDEL-TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN---QLS 147 (235)
T ss_dssp CCHHHH-HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG---GSC
T ss_pred CCHHHH-HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChh---hCC
Confidence 443210 000123588888874322 11110 111 122334555443 366777 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||||+ +.+|+++|+| |+.....+++++.+++.+
T Consensus 148 gGq~QRv~iAral-~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 194 (235)
T 3tif_A 148 GGQQQRVAIARAL-ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194 (235)
T ss_dssp HHHHHHHHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999 899999999999999765
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-25 Score=221.01 Aligned_cols=150 Identities=16% Similarity=0.230 Sum_probs=123.4
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++. +++++||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~~~g~~i~~~~~- 69 (348)
T 3d31_A 4 IESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH------------VPDSGRILLDGKDVTDLSP- 69 (348)
T ss_dssp EEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCH-
T ss_pred EEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC------------CCCCcEEEECCEECCCCch-
Confidence 47899999887 999999999 89999999999999999999999999 9999999999987754221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc------------ccchHHHHhCChhHHhhhchhHHhhcCccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP------------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp------------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
..+++++++|++..+ +.++- ......+..+++.++++++|. +||||||||++|||
T Consensus 70 ------~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~---~LSgGq~QRvalAr 140 (348)
T 3d31_A 70 ------EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL---TLSGGEQQRVALAR 140 (348)
T ss_dssp ------HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGG---GSCHHHHHHHHHHH
T ss_pred ------hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChh---hCCHHHHHHHHHHH
Confidence 235677777764332 11110 112334666788888889998 99999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 141 aL-~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~ 176 (348)
T 3d31_A 141 AL-VTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176 (348)
T ss_dssp HT-TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh
Confidence 99 9999999999 899999999999998765
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-26 Score=215.74 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=123.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc--
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-- 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~-- 211 (391)
+.+++++++|++..+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~------------~p~~G~i~~~g~~~~~~~ 74 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE------------KPSEGAIIVNGQNINLVR 74 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECCEEE
T ss_pred EEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEccccc
Confidence 34578999999888999999999 89999999999999999999999999 9999999999987641
Q ss_pred --------cccccCCCcceeeeEEEEeccCCCc----ccCC----c----cc--------chHHHHhCChhHH-hhhchh
Q 016339 212 --------VSTKSGRGKHTTRHVSLLPLSGGGY----LADT----P----GF--------NQPSLLKVTKQSL-AQTFPE 262 (391)
Q Consensus 212 --------v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt----p----g~--------~~~~l~~~~~~~l-~~~~p~ 262 (391)
.+... .....+.++++++....+ +.++ + +. ....+..+++.+. .+.+|.
T Consensus 75 ~~~~~~~~~~~~~--~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 152 (262)
T 1b0u_A 75 DKDGQLKVADKNQ--LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV 152 (262)
T ss_dssp CTTSSEEESCHHH--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGG
T ss_pred cccccccccChhh--HHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcc
Confidence 11100 001235688888864321 1111 0 11 1223556677777 788888
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 153 ---~LSgGq~qRv~lAraL-~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 202 (262)
T 1b0u_A 153 ---HLSGGQQQRVSIARAL-AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE 202 (262)
T ss_dssp ---GSCHHHHHHHHHHHHH-HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred ---cCCHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999 9999999999 899999999999998654
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-25 Score=213.91 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=120.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|++|||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++...+.
T Consensus 9 ~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 9 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL------------KADEGRVYFENKDITNKEP 76 (257)
T ss_dssp EEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTTCCH
T ss_pred EEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCH
Confidence 4578999999888999999999 99999999999999999999999999 9999999999987643221
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC------c---c-------------------cchHHHHhCChhHHhhhchh
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT------P---G-------------------FNQPSLLKVTKQSLAQTFPE 262 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt------p---g-------------------~~~~~l~~~~~~~l~~~~p~ 262 (391)
.. ...+.+++++|+...+ +.++ . + .....+..+++..+.+.+|.
T Consensus 77 ~~----~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 152 (257)
T 1g6h_A 77 AE----LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152 (257)
T ss_dssp HH----HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred HH----HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch
Confidence 10 0123466666653211 0000 0 1 01223456677777788888
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+++++.+++++
T Consensus 153 ---~LSgGqkQrv~iAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 202 (257)
T 1g6h_A 153 ---ELSGGQMKLVEIGRAL-MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202 (257)
T ss_dssp ---GSCHHHHHHHHHHHHH-HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ---hCCHHHHHHHHHHHHH-HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC
Confidence 9999999999999999 9999999999 899999999999998654
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-26 Score=215.54 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=122.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++....
T Consensus 16 l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI------------KPSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEETTTCH
T ss_pred EEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCccH
Confidence 44688999999888999999999 89999999999999999999999999 999999999998764311
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ...+.++++++....+ +.++- +. ....+..+++.++.+..|. .|||||+||
T Consensus 84 ~------~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LSgGq~qR 154 (256)
T 1vpl_A 84 H------EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS---TYSKGMVRK 154 (256)
T ss_dssp H------HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGG---GCCHHHHHH
T ss_pred H------HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChh---hCCHHHHHH
Confidence 1 1234578888764321 11110 11 1123445566667777787 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....++++|.+++++
T Consensus 155 v~lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 195 (256)
T 1vpl_A 155 LLIARAL-MVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 195 (256)
T ss_dssp HHHHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 899999999999998643
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-25 Score=208.54 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=119.1
Q ss_pred cCCeeEEEEc--CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~--~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++| ++..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~i~g~~~~~ 75 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY------------IPENGQVLIDGHDLAL 75 (247)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEETTT
T ss_pred eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEhhh
Confidence 3468899999 4567999999999 99999999999999999999999999 9999999999987754
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCC-----cccc----hHHHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADT-----PGFN----QPSLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-----pg~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.+.. ...+.++++++....+ +.++ +... ...+..+++.++.+.+|. ....|||||
T Consensus 76 ~~~~-----~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 150 (247)
T 2ff7_A 76 ADPN-----WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 150 (247)
T ss_dssp SCHH-----HHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHH
T ss_pred CCHH-----HHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHH
Confidence 3321 1235688888864321 1111 1111 122334455555555541 123899999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+||++||||+ +.+|+++|+| |+.....++++|.++.
T Consensus 151 ~qRv~iAraL-~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 192 (247)
T 2ff7_A 151 RQRIAIARAL-VNNPKILIFDEATSALDYESEHVIMRNMHKIC 192 (247)
T ss_dssp HHHHHHHHHH-TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 9999999999 9999999999 8999999999999984
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-25 Score=212.09 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=121.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc--c
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG--E 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~--~ 211 (391)
+.+++++++|++..+|+++||.+ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++. .
T Consensus 22 l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE------------PATSGTVNLFGKMPGKVG 89 (279)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTBCCC---
T ss_pred EEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCeEEEECCEEccccc
Confidence 44688999999888999999999 99999999999999999999999999 999999999998764 2
Q ss_pred cccccCCCcceeeeEEEEeccCC----C--cccCCc--------c-----------cchHHHHhCChhHHhhhchhHHhh
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG----G--YLADTP--------G-----------FNQPSLLKVTKQSLAQTFPEIKEM 266 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~----~--~l~Dtp--------g-----------~~~~~l~~~~~~~l~~~~p~~~~~ 266 (391)
.... ...+.++++++... . .+.++- + .....+..+++.++.+.++. .
T Consensus 90 ~~~~-----~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~ 161 (279)
T 2ihy_A 90 YSAE-----TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG---Y 161 (279)
T ss_dssp CCHH-----HHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG---G
T ss_pred CCHH-----HHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh---h
Confidence 2111 12345777777521 1 111110 0 01123455677777788888 9
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||+||++||+|+ +.+|+++|+| |+.....++++|.++.++
T Consensus 162 LSgGqkqRv~lAraL-~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~ 210 (279)
T 2ihy_A 162 LSTGEKQRVMIARAL-MGQPQVLILDEPAAGLDFIARESLLSILDSLSDS 210 (279)
T ss_dssp SCHHHHHHHHHHHHH-HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC
Confidence 999999999999999 9999999999 899999999999998754
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-25 Score=207.42 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=116.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++ .+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 11 l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~~~--- 74 (214)
T 1sgw_A 11 LEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL------------KPLKGEIIYNGVPIT--- 74 (214)
T ss_dssp EEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEGG---
T ss_pred EEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEhh---
Confidence 345789999988 9999999999 99999999999999999999999999 999999999997763
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC-------------cccchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT-------------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
. ..+.++++++....+ +.++ .......+..+++... +..+. .|||||+||++
T Consensus 75 ~-------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~---~LSgGqkqrv~ 143 (214)
T 1sgw_A 75 K-------VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLG---ELSQGTIRRVQ 143 (214)
T ss_dssp G-------GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGG---GSCHHHHHHHH
T ss_pred h-------hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChh---hCCHHHHHHHH
Confidence 1 124466776653221 1111 0011223445555555 66677 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+++++.++.++
T Consensus 144 laraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 182 (214)
T 1sgw_A 144 LASTL-LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182 (214)
T ss_dssp HHHHT-TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHH-HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence 99999 9999999999 888999999999998654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-25 Score=207.56 Aligned_cols=154 Identities=12% Similarity=0.170 Sum_probs=118.3
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 8 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV------------RAQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTTCCH
T ss_pred EEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCCH
Confidence 4578999998888999999999 99999999999999999999999999 9999999999987643322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC------ccc--------chHHHHhC-ChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT------PGF--------NQPSLLKV-TKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt------pg~--------~~~~l~~~-~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.. ...+.++++++....+ +.++ +.. ....+..+ ++....+..+. .|||||+||+
T Consensus 76 ~~----~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~---~LSgGq~qrv 148 (240)
T 1ji0_A 76 HV----INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG---TLSGGEQQML 148 (240)
T ss_dssp HH----HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSS---SSCHHHHHHH
T ss_pred HH----HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChh---hCCHHHHHHH
Confidence 10 0123477887763221 1111 000 01123334 25555566676 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||+|+ +.+|+++|+| |+.....++++|.++++
T Consensus 149 ~lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~ 187 (240)
T 1ji0_A 149 AIGRAL-MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp HHHHHH-TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999 9999999999 89999999999999865
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-24 Score=211.70 Aligned_cols=157 Identities=20% Similarity=0.280 Sum_probs=121.1
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|. +..+|++|||.+ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++...
T Consensus 54 i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~G~~i~~~ 121 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY------------DISSGCIRIDGQDISQV 121 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS------------CCSEEEEEETTEETTSB
T ss_pred EEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC------------CCCCcEEEECCEEcccC
Confidence 45789999995 567999999999 89999999999999999999999999 99999999999988665
Q ss_pred ccccCCCcceeeeEEEEeccCCCc---ccCC-----cccc----hHHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY---LADT-----PGFN----QPSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-----pg~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... ..+.+++++|+...+ +.++ +... ...+..+++.+....+|. ....|||||+
T Consensus 122 ~~~~-----~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 122 TQAS-----LRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp CHHH-----HHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred CHHH-----HhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 4321 346788888874332 2221 1111 122333444455555552 1137999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||++||||+ +.+|+++|+| |+.....++++|.++..
T Consensus 197 QRvaiARAL-~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~ 238 (306)
T 3nh6_A 197 QRVAIARTI-LKAPGIILLDEATSALDTSNERAIQASLAKVCA 238 (306)
T ss_dssp HHHHHHHHH-HHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC
Confidence 999999999 9999999999 89999999999988754
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-24 Score=217.10 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=122.7
Q ss_pred cCCeeEEEEc--CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~--~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++| ++..+|++|||++ +|++++|+|||||||||||++|+|++ + ++|+|.++|+++..
T Consensus 20 i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~-~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL------------N-TEGEIQIDGVSWDS 86 (390)
T ss_dssp EEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS------------E-EEEEEEESSCBTTS
T ss_pred EEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC------------C-CCeEEEECCEECCc
Confidence 4568899999 6678999999999 89999999999999999999999998 7 89999999998865
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCCc----c----cchHHHHhCChhHHhhhchhHHhh-----------cCc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADTP----G----FNQPSLLKVTKQSLAQTFPEIKEM-----------LKA 269 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp----g----~~~~~l~~~~~~~l~~~~p~~~~~-----------LSg 269 (391)
.+... ..+.+++++|++..+ +.++- . .....+..+++.++.+++|. . |||
T Consensus 87 ~~~~~-----~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~---~l~~~i~~~g~~LSG 158 (390)
T 3gd7_A 87 ITLEQ-----WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPG---KLDFVLVDGGCVLSH 158 (390)
T ss_dssp SCHHH-----HHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTT---GGGCEECTTTTTSCH
T ss_pred CChHH-----HhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhccc---ccccccccccccCCH
Confidence 54321 246788888875433 11111 1 12234566788888888888 6 999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|||||++||||+ +.+|+++|+| |+.....++++|.++.
T Consensus 159 GqrQRvalARAL-~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~ 202 (390)
T 3gd7_A 159 GHKQLMCLARSV-LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF 202 (390)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 999999999999 9999999999 7888888888887653
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-24 Score=207.62 Aligned_cols=150 Identities=16% Similarity=0.269 Sum_probs=119.0
Q ss_pred CeeEEEEcC--C---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 137 YEPLFCSVE--S---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 137 ~~~v~~s~~--~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+++++++|+ + ..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~------------~p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI------------EPTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECC
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECCEECc
Confidence 578899997 4 56999999999 89999999999999999999999999 999999999997663
Q ss_pred ccccccCCCcceeeeEEEEeccC-CC----cccCC---------c--c---cchHHHHhCChh--HHhhhchhHHhhcCc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG-GG----YLADT---------P--G---FNQPSLLKVTKQ--SLAQTFPEIKEMLKA 269 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~-~~----~l~Dt---------p--g---~~~~~l~~~~~~--~l~~~~p~~~~~LSg 269 (391)
.. ...+.++++++.. .. .+.++ + . .....+..+++. ++.+.+|. .|||
T Consensus 73 ~~--------~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~---~LSg 141 (266)
T 2yz2_A 73 GY--------EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF---FLSG 141 (266)
T ss_dssp HH--------HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGG---GSCH
T ss_pred hH--------HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChh---hCCH
Confidence 21 1234466666642 11 11010 0 0 122345667777 77888888 9999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 142 Gq~qRv~lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 187 (266)
T 2yz2_A 142 GEKRRVAIASVI-VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187 (266)
T ss_dssp HHHHHHHHHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc
Confidence 999999999999 9999999999 899999999999998654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-24 Score=204.97 Aligned_cols=148 Identities=14% Similarity=0.166 Sum_probs=115.7
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++ .|+++||.+ + ++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 4 ~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~- 67 (240)
T 2onk_A 4 KVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV------------KPDRGEVRLNGADITPLPP- 67 (240)
T ss_dssp EEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCT-
T ss_pred EEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCch-
Confidence 4788999975 499999999 8 999999999999999999999999 9999999999987643211
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------c------cchHHHHhCChhHHhhhchhHHhhcCcccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------G------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
..+.++++++....+ +.++- + .....+..+++.++.+.+|. .|||||+||++||
T Consensus 68 ------~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGqkqRv~lA 138 (240)
T 2onk_A 68 ------ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA---RLSGGERQRVALA 138 (240)
T ss_dssp ------TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGG---GSCHHHHHHHHHH
T ss_pred ------hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChh---hCCHHHHHHHHHH
Confidence 123455666543211 11110 0 11233556677777788888 9999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+ +.+|+++|+| |+.....+++++.++.++
T Consensus 139 ral-~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 175 (240)
T 2onk_A 139 RAL-VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE 175 (240)
T ss_dssp HHH-TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999 9999999999 899999999999998654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-24 Score=206.35 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=114.8
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|++ ..+|++|||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY------------QPTGGKVLLDGEPLV 84 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCCEEEECCEEcc
Confidence 346889999976 67999999999 89999999999999999999999999 999999999998875
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc---ccCC-----cccc--h---HHHHhCChhHH-----------hhhchhHHhh
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY---LADT-----PGFN--Q---PSLLKVTKQSL-----------AQTFPEIKEM 266 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-----pg~~--~---~~l~~~~~~~l-----------~~~~p~~~~~ 266 (391)
..+.. ...+.++++++....+ +.++ +... . ..+......++ .+..+. .
T Consensus 85 ~~~~~-----~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~---~ 156 (271)
T 2ixe_A 85 QYDHH-----YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGN---Q 156 (271)
T ss_dssp GBCHH-----HHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGT---T
T ss_pred cCCHH-----HHhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcC---C
Confidence 43321 1235688888764321 1111 0000 0 01111122222 233444 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||||+||++||||+ +.+|+++|+| |+.....++++|.++..
T Consensus 157 LSgGq~QRv~lAraL-~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 204 (271)
T 2ixe_A 157 LSGGQRQAVALARAL-IRKPRLLILDNATSALDAGNQLRVQRLLYESPE 204 (271)
T ss_dssp SCHHHHHHHHHHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999 88999999999998754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-24 Score=204.29 Aligned_cols=154 Identities=15% Similarity=0.218 Sum_probs=114.2
Q ss_pred CeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
+++++++| ++..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 71 (243)
T 1mv5_A 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY------------QPTAGEITIDGQPIDNISL 71 (243)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS------------CCSBSCEEETTEESTTTSC
T ss_pred EEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEhhhCCH
Confidence 57889999 6678999999999 89999999999999999999999999 9999999999987754332
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCC------cccc----hHHHHhCChhHHhhhchh--------HHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADT------PGFN----QPSLLKVTKQSLAQTFPE--------IKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dt------pg~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~q 273 (391)
.. ..+.++++++....+ +.++ +... ...+..+++.++.+.+|. ....|||||+|
T Consensus 72 ~~-----~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~q 146 (243)
T 1mv5_A 72 EN-----WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQ 146 (243)
T ss_dssp SC-----CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHH
T ss_pred HH-----HHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHH
Confidence 11 234466777653221 1111 1111 112223344444444431 11389999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|++||||+ +.+|+++|+| |+.....++++|.++.
T Consensus 147 rv~lAral-~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 147 RLAIARAF-LRNPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp HHHHHHHH-HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 7888889999998886
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-24 Score=203.41 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=120.5
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++++++|+ +..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.+. ..++.++
T Consensus 6 ~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~-~~i~~v~ 72 (253)
T 2nq2_C 6 SVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH------------RPIQGKIEVY-QSIGFVP 72 (253)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS------------CCSEEEEEEC-SCEEEEC
T ss_pred EEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEEe-ccEEEEc
Confidence 4578999998 788999999999 99999999999999999999999999 9999999843 4577777
Q ss_pred cccCCCccee--eeEEEEeccCCCcc-cCC---cccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCc
Q 016339 214 TKSGRGKHTT--RHVSLLPLSGGGYL-ADT---PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287 (391)
Q Consensus 214 ~~~~~~~~tt--r~i~~v~~~~~~~l-~Dt---pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~ 287 (391)
+.+....+.| .++.+......+.. ... .......+..+++.++.+..+. .|||||+||++||+|+ +.+|+
T Consensus 73 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~qrv~lAraL-~~~p~ 148 (253)
T 2nq2_C 73 QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT---SLSGGQRQLILIARAI-ASECK 148 (253)
T ss_dssp SCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG---GSCHHHHHHHHHHHHH-HTTCS
T ss_pred CCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh---hCCHHHHHHHHHHHHH-HcCCC
Confidence 7655443333 33322110000000 000 0112334566777778888888 9999999999999999 99999
Q ss_pred EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 288 CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 288 ~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++|+| |+.....+.+++.++.++
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~ 177 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQS 177 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999 899999999999998654
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-24 Score=204.94 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=109.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcC--CCCCCcccccCccCCCCCcceecCcccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS--PHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl--~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.+++++++|++..+|+++||++ +|++++|+||||||||||+++|+|+ . +|++|+|.++|.++...
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~------------~p~~G~I~~~g~~~~~~ 72 (250)
T 2d2e_A 5 EIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEY------------TVERGEILLDGENILEL 72 (250)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTC------------EEEEEEEEETTEECTTS
T ss_pred EEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------------CCCceEEEECCEECCCC
Confidence 4578999999888999999999 9999999999999999999999998 6 89999999999876433
Q ss_pred ccccCCCcceeeeEEEEeccCCCc----ccCCc--------c----------cchHHHHhCCh-hHHhhhchhHHhh-cC
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY----LADTP--------G----------FNQPSLLKVTK-QSLAQTFPEIKEM-LK 268 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g----------~~~~~l~~~~~-~~l~~~~p~~~~~-LS 268 (391)
+.... ....++++++....+ +.++- + .....+..+++ ..+.+..|. . ||
T Consensus 73 ~~~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---~~LS 145 (250)
T 2d2e_A 73 SPDER----ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN---EGFS 145 (250)
T ss_dssp CHHHH----HHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT---CC--
T ss_pred CHHHH----HhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc---cCCC
Confidence 22100 011233444432111 00100 0 01122334455 355666666 7 99
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 146 gGqkQrv~iAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 191 (250)
T 2d2e_A 146 GGEKKRNEILQLL-VLEPTYAVLDETDSGLDIDALKVVARGVNAMRG 191 (250)
T ss_dssp --HHHHHHHHHHH-HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999 88999999999998854
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.5e-24 Score=202.44 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=115.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|+++||.+ +|++++|+||||||||||+|+|+|+.. .+|++|+|.++|.++...+
T Consensus 21 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~----------~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED----------YEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT----------CEEEEEEEEETTEEGGGSC
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC----------CCCCCeEEEECCEECCcCC
Confidence 45688999998888999999999 899999999999999999999999830 0689999999998775433
Q ss_pred cccCCCcceeeeEEEEeccCCCcc----cCC--------------ccc--------chHHHHhCChh-HHhhhchhHHhh
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYL----ADT--------------PGF--------NQPSLLKVTKQ-SLAQTFPEIKEM 266 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l----~Dt--------------pg~--------~~~~l~~~~~~-~l~~~~p~~~~~ 266 (391)
.... ....++++++....+. .++ +.. ....+..+++. .+.+..|. ..
T Consensus 91 ~~~~----~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--~~ 164 (267)
T 2zu0_C 91 PEDR----AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN--VG 164 (267)
T ss_dssp HHHH----HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT--TT
T ss_pred HHHH----hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc--cC
Confidence 2110 1234677777633210 000 000 11223334443 34444443 14
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||||+||++||+|+ +.+|+++|+| |+.....++++|.++++
T Consensus 165 LSgGq~QRv~iAraL-~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~ 212 (267)
T 2zu0_C 165 FSGGEKKRNDILQMA-VLEPELCILDESDSGLDIDALKVVADGVNSLRD 212 (267)
T ss_dssp CCHHHHHHHHHHHHH-HHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999 89999999999988753
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-23 Score=195.84 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=114.4
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
++++++ .+|+++||.+ +|++++|+||||||||||+++|+|+. +|+ |+|.++|.++...+..
T Consensus 8 ~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~------------~p~-G~i~~~g~~~~~~~~~- 69 (249)
T 2qi9_C 8 QDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------------SGK-GSIQFAGQPLEAWSAT- 69 (249)
T ss_dssp EEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCE-EEEEETTEEGGGSCHH-
T ss_pred EceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCC-eEEEECCEECCcCCHH-
Confidence 455544 6899999999 99999999999999999999999999 899 9999999876433221
Q ss_pred CCCcceeeeEEEEeccCCCc----ccCC------cc----cchHHHHhCChhHHhhhchhHHhhcCcccccccccccccc
Q 016339 217 GRGKHTTRHVSLLPLSGGGY----LADT------PG----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 217 ~~~~~ttr~i~~v~~~~~~~----l~Dt------pg----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh 282 (391)
...+.++++++....+ +.++ +. .....+..+++.++.+..+. .|||||+||++||+|+
T Consensus 70 ----~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~qrv~lAraL- 141 (249)
T 2qi9_C 70 ----KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN---QLSGGEWQRVRLAAVV- 141 (249)
T ss_dssp ----HHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGG---GCCHHHHHHHHHHHHH-
T ss_pred ----HHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChh---hCCHHHHHHHHHHHHH-
Confidence 1234577777763321 1111 11 11234556777777788888 9999999999999999
Q ss_pred cCCCc-------EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 283 LGEPG-------CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 283 ~~eP~-------~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+.+|+ ++|+| |+.....+.++|.++.++
T Consensus 142 ~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 182 (249)
T 2qi9_C 142 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182 (249)
T ss_dssp HHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 99999 99999 899999999999998654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-23 Score=194.90 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=114.1
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|++ ..+|+++||.+ +|++++|+||||||||||+++|+|+. +| +|+|.++|.++.
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY------------DA-EGDIKIGGKNVN 84 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CC-EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC------------CC-CeEEEECCEEhh
Confidence 456889999976 36999999999 89999999999999999999999998 76 899999998775
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc---ccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY---LADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
..+.. ...+.++++++....+ +.++ +.... ..+..+++.+.....|. ....||||
T Consensus 85 ~~~~~-----~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgG 159 (260)
T 2ghi_A 85 KYNRN-----SIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGG 159 (260)
T ss_dssp GBCHH-----HHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHH
T ss_pred hcCHH-----HHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHH
Confidence 43321 1234578888764321 1111 01111 11223344433322221 11389999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||||+ +.+|+++|+| |+.....++++|.++..
T Consensus 160 qkqRv~lAraL-~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~ 203 (260)
T 2ghi_A 160 ERQRIAIARCL-LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK 203 (260)
T ss_dssp HHHHHHHHHHH-HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999 9999999999 89999999999998853
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-23 Score=192.56 Aligned_cols=151 Identities=18% Similarity=0.147 Sum_probs=108.6
Q ss_pred CCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 136 GYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.+++++++|+ +..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++| .++.+
T Consensus 8 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g-~i~~v 74 (229)
T 2pze_A 8 VMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL------------EPSEGKIKHSG-RISFC 74 (229)
T ss_dssp EEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEECS-CEEEE
T ss_pred EEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------cCCccEEEECC-EEEEE
Confidence 4578899995 467999999999 99999999999999999999999999 99999999988 47777
Q ss_pred ccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhH--------HhhcCccccccccccccccc
Q 016339 213 STKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI--------KEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 213 ~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~--------~~~LSgGq~qr~~iaralh~ 283 (391)
++.+...+.+- .++.+ +... . .......+...++.+..+.+|.. ...|||||+||++||||+ +
T Consensus 75 ~q~~~~~~~tv~enl~~-----~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral-~ 146 (229)
T 2pze_A 75 SQFSWIMPGTIKENIIF-----GVSY-D-EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV-Y 146 (229)
T ss_dssp CSSCCCCSBCHHHHHHT-----TSCC-C-HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHH-H
T ss_pred ecCCcccCCCHHHHhhc-----cCCc-C-hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH-h
Confidence 77654433321 22211 1000 0 00011122334444444444321 138999999999999999 9
Q ss_pred CCCcEEEec------CHHHHHHHHHH-HHHH
Q 016339 284 GEPGCVVKG------DWERYQYYFQL-LDEI 307 (391)
Q Consensus 284 ~eP~~lllD------D~~~~~~~~~l-l~el 307 (391)
.+|+++|+| |+.....+.++ +.++
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 177 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCC
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence 999999999 88888888875 3444
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-22 Score=209.11 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=121.7
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|++ ..+|+++|+++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g~~~~~ 409 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY------------DVDSGSICLDGHDVRD 409 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCCEEEECCEEhhh
Confidence 557899999974 57999999999 89999999999999999999999999 9999999999988765
Q ss_pred cccccCCCcceeeeEEEEeccCCC---cccCC------cccc----hHHHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADT------PGFN----QPSLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt------pg~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
.+... ..+++++++|+... .+.++ +... ...+..+++.+..+.+|+ ....||||
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgG 484 (582)
T 3b5x_A 410 YKLTN-----LRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGG 484 (582)
T ss_pred CCHHH-----HhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHH
Confidence 43321 34568888886322 22221 1221 123344566666666552 12389999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||||+ +.+|+++|+| |+.....+.+.+.++.+
T Consensus 485 q~qr~~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 528 (582)
T 3b5x_A 485 QRQRVAIARAL-LRDAPVLILDEATSALDTESERAIQAALDELQK 528 (582)
T ss_pred HHHHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHcC
Confidence 99999999999 9999999999 88999999999988754
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-23 Score=192.65 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=106.6
Q ss_pred cCCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|+ +..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++| .++.
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g-~i~~ 70 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM------------DKVEGHVAIKG-SVAY 70 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS------------EEEEEEEEECS-CEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECC-EEEE
Confidence 34578999997 467999999999 89999999999999999999999999 99999999998 4777
Q ss_pred cccccCCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHH-----------hhhchhHHhhcCcccccccccc
Q 016339 212 VSTKSGRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL-----------AQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 212 v~~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l-----------~~~~p~~~~~LSgGq~qr~~ia 278 (391)
+++.+... ..| .++.+ +... . .......+..+++.+. .+..+. .|||||+||++||
T Consensus 71 v~Q~~~~~-~~tv~enl~~-----~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~LSgGqkqRv~lA 139 (237)
T 2cbz_A 71 VPQQAWIQ-NDSLRENILF-----GCQL-E-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGV---NLSGGQKQRVSLA 139 (237)
T ss_dssp ECSSCCCC-SEEHHHHHHT-----TSCC-C-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSB---CCCHHHHHHHHHH
T ss_pred EcCCCcCC-CcCHHHHhhC-----cccc-C-HHHHHHHHHHHhhHHHHHhccccccccccCCCC---CCCHHHHHHHHHH
Confidence 77765322 222 22211 1100 0 1111112222222221 123444 8999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLD 305 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~ 305 (391)
||+ +.+|+++|+| |+.....+++++.
T Consensus 140 raL-~~~p~lllLDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 140 RAV-YSNADIYLFDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp HHH-HHCCSEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred HHH-hcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 999 9999999999 8888888888874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-22 Score=191.29 Aligned_cols=148 Identities=17% Similarity=0.215 Sum_probs=115.4
Q ss_pred CeeEEEEcCC----ccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+++++++|++ ..+|+++||.++|++++|+||||||||||+++|+|+. |++|+|.++|.++...
T Consensus 4 ~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-------------p~~G~I~~~g~~~~~~ 70 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-------------PYSGNIFINGMEVRKI 70 (263)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-------------CCEEEEEETTEEGGGC
T ss_pred EEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-------------CCCcEEEECCEECcch
Confidence 4788999976 6799999999999999999999999999999999984 6789999999776422
Q ss_pred ccccCCCcceeeeEE-EEeccCCC--cccCC-----------cccchHHHHhCChh-HHhhhchhHHhhcCccccccccc
Q 016339 213 STKSGRGKHTTRHVS-LLPLSGGG--YLADT-----------PGFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~-~v~~~~~~--~l~Dt-----------pg~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
. ..+.++ ++++.... .+.++ .......+..+++. ++.+..|. .|||||+||++|
T Consensus 71 -------~-~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---~LSgGqkqRv~l 139 (263)
T 2pjz_A 71 -------R-NYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLY---KLSAGQSVLVRT 139 (263)
T ss_dssp -------S-CCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGG---GSCHHHHHHHHH
T ss_pred -------H-HhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChh---hCCHHHHHHHHH
Confidence 1 124566 66665322 11111 01112335566776 77777887 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 140 AraL-~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~ 176 (263)
T 2pjz_A 140 SLAL-ASQPEIVGLDEPFENVDAARRHVISRYIKEYGK 176 (263)
T ss_dssp HHHH-HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS
T ss_pred HHHH-HhCCCEEEEECCccccCHHHHHHHHHHHHHhcC
Confidence 9999 9999999999 88999999999988754
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-22 Score=211.65 Aligned_cols=157 Identities=15% Similarity=0.215 Sum_probs=121.6
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|++ ..+|+++|+++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++...
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g~~i~~~ 422 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY------------DVDRGQILVDGIDIRKI 422 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS------------CCSEEEEEETTEEGGGS
T ss_pred EEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc------------CCCCeEEEECCEEhhhC
Confidence 456889999964 56999999999 89999999999999999999999999 99999999999988765
Q ss_pred ccccCCCcceeeeEEEEeccCCC---cccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... ..+++++++|+... .+.++ +.... ..+..++..+..+.+|. ....|||||+
T Consensus 423 ~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 423 KRSS-----LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp CHHH-----HHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred CHHH-----HHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 5422 34678888887432 22221 22211 22233445555555552 2248999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||++||||+ +.+|+++|+| |+.....+.+.+.++.+
T Consensus 498 Qrv~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 539 (598)
T 3qf4_B 498 QLLAITRAF-LANPKILILDEATSNVDTKTEKSIQAAMWKLME 539 (598)
T ss_dssp HHHHHHHHH-HTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-hcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC
Confidence 999999999 9999999999 88999999999988753
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.8e-22 Score=208.56 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=121.8
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|++ ..+|+++|+++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~------------~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY------------DIDEGHILMDGHDLRE 409 (582)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT------------CCSEEEEEETTEETTT
T ss_pred EEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc------------CCCCCeEEECCEEccc
Confidence 456889999974 57999999999 89999999999999999999999999 9999999999988765
Q ss_pred cccccCCCcceeeeEEEEeccCCC---cccCC------cccc----hHHHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADT------PGFN----QPSLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt------pg~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
.+... ..+++++++|+... .+.++ +... ...+..+++.+..+.+|+ ....||||
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgG 484 (582)
T 3b60_A 410 YTLAS-----LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484 (582)
T ss_dssp BCHHH-----HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred cCHHH-----HHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHH
Confidence 43321 34568888887432 22111 1111 123344566666666552 12389999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||||+ +.+|+++|+| |+.....+.+.+.++.+
T Consensus 485 q~qrl~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 528 (582)
T 3b60_A 485 QRQRIAIARAL-LRDSPILILDEATSALDTESERAIQAALDELQK 528 (582)
T ss_dssp HHHHHHHHHHH-HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HhCCCEEEEECccccCCHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 88999999999998864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-22 Score=209.47 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=120.4
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|++ ..+|+++||++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 340 i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY------------DVTSGQILIDGHNIKD 407 (578)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS------------CCSEEEEEETTEEGGG
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC------------CCCCcEEEECCEEhhh
Confidence 456889999964 46999999999 89999999999999999999999999 9999999999998866
Q ss_pred cccccCCCcceeeeEEEEeccCCC---cccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.+... ..+++++++|+... .+.++ |.... ..+...+..+....+|. ....|||||
T Consensus 408 ~~~~~-----~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq 482 (578)
T 4a82_A 408 FLTGS-----LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 482 (578)
T ss_dssp SCHHH-----HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred CCHHH-----HhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHH
Confidence 54321 34668888887432 22222 11111 12333444455555552 223799999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||++||||+ +.+|+++++| |+.....+.+.+.++.+
T Consensus 483 ~Qrv~lAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 525 (578)
T 4a82_A 483 KQRLSIARIF-LNNPPILILDEATSALDLESESIIQEALDVLSK 525 (578)
T ss_dssp HHHHHHHHHH-HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHcC
Confidence 9999999999 9999999999 88888899998887753
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-21 Score=205.17 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=118.9
Q ss_pred cCCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|. +..+|+++||++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~------------~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI------------DPERGRVEVDELDVRT 409 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS------------CCSEEEEEESSSBGGG
T ss_pred EEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------cCCCcEEEECCEEccc
Confidence 45688999994 457999999999 89999999999999999999999999 9999999999998876
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.+... ..+++++++|+...+ +.++ +.... ..+...+..+....+|. ....|||||
T Consensus 410 ~~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 410 VKLKD-----LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp BCHHH-----HHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred CCHHH-----HHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 55432 346788998874322 2222 11111 12223344444333332 113799999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|||++||||+ +.+|+++|+| |+.....+.+.+.++.
T Consensus 485 rQrv~lARal-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 526 (587)
T 3qf4_A 485 KQRLSIARAL-VKKPKVLILDDCTSSVDPITEKRILDGLKRYT 526 (587)
T ss_dssp HHHHHHHHHH-HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHhC
Confidence 9999999999 9999999999 8899999999988864
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.6e-21 Score=197.48 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=112.2
Q ss_pred eEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccC
Q 016339 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~ 217 (391)
.+.++|++ ..+..+++.+ +|++++|+||||||||||+++|+|+. +|++|+|.+++..++.+++...
T Consensus 274 ~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~~~~i~~~~q~~~ 340 (538)
T 3ozx_A 274 KIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI------------TADEGSVTPEKQILSYKPQRIF 340 (538)
T ss_dssp CEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCSBCCEESSCCCEEEECSSCC
T ss_pred ceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCeeeEeechhcc
Confidence 34555654 3355556677 89999999999999999999999999 9999999999888888777532
Q ss_pred CCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 218 RGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 218 ~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
.....+ .++... ...............+..+++..+.++.|. .|||||+||++||+|+ +.+|+++|+|
T Consensus 341 ~~~~~tv~~~l~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSGGq~QRv~iAraL-~~~p~lLlLDEPT 413 (538)
T 3ozx_A 341 PNYDGTVQQYLENA---SKDALSTSSWFFEEVTKRLNLHRLLESNVN---DLSGGELQKLYIAATL-AKEADLYVLDQPS 413 (538)
T ss_dssp CCCSSBHHHHHHHH---CSSTTCTTSHHHHHTTTTTTGGGCTTSBGG---GCCHHHHHHHHHHHHH-HSCCSEEEEESTT
T ss_pred cccCCCHHHHHHHh---hhhccchhHHHHHHHHHHcCCHHHhcCChh---hCCHHHHHHHHHHHHH-HcCCCEEEEeCCc
Confidence 211111 111110 011110111122344556777778888888 9999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~~ 311 (391)
|+.....++++|.++..+.
T Consensus 414 ~gLD~~~~~~i~~~l~~l~~~~ 435 (538)
T 3ozx_A 414 SYLDVEERYIVAKAIKRVTRER 435 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHhC
Confidence 8899999999999987653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-21 Score=186.58 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=100.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++ ...+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++| .++.++
T Consensus 41 l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g-~i~~v~ 105 (290)
T 2bbs_A 41 LSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL------------EPSEGKIKHSG-RISFCS 105 (290)
T ss_dssp -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS------------CEEEEEEECCS-CEEEEC
T ss_pred EEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECC-EEEEEe
Confidence 344556554 357899999999 89999999999999999999999999 99999999988 467777
Q ss_pred cccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhH--------HhhcCcccccccccccccccC
Q 016339 214 TKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI--------KEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 214 ~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~--------~~~LSgGq~qr~~iaralh~~ 284 (391)
+.+..++.+- .++. . .. .+ .......+..+++.+....+|.. ...|||||+||++||+|+ +.
T Consensus 106 Q~~~l~~~tv~enl~--~----~~-~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL-~~ 176 (290)
T 2bbs_A 106 QNSWIMPGTIKENII--G----VS-YD-EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV-YK 176 (290)
T ss_dssp SSCCCCSSBHHHHHH--T----TC-CC-HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHH-HS
T ss_pred CCCccCcccHHHHhh--C----cc-cc-hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHH-HC
Confidence 7654433211 2221 0 00 00 00011123334454444444421 138999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHH-HHHH
Q 016339 285 EPGCVVKG------DWERYQYYFQL-LDEI 307 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~l-l~el 307 (391)
+|+++|+| |+.....++++ +.++
T Consensus 177 ~p~lllLDEPts~LD~~~~~~i~~~ll~~~ 206 (290)
T 2bbs_A 177 DADLYLLDSPFGYLDVLTEKEIFESCVCKL 206 (290)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHCCCCC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence 99999999 88888888875 3444
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-21 Score=218.99 Aligned_cols=156 Identities=17% Similarity=0.253 Sum_probs=123.6
Q ss_pred cCCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.|++|+++|.+. .+|++|||.+ +|+++|||||||||||||+++|.|++ +|++|+|.+||.++.
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~------------~p~~G~I~iDG~di~ 1144 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY------------DTLGGEIFIDGSEIK 1144 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS------------CCSSSEEEETTEETT
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc------------cCCCCEEEECCEEhh
Confidence 4578999999543 5899999999 89999999999999999999999999 999999999999998
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-------cccchH----HHHhCChhHHhhhchhH--------HhhcC
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-------PGFNQP----SLLKVTKQSLAQTFPEI--------KEMLK 268 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-------pg~~~~----~l~~~~~~~l~~~~p~~--------~~~LS 268 (391)
.++... .++++++++|+. .+.+.+| +...+. .+...++.+....+|+- ...||
T Consensus 1145 ~i~~~~-----lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS 1219 (1321)
T 4f4c_A 1145 TLNPEH-----TRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS 1219 (1321)
T ss_dssp TBCHHH-----HHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSC
T ss_pred hCCHHH-----HHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccC
Confidence 876643 567799999983 3334333 333333 23445555555555542 23799
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||||||++||||+ +.+|+++|+| |++.-..+++.|+++.
T Consensus 1220 gGQrQriaiARAl-lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1220 GGQKQRIAIARAL-VRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHHHHHHHH-HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEeCccccCCHHHHHHHHHHHHHHc
Confidence 9999999999999 9999999999 8888888888776643
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-21 Score=216.83 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=122.9
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|.+ ..+|+++||.+ +|++++||||||||||||+++|.|++ +|++|+|.++|.++.
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~------------~~~~G~I~idG~~i~ 483 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY------------DVLKGKITIDGVDVR 483 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS------------CCSEEEEEETTEETT
T ss_pred EEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc------------ccccCcccCCCccch
Confidence 457899999953 46899999999 89999999999999999999999999 999999999999988
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-----cccchH----HHHhCChhHHhhhchhHH--------hhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQP----SLLKVTKQSLAQTFPEIK--------EMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~~p~~~--------~~LSgG 270 (391)
.++... .+.++++++|+. ++.+.++ |...+. .+...++.+....+|+-. ..||||
T Consensus 484 ~~~~~~-----lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGG 558 (1321)
T 4f4c_A 484 DINLEF-----LRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGG 558 (1321)
T ss_dssp TSCHHH-----HHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHH
T ss_pred hccHHH-----HhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHH
Confidence 776543 457789999873 3333333 333332 233445555555565422 379999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||||++||||+ ..+|+++|+| |++....+.+.|.++.+
T Consensus 559 QkQRiaiARAl-~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~ 602 (1321)
T 4f4c_A 559 QKQRIAIARAL-VRNPKILLLDEATSALDAESEGIVQQALDKAAK 602 (1321)
T ss_dssp HHHHHHHHHHH-TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-ccCCCEEEEecccccCCHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 67777788888877654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-19 Score=189.15 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=111.0
Q ss_pred eeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcc---------eecC
Q 016339 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK---------WFED 206 (391)
Q Consensus 138 ~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I---------~~~g 206 (391)
++++++|++. .++++++ .+ +|++++|+||||||||||+|+|+|+. .|++|++ .++|
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~------------~p~~G~~~~~~~~~~~~~~g 91 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL------------IPNLCGDNDSWDGVIRAFRG 91 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS------------CCCTTTTCCSHHHHHHHTTT
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCccCcchhhhHHhhCC
Confidence 5789999876 4899999 88 99999999999999999999999999 8899986 3455
Q ss_pred ccccccccccCCCcceeeeEEEEeccCCC-------ccc------CCcccchHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGG-------YLA------DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 207 ~~v~~v~~~~~~~~~ttr~i~~v~~~~~~-------~l~------Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
..+........ . ....++++++.... .+. +........+..+++..+.++.+. .|||||+|
T Consensus 92 ~~~~~~~~~~~-~--~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~---~LSgGekQ 165 (538)
T 1yqt_A 92 NELQNYFEKLK-N--GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQ---HLSGGELQ 165 (538)
T ss_dssp STHHHHHHHHH-T--TSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGG---GCCHHHHH
T ss_pred ccHHHHHHHHH-H--HhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChh---hCCHHHHH
Confidence 44322110000 0 01123333332110 000 111223445666777777788888 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.++|+++++.
T Consensus 166 Rv~iAraL-~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~ 207 (538)
T 1yqt_A 166 RVAIAAAL-LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE 207 (538)
T ss_dssp HHHHHHHH-HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 889999999999998753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-20 Score=209.21 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=119.1
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|++ ..+|+++||.+ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~------------~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY------------DPLDGMVSIDGQDIR 455 (1284)
T ss_dssp EEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS------------CCSEEEEEETTEEGG
T ss_pred EEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEHH
Confidence 457899999964 36999999999 89999999999999999999999999 999999999999887
Q ss_pred ccccccCCCcceeeeEEEEeccCCC---cccCC-----cccch----HHHHhCChhHHhhhchhH--------HhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFNQ----PSLLKVTKQSLAQTFPEI--------KEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~~--------~~~LSgG 270 (391)
..+... ..+++++++|+... .+.++ +.... ..+...+..+....+|.- ...||||
T Consensus 456 ~~~~~~-----~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 530 (1284)
T 3g5u_A 456 TINVRY-----LREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGG 530 (1284)
T ss_dssp GSCHHH-----HHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHH
T ss_pred hCCHHH-----HHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHH
Confidence 665432 34668999987432 22222 11111 122233444444445432 1279999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||||++||||+ +.+|+++|+| |++....+.+.+.++.
T Consensus 531 q~QriaiARal-~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~ 573 (1284)
T 3g5u_A 531 QKQRIAIARAL-VRNPKILLLDEATSALDTESEAVVQAALDKAR 573 (1284)
T ss_dssp HHHHHHHHHHH-HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999 9999999999 8888888888887754
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-19 Score=190.57 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=112.2
Q ss_pred eeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcc---------eecC
Q 016339 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK---------WFED 206 (391)
Q Consensus 138 ~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I---------~~~g 206 (391)
++++++|++. .++++++ .+ +|++++|+||||||||||+|+|+|+. .|++|++ .+.|
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll------------~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL------------IPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS------------CCCTTTTCCCHHHHHHHTTT
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC------------CCCCCccccccchhhheeCC
Confidence 6789999876 4899999 88 99999999999999999999999999 8999986 3455
Q ss_pred ccccccccccCCCcceeeeEEEEeccCC-------Ccc------cCCcccchHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGG-------GYL------ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 207 ~~v~~v~~~~~~~~~ttr~i~~v~~~~~-------~~l------~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
..+........ .....+.+.++... +.+ .+........+..+++..+.++.+. .|||||+|
T Consensus 162 ~~~~~~~~~~~---~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~---~LSGGekQ 235 (607)
T 3bk7_A 162 NELQNYFERLK---NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH---QLSGGELQ 235 (607)
T ss_dssp STHHHHHHHHH---HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGG---GCCHHHHH
T ss_pred Eehhhhhhhhh---hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChh---hCCHHHHH
Confidence 44422110000 00112233332210 010 0111233455667788888888888 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 236 RvaIAraL-~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~ 277 (607)
T 3bk7_A 236 RVAIAAAL-LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277 (607)
T ss_dssp HHHHHHHH-HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 899999999999998753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-19 Score=204.38 Aligned_cols=155 Identities=16% Similarity=0.286 Sum_probs=118.0
Q ss_pred CCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 136 GYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 136 g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
.+++++++|.+. .+|+++||.+ +|+++||+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 1032 ~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~------------~p~~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A 1032 QFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY------------DPMAGSVFLDGKEIKQ 1099 (1284)
T ss_dssp EEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS------------CCSEEEEESSSSCTTS
T ss_pred EEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECCEEccc
Confidence 356788889653 5899999999 89999999999999999999999999 9999999999998865
Q ss_pred cccccCCCcceeeeEEEEeccCC---CcccCC-----c--ccch----HHHHhCChhHHhhhchhH--------HhhcCc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADT-----P--GFNQ----PSLLKVTKQSLAQTFPEI--------KEMLKA 269 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~~l~Dt-----p--g~~~----~~l~~~~~~~l~~~~p~~--------~~~LSg 269 (391)
.+... ..+++++++|+.. +.+.++ + .... ..+...++.+....+|.- ...|||
T Consensus 1100 ~~~~~-----~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSg 1174 (1284)
T 3g5u_A 1100 LNVQW-----LRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174 (1284)
T ss_dssp SCHHH-----HTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCH
T ss_pred CCHHH-----HHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCH
Confidence 54321 3466889998742 222222 1 1111 122333444555555532 137999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|||||++|||++ +.+|+++|+| |+.....+.+.++++.
T Consensus 1175 Gq~Qrv~iARal-~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~ 1218 (1284)
T 3g5u_A 1175 GQKQRIAIARAL-VRQPHILLLDEATSALDTESEKVVQEALDKAR 1218 (1284)
T ss_dssp HHHHHHHHHHHH-HHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC
Confidence 999999999999 9999999999 8899999999887753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-19 Score=191.76 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=107.0
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
++++++|++. .++.+++.+ +|++++|+||||||||||+++|+|+. +|++|+|.+ ...++.+++..
T Consensus 361 ~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~------------~p~~G~I~~-~~~i~~v~Q~~ 426 (607)
T 3bk7_A 361 PRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE------------EPTEGKVEW-DLTVAYKPQYI 426 (607)
T ss_dssp CCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS------------CCSBSCCCC-CCCEEEECSSC
T ss_pred eceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEE-eeEEEEEecCc
Confidence 3455566543 566677777 89999999999999999999999999 999999987 34566666653
Q ss_pred CCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 217 GRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 217 ~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
......| ... +...... ...........+..+++.++.++.+. .|||||+||++||+|+ +.+|+++|+|
T Consensus 427 ~~~~~~tv~e~--~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSGGe~QRv~iAraL-~~~p~lLlLDEPt 499 (607)
T 3bk7_A 427 KAEYEGTVYEL--LSKIDSS-KLNSNFYKTELLKPLGIIDLYDRNVE---DLSGGELQRVAIAATL-LRDADIYLLDEPS 499 (607)
T ss_dssp CCCCSSBHHHH--HHHHHHH-HHHCHHHHHHTHHHHTCTTTTTSBGG---GCCHHHHHHHHHHHHH-TSCCSEEEEECTT
T ss_pred cCCCCCcHHHH--HHhhhcc-CCCHHHHHHHHHHHcCCchHhcCChh---hCCHHHHHHHHHHHHH-HhCCCEEEEeCCc
Confidence 3211111 000 0000000 00011112233455666667777787 9999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.++|.++..+
T Consensus 500 ~~LD~~~~~~l~~~l~~l~~~ 520 (607)
T 3bk7_A 500 AYLDVEQRLAVSRAIRHLMEK 520 (607)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999998654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-19 Score=188.09 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=105.6
Q ss_pred eEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccC
Q 016339 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~ 217 (391)
++.++|++ ..++.++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.+ ...++.+++...
T Consensus 292 ~l~~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~------------~p~~G~i~~-~~~i~~v~Q~~~ 357 (538)
T 1yqt_A 292 RLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE------------EPTEGKIEW-DLTVAYKPQYIK 357 (538)
T ss_dssp CEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS------------CCSBCCCCC-CCCEEEECSSCC
T ss_pred eEEEEECC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEE-CceEEEEecCCc
Confidence 44555654 2466667777 89999999999999999999999999 999999987 345666666432
Q ss_pred CCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-----
Q 016339 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG----- 292 (391)
Q Consensus 218 ~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD----- 292 (391)
.....|-.- .+.. ...............+..+++....++.|. .||||||||++||+++ +.+|+++|+|
T Consensus 358 ~~~~~tv~~-~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSGGe~qrv~lAraL-~~~p~lLlLDEPt~~ 431 (538)
T 1yqt_A 358 ADYEGTVYE-LLSK-IDASKLNSNFYKTELLKPLGIIDLYDREVN---ELSGGELQRVAIAATL-LRDADIYLLDEPSAY 431 (538)
T ss_dssp CCCSSBHHH-HHHH-HHHHHHTCHHHHHHTTTTTTCGGGTTSBGG---GCCHHHHHHHHHHHHH-TSCCSEEEEECTTTT
T ss_pred CCCCCcHHH-HHHh-hhccCCCHHHHHHHHHHHcCChhhhcCChh---hCCHHHHHHHHHHHHH-HhCCCEEEEeCCccc
Confidence 211111000 0000 000000001112233445566667777888 9999999999999999 9999999999
Q ss_pred -CHHHHHHHHHHHHHHHHH
Q 016339 293 -DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 -D~~~~~~~~~ll~el~~~ 310 (391)
|+.....++++|.++..+
T Consensus 432 LD~~~~~~i~~~l~~l~~~ 450 (538)
T 1yqt_A 432 LDVEQRLAVSRAIRHLMEK 450 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 899999999999998654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-18 Score=182.59 Aligned_cols=152 Identities=17% Similarity=0.153 Sum_probs=104.6
Q ss_pred EEEEcCC-ccchHHHhhcc-c-----CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 140 LFCSVES-KLGLDSLLQRL-R-----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 140 v~~s~~~-~~~L~~ls~~i-~-----Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.++|.+ ..++++++|.+ + |++++|+||||||||||+++|+|+. +|++|+. +....++.+
T Consensus 352 ~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~------------~p~~G~~-~~~~~i~~~ 418 (608)
T 3j16_B 352 RAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL------------KPDEGQD-IPKLNVSMK 418 (608)
T ss_dssp SCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS------------CCSBCCC-CCSCCEEEE
T ss_pred eeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC------------CCCCCcC-ccCCcEEEe
Confidence 3455654 34788899988 4 4889999999999999999999999 8888874 223344444
Q ss_pred ccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEe
Q 016339 213 STKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (391)
Q Consensus 213 ~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lll 291 (391)
++........+ .. .+....... ...+.+....+..+++.++.+..|. .|||||+||++||+|+ +.+|+++|+
T Consensus 419 ~q~~~~~~~~tv~e--~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~---~LSGGqkQRv~iAraL-~~~p~lLlL 491 (608)
T 3j16_B 419 PQKIAPKFPGTVRQ--LFFKKIRGQ-FLNPQFQTDVVKPLRIDDIIDQEVQ---HLSGGELQRVAIVLAL-GIPADIYLI 491 (608)
T ss_dssp CSSCCCCCCSBHHH--HHHHHCSST-TTSHHHHHHTHHHHTSTTTSSSBSS---SCCHHHHHHHHHHHHT-TSCCSEEEE
T ss_pred cccccccCCccHHH--HHHHHhhcc-cccHHHHHHHHHHcCChhhhcCChh---hCCHHHHHHHHHHHHH-HhCCCEEEE
Confidence 44321110001 00 000000000 0112223334556677777888888 9999999999999999 999999999
Q ss_pred c------CHHHHHHHHHHHHHHHHHH
Q 016339 292 G------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 292 D------D~~~~~~~~~ll~el~~~~ 311 (391)
| |+.....+.++|.++..+.
T Consensus 492 DEPT~gLD~~~~~~i~~ll~~l~~~~ 517 (608)
T 3j16_B 492 DEPSAYLDSEQRIICSKVIRRFILHN 517 (608)
T ss_dssp CCTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 9 8899999999999986543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-18 Score=180.70 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=102.5
Q ss_pred eeEEEEcCCcc-chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcce-----------e
Q 016339 138 EPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------F 204 (391)
Q Consensus 138 ~~v~~s~~~~~-~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~-----------~ 204 (391)
++++++|+... .++.++ .+ +|++++|+||||||||||+|+|+|+. +|++|+|. +
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll------------~P~~G~i~~~~~~~~~~~~~ 147 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQ------------KPNLGRFDDPPEWQEIIKYF 147 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS------------CCCTTTTCCSSCHHHHHHHT
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCC------------CCCCceEecccchhhhhhee
Confidence 35788887553 455555 34 89999999999999999999999999 99999983 3
Q ss_pred cCccccccccccCCCcceeeeE--EEEeccCC-------C---cc--------cCCcccchHHHHhCChhHHhhhchhHH
Q 016339 205 EDQRVGEVSTKSGRGKHTTRHV--SLLPLSGG-------G---YL--------ADTPGFNQPSLLKVTKQSLAQTFPEIK 264 (391)
Q Consensus 205 ~g~~v~~v~~~~~~~~~ttr~i--~~v~~~~~-------~---~l--------~Dtpg~~~~~l~~~~~~~l~~~~p~~~ 264 (391)
.|..+....... ....+ .+.++... + .+ ..........+..+++..+.++.+.
T Consensus 148 ~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-- 220 (608)
T 3j16_B 148 RGSELQNYFTKM-----LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIE-- 220 (608)
T ss_dssp TTSTHHHHHHHH-----HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTT--
T ss_pred cChhhhhhhhHH-----HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChH--
Confidence 333221111100 00000 11111100 0 00 0001122334556677777888888
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.+++++++.+
T Consensus 221 -~LSgGe~Qrv~iAraL-~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~ 270 (608)
T 3j16_B 221 -KLSGGELQRFAIGMSC-VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270 (608)
T ss_dssp -TCCHHHHHHHHHHHHH-HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT
T ss_pred -HCCHHHHHHHHHHHHH-HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999 9999999999 889999999999988654
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.2e-18 Score=174.99 Aligned_cols=136 Identities=14% Similarity=0.186 Sum_probs=95.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcc-----------eecCcccccccccc-CCCcceeee
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK-----------WFEDQRVGEVSTKS-GRGKHTTRH 225 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I-----------~~~g~~v~~v~~~~-~~~~~ttr~ 225 (391)
+|++++|+||||||||||+|+|+|++ .|++|+| .+.|.++....+.. .........
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~------------~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 91 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI------------IPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHK 91 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS------------CCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhc
Confidence 89999999999999999999999999 9999998 46665553322110 000001111
Q ss_pred EEEEeccCC---Ccc------cCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec----
Q 016339 226 VSLLPLSGG---GYL------ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG---- 292 (391)
Q Consensus 226 i~~v~~~~~---~~l------~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD---- 292 (391)
+.++.+... +.+ .+........+..+++..+.++.+. .|||||+||++||+|+ +.+|+++|+|
T Consensus 92 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~---~LSgGe~Qrv~iA~aL-~~~p~illlDEPts 167 (538)
T 3ozx_A 92 IQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDAN---ILSGGGLQRLLVAASL-LREADVYIFDQPSS 167 (538)
T ss_dssp CSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGG---GCCHHHHHHHHHHHHH-HSCCSEEEEESTTT
T ss_pred cchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChh---hCCHHHHHHHHHHHHH-HcCCCEEEEECCcc
Confidence 111111100 000 0112233445667777778888888 9999999999999999 9999999999
Q ss_pred --CHHHHHHHHHHHHHHHH
Q 016339 293 --DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 293 --D~~~~~~~~~ll~el~~ 309 (391)
|+.....+.++|.++++
T Consensus 168 ~LD~~~~~~l~~~l~~l~~ 186 (538)
T 3ozx_A 168 YLDVRERMNMAKAIRELLK 186 (538)
T ss_dssp TCCHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHHhC
Confidence 88899999999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-18 Score=186.34 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=51.5
Q ss_pred eeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 138 EPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 138 ~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
++++++|++ ..+|+++||.+ +|++++|+||||||||||+++|+|+. .|++|+|++++
T Consensus 675 ~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll------------~P~sG~I~~~~ 734 (986)
T 2iw3_A 675 TNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL------------LPTSGEVYTHE 734 (986)
T ss_dssp EEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS------------CCSEEEEEECT
T ss_pred EeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEEcC
Confidence 456778864 56899999999 99999999999999999999999999 99999999875
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-17 Score=154.87 Aligned_cols=142 Identities=23% Similarity=0.324 Sum_probs=107.5
Q ss_pred cccccccccceeEEEEEecCCCCCHH-HHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCc
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~-~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~ 147 (391)
..+..++|+|.++.|+++..|..... .++ ++ ++++++|+||+||++++..+.|.+.+++.|++. .+|..++
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~ 85 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS------RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGE 85 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTS
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCC
Confidence 34668899999999999998855422 344 33 899999999999999887888999888889987 8999999
Q ss_pred cchHHHhhcccCC--EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 148 LGLDSLLQRLRDQ--TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 148 ~~L~~ls~~i~Ge--~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
.+++.+.-.+... .++|+|.||+|||||+|.|.|... . .++. .++ +|+.
T Consensus 86 ~gi~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~------------~----------~~~~---~~g----~T~~ 136 (262)
T 3cnl_A 86 PRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRA------------S----------SVGA---QPG----ITKG 136 (262)
T ss_dssp CHHHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC---------------------------------------CC
T ss_pred cCHHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcccc------------c----------ccCC---CCC----Cccc
Confidence 9999988888664 899999999999999999998761 1 1111 112 4444
Q ss_pred EEEEeccCCCcccCCcccchHH
Q 016339 226 VSLLPLSGGGYLADTPGFNQPS 247 (391)
Q Consensus 226 i~~v~~~~~~~l~Dtpg~~~~~ 247 (391)
...+....+..+.||||+..+.
T Consensus 137 ~~~~~~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 137 IQWFSLENGVKILDTPGILYKN 158 (262)
T ss_dssp SCEEECTTSCEEESSCEECCCC
T ss_pred eEEEEeCCCEEEEECCCcccCc
Confidence 4455555566799999987653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-17 Score=174.60 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=44.9
Q ss_pred hhhchhHHhhcCcccccccccccccccCCCc--EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 257 ~~~~p~~~~~LSgGq~qr~~iaralh~~eP~--~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+++++. .|||||+||++||||+ +.+|+ ++|+| |+.....++++|.+++..
T Consensus 196 ~~~~~~---~LSGGe~QRv~iArAL-~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~ 253 (670)
T 3ux8_A 196 LSRSAG---TLSGGEAQRIRLATQI-GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL 253 (670)
T ss_dssp TTCBGG---GSCHHHHHHHHHHHHH-HTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT
T ss_pred hcCCcc---cCCHHHHHHHHHHHHH-hhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc
Confidence 456677 9999999999999999 99988 99999 889999999999999754
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-16 Score=150.58 Aligned_cols=143 Identities=24% Similarity=0.351 Sum_probs=103.6
Q ss_pred ccccccccceeEEEEEecCCCCCH-HHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCcc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~-~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~ 148 (391)
....++++|.++.|+.+..|.... ..+++++ .+++.++|+||+||++++..+.|.+.+.+.|++.+.+|..++.
T Consensus 17 ~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~ 91 (282)
T 1puj_A 17 VTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQ 91 (282)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCT
T ss_pred HHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcc
Confidence 345688999999999999886553 4678776 5899999999999999887888988888889999999988777
Q ss_pred chHHHhhcc------------------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 149 GLDSLLQRL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 149 ~L~~ls~~i------------------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+++.+.-.+ .+-.++|+|.+|||||||+|.|.|... .
T Consensus 92 gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~-------------------------~ 146 (282)
T 1puj_A 92 GLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNI-------------------------A 146 (282)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCC-------------------------C
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCce-------------------------e
Confidence 766554322 123699999999999999999998751 1
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccCCcccchH
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~ 246 (391)
.++..++ +|++...+.......+.||||+..+
T Consensus 147 ~~~~~~g----~T~~~~~~~~~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 147 KTGDRPG----ITTSQQWVKVGKELELLDTPGILWP 178 (282)
T ss_dssp ----------------CCEEETTTEEEEECCCCCCS
T ss_pred ecCCCCC----eeeeeEEEEeCCCEEEEECcCcCCC
Confidence 1222222 5555555555555679999998754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-16 Score=171.51 Aligned_cols=143 Identities=22% Similarity=0.225 Sum_probs=96.3
Q ss_pred eEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc-
Q 016339 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS- 216 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~- 216 (391)
+++++|++..+|+++||.+ +|++++|+||||||||||+++|+|-.. ++ .+..+.+ .+..+++..
T Consensus 440 ~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i-----~g----~~~~~~~-----~~~~v~q~~~ 505 (986)
T 2iw3_A 440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV-----DG----FPTQEEC-----RTVYVEHDID 505 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS-----TT----CCCTTTS-----CEEETTCCCC
T ss_pred eEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CC----Cccccce-----eEEEEccccc
Confidence 4788899889999999999 999999999999999999999995220 00 0111110 112222211
Q ss_pred CCCccee--eeEEEEeccCCCcccCCcccchHHHHhCCh-hHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-
Q 016339 217 GRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG- 292 (391)
Q Consensus 217 ~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~-~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD- 292 (391)
......| .++.+ ...+ ........+..+++ ..+.+..+. .|||||+||++||+++ +.+|+++|+|
T Consensus 506 ~~~~~ltv~e~l~~---~~~~----~~~~v~~~L~~lgL~~~~~~~~~~---~LSGGqkQRvaLArAL-~~~P~lLLLDE 574 (986)
T 2iw3_A 506 GTHSDTSVLDFVFE---SGVG----TKEAIKDKLIEFGFTDEMIAMPIS---ALSGGWKMKLALARAV-LRNADILLLDE 574 (986)
T ss_dssp CCCTTSBHHHHHHT---TCSS----CHHHHHHHHHHTTCCHHHHHSBGG---GCCHHHHHHHHHHHHH-HTTCSEEEEES
T ss_pred ccccCCcHHHHHHH---hhcC----HHHHHHHHHHHcCCChhhhcCCcc---cCCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 1111111 11100 0000 01122334666777 467778888 9999999999999999 9999999999
Q ss_pred -----CHHHHHHHHHHHHH
Q 016339 293 -----DWERYQYYFQLLDE 306 (391)
Q Consensus 293 -----D~~~~~~~~~ll~e 306 (391)
|+.....+.++|.+
T Consensus 575 PTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 575 PTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp TTTTCCHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHh
Confidence 88999999988877
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-15 Score=142.64 Aligned_cols=105 Identities=21% Similarity=0.329 Sum_probs=61.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCC----Cc
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG----GY 236 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~----~~ 236 (391)
+++|+||||||||||||+|+|+. .|++|+|.++|.++... . ..+.++++++..+ ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~------------~~~~G~i~~~g~~i~~~---~-----~~~~i~~v~q~~~~~~~lt 63 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ------------VSRKASSWNREEKIPKT---V-----EIKAIGHVIEEGGVKMKLT 63 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------------C------------CCCC---C-----SCCEEEESCC----CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC------------CCCCCccccCCcccCcc---e-----eeeeeEEEeecCCCcCCce
Confidence 58999999999999999999998 89999999998765211 0 1245666666533 23
Q ss_pred ccCCcccchH--------HHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec
Q 016339 237 LADTPGFNQP--------SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (391)
Q Consensus 237 l~Dtpg~~~~--------~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD 292 (391)
+.|++++... .+..+....+.+.+++ +|||||+||+++||++ +. ++++|
T Consensus 64 v~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~---~LS~G~~qrv~iaRal-~~---lllld 120 (270)
T 3sop_A 64 VIDTPGFGDQINNENCWEPIEKYINEQYEKFLKE---EVNIARKKRIPDTRVH-CC---LYFIS 120 (270)
T ss_dssp EECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHH---HSCTTCCSSCCCCSCC-EE---EEEEC
T ss_pred EEechhhhhhcccHHHHHHHHHHHHHHHHhhhHH---hcCcccchhhhhheee-ee---eEEEe
Confidence 6777766421 1222222344555565 9999999999999997 53 77777
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-15 Score=152.13 Aligned_cols=130 Identities=17% Similarity=0.111 Sum_probs=91.2
Q ss_pred ccchHHHhhcc-cCC--------------------EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec
Q 016339 147 KLGLDSLLQRL-RDQ--------------------TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge--------------------~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~ 205 (391)
..++++|++.+ +|+ +++|+||||||||||||+|+|+. .|++|+|.++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~------------~p~~GsI~~~ 103 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG------------NEEEGAAKTG 103 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC------------TTSTTSCCCC
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC------------CccCceEEEC
Confidence 46899999999 899 99999999999999999999999 9999999998
Q ss_pred CccccccccccCCCcceeeeEEEEeccC---CCcccCCcccc------hHHHHhCChhHHhhhchhHHhhcCcc--cccc
Q 016339 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFN------QPSLLKVTKQSLAQTFPEIKEMLKAN--EPAK 274 (391)
Q Consensus 206 g~~v~~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dtpg~~------~~~l~~~~~~~l~~~~p~~~~~LSgG--q~qr 274 (391)
|.++.. . .++++.. ...+.|+|++. ...+..+++.+. +.++ .+|+| |+||
T Consensus 104 g~~~t~-------------~-~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~-~~~~----~lS~G~~~kqr 164 (413)
T 1tq4_A 104 VVEVTM-------------E-RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY-DFFI----IISATRFKKND 164 (413)
T ss_dssp C----C-------------C-CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC-SEEE----EEESSCCCHHH
T ss_pred Ceecce-------------e-EEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc-CCeE----EeCCCCccHHH
Confidence 865421 0 1122221 22345666543 223334443322 1222 38999 9999
Q ss_pred cccccccccC----------CCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLG----------EPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 275 ~~iaralh~~----------eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+++|+++ .+ +|+++++| |+.....+++++.++.
T Consensus 165 v~la~aL-~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 165 IDIAKAI-SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp HHHHHHH-HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHH-HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 9999999 77 77777777 5666777888888875
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-15 Score=138.47 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=76.8
Q ss_pred EEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 142 ~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
++|++..+|++| -+|++++|+||||||||||+++|+|+ .|++|+|.. ..+.. +.. .
T Consensus 8 k~~g~~~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl-------------~p~~G~I~~--~~~~~-~~~-----~ 63 (208)
T 3b85_A 8 KTLGQKHYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ-------------ALQSKQVSR--IILTR-PAV-----E 63 (208)
T ss_dssp CSHHHHHHHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH-------------HHHTTSCSE--EEEEE-CSC-----C
T ss_pred CCHhHHHHHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC-------------CCcCCeeee--EEecC-Cch-----h
Confidence 467777788886 37999999999999999999999997 367788842 11211 100 0
Q ss_pred eeeeEEEEeccCCCcccCCc-ccchH---HHHh-CChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCHHH
Q 016339 222 TTRHVSLLPLSGGGYLADTP-GFNQP---SLLK-VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWER 296 (391)
Q Consensus 222 ttr~i~~v~~~~~~~l~Dtp-g~~~~---~l~~-~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~~~ 296 (391)
..+.++++++.. .++- .+... .+.. .....+ . ++-.. +.||+||++||+|+ +.+|+++|+|+|..
T Consensus 64 ~~~~ig~v~q~~----~enl~~~~~~~~~~~~~~~~~~~~-~---~~l~~-glGq~qrv~lAraL-~~~p~lllLDEPts 133 (208)
T 3b85_A 64 AGEKLGFLPGTL----NEKIDPYLRPLHDALRDMVEPEVI-P---KLMEA-GIVEVAPLAYMRGR-TLNDAFVILDEAQN 133 (208)
T ss_dssp TTCCCCSSCC----------CTTTHHHHHHHTTTSCTTHH-H---HHHHT-TSEEEEEGGGGTTC-CBCSEEEEECSGGG
T ss_pred hhcceEEecCCH----HHHHHHHHHHHHHHHHHhccHHHH-H---HHHHh-CCchHHHHHHHHHH-hcCCCEEEEeCCcc
Confidence 123455555542 1111 01000 0111 111111 1 11112 44999999999999 99999999996653
Q ss_pred --HHHHHHHHHH
Q 016339 297 --YQYYFQLLDE 306 (391)
Q Consensus 297 --~~~~~~ll~e 306 (391)
...+.++|.+
T Consensus 134 ~~~~~l~~~l~~ 145 (208)
T 3b85_A 134 TTPAQMKMFLTR 145 (208)
T ss_dssp CCHHHHHHHHTT
T ss_pred ccHHHHHHHHHH
Confidence 3344444444
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-15 Score=154.29 Aligned_cols=133 Identities=15% Similarity=0.056 Sum_probs=85.5
Q ss_pred HHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCC-c-ceecCc---cccccccccCCCcce---
Q 016339 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-S-KWFEDQ---RVGEVSTKSGRGKHT--- 222 (391)
Q Consensus 152 ~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G-~-I~~~g~---~v~~v~~~~~~~~~t--- 222 (391)
++++.+ +|++++|+||||||||||+++|+|+. .|++| + |++++. .++.+++......+.
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~------------~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~ 197 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA------------LKFNAYQPLYINLDPQQPIFTVPGCISATPISDIL 197 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT------------HHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc------------cccCCceeEEEcCCccCCeeeeccchhhccccccc
Confidence 799999 89999999999999999999999999 89999 8 999872 233444432111100
Q ss_pred e--eeEEEEeccC-CCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccc--cccCCCcE----EEecC
Q 016339 223 T--RHVSLLPLSG-GGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC--LHLGEPGC----VVKGD 293 (391)
Q Consensus 223 t--r~i~~v~~~~-~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara--lh~~eP~~----lllDD 293 (391)
+ .++ + .... .+ ..........+..+++....+ +. .|||||+||+++|++ + +.+|++ +|+|.
T Consensus 198 tv~eni-~-~~~~~~~--~~~~~~~~~ll~~~gl~~~~~--~~---~LSgGq~qrlalAra~rL-~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 198 DAQLPT-W-GQSLTSG--ATLLHNKQPMVKNFGLERINE--NK---DLYLECISQLGQVVGQRL-HLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTTCTT-C-SCBCBSS--CCSSCCBCCEECCCCSSSGGG--CH---HHHHHHHHHHHHHHHHHH-HHCHHHHHSCEEEEC
T ss_pred chhhhh-c-ccccccC--cchHHHHHHHHHHhCCCcccc--hh---hhhHHHHHHHHHHHHHHh-ccCcccCcceEEEeC
Confidence 0 011 0 0000 00 000011222334455554444 55 899999999999999 9 999999 99995
Q ss_pred -HHH-----HHHHHHHHHH
Q 016339 294 -WER-----YQYYFQLLDE 306 (391)
Q Consensus 294 -~~~-----~~~~~~ll~e 306 (391)
|.. +..+.+++++
T Consensus 268 pPts~LD~~~~~l~~l~~~ 286 (460)
T 2npi_A 268 PSISQLDENLAELHHIIEK 286 (460)
T ss_dssp CCGGGSCSSCHHHHHHHHH
T ss_pred CcccccChhHHHHHHHHHH
Confidence 322 4445555444
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-15 Score=160.74 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=43.2
Q ss_pred hhchhHHhhcCcccccccccccccccCCC---cEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEP---GCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 258 ~~~p~~~~~LSgGq~qr~~iaralh~~eP---~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+.+|. .|||||+||++||||+ +.+| +++|+| |+.....+++++.++++.
T Consensus 538 ~~~~~---~LSgG~~qrv~iAraL-~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~ 595 (670)
T 3ux8_A 538 GQPAT---TLSGGEAQRVKLAAEL-HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595 (670)
T ss_dssp TCCGG---GCCHHHHHHHHHHHHH-HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCch---hCCHHHHHHHHHHHHH-hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 45666 9999999999999999 8776 599999 889999999999999754
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.6e-15 Score=142.97 Aligned_cols=126 Identities=17% Similarity=0.121 Sum_probs=80.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|+ ..+|+++++.+ +|++++|+||||||||||+++|+|++ +|+|.. .++
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---------------~G~I~~------~v~ 159 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---------------GGSVLS------FAN 159 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---------------TCEEEC------GGG
T ss_pred EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---------------CceEEE------Eec
Confidence 34567777887 67999999999 89999999999999999999999985 455533 233
Q ss_pred cccCCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEe
Q 016339 214 TKSGRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (391)
Q Consensus 214 ~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lll 291 (391)
+.+..+..+. .++.+.+.. +.. ....+..+ +....+ + ..|||||||| |||+ +.+|+++|.
T Consensus 160 q~~~lf~~ti~~~ni~~~~~~-------~~~-~~~~i~~~-L~~gld--g---~~LSgGqkQR---ARAl-l~~p~iLlT 221 (305)
T 2v9p_A 160 HKSHFWLASLADTRAALVDDA-------THA-CWRYFDTY-LRNALD--G---YPVSIDRKHK---AAVQ-IKAPPLLVT 221 (305)
T ss_dssp TTSGGGGGGGTTCSCEEEEEE-------CHH-HHHHHHHT-TTGGGG--T---CCEECCCSSC---CCCE-ECCCCEEEE
T ss_pred CccccccccHHHHhhccCccc-------cHH-HHHHHHHH-hHccCC--c---cCcCHHHHHH---HHHH-hCCCCEEEE
Confidence 3222222221 244443210 000 11112221 111112 3 3899999999 9999 999999995
Q ss_pred c--CHHHHHHH
Q 016339 292 G--DWERYQYY 300 (391)
Q Consensus 292 D--D~~~~~~~ 300 (391)
- |+.....+
T Consensus 222 s~LD~~~~~~i 232 (305)
T 2v9p_A 222 SNIDVQAEDRY 232 (305)
T ss_dssp ESSCSTTCGGG
T ss_pred CCCCHHHHHHH
Confidence 3 55444443
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-14 Score=140.75 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=82.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++++ | ..+++++++.+ +|++++|+||||||||||+|+|+|++ +|++|.|.++|...-..+.
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~------------~~~~g~i~i~~~~e~~~~~- 214 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI------------PKEERIISIEDTEEIVFKH- 214 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS------------CTTSCEEEEESSCCCCCSS-
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC------------cCCCcEEEECCeecccccc-
Confidence 445444 5 56899999999 89999999999999999999999999 8999999998864211110
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCHH
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~~ 295 (391)
....+++++ .|||+||.++|+|+ ..+|+++++|++.
T Consensus 215 ------~~~~i~~~~-------------------------------------ggg~~~r~~la~aL-~~~p~ilildE~~ 250 (330)
T 2pt7_A 215 ------HKNYTQLFF-------------------------------------GGNITSADCLKSCL-RMRPDRIILGELR 250 (330)
T ss_dssp ------CSSEEEEEC-------------------------------------BTTBCHHHHHHHHT-TSCCSEEEECCCC
T ss_pred ------chhEEEEEe-------------------------------------CCChhHHHHHHHHh-hhCCCEEEEcCCC
Confidence 112233321 08999999999999 9999999999554
Q ss_pred HHHHHHHHHHHHH
Q 016339 296 RYQYYFQLLDEIR 308 (391)
Q Consensus 296 ~~~~~~~ll~el~ 308 (391)
. ....+++..+.
T Consensus 251 ~-~e~~~~l~~~~ 262 (330)
T 2pt7_A 251 S-SEAYDFYNVLC 262 (330)
T ss_dssp S-THHHHHHHHHH
T ss_pred h-HHHHHHHHHHh
Confidence 3 23445555543
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-15 Score=131.04 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=26.3
Q ss_pred HHhhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 152 ~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
+|||.+ +|++++|+||||||||||++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 467788 899999999999999999997654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=135.50 Aligned_cols=145 Identities=23% Similarity=0.285 Sum_probs=103.4
Q ss_pred cccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCH----HHHHHHHH-HHHhcCC---eeEEEE
Q 016339 73 PVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKS-RLHTWGY---EPLFCS 143 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~----~~~~~~~~-~~~~~g~---~~v~~s 143 (391)
...+.|.++.|+.+..|..+ ...+.+++ .++++++|+||+||.+. +....|.. .++..|+ +.+.+|
T Consensus 68 ~~~~~~lil~VvD~~d~~~s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 142 (369)
T 3ec1_A 68 IGESKALVVNIVDIFDFNGSFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVS 142 (369)
T ss_dssp HHHHCCEEEEEEETTCSGGGCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECB
T ss_pred hhccCcEEEEEEECCCCCCchhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 34577888899988776422 12345553 37899999999999875 34556654 4677887 678889
Q ss_pred cCCccchHHHhhcc----cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCC
Q 016339 144 VESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (391)
Q Consensus 144 ~~~~~~L~~ls~~i----~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~ 219 (391)
..++.+++.+...+ ++..++++|++|+|||||+|+|.+... .. .....++..
T Consensus 143 A~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~~~------------~~--------~~~~~~~~~---- 198 (369)
T 3ec1_A 143 AAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEAT------------GK--------GNVITTSYF---- 198 (369)
T ss_dssp TTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHHHH------------HT--------TCCCEEEEC----
T ss_pred CCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhhcc------------CC--------ccceeecCC----
Confidence 99999988887766 688999999999999999999998630 00 001122222
Q ss_pred cceeeeEEEEeccCCCcccCCcccchH
Q 016339 220 KHTTRHVSLLPLSGGGYLADTPGFNQP 246 (391)
Q Consensus 220 ~~ttr~i~~v~~~~~~~l~Dtpg~~~~ 246 (391)
+++|+....+....+..++||||+...
T Consensus 199 ~gtT~~~~~~~~~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 199 PGTTLDMIEIPLESGATLYDTPGIINH 225 (369)
T ss_dssp TTSSCEEEEEECSTTCEEEECCSCCCC
T ss_pred CCeEEeeEEEEeCCCeEEEeCCCcCcH
Confidence 337777777777666789999998754
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-14 Score=144.35 Aligned_cols=41 Identities=10% Similarity=-0.048 Sum_probs=38.6
Q ss_pred cCcccccccccccccccCCC--cEEEec------CHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEP--GCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP--~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|||||+||++||+++ +.+| +++|+| |+.....+.++|.++.
T Consensus 296 lSgGe~qrl~lA~~l-~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~ 344 (415)
T 4aby_A 296 ASGGELSRVMLAVST-VLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA 344 (415)
T ss_dssp SCHHHHHHHHHHHHH-HHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT
T ss_pred cCHhHHHHHHHHHHH-HhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 799999999999999 9999 999999 7889999999999986
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.5e-15 Score=135.46 Aligned_cols=37 Identities=32% Similarity=0.301 Sum_probs=25.1
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
...|++|||.+ +|++++|+||||||||||+++|+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45799999999 89999999999999999999999976
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-13 Score=134.54 Aligned_cols=160 Identities=23% Similarity=0.239 Sum_probs=106.0
Q ss_pred cccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHH----HHHHHHH-HHHhcCC---eeEEEE
Q 016339 73 PVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLFCS 143 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~----~~~~~~~-~~~~~g~---~~v~~s 143 (391)
...+.|.+++|+.+..|... ...+.+++ .++++++|+||+||.+.. ....|.. .++..|+ +.+.+|
T Consensus 66 i~~~~~~il~VvD~~d~~~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 140 (368)
T 3h2y_A 66 IGKSDALVVKIVDIFDFNGSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLIS 140 (368)
T ss_dssp HHHSCCEEEEEEETTSHHHHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred HhccCcEEEEEEECCCCcccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEe
Confidence 44577899999998765211 01233332 478999999999998753 4556643 3567888 678889
Q ss_pred cCCccchHHHhhcc----cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCC
Q 016339 144 VESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (391)
Q Consensus 144 ~~~~~~L~~ls~~i----~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~ 219 (391)
..++.+++.+...+ ++..++++|.+|+|||||+|.|.|.... .. .....++ ..
T Consensus 141 A~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKStliN~L~~~~~~-----------~~--------~~~~~~~----~~ 197 (368)
T 3h2y_A 141 AAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSD-----------ET--------ENVITTS----HF 197 (368)
T ss_dssp TTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHHHHTT-----------SC--------SSCCEEE----CC
T ss_pred CCCCcCHHHHHhhhhhhcccceEEEecCCCCChhHHHHHHHhhhcc-----------cc--------ccceecC----CC
Confidence 99999998887766 6889999999999999999999986410 00 0011222 33
Q ss_pred cceeeeEEEEeccCCCcccCCcccchHH--HHhCChhHHhhhc
Q 016339 220 KHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTF 260 (391)
Q Consensus 220 ~~ttr~i~~v~~~~~~~l~Dtpg~~~~~--l~~~~~~~l~~~~ 260 (391)
+++|++...+....+..++||||+.... ...+..+.+...+
T Consensus 198 ~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 240 (368)
T 3h2y_A 198 PGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLIT 240 (368)
T ss_dssp C----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred CCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence 4478777777777677899999997543 2234444444433
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.4e-15 Score=144.73 Aligned_cols=109 Identities=13% Similarity=0.031 Sum_probs=67.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCccee-eeEEEEeccCCCc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT-RHVSLLPLSGGGY 236 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~tt-r~i~~v~~~~~~~ 236 (391)
+|++++|+||||||||||+++|+|++ .|+.|. ..++.+++.....+++. .++.++ .
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll------------~~~~G~-----~~v~~v~qd~~~~~~t~~e~~~~~--~---- 145 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL------------ARWDHH-----PRVDLVTTDGFLYPNAELQRRNLM--H---- 145 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH------------HTSTTC-----CCEEEEEGGGGBCCHHHHHHTTCT--T----
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc------------cccCCC-----CeEEEEecCccCCcccHHHHHHHH--H----
Confidence 79999999999999999999999998 665553 23445555433222211 111110 0
Q ss_pred ccCCcccc-----hHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCH
Q 016339 237 LADTPGFN-----QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (391)
Q Consensus 237 l~Dtpg~~-----~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~ 294 (391)
..+.|... ...+..++ ....+..+. .|||||+||+++|+++ +.+|+++|+|.|
T Consensus 146 ~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~---~lS~G~~qRv~~a~al-~~~p~ilIlDep 203 (312)
T 3aez_A 146 RKGFPESYNRRALMRFVTSVK-SGSDYACAP---VYSHLHYDIIPGAEQV-VRHPDILILEGL 203 (312)
T ss_dssp CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEE---EEETTTTEEEEEEEEE-ECSCSEEEEECT
T ss_pred hcCCChHHHHHHHHHHHHHhC-CCcccCCcc---cCChhhhhhhhhHHHh-ccCCCEEEECCc
Confidence 01112111 11122222 111223333 8999999999999999 999999999944
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.7e-14 Score=125.95 Aligned_cols=113 Identities=15% Similarity=0.165 Sum_probs=66.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dt 240 (391)
.++|+||||||||||+++|+|++ . +.++|........ +...+.++++++.... .++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l------------~-----i~~~g~~~~~~~~-----~~~~~~ig~~~~~~~~--~~~ 57 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL------------G-----KRAIGFWTEEVRD-----PETKKRTGFRIITTEG--KKK 57 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH------------G-----GGEEEEEEEEEC-----------CCEEEEEETTC--CEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------------C-----CcCCCEEhhhhcc-----ccccceeEEEeecCcH--HHH
Confidence 68999999999999999999987 2 3444433211110 0012334555544211 000
Q ss_pred cccchHHHHhCChhHHhhhchhHHhhcCcccccccccccc-----cccCCCcEEEecC--------HHHHHHHHHHHH
Q 016339 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC-----LHLGEPGCVVKGD--------WERYQYYFQLLD 305 (391)
Q Consensus 241 pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara-----lh~~eP~~lllDD--------~~~~~~~~~ll~ 305 (391)
. +.. + ........+.++. .|||||+||++||++ + ..+|+++|+|+ +.....+.+++.
T Consensus 58 ~-~~~--~-~~~~~~~~~~~~~---~lSgG~~qr~~la~aa~~~~l-~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 58 I-FSS--K-FFTSKKLVGSYGV---NVQYFEELAIPILERAYREAK-KDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp E-EEE--T-TCCCSSEETTEEE---CHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred H-HHh--h-cCCcccccccccc---CcCHHHHHHHHHHhhcccccc-ccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 0 000 0 0000123445555 899999999999996 8 99999999994 445555555543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.6e-13 Score=129.61 Aligned_cols=123 Identities=20% Similarity=0.098 Sum_probs=51.9
Q ss_pred eeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcC-CCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS-PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl-~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
.+++++|++..++++++|.+ +|+||||||||||||+|.|. . .|++| +.++|.++....
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I-----~lvG~nG~GKSTLl~~L~g~~~------------~~~~g-i~~~g~~~~~t~--- 60 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL-----MVVGESGLGKSTLINSLFLTDL------------YPERV-ISGAAEKIERTV--- 60 (301)
T ss_dssp ----------------CEEE-----EEEEETTSSHHHHHHHHHC------------------------------------
T ss_pred CCCcceECCEEEEcCCCEEE-----EEECCCCCCHHHHHHHHhCCCc------------cCCCC-cccCCcccCCcc---
Confidence 35677888889999999877 99999999999999999997 5 77888 776665442110
Q ss_pred CCCcceeeeEEEEeccCC----CcccCCcccchHHH--HhC-C----hhHHhhhchhHHhhcCcccccccccccccccCC
Q 016339 217 GRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSL--LKV-T----KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (391)
Q Consensus 217 ~~~~~ttr~i~~v~~~~~----~~l~Dtpg~~~~~l--~~~-~----~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~e 285 (391)
. ...+.++++..+ ..+.|++|+....- ... . +.+..+.++. .+|||++||+.+|+++ +
T Consensus 61 ~-----~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~---~~sgg~rqrv~~ara~-~-- 129 (301)
T 2qnr_A 61 Q-----IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLH---DESGLNRRHIIDNRVH-C-- 129 (301)
T ss_dssp ---------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHH---HHTSSCCTTCCCCCCC-E--
T ss_pred e-----EeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH---HhCHHhhhhhhhhhhh-h--
Confidence 0 112233333221 23667777632110 000 0 1122234444 8999999999999987 3
Q ss_pred CcEEEecCH
Q 016339 286 PGCVVKGDW 294 (391)
Q Consensus 286 P~~lllDD~ 294 (391)
|+++|+|
T Consensus 130 --ll~ldeP 136 (301)
T 2qnr_A 130 --CFYFISP 136 (301)
T ss_dssp --EEEEECS
T ss_pred --eeeeecC
Confidence 7777743
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-12 Score=127.98 Aligned_cols=110 Identities=28% Similarity=0.379 Sum_probs=79.8
Q ss_pred ccccccccceeEEEEEecCCCC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCCc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESK 147 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~-~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~~ 147 (391)
....+.++|.+++|+.+..+.. ....+.++| +..++++++|+||+|+........+ ..+.++|+ +.+.+|..++
T Consensus 75 ~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l---~~~~~p~ilv~NK~D~~~~~~~~~~-~~~~~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 75 TLNMIREADLVLFVVDGKRGITKEDESLADFL---RKSTVDTILVANKAENLREFEREVK-PELYSLGFGEPIPVSAEHN 150 (439)
T ss_dssp HHHHHTTCSEEEEEEETTTCCCHHHHHHHHHH---HHHTCCEEEEEESCCSHHHHHHHTH-HHHGGGSSCSCEECBTTTT
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCCEEEEEeCCCCccccHHHHH-HHHHhcCCCCEEEEeccCC
Confidence 3456789999999999876422 223455555 4468999999999999643111111 34557888 7889999998
Q ss_pred cchHHHhhcc-------c-C----------CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSLLQRL-------R-D----------QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~ls~~i-------~-G----------e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++++-..+ . . -.++|+|+||||||||+|.|+|..
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 8887765443 1 1 179999999999999999999985
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=7e-14 Score=135.63 Aligned_cols=124 Identities=14% Similarity=0.125 Sum_probs=80.0
Q ss_pred hHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcce-eeeEE
Q 016339 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT-TRHVS 227 (391)
Q Consensus 150 L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~t-tr~i~ 227 (391)
++.+++.+ +|++++|+||||||||||++.|+|++ .|++|+|.+.+.++...........+. ..++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l------------~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~ 157 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL------------KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE 157 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH------------HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH------------HHcCCeEEEEeecccchhHHHHHHHHHHhcCce
Confidence 34577777 79999999999999999999999998 889999999987764322100000001 13466
Q ss_pred EEeccCC-Cc----ccCCc------ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCc--EEEec
Q 016339 228 LLPLSGG-GY----LADTP------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--CVVKG 292 (391)
Q Consensus 228 ~v~~~~~-~~----l~Dtp------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~--~lllD 292 (391)
++++..+ .. +.++- +.....+..+++....+.++. +|| +||+++|+++ ..+|. ++|+|
T Consensus 158 ~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~---eLS---kqr~~iaral-~~~P~e~lLvLD 228 (302)
T 3b9q_A 158 IVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLME---ELI---ACKKAVGKIV-SGAPNEILLVLD 228 (302)
T ss_dssp EECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHH---HHH---HHHHHHHTTS-TTCCSEEEEEEE
T ss_pred EEEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHH---HHH---HHHHHHHHhh-ccCCCeeEEEEe
Confidence 6666533 21 00110 000011222333333445555 888 8999999999 99999 99999
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=136.08 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=39.6
Q ss_pred hcCcccccccccccccccCC---CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGE---PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~e---P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||++| +.+ |.++|+| |+.....++++|.++...
T Consensus 805 ~LSGGErQRV~LAraL-~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~ 857 (916)
T 3pih_A 805 TLSGGEAQRIKLASEL-RKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857 (916)
T ss_dssp TCCHHHHHHHHHHHHH-TSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH-hhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 8999999999999999 765 5799999 889999999999998754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-12 Score=139.22 Aligned_cols=49 Identities=10% Similarity=-0.055 Sum_probs=42.8
Q ss_pred hhchhHHhhcCcccccccccccccccCC---CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 258 QTFPEIKEMLKANEPAKCSFNNCLHLGE---PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 258 ~~~p~~~~~LSgGq~qr~~iaralh~~e---P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+..+. .|||||+||++||+++ +.+ |+++|+| |+.....++++|.++...
T Consensus 725 ~~~~~---~LSGGekQRv~LAraL-~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 725 GQPAT---ELSGGEAQRIKLATEL-RRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp TCCGG---GCCHHHHHHHHHHHTT-SSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCcc---cCCHHHHHHHHHHHHH-HhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 44555 9999999999999999 775 7999999 889999999999998754
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-12 Score=133.01 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=97.0
Q ss_pred EEEEcCCccchHHHhh-cc-cCCEEEEEecCCCcHHHHHHH--HhcCCCCCCcccccCccCCCCCcceecCcccc-----
Q 016339 140 LFCSVESKLGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINA--LRSSPHASDAADVDNWFEPILGSKWFEDQRVG----- 210 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~-~i-~Ge~vaLvGpSGsGKSTLLn~--L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~----- 210 (391)
+........+|++|++ .+ +|++++|+||||||||||+++ +.|+. .|.+|.|++++.+..
T Consensus 18 ~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~------------~~~~g~i~v~g~~~~~~~~~ 85 (525)
T 1tf7_A 18 IAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII------------EFDEPGVFVTFEETPQDIIK 85 (525)
T ss_dssp CCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------------HHCCCEEEEESSSCHHHHHH
T ss_pred cccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH------------hCCCCEEEEEEeCCHHHHHH
Confidence 3334456789999999 99 999999999999999999999 67988 788999999886531
Q ss_pred ------ccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC
Q 016339 211 ------EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 211 ------~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~ 284 (391)
.+++.+. ...++.++... +.+ .....+..+++.++.+..+. .||+||+|++.|+..+ ..
T Consensus 86 ~~~~~g~~~q~~~----~~~~l~~~~~~------~~~-~~~~~l~~~~l~~~~~~~~~---~LS~g~~~~lilDe~t-~~ 150 (525)
T 1tf7_A 86 NARSFGWDLAKLV----DEGKLFILDAS------PDP-EGQEVVGGFDLSALIERINY---AIQKYRARRVSIDSVT-SV 150 (525)
T ss_dssp HHGGGTCCHHHHH----HTTSEEEEECC------CCS-SCCSCCSSHHHHHHHHHHHH---HHHHHTCSEEEEECST-TT
T ss_pred HHHHcCCChHHhh----ccCcEEEEecC------ccc-chhhhhcccCHHHHHHHHHH---HHHHcCCCEEEECCHH-HH
Confidence 1111110 00112111110 001 11112233445566677777 9999999999999988 66
Q ss_pred CCcEEEecCHHHHHHHHHHHHHHHHH
Q 016339 285 EPGCVVKGDWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 285 eP~~lllDD~~~~~~~~~ll~el~~~ 310 (391)
.|. .-.|+.....+++++..+++.
T Consensus 151 ~~~--~~lD~~~~~~l~~ll~~l~~~ 174 (525)
T 1tf7_A 151 FQQ--YDASSVVRRELFRLVARLKQI 174 (525)
T ss_dssp STT--TCCHHHHHHHHHHHHHHHHHH
T ss_pred HHh--cCCHHHHHHHHHHHHHHHHHC
Confidence 665 123688888999999999764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.3e-12 Score=117.98 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=24.8
Q ss_pred EEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 142 CSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 142 ~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|.++..+|+++||.+ +|++++|+||||||||||+++|+|+.
T Consensus 7 ~~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 7 HSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ----------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3566778999999999 89999999999999999999999975
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-12 Score=142.83 Aligned_cols=50 Identities=8% Similarity=0.041 Sum_probs=43.0
Q ss_pred hhhchhHHhhcCcccccccccccccccCC---CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGE---PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 257 ~~~~p~~~~~LSgGq~qr~~iaralh~~e---P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+..+. .|||||+||++||+++ +.+ |+++|+| |+.....++++|.++...
T Consensus 839 l~~~~~---~LSGGekQRv~LAraL-~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 897 (972)
T 2r6f_A 839 LGQPAT---TLSGGEAQRVKLAAEL-HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897 (972)
T ss_dssp TTCCGG---GCCHHHHHHHHHHHHH-SSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ccCchh---hCCHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 345566 9999999999999999 765 5999999 889999999999998754
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.20 E-value=6e-13 Score=135.35 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=98.2
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc---ccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ---RVG 210 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~---~v~ 210 (391)
..++++++|+ +..+|+++ |.+ +|++++|+||||||||||+++|+|+. +|++|.|.+.|. ++.
T Consensus 133 ~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~------------~~~~G~i~~~G~r~~ev~ 199 (438)
T 2dpy_A 133 QRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT------------RADVIVVGLIGERGREVK 199 (438)
T ss_dssp TSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS------------CCSEEEEEEESCCHHHHH
T ss_pred EEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc------------CCCeEEEEEeceecHHHH
Confidence 4567788887 56799999 999 99999999999999999999999999 899999999998 454
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc-----ccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCC
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY-----LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~-----l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~e 285 (391)
.+...........+.+.++++..... ..++..+........+ ....... +....+|+|| ||+++| +.+
T Consensus 200 ~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-~~v~~~l-d~l~~lS~g~-qrvslA----l~~ 272 (438)
T 2dpy_A 200 DFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-QHVLLIM-DSLTRYAMAQ-REIALA----IGE 272 (438)
T ss_dssp HHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-CEEEEEE-ECHHHHHHHH-HHHHHH----TTC
T ss_pred HHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-CCHHHHH-HhHHHHHHHH-HHHHHH----hCC
Confidence 33221000011345678888742110 0000000000000000 0000001 1123789999 999999 578
Q ss_pred CcEEEec--CHHHHHHHHHHHHHHHH
Q 016339 286 PGCVVKG--DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 286 P~~lllD--D~~~~~~~~~ll~el~~ 309 (391)
|++ .. |+..+..+.++++++..
T Consensus 273 p~~--t~glD~~~~~~l~~ll~r~~~ 296 (438)
T 2dpy_A 273 PPA--TKGYPPSVFAKLPALVERAGN 296 (438)
T ss_dssp CCC--SSSCCTTHHHHHHHHHTTCSC
T ss_pred Ccc--cccCCHHHHHHHHHHHHHHHh
Confidence 876 33 88999999999988754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.9e-12 Score=127.26 Aligned_cols=130 Identities=22% Similarity=0.185 Sum_probs=71.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
+++.+++++|++..++++++|.+ +|+||||||||||||+|+|.. .+..|. ++..+.. ..
T Consensus 12 l~~~~l~~~y~~~~vl~~vsf~I-----~lvG~sGaGKSTLln~L~g~~------------~~~~~~---~~~~~~~-~~ 70 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGFEFTL-----MVVGESGLGKSTLINSLFLTD------------LYSPEY---PGPSHRI-KK 70 (418)
T ss_dssp ---CCCCCCTTTTTCC-CCCEEE-----EEECCTTSSHHHHHHHHTTCC------------CCCCCC---CSCC------
T ss_pred EEEEecceeECCEEEecCCCEEE-----EEECCCCCcHHHHHHHHhCCC------------CCCCCC---CCcccCC-cc
Confidence 56788999999889999999887 999999999999999999987 333331 1111110 00
Q ss_pred ccCCCcceeeeEEEEeccCC----CcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCc---
Q 016339 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--- 287 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~----~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~--- 287 (391)
.. ....++++++..+ ..+.||+|+....-.......+.+. +...++.+++|+++||+++ +.+|.
T Consensus 71 t~-----~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~---i~~~~~~~l~qr~~IaRal-~~d~~~~v 141 (418)
T 2qag_C 71 TV-----QVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDY---IDSKFEDYLNAESRVNRRQ-MPDNRVQC 141 (418)
T ss_dssp CC-----EEEEEECC------CEEEEEEECC-----------CHHHHHH---HHHHHHHHTTTSCC-CCCC-CCCC-CCE
T ss_pred ce-----eeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHh-ccCCCeeE
Confidence 00 0122344443322 2367888875431100001122222 2235666778999999998 99999
Q ss_pred EEEecCH
Q 016339 288 CVVKGDW 294 (391)
Q Consensus 288 ~lllDD~ 294 (391)
|+++|+|
T Consensus 142 lL~ldeP 148 (418)
T 2qag_C 142 CLYFIAP 148 (418)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 8888854
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-13 Score=132.92 Aligned_cols=123 Identities=13% Similarity=0.116 Sum_probs=80.0
Q ss_pred HHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc-eeeeEEE
Q 016339 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH-TTRHVSL 228 (391)
Q Consensus 151 ~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~-ttr~i~~ 228 (391)
..+++.+ +|++++|+||||||||||++.|+|++ .|++|+|.+.+.++...........+ ...++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l------------~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~ 215 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL------------KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI 215 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH------------HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc------------cccCCEEEEecccccccchhHHHHHHHHhcCeEE
Confidence 3466777 79999999999999999999999998 88999999998776432110000000 1234667
Q ss_pred EeccCC-Ccc----cCCc------ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCc--EEEec
Q 016339 229 LPLSGG-GYL----ADTP------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--CVVKG 292 (391)
Q Consensus 229 v~~~~~-~~l----~Dtp------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~--~lllD 292 (391)
+++..+ ... .++- +.....+..+++....+.++. +|| +||+++|+++ ..+|. ++|+|
T Consensus 216 v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~---eLS---kqr~~iaral-~~~P~e~lLvLD 285 (359)
T 2og2_A 216 VVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLME---ELI---ACKKAVGKIV-SGAPNEILLVLD 285 (359)
T ss_dssp ECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHH---HHH---HHHHHHHHHS-TTCCSEEEEEEE
T ss_pred EEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHH---HHH---HHHHHHHHHH-hcCCCceEEEEc
Confidence 776543 210 0110 000011222333333445555 888 8999999999 99999 99999
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-12 Score=116.92 Aligned_cols=111 Identities=12% Similarity=0.009 Sum_probs=60.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC---CCcceecCccccccc---cccCCCcceeeeEEEEeccC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEVS---TKSGRGKHTTRHVSLLPLSG 233 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~---~G~I~~~g~~v~~v~---~~~~~~~~ttr~i~~v~~~~ 233 (391)
++++|+|+||||||||+++|+|++ .|+ .|.|.+++.++..+. ....+.+...-.+.++.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~------------~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~ 70 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL------------RERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVK 70 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH------------HHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------------hhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCc
Confidence 579999999999999999999998 777 899999988754432 11100000000022333321
Q ss_pred CCcccCCcccchHHHHhCChhHHhhh-chh----HHhhcCcccccccccccccccCCCcE
Q 016339 234 GGYLADTPGFNQPSLLKVTKQSLAQT-FPE----IKEMLKANEPAKCSFNNCLHLGEPGC 288 (391)
Q Consensus 234 ~~~l~Dtpg~~~~~l~~~~~~~l~~~-~p~----~~~~LSgGq~qr~~iaralh~~eP~~ 288 (391)
-.++.+ + . ... ..++.++... +|. +.+.|||||+||+++||++ +.+|.+
T Consensus 71 ~~~i~~--~-~-~~~-~a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARal-l~~p~i 124 (171)
T 2f1r_A 71 LAFIRR--V-S-EEE-GNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKP-EEVEHF 124 (171)
T ss_dssp EEEEEE--C-C-HHH-HTCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSG-GGGGGG
T ss_pred EEEEec--C-C-hhh-hhCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecc-cCCCcc
Confidence 111111 0 0 111 1233333333 331 2236999999999999999 888765
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.4e-12 Score=114.19 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=65.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCccc
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~ 238 (391)
|++++|+||||||||||+++|+|++ . ++| |.++|.++..+.. ..+.++++++...+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~------------~-~~G-i~~~g~~~~~~~~-------~~~~ig~~~~~~~g~~- 58 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL------------K-SSG-VPVDGFYTEEVRQ-------GGRRIGFDVVTLSGTR- 58 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH------------H-HTT-CCCEEEECCEEET-------TSSEEEEEEEETTSCE-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc------------c-cCC-EEEcCEecchhHh-------hhceEEEEEEecccce-
Confidence 6889999999999999999999998 7 889 9888876633221 2345667666543211
Q ss_pred CCcccchHHHHhC--ChhH-----HhhhchhHHhhcCccccccc-cccc---ccccCCCcEEEecC
Q 016339 239 DTPGFNQPSLLKV--TKQS-----LAQTFPEIKEMLKANEPAKC-SFNN---CLHLGEPGCVVKGD 293 (391)
Q Consensus 239 Dtpg~~~~~l~~~--~~~~-----l~~~~p~~~~~LSgGq~qr~-~iar---alh~~eP~~lllDD 293 (391)
.. +..+ ...+ ....+.. .+|+||++++ ++++ |+ ..+|+++|+|.
T Consensus 59 ---~~----l~~~~~~~~~~~~~~~v~~~~~---~ls~~er~~~~~l~~~a~A~-~~~~dvlilDE 113 (189)
T 2i3b_A 59 ---GP----LSRVGLEPPPGKRECRVGQYVV---DLTSFEQLALPVLRNADCSS-GPGQRVCVIDE 113 (189)
T ss_dssp ---EE----EEECCCCCCSSSCCEESSSSEE---CHHHHHTTTTTTTCCCCCCC-SSCCCCEEECC
T ss_pred ---eh----hhcccccCCccccccccceEEE---cchHHHHHHHHHHhhhhHhh-ccCCCEEEEeC
Confidence 00 0001 0000 1111122 5788888777 4454 56 88999999994
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.6e-12 Score=122.85 Aligned_cols=144 Identities=16% Similarity=0.104 Sum_probs=92.0
Q ss_pred eeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 138 EPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 138 ~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++.+.|+ +..+++++ |.+ +|++++|+||||||||||+++|+|+. .|+.|.+.+.|.+...+...
T Consensus 49 ~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~------------~~~~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 49 QVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA------------SADIIVLALIGERGREVNEF 115 (347)
T ss_dssp CCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS------------CCSEEEEEEESCCHHHHHHH
T ss_pred cccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCEEEEEEecccHHHHHHH
Confidence 55566776 56799999 999 99999999999999999999999999 89999998887653222111
Q ss_pred cC-CCc-ceeeeEEEEeccCCCcccCCcccch-HHHHhCChhHH-hh---------hchhHHhhcCcccccccccccccc
Q 016339 216 SG-RGK-HTTRHVSLLPLSGGGYLADTPGFNQ-PSLLKVTKQSL-AQ---------TFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 216 ~~-~~~-~ttr~i~~v~~~~~~~l~Dtpg~~~-~~l~~~~~~~l-~~---------~~p~~~~~LSgGq~qr~~iaralh 282 (391)
.+ ... ...+.+.++++.. +.+.... ..+..+.+.+. .+ ..+. .||+|| |++++|
T Consensus 116 i~~~~~~~~~~~v~~~~~~~-----~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~---~lS~g~-r~v~la---- 182 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSD-----RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVT---RYARAA-RDVGLA---- 182 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTT-----SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH---HHHHHH-HHHHHH----
T ss_pred HHhhhhhhhhceEEEEECCC-----CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHH---HHHHHH-HHHHHH----
Confidence 00 000 0123344444321 1111110 01111111111 11 2233 789999 899999
Q ss_pred cCCCcEEEec--CHHHHHHHHHHHHHHHH
Q 016339 283 LGEPGCVVKG--DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 283 ~~eP~~lllD--D~~~~~~~~~ll~el~~ 309 (391)
+++|.+ .. |+..+..+.++++++..
T Consensus 183 l~~p~~--t~Gldp~~~~~l~~ller~~~ 209 (347)
T 2obl_A 183 SGEPDV--RGGFPPSVFSSLPKLLERAGP 209 (347)
T ss_dssp TTCCCC--BTTBCHHHHHHHHHHHTTCEE
T ss_pred cCCCCc--ccCCCHHHHHHHHHHHHHHhC
Confidence 467776 33 89999999999988753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-11 Score=122.46 Aligned_cols=110 Identities=24% Similarity=0.368 Sum_probs=77.4
Q ss_pred ccccccccccceeEEEEEecCCCC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcC
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVE 145 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~-~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~ 145 (391)
.+....+.++|.+++|+.+..+.. ....+.++| +..++|+++|+||+|+.+... .. ..+.++|+ +.+.+|..
T Consensus 74 ~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l---~~~~~pvilv~NK~D~~~~~~--~~-~~~~~lg~~~~~~iSA~ 147 (436)
T 2hjg_A 74 QQAEIAMDEADVIIFMVNGREGVTAADEEVAKIL---YRTKKPVVLAVNKLDNTEMRA--NI-YDFYSLGFGEPYPISGT 147 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH---TTCCSCEEEEEECCCC-------CC-CSSGGGSSCCCEECBTT
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH---HHcCCCEEEEEECccCccchh--hH-HHHHHcCCCCeEEEeCc
Confidence 344556789999999999876522 222334443 568999999999999976531 11 13446777 78899999
Q ss_pred CccchHHHhhcc----c---------C-CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQRL----R---------D-QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~~i----~---------G-e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++++--.+ . + -.++|+|.+|||||||+|.|.|..
T Consensus 148 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp TTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 988887765443 1 1 279999999999999999999875
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-12 Score=124.90 Aligned_cols=135 Identities=16% Similarity=0.089 Sum_probs=76.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc-eeeeEEEEeccCCCc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH-TTRHVSLLPLSGGGY 236 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~-ttr~i~~v~~~~~~~ 236 (391)
+|++++|+||||||||||++.|+|++ .|++|+|.+.+.++...........+ ...++.++++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll------------~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 168 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY------------QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTD 168 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH------------HTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH------------HhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCC
Confidence 58999999999999999999999999 89999999999876432210000000 013456666654321
Q ss_pred ccCCc--ccchHHHH-----hCChhHHhhhchhHHhhcCcccccccccccccccCCCc--EEEecCHHHHHHHHHHHHHH
Q 016339 237 LADTP--GFNQPSLL-----KVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--CVVKGDWERYQYYFQLLDEI 307 (391)
Q Consensus 237 l~Dtp--g~~~~~l~-----~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~--~lllDD~~~~~~~~~ll~el 307 (391)
...+. .+...... .++.....+.......+|| +||+++||++ ..+|. ++++| +......++.+.++
T Consensus 169 p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs---~~r~~iaRal-~~~P~~~lLvLD-a~t~~~~~~~~~~~ 243 (304)
T 1rj9_A 169 SAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELK---KVKRAIAKAD-PEEPKEVWLVLD-AVTGQNGLEQAKKF 243 (304)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHH---HHHHHHHHHC-TTCCSEEEEEEE-TTBCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHH---HHHHHHHHhh-cCCCCeEEEEEc-HHHHHHHHHHHHHH
Confidence 00000 00000000 0111111122222222555 7999999999 99999 44455 44444555556555
Q ss_pred HH
Q 016339 308 RI 309 (391)
Q Consensus 308 ~~ 309 (391)
.+
T Consensus 244 ~~ 245 (304)
T 1rj9_A 244 HE 245 (304)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4e-11 Score=113.76 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=46.1
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC-CCcceecCccccccc
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRVGEVS 213 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~-~G~I~~~g~~v~~v~ 213 (391)
.+|++++ + +|++++|+||||||||||+++|+|++ .|+ +|+|.++|.++..+.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~------------~~~~~G~I~~~g~~i~~~~ 68 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI------------NQTKSYHIITIEDPIEYVF 68 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH------------HHHCCCEEEEEESSCCSCC
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC------------CCCCCCEEEEcCCcceeec
Confidence 4789998 6 89999999999999999999999998 887 999999887776554
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-11 Score=108.92 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=48.2
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+|++..+++++||.+ +|++++|+||||||||||+++|+|+. |++|+|.++|..+.
T Consensus 16 ~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-------------~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 16 RFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-------------GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-------------TCCSCCCCCTTTCE
T ss_pred HHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-------------CCCCeEEECCEeee
Confidence 455567899999999 89999999999999999999999985 57899999887764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.2e-11 Score=118.93 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=39.3
Q ss_pred hcCccccccccccccccc------CCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHL------GEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~------~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+|+ + .+|+++|+| |+.....+++++.++..
T Consensus 279 ~LSgGe~qr~~la~al-~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~ 333 (365)
T 3qf7_A 279 GLSGGERALISISLAM-SLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER 333 (365)
T ss_dssp GSCHHHHHHHHHHHHH-HHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG
T ss_pred hCCHHHHHHHHHHHHH-HhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999 6 799999999 89999999999988754
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7.3e-12 Score=113.99 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=25.4
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+ ..+ +|++++|+||||||||||+|+|+|+.
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4555 466 89999999999999999999999987
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-10 Score=105.01 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=33.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++.++|+ ..++++ +.+ +|..++|+|+||||||||+|.|+|..
T Consensus 5 ~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 5 NYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp ------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466777776 367777 666 88999999999999999999999975
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.8e-10 Score=113.62 Aligned_cols=109 Identities=24% Similarity=0.342 Sum_probs=72.8
Q ss_pred cccccccccceeEEEEEecCCCC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCC
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVES 146 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~-~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~ 146 (391)
+....+.++|.+++|+....+.. ....+.++| +..++++++|+||+|+.+... .+ ..+..+|+ +.+.+|..+
T Consensus 95 ~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l---~~~~~pvilV~NK~D~~~~~~--~~-~e~~~lg~~~~~~iSA~~ 168 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGREGVTAADEEVAKIL---YRTKKPVVLAVNKLDNTEMRA--NI-YDFYSLGFGEPYPISGTH 168 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHH---TTCCSCEEEEEECC------------CCSGGGSSSSEEECCTTT
T ss_pred HHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHH---HHcCCCEEEEEECccchhhhh--hH-HHHHHcCCCceEEeeccc
Confidence 34456789999999988765322 223334444 568999999999999975432 11 23446676 567888888
Q ss_pred ccchHHHhhcc--------------cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRL--------------RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i--------------~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+++++...+ ....++++|.+|+|||||+|.|.+..
T Consensus 169 g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp CTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred ccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCC
Confidence 88877765443 12468999999999999999999865
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-10 Score=110.02 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=37.9
Q ss_pred hcCccccccccccccccc----CCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHL----GEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~----~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
.||+||+|+++||+++ + .+|+++|+| |+.....+.+++.++.
T Consensus 219 ~lS~Gq~q~v~ia~~l-~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~ 270 (322)
T 1e69_A 219 LLSGGEKALVGLALLF-ALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS 270 (322)
T ss_dssp GSCHHHHHHHHHHHHH-HHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHH-HHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999999999998 4 678999999 8889999999998874
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-10 Score=117.64 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=45.9
Q ss_pred EEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.++|+...+|+++ +.-+|++++|+||||||||||+++|+|+. .|++|+|.+.+.++
T Consensus 150 g~~~~~~~~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l------------~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 150 GMTAHNHDNFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQEL------------NSSERNILTVEDPI 205 (418)
T ss_dssp CCCHHHHHHHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHH------------CCTTSCEEEEESSC
T ss_pred CCCHHHHHHHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhc------------CCCCCEEEEecccc
Confidence 3455555678887 44588999999999999999999999998 78889998877655
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-09 Score=107.60 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=50.9
Q ss_pred CCeeEEEE---cCC--ccch---------HHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCC
Q 016339 136 GYEPLFCS---VES--KLGL---------DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200 (391)
Q Consensus 136 g~~~v~~s---~~~--~~~L---------~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G 200 (391)
.|+++.++ |.. ..+| +++++.+ +|++++|+||||||||||+|+|+|++ +|++|
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~------------~~~~g 204 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI------------PFDQR 204 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS------------CTTSC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC------------CCCce
Confidence 46777766 642 2344 9999999 89999999999999999999999999 89999
Q ss_pred cceecCc
Q 016339 201 SKWFEDQ 207 (391)
Q Consensus 201 ~I~~~g~ 207 (391)
.|.++|.
T Consensus 205 ~I~ie~~ 211 (361)
T 2gza_A 205 LITIEDV 211 (361)
T ss_dssp EEEEESS
T ss_pred EEEECCc
Confidence 9999874
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.4e-10 Score=115.88 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=75.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCc--ceecCccccccccccCCCcceeeeEEEEeccCCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS--KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~--I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~ 235 (391)
+|++++|+||||||||||++.|+|.. .+. |. +++..++... . ...+. ...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~------------~~~-G~~vi~~~~ee~~~-----~----l~~~~----~~~-- 331 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA------------CAN-KERAILFAYEESRA-----Q----LLRNA----YSW-- 331 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH------------HTT-TCCEEEEESSSCHH-----H----HHHHH----HTT--
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH------------HhC-CCCEEEEEEeCCHH-----H----HHHHH----HHc--
Confidence 89999999999999999999999987 443 43 2333221100 0 00000 000
Q ss_pred cccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-----CHH-----HHHHHHHHHH
Q 016339 236 YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-----DWE-----RYQYYFQLLD 305 (391)
Q Consensus 236 ~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-----D~~-----~~~~~~~ll~ 305 (391)
++....+...+...+.+..|. .||+||+|++.+|+++ ..+|+++|+| |.. ....+.+++.
T Consensus 332 ------g~~~~~~~~~g~~~~~~~~p~---~LS~g~~q~~~~a~~l-~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~ 401 (525)
T 1tf7_A 332 ------GMDFEEMERQNLLKIVCAYPE---SAGLEDHLQIIKSEIN-DFKPARIAIDSLSALARGVSNNAFRQFVIGVTG 401 (525)
T ss_dssp ------SCCHHHHHHTTSEEECCCCGG---GSCHHHHHHHHHHHHH-TTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHhCCCEEEEEeccc---cCCHHHHHHHHHHHHH-hhCCCEEEEcChHHHHhhCChHHHHHHHHHHHH
Confidence 111111222333345566677 8999999999999999 9999999999 444 6667777777
Q ss_pred HHHHH
Q 016339 306 EIRIR 310 (391)
Q Consensus 306 el~~~ 310 (391)
.+++.
T Consensus 402 ~l~~~ 406 (525)
T 1tf7_A 402 YAKQE 406 (525)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 77643
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.8e-10 Score=113.92 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=52.0
Q ss_pred EEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 141 FCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.++..+..++++++|.+ + ++++|+||||||||||+++|+|+. .|++|+|.++|.++...+
T Consensus 11 ~l~~~~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 11 SLTLINWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL------------IPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH------------CCCTTTCCCCCTTSCSCC
T ss_pred EEEEeccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC------------CCCCCEEEECCEEcccCc
Confidence 34445567899999999 6 999999999999999999999999 999999999998875443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=4e-09 Score=106.59 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=37.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCE--EEEEecCCCcHHHHHHHHhcCC
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~--vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.... +++|++.. ++++++.+ +|++ ++|+||||||||||||+|+|+.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 33444 66787777 99999999 8999 9999999999999999999985
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=9.5e-10 Score=108.01 Aligned_cols=64 Identities=22% Similarity=0.085 Sum_probs=55.6
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+..+.+.++|+...+++++++.+ +|++++|+||||||||||+|+|+|+. .|++|+|.+.+.++.
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~------------~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL------------TAAGHKVAVLAVDPS 94 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH------------HHTTCCEEEEEECGG
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh------------hhCCCEEEEEEEcCc
Confidence 44566777777778999999999 89999999999999999999999998 888999988876654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.1e-10 Score=100.88 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=31.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+|++++|+||||||||||+++|++.. ..|.|.+++.++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~--------------~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP--------------GVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS--------------SSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc--------------CCCeEEEcccch
Confidence 68999999999999999999999964 456777766554
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-10 Score=108.78 Aligned_cols=117 Identities=13% Similarity=0.132 Sum_probs=68.8
Q ss_pred cCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc------------
Q 016339 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG------------ 210 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~------------ 210 (391)
+.+..+++++++.+ +| ++|+||||||||||+++|+|.. .+ |.+.++|.++.
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~------------~~--~~i~i~g~~l~~~~~~~~~~~i~ 93 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANES------------GL--NFISVKGPELLNMYVGESERAVR 93 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT------------TC--EEEEEETTTTCSSTTHHHHHHHH
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc------------CC--CEEEEEcHHHHhhhhhHHHHHHH
Confidence 44566889999988 55 9999999999999999999987 33 45666665442
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEE
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCV 289 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~l 289 (391)
.+++... .....+.++. +.. .+....+ .... -....+.+.++. .|||||+|+..|+.|+ .+.|+++
T Consensus 94 ~vf~~a~---~~~p~i~~~D-eid-~~~~~r~--~~~~--~~~~~~~~~~l~---~Lsgg~~~~~~i~ia~-tn~p~~L 159 (274)
T 2x8a_A 94 QVFQRAK---NSAPCVIFFD-EVD-ALCPRRS--DRET--GASVRVVNQLLT---EMDGLEARQQVFIMAA-TNRPDII 159 (274)
T ss_dssp HHHHHHH---HTCSEEEEEE-TCT-TTCC-------------CTTHHHHHHH---HHHTCCSTTCEEEEEE-ESCGGGS
T ss_pred HHHHHHH---hcCCCeEeee-hhh-hhhcccC--CCcc--hHHHHHHHHHHH---hhhcccccCCEEEEee-cCChhhC
Confidence 1111100 0001121111 111 1110000 0000 011234455555 9999999999999999 9999864
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-08 Score=108.08 Aligned_cols=121 Identities=12% Similarity=-0.028 Sum_probs=66.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-CCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~D 239 (391)
.++|+||||||||||+++|+|+. .| ++|.|+++|.++....... .....+.++++++....+ +
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~------------~P~~sG~vt~~g~~i~~~~~~~--~~~~~~~i~~v~Q~~~l~--~ 110 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA------------LPRGSGIVTRCPLVLKLKKLVN--EDKWRGKVSYQDYEIEIS--D 110 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------------------CCCSCEEEEEEECSS--SSCCEEEESCC---CCCC--C
T ss_pred eEEEECCCCChHHHHHHHHhCCC------------CCCCCCeEEEcCEEEEEecCCc--cccceeEEeeecccccCC--C
Confidence 49999999999999999999998 78 7999999998864332211 112345666666553221 1
Q ss_pred CcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCH------------HHHHHHHHHHHHH
Q 016339 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------------ERYQYYFQLLDEI 307 (391)
Q Consensus 240 tpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~------------~~~~~~~~ll~el 307 (391)
. ..+.. .+......+.. .-.+...+.+.++.+. .+.|+++++|.| .....+.+++.++
T Consensus 111 ~-----~tv~e-~i~~~~~~~~~---~~~~~s~~~i~l~i~~-~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~ 180 (608)
T 3szr_A 111 A-----SEVEK-EINKAQNAIAG---EGMGISHELITLEISS-RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKY 180 (608)
T ss_dssp H-----HHHHT-THHHHHHHHHC---SSSCCCSCCEEEEEEE-SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHH
T ss_pred H-----HHHHH-HHHHHHHHhcC---CccccchHHHHHHhcC-CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 0 01100 01111111111 1122334666777777 788999999944 4466777777775
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-09 Score=110.35 Aligned_cols=114 Identities=21% Similarity=0.215 Sum_probs=66.8
Q ss_pred hHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEE
Q 016339 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (391)
Q Consensus 150 L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~ 228 (391)
-++|++++ .|..++|+|+||||||||||+|++... .+.+..... ...++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------------------~i~~~~ftT----------l~p~~G~ 198 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------------------KIAPYPFTT----------LSPNLGV 198 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------------------EECCCTTCS----------SCCEEEE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------------------cccCcccce----------ecceeeE
Confidence 35777888 689999999999999999999999851 011111000 0112333
Q ss_pred EeccC--CCcccCCcccchH----------HHHhCC-hhHHhhhc---hhHHhhcCcccccccccccccccCCCcEEEec
Q 016339 229 LPLSG--GGYLADTPGFNQP----------SLLKVT-KQSLAQTF---PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (391)
Q Consensus 229 v~~~~--~~~l~Dtpg~~~~----------~l~~~~-~~~l~~~~---p~~~~~LSgGq~qr~~iaralh~~eP~~lllD 292 (391)
+.+.. ...+.|+|++... .+.... ...++..+ ......+|+|++|++++++++ ...|.++|+.
T Consensus 199 V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL-~~~P~ILVlN 277 (416)
T 1udx_A 199 VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALN 277 (416)
T ss_dssp EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEE
T ss_pred EEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHh-hcCCEEEEEE
Confidence 33321 1235566665221 111000 00011000 122237999999999999999 8999999986
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.1e-10 Score=100.82 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|+|++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999987
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=4.3e-10 Score=111.22 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=37.0
Q ss_pred HHHhhcc-c--CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCC----Ccceec
Q 016339 151 DSLLQRL-R--DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL----GSKWFE 205 (391)
Q Consensus 151 ~~ls~~i-~--Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~----G~I~~~ 205 (391)
+.|++.+ + |+.++|+||||||||||+++|+|++ .|++ |+++++
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~------------~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF------------NTTSAWEYGREFVF 208 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT------------TCEEECCTTHHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh------------CCCcchhhHHHHHH
Confidence 3455666 6 9999999999999999999999999 7888 888764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-10 Score=104.02 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=25.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|+|++
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999998
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=98.63 E-value=3.3e-08 Score=96.82 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=37.8
Q ss_pred hcCccccc------ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPA------KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~q------r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+| ++++|+++ +.+|+++|+| |+.....+.++|.++..
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l-~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~ 302 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYL-AGEISLLILDEPTPYLDEERRRKLITIMERYLK 302 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHT-TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG
T ss_pred HCCHHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 79999999 66788888 8999999999 88999999999988753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=5e-09 Score=115.04 Aligned_cols=116 Identities=11% Similarity=0.037 Sum_probs=68.4
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
..++++++|.+ +|++++|+|||||||||||++|++... .+..| ..++.. ...
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-----------~aq~g---------~~vpa~-------~~~ 712 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-----------MAQIG---------SYVPAE-------EAT 712 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH-----------HHHHT---------CCBSSS-------EEE
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH-----------HhhcC---------ccccch-------hhh
Confidence 45677888888 799999999999999999999986530 00000 011110 011
Q ss_pred EEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHH
Q 016339 226 VSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQY 299 (391)
Q Consensus 226 i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~ 299 (391)
+..+ + ..+..++..+....... .+|+||+|++.++++ +.+|.++|+| |+.....
T Consensus 713 i~~~---------d------~i~~~ig~~d~l~~~~s---tfs~em~~~~~il~~--a~~p~LlLLDEP~~GlD~~~~~~ 772 (918)
T 3thx_B 713 IGIV---------D------GIFTRMGAADNIYKGRS---TFMEELTDTAEIIRK--ATSQSLVILDELGRGTSTHDGIA 772 (918)
T ss_dssp EECC---------S------EEEEEC----------C---CHHHHHHHHHHHHHH--CCTTCEEEEESTTTTSCHHHHHH
T ss_pred hhHH---------H------HHHHhCChHHHHHHhHH---HhhHHHHHHHHHHHh--ccCCCEEEEeCCCCCCCHHHHHH
Confidence 1110 0 00111222222222223 678999999999887 5799999999 6765555
Q ss_pred HH-HHHHHHHH
Q 016339 300 YF-QLLDEIRI 309 (391)
Q Consensus 300 ~~-~ll~el~~ 309 (391)
+. .+++.+..
T Consensus 773 i~~~il~~L~~ 783 (918)
T 3thx_B 773 IAYATLEYFIR 783 (918)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 54 77777754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-09 Score=104.40 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=36.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
++++|+|+||||||||||.|.|..... ..-...|+.|+|.++|..+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~----~~aVi~~d~G~i~idg~~l~~ 52 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGY----KIAVIENEFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCC----CEEEECSSCCSCCEEEEEECT
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCC----cEEEEEecCcccCccHHHHhC
Confidence 478999999999999999999985110 111225789999999877643
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-09 Score=98.84 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=33.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHh---cCCCCCCcccccCccCCCCCcceecCc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALR---SSPHASDAADVDNWFEPILGSKWFEDQ 207 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~---gl~~~~~~~~~~~~~~p~~G~I~~~g~ 207 (391)
++++++|+||||||||||+++|+ |+. .|+.|++.+++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~------------~~~~G~i~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ------------HLSSGHFLRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC------------CEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe------------EecHHHHHHHHH
Confidence 57899999999999999999999 998 888898877653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-08 Score=100.91 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=62.7
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhc--CCeeEEEEcCCcc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW--GYEPLFCSVESKL 148 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~--g~~~v~~s~~~~~ 148 (391)
++..+++++++..+..-. ..+ .++..++.. ....++..++|||+|+.++...+.|..++..+ |......+.....
T Consensus 55 ~~~~~~l~~i~~~~~~l~-~~~-p~~~~l~~~-~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (357)
T 2e87_A 55 NVVRDNLRKVLERTPGLS-TLP-KFYQELVDV-LVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQ 131 (357)
T ss_dssp HHHHHHHHHHHHHSCCGG-GSC-HHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcc-cCC-HHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 345667777554433200 111 223322211 11345566899999999998888898877654 3322221211111
Q ss_pred chHHHh-------h----------------c--ccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLL-------Q----------------R--LRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls-------~----------------~--i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+...+. - . ...-.++|+|+||||||||+|.|++..
T Consensus 132 ~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 132 FYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 111111 0 0 134579999999999999999999875
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=6.9e-08 Score=95.51 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=25.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|+|+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 77899999999999999999999998
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.3e-09 Score=102.79 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=49.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cC-------CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RD-------QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~G-------e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
+..+.+...|++..+++++++.+ .| +.++|+||||+|||||+++|++.... .+.+++|.+...+
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~--------~~~~~sg~~~~~~ 90 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT--------NIHVTSGPVLVKQ 90 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC--------CEEEEETTTCCSH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEechHhcCH
Confidence 33445555678888999999988 33 78999999999999999999997521 0145678777665
Q ss_pred ccc
Q 016339 207 QRV 209 (391)
Q Consensus 207 ~~v 209 (391)
.++
T Consensus 91 ~~l 93 (334)
T 1in4_A 91 GDM 93 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-08 Score=113.56 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=34.5
Q ss_pred EEEEc-CCccchHHHhhcc-c-------CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 140 LFCSV-ESKLGLDSLLQRL-R-------DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 140 v~~s~-~~~~~L~~ls~~i-~-------Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+.| ++..++++++|.+ + |++++|+|||||||||||++| |+.
T Consensus 761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp ------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred EEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 56666 5667899999998 4 799999999999999999999 886
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-08 Score=99.12 Aligned_cols=58 Identities=17% Similarity=0.001 Sum_probs=46.5
Q ss_pred CeeEEEEcCCccchHHHhhcc--------------------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC
Q 016339 137 YEPLFCSVESKLGLDSLLQRL--------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i--------------------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~ 196 (391)
++.+.+.| ..+++++++.+ +|++++|+||||||||||+++|+|+. .
T Consensus 40 ~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l------------~ 105 (308)
T 1sq5_A 40 LEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL------------S 105 (308)
T ss_dssp HHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH------------T
T ss_pred hHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH------------h
Confidence 34455555 35778888765 57899999999999999999999987 6
Q ss_pred --CCCCccee---cCcc
Q 016339 197 --PILGSKWF---EDQR 208 (391)
Q Consensus 197 --p~~G~I~~---~g~~ 208 (391)
|++|+|.+ +|..
T Consensus 106 ~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 106 RWPEHRRVELITTDGFL 122 (308)
T ss_dssp TSTTCCCEEEEEGGGGB
T ss_pred hCCCCCeEEEEecCCcc
Confidence 89999988 6654
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.1e-09 Score=98.68 Aligned_cols=38 Identities=26% Similarity=0.553 Sum_probs=33.0
Q ss_pred cCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|....+++++++.+ +| ++|+||||||||||+++|++..
T Consensus 59 ~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 59 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 44556789999988 56 9999999999999999999986
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.6e-08 Score=89.65 Aligned_cols=38 Identities=32% Similarity=0.346 Sum_probs=32.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC--CCCcceecCc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQ 207 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p--~~G~I~~~g~ 207 (391)
+|++++|+||||||||||+++|+|+. +| ..|.|.+.+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~------------~p~~~~g~v~~ttr 54 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ------------PLYDTQVSVSHTTR 54 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS------------CTTTEEECCCEECS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC------------CCCceEEEEEecCC
Confidence 79999999999999999999999998 54 5677766543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.1e-08 Score=101.66 Aligned_cols=46 Identities=24% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 152 ~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+++|.+ +|++++|+|+||||||||+++|+|++ .+++|+|.+.+.++
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll------------~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF------------EQQGKSVMLAAGDT 331 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH------------HHTTCCEEEECCCT
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHh------------hhcCCeEEEecCcc
Confidence 456666 79999999999999999999999998 88999999976655
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.5e-09 Score=96.50 Aligned_cols=38 Identities=26% Similarity=0.553 Sum_probs=32.9
Q ss_pred cCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|....+++++++.+ +| ++|+||||||||||+++|++..
T Consensus 35 ~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 35 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 44456789999988 56 9999999999999999999976
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-07 Score=97.93 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=37.9
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-|+...+++.+++.+ .|+.++|+||||+|||||+++|+++.
T Consensus 43 i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred EECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 367778899999999 89999999999999999999999998
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-07 Score=98.10 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=43.5
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
.+++++++.+ .|+.++|+||||||||||+|+|+|+. +|++|.|.++|..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i------------~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI------------PPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS------------CTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC------------CCCCCEEEEcCcc
Confidence 4577888888 89999999999999999999999999 8889999887754
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-08 Score=94.59 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=38.5
Q ss_pred hcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc-cCCCcc--eeeeEEEEec
Q 016339 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK-SGRGKH--TTRHVSLLPL 231 (391)
Q Consensus 155 ~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~-~~~~~~--ttr~i~~v~~ 231 (391)
+.+..++++|+||||||||||+++|+|+. .|++|+|.++|.++...+.. ....+| ...+++++++
T Consensus 23 ~~~~~~~~~i~GpnGsGKSTll~~i~g~~------------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 90 (227)
T 1qhl_A 23 FDLDELVTTLSGGNGAGKSTTMAAFVTAL------------IPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSML 90 (227)
T ss_dssp ECHHHHHHHHHSCCSHHHHHHHHHHHHHH------------SCCTTTC------------------CGGGBCSSEEEEEE
T ss_pred EEEcCcEEEEECCCCCCHHHHHHHHhccc------------ccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEE
Confidence 33423789999999999999999999999 89999999999887433221 011122 2356777775
Q ss_pred c
Q 016339 232 S 232 (391)
Q Consensus 232 ~ 232 (391)
.
T Consensus 91 ~ 91 (227)
T 1qhl_A 91 D 91 (227)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=8e-08 Score=86.75 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|+|++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999999976
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=7.7e-08 Score=105.86 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=29.8
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+++++++.+ +|++++|+|||||||||||++|++
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4667888888 699999999999999999999943
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-07 Score=87.62 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=21.6
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHh-cCC
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR-SSP 183 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~-gl~ 183 (391)
+..+++||.+ +|++++|+||||||||||+++|+ |+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4578899999 89999999999999999999999 986
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-08 Score=95.63 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=24.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++|+|+||||||||.+.|.+++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999987
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-07 Score=85.85 Aligned_cols=57 Identities=23% Similarity=0.123 Sum_probs=43.1
Q ss_pred EEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcc--eecCccc
Q 016339 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK--WFEDQRV 209 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I--~~~g~~v 209 (391)
+..+++.....+..++.. +|++++|+||||||||||.++|++.+ . ..|.+ ++++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l------------~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 5 IKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML------------Y-QKGKLCYILDGDNV 64 (200)
T ss_dssp -----CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH------------H-HTTCCEEEEEHHHH
T ss_pred CcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH------------H-hcCceEEEecCchh
Confidence 444556667778888777 89999999999999999999999987 4 56777 7766544
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-07 Score=88.66 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=34.7
Q ss_pred cCCeeE-EEEc-CCccchHHHhhcc-c---CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 135 WGYEPL-FCSV-ESKLGLDSLLQRL-R---DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 135 ~g~~~v-~~s~-~~~~~L~~ls~~i-~---Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.++++ +++| +...+|++++|.+ + |++++|+|+|||||||+.++|++.+
T Consensus 18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 345677 8888 7778999999999 5 9999999999999999999999854
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-07 Score=93.19 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=38.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+|++++|+||||||||||++.|+|++ .|++|+|.+.+.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l------------~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL------------KNHGFSVVIAASDTFR 169 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH------------HHTTCCEEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH------------HhcCCEEEEEeecccc
Confidence 69999999999999999999999998 8999999998887643
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-07 Score=102.88 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=31.1
Q ss_pred ccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..++++++|. |++++|+|||||||||||++|+|+.
T Consensus 566 ~~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 566 EFVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3456788888 9999999999999999999999975
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.31 E-value=4.4e-07 Score=89.33 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=30.7
Q ss_pred cchHHH-hhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSL-LQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~l-s~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..|+.+ ...+ +|++++|+||||||||||++.|++..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456665 3556 89999999999999999999999976
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.8e-07 Score=83.61 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|+|..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999965
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-07 Score=83.32 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=24.9
Q ss_pred hcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 155 QRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 155 ~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+ +|++++|+||||||||||+++|+|+.
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 445 79999999999999999999999986
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.3e-07 Score=88.51 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=40.9
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCC-cceec
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFE 205 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G-~I~~~ 205 (391)
..+|+++++.+ +|++++|+||||||||||++.|++.. .|.+| .+.+.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~------------~~~~G~~v~~~ 70 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW------------GTAMGKKVGLA 70 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH------------HHTSCCCEEEE
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH------------HHHcCCeEEEE
Confidence 35899999988 89999999999999999999999998 67767 66443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=98.21 E-value=8.3e-07 Score=84.01 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=24.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||++.|++..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999855
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=5.2e-07 Score=79.88 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999976
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-06 Score=75.67 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=25.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+.++|+||||+|||||+++|++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999986
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=5e-07 Score=79.55 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=24.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+.++|+||||+|||||+++|++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999999986
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.3e-06 Score=75.20 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=31.1
Q ss_pred Cccch--HHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGL--DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L--~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+...+ +++++.+...+++|+||||||||||+.+|.+..
T Consensus 11 nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 11 GFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEeecCccEEEecCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34455 667777744499999999999999999999987
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-07 Score=88.40 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=56.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l 237 (391)
+|++++|+|||||||||++..|++.. .+..|++.+.+.++.... ..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l------------~~~g~kV~lv~~D~~r~~--------a~-------------- 148 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF------------VDEGKSVVLAAADTFRAA--------AI-------------- 148 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH------------HHTTCCEEEEEECTTCHH--------HH--------------
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH------------HhcCCEEEEEccccccHH--------HH--------------
Confidence 68899999999999999999999988 566666665443321000 00
Q ss_pred cCCcccchHHHHhCChhHHhhhchhHHhhcCccccccc---ccccccccCCCcEEEecC
Q 016339 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC---SFNNCLHLGEPGCVVKGD 293 (391)
Q Consensus 238 ~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~---~iaralh~~eP~~lllDD 293 (391)
+ . ........++ ..++ ..|+|+.+++ ++++++ ..+|+++|+|.
T Consensus 149 -e--q-L~~~~~~~gl----~~~~----~~s~~~~~~v~~~al~~a~-~~~~dvvIiDt 194 (306)
T 1vma_A 149 -E--Q-LKIWGERVGA----TVIS----HSEGADPAAVAFDAVAHAL-ARNKDVVIIDT 194 (306)
T ss_dssp -H--H-HHHHHHHHTC----EEEC----CSTTCCHHHHHHHHHHHHH-HTTCSEEEEEE
T ss_pred -H--H-HHHHHHHcCC----cEEe----cCCccCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 0 0 0000111111 1112 4578888888 778887 88999999993
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.6e-07 Score=90.00 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=38.7
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC-CCcceecCccc
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRV 209 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~-~G~I~~~g~~v 209 (391)
.+++++ + +|++++|+||||||||||+++|+|++ .|+ +|.|.+.+..+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~------------~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI------------NQTKSYHIITIEDPI 175 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHH------------HHHSCCEEEEEESSC
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhc------------CcCCCcEEEEecccH
Confidence 566665 4 79999999999999999999999998 777 89886655433
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4e-06 Score=75.37 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=29.3
Q ss_pred cchHHHhh-cc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 148 LGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 148 ~~L~~ls~-~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+|+.+.. -+ +|++++|+||||||||||++.|++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45677665 45 899999999999999999999998
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.13 E-value=5.4e-07 Score=86.74 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++|+|+||||||||+|.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45689999999999999999999975
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.5e-07 Score=97.73 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=31.1
Q ss_pred ccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+++++++.-+|++++|+|||||||||||++|+|+.
T Consensus 595 ~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 595 PFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3456667766468999999999999999999999974
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.5e-07 Score=83.82 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=35.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHh---cCCCCCCcccccCccCCCCCcce--------ecCccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALR---SSPHASDAADVDNWFEPILGSKW--------FEDQRV 209 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~---gl~~~~~~~~~~~~~~p~~G~I~--------~~g~~v 209 (391)
+|++++|+|||||||||++++|+ |+. .+++|.++ ++|.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~------------~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWR------------LLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCE------------EEEHHHHHHHHHHHHHHTTCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCC------------cCCCCceehHhHHHHHHcCCCc
Confidence 68999999999999999999999 887 88999988 666655
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.07 E-value=9.2e-07 Score=79.97 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=38.9
Q ss_pred ccchHHHhh-cc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 147 KLGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 147 ~~~L~~ls~-~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
..+|+++.. -+ +|++++|+||||||||||++.|++.. .+..|.+.+.+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~------------~~~~~~v~~~~ 58 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG------------LRDGDPCIYVT 58 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH------------HHHTCCEEEEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH------------HHCCCeEEEEE
Confidence 356788876 56 89999999999999999999999877 55666665543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-06 Score=77.26 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=24.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999999999987
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.05 E-value=2.1e-06 Score=77.93 Aligned_cols=26 Identities=46% Similarity=0.658 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 79999999999999999999999876
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.3e-06 Score=84.06 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=27.7
Q ss_pred ccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+|+++++.++ .++|+|++|||||||||+|.|..
T Consensus 24 ~~~l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 24 SSALPTLWDSLP--AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp SCCC----CCCC--EEEEECBTTSSHHHHHHHHHTSC
T ss_pred ccccccccccCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999887 89999999999999999999953
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-06 Score=77.71 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=24.4
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|++..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999999999865
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=98.02 E-value=7.9e-07 Score=86.31 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=69.4
Q ss_pred ccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccchHHH
Q 016339 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153 (391)
Q Consensus 74 ~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L~~l 153 (391)
.+|+|..++ .++ .+.+....+++|+. ...|.+|++|.+.++++-.+ ..++.+...+..+..+...+..+
T Consensus 53 ~Gn~E~~yL-~~L-~~e~~~~rler~l~-----~~~P~IIltrg~~~peelie----~A~~~~IPVL~T~~~ts~~~~~l 121 (314)
T 1ko7_A 53 LGTTELSFY-NLL-PDEERKGRMRKLCR-----PETPAIIVTRDLEPPEELIE----AAKEHETPLITSKIATTQLMSRL 121 (314)
T ss_dssp ECHHHHHHH-HHS-CHHHHTTHHHHHCC-----TTCCCEEECTTCCCCHHHHH----HHHHTTCCEEECCSCHHHHHHHH
T ss_pred EechhHHHH-Hhc-CHHHHHHHHHHHhc-----CCCCEEEEeCCCCCCHHHHH----HHHHCCCeEEEECCchhHHHHHH
Confidence 466676555 333 23344556777762 57788899999998775333 33445888887777666666666
Q ss_pred hhcc-----------------cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 154 LQRL-----------------RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 154 s~~i-----------------~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
...+ .|.-++|.|+||+|||||...|.+.
T Consensus 122 ~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 122 TTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp HHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred HHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5444 3889999999999999999999874
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-06 Score=75.77 Aligned_cols=23 Identities=39% Similarity=0.717 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+||||||||+|.|+|..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999986
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.6e-06 Score=76.40 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=24.3
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
...++++|+|.+ +|++++|+|||||||||+.+.|+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345799999999 89999999999999999999999754
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.7e-06 Score=84.30 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=37.6
Q ss_pred EEEEcCCccchHHHhhcc-cCC------EEEEEecCCCcHHHHHHHHhcCC
Q 016339 140 LFCSVESKLGLDSLLQRL-RDQ------TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i-~Ge------~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+.|+...++.+++..+ .+. +++|+||||||||||+++|.++.
T Consensus 66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 455677888999999888 333 89999999999999999999987
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.7e-06 Score=76.61 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHhc
Q 016339 159 DQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
|++++|+||||||||||+++|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999999986
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.9e-06 Score=76.37 Aligned_cols=40 Identities=23% Similarity=0.018 Sum_probs=33.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+|.+++|+|+||||||||++.|++.. .+..|.+.+.+.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~------------~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL------------REQGISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH------------HHTTCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH------------hhcCCeEEEeccCc
Confidence 57899999999999999999999987 66677776655443
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.89 E-value=5.4e-06 Score=75.04 Aligned_cols=26 Identities=42% Similarity=0.694 Sum_probs=24.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999987
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.7e-05 Score=76.77 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=33.3
Q ss_pred CCccchHHHhhcc----cCCEEEEEecCCCcHHHHHHHHhc-CCCCCCcccccCccCCCCCcceecCccc
Q 016339 145 ESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRS-SPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 145 ~~~~~L~~ls~~i----~Ge~vaLvGpSGsGKSTLLn~L~g-l~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
++..+++.+.-.+ ++..+.|.||||+|||||+++|++ +. .|..|.+.++|...
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~------------~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF------------GPGVYRLKIDVRQF 75 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS------------CTTCCC--------
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc------------CCCCCeEEecceee
Confidence 3444455554444 222399999999999999999999 66 78889998887654
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.85 E-value=7.5e-06 Score=81.85 Aligned_cols=52 Identities=27% Similarity=0.258 Sum_probs=36.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.|..++|+|+||||||||+|+|+|...............|+.|.+.+.|.++
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~ 70 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 70 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcch
Confidence 6899999999999999999999994310111111112368889888877544
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.83 E-value=1.1e-05 Score=73.53 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=23.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|++++|+||||||||||++.|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 7999999999999999999999993
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=6.2e-06 Score=73.34 Aligned_cols=23 Identities=39% Similarity=0.717 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+||||||||+|.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999975
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=6.4e-06 Score=71.81 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+|||||||||+++.|++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999998864
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.80 E-value=1.5e-05 Score=69.45 Aligned_cols=26 Identities=42% Similarity=0.567 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|..++|+|+||||||||+|.|++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36689999999999999999999865
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.76 E-value=5.7e-06 Score=80.94 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=36.5
Q ss_pred EEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 141 FCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+...+++++++.. ++.+++|+|++|||||||+|.|++..
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 37 RHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33455566788999988 78999999999999999999999875
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.74 E-value=1.3e-05 Score=79.67 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=33.2
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++++++.+ +|++++|+||||||||||+++|++..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5789999999 89999999999999999999999865
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=97.71 E-value=3.1e-05 Score=67.51 Aligned_cols=24 Identities=50% Similarity=0.600 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 368999999999999999999864
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=2.3e-06 Score=82.22 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=39.1
Q ss_pred HHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 151 ~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+++++. +|++++|+|+|||||||++..|++.. .+..|++.+.+.++
T Consensus 91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~------------~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYY------------KGKGRRPLLVAADT 136 (295)
T ss_dssp CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHH------------HHTTCCEEEEECCS
T ss_pred ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHH------------HHcCCeEEEecCCc
Confidence 567777 89999999999999999999999998 66777887766554
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.3e-05 Score=73.63 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=23.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|++++|+|+||||||||+++|++.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999999986
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=9.8e-06 Score=79.61 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=23.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+++|+|++|||||||+|.|+|..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999999976
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.66 E-value=1.7e-05 Score=68.76 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=23.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|.+++|+||||||||||.++|++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999976
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=2.9e-06 Score=83.83 Aligned_cols=44 Identities=34% Similarity=0.401 Sum_probs=30.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+.++...|+...+++++++. ++|+|+||||||||+|.|.+..
T Consensus 18 v~~~~l~~~~~~k~~~~~~~~~-----I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 18 VGFANLPNQVHRKSVKKGFEFT-----LMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ---CCHHHHHHTHHHHHCCEEC-----EEECCCTTSCHHHHHHHHTTCC
T ss_pred EEeccchHHhCCeeecCCCCEE-----EEEEcCCCCCHHHHHHHHhCCC
Confidence 4555555556555555555544 4999999999999999998865
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=9.1e-05 Score=76.41 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=25.1
Q ss_pred Hhhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 153 ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
+.+.+ ++..+.|+|++||||||+||.|..
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 45556 678999999999999999999875
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=3.2e-05 Score=74.45 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=22.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+|++|||||||+|.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999865
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=3e-05 Score=74.55 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+|.+|||||||+|.|.|..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 369999999999999999999865
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.64 E-value=1e-05 Score=84.39 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=34.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCC-cce-ecCccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKW-FEDQRV 209 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G-~I~-~~g~~v 209 (391)
+|++++|+|+||||||||+++|++.+ .|++| .+. +++..+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L------------~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL------------MEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH------------HTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh------------cccCCceEEEECCcHH
Confidence 68999999999999999999999998 77776 674 666544
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=1.1e-05 Score=69.88 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=62.0
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
+......++|.+++|+++..+. ....+..++... ...++|+++|+||+|+.++.. .+........+++..+.+
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIK-SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLES 148 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEE
Confidence 3444567899999999987642 222333333222 335789999999999964321 122223455678888899
Q ss_pred EcCCccchHHHhhcccCCEEEEEecCCCcHHH
Q 016339 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174 (391)
Q Consensus 143 s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKST 174 (391)
|..++.+++++-..+.......-|+.++||||
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~gkss 180 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAEKMDGACSQGKSS 180 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTC-----CCBSC
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCcccCcCC
Confidence 99888888887666622222223788999986
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.62 E-value=9.9e-06 Score=78.80 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=39.7
Q ss_pred HHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 151 ~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+++|.+ +|++++|+|+|||||||++..|++.. .+..|++.+.+.++
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l------------~~~g~kVllid~D~ 143 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY------------AELGYKVLIAAADT 143 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH------------HHTTCCEEEEECCC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH------------HHCCCeEEEEeCCC
Confidence 4666766 78999999999999999999999988 77778888766555
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.61 E-value=2e-05 Score=68.84 Aligned_cols=105 Identities=17% Similarity=0.130 Sum_probs=59.1
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..| .....+..++..... .++++++|+||+|+.+... .+........+++..+.+|
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 158 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRR-DTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEAS 158 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hhHHHhccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEec
Confidence 344567899999999998765 223334455544443 4678999999999954321 1222334456788888899
Q ss_pred cCCccchHHHhhcc-----cCCEEEEEecCCCcHHH
Q 016339 144 VESKLGLDSLLQRL-----RDQTTVIVGPSGVGKSS 174 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-----~Ge~vaLvGpSGsGKST 174 (391)
..++.+++.+-..+ +....---+.+++||||
T Consensus 159 a~~~~gi~~l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 159 AKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHTSGGGTCC---------
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 98888877665444 11111112445899997
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=3.1e-05 Score=71.10 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|+|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 368999999999999999999976
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.61 E-value=4.7e-06 Score=86.68 Aligned_cols=49 Identities=29% Similarity=0.455 Sum_probs=41.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|.+.+...|....++.++++.++|+.++|+||||||||||+++|++..
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4556666666666788888888899999999999999999999999987
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.61 E-value=2.8e-05 Score=69.91 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|++|||||||+|.|.+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999864
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.60 E-value=4.5e-05 Score=71.67 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999976
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=4.5e-05 Score=66.81 Aligned_cols=24 Identities=42% Similarity=0.565 Sum_probs=21.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999863
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.57 E-value=8.7e-06 Score=83.85 Aligned_cols=37 Identities=27% Similarity=0.552 Sum_probs=31.1
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+...++++++.+ +| +.|+||||+|||||+++|++..
T Consensus 51 ~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 51 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp HCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred hchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh
Confidence 3445677888888 55 9999999999999999999976
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.56 E-value=2.1e-05 Score=77.73 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=38.4
Q ss_pred hcCccccccccccccccc---------CCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHL---------GEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~---------~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
.||+||+|+++||+++ + .+|+++|+| |+.+...+++++.++.
T Consensus 265 ~lS~Gqqq~l~lA~~L-a~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~ 321 (359)
T 2o5v_A 265 YASRGEGRTVALALRR-AELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP 321 (359)
T ss_dssp HCCHHHHHHHHHHHHH-HHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS
T ss_pred hCCHHHHHHHHHHHHH-HHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC
Confidence 6999999999999999 8 899999999 8889999999988764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.55 E-value=6.4e-05 Score=65.45 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~ 31 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGEN 31 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
|
| >1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=97.53 E-value=7.1e-05 Score=56.62 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=39.6
Q ss_pred EeccCC-CCCcccCCCCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEE
Q 016339 5 VQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (391)
Q Consensus 5 ~~~~~~-~~~~~~~~~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (391)
|-.+-. +-+.... .+|..++|.++|+|++....+.|||+|.++..++.+..|.|+
T Consensus 12 Vi~~lg~~~y~V~~-~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~ 67 (71)
T 1ah9_A 12 VLETLPNTMFRVEL-ENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp EEEECSSSEEEEEE-TTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEEC
T ss_pred EEEEeCCcEEEEEE-CCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEE
Confidence 333444 4444432 356789999999999888899999999998654456677765
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=2.5e-05 Score=75.07 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=24.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+|||||||||+++.|++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999987
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=4.7e-05 Score=65.56 Aligned_cols=28 Identities=32% Similarity=0.643 Sum_probs=23.1
Q ss_pred hhcccCCEEEEEecCCCcHHHHHHHHhc
Q 016339 154 LQRLRDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 154 s~~i~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+.+...+++|+|||||||||++.+|.-
T Consensus 18 ~i~f~~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEcCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3444556899999999999999999873
|
| >3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=97.48 E-value=7.4e-05 Score=57.64 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=42.3
Q ss_pred eEeccCCCCCcccCCCCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEE
Q 016339 4 IVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (391)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (391)
++..-|.+.+.+.- .+|..++|.++|++++.+..++|||+|.++..++...+|-|.
T Consensus 20 Vik~l~n~~f~V~l-~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 20 VVEPLPNAMFRIEL-ENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp EEEEETTTEEEEEE-TTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred EEEEcCCCEEEEEe-CCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEE
Confidence 34444455444332 467789999999999988899999999999877777777665
|
| >2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.48 E-value=4.3e-05 Score=63.52 Aligned_cols=48 Identities=31% Similarity=0.417 Sum_probs=41.9
Q ss_pred CCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeecccc
Q 016339 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRST 67 (391)
Q Consensus 19 ~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~ 67 (391)
.+|..++|.++|+|++ ...+.|||+|.++..++.+..|.|+.+++|..
T Consensus 52 ~dG~~~l~~i~GK~Rk-~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~~ 99 (117)
T 2oqk_A 52 FDGQKRLCHIRGKMRK-KVWVNPGDIVLVSLRDFQDSKGDIILKYTPDE 99 (117)
T ss_dssp TTSCEEEEECCHHHHH-HSCCCTTCEEEEEECTTCTTEEEEEEECCHHH
T ss_pred CCCCEEEEEEcCceec-CCcCCCCCEEEEEEEcCCCCeEEEEEEechHH
Confidence 4578899999999998 78899999999998766777999999999863
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=5.6e-05 Score=67.25 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=30.8
Q ss_pred cchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++++++..+.-.++|+|++|||||||+|.+.+..
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~ 49 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDR 49 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 578889888866679999999999999999998753
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.44 E-value=5.4e-05 Score=67.92 Aligned_cols=26 Identities=46% Similarity=0.650 Sum_probs=24.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|+||||||||||.+.|+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999999998765
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=97.44 E-value=9.8e-05 Score=69.22 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999875
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00013 Score=68.94 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=7.4e-05 Score=66.95 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=24.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|+|+||||||||.+.|++..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999999999976
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.41 E-value=6.6e-05 Score=74.19 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+|+||||||||+|.|+|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999976
|
| >1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W | Back alignment and structure |
|---|
Probab=97.41 E-value=5.9e-05 Score=57.07 Aligned_cols=55 Identities=27% Similarity=0.355 Sum_probs=39.9
Q ss_pred EeccCC-CCCcccCCCCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEE
Q 016339 5 VQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (391)
Q Consensus 5 ~~~~~~-~~~~~~~~~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (391)
|-.+-. +-+..+. .+|..++|.+||+|++.+..+.|||+|.++..++.+..|.|+
T Consensus 13 Vi~~lg~~~y~V~~-~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~ 68 (71)
T 1hr0_W 13 VTEALPNATFRVKL-DSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIV 68 (71)
T ss_dssp CCCCCTTTBCCCEE-SSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEEC
T ss_pred EEEEeCCcEEEEEE-CCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEE
Confidence 334444 4455432 346778999999999888899999999999765556677664
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=7.2e-05 Score=64.30 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+||||||||+|.|.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00012 Score=68.82 Aligned_cols=23 Identities=52% Similarity=0.752 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998865
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=68.95 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++|++|+|||||+|.|.+..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999865
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.38 E-value=9.9e-05 Score=72.99 Aligned_cols=49 Identities=35% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
|..++|+|.||||||||+|+|.+... ......-....|..|.+.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~-~v~~~p~tTi~p~~g~v~~~~~r 50 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPR 50 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceECceEEEEecCCcc
Confidence 45789999999999999999998531 00000011125666766665544
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00013 Score=73.06 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHH--hcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINAL--RSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L--~gl~ 183 (391)
+|++++|+||||||||||++.| .+..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~ 204 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQI 204 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhcc
Confidence 7999999999999999999955 4554
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=8.3e-05 Score=74.34 Aligned_cols=52 Identities=25% Similarity=0.204 Sum_probs=31.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+..++|+|+||||||||+|+|+|.... ..........|..|.+.+.+.++.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~-~~~~p~tTi~p~~g~v~v~~~r~~ 72 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQAS-AENFPFCTIDPNESRVPVPDERFD 72 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCccccCceeEEEEECCccce
Confidence 5778999999999999999999987310 000000112556676666554443
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0001 Score=64.51 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=58.6
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~~--~~~~~~~~~~g~~~v~~s~ 144 (391)
....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+.... .........+++..+.+|.
T Consensus 82 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (196)
T 3tkl_A 82 TSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 160 (196)
T ss_dssp HHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHHhhCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 344567999999999987642 22333444433333 37899999999999765311 1222344567889999999
Q ss_pred CCccchHHHhhcc----cCCEEEEEecCCCcHHH
Q 016339 145 ESKLGLDSLLQRL----RDQTTVIVGPSGVGKSS 174 (391)
Q Consensus 145 ~~~~~L~~ls~~i----~Ge~vaLvGpSGsGKST 174 (391)
.++.+++.+-..+ ....----.++|++|||
T Consensus 161 ~~g~gv~~l~~~l~~~i~~~~~~~~~~~~~~~s~ 194 (196)
T 3tkl_A 161 KNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSN 194 (196)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC-------------
T ss_pred CCCCCHHHHHHHHHHHHHHHhccccccCCCccCC
Confidence 8888888765554 11111223467788876
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.35 E-value=1.7e-05 Score=87.08 Aligned_cols=109 Identities=11% Similarity=-0.003 Sum_probs=70.0
Q ss_pred cCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCc---------ccchHHHHhCChhHH-hhhch
Q 016339 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP---------GFNQPSLLKVTKQSL-AQTFP 261 (391)
Q Consensus 192 ~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtp---------g~~~~~l~~~~~~~l-~~~~p 261 (391)
...+.|..|.|.++|.++..+.... ...++.++. .......+.. ......+..+++..+ +++.+
T Consensus 389 g~rl~~~~~~V~i~G~~i~~~~~~~-----v~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~~ 462 (916)
T 3pih_A 389 GRRLNREALSVKINGLNIHEFTELS-----ISEELEFLK-NLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSA 462 (916)
T ss_dssp SCCBCTTGGGEEETTEEHHHHHHSB-----HHHHHHHHH-SCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSBG
T ss_pred cccCChHhcCcEECCccHHHhhhCC-----HHHHHHHHH-hccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCCc
Confidence 3445899999999999886554321 112222211 1111111110 001123445565544 46667
Q ss_pred hHHhhcCcccccccccccccccCCCc--EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 262 EIKEMLKANEPAKCSFNNCLHLGEPG--CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 262 ~~~~~LSgGq~qr~~iaralh~~eP~--~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
. .|||||+||++||+++ ..+|+ ++|+| |+.....++++|++++..
T Consensus 463 ~---~LSGGe~QRv~LAraL-~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~ 515 (916)
T 3pih_A 463 T---TLSGGESQRIRLATQI-GSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL 515 (916)
T ss_dssp G---GCCHHHHHHHHHHHHH-HTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT
T ss_pred c---cCCHHHHHHHHHHHHH-hhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc
Confidence 7 9999999999999999 88776 99999 788999999999998754
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=8.3e-05 Score=67.25 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=28.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCccee
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~ 204 (391)
+.+++|+|||||||||+.++|++.+. +..++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g---------~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ---------WHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT---------CEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---------CCcccCcceee
Confidence 46899999999999999999987541 11566777765
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00017 Score=68.33 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00016 Score=67.68 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=21.8
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.|..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999865
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.31 E-value=9.9e-05 Score=65.10 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=22.0
Q ss_pred chHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++++++..+.-.++|+|++|||||||+|.+.+..
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 56778877766689999999999999999999754
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00011 Score=72.93 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=24.7
Q ss_pred hhcc--cC-CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 154 LQRL--RD-QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 154 s~~i--~G-e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|.+ .| -.++|||.++||||||+|+|.|..
T Consensus 64 ~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 64 GFDVARTGVASVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp TTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBC
T ss_pred CceEeecCCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 4555 34 379999999999999999999864
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00011 Score=74.51 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.|..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999854
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00019 Score=67.23 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999865
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.28 E-value=9.6e-05 Score=74.27 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=26.2
Q ss_pred cc-cCCEEEEEecCCCcHHHHHHHHhcCCCC
Q 016339 156 RL-RDQTTVIVGPSGVGKSSLINALRSSPHA 185 (391)
Q Consensus 156 ~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~ 185 (391)
.+ .|++++|+||||||||||+++|.++..+
T Consensus 22 ~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 22 GFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 35 4899999999999999999999998743
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00014 Score=76.33 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=22.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-+++|+|++|+|||||||.|.|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 468999999999999999999975
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=9.9e-06 Score=88.22 Aligned_cols=131 Identities=13% Similarity=-0.007 Sum_probs=82.3
Q ss_pred CCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCC---------ccc
Q 016339 168 SGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG---------YLA 238 (391)
Q Consensus 168 SGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~---------~l~ 238 (391)
|..||+++.+.+.....+ .|....+.|.+|++.++|.++..+.... ....+.++...... .+.
T Consensus 271 ~~~~~~~~~~~~~~~~Cp---~C~G~Rl~~~~~~v~~~G~~I~~~~~~~-----v~e~~~~~~~~~~~~~~~~~~~~~~~ 342 (842)
T 2vf7_A 271 SASMKKRVQGYMISEECP---LCHGKRLRQEALNVTFAGLDITELSRLP-----LARVSELLRPYAEEREPGHAERVKNR 342 (842)
T ss_dssp CHHHHHHHGGGCEEEECS---SSSSSCBCTTTTTCBBTTBCHHHHHHSB-----HHHHHHHHHHHHTTCSSCSTTSSSSC
T ss_pred CHHHHHHHHhhccccCCC---CCCCCccCHHHhhcccCCccHHHHhhcC-----HHHHHHHHHhhhhhhhhcccchhhcc
Confidence 556899998887764321 2334556889999999999886643321 11111111111000 000
Q ss_pred CC-cc----------cchHHHHhCChhHH-hhhchhHHhhcCcccccccccccccccCCC--cEEEec------CHHHHH
Q 016339 239 DT-PG----------FNQPSLLKVTKQSL-AQTFPEIKEMLKANEPAKCSFNNCLHLGEP--GCVVKG------DWERYQ 298 (391)
Q Consensus 239 Dt-pg----------~~~~~l~~~~~~~l-~~~~p~~~~~LSgGq~qr~~iaralh~~eP--~~lllD------D~~~~~ 298 (391)
.. .. .+...+..+++..+ +++.+. .|||||+||++||++| ..+| .++|+| |+...+
T Consensus 343 ~~~~~i~~~i~~ei~~rl~~L~~vGL~~l~l~r~~~---tLSGGe~QRV~LA~aL-~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 343 PEQAIALQRMAADLVKRLDVLLHLGLGYLGLDRSTP---TLSPGELQRLRLATQL-YSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTCTTSBTTCBGG---GSCHHHHHHHHHHHHT-TTCCCSCEEEEECTTTTCCGGGHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCcCCccCCcC---cCCHHHHHHHHHHHHH-hhCCCCeEEEeeCccccCCHHHHH
Confidence 00 00 00112445566544 566666 9999999999999999 8888 499999 788889
Q ss_pred HHHHHHHHHHHH
Q 016339 299 YYFQLLDEIRIR 310 (391)
Q Consensus 299 ~~~~ll~el~~~ 310 (391)
.+++++++|+..
T Consensus 419 ~L~~~l~~L~~~ 430 (842)
T 2vf7_A 419 ALLSALENLKRG 430 (842)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 999999998754
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00018 Score=66.67 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.8
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00017 Score=62.59 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47999999999999999999864
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0017 Score=56.62 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=59.4
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHhC-----------CCCEEEEEeCCCCCCHH---HHHHHHH--H
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST-----------GIPLTLALNKVELVDEE---VLNTWKS--R 131 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~-----------~~~~~lvlnK~Dl~~~~---~~~~~~~--~ 131 (391)
.+....+.++|.+++|+++..+ .....+..++...... ++++++|+||+|+.+.. +...... .
T Consensus 78 ~~~~~~~~~~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 156 (199)
T 4bas_A 78 GLWETYYDNIDAVIFVVDSSDH-LRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT 156 (199)
T ss_dssp GGGGGGCTTCSEEEEEEETTCG-GGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcH-HHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh
Confidence 3444557899999999999865 3344455555444443 89999999999998763 2322211 1
Q ss_pred H-HhcCCeeEEEEcCCccchHHHhhcc
Q 016339 132 L-HTWGYEPLFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 132 ~-~~~g~~~v~~s~~~~~~L~~ls~~i 157 (391)
+ ...++..+.+|..++.+++.+-..+
T Consensus 157 ~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (199)
T 4bas_A 157 LMGDHPFVIFASNGLKGTGVHEGFSWL 183 (199)
T ss_dssp HHTTSCEEEEECBTTTTBTHHHHHHHH
T ss_pred hccCCeeEEEEeeCCCccCHHHHHHHH
Confidence 1 3456677888888888887765544
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00016 Score=60.95 Aligned_cols=54 Identities=37% Similarity=0.412 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc---c
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY---L 237 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l 237 (391)
.++|+|++|||||||+|.+.+.. .......++ ++...........+. +
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~-------------------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~l 53 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR-------------------------SAVVADVPG----VTRDLKEGVVETDRGRFLL 53 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC-------------------------C---------------CCEEEEEEETTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-------------------------eeeccCCCC----ceecceEEEEEeCCceEEE
Q ss_pred cCCccc
Q 016339 238 ADTPGF 243 (391)
Q Consensus 238 ~Dtpg~ 243 (391)
.|+||.
T Consensus 54 ~Dt~G~ 59 (161)
T 2dyk_A 54 VDTGGL 59 (161)
T ss_dssp EECGGG
T ss_pred EECCCC
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00013 Score=63.80 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+||||||||+|.|++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00013 Score=65.10 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+++|+|||||||||+.+.|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999983
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00014 Score=63.56 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=24.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+|++||||||+.+.|++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999865
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00016 Score=72.05 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=41.8
Q ss_pred hcCCeeEEEEcCC-ccchH--------------HHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 134 TWGYEPLFCSVES-KLGLD--------------SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 134 ~~g~~~v~~s~~~-~~~L~--------------~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.|+++++.|.. ...++ |+++.+ +|+.++|+||||||||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 5678888888854 34666 777777 89999999999999999999998864
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00017 Score=65.21 Aligned_cols=28 Identities=32% Similarity=0.643 Sum_probs=23.0
Q ss_pred hhcccCCEEEEEecCCCcHHHHHHHHhc
Q 016339 154 LQRLRDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 154 s~~i~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+.+...+++|+|||||||||++.+|.-
T Consensus 18 ~i~f~~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3444556999999999999999999863
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00016 Score=72.93 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00017 Score=66.41 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=25.2
Q ss_pred ccchHHHhhcc----cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i----~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.-|.++++.+ +|.+++|.|++||||||+++.|...+
T Consensus 10 ~~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 10 GVDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp ----------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34566667666 68999999999999999999999876
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00011 Score=63.45 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=41.9
Q ss_pred hhhchhHHhhcCcccccccccc------cccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 257 AQTFPEIKEMLKANEPAKCSFN------NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 257 ~~~~p~~~~~LSgGq~qr~~ia------ralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.+..+. .|||||+||++|| +++ +.+|+++++| |+.....+.+++.++..
T Consensus 51 ~~~~~~---~LSgGe~qrv~lA~~Lalaral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 111 (148)
T 1f2t_B 51 KERPLT---FLSGGERIALGLAFRLAMSLYL-AGEISLLILDEPTPYLDEERRRKLITIMERYLK 111 (148)
T ss_dssp EEECGG---GSCHHHHHHHHHHHHHHHHHHH-HSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG
T ss_pred ccCChh---HCCHHHHHHHHHHhhhHHHHHH-cCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc
Confidence 345566 9999999999876 888 8999999999 88999999999988754
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=6.4e-05 Score=67.84 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|+|++||||||+.+.|.+.+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999999877
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00054 Score=60.67 Aligned_cols=88 Identities=11% Similarity=0.149 Sum_probs=56.2
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEEc
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s~ 144 (391)
+....+.++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+... .+........+|+..+.+|.
T Consensus 85 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (213)
T 3cph_A 85 ITTAYYRGAMGIILVYDVTDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSA 163 (213)
T ss_dssp CCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBT
T ss_pred HHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeC
Confidence 3445678999999999987642 23334445443333 3789999999999953211 11122233456888899999
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 164 ~~~~gi~~l~~~l 176 (213)
T 3cph_A 164 KNDDNVNEIFFTL 176 (213)
T ss_dssp TTTBSSHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8888777665443
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00016 Score=69.96 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=36.0
Q ss_pred EcCCccchHHHhhcc-cCCE--EEEEecCCCcHHHHHHHHhcCC
Q 016339 143 SVESKLGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~--vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++..+++.++..+ .|++ +.|.||+|+||||++++|++..
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 467788999999988 6776 9999999999999999999875
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.14 E-value=2.3e-05 Score=75.32 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=35.3
Q ss_pred HhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 153 ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
+++..++++++++|++||||||+++.|++.. .+..|++.+.+.+
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~------------~~~g~~v~l~~~D 135 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFY------------KKKGFKVGLVGAD 135 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHHH------------HHTTCCEEEEECC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHH------------HHCCCeEEEEecC
Confidence 6666678999999999999999999999987 5556666654444
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00019 Score=63.95 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0002 Score=76.16 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++..++|+|++|||||||++.|++..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhc
Confidence 57899999999999999999999765
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00036 Score=63.31 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc---c
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY---L 237 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l 237 (391)
.++|+|++|||||||+|.|.+.. -.....+. +|+.+.......... +
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~--------------------------~~~~~~~~----~t~~~~~~~~~~~~~~~~l 80 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN--------------------------VDVQSYSF----TTKNLYVGHFDHKLNKYQI 80 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC--------------------------EEEECC---------CEEEEEEEETTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--------------------------CccCCCCC----cceeeeeeeeecCCCeEEE
Q ss_pred cCCccc
Q 016339 238 ADTPGF 243 (391)
Q Consensus 238 ~Dtpg~ 243 (391)
.||||.
T Consensus 81 ~DtpG~ 86 (228)
T 2qu8_A 81 IDTPGL 86 (228)
T ss_dssp EECTTT
T ss_pred EECCCC
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00016 Score=73.91 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=20.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|-.++|+|++|||||||+|.|.+..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35569999999999999999999864
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0012 Score=56.58 Aligned_cols=88 Identities=19% Similarity=0.247 Sum_probs=56.5
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..|. ....+..++..... .++|+++|+||+|+.++.+ .+........+++..+.+|
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKA-SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETS 154 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 3445678999999999987652 23334455544443 6789999999999985321 1122233445678888888
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 155 a~~~~gi~~l~~~l 168 (180)
T 2g6b_A 155 AKTGLNVDLAFTAI 168 (180)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88888777765443
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0018 Score=60.17 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=56.4
Q ss_pred ccceeEEEEEecCC-CCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHHHHHHHHHHHh-cCCeeEEEEcCCccc
Q 016339 76 NVDHLLLLFSMDQP-KLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLHT-WGYEPLFCSVESKLG 149 (391)
Q Consensus 76 nvD~~liv~s~~~p-~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~-~g~~~v~~s~~~~~~ 149 (391)
|+|.+++|+++..| ..+...+.+++.... ..++|+++|.||+|+.+...++........ .++..+.+|..++.+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 89999999999875 245556666655443 357999999999999876555433333333 477888889888888
Q ss_pred hHHHhhc
Q 016339 150 LDSLLQR 156 (391)
Q Consensus 150 L~~ls~~ 156 (391)
++.+-..
T Consensus 242 v~elf~~ 248 (255)
T 3c5h_A 242 VDLAFST 248 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00018 Score=63.24 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=24.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|+|++||||||+.+.|+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999876
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00035 Score=61.58 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=24.5
Q ss_pred HHhhcc-cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 152 ~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
++|+.. ++..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 355666 6889999999999999999999876
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0016 Score=56.29 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=57.0
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCe
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYE 138 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~~~~~~~~~-----~~~g~~ 138 (391)
.+....+.++|.+++|+++..+ .....+..++.... ..++++++|+||+|+.+......+...+ ...++.
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 158 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDR-ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH 158 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCT-TTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceE
Confidence 3445567899999999998875 34455555554443 3688999999999997642122222222 234456
Q ss_pred eEEEEcCCccchHHHhhc
Q 016339 139 PLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~ 156 (391)
.+.+|..++.+++.+-..
T Consensus 159 ~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 159 IQACCALTGEGLCQGLEW 176 (181)
T ss_dssp EEECBTTTTBTHHHHHHH
T ss_pred EEEccCCCCcCHHHHHHH
Confidence 777888877777776443
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00034 Score=59.97 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00031 Score=62.16 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+|+||||||||++.|++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999864
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00027 Score=71.30 Aligned_cols=23 Identities=48% Similarity=0.654 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||+|.|.|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00028 Score=62.82 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00031 Score=62.92 Aligned_cols=23 Identities=48% Similarity=0.704 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+||||||||||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999997543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00018 Score=72.52 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=37.4
Q ss_pred HHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 151 ~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+++++. ++++++|+|+|||||||++..|++.+ .+..|.+.+.+.++
T Consensus 91 ~~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l------------~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYY------------KGKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC-SSEEEEEECCTTSSHHHHHHHHHHHH------------HTTTCCEEEEECCS
T ss_pred ccccCC-CCeEEEEECCCCCCHHHHHHHHHHHH------------HHcCCeEEEeeccc
Confidence 456666 88999999999999999999999988 66667776655443
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00039 Score=58.87 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998765
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00041 Score=60.11 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+.|+|+|||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999765
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00032 Score=61.26 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
+|.+++|+|++||||||+.+.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999984
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00045 Score=60.24 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00045 Score=58.90 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999999865
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0017 Score=56.58 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=56.0
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh------CCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcC
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWG 136 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~------~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g 136 (391)
.+.+..+.++|.+++|+++..+ .+...+..++..... .++++++|+||+|+.+....+.+...+. ..+
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDR-LRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKP 160 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCH-HHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSC
T ss_pred HHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCc
Confidence 3445567899999999998764 222333344433332 4789999999999976432233323331 235
Q ss_pred CeeEEEEcCCccchHHHhhcc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i 157 (391)
+..+.+|..++.+++.+-..+
T Consensus 161 ~~~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 161 WHICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp EEEEECBTTTTBTHHHHHHHH
T ss_pred eEEEEccCCCCcCHHHHHHHH
Confidence 667788888877777765443
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0011 Score=57.82 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=59.0
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
.+....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+... .+........+|+..+.+
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQE-SFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA 164 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhHHHhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 34455678999999999987642 23334455544443 4789999999999975421 112223344568888999
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 165 Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 165 SAKENINVKQVFERL 179 (189)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 998888887765443
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0024 Score=57.41 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0014 Score=56.15 Aligned_cols=88 Identities=11% Similarity=0.147 Sum_probs=57.7
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..+ .....+..++..... .++++++|+||+|+.+..+ .+.........++..+.+|
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQ-ASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETS 155 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hhHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEE
Confidence 344557799999999998654 223444555544443 3678999999999975421 1223334456788888888
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 156 a~~g~gi~~l~~~l 169 (181)
T 2efe_B 156 AKTATNVKEIFYEI 169 (181)
T ss_dssp SSSCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88777777665443
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00045 Score=58.06 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0018 Score=54.71 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=57.0
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHH---hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~---~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
......++|.+++|+++..+. ....+..++.... ..++|+++|+||+|+.++.+ .+........+++..+.+|.
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDED-SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSA 150 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBT
T ss_pred HHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence 344567999999999987642 3334445544333 25789999999999975321 12222344567888899999
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++.+-..
T Consensus 151 ~~~~gi~~l~~~ 162 (170)
T 1z08_A 151 KQNKGIEELFLD 162 (170)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888888776544
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00071 Score=61.44 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=25.9
Q ss_pred cchHHH-hhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 148 LGLDSL-LQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 148 ~~L~~l-s~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
..|+.+ .--+ +|++++|+||||||||||+..++.
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 356665 3334 899999999999999999665554
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00052 Score=58.10 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0021 Score=55.84 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=56.7
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCee
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEP 139 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~-----~~~g~~~ 139 (391)
+.+..+.++|.+++|+++..+ -+...+..++..... .++++++|+||+|+.+....+.+...+ ...++..
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 154 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDR-ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI 154 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCT-TTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEE
T ss_pred HHHHHhcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEE
Confidence 344557899999999999876 345555555554443 588999999999997632222222222 2345566
Q ss_pred EEEEcCCccchHHHhhcc
Q 016339 140 LFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i 157 (391)
+.+|..++.+++++-..+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l 172 (187)
T 1zj6_A 155 QACCALTGEGLCQGLEWM 172 (187)
T ss_dssp EECBTTTTBTHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHH
Confidence 777777777776654433
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00047 Score=58.26 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00051 Score=57.55 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++|++|||||||+|.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00055 Score=58.11 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47999999999999999998764
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00048 Score=60.10 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999865
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00054 Score=58.01 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999999764
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00054 Score=58.40 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.6
Q ss_pred CEEEEEecCCCcHHHHHHHH
Q 016339 160 QTTVIVGPSGVGKSSLINAL 179 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L 179 (391)
.+++|+||+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0012 Score=57.04 Aligned_cols=88 Identities=11% Similarity=0.170 Sum_probs=53.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..|. +...+..++..... .++|+++|+||+|+.+..+ .+........+++..+.+|
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 151 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEK-SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred hHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 3445577999999999987652 33445556554443 4789999999999975311 1122233445678888888
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 152 a~~~~~i~~l~~~l 165 (183)
T 2fu5_C 152 AKANINVENAFFTL 165 (183)
T ss_dssp C---CCHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88877777665443
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00057 Score=58.48 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999865
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00057 Score=57.48 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0023 Score=54.34 Aligned_cols=86 Identities=9% Similarity=0.148 Sum_probs=55.7
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
+...+++|.+++|+++..+. +...+..++..... .++|+++|+||+|+.+..+ .+........+++..+.+|.
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 150 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRG-SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSA 150 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHH-HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBT
T ss_pred HhhcccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEec
Confidence 34567899999999987642 33444555544443 3789999999999975421 11112233456788889999
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 151 ~~g~gi~~l~~~l 163 (175)
T 2nzj_A 151 TLQHNVAELFEGV 163 (175)
T ss_dssp TTTBSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8888888765443
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00096 Score=56.90 Aligned_cols=88 Identities=9% Similarity=0.212 Sum_probs=57.5
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHH---hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~---~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
.....+.++|.+++|+++..|. ....+..++.... ..++|+++|+||+|+.++.+ ..........+++..+.+|
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS 157 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEB
T ss_pred HHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 3445578999999999987642 2233334443332 35788999999999975421 1223334456688888999
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 158 a~~~~~i~~l~~~l 171 (179)
T 2y8e_A 158 AKAGYNVKQLFRRV 171 (179)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88888887765443
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0044 Score=52.37 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=55.9
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCe
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYE 138 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~-----~~~g~~ 138 (391)
.+....+.++|.+++|+++..|. ....+..++..... .++|+++|+||+|+.+......+...+ ...++.
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRD-RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQ 144 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCT-THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEE
T ss_pred HHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceE
Confidence 33445677999999999987763 34444444443332 588999999999998753222232222 223456
Q ss_pred eEEEEcCCccchHHHhhc
Q 016339 139 PLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~ 156 (391)
.+.+|..++.+++.+-..
T Consensus 145 ~~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 145 IFKTSATKGTGLDEAMEW 162 (171)
T ss_dssp EEECCTTTCTTHHHHHHH
T ss_pred EEECcCCCCcCHHHHHHH
Confidence 677777777777665433
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00053 Score=58.92 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00059 Score=57.76 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999865
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00064 Score=59.23 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0012 Score=58.75 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||++.|.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00092 Score=58.53 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCC----cceecCccc
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG----SKWFEDQRV 209 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G----~I~~~g~~v 209 (391)
.++|+|++|||||||+|.+.+..-.... .|+.| .+.+++..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEE-------SPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCC-------CTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCc-------CCCcceEEEEEEECCEEE
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0008 Score=58.41 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=59.1
Q ss_pred cccccccccceeEEEEEecCCCC-----CHHHHHHHHHHH--HhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKL-----EPFALTRFLVEA--ESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPL 140 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~-----~~~~l~r~L~~a--~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v 140 (391)
+.+....++|.+++|+++..|.. ....+.+++... ...++|+++|.||+|+.+....+.....+..+++ ..+
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVL 169 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEE
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEE
Confidence 33446789999999999874311 122334444322 1258899999999999765333344455667788 888
Q ss_pred EEEcCCccchHHHhhcc
Q 016339 141 FCSVESKLGLDSLLQRL 157 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i 157 (391)
.+|..++.+++.+-..+
T Consensus 170 ~~Sa~~~~gv~~l~~~l 186 (198)
T 3t1o_A 170 EAVATEGKGVFETLKEV 186 (198)
T ss_dssp ECBGGGTBTHHHHHHHH
T ss_pred EEecCCCcCHHHHHHHH
Confidence 89998888887765443
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0006 Score=57.59 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00068 Score=59.33 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.4
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.++.|+|++||||||+.+.|+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999997643
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0006 Score=57.50 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0006 Score=57.80 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00063 Score=58.19 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00061 Score=58.26 Aligned_cols=21 Identities=43% Similarity=0.754 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|++|||||||+|.|.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00018 Score=73.41 Aligned_cols=26 Identities=46% Similarity=0.562 Sum_probs=22.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|-.++|+|++|||||||+|.|++..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35579999999999999999999853
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00097 Score=56.89 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=57.0
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
.+..+.++|.+++|+++..+ .....+..++..... .++++++|+||+|+.++.+ .+........+++..+.+|.
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRR-STYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASA 159 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHhccCCEEEEEEeCcCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 34456799999999998765 223334444443333 5788999999999965321 12233445567888888898
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++.+-..
T Consensus 160 ~~~~gi~~l~~~ 171 (179)
T 1z0f_A 160 KTGENVEDAFLE 171 (179)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888877776443
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0026 Score=53.61 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=53.0
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
+......++|.+++|+++..|. ....+..++..... .++|+++|.||+|+.+..+ .+........+++..+.+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T 3q72_A 65 LPGHCMAMGDAYVIVYSVTDKG-SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIET 143 (166)
T ss_dssp --------CCEEEEEEETTCHH-HHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhhhhhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEe
Confidence 3344567999999999988652 33445555444433 4789999999999975421 111123344578888889
Q ss_pred EcCCccchHHHhhc
Q 016339 143 SVESKLGLDSLLQR 156 (391)
Q Consensus 143 s~~~~~~L~~ls~~ 156 (391)
|..++.+++.+-..
T Consensus 144 Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 144 SAALHHNVQALFEG 157 (166)
T ss_dssp BGGGTBSHHHHHHH
T ss_pred ccCCCCCHHHHHHH
Confidence 99888888776543
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0008 Score=57.59 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.-.++|+|++|||||||+|.|.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34579999999999999999999854
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00059 Score=58.82 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=21.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|++|||||||+|.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~ 42 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGE 42 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998643
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00078 Score=59.58 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=23.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999998765
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00065 Score=59.02 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0013 Score=56.80 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=56.2
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
+....+.++|.+++|+++..|. ....+..++..... .++|+++|+||+|+.+... .+.........|+..+.+
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQ-SFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence 3445678999999999987642 22333444433332 5889999999999975321 122223344567888888
Q ss_pred EcCCccchHHHhhc
Q 016339 143 SVESKLGLDSLLQR 156 (391)
Q Consensus 143 s~~~~~~L~~ls~~ 156 (391)
|..++.+++.+-..
T Consensus 165 Sa~~~~~v~~l~~~ 178 (195)
T 3bc1_A 165 SAANGTNISHAIEM 178 (195)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 88888777766443
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00066 Score=58.10 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998764
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0018 Score=57.41 Aligned_cols=89 Identities=15% Similarity=0.233 Sum_probs=54.9
Q ss_pred cccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHHh--CCCCEEEEEeCCCCCCHHH----------HHHHHHHHH
Q 016339 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEV----------LNTWKSRLH 133 (391)
Q Consensus 67 ~~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~~--~~~~~~lvlnK~Dl~~~~~----------~~~~~~~~~ 133 (391)
..+....+.++|.+++|+++..|. ....+. .++..... .++|+++|.||+|+.+... .+.......
T Consensus 71 ~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~ 149 (212)
T 2j0v_A 71 SRLRPLSYRGADIFVLAFSLISKA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK 149 (212)
T ss_dssp CC--CGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence 344455678999999999987652 222232 44444443 3889999999999965432 112222334
Q ss_pred hcCC-eeEEEEcCCccchHHHhhc
Q 016339 134 TWGY-EPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 134 ~~g~-~~v~~s~~~~~~L~~ls~~ 156 (391)
.+|+ ..+.+|..++.+++.+-..
T Consensus 150 ~~~~~~~~~~Sa~~g~gi~~l~~~ 173 (212)
T 2j0v_A 150 QIGAAAYIECSSKTQQNVKAVFDT 173 (212)
T ss_dssp HHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HcCCceEEEccCCCCCCHHHHHHH
Confidence 5565 6777787777777665443
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0017 Score=56.93 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=59.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+..+ .+........+++..+.+|
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 166 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQD-SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETS 166 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECB
T ss_pred hhHHhhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 3445678999999999987652 33445555544443 3789999999999974321 2233344556788888888
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 167 a~~~~gi~~l~~~l 180 (192)
T 2fg5_A 167 AKNAINIEELFQGI 180 (192)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCcCHHHHHHHH
Confidence 88887777765444
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0017 Score=56.75 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=57.0
Q ss_pred cccccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHHh--CCCCEEEEEeCCCCCCHHHH--------------HH
Q 016339 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL--------------NT 127 (391)
Q Consensus 65 R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~--------------~~ 127 (391)
+...+.+..+.++|.+++|+++..|. ....+. .++..... .++|+++|+||+|+.+.... +.
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 78 DYDRLRPLSYPMTDVFLICFSVVNPA-SFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp SSTTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH
T ss_pred chhHHHHHhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHH
Confidence 33344556678999999999987642 222332 44444443 38999999999999764211 11
Q ss_pred HHHHHHhcCC-eeEEEEcCCccchHHHhhc
Q 016339 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 128 ~~~~~~~~g~-~~v~~s~~~~~~L~~ls~~ 156 (391)
.......+++ ..+.+|..++.+++.+-..
T Consensus 157 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 186 (194)
T 2atx_A 157 GQKLAKEIGACCYVECSALTQKGLKTVFDE 186 (194)
T ss_dssp HHHHHHHHTCSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeeCCCCCCHHHHHHH
Confidence 1223344566 6777888877777766443
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0007 Score=57.15 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999754
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00072 Score=66.56 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=30.5
Q ss_pred cchHHHhhcc-cCCE--EEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~--vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++.+++.+ +|+. ++|+|++||||||+.++|++..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3577788888 6777 9999999999999999998754
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00069 Score=58.47 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999754
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00041 Score=61.88 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+|++||||||+++.|...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0019 Score=55.89 Aligned_cols=88 Identities=17% Similarity=0.104 Sum_probs=55.8
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCee
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEP 139 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g~~~ 139 (391)
..+..+.++|.+++|+++..|. +...+..++..... .++|+++|+||+|+.+....+.....+. ..++..
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (186)
T 1ksh_A 78 YWRNYFESTDGLIWVVDSADRQ-RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRI 156 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEE
Confidence 3445678999999999987652 33444444443332 5789999999999976533333222221 234566
Q ss_pred EEEEcCCccchHHHhhcc
Q 016339 140 LFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i 157 (391)
+.+|..++.+++++-..+
T Consensus 157 ~~~Sa~~~~gi~~l~~~l 174 (186)
T 1ksh_A 157 QGCSAVTGEDLLPGIDWL 174 (186)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHH
Confidence 777877777777664443
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0019 Score=56.82 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=57.9
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+... .+........+|+..+.+|
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEE-SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS 151 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred hHHHhhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence 3445678999999999987652 33344555544443 5789999999999976421 1222233445688888888
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 152 a~~~~gi~~l~~~l 165 (203)
T 1zbd_A 152 AKDNINVKQTFERL 165 (203)
T ss_dssp TTTTBSSHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88877777654433
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0023 Score=54.58 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=58.3
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES--TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~--~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
.+......++|.+++|+++..| .....+..++..... .++|+++|+||+|+.+... ..........+++..+.+|
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (181)
T 3tw8_B 73 TITSTYYRGTHGVIVVYDVTSA-ESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 151 (181)
T ss_dssp SCCGGGGTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECB
T ss_pred hhHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEE
Confidence 3445567899999999998765 233344455544433 3588999999999865421 1222234455688889999
Q ss_pred cCCccchHHHhhc
Q 016339 144 VESKLGLDSLLQR 156 (391)
Q Consensus 144 ~~~~~~L~~ls~~ 156 (391)
..++.+++.+-..
T Consensus 152 a~~~~gi~~l~~~ 164 (181)
T 3tw8_B 152 AKENVNVEEMFNC 164 (181)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 9888888776443
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00079 Score=57.45 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00033 Score=71.35 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=30.1
Q ss_pred cchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++.+.-.++|+.++|+|+||+|||||+|.|+...
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 356666555599999999999999999999998764
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00075 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0015 Score=57.65 Aligned_cols=88 Identities=20% Similarity=0.326 Sum_probs=55.6
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHH-HHHHHHHHh--CCCCEEEEEeCCCCCCHHHHH--------------HHHH
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEEVLN--------------TWKS 130 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l-~r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~~--------------~~~~ 130 (391)
.+....+.++|.+++|+++..+. ....+ ..++..+.. .++|+++|+||+|+.+..... ....
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 34445678999999999987642 22233 334444433 389999999999998753221 1122
Q ss_pred HHHhcCC-eeEEEEcCCccchHHHhhc
Q 016339 131 RLHTWGY-EPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 131 ~~~~~g~-~~v~~s~~~~~~L~~ls~~ 156 (391)
....+++ ..+.+|..++.+++.+-..
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~~l~~~ 193 (201)
T 2gco_A 167 MANRISAFGYLECSAKTKEGVREVFEM 193 (201)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHhCCCcEEEEeeCCCCCCHHHHHHH
Confidence 3345666 6677788777777766433
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0008 Score=59.26 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0013 Score=55.47 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=56.8
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHH--hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~--~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
+.+....++|.+++|+++..+. +...+..++.... ..++|+++|+||+|+.++.+ .+........+++..+.+|.
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRE-SFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSV 148 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEec
Confidence 3445677999999999987642 2223333333322 25899999999999975321 12223344567888899998
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++.+-..
T Consensus 149 ~~~~~i~~l~~~ 160 (168)
T 1z2a_A 149 KEDLNVSEVFKY 160 (168)
T ss_dssp TTTBSSHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888887776543
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00077 Score=57.16 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+-.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00078 Score=56.82 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00085 Score=57.39 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999999754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00077 Score=58.90 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0059 Score=60.67 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=52.9
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCHHHHHHHHHHHHh----c---CCeeEEEEc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLNTWKSRLHT----W---GYEPLFCSV 144 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~-~~~lvlnK~Dl~~~~~~~~~~~~~~~----~---g~~~v~~s~ 144 (391)
.++++|.+++|+++..+...+ +...++..+...+. ++++|+||+|+++.++...+...+.+ . ++..+.+|.
T Consensus 95 ~~~~~D~~ilVvda~~~~~~~-qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA 173 (403)
T 3sjy_A 95 GAALMDGAILVVAANEPFPQP-QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 173 (403)
T ss_dssp HHTTCSEEEEEEETTSCSSCH-HHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred HHhhCCEEEEEEECCCCCCcH-HHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEEC
Confidence 467999999999998764333 34445555555554 88999999999988755443333322 2 345677777
Q ss_pred CCccchHHHh
Q 016339 145 ESKLGLDSLL 154 (391)
Q Consensus 145 ~~~~~L~~ls 154 (391)
.++.+++.+-
T Consensus 174 ~~g~gi~~L~ 183 (403)
T 3sjy_A 174 LHKINIDSLI 183 (403)
T ss_dssp TTTBSHHHHH
T ss_pred CCCcChHHHH
Confidence 6666655443
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00087 Score=57.80 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhc
Q 016339 160 QTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+++|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0009 Score=59.32 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.001 Score=59.10 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=23.2
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|.|++||||||+.+.|+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998643
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.001 Score=58.06 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..++|+|++||||||+.+.|+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998643
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00091 Score=58.27 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.+..++|+|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999843
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00075 Score=59.66 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=58.4
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~ 141 (391)
.+....+.++|.+++|+++..+ .....+..++..... .++|+++|+||+|+.+... ..........+++..+.
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 165 (201)
T 3oes_A 87 ILPYSFIIGVHGYVLVYSVTSL-HSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFME 165 (201)
T ss_dssp CCCGGGTTTCCEEEEEEETTCH-HHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEE
Confidence 3445567899999999998764 223344444444333 4789999999999975421 11122334467888888
Q ss_pred EEcCCccchHHHhhcc
Q 016339 142 CSVESKLGLDSLLQRL 157 (391)
Q Consensus 142 ~s~~~~~~L~~ls~~i 157 (391)
+|..++.+++.+-..+
T Consensus 166 ~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 166 SSARENQLTQGIFTKV 181 (201)
T ss_dssp CCTTCHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9998888888775554
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0037 Score=55.13 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=57.8
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
.+....+.++|.+++|+++..|. ....+..++..... .++++++|+||+|+.+..+ .+........+++..+.+
T Consensus 72 ~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
T 2bcg_Y 72 TITSSYYRGSHGIIIVYDVTDQE-SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLET 150 (206)
T ss_dssp CCCGGGGTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHhccCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEE
Confidence 34455678999999999987652 33444555544433 4688999999999976421 111222334567888888
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 151 Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 151 SALDSTNVEDAFLTM 165 (206)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 887777777665444
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0012 Score=55.60 Aligned_cols=88 Identities=9% Similarity=0.158 Sum_probs=57.4
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+......++|.+++|+++..|. ....+..++..... .++++++|.||+|+.++.. .+.........++..+.+|
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEE-SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETS 149 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hhHHhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 3445578999999999987652 33445555544433 3678888999999965321 1222233456778888889
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 150 a~~g~gi~~l~~~i 163 (170)
T 1r2q_A 150 AKTSMNVNEIFMAI 163 (170)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88888877765443
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0019 Score=54.55 Aligned_cols=87 Identities=10% Similarity=0.139 Sum_probs=56.2
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEEc
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s~ 144 (391)
.....+.++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+... .+........+|+..+.+|.
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (170)
T 1g16_A 68 ITTAYYRGAMGIILVYDITDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSA 146 (170)
T ss_dssp CCHHHHTTEEEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBT
T ss_pred hHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEEC
Confidence 3445578999999999987642 23334455443333 4789999999999953211 11222334456788888898
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++.+-..
T Consensus 147 ~~~~gv~~l~~~ 158 (170)
T 1g16_A 147 KNDDNVNEIFFT 158 (170)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888877776543
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00088 Score=57.40 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998765
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0018 Score=56.54 Aligned_cols=88 Identities=15% Similarity=0.134 Sum_probs=57.6
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+..+ .+........+++..+.+|
T Consensus 86 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 164 (191)
T 2a5j_A 86 ITRSYYRGAAGALLVYDITRRE-TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETS 164 (191)
T ss_dssp CCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred hHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEe
Confidence 3445678999999999987642 33344455544443 4788999999999965321 1122233445688888899
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 165 a~~~~gi~~l~~~l 178 (191)
T 2a5j_A 165 AKTACNVEEAFINT 178 (191)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88888877765443
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00087 Score=59.18 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|++|||||||+|.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00083 Score=59.48 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999998754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0025 Score=53.66 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=54.8
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeeE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEPL 140 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g~~~v 140 (391)
.+..+.++|.+++|+++..| -+...+..++..... .++|+++|+||+|+.+......+...+. ..++..+
T Consensus 61 ~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (164)
T 1r8s_A 61 WRHYFQNTQGLIFVVDSNDR-ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQ 139 (164)
T ss_dssp HHHHTTTCSEEEEEEETTCG-GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEE
T ss_pred HHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEE
Confidence 34457899999999998765 233444455544333 4789999999999976532222222221 1344567
Q ss_pred EEEcCCccchHHHhhcc
Q 016339 141 FCSVESKLGLDSLLQRL 157 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i 157 (391)
.+|..++.+++++-..+
T Consensus 140 ~~Sa~~~~gi~~l~~~l 156 (164)
T 1r8s_A 140 ATCATSGDGLYEGLDWL 156 (164)
T ss_dssp ECBTTTTBTHHHHHHHH
T ss_pred EcccCCCcCHHHHHHHH
Confidence 77887777777664433
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0039 Score=53.52 Aligned_cols=87 Identities=10% Similarity=-0.013 Sum_probs=55.6
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCee
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEP 139 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g~~~ 139 (391)
+....+.++|.+++|+++..+ .....+..++.... ..++|+++|+||+|+.+......+...+. ..++..
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 78 YWRCYYADTAAVIFVVDSTDK-DRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp TGGGTTTTEEEEEEEEETTCT-TTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 344557799999999998765 34445555554433 36789999999999976422222222221 223456
Q ss_pred EEEEcCCccchHHHhhc
Q 016339 140 LFCSVESKLGLDSLLQR 156 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~ 156 (391)
+.+|..++.+++++-..
T Consensus 157 ~~~Sa~~~~gi~~l~~~ 173 (183)
T 1moz_A 157 VASSAIKGEGITEGLDW 173 (183)
T ss_dssp EEEBGGGTBTHHHHHHH
T ss_pred EEccCCCCcCHHHHHHH
Confidence 78888877777766443
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=58.02 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++|+|++||||||+.+.|+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999998543
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.001 Score=57.88 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00035 Score=71.92 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=0.0
Q ss_pred EEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHh
Q 016339 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
.+...+...++++++.+...+++|+|+|||||||||.+|.
T Consensus 42 ~L~i~nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 42 RLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp EEEEESBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHH
T ss_pred eeecccccceeeEEEecCCCeEEEEcCCCCCHHHHHHHHH
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0025 Score=53.20 Aligned_cols=87 Identities=15% Similarity=0.254 Sum_probs=55.5
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s~ 144 (391)
....+.++|.+++|+++..+ .....+..++..... .++|+++|+||+|+.+... .+........+++..+.+|.
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNT-KSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSA 146 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECT
T ss_pred HHHhhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecC
Confidence 34456789999999998654 222233334333322 3799999999999976321 11222333456788899998
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 147 ~~~~gi~~l~~~l 159 (166)
T 2ce2_X 147 KTRQGVEDAFYTL 159 (166)
T ss_dssp TTCTTHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8888887765443
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00096 Score=56.92 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0032 Score=54.15 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=55.7
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHH----HHhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVE----AESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~----a~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
+.+..+.++|.+++|+++..+. +...+..++.. ....++|+++|+||+|+.+... .+........+++..+.+
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (183)
T 3kkq_A 82 MREQYMRTGDGFLIVYSVTDKA-SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIET 160 (183)
T ss_dssp SHHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEe
Confidence 3445577999999999987652 22223333322 2346789999999999965321 111223344567888899
Q ss_pred EcC-CccchHHHhhc
Q 016339 143 SVE-SKLGLDSLLQR 156 (391)
Q Consensus 143 s~~-~~~~L~~ls~~ 156 (391)
|.. ++.+++.+-..
T Consensus 161 Sa~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 161 SAKDPPLNVDKTFHD 175 (183)
T ss_dssp BCSSSCBSHHHHHHH
T ss_pred ccCCCCCCHHHHHHH
Confidence 988 78787776443
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00023 Score=72.96 Aligned_cols=58 Identities=38% Similarity=0.464 Sum_probs=0.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc-
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY- 236 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~- 236 (391)
+|-.++|+|++|||||||+|.|.+.. ...++..++ +|++........++.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~-------------------------~a~vs~~~g----TT~d~~~~~i~~~g~~ 292 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNED-------------------------RAIVTDIPG----TTRDVISEEIVIRGIL 292 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHT-------------------------BCCCCCSSC----CSSCSCCEEEEETTEE
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCC-------------------------CCccCCCCC----eeeeeEEEEEecCCeE
Q ss_pred --ccCCcccc
Q 016339 237 --LADTPGFN 244 (391)
Q Consensus 237 --l~Dtpg~~ 244 (391)
+.||||+.
T Consensus 293 ~~l~DTaG~~ 302 (482)
T 1xzp_A 293 FRIVDTAGVR 302 (482)
T ss_dssp EEEEESSCCC
T ss_pred EEEEECCCcc
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00097 Score=57.99 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999754
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0042 Score=53.85 Aligned_cols=87 Identities=13% Similarity=0.023 Sum_probs=54.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCee
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEP 139 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~-----~~~g~~~ 139 (391)
+.+..+.++|.+++|+++..|. +...+..++..... .++|+++|+||+|+.+......+...+ ...++..
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRD-RMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTI 160 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCT-THHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEE
Confidence 3445577999999999998763 34444444433322 478999999999998653222222222 2234456
Q ss_pred EEEEcCCccchHHHhhc
Q 016339 140 LFCSVESKLGLDSLLQR 156 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~ 156 (391)
+.+|..++.+++.+-..
T Consensus 161 ~~~Sa~~~~gi~~l~~~ 177 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDW 177 (189)
T ss_dssp EECCTTTCTTHHHHHHH
T ss_pred EEccCCCccCHHHHHHH
Confidence 77777777777765443
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.001 Score=57.42 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=58.70 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999854
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.001 Score=63.21 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=22.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|+|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 479999999999999999999975
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=96.57 E-value=0.002 Score=56.46 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=49.3
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh------CCCCEEEEEeCCCCCC-HHH--HHHHHHHHHhcCCeeE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVD-EEV--LNTWKSRLHTWGYEPL 140 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~------~~~~~~lvlnK~Dl~~-~~~--~~~~~~~~~~~g~~~v 140 (391)
....+.++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+ ... .+........+++..+
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSME-SFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHH-HHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhCcEEEEEEECCCHH-HHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEE
Confidence 344567999999999987653 33445555554443 5789999999999987 221 1223344556788888
Q ss_pred EEEcCC-ccchHHHhhc
Q 016339 141 FCSVES-KLGLDSLLQR 156 (391)
Q Consensus 141 ~~s~~~-~~~L~~ls~~ 156 (391)
.+|..+ +.+++.+-..
T Consensus 169 ~~Sa~~~~~gi~~l~~~ 185 (208)
T 2yc2_C 169 DVSANPPGKDADAPFLS 185 (208)
T ss_dssp ECCC-------CHHHHH
T ss_pred EeccCCCCcCHHHHHHH
Confidence 888887 7777665433
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0016 Score=67.73 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|.+|||||||||.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999975
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=56.60 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=57.0
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHH--HHHHHHHHHHhcCCeeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~--~~~~~~~~~~~~g~~~v~~s 143 (391)
.+....++|.+++|+++..+. ....+..++... ...++|+++|+||+|+.+.. ..+........+++..+.+|
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (187)
T 2a9k_A 83 RDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 161 (187)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeC
Confidence 344577999999999987652 222333332222 22478999999999996532 12233345567888888899
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 162 a~~~~gi~~l~~~l 175 (187)
T 2a9k_A 162 AKTRANVDKVFFDL 175 (187)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88888877765443
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00099 Score=57.14 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999765
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.001 Score=57.21 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 368999999999999999999754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0016 Score=55.88 Aligned_cols=90 Identities=17% Similarity=0.262 Sum_probs=57.0
Q ss_pred ccccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHHh--CCCCEEEEEeCCCCCCHHHH------------HHHHH
Q 016339 66 STEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL------------NTWKS 130 (391)
Q Consensus 66 ~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~------------~~~~~ 130 (391)
...+....+.++|.+++|+++..|. ....+. .++..... .++|+++|+||+|+.+.... +....
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~ 147 (182)
T 3bwd_D 69 YNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE 147 (182)
T ss_dssp TTTTGGGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH
T ss_pred hhhhHHhhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH
Confidence 3344555678999999999987642 222332 34433333 37899999999999654322 11222
Q ss_pred HHHhcCC-eeEEEEcCCccchHHHhhc
Q 016339 131 RLHTWGY-EPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 131 ~~~~~g~-~~v~~s~~~~~~L~~ls~~ 156 (391)
....+++ ..+.+|..++.+++.+-..
T Consensus 148 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (182)
T 3bwd_D 148 LKKLIGAPAYIECSSKSQENVKGVFDA 174 (182)
T ss_dssp HHHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHcCCCEEEEEECCCCCCHHHHHHH
Confidence 3345676 7788888888887776543
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=57.36 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=21.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=57.99 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 68999999999999999999754
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=60.71 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|.+++|+|++||||||+.+.|++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999863
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.003 Score=53.27 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=57.8
Q ss_pred cccccccccccceeEEEEEecCCCCCHHHHHHHHHHHH---hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEE
Q 016339 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (391)
Q Consensus 67 ~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~---~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~ 141 (391)
..+....+.++|.+++|+++..|. ....+..++.... ..+.++++|.||+|+.++.+ .+........+++..+.
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1z0j_A 69 RALAPMYYRGSAAAIIVYDITKEE-TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVE 147 (170)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred hcccHhhCcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEE
Confidence 344455678999999999987652 2334444444433 34567889999999975421 11122333467888888
Q ss_pred EEcCCccchHHHhhcc
Q 016339 142 CSVESKLGLDSLLQRL 157 (391)
Q Consensus 142 ~s~~~~~~L~~ls~~i 157 (391)
+|..++.+++.+-..+
T Consensus 148 ~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 148 TSAKNAININELFIEI 163 (170)
T ss_dssp CBTTTTBSHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHH
Confidence 9988888887765443
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0037 Score=54.19 Aligned_cols=87 Identities=15% Similarity=0.242 Sum_probs=54.3
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHH-HHHHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~-~~~~~~~~~~~~g~~~v~~s~ 144 (391)
....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+.. ..+........+++..+.+|.
T Consensus 86 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 164 (190)
T 3con_A 86 RDQYMRTGEGFLCVFAINNSK-SFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSA 164 (190)
T ss_dssp ----CTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHhhCcCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeC
Confidence 344567999999999987652 33344444433332 478999999999997521 111222334456788888888
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 165 ~~~~gi~~l~~~l 177 (190)
T 3con_A 165 KTRQGVEDAFYTL 177 (190)
T ss_dssp TTCTTHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8887777665443
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0024 Score=53.73 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=54.5
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHH----HHhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhc-CCeeEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVE----AESTGIPLTLALNKVELVDEEV--LNTWKSRLHTW-GYEPLFC 142 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~----a~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~-g~~~v~~ 142 (391)
......++|.+++|+++..|. ....+..++.. ....++|+++|+||+|+.++.. .+........+ ++..+.+
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQS-TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLES 146 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEEC
T ss_pred HHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEe
Confidence 344567899999999987652 12222222222 2235899999999999965421 11222233445 6788888
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 147 Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 147 SAKSKINVNEIFYDL 161 (167)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred cCCCCCCHHHHHHHH
Confidence 988888888765443
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=59.47 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHhc
Q 016339 159 DQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
+.+++|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=57.45 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999764
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0011 Score=57.76 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0011 Score=58.23 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0011 Score=57.80 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=62.10 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|.+|||||||+|.|.|..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999875
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0022 Score=55.87 Aligned_cols=88 Identities=17% Similarity=0.104 Sum_probs=58.0
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
.+....+.++|.+++|+++..+ .....+..++..... .++++++|+||+|+.+..+ ...........++..+.+
T Consensus 89 ~~~~~~~~~~d~vi~v~D~~~~-~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
T 2oil_A 89 AITSAYYRGAVGALLVFDLTKH-QTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLET 167 (193)
T ss_dssp TTHHHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred hhhHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 3444567899999999998764 223334455544443 3788999999999975321 122223345678888899
Q ss_pred EcCCccchHHHhhc
Q 016339 143 SVESKLGLDSLLQR 156 (391)
Q Consensus 143 s~~~~~~L~~ls~~ 156 (391)
|..++.+++.+-..
T Consensus 168 Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 168 SALDSTNVELAFET 181 (193)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred eCCCCCCHHHHHHH
Confidence 98888887776443
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=57.94 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0036 Score=54.51 Aligned_cols=86 Identities=16% Similarity=0.070 Sum_probs=52.6
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeeE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEPL 140 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g~~~v 140 (391)
....+.++|.+++|+++..+ -....+..++..... .++++++|+||+|+.+......+...+. ..++..+
T Consensus 84 ~~~~~~~~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (188)
T 1zd9_A 84 WERYCRGVSAIVYMVDAADQ-EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCY 162 (188)
T ss_dssp HHHHHTTCSEEEEEEETTCG-GGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHHccCCEEEEEEECCCH-HHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEE
Confidence 34456899999999998765 233444444443332 6889999999999976422222222221 1234556
Q ss_pred EEEcCCccchHHHhhc
Q 016339 141 FCSVESKLGLDSLLQR 156 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~ 156 (391)
.+|..++.+++++-..
T Consensus 163 ~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 163 SISCKEKDNIDITLQW 178 (188)
T ss_dssp ECCTTTCTTHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 6777777666665443
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=56.82 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|++|||||||+|.|.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=58.29 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 368999999999999999999865
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0011 Score=58.25 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998865
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=57.58 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999864
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0032 Score=55.16 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=56.6
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
......++|.+++|+++..+. ....+..++.... ..++|+++|+||+|+.+..+ .+........+++..+.+|
T Consensus 79 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (206)
T 2bov_A 79 RDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 157 (206)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEe
Confidence 344567999999999987652 2233333333322 23789999999999975421 2223334456788888889
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 158 a~~g~gi~~l~~~l 171 (206)
T 2bov_A 158 AKTRANVDKVFFDL 171 (206)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88887777765443
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0012 Score=56.97 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0019 Score=54.12 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=56.0
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
.+....++|.+++|+++..|. ....+..++.... ..++|+++|+||+|+.+..+ .+........+++..+.+|
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T 1u8z_A 69 RDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETS 147 (168)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeC
Confidence 344567999999999987652 2223333332222 24789999999999965321 2223344456788888889
Q ss_pred cCCccchHHHhhc
Q 016339 144 VESKLGLDSLLQR 156 (391)
Q Consensus 144 ~~~~~~L~~ls~~ 156 (391)
..++.+++.+-..
T Consensus 148 a~~~~gi~~l~~~ 160 (168)
T 1u8z_A 148 AKTRANVDKVFFD 160 (168)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8888888776543
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0013 Score=56.99 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=63.06 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+..+.|+|||||||||+.+.|+...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997643
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=57.59 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999999754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0047 Score=53.44 Aligned_cols=87 Identities=8% Similarity=0.064 Sum_probs=56.9
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHH-hCCCCEEEEEeCCCCCCHH-HHHHHHHHHHhcCCeeEEEEcCCc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE-STGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESK 147 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~-~~~~~~~lvlnK~Dl~~~~-~~~~~~~~~~~~g~~~v~~s~~~~ 147 (391)
....+.++|.+++|+.+..|. ....+..++.... ..++++++|+||+|+.+.. ..+.....+..+++..+.+|..++
T Consensus 110 ~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 188 (208)
T 3clv_A 110 VPLYYRGATCAIVVFDISNSN-TLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTG 188 (208)
T ss_dssp HHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTC
T ss_pred HHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCC
Confidence 344567999999999987652 2233444544433 3679999999999942211 123333455667888899999888
Q ss_pred cchHHHhhcc
Q 016339 148 LGLDSLLQRL 157 (391)
Q Consensus 148 ~~L~~ls~~i 157 (391)
.+++.+-..+
T Consensus 189 ~~i~~l~~~l 198 (208)
T 3clv_A 189 TNIKNIFYML 198 (208)
T ss_dssp TTHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8877765443
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0042 Score=55.28 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=55.1
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHH---hCCCCEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeeEEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~---~~~~~~~lvlnK~Dl~~~~~~--~~~~~~~~~~g~~~v~~ 142 (391)
.+......++|.+++|+++..+. ....+.+++.... ..++++++|+||+|+.+..+. +.........++..+.+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRI-TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEI 154 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEE
T ss_pred hHHHHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEE
Confidence 33444577899999999987642 2233334433333 347899999999999865322 11223345577888888
Q ss_pred EcCCccchHHHhhc
Q 016339 143 SVESKLGLDSLLQR 156 (391)
Q Consensus 143 s~~~~~~L~~ls~~ 156 (391)
|..++.+++.+-..
T Consensus 155 Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 155 SAKTAHNFGLPFLH 168 (218)
T ss_dssp BTTTTBTTTHHHHH
T ss_pred ecCCCCCHHHHHHH
Confidence 98888777776443
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=57.78 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0012 Score=57.21 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999875
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=56.90 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|++|||||||+|.|.+-.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999654
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0013 Score=57.37 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.8
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999865
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0068 Score=53.07 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=55.3
Q ss_pred cccccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHH--hCCCCEEEEEeCCCCCCHHH--------------HHH
Q 016339 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAE--STGIPLTLALNKVELVDEEV--------------LNT 127 (391)
Q Consensus 65 R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~--~~~~~~~lvlnK~Dl~~~~~--------------~~~ 127 (391)
+...+.+..+.++|.+++|+++..+. ....+. .++.... ..++|+++|+||+|+.+... .+.
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPS-SFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 33344555678999999999987652 222232 3433332 24889999999999975321 111
Q ss_pred HHHHHHhcCC-eeEEEEcCCccchHHHhhc
Q 016339 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 128 ~~~~~~~~g~-~~v~~s~~~~~~L~~ls~~ 156 (391)
.......+++ ..+.+|..++.+++.+-..
T Consensus 159 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 188 (201)
T 2q3h_A 159 AKLLAEEIKAASYIECSALTQKNLKEVFDA 188 (201)
T ss_dssp HHHHHHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHhcCCcEEEEEecCCCCCHHHHHHH
Confidence 1122334566 6777888777777765443
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0012 Score=57.40 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|++|||||||+|.|.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0013 Score=57.66 Aligned_cols=23 Identities=35% Similarity=0.728 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0012 Score=58.83 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999865
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0022 Score=61.43 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..++|+|++|||||||+|.+.+..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999988764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.003 Score=55.44 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=54.4
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeeE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEPL 140 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g~~~v 140 (391)
.+..+.++|.+++|+++..|. ....+..++..... .++|+++|+||+|+.+......+...+. ..++..+
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~-s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 168 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRE-RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQ 168 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEE
T ss_pred HHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEE
Confidence 344568999999999987652 34445555544333 4789999999999976532233322221 2234567
Q ss_pred EEEcCCccchHHHhhc
Q 016339 141 FCSVESKLGLDSLLQR 156 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~ 156 (391)
.+|..++.+++++-..
T Consensus 169 ~~SA~~g~gi~~l~~~ 184 (192)
T 2b6h_A 169 ATCATQGTGLYDGLDW 184 (192)
T ss_dssp ECBTTTTBTHHHHHHH
T ss_pred ECcCCCcCCHHHHHHH
Confidence 7787777777766443
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0013 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||++.+.+-.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0013 Score=57.14 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=57.73 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0032 Score=53.27 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=55.3
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcC
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~ 145 (391)
....++|.+++|+++..| -....+..++..... .++|+++|.||+|+.+..+ .+........+++..+.+|..
T Consensus 71 ~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T 3q85_A 71 HCLQTGDAFLIVFSVTDR-RSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 149 (169)
T ss_dssp HHHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred hhhccCCEEEEEEECCCh-HHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCc
Confidence 346789999999998764 223334444443333 3789999999999964321 122223445678888999998
Q ss_pred CccchHHHhhc
Q 016339 146 SKLGLDSLLQR 156 (391)
Q Consensus 146 ~~~~L~~ls~~ 156 (391)
++.+++++-..
T Consensus 150 ~~~~v~~l~~~ 160 (169)
T 3q85_A 150 LHHNTRELFEG 160 (169)
T ss_dssp TTBSHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 88888776443
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.012 Score=52.45 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=52.4
Q ss_pred ccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHH----HHHHHh-------cCCeeEEE
Q 016339 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW----KSRLHT-------WGYEPLFC 142 (391)
Q Consensus 74 ~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~----~~~~~~-------~g~~~v~~ 142 (391)
+..+|.+++|+.+..+ +... -..++......++++++|+||+|+.+..+.... ...+.. .+...+.+
T Consensus 113 ~~~~d~vi~v~d~~~~-~~~~-~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (223)
T 4dhe_A 113 RPQLCGMILMMDARRP-LTEL-DRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLF 190 (223)
T ss_dssp CTTEEEEEEEEETTSC-CCHH-HHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEE
T ss_pred CcCcCEEEEEEeCCCC-CCHH-HHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEe
Confidence 3458888888888764 3322 122334445678999999999999987654322 223333 34567788
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 191 SA~~g~gv~~l~~~l 205 (223)
T 4dhe_A 191 SALKRTGLDDAHALI 205 (223)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred ecCCCcCHHHHHHHH
Confidence 887777777654433
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=57.93 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=57.06 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0032 Score=54.01 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=54.0
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHHh--CCCCEEEEEeCCCCCCHHHHH--------------HHHH
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVLN--------------TWKS 130 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~~--------------~~~~ 130 (391)
.+....+.++|.+++|+++..+. +...+. .++..... .++|+++|+||+|+.+..... ....
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChh-hHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 34445678999999999987642 222332 33333333 388999999999997643211 1122
Q ss_pred HHHhcCC-eeEEEEcCCccchHHHhhc
Q 016339 131 RLHTWGY-EPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 131 ~~~~~g~-~~v~~s~~~~~~L~~ls~~ 156 (391)
....+++ ..+.+|..++.+++.+-..
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 173 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALTQRGLKTVFDE 173 (186)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHhcCCcEEEEecCCCccCHHHHHHH
Confidence 3344565 6777787777777665433
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0013 Score=61.35 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+||||||||||.+.|+...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0069 Score=51.56 Aligned_cols=84 Identities=10% Similarity=0.110 Sum_probs=52.2
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh-------CCCCEEEEEeCCCCCCHH------HHHHHHHHHHhcC
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-------TGIPLTLALNKVELVDEE------VLNTWKSRLHTWG 136 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~-------~~~~~~lvlnK~Dl~~~~------~~~~~~~~~~~~g 136 (391)
......++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+.. +...+... ..+
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~--~~~ 151 (182)
T 1ky3_A 75 GVAFYRGADCCVLVYDVTNAS-SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS--LGD 151 (182)
T ss_dssp --CCSTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH--TTS
T ss_pred hHHHhhcCCEEEEEEECCChH-HHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh--cCC
Confidence 344567999999999987652 22333333332222 678999999999996432 22222211 245
Q ss_pred CeeEEEEcCCccchHHHhhc
Q 016339 137 YEPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~ 156 (391)
...+.+|..++.+++.+-..
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~ 171 (182)
T 1ky3_A 152 IPLFLTSAKNAINVDTAFEE 171 (182)
T ss_dssp CCEEEEBTTTTBSHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHH
Confidence 67888898888887776443
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0015 Score=56.79 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0012 Score=64.93 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=24.5
Q ss_pred HHHhhcccCCEEEEEecCCCcHHHHHHHHh
Q 016339 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 151 ~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
+++.+.+...+++|+|||||||||+|-+|.
T Consensus 17 ~~~~i~f~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCSEEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCCCeEEEECCCCCCHHHHHHHHH
Confidence 444455556799999999999999999976
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0012 Score=58.31 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=38.1
Q ss_pred hcCccccccccccccccc----CCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHL----GEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~----~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+++ + ..|+++|+| |+.....+.+++.++...
T Consensus 64 ~LSgGekqr~ala~~l-a~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~ 117 (173)
T 3kta_B 64 AMSGGEKALTALAFVF-AIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE 117 (173)
T ss_dssp GCCHHHHHHHHHHHHH-HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHH-HhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC
Confidence 8999999999999999 5 346899999 888999999999887543
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0014 Score=57.85 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999999754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0014 Score=57.19 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999764
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0025 Score=55.69 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=57.2
Q ss_pred cccccccccccceeEEEEEecCCCCCHHHH-HHHHHHHH--hCCCCEEEEEeCCCCCCHH----HHHHHHHHHHhcCCe-
Q 016339 67 TEILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAE--STGIPLTLALNKVELVDEE----VLNTWKSRLHTWGYE- 138 (391)
Q Consensus 67 ~~~~~~~~anvD~~liv~s~~~p~~~~~~l-~r~L~~a~--~~~~~~~lvlnK~Dl~~~~----~~~~~~~~~~~~g~~- 138 (391)
..+......++|.+++|+++..+. ....+ ..++.... ..++|+++|.||+|+.++. ..+........+|+.
T Consensus 85 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (194)
T 3reg_A 85 DRLRPLSYADSDVVLLCFAVNNRT-SFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA 163 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred HHHhHhhccCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence 344455678999999999987652 22222 33333333 2468999999999997531 112222344556776
Q ss_pred eEEEEcCCccchHHHhhcc
Q 016339 139 PLFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i 157 (391)
.+.+|..++.+++.+-..+
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l 182 (194)
T 3reg_A 164 YIEASSVAKIGLNEVFEKS 182 (194)
T ss_dssp EEECBTTTTBSHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHHH
Confidence 7888988888888765443
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0015 Score=57.06 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999999754
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=57.19 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999875
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0015 Score=60.46 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
..+++|.|||||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999843
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0015 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.+.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=56.81 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.+++|.|++||||||+.+.|+..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0029 Score=53.95 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=55.2
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh-----CCCC-EEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-----TGIP-LTLALNKVELVDEEV--LNTWKSRLHTWGYEPL 140 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~-----~~~~-~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v 140 (391)
+.+..+.++|.+++|+++..|. ....+..++..... .+.+ +++|.||+|+.+... .+........+++..+
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2hxs_A 72 MLDKYIYGAQGVLLVYDITNYQ-SFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSH 150 (178)
T ss_dssp THHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred hhhHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEE
Confidence 3344578999999999987652 22233344433333 3667 688999999965311 1122233345678888
Q ss_pred EEEcCCccchHHHhhcc
Q 016339 141 FCSVESKLGLDSLLQRL 157 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i 157 (391)
.+|..++.+++.+-..+
T Consensus 151 ~~Sa~~~~gi~~l~~~l 167 (178)
T 2hxs_A 151 FVSAKTGDSVFLCFQKV 167 (178)
T ss_dssp EECTTTCTTHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHH
Confidence 99988888777765443
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0021 Score=57.83 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=54.9
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
.+....+.++|.+++|+++..+ .....+..++..... .++++++|+||+|+.+..+ .+........+++..+.+
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~-~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 155 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKS-SSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTET 155 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCH-HHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhHHHHhccCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 3445567899999999998765 233445555544443 3788999999999965321 112223344567788888
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 156 Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 156 SALNSENVDKAFEEL 170 (223)
T ss_dssp CCC-CCCHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 888777777664443
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0016 Score=58.12 Aligned_cols=21 Identities=33% Similarity=0.727 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|++|||||||+|.|.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0015 Score=57.07 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0013 Score=65.06 Aligned_cols=23 Identities=48% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+||||||||+|+|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999863
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0016 Score=57.33 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+|+||||||||++.|++.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 478999999999999999998764
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0016 Score=58.21 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=21.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl 182 (391)
..++|+|++|||||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0016 Score=57.42 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0017 Score=57.70 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0016 Score=57.10 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999999764
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.001 Score=61.71 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+..+.|+|+|||||||+.+.|+...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998865
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0011 Score=59.07 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0027 Score=56.49 Aligned_cols=86 Identities=13% Similarity=0.195 Sum_probs=55.7
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
...+.++|.+++|+++..+ .....+..++..... .++++++|+||+|+.+..+ ..........+++..+.+|.
T Consensus 102 ~~~~~~~d~iilV~D~~~~-~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHTTCCEEEEEEETTCH-HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 3456799999999998754 223334445433322 5788999999999975321 12222334557888889998
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 181 ~~g~gi~~l~~~l 193 (217)
T 2f7s_A 181 ATGQNVEKAVETL 193 (217)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8887777664433
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.002 Score=58.40 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.2
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998544
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=57.75 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|++|||||||+|.|.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0019 Score=56.78 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=22.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.-.++|+|++|||||||+|.+.+-.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCC
Confidence 44579999999999999999997643
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0026 Score=53.56 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=56.2
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCH---HH--HHHHHHHHHhcCCeeE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDE---EV--LNTWKSRLHTWGYEPL 140 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~---~~--~~~~~~~~~~~g~~~v 140 (391)
+....+.++|.+++|+++..| .....+..++..... .++++++|+||+|+.+. .+ .+........+++..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKP-QSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFF 146 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEE
T ss_pred hhhhhhccCcEEEEEEecCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEE
Confidence 344557899999999998765 223344444433332 47889999999999754 11 1111223345678888
Q ss_pred EEEcCCccchHHHhhcc
Q 016339 141 FCSVESKLGLDSLLQRL 157 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i 157 (391)
.+|..++.+++.+-..+
T Consensus 147 ~~Sa~~~~gi~~l~~~l 163 (170)
T 1ek0_A 147 ETSAKTGENVNDVFLGI 163 (170)
T ss_dssp ECCTTTCTTHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHH
Confidence 88888888877765444
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0019 Score=57.56 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0017 Score=56.70 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 68999999999999999998754
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0041 Score=54.20 Aligned_cols=86 Identities=13% Similarity=0.211 Sum_probs=56.3
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcC
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~ 145 (391)
.....++|.+++|+++..+ .....+..++..... .++++++|+||+|+.+... .+........+|+..+.+|..
T Consensus 90 ~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNE-ESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAK 168 (191)
T ss_dssp HHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HHHHccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECC
Confidence 3456799999999998754 222334445444444 5789999999999964321 111122334568888889998
Q ss_pred CccchHHHhhcc
Q 016339 146 SKLGLDSLLQRL 157 (391)
Q Consensus 146 ~~~~L~~ls~~i 157 (391)
++.+++++-..+
T Consensus 169 ~~~gi~~l~~~l 180 (191)
T 3dz8_A 169 ENISVRQAFERL 180 (191)
T ss_dssp TTBSHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 888887765443
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0019 Score=58.45 Aligned_cols=21 Identities=43% Similarity=0.744 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|++|||||||+|.+.+
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0012 Score=56.85 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=9.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0012 Score=65.03 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=24.2
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+++.|.||||||||||+..++...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999875
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0079 Score=51.38 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=52.5
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHH---HHHHHh---CCCCEEEEEeCCCCC-------CHHHHHHHHHHHHhc-CCe
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRF---LVEAES---TGIPLTLALNKVELV-------DEEVLNTWKSRLHTW-GYE 138 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~---L~~a~~---~~~~~~lvlnK~Dl~-------~~~~~~~~~~~~~~~-g~~ 138 (391)
...++|.+++|+++..|. +...+..+ +..... .++|+++|.||+|+. ..++...+. ..+ ++.
T Consensus 69 ~~~~~d~~ilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~---~~~~~~~ 144 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDEN-SFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX---ADMKRCS 144 (178)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH---HHHSSEE
T ss_pred HHHhCCEEEEEEECcCHH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH---HhhcCCe
Confidence 356899999999987653 34445553 322222 478999999999993 233333332 333 567
Q ss_pred eEEEEcCCccchHHHhhc
Q 016339 139 PLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~ 156 (391)
.+.+|..++.+++.+-..
T Consensus 145 ~~~~Sa~~~~~i~~lf~~ 162 (178)
T 2iwr_A 145 YYETXATYGLNVDRVFQE 162 (178)
T ss_dssp EEEEBTTTTBTHHHHHHH
T ss_pred EEEEeccccCCHHHHHHH
Confidence 888998888888776443
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0019 Score=57.74 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.011 Score=50.20 Aligned_cols=84 Identities=21% Similarity=0.334 Sum_probs=51.1
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCH--HHHHHHHHHHH----hcC--CeeEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--EVLNTWKSRLH----TWG--YEPLF 141 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~--~~~~~~~~~~~----~~g--~~~v~ 141 (391)
....+.++|.+++|+++..+.. ...+ ..+......++|+++|+||+|+.+. ++...+...+. .++ +..+.
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~-~~~~-~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVM-PQTV-EAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCC-HHHH-HHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred HHHHHhhCCEEEEEEECCCCCc-HHHH-HHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEE
Confidence 3445678999999999876532 2222 3344445678999999999999864 22222211111 122 35667
Q ss_pred EEcCCccchHHHhh
Q 016339 142 CSVESKLGLDSLLQ 155 (391)
Q Consensus 142 ~s~~~~~~L~~ls~ 155 (391)
+|..++.+++.+-.
T Consensus 150 ~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 150 LSAKTKEGLDHLLE 163 (178)
T ss_dssp CCSSSSHHHHHHHH
T ss_pred EecCCCCCHHHHHH
Confidence 77777776666543
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.002 Score=58.23 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998654
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0016 Score=56.55 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=18.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++|.|++||||||+.+.|+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998654
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0021 Score=56.46 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=20.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.+.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999999754
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0031 Score=55.79 Aligned_cols=87 Identities=11% Similarity=0.165 Sum_probs=56.9
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCC-eeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGY-EPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~-~~v~~s 143 (391)
....+.++|.+++|+++..+. ....+..++..... .++++++|.||+|+.+... .+........+++ ..+.+|
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRS-SFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETS 173 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECB
T ss_pred HHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEe
Confidence 344567999999999987642 23334444444333 5688999999999975311 1222234456788 788889
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 174 A~~g~gi~~l~~~l 187 (201)
T 2hup_A 174 AKDSSNVEEAFLRV 187 (201)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88888887765444
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0026 Score=56.25 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=57.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+... ...........++..+.+|
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 168 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRE-TYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETS 168 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEe
Confidence 3445578999999999987652 23334445443332 4789999999999964321 1222334456788888889
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 169 A~~g~gi~~l~~~l 182 (200)
T 2o52_A 169 ALTGENVEEAFLKC 182 (200)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88887777665443
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0026 Score=54.50 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=28.1
Q ss_pred CCccchHHHhhcc---cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 145 ESKLGLDSLLQRL---RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 145 ~~~~~L~~ls~~i---~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+....++.+.-.+ .+..+.|.||+|+|||||++.++...
T Consensus 26 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 26 GRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3334445444444 34678999999999999999998764
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0018 Score=56.30 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.+.+-.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~ 46 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGD 46 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999997643
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.018 Score=56.07 Aligned_cols=83 Identities=16% Similarity=0.294 Sum_probs=59.3
Q ss_pred cccceeEEEEEecCC-CCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccchH
Q 016339 75 ANVDHLLLLFSMDQP-KLEPFALTRFLVEAES--TGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLD 151 (391)
Q Consensus 75 anvD~~liv~s~~~p-~~~~~~l~r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L~ 151 (391)
.++|.+++|+.+..+ .++.....+++..... .++++++|+||+|+.+..+.......+...+...+.+|..++.+++
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~ 324 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGID 324 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHH
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHH
Confidence 468988888887544 2355555555444333 3899999999999998766555555555678888999988888888
Q ss_pred HHhhcc
Q 016339 152 SLLQRL 157 (391)
Q Consensus 152 ~ls~~i 157 (391)
++-..+
T Consensus 325 ~l~~~i 330 (357)
T 2e87_A 325 LVKEEI 330 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0023 Score=56.28 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|++|||||||+|.+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHh
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0012 Score=59.11 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=53.9
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCC
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES--TGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES 146 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~ 146 (391)
+......++|.+++|+++..+ .....+..++..... .++++++|+||+|+.+.............+++..+.+|..+
T Consensus 80 ~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (221)
T 3gj0_A 80 LRDGYYIQAQCAIIMFDVTSR-VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS 158 (221)
T ss_dssp CCHHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGG
T ss_pred HHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCC
Confidence 344456799999999998764 223333444443333 37899999999999764322222223345577778888777
Q ss_pred ccchHHHh
Q 016339 147 KLGLDSLL 154 (391)
Q Consensus 147 ~~~L~~ls 154 (391)
+.+++.+-
T Consensus 159 ~~gi~~l~ 166 (221)
T 3gj0_A 159 NYNFEKPF 166 (221)
T ss_dssp TBTTTHHH
T ss_pred CCCHHHHH
Confidence 76666553
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0021 Score=57.53 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0032 Score=55.91 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=55.7
Q ss_pred ccccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHHh--CCCCEEEEEeCCCCCCHHHHH--------------HH
Q 016339 66 STEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVLN--------------TW 128 (391)
Q Consensus 66 ~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~~--------------~~ 128 (391)
...+....+.++|.+++|+++..+. ....+. .++..... .++|+++|+||+|+.+..... ..
T Consensus 91 ~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 4gzl_A 91 YDRLRPLSYPQTDVFLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred hHHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHH
Confidence 3344455678999999999987642 222232 34444443 389999999999997654311 11
Q ss_pred HHHHHhcCC-eeEEEEcCCccchHHHhh
Q 016339 129 KSRLHTWGY-EPLFCSVESKLGLDSLLQ 155 (391)
Q Consensus 129 ~~~~~~~g~-~~v~~s~~~~~~L~~ls~ 155 (391)
......+++ ..+.+|..++.+++.+-.
T Consensus 170 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 197 (204)
T 4gzl_A 170 LAMAKEIGAVKYLECSALTQRGLKTVFD 197 (204)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred HHHHHhcCCcEEEEeeCCCCCCHHHHHH
Confidence 223344565 467778877777776643
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=56.75 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=29.3
Q ss_pred CCccchHHHhhcc-cC---CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 145 ESKLGLDSLLQRL-RD---QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~G---e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+....++.+...+ .| ..+.|.||+|+|||||++.++...
T Consensus 27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445566665555 33 378999999999999999998654
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0025 Score=57.48 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998654
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0021 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999999754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0034 Score=52.54 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=54.4
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
...+.++|.+++|+++..+. ....+..++... ...++|+++|+||+|+.++.+ ..........+++..+.+|.
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T 1kao_A 69 DLYIKNGQGFILVYSLVNQQ-SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSA 147 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECT
T ss_pred HHHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecC
Confidence 34567899999999987642 222333333222 235899999999999965421 11222334456888899999
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++.+-..
T Consensus 148 ~~~~gi~~l~~~ 159 (167)
T 1kao_A 148 KSKTMVDELFAE 159 (167)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCCcCHHHHHHH
Confidence 888877776443
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=56.36 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.+++|+|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998643
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0025 Score=54.29 Aligned_cols=88 Identities=14% Similarity=0.222 Sum_probs=56.4
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeeEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~~~--~~~~~~~~~~g~~~v~~ 142 (391)
+......++|.+++|+++..+. ....+..++... ...++++++|+||+|+.+..+. ..........++..+.+
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 151 (181)
T 2fn4_A 73 MREQYMRAGHGFLLVFAINDRQ-SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEA 151 (181)
T ss_dssp CHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhhCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence 3344567999999999987642 222333333222 3458899999999999754211 11222334568888889
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 152 Sa~~~~gv~~l~~~l 166 (181)
T 2fn4_A 152 SAKLRLNVDEAFEQL 166 (181)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred cCCCCCCHHHHHHHH
Confidence 988888887765443
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0023 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0061 Score=52.34 Aligned_cols=87 Identities=17% Similarity=0.283 Sum_probs=54.8
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s 143 (391)
+.+..+.++|.+++|+.+..+. ....+..++.... ..++|+++|+||+|+.+... .+........+++..+.+|
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 146 (189)
T 4dsu_A 68 MRDQYMRTGEGFLCVFAINNTK-SFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETS 146 (189)
T ss_dssp THHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 3445577899999999987642 2233333333322 35789999999999975321 1112223345677888888
Q ss_pred cCCccchHHHhhc
Q 016339 144 VESKLGLDSLLQR 156 (391)
Q Consensus 144 ~~~~~~L~~ls~~ 156 (391)
..++.+++.+-..
T Consensus 147 a~~g~gi~~l~~~ 159 (189)
T 4dsu_A 147 AKTRQGVDDAFYT 159 (189)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8877777765433
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0037 Score=55.43 Aligned_cols=87 Identities=22% Similarity=0.356 Sum_probs=51.3
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHH-HHHHHHHHh--CCCCEEEEEeCCCCCCHHHHHHHH--------------H
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEEVLNTWK--------------S 130 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l-~r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~~~~~--------------~ 130 (391)
.+....+.++|.+++|+++..+. ....+ ..++..... .++|+++|+||+|+.+......+. .
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPD-SLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHhhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHH
Confidence 34455678999999999987642 22233 233333333 389999999999997653322211 1
Q ss_pred HHHhcCC-eeEEEEcCCccchHHHhh
Q 016339 131 RLHTWGY-EPLFCSVESKLGLDSLLQ 155 (391)
Q Consensus 131 ~~~~~g~-~~v~~s~~~~~~L~~ls~ 155 (391)
....+++ ..+.+|..++.+++.+-.
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~el~~ 192 (207)
T 2fv8_A 167 MAVRIQAYDYLECSAKTKEGVREVFE 192 (207)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred HHHhcCCCEEEEeeCCCCCCHHHHHH
Confidence 1223444 555666666666655543
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0063 Score=53.36 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=54.2
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh-------CCCCEEEEEeCCCCCCHHH-HHHHHHHHH-hcCCe
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-------TGIPLTLALNKVELVDEEV-LNTWKSRLH-TWGYE 138 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~-------~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~-~~g~~ 138 (391)
.+....+.++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+... .+....... ..++.
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPN-TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP 150 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC
T ss_pred HhHHHHHhCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce
Confidence 34445678999999999987642 22233333332221 4789999999999974321 111112222 45667
Q ss_pred eEEEEcCCccchHHHhhcc
Q 016339 139 PLFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i 157 (391)
.+.+|..++.+++.+-..+
T Consensus 151 ~~~~Sa~~g~gi~~l~~~l 169 (207)
T 1vg8_A 151 YFETSAKEAINVEQAFQTI 169 (207)
T ss_dssp EEECBTTTTBSHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHH
Confidence 7888887777777665444
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0025 Score=57.15 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|.||+||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0026 Score=55.24 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.+++|.|++||||||+.+.|+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0026 Score=55.45 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0023 Score=54.90 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0021 Score=59.27 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-+.|+||||+|||||+++|++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 48999999999999999999865
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.011 Score=51.60 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=53.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHHHHHHHHHHHh----------
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLHT---------- 134 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~---------- 134 (391)
+.+....++|.+++|+++..+. +...+..++.... ..++|+++|.||+|+.+....+.....+..
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPE-RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIE 161 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CC
T ss_pred HHHHHHhcCCEEEEEEECCChH-HHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcccccccccc
Confidence 3344567999999999987652 3344444444332 367899999999999753212222222221
Q ss_pred --cCCeeEEEEcCCccchHHHhhc
Q 016339 135 --WGYEPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 135 --~g~~~v~~s~~~~~~L~~ls~~ 156 (391)
.+...+.+|..++.+++++-..
T Consensus 162 ~~~~~~~~~~Sa~~g~gi~~l~~~ 185 (190)
T 1m2o_B 162 GQRPVEVFMCSVVMRNGYLEAFQW 185 (190)
T ss_dssp SSCCEEEEECBTTTTBSHHHHHHH
T ss_pred ccceEEEEEeECCcCCCHHHHHHH
Confidence 2335667777777777766433
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.004 Score=54.37 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=54.8
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHHHh------CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~------~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
..+.++|.+++|+++..+. +...+..++..... .++++++|.||+|+.+..+ .+........+++..+.+|
T Consensus 87 ~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 165 (187)
T 3c5c_A 87 RYLNWAHAFLVVYSVDSRQ-SFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVS 165 (187)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEe
Confidence 3567899999999997642 23344444444332 5899999999999964311 1112233455688888888
Q ss_pred c-CCccchHHHhhc
Q 016339 144 V-ESKLGLDSLLQR 156 (391)
Q Consensus 144 ~-~~~~~L~~ls~~ 156 (391)
. .++.+++.+-..
T Consensus 166 a~~~g~gv~~lf~~ 179 (187)
T 3c5c_A 166 ACLDFEHVQHVFHE 179 (187)
T ss_dssp SSSCSHHHHHHHHH
T ss_pred ecCccccHHHHHHH
Confidence 8 777777766443
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.003 Score=54.39 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=56.3
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHH---HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a---~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
....+.++|.+++|+++..+. ....+..++... ...++|+++|+||+|+.+..+ ...........++..+.+|.
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRE-TYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 154 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecC
Confidence 345578999999999987642 233334444322 235789999999999964321 12223344567888888888
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 155 ~~~~gi~~l~~~l 167 (186)
T 2bme_A 155 LTGENVEEAFVQC 167 (186)
T ss_dssp TTCTTHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8887777664433
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0028 Score=53.41 Aligned_cols=88 Identities=16% Similarity=0.221 Sum_probs=54.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh-----CCCCEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeeEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-----TGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLF 141 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~-----~~~~~~lvlnK~Dl~~~~~~--~~~~~~~~~~g~~~v~ 141 (391)
+.+..+.++|.+++|+++..|. ....+..++..... .++|+++|+||+|+.+..+. .........+++..+.
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 145 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSRQ-SLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFME 145 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHhcccCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEE
Confidence 3344567899999999987642 12222233222222 47899999999999654211 1112233456788888
Q ss_pred EEcCCccchHHHhhcc
Q 016339 142 CSVESKLGLDSLLQRL 157 (391)
Q Consensus 142 ~s~~~~~~L~~ls~~i 157 (391)
+|..++.+++.+-..+
T Consensus 146 ~Sa~~~~gi~~l~~~l 161 (172)
T 2erx_A 146 TSAKLNHNVKELFQEL 161 (172)
T ss_dssp CBTTTTBSHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHH
Confidence 8888888877765444
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0012 Score=66.61 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=23.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++++||+||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999876
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0053 Score=53.97 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=53.2
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--------HHHHHHHHHhcCCee
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--------LNTWKSRLHTWGYEP 139 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--------~~~~~~~~~~~g~~~ 139 (391)
...+.++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+... .+........+++..
T Consensus 95 ~~~~~~~d~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 173 (199)
T 2p5s_A 95 KSYFRKADGVLLLYDVTCEK-SFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALF 173 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEE
T ss_pred HHHHhhCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeE
Confidence 34567999999999987542 23334444433332 4789999999999963210 111112334567788
Q ss_pred EEEEcCCccchHHHhhcc
Q 016339 140 LFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i 157 (391)
+.+|..++.+++++-..+
T Consensus 174 ~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 174 CETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHH
Confidence 888888888777765443
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0018 Score=61.18 Aligned_cols=39 Identities=23% Similarity=0.464 Sum_probs=31.7
Q ss_pred CCccchHHHhhcc-c-----------CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 145 ESKLGLDSLLQRL-R-----------DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~-----------Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+...+++.+...+ . ...+.|+||+|+|||||+++|+...
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 5666777777766 1 2579999999999999999999875
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0018 Score=63.98 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=23.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+..++|+||||||||||++.|+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999765
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0079 Score=57.55 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=49.7
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC-CHHHHHHHHHHHH-hcC--CeeEEEEcCCc
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLH-TWG--YEPLFCSVESK 147 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~-~~~~~~~~~~~~~-~~g--~~~v~~s~~~~ 147 (391)
..+.++|.+++|+.+..+ .......-++......++|+++|+||+|+. +......+...+. .++ ...+.+|..++
T Consensus 88 ~~l~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g 166 (308)
T 3iev_A 88 QSLEEADVILFMIDATEG-WRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKG 166 (308)
T ss_dssp HHHHHCSEEEEEEETTTB-SCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTT
T ss_pred HHhhcCCEEEEEEeCCCC-CCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCC
Confidence 456799999999998764 444444433555566789999999999998 5544444433333 233 34555555444
Q ss_pred cchHH
Q 016339 148 LGLDS 152 (391)
Q Consensus 148 ~~L~~ 152 (391)
.+++.
T Consensus 167 ~gv~~ 171 (308)
T 3iev_A 167 ANLDE 171 (308)
T ss_dssp BSHHH
T ss_pred CCHHH
Confidence 44333
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0047 Score=53.73 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=52.5
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHH---HHHH--hCCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFL---VEAE--STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L---~~a~--~~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s 143 (391)
.+..+.++|.+++|+++..|. ....+..++ .... ..++|+++|+||+|+.+... ..........+++..+.+|
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 151 (199)
T 2gf0_A 73 QRLSISKGHAFILVFSVTSKQ-SLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETS 151 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHhhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEe
Confidence 344567999999999987642 122222222 2222 14789999999999975321 1122233445677888888
Q ss_pred cCCccchHHHhhc
Q 016339 144 VESKLGLDSLLQR 156 (391)
Q Consensus 144 ~~~~~~L~~ls~~ 156 (391)
..++.+++.+-..
T Consensus 152 a~~~~gi~~l~~~ 164 (199)
T 2gf0_A 152 AKMNYNVKELFQE 164 (199)
T ss_dssp TTTTBSHHHHHHH
T ss_pred cCCCCCHHHHHHH
Confidence 8777777665433
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0035 Score=56.19 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=56.5
Q ss_pred cccccccccccceeEEEEEecCCCCCHHH-HHHHHHHHHh--CCCCEEEEEeCCCCCCH-----------------HHHH
Q 016339 67 TEILDPPVANVDHLLLLFSMDQPKLEPFA-LTRFLVEAES--TGIPLTLALNKVELVDE-----------------EVLN 126 (391)
Q Consensus 67 ~~~~~~~~anvD~~liv~s~~~p~~~~~~-l~r~L~~a~~--~~~~~~lvlnK~Dl~~~-----------------~~~~ 126 (391)
..+.+....++|.+++|+++..+. +... +..++..... .++|+++|.||+|+.++ ++..
T Consensus 89 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 167 (214)
T 3q3j_B 89 DNVRPLCYSDSDAVLLCFDISRPE-TVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167 (214)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCTH-HHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHHcCCCeEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence 344455678999999999998752 2222 3445444443 37899999999999642 2222
Q ss_pred HHHHHHHhcCC-eeEEEEcCCccc-hHHHhhcc
Q 016339 127 TWKSRLHTWGY-EPLFCSVESKLG-LDSLLQRL 157 (391)
Q Consensus 127 ~~~~~~~~~g~-~~v~~s~~~~~~-L~~ls~~i 157 (391)
.....+++ ..+.+|..++.+ ++.+-..+
T Consensus 168 ---~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 168 ---AIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197 (214)
T ss_dssp ---HHHHHHTCSEEEECCTTTCHHHHHHHHHHH
T ss_pred ---HHHHHcCCCEEEEeccCCCcccHHHHHHHH
Confidence 23345677 777888877776 77664433
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.011 Score=52.00 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=55.3
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcCC
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~~ 146 (391)
...++|.+++|+++..+ -+...+..++..... .++|+++|.||+|+.+... .+........+++..+.+|..+
T Consensus 93 ~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~ 171 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDR-RSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 171 (195)
T ss_dssp HHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred hhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCC
Confidence 35689999999998764 223334455544433 4789999999999975321 1122223345678888999988
Q ss_pred ccchHHHhhcc
Q 016339 147 KLGLDSLLQRL 157 (391)
Q Consensus 147 ~~~L~~ls~~i 157 (391)
+.+++.+-..+
T Consensus 172 ~~~v~~lf~~l 182 (195)
T 3cbq_A 172 HHNTRELFEGA 182 (195)
T ss_dssp TBSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88887765443
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0028 Score=56.11 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999998754
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.003 Score=55.94 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+++|.|++||||||+.+.|+...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998544
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0016 Score=71.52 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=45.7
Q ss_pred hCChhHH-hhhchhHHhhcCcccccccccccccccCC--CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 250 KVTKQSL-AQTFPEIKEMLKANEPAKCSFNNCLHLGE--PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 250 ~~~~~~l-~~~~p~~~~~LSgGq~qr~~iaralh~~e--P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+++..+ +++.+. .|||||+||++||+++ ..+ |.++|+| |+...+.++++|++|+..
T Consensus 490 ~vGL~~l~ldR~~~---tLSGGEkQRV~LA~aL-~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~ 555 (972)
T 2r6f_A 490 NVGLDYLTLSRSAG---TLSGGEAQRIRLATQI-GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL 555 (972)
T ss_dssp HHTCTTSBSSSBGG---GCCHHHHHHHHHHHHH-TTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT
T ss_pred hCCCCccccCCccc---cCCHHHHHHHHHHHHH-hhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhC
Confidence 4444433 455566 9999999999999999 776 5999999 788889999999999754
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.00099 Score=58.89 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=50.7
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHHhC--CCCEEEEEeCCCCCCHHHH--------------HHHHH
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAEST--GIPLTLALNKVELVDEEVL--------------NTWKS 130 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~~~--~~~~~lvlnK~Dl~~~~~~--------------~~~~~ 130 (391)
.+.+..+.++|.+++|+++..+.. ...+. .++...... ++|+++|+||+|+.+.... +....
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s-~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPAS-FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
Confidence 344456789999999999876532 22222 333333333 7899999999999764311 11112
Q ss_pred HHHhcCC-eeEEEEcCCccchHHHhh
Q 016339 131 RLHTWGY-EPLFCSVESKLGLDSLLQ 155 (391)
Q Consensus 131 ~~~~~g~-~~v~~s~~~~~~L~~ls~ 155 (391)
....+++ ..+.+|..++.+++.+-.
T Consensus 172 ~~~~~~~~~~~~vSA~~g~gi~~l~~ 197 (204)
T 3th5_A 172 MAKEIGAVKYLECSALTQRGLKTVFD 197 (204)
Confidence 2233444 556667666666665543
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0028 Score=56.86 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl 182 (391)
..++|+|++|||||||++.|+..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0033 Score=60.23 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCeeEEEEcCCccchHHHhhcc-cC--CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 127 TWKSRLHTWGYEPLFCSVESKLGLDSLLQRL-RD--QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 127 ~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i-~G--e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|...|+--.++.+ ++...+++.+...+ .| ..+.|.||+|+|||||+++|++..
T Consensus 26 ~~~~k~~p~~~~~i---~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 26 PWVEKYRPKNLDEV---TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CHHHHTCCSSTTTC---CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cHHHhcCCCCHHHh---hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45554433223322 46677888888777 33 348999999999999999998764
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.023 Score=56.46 Aligned_cols=81 Identities=22% Similarity=0.237 Sum_probs=49.9
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCHHHHH----HHHHHHHh---cCCeeEEEEc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLN----TWKSRLHT---WGYEPLFCSV 144 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~-~~~lvlnK~Dl~~~~~~~----~~~~~~~~---~g~~~v~~s~ 144 (391)
.++.+|.+++|+++..+...+...+ .+..+...+. ++++|+||+|+.+..... .+...+.. .++..+.+|.
T Consensus 103 ~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA 181 (410)
T 1kk1_A 103 GASLMDGAILVIAANEPCPRPQTRE-HLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISA 181 (410)
T ss_dssp CGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred hhhhCCEEEEEEECCCCCCChhHHH-HHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeC
Confidence 3568899999999987543444333 3334444455 688899999999865322 22233332 2456677777
Q ss_pred CCccchHHHh
Q 016339 145 ESKLGLDSLL 154 (391)
Q Consensus 145 ~~~~~L~~ls 154 (391)
.++.+++.+.
T Consensus 182 ~~g~gi~~L~ 191 (410)
T 1kk1_A 182 LHGANIDVLV 191 (410)
T ss_dssp TTTBSHHHHH
T ss_pred CCCCCHHHHH
Confidence 6666655443
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0013 Score=57.73 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=4.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|++|||||||+|.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999876
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0031 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|.|++||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0048 Score=54.00 Aligned_cols=86 Identities=10% Similarity=0.150 Sum_probs=54.3
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhc-CCeeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTW-GYEPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~-g~~~v~~s 143 (391)
....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+..+ .+........+ ++..+.+|
T Consensus 92 ~~~~~~~~d~iilV~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~S 170 (192)
T 2il1_A 92 TSAYYRSAKGIILVYDITKKE-TFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEAS 170 (192)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECB
T ss_pred HHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEe
Confidence 344567999999999987652 23334444433333 4789999999999965421 11112222333 67788889
Q ss_pred cCCccchHHHhhc
Q 016339 144 VESKLGLDSLLQR 156 (391)
Q Consensus 144 ~~~~~~L~~ls~~ 156 (391)
..++.+++++-..
T Consensus 171 A~~g~gi~~l~~~ 183 (192)
T 2il1_A 171 AKDNFNVDEIFLK 183 (192)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8888888776543
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0031 Score=55.98 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=21.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.-.++|+|++|||||||++.+.+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578999999999999999998643
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.003 Score=55.86 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999998754
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.011 Score=58.72 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=45.9
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCHHH----HHHHHHHHHh---cCCeeEEEEc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEV----LNTWKSRLHT---WGYEPLFCSV 144 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~-~~~lvlnK~Dl~~~~~----~~~~~~~~~~---~g~~~v~~s~ 144 (391)
-++++|.+++|+++..+...+...+ ++..++..+. ++++|+||+|+.+... .+...+.+.+ .++..+.+|.
T Consensus 101 ~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA 179 (408)
T 1s0u_A 101 GASLMDGAILVIAANEPCPQPQTKE-HLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISA 179 (408)
T ss_dssp TCSCCSEEEEEEETTSCSSCHHHHH-HHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC--
T ss_pred hHhhCCEEEEEEECCCCCCCchhHH-HHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeC
Confidence 3678999999999987643544443 3444566665 6889999999987532 2223333332 2345666666
Q ss_pred CCccchHHH
Q 016339 145 ESKLGLDSL 153 (391)
Q Consensus 145 ~~~~~L~~l 153 (391)
.++.+++.+
T Consensus 180 ~~g~gi~~L 188 (408)
T 1s0u_A 180 HHEANIDVL 188 (408)
T ss_dssp ----CHHHH
T ss_pred CCCCCHHHH
Confidence 655555443
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0031 Score=54.90 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997643
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0047 Score=54.06 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=54.3
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
....+.++|.+++|+++..|. ....+..++... ...++|+++|+||+|+.+..+ .+........+++..+.+|
T Consensus 92 ~~~~~~~~d~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 170 (196)
T 2atv_A 92 REGHMRWGEGFVLVYDITDRG-SFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECS 170 (196)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECC
T ss_pred hhhhhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEEC
Confidence 344567999999999987652 222233333222 235889999999999975321 1112223345678888888
Q ss_pred cCCcc-chHHHhhc
Q 016339 144 VESKL-GLDSLLQR 156 (391)
Q Consensus 144 ~~~~~-~L~~ls~~ 156 (391)
..++. +++.+-..
T Consensus 171 a~~g~~gi~~l~~~ 184 (196)
T 2atv_A 171 ACTGEGNITEIFYE 184 (196)
T ss_dssp TTTCTTCHHHHHHH
T ss_pred CCcCCcCHHHHHHH
Confidence 88877 77766443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 391 | ||||
| d1u0la2 | 225 | c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C | 2e-55 | |
| d1t9ha2 | 231 | c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C | 5e-52 | |
| d1t9ha1 | 67 | b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-t | 9e-07 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 8e-05 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 3e-04 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 4e-04 | |
| d1kgda_ | 178 | c.37.1.1 (A:) Guanylate kinase-like domain of Cask | 5e-04 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 5e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-04 | |
| d1wxqa1 | 319 | c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr | 8e-04 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 9e-04 | |
| d1u0la1 | 66 | b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-t | 0.001 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 0.001 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 0.001 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 0.001 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 0.001 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 0.002 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 0.002 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 0.002 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 0.004 |
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 179 bits (456), Expect = 2e-55
Identities = 74/252 (29%), Positives = 118/252 (46%), Gaps = 38/252 (15%)
Query: 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT 127
+ P VANVD ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L
Sbjct: 2 LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRK 61
Query: 128 WKSRLHTWG--YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHA 185
+ + Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 62 VRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINP---- 117
Query: 186 SDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ 245
RV EVS K RG+HTT LL GGY+ DTPGF
Sbjct: 118 ------------------GLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 159
Query: 246 PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQ 298
+ + + L F E +C F++C H+ EP C VK E RY+
Sbjct: 160 LEINDIEPEELKHYFKEF-------GDKQCFFSDCNHVDEPECGVKEAVENGEIAESRYE 212
Query: 299 YYFQLLDEIRIR 310
Y ++ E+ R
Sbjct: 213 NYVKMFYELLGR 224
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Score = 171 bits (434), Expect = 5e-52
Identities = 86/256 (33%), Positives = 126/256 (49%), Gaps = 39/256 (15%)
Query: 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---- 123
E++ PP+ NVD +L+FS QP L RFLV E+ I + + K++L++++
Sbjct: 2 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTED 61
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ + GY+ S + + L ++ +D+TTV G SGVGKSSL+NA+
Sbjct: 62 TIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISP-- 119
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
R E+S GRGKHTTRHV L+ S GG +ADTPGF
Sbjct: 120 --------------------ELGLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGF 158
Query: 244 NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------R 296
+ + ++ L TFP+I+E + C F CLHL EP C VK E R
Sbjct: 159 SSLEFTDIEEEELGYTFPDIREKS-----SSCKFRGCLHLKEPKCAVKQAVEDGELKQYR 213
Query: 297 YQYYFQLLDEIRIREE 312
Y +Y + + EI+ R+
Sbjct: 214 YDHYVEFMTEIKDRKP 229
|
| >d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 67 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Score = 43.5 bits (103), Expect = 9e-07
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS 66
++ + + C R + +K K LVGD VV + + D+ G + + +R+
Sbjct: 20 SEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERT 67
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 40.5 bits (93), Expect = 8e-05
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209
VI G GKSSL+NAL A + + + +
Sbjct: 5 VIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 51
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 149 GLDSLLQRLRDQTT-----VIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
GL S+L++L+ +++G GK++L+ L S + +
Sbjct: 1 GLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK 53
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 38.9 bits (89), Expect = 4e-04
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222
IVG VGKS+L NA+ + A + +P+ + + ++ V T R K
Sbjct: 12 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 71
Query: 223 TRH 225
Sbjct: 72 VEP 74
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 5e-04
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
V++G GVG+ + N L +
Sbjct: 7 VLLGAHGVGRRHIKNTLITK 26
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 38.0 bits (87), Expect = 5e-04
Identities = 15/52 (28%), Positives = 19/52 (36%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
VIVG VGKS+L+N L + A + I V T
Sbjct: 4 VIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDT 55
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 38.7 bits (89), Expect = 8e-04
Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 25/220 (11%)
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNW----FEPILGSKWFEDQRVGEVSTKSGRG 219
+VG VGKS+ +A ++ N+ E +G + + S
Sbjct: 5 VVGKPNVGKSTFFSAATLV-----DVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNP 59
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
++ L + + D G L E + + +
Sbjct: 60 QNYEYRNGLALIP--VKMVDVAG-------------LVPGAHEGRGLGNKFLDDLRMASA 104
Query: 280 CLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRY-KVGDMGVQQA 338
+H+ + + + Y+ + D + E +G +G ++ K + +
Sbjct: 105 LIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKL 164
Query: 339 EPRLEPKKHRRQSRKRINQSILDELDELDDDDNDDEIDLE 378
E + + + +L+ +D + DL
Sbjct: 165 ESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLL 204
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 37.7 bits (86), Expect = 9e-04
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 163 VIVGPSGVGKSSLINALRS 181
V+ GPS VGKS+++ LR
Sbjct: 6 VLSGPSAVGKSTVVRCLRE 24
|
| >d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 66 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 35.2 bits (81), Expect = 0.001
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQR 65
++TG +LC +R + ++ VGD+V + G+IENV R
Sbjct: 20 EETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHR 65
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.6 bits (86), Expect = 0.001
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
V+ GPSG GKS+L+ L
Sbjct: 4 VLSGPSGAGKSTLLKKLFQE 23
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 37.5 bits (86), Expect = 0.001
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
++ PSG GKSSLI AL +
Sbjct: 6 IVSAPSGAGKSSLIQALLKT 25
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 37.4 bits (85), Expect = 0.001
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 161 TTVIVGPSGVGKSSLINALRSS 182
T + G S VGKS+LI L
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGK 23
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 37.0 bits (84), Expect = 0.001
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 161 TTVIVGPSGVGKSSLINALRSSPHA 185
T +IVG VGKS+L N L A
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKKKA 26
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (84), Expect = 0.002
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
VI GPSG GKS+L+ L +
Sbjct: 5 VISGPSGTGKSTLLKKLFAE 24
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.6 bits (83), Expect = 0.002
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADV-DNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221
+ +G GK++L++ L++ A+ E +G+ F +G K
Sbjct: 4 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 63
Query: 222 TTRHV 226
V
Sbjct: 64 YFPEV 68
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 37.1 bits (85), Expect = 0.002
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 150 LDSLLQRLRDQ-----TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
L LL L+ + T +++G GVGKSS +N++ S + P++ S+
Sbjct: 18 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR 77
Query: 205 EDQRV 209
+
Sbjct: 78 AGFTL 82
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 35.5 bits (80), Expect = 0.004
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
IVG VGKS+L+N L A +
Sbjct: 9 AIVGKPNVGKSTLLNNLLG----VKVAPISPRP 37
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 391 | |||
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 100.0 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.96 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.96 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.95 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.95 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.95 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.95 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.95 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.94 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.93 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.93 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.93 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.92 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.92 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.92 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.92 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.91 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.91 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.89 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.85 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.84 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.63 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.9 | |
| d1t9ha1 | 67 | Probable GTPase EngC (YjeQ), N-terminal domain {Ba | 98.85 | |
| d1u0la1 | 66 | Probable GTPase EngC (YjeQ), N-terminal domain {Th | 98.83 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.61 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 98.18 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.04 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 97.83 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 97.83 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.81 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 97.79 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.65 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.62 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 97.62 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.58 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.51 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 97.49 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.44 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.39 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.38 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.38 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.38 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.36 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 97.33 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 97.31 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.3 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.26 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 97.25 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.25 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 97.22 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.21 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.21 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.18 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.16 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.16 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 97.13 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.13 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.11 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.1 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.1 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.08 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.07 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.03 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 97.02 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.02 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.01 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 97.0 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.97 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.97 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.95 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.95 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.93 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.89 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.88 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.84 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.82 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.82 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 96.78 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.75 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.75 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.73 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.72 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.67 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.66 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.65 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.65 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.64 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.63 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.61 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.59 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.57 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.57 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.56 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.56 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.55 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.54 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.52 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.5 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.49 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.48 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.46 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 96.45 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 96.45 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.45 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.45 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.45 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.44 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.41 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 96.41 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 96.4 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.4 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 96.4 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.39 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.38 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 96.38 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 96.37 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.37 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 96.37 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.37 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.35 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 96.34 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 96.34 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 96.33 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 96.33 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 96.33 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.32 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.31 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.31 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 96.29 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 96.26 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.25 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.25 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.22 | |
| d1ah9a_ | 71 | Translational initiation factor 1, IF1 {Escherichi | 96.21 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.2 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.2 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 96.18 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 96.18 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 96.17 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 96.15 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 96.13 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.13 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.13 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 96.11 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 96.11 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 96.11 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 96.1 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.09 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 96.09 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.07 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.06 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 96.06 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.05 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.04 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 96.04 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.02 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 96.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.98 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.97 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.97 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.94 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.93 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.93 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 95.92 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.91 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.91 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.9 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.88 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.85 | |
| d1hr0w_ | 71 | Translational initiation factor 1, IF1 {Escherichi | 95.81 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.79 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.76 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.76 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.7 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 95.67 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.67 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.63 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.6 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.57 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.55 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 95.53 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.53 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.53 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.52 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.52 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.52 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.52 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.5 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 95.45 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 95.39 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.37 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.37 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 95.36 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.3 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.29 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.26 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.26 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.25 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.24 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.24 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.22 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.21 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.2 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.18 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.17 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.14 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.14 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.09 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.06 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.06 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.01 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.99 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.99 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.98 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.97 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.97 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.95 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.94 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 94.94 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.93 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.93 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.92 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.9 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.89 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.88 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.85 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.83 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.8 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.78 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.72 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.71 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.66 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.65 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.55 | |
| d1d7qa_ | 143 | Translation initiation factor-1a, eIF1a {Human (Ho | 94.46 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 94.36 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.34 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 94.31 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.31 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.2 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.17 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.16 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 94.14 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.07 | |
| d1jt8a_ | 102 | Archaeal initiation factor-1a, aIF1a {Archaeon Met | 94.04 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.97 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.96 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.96 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.93 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.88 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.78 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.72 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.72 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 93.71 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.7 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.64 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.63 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.61 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.61 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.57 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 93.47 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.42 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.3 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 93.27 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.25 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 93.24 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.21 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.2 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.2 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.19 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.08 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.84 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.66 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.6 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.51 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.41 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.4 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 92.31 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.28 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.25 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.13 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.89 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.77 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 91.66 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.54 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.5 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.5 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.22 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.07 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.04 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.98 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.76 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.76 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.72 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.68 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.23 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 90.17 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.1 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 89.96 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.55 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.13 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.03 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.83 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 88.57 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 88.44 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 87.79 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 87.59 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 87.56 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.52 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.4 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 87.15 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.06 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.84 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 86.83 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 86.72 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.68 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 86.36 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.17 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.93 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 84.27 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.03 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 83.82 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 83.62 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 83.12 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 82.4 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 82.4 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 82.05 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 81.86 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 81.35 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 80.8 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 80.79 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 80.69 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 80.19 |
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.6e-45 Score=337.50 Aligned_cols=213 Identities=34% Similarity=0.591 Sum_probs=182.2
Q ss_pred cccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHH--HHhcCCeeEEEEc
Q 016339 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSR--LHTWGYEPLFCSV 144 (391)
Q Consensus 67 ~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~--~~~~g~~~v~~s~ 144 (391)
|.+.||+|||+|++++|+++.+|.+++.+|+|||+.|+.+|++++||+||+||.++++.+.|... ++..+|+.+.+|.
T Consensus 1 N~l~RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa 80 (225)
T d1u0la2 1 NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSA 80 (225)
T ss_dssp CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCT
T ss_pred CCcCCCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEecc
Confidence 56889999999999999999999999999999999999999999999999999998776666433 3357899999999
Q ss_pred CCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceee
Q 016339 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 145 ~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr 224 (391)
.++.+++.+...++|++++|+|+||||||||||.|.|.. .+.++.++...++|+|||+
T Consensus 81 ~~~~g~~~L~~~l~~kt~~~~G~SGVGKSTLiN~L~~~~----------------------~~~T~~vs~~~~rGrHTTt 138 (225)
T d1u0la2 81 KTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGL----------------------KLRVSEVSEKLQRGRHTTT 138 (225)
T ss_dssp TTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTC----------------------CCC-------------CCC
T ss_pred ccchhHhhHHHHhcCCeEEEECCCCCCHHHHHHhhcchh----------------------hhhccCcccccCCCCcccc
Confidence 999999999999999999999999999999999999977 4678899999999999999
Q ss_pred eEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHH
Q 016339 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERY 297 (391)
Q Consensus 225 ~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~ 297 (391)
+..++.++.+++++||||++...+..+..+++...||++. + +.|.|.+|.|.+||+|.|.+ ++.||
T Consensus 139 ~~~l~~l~~gg~iiDTPG~r~~~l~~~~~~~l~~~F~e~~---~----~~CkF~dC~H~~EpgCaVk~av~~g~i~~~Ry 211 (225)
T d1u0la2 139 TAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFG---D----KQCFFSDCNHVDEPECGVKEAVENGEIAESRY 211 (225)
T ss_dssp SCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSS---S----CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHH
T ss_pred ceeEEEECCCcEEEeCCccccccccccCcchhhhhhhhHH---h----CCCCCCCCCCCCCCCCHHHHHHHcCCCCHHHH
Confidence 9999999989999999999999988888899999999953 3 47999999999999999987 67899
Q ss_pred HHHHHHHHHHH
Q 016339 298 QYYFQLLDEIR 308 (391)
Q Consensus 298 ~~~~~ll~el~ 308 (391)
+.|+++++|+.
T Consensus 212 ~~Y~~l~~el~ 222 (225)
T d1u0la2 212 ENYVKMFYELL 222 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999974
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.5e-45 Score=341.82 Aligned_cols=215 Identities=39% Similarity=0.707 Sum_probs=178.7
Q ss_pred cccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHH----HHHHHHHHhcCCeeEEE
Q 016339 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL----NTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 67 ~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~----~~~~~~~~~~g~~~v~~ 142 (391)
|++.||+|||+|++++|+++.+|.+++.+|+|||+.|+.+|++++||+||+||.++++. +.|...|..+||+++.+
T Consensus 1 N~l~RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~ 80 (231)
T d1t9ha2 1 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT 80 (231)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCCCCCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceee
Confidence 57899999999999999999999999999999999999999999999999999986543 34556788899999999
Q ss_pred EcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcce
Q 016339 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (391)
Q Consensus 143 s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~t 222 (391)
|..++.+++.+.-.++|++++|+|+||||||||||+|.|.. .+.++.++...++|+||
T Consensus 81 Sa~~~~gl~~L~~~l~~~~~vl~G~SGVGKSSLiN~L~~~~----------------------~~~t~~vs~~~~rGrHT 138 (231)
T d1t9ha2 81 SSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPEL----------------------GLRTNEISEHLGRGKHT 138 (231)
T ss_dssp CHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC-----------------------------------------
T ss_pred ecCChhHHHHHHHhhccceEEEECCCCccHHHHHHhhccHh----------------------HhhhcccccccCCCcee
Confidence 99988999999888999999999999999999999999987 57788999999999999
Q ss_pred eeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHH
Q 016339 223 TRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWE 295 (391)
Q Consensus 223 tr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~ 295 (391)
|++..++..+ +++++||||++...++.+..+++...||++.... +.|.|.+|.|.+||+|.|.+ ++.
T Consensus 139 Tt~~~l~~~~-gg~iiDTPG~r~~~l~~~~~~~l~~~F~ei~~~~-----~~CkF~dC~H~~EpgCaV~~av~~g~i~~~ 212 (231)
T d1t9ha2 139 TRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFPDIREKS-----SSCKFRGCLHLKEPKCAVKQAVEDGELKQY 212 (231)
T ss_dssp CCCCCEEEET-TEEEESSCSCSSCCCTTCCHHHHGGGSHHHHHHG-----GGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred eeeEEEEecC-CCEEEECCccccccccccCcccchhhhhhHHHHh-----CCCCCCCCCCCCCCCchHHHHHHcCCCCHH
Confidence 9988887654 7899999999999988888899999999988764 58999999999999999986 788
Q ss_pred HHHHHHHHHHHHHH
Q 016339 296 RYQYYFQLLDEIRI 309 (391)
Q Consensus 296 ~~~~~~~ll~el~~ 309 (391)
||+.|+++++++.+
T Consensus 213 Ry~~Y~~l~~e~~~ 226 (231)
T d1t9ha2 213 RYDHYVEFMTEIKD 226 (231)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999753
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.96 E-value=3e-30 Score=240.10 Aligned_cols=156 Identities=17% Similarity=0.261 Sum_probs=129.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|++|||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|+++...+
T Consensus 7 I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~------------~p~sG~I~i~g~~i~~~~ 74 (239)
T d1v43a3 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE------------EPTEGRIYFGDRDVTYLP 74 (239)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSC
T ss_pred EEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCCCEEEEcceecccCC
Confidence 34689999999999999999999 99999999999999999999999999 999999999999987655
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
+. .+++++++|+.+.+ +.++ .+. ....+..+++.++.+++|. +||||||||
T Consensus 75 ~~-------~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSGGq~QR 144 (239)
T d1v43a3 75 PK-------DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA---QLSGGQRQR 144 (239)
T ss_dssp GG-------GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTT---TCCSSCHHH
T ss_pred cc-------cceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChh---hCCHHHHHH
Confidence 42 35689999885432 1111 111 1234667888889999999 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
++||||+ +.+|+++|+| |+.....+++++.+++++...
T Consensus 145 vaiAraL-~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~ 188 (239)
T d1v43a3 145 VAVARAI-VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 188 (239)
T ss_dssp HHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhh-ccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 9999999 9999999999 999999999999999876544
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.7e-30 Score=239.50 Aligned_cols=154 Identities=17% Similarity=0.211 Sum_probs=108.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+|++|||++ +|++++|+||||||||||+|+|+|+. +|++|+|+++|+++...+.
T Consensus 3 v~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~------------~p~sG~I~i~g~~i~~~~~- 69 (232)
T d2awna2 3 LQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE------------TITSGDLFIGEKRMNDTPP- 69 (232)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEESSSCCTTSCG-
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC------------CCCCCEEEECCEECCCCch-
Confidence 578999999999999999999 99999999999999999999999999 9999999999998865443
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-------cc--------cchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-------PG--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+++++++|++..+ +.++ .+ .....+..+++.+..+++|. +||||||||++
T Consensus 70 ------~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~---~LSGGqkQRva 140 (232)
T d2awna2 70 ------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK---ALSGGQRQRVA 140 (232)
T ss_dssp ------GGTCEEEECSSCCC---------------------CHHHHHHHHHHHHC------------------------C
T ss_pred ------hhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChh---hCCHHHHHHHH
Confidence 235688888875432 2222 11 12344567788888899999 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
||||+ +++|+++++| |+.....++++|.++.++...
T Consensus 141 iAraL-~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~ 182 (232)
T d2awna2 141 IGRTL-VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 182 (232)
T ss_dssp HHHHH-HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHH-hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999 9999999999 899999999999999776444
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.95 E-value=1.2e-29 Score=236.24 Aligned_cols=162 Identities=13% Similarity=0.146 Sum_probs=132.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++....
T Consensus 4 i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~------------~p~sG~I~~~g~~i~~~~ 71 (240)
T d1g2912 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE------------EPSRGQIYIGDKLVADPE 71 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEEEEEGG
T ss_pred EEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCC------------CCCCCEEEECCEEecccc
Confidence 34689999999999999999999 99999999999999999999999999 999999999999886654
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCC-----------cc--------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADT-----------PG--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dt-----------pg--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
... ..+...+++++++|+...+..-| .+ .....+..+++.++.+++|. +|||||+||
T Consensus 72 ~~~-~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~---~LSGGqkQR 147 (240)
T d1g2912 72 KGI-FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR---ELSGGQRQR 147 (240)
T ss_dssp GTE-ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGG---GSCHHHHHH
T ss_pred hhh-hcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChh---hCCHHHHHH
Confidence 321 11112467999999865432111 01 12234556778888899999 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
++||||+ +.+|+++|+| |+.....+++++.++.++...
T Consensus 148 v~IAraL-~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~ 191 (240)
T d1g2912 148 VALGRAI-VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV 191 (240)
T ss_dssp HHHHHHH-HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH-hcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCC
Confidence 9999999 9999999999 999999999999999876544
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.95 E-value=8.6e-30 Score=235.54 Aligned_cols=153 Identities=16% Similarity=0.259 Sum_probs=128.7
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++ .+|++|||++ +|++++|+||||||||||+|+|+|+. +|++|+|.|+|+++...+.
T Consensus 4 v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~------------~p~sG~I~~~G~~i~~~~~- 69 (229)
T d3d31a2 4 IESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH------------VPDSGRILLDGKDVTDLSP- 69 (229)
T ss_dssp EEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCH-
T ss_pred EEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCc------------CCCCCEEEEccEeccccch-
Confidence 4789999987 5899999999 99999999999999999999999999 9999999999998865443
Q ss_pred cCCCcceeeeEEEEeccCCCcc----cCC------------cccchHHHHhCChhHHhhhchhHHhhcCccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYL----ADT------------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l----~Dt------------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
..+++++++|++..+. .++ .......+..+++.++.+++|. +||||||||++|||
T Consensus 70 ------~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSGG~~QRvaiAr 140 (229)
T d3d31a2 70 ------EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL---TLSGGEQQRVALAR 140 (229)
T ss_dssp ------HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGG---GSCHHHHHHHHHHH
T ss_pred ------hHhcceeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChh---hCCHHHhcchhhhh
Confidence 2357889998865432 111 1123344567788888899999 99999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
|+ +++|+++++| |+.....+++++.++.++...
T Consensus 141 aL-~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~ 179 (229)
T d3d31a2 141 AL-VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179 (229)
T ss_dssp HT-TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred hh-hccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 99 9999999999 999999999999999876543
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.95 E-value=2.5e-29 Score=234.11 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=131.8
Q ss_pred CCeeEEEEc--CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 136 GYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~--~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.+++++++| ++..+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|+++...
T Consensus 5 ~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~------------~p~~G~I~~~g~~i~~~ 72 (242)
T d1oxxk2 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD------------VPSTGELYFDDRLVASN 72 (242)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS------------CCSEEEEEETTEEEEET
T ss_pred EEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCc------------CCCCceEEECCEEeecC
Confidence 457899999 4567999999999 89999999999999999999999999 99999999999998764
Q ss_pred ccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
+... .+...+++++++|++..+ +.++ .+. ....+..+++.+.++.+|. +|||||||
T Consensus 73 ~~~~--~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~---~LSGGqkQ 147 (242)
T d1oxxk2 73 GKLI--VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR---ELSGAQQQ 147 (242)
T ss_dssp TEES--SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG---GSCHHHHH
T ss_pred chhh--cchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChh---hCCHHHHh
Confidence 4321 122346799999986533 1121 111 2344667888889999999 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
|++||||+ +.+|+++|+| |+.....+++++.++.++...
T Consensus 148 RvaiARaL-~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~ 192 (242)
T d1oxxk2 148 RVALARAL-VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192 (242)
T ss_dssp HHHHHHHH-TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhHH-hhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCC
Confidence 99999999 9999999999 899999999999999776443
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=3e-29 Score=232.27 Aligned_cols=160 Identities=14% Similarity=0.231 Sum_probs=124.9
Q ss_pred CeeEEEEcCCc----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~~----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|+.+ .+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|+|+|.++..
T Consensus 4 i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~------------~p~sG~I~~~g~~i~~ 71 (230)
T d1l2ta_ 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD------------KPTEGEVYIDNIKTND 71 (230)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTT
T ss_pred EEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCC------------CCCcceeEECCEEcCc
Confidence 47899999654 4899999999 89999999999999999999999999 9999999999999876
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCC----------cccc--------hHHHHhCChh-HHhhhchhHHhhcC
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADT----------PGFN--------QPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt----------pg~~--------~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
.+.... .+...+++++++|++..+ +.++ ++.. ...+..+++. .+++.+|. +||
T Consensus 72 ~~~~~~-~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~---~LS 147 (230)
T d1l2ta_ 72 LDDDEL-TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN---QLS 147 (230)
T ss_dssp CCHHHH-HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG---GSC
T ss_pred CChhhc-chhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChh---hCC
Confidence 654321 011125689999985432 1111 1111 1223344553 35677888 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
|||+||++||||+ +.+|+++|+| |+.....++++|.++.++...
T Consensus 148 GGqkQRvaIAraL-~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~ 197 (230)
T d1l2ta_ 148 GGQQQRVAIARAL-ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGK 197 (230)
T ss_dssp HHHHHHHHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhh-hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999 9999999999 999999999999999765443
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.3e-29 Score=235.94 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=129.6
Q ss_pred CeeEEEEcCCc----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~~----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|+++ .+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 4 v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~------------~p~sG~I~~~g~~i~~ 71 (240)
T d3dhwc1 4 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------------RPTEGSVLVDGQELTT 71 (240)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEECT
T ss_pred EEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCc------------cccCCceEEcCeEeee
Confidence 57899999764 5899999999 89999999999999999999999999 9999999999999876
Q ss_pred cccccCCCcceeeeEEEEeccCCCcccCC-----------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADT-----------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~l~Dt-----------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+.... ....+++++++|+++.+...| .+. ....+..+++.+..+.+|. +|||||+
T Consensus 72 ~~~~~~--~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~---~LSGG~~ 146 (240)
T d3dhwc1 72 LSESEL--TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS---NLSGGQK 146 (240)
T ss_dssp TCHHHH--HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBS---CCCHHHH
T ss_pred CChhhh--hhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHHH
Confidence 554321 112357899999865331111 111 2244556778888899999 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
||++||||+ +.+|+++|+| |+.....++++|.+++++...
T Consensus 147 QRvaiAraL-~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~ 192 (240)
T d3dhwc1 147 QRVAIARAL-ASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192 (240)
T ss_dssp HHHHHHHHH-HTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhhhh-ccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCC
Confidence 999999999 9999999999 899999999999999876544
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=5.3e-28 Score=227.77 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=129.0
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+
T Consensus 3 Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~------------~p~~G~I~~~G~~i~~~~ 70 (258)
T d1b0ua_ 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE------------KPSEGAIIVNGQNINLVR 70 (258)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECCEEE
T ss_pred EEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCc------------cCCCCCEEECCEEeccCC
Confidence 34688999999999999999999 99999999999999999999999999 999999999999987665
Q ss_pred cccCCC--------cceeeeEEEEeccCCCccc----CC--------ccc--------chHHHHhCChhH-HhhhchhHH
Q 016339 214 TKSGRG--------KHTTRHVSLLPLSGGGYLA----DT--------PGF--------NQPSLLKVTKQS-LAQTFPEIK 264 (391)
Q Consensus 214 ~~~~~~--------~~ttr~i~~v~~~~~~~l~----Dt--------pg~--------~~~~l~~~~~~~-l~~~~p~~~ 264 (391)
...... +...++++++||++..+.. ++ .+. ....+..+++.+ ..+++|.
T Consensus 71 ~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~-- 148 (258)
T d1b0ua_ 71 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV-- 148 (258)
T ss_dssp CTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGG--
T ss_pred ccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcc--
Confidence 543211 1123679999998653311 11 011 122344566644 4567888
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+|||||+||++|||++ +.+|+++|+| |+.....++++|.+++++.
T Consensus 149 -~LSGG~~QRv~iAraL-~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g 199 (258)
T d1b0ua_ 149 -HLSGGQQQRVSIARAL-AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG 199 (258)
T ss_dssp -GSCHHHHHHHHHHHHH-HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred -cccHHHHHHHHHHHHH-hcCCCEEEeccccccCCHHHHHHHHHhhhhhcccC
Confidence 9999999999999999 9999999999 8999999999999997653
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.93 E-value=7.9e-28 Score=224.39 Aligned_cols=156 Identities=12% Similarity=0.159 Sum_probs=120.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|++|||.+ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++...+.
T Consensus 8 ev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~------------~p~~G~I~~~G~~i~~~~~ 75 (240)
T d1ji0a_ 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV------------RAQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTTCCH
T ss_pred EEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCccEEEecccccccccH
Confidence 3578999999999999999999 99999999999999999999999999 9999999999998865443
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC----------cccch----HHHHhC-ChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT----------PGFNQ----PSLLKV-TKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt----------pg~~~----~~l~~~-~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
... ....++++++....+ +.++ +.... ..+..+ ++.+..+.++. .||||||||+
T Consensus 76 ~~~----~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~LSGG~~Qrv 148 (240)
T d1ji0a_ 76 HVI----NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG---TLSGGEQQML 148 (240)
T ss_dssp HHH----HHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSS---SSCHHHHHHH
T ss_pred HHH----HHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchh---hCCHHHHHHH
Confidence 211 123467777654322 1111 00000 111122 33445556666 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+||||+ +++|+++|+| |+.....+++++++++++.
T Consensus 149 ~iAraL-~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g 189 (240)
T d1ji0a_ 149 AIGRAL-MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189 (240)
T ss_dssp HHHHHH-TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 999999 9999999999 9999999999999997653
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.93 E-value=8.1e-28 Score=226.21 Aligned_cols=156 Identities=16% Similarity=0.143 Sum_probs=123.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
..++++++|++..+|++|||++ +|++++|+||||||||||+|+|+|+. +|++|+|+++|.++...+.
T Consensus 6 ~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~------------~p~~G~I~~~g~~i~~~~~ 73 (254)
T d1g6ha_ 6 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL------------KADEGRVYFENKDITNKEP 73 (254)
T ss_dssp EEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTTCCH
T ss_pred EEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCC------------cCCCcEEEECCEeccchhH
Confidence 3578999999999999999999 99999999999999999999999999 9999999999998865443
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------------------c---------cchHHHHhCChhHHhhhchh
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------------------G---------FNQPSLLKVTKQSLAQTFPE 262 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------------------g---------~~~~~l~~~~~~~l~~~~p~ 262 (391)
... ....+++++|+...+ +.++- . .....+..+++....+.++.
T Consensus 74 ~~~----~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (254)
T d1g6ha_ 74 AEL----YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 149 (254)
T ss_dssp HHH----HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred HHH----HHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh
Confidence 211 123477777653211 11110 0 01122334566666777787
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
.||||||||++||||+ +.+|+++|+| |+.....+++++.+++++.
T Consensus 150 ---~LSgG~~Qrv~iAraL-~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g 200 (254)
T d1g6ha_ 150 ---ELSGGQMKLVEIGRAL-MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 200 (254)
T ss_dssp ---GSCHHHHHHHHHHHHH-HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred ---hCCcHHHHHHHHHHHH-HhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999 9999999999 8899999999999997653
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=8.1e-27 Score=217.21 Aligned_cols=155 Identities=14% Similarity=0.109 Sum_probs=123.7
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+|++|||++ +|++++|+||||||||||+|+|+|+. .|++|+|.++|.++...+..
T Consensus 5 v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~------------~p~~G~i~i~G~~i~~~~~~ 72 (238)
T d1vpla_ 5 VKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI------------KPSSGIVTVFGKNVVEEPHE 72 (238)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEETTTCHHH
T ss_pred EEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCCEEEECcEecccChHH
Confidence 578999999999999999999 99999999999999999999999999 99999999999887543321
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCc-----------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTP-----------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtp-----------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++..+.+..-+. +. .+..+..+++.+..+.++. .|||||+||++
T Consensus 73 ------~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~lSgG~~qrv~ 143 (238)
T d1vpla_ 73 ------VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS---TYSKGMVRKLL 143 (238)
T ss_dssp ------HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGG---GCCHHHHHHHH
T ss_pred ------HHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhh---hCCHHHHHHHH
Confidence 34568888887533211110 00 1112233455556666777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
||+|+ +++|+++++| |+.....+++++.+++++...
T Consensus 144 iA~al-~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~t 185 (238)
T d1vpla_ 144 IARAL-MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 185 (238)
T ss_dssp HHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHH-hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCE
Confidence 99999 9999999999 899999999999998765433
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.2e-26 Score=216.42 Aligned_cols=156 Identities=17% Similarity=0.234 Sum_probs=119.5
Q ss_pred CCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 136 GYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.|++|+++|. +..+|++|||.+ +|+++||+||||||||||+++|+|++ +|++|+|.++|.++...
T Consensus 3 ~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~g~~i~~~ 70 (241)
T d2pmka1 3 TFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY------------IPENGQVLIDGHDLALA 70 (241)
T ss_dssp EEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEETTTS
T ss_pred EEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC------------CCCCCEEEECCEEeccc
Confidence 4689999994 456899999999 99999999999999999999999999 99999999999998766
Q ss_pred ccccCCCcceeeeEEEEeccCC---CcccCC-----cccchHH----HHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGG---GYLADT-----PGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~---~~l~Dt-----pg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... .++.+++++|+.. +.+.++ +...... +...+..+....+|. ....|||||+
T Consensus 71 ~~~~-----lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~ 145 (241)
T d2pmka1 71 DPNW-----LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 145 (241)
T ss_dssp CHHH-----HHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHH
T ss_pred chhh-----hhceEEEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHH
Confidence 5432 4577999999742 222222 2222221 112222222222222 1138999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||++||||+ +.+|+++|+| |+.....+++.|.++.+
T Consensus 146 QRvalARal-~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~ 187 (241)
T d2pmka1 146 QRIAIARAL-VNNPKILIFDEATSALDYESEHVIMRNMHKICK 187 (241)
T ss_dssp HHHHHHHHH-TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhhh-hcccchhhhhCCccccCHHHHHHHHHHHHHHhC
Confidence 999999999 9999999999 89999999999998864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=1.7e-26 Score=214.42 Aligned_cols=149 Identities=13% Similarity=0.166 Sum_probs=119.6
Q ss_pred EEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCC
Q 016339 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~ 219 (391)
+.++|++..+ +|+|++.+++++|+||||||||||+++|+|+. +|++|+|+++|.++...+..
T Consensus 7 ~~k~~g~~~~--~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl~------------~p~~G~I~~~G~~i~~~~~~---- 68 (240)
T d2onka1 7 AEKRLGNFRL--NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIV------------KPDRGEVRLNGADITPLPPE---- 68 (240)
T ss_dssp EEEEETTEEE--EEEEEECSSEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCTT----
T ss_pred EEEEECCEEE--EEEEEeCCEEEEEECCCCChHHHHHHHHHcCC------------CCCceEEEECCEECCcCCHH----
Confidence 4566776554 68888877899999999999999999999999 99999999999988655432
Q ss_pred cceeeeEEEEeccCCCc----ccCCc-------------ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccc
Q 016339 220 KHTTRHVSLLPLSGGGY----LADTP-------------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 220 ~~ttr~i~~v~~~~~~~----l~Dtp-------------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh 282 (391)
.+.+++++|++..+ +.++- ......+..+++.++++.+|. +|||||+||++||||+
T Consensus 69 ---~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~---~LSGG~kQRvaiAral- 141 (240)
T d2onka1 69 ---RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA---RLSGGERQRVALARAL- 141 (240)
T ss_dssp ---TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGG---GSCHHHHHHHHHHHHH-
T ss_pred ---HcCceeeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChh---hCCHHHHHHHHHHHHH-
Confidence 24577777764322 11110 112334567788888999999 9999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+++|+++++| |+.....+++++.++.++...
T Consensus 142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~ 178 (240)
T d2onka1 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred hccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999 899999999999999876544
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.92 E-value=7.5e-27 Score=218.00 Aligned_cols=156 Identities=14% Similarity=0.214 Sum_probs=117.1
Q ss_pred CCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++|+++|++ ..+|++|||.+ +|+++||+||||||||||+++|+|++ +|++|+|.++|.++...+
T Consensus 3 e~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~g~~i~~~~ 70 (242)
T d1mv5a_ 3 SARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY------------QPTAGEITIDGQPIDNIS 70 (242)
T ss_dssp EEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS------------CCSBSCEEETTEESTTTS
T ss_pred EEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhh------------CCCCCEEEECCEEecccc
Confidence 35899999954 57999999999 89999999999999999999999999 999999999999987766
Q ss_pred cccCCCcceeeeEEEEeccCCC---cccCCc------ccchHH----HHhCChhHHhhhchhH--------HhhcCcccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG---YLADTP------GFNQPS----LLKVTKQSLAQTFPEI--------KEMLKANEP 272 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~---~l~Dtp------g~~~~~----l~~~~~~~l~~~~p~~--------~~~LSgGq~ 272 (391)
... .++++++++|+... .+.++- ...... +......+.....|.. ...|||||+
T Consensus 71 ~~~-----~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqk 145 (242)
T d1mv5a_ 71 LEN-----WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (242)
T ss_dssp CSC-----CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred HHH-----HHhheEEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHH
Confidence 532 45678899987432 222221 111111 1111222222222221 126999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||++||||+ +.+|+++|+| |+.....++++|.++.+
T Consensus 146 QRv~iARal-~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~ 187 (242)
T d1mv5a_ 146 QRLAIARAF-LRNPKILMLDEATASLDSESESMVQKALDSLMK 187 (242)
T ss_dssp HHHHHHHHH-HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHH-hcCCCEEEecCCccccCHHHHHHHHHHHHHHcC
Confidence 999999999 9999999999 77888899999998864
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.4e-26 Score=215.63 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=118.7
Q ss_pred cCCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++|+++|.+. .+|++|||.+ +|++++|+||||||||||+++|+|++ +|++|+|+++|.++.
T Consensus 12 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~------------~p~~G~I~i~g~~i~ 79 (251)
T d1jj7a_ 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY------------QPTGGQLLLDGKPLP 79 (251)
T ss_dssp EEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEGG
T ss_pred EEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhccc------------CCCcCEEEECCEecc
Confidence 4578999999653 4899999999 89999999999999999999999999 999999999999987
Q ss_pred ccccccCCCcceeeeEEEEeccCCC---cccCCc------ccchHH----HHhCChhHHhhhchh--------HHhhcCc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTP------GFNQPS----LLKVTKQSLAQTFPE--------IKEMLKA 269 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dtp------g~~~~~----l~~~~~~~l~~~~p~--------~~~~LSg 269 (391)
..+... .++++++++|+... .+.++- ...... .......+....+|. ....|||
T Consensus 80 ~~~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSG 154 (251)
T d1jj7a_ 80 QYEHRY-----LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSG 154 (251)
T ss_dssp GBCHHH-----HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCH
T ss_pred hhhhHH-----HHHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCCh
Confidence 665432 45779999987432 222211 111111 111122222222221 1127999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
||+||++||||+ +.+|+++|+| |+.....++++|.++.++.
T Consensus 155 GqkQRvaiARal-~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~ 201 (251)
T d1jj7a_ 155 GQRQAVALARAL-IRKPCVLILDDATSALDANSQLQVEQLLYESPERY 201 (251)
T ss_dssp HHHHHHHHHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGG
T ss_pred hHceEEEEeecc-ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhc
Confidence 999999999999 9999999999 8889999999998876543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.91 E-value=9.7e-26 Score=211.70 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=120.5
Q ss_pred cCCeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++|+++|.+. .+|++|||.+ +|+++||+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 14 I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~g~~i~~ 81 (253)
T d3b60a1 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY------------DIDEGHILMDGHDLRE 81 (253)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT------------CCSEEEEEETTEETTT
T ss_pred EEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc------------CCCccEEEECCcccch
Confidence 4578999999654 5899999999 89999999999999999999999999 9999999999999877
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCC------cccchH----HHHhCChhHHhhhchhH--------HhhcCcc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADT------PGFNQP----SLLKVTKQSLAQTFPEI--------KEMLKAN 270 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt------pg~~~~----~l~~~~~~~l~~~~p~~--------~~~LSgG 270 (391)
++... ..+.+++++|+...+ +.++ ...... .+...++.++...+|.- ...||||
T Consensus 82 ~~~~~-----~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGG 156 (253)
T d3b60a1 82 YTLAS-----LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 156 (253)
T ss_dssp BCHHH-----HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred hhhhh-----hhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHH
Confidence 65432 346688998874322 1111 112211 22233444444433321 1279999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||||+ +.+|+++|+| |+.....++++|.++..
T Consensus 157 qkQRvaiARal-~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~ 200 (253)
T d3b60a1 157 QRQRIAIARAL-LRDSPILILDEATSALDTESERAIQAALDELQK 200 (253)
T ss_dssp HHHHHHHHHHH-HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-hcCCCEEEeccccccCCHHHHHHHHHHHHHhcc
Confidence 99999999999 9999999999 88999999999999864
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.91 E-value=5.9e-26 Score=213.25 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=122.1
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|.+ ..+|++|||.+ +|++++|+||||||||||+++|+|++ .|++|+|.++|.++..
T Consensus 17 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~g~~i~~ 84 (255)
T d2hyda1 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY------------DVTSGQILIDGHNIKD 84 (255)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS------------CCSEEEEEETTEEGGG
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcC------------CccccccccCCEEccc
Confidence 557899999965 45999999999 89999999999999999999999999 9999999999999877
Q ss_pred cccccCCCcceeeeEEEEeccCC---CcccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
++... .++++++++|+.. +.+.++ |.... ..+...++.+....+|. ....|||||
T Consensus 85 ~~~~~-----lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 159 (255)
T d2hyda1 85 FLTGS-----LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 159 (255)
T ss_dssp SCHHH-----HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred CCHHH-----hhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHH
Confidence 65432 4577899998732 222222 22222 22334444444333332 123799999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||++||||+ +.+|+++|+| |+.....+++.|.++..
T Consensus 160 ~QRi~iARal-~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~ 202 (255)
T d2hyda1 160 KQRLSIARIF-LNNPPILILDEATSALDLESESIIQEALDVLSK 202 (255)
T ss_dssp HHHHHHHHHH-HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 88999999999988764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.89 E-value=4e-24 Score=193.95 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=110.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|+. .+|++|||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++....
T Consensus 3 lev~~ls~~y~~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~------------~p~~G~I~~~g~~i~~~~ 69 (200)
T d1sgwa_ 3 LEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL------------KPLKGEIIYNGVPITKVK 69 (200)
T ss_dssp EEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEGGGGG
T ss_pred EEEEEEEEEeCC-eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc------------ccCCCEEEECCEehhHhc
Confidence 346789999964 7899999999 99999999999999999999999999 999999999998875432
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC---------cccc----hHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT---------PGFN----QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt---------pg~~----~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
. .+.++++..... +.+. .... ...+..+++.++ ...+. +|||||+||++
T Consensus 70 ~----------~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~---~LSgG~~qrv~ 135 (200)
T d1sgwa_ 70 G----------KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLG---ELSQGTIRRVQ 135 (200)
T ss_dssp G----------GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGG---GSCHHHHHHHH
T ss_pred C----------cEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCccc-ccccC---cCCCcHHHHHH
Confidence 2 244444432110 0010 0001 112222332222 23344 89999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHh
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREE 312 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~ 312 (391)
||+++ +.+|+++|+| |+.....+++.+.++.++..
T Consensus 136 ia~al-~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~ 176 (200)
T d1sgwa_ 136 LASTL-LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 176 (200)
T ss_dssp HHHHT-TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHH-hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCC
Confidence 99999 9999999999 77888889988888765543
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.5e-22 Score=187.29 Aligned_cols=143 Identities=16% Similarity=0.138 Sum_probs=106.3
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeE
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i 226 (391)
.+|++|||+| +|++++|+||||||||||+++|+|+. |++|+|.|+|+++...+... .....
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-------------~~~G~I~~~g~~i~~~~~~~-----~~~~~ 74 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-------------SGKGSIQFAGQPLEAWSATK-----LALHR 74 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-------------CCSSEEEESSSBGGGSCHHH-----HHHHE
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-------------CCceEEEECCEECCcCCHHH-----HHhhc
Confidence 4799999999 99999999999999999999999964 57899999999875544321 22334
Q ss_pred EEEeccCCCccc----------CCc----ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC-------C
Q 016339 227 SLLPLSGGGYLA----------DTP----GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG-------E 285 (391)
Q Consensus 227 ~~v~~~~~~~l~----------Dtp----g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~-------e 285 (391)
.++++....... ..+ ......+..+++.+..+..+. .|||||+||++||+++ ++ +
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~LSgG~~Qrv~iA~al-~~~~p~~~p~ 150 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN---QLSGGEWQRVRLAAVV-LQITPQANPA 150 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGG---GCCHHHHHHHHHHHHH-HHHCTTTCTT
T ss_pred eeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChh---hcCHHHHHHHHHHHHH-HhhCcccCCC
Confidence 455544221110 011 111223335566666777777 9999999999999999 65 6
Q ss_pred CcEEEec------CHHHHHHHHHHHHHHHHHHh
Q 016339 286 PGCVVKG------DWERYQYYFQLLDEIRIREE 312 (391)
Q Consensus 286 P~~lllD------D~~~~~~~~~ll~el~~~~~ 312 (391)
|+++|+| |+.....+.+++++++++..
T Consensus 151 p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~ 183 (231)
T d1l7vc_ 151 GQLLLLDEPMNSLDVAQQSALDKILSALCQQGL 183 (231)
T ss_dssp CCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 7999999 89999999999999976543
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=2.7e-22 Score=190.73 Aligned_cols=140 Identities=17% Similarity=0.120 Sum_probs=98.0
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
++....+|++|||.+ +|+++||+||||||||||+++|+|++ +|++|.|.++|+ ++.+++.+...+.
T Consensus 45 ~~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~------------~p~~G~I~~~g~-i~~v~Q~~~l~~~ 111 (281)
T d1r0wa_ 45 CLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL------------EASEGIIKHSGR-VSFCSQFSWIMPG 111 (281)
T ss_dssp HHTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS------------CCSEEEEECCSC-EEEECSSCCCCSE
T ss_pred CCCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC------------cCCCcEEEECCE-EEEEeccccccCc
Confidence 345667999999999 99999999999999999999999999 999999999884 6777776654443
Q ss_pred ee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHH--------hhcCcccccccccccccccCCCcEEEec
Q 016339 222 TT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK--------EMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (391)
Q Consensus 222 tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~--------~~LSgGq~qr~~iaralh~~eP~~lllD 292 (391)
+- .++.+ +.. .+ .......+...........+|+.. ..|||||+||++||||+ +.+|+++|+|
T Consensus 112 tv~eni~~-----~~~-~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL-~~~p~illLD 183 (281)
T d1r0wa_ 112 TIKENIIF-----GVS-YD-EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAV-YKDADLYLLD 183 (281)
T ss_dssp EHHHHHTT-----TSC-CC-HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHH-HSCCSEEEEE
T ss_pred eeeccccc-----ccc-cc-chHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHH-HhCccchhhc
Confidence 32 22211 110 00 001111222222222222332211 26999999999999999 9999999999
Q ss_pred ------CHHHHHHHHHH
Q 016339 293 ------DWERYQYYFQL 303 (391)
Q Consensus 293 ------D~~~~~~~~~l 303 (391)
|+.....+++.
T Consensus 184 EPts~LD~~~~~~i~~~ 200 (281)
T d1r0wa_ 184 SPFGYLDVFTEEQVFES 200 (281)
T ss_dssp SCCCSSCHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHH
Confidence 77777777654
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.63 E-value=2.7e-16 Score=148.06 Aligned_cols=143 Identities=24% Similarity=0.359 Sum_probs=104.3
Q ss_pred cccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~ 149 (391)
+..+.++|.++.|..+..|... ...+++++ .+++.++|+||+||++++..+.|..+|+..++..+.++..+..+
T Consensus 10 ~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~ 84 (273)
T d1puja_ 10 TEKLKLIDIVYELVDARIPMSSRNPMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQG 84 (273)
T ss_dssp HHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTT
T ss_pred HHHHHhCCEEEEEEECCCCCCCCCHHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCC
Confidence 3467899999999999988443 45667776 38999999999999999999999999998888999888876655
Q ss_pred hHHHhhcc------------------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 150 LDSLLQRL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 150 L~~ls~~i------------------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
...+.-.+ .+-.++|+|.++||||||||.|.|.. ...
T Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~-------------------------~~~ 139 (273)
T d1puja_ 85 LNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKN-------------------------IAK 139 (273)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSC-------------------------CC-
T ss_pred ccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccc-------------------------eEE
Confidence 44332111 24468999999999999999999976 234
Q ss_pred cccccCCCcceeeeEEEEeccCCCcccCCcccchHH
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~ 247 (391)
++..+| +|++++.+......++.||||+..+.
T Consensus 140 ~~~~pG----~Tr~~~~i~~~~~~~l~DTPGi~~p~ 171 (273)
T d1puja_ 140 TGDRPG----ITTSQQWVKVGKELELLDTPGILWPK 171 (273)
T ss_dssp ---------------CCEEETTTEEEEECCCCCCSC
T ss_pred ECCccc----ccccceEEECCCCeEEecCCCccccC
Confidence 455556 78888888877777899999987653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.90 E-value=1.2e-10 Score=100.05 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=59.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCc--ceeeeEEEEeccCCCccc
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK--HTTRHVSLLPLSGGGYLA 238 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~--~ttr~i~~v~~~~~~~l~ 238 (391)
.++|+||||||||||++.|+|.+ .+..|.+...+..........+..- ........... ..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 64 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERL------------GKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK-----FF 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH------------GGGEEEEEEEEEC------CCEEEEEETTCCEEEEEET-----TC
T ss_pred EEEEECCCCcHHHHHHHHHHhcC------------CCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhh-----hh
Confidence 47999999999999999999998 8888888776544322221110000 00000001000 00
Q ss_pred CCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecC
Q 016339 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD 293 (391)
Q Consensus 239 Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD 293 (391)
...... ...+. +... ..+++|++++.++++++ ...|+++++|+
T Consensus 65 ~~~~~~----~~~~~----~~~~---~~~~~~~~~~~~l~~~~-~~~~~vlllDE 107 (178)
T d1ye8a1 65 TSKKLV----GSYGV----NVQY---FEELAIPILERAYREAK-KDRRKVIIIDE 107 (178)
T ss_dssp CCSSEE----TTEEE----CHHH---HHHHHHHHHHHHHHHHH-HCTTCEEEECC
T ss_pred hhhhhh----hhhhc----Ccch---hhhhhhhhHHHHHHHHH-hcCCCceeecC
Confidence 010000 00000 0111 15788999999999999 99999999993
|
| >d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.85 E-value=1.6e-09 Score=79.68 Aligned_cols=47 Identities=28% Similarity=0.469 Sum_probs=41.7
Q ss_pred CCCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccc
Q 016339 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS 66 (391)
Q Consensus 18 ~~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~ 66 (391)
..++..+.|++||+||+.+..|+|||||.++..+ ++.|+|++|+||.
T Consensus 21 ~~~g~~~~C~~RGk~r~~~~~p~VGD~V~~~~~~--~~~g~I~~I~pRt 67 (67)
T d1t9ha1 21 EDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERT 67 (67)
T ss_dssp SSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECCCS
T ss_pred cCCCcEEEEEEceeEecCCCccCcCcEEEEEEcc--CCeEEEEEEecCC
Confidence 3567889999999999988899999999999765 6789999999994
|
| >d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.83 E-value=1.5e-09 Score=79.67 Aligned_cols=54 Identities=28% Similarity=0.500 Sum_probs=45.5
Q ss_pred CCCcccCCCCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccc
Q 016339 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS 66 (391)
Q Consensus 11 ~~~~~~~~~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~ 66 (391)
+-|.+....++..+.|++||+|++.+..++|||+|.+++.+ ++.|+|++|+||+
T Consensus 13 ~~y~V~~~e~g~~~~c~~rG~lr~~~~~~~VGD~V~~~~~~--~~~g~I~~I~pRk 66 (66)
T d1u0la1 13 NMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRK 66 (66)
T ss_dssp TEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEECCC--SSSEEEEEECCCS
T ss_pred CEEEEEECCCCcEEEEEeeccccccCCccccCCEEEEEECC--CCeEEEEEEcCCC
Confidence 33445555678899999999999888899999999999765 6789999999996
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.18 E-value=4.6e-07 Score=77.40 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.04 E-value=1.3e-06 Score=80.02 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=22.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|.+|||||||+|.|.|..
T Consensus 33 l~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999975
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=97.83 E-value=3.7e-06 Score=71.75 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 016339 162 TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+||+|.+|||||||+|.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999875
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.83 E-value=5.4e-06 Score=70.63 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+|.+|||||||+|.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.81 E-value=6.3e-06 Score=71.18 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999864
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.79 E-value=2.2e-06 Score=73.44 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 016339 162 TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+||+|++|||||||+|.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998864
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=1.9e-05 Score=65.54 Aligned_cols=25 Identities=44% Similarity=0.582 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|-.++|+|++|||||||+|.|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999875
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=1.2e-05 Score=68.93 Aligned_cols=25 Identities=40% Similarity=0.699 Sum_probs=22.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|++++|+||||||||||++.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999998654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.62 E-value=2.3e-05 Score=76.05 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=22.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|.+|||||||+|+|.|..
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999999975
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.58 E-value=1.9e-05 Score=67.18 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|+|+|..
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999865
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=2e-05 Score=65.46 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+|+||||||||++.|+..+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.49 E-value=4.7e-06 Score=69.31 Aligned_cols=23 Identities=48% Similarity=0.665 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||+|+|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=2.7e-05 Score=65.64 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+|.+|||||||||+|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=3.7e-05 Score=67.74 Aligned_cols=26 Identities=42% Similarity=0.630 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|.+++|+||||||||||++.|+-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999997643
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.38 E-value=4e-05 Score=63.90 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|++++|.|||||||||+.+.|+...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998765
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.38 E-value=2.9e-05 Score=64.80 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=22.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.++|.||+|||||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999999765
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.36 E-value=4e-05 Score=64.45 Aligned_cols=23 Identities=48% Similarity=0.654 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+|++|||||||+|.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.33 E-value=3.9e-05 Score=66.19 Aligned_cols=23 Identities=35% Similarity=0.691 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+|++|||||||||.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=3.8e-05 Score=64.58 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|+|.+..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.30 E-value=4.8e-05 Score=62.10 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.26 E-value=6.3e-05 Score=62.88 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++++|.|++||||||+++.|+-.+
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999997654
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=97.25 E-value=5.6e-05 Score=61.83 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=6.1e-05 Score=62.65 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.2
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++.|+|||||||||+.+.|+..+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.22 E-value=6.6e-05 Score=62.77 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=21.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|||++|||||||+|.|.+-.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998865
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.21 E-value=6.8e-05 Score=62.83 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++++|+|++|||||||++.|...+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 478999999999999999988765
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=97.21 E-value=6.7e-05 Score=61.70 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||||.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=4.1e-06 Score=70.92 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=24.6
Q ss_pred HHHhhcccCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 151 ~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
++..+.+...+++|+|||||||||+|.+|.-.
T Consensus 16 ~~~~i~f~~~~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 16 FARTFDLDELVTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEECHHHHHHHHHSCCSHHHHHHHHHHHHH
T ss_pred eeEEEEcCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34444554458999999999999999998743
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.16 E-value=8.3e-05 Score=60.72 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhc
Q 016339 160 QTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~g 181 (391)
+++.|.||||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998754
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.16 E-value=9e-05 Score=61.49 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.2
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|-++.|+|+|||||||+-+.|+-.+
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=97.13 E-value=5.1e-05 Score=66.67 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|..++|||||++.|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.13 E-value=0.00011 Score=60.88 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=23.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++.|.|+|||||||+.+.|+..+
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999876
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.11 E-value=9.6e-05 Score=60.90 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999765
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=9.6e-05 Score=60.12 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+.|+||+||||||+-+.|+-.+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.10 E-value=0.00012 Score=60.82 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|-.++|.||+||||||+.+.|+-.+
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998755
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.00012 Score=62.68 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.++|+||||||||||++.|+...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 679999999999999999998543
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.00011 Score=61.15 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=21.8
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+.|.||+|+|||||++.++..+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 458999999999999999999876
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.03 E-value=0.00013 Score=60.43 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+||+||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999997654
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.02 E-value=0.00084 Score=56.81 Aligned_cols=83 Identities=12% Similarity=0.200 Sum_probs=54.8
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHh-----c---CCeeEEEEc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-----W---GYEPLFCSV 144 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~-----~---g~~~v~~s~ 144 (391)
.++.+|.+++|+.+..+ ..+.. ...+..+...++|+++|+||+|+++.++.......++. . +.+.+.+|+
T Consensus 79 ~l~~~d~~ilv~d~~~g-~~~~~-~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA 156 (179)
T d1wb1a4 79 AADIIDLALIVVDAKEG-PKTQT-GEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 156 (179)
T ss_dssp HTTSCCEEEEEEETTTC-SCHHH-HHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred hhhhccccccccccccc-cchhh-hhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence 45678998888887754 33322 33445567889999999999999988654332222211 1 235677888
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++++.-.|
T Consensus 157 ~~g~gi~eL~~~I 169 (179)
T d1wb1a4 157 KTGFGVDELKNLI 169 (179)
T ss_dssp TTCTTHHHHHHHH
T ss_pred cCCcCHHHHHHHH
Confidence 8888877765433
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.02 E-value=0.00015 Score=61.41 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=21.7
Q ss_pred cCC-EEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQ-TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge-~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|. ++||-||+|||||||.+.|.-..
T Consensus 20 ~~~~iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 444 68899999999999999998643
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.0001 Score=67.51 Aligned_cols=26 Identities=46% Similarity=0.823 Sum_probs=21.8
Q ss_pred ccCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 157 LRDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 157 i~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+...+++|+|||||||||+|.+|.-.
T Consensus 22 f~~~lnvlvG~NgsGKS~iL~Ai~~~ 47 (308)
T d1e69a_ 22 FSDRVTAIVGPNGSGKSNIIDAIKWV 47 (308)
T ss_dssp CCSSEEEEECCTTTCSTHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34458999999999999999998543
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.00 E-value=0.00016 Score=61.54 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.+||+|+++||||||+|.|.+..
T Consensus 6 inIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 6 INLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEEeCCCCcHHHHHHHHHHhc
Confidence 358999999999999999999864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.97 E-value=0.00015 Score=62.19 Aligned_cols=23 Identities=48% Similarity=0.704 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-++|+||||||||||++.|+...
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999997654
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.95 E-value=0.00016 Score=62.51 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.++|+|++|||||||+|.|.+-.
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.95 E-value=0.00018 Score=59.67 Aligned_cols=23 Identities=13% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999998864
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.93 E-value=0.00018 Score=63.10 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
+++|+||.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.89 E-value=0.00022 Score=60.93 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+++|+||+||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.88 E-value=0.00024 Score=59.29 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|.+|||||||+|.|.+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.00013 Score=61.72 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.++.|+|+|||||||+-+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57788999999999999999998654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.82 E-value=0.00025 Score=59.33 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++++|.|++||||||+++.|+..+
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999998765
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.82 E-value=0.00024 Score=61.22 Aligned_cols=22 Identities=45% Similarity=0.762 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+||||||||||++.|+..
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999998754
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=96.78 E-value=0.00053 Score=63.17 Aligned_cols=48 Identities=27% Similarity=0.232 Sum_probs=30.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
+-.+||||.++||||||+|+|++...+....+.-....|..|.+.+.+
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 346999999999999999999976421111111111245556665544
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=96.75 E-value=0.00032 Score=58.67 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999997754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.75 E-value=0.0022 Score=54.41 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=52.9
Q ss_pred ccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHH-h----cCCeeEEEEcCCcc
Q 016339 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-T----WGYEPLFCSVESKL 148 (391)
Q Consensus 74 ~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-~----~g~~~v~~s~~~~~ 148 (391)
+.++|.+++++.+..+ +... -..++..+...++|+++|+||+|+.++.+.+.....+. . ...+.+.+|..++.
T Consensus 103 ~~~~~~vi~viD~~~~-~~~~-~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~ 180 (195)
T d1svia_ 103 REELKAVVQIVDLRHA-PSND-DVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKK 180 (195)
T ss_dssp CTTEEEEEEEEETTSC-CCHH-HHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCT
T ss_pred ccchhhhhhhhhcccc-cccc-ccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCCCC
Confidence 4578988888877665 3332 23444455788999999999999987765444333332 1 23456777877777
Q ss_pred chHHHhh
Q 016339 149 GLDSLLQ 155 (391)
Q Consensus 149 ~L~~ls~ 155 (391)
+++++-.
T Consensus 181 gi~el~~ 187 (195)
T d1svia_ 181 GKDEAWG 187 (195)
T ss_dssp THHHHHH
T ss_pred CHHHHHH
Confidence 7777643
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.73 E-value=0.0013 Score=55.17 Aligned_cols=85 Identities=26% Similarity=0.291 Sum_probs=57.1
Q ss_pred cccccceeEEEEEecCCCCCH-HHHHHHHHH--HHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccc
Q 016339 73 PVANVDHLLLLFSMDQPKLEP-FALTRFLVE--AESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~-~~l~r~L~~--a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~ 149 (391)
.+..+|.++.+.......... .....++.. ....++++++|+||+|+.++++.+...+.+...+++.+.+|..++.+
T Consensus 76 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~g 155 (180)
T d1udxa2 76 HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAG 155 (180)
T ss_dssp HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred HHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCC
Confidence 356888776666654321221 122222221 23456899999999999999877777677777788889999888888
Q ss_pred hHHHhhcc
Q 016339 150 LDSLLQRL 157 (391)
Q Consensus 150 L~~ls~~i 157 (391)
++.+...+
T Consensus 156 id~L~~~i 163 (180)
T d1udxa2 156 LPALKEAL 163 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87765444
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.72 E-value=0.0013 Score=54.82 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=51.2
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCCccchH
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGLD 151 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~~~~L~ 151 (391)
.+.++|.++++.....+ +.. ....++...+..++|+++|+||+|+.++.+. .....+...++ +.+.+|..++.+++
T Consensus 77 ~~~~ad~i~~~~~~~~~-~~~-~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~i~iSAk~g~gid 153 (171)
T d1mkya1 77 MIREADLVLFVVDGKRG-ITK-EDESLADFLRKSTVDTILVANKAENLREFER-EVKPELYSLGFGEPIPVSAEHNINLD 153 (171)
T ss_dssp HHTTCSEEEEEEETTTC-CCH-HHHHHHHHHHHHTCCEEEEEESCCSHHHHHH-HTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred ccccCcEEEEeeccccc-ccc-cccccccccccccccccccchhhhhhhhhhh-HHHHHHHhcCCCCeEEEecCCCCCHH
Confidence 45789988777776554 222 1222333346778999999999999765433 22334445555 55777877777777
Q ss_pred HHhhc
Q 016339 152 SLLQR 156 (391)
Q Consensus 152 ~ls~~ 156 (391)
.+-..
T Consensus 154 ~L~~~ 158 (171)
T d1mkya1 154 TMLET 158 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65433
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.67 E-value=0.00044 Score=59.20 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.++.|+||+||||||+.+.|+-.+
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998765
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.66 E-value=0.00036 Score=58.25 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++||||||+-++|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.65 E-value=0.00046 Score=58.71 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=21.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|-.++|+||+||||||+.+.|+-.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH
Confidence 3667889999999999999999943
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.00041 Score=57.76 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||||.+.+-.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.64 E-value=0.00039 Score=58.18 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||++.+.+-.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHcCC
Confidence 37999999999999999988643
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.63 E-value=0.00043 Score=65.42 Aligned_cols=23 Identities=39% Similarity=0.784 Sum_probs=20.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHh
Q 016339 158 RDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
.+.+++|+|||||||||+|.+|.
T Consensus 24 ~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 24 ESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999984
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.61 E-value=0.00042 Score=57.53 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||++.|.+-.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999987754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.59 E-value=0.0015 Score=54.70 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=48.5
Q ss_pred cccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHH-hcCC-eeEEEEcCCccc
Q 016339 73 PVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-TWGY-EPLFCSVESKLG 149 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-~~g~-~~v~~s~~~~~~ 149 (391)
.++++|.+++|+.+..+... ...+.+.+.. ...++|+++|+||+|+....+ .+...+. .++. +.+.+|..++.+
T Consensus 81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~-~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~~~g 157 (178)
T d1wf3a1 81 ALADVNAVVWVVDLRHPPTPEDELVARALKP-LVGKVPILLVGNKLDAAKYPE--EAMKAYHELLPEAEPRMLSALDERQ 157 (178)
T ss_dssp HTSSCSEEEEEEETTSCCCHHHHHHHHHHGG-GTTTSCEEEEEECGGGCSSHH--HHHHHHHHTSTTSEEEECCTTCHHH
T ss_pred ccccccceeeeechhhhhcccccchhhheec-cccchhhhhhhcccccccCHH--HHHHHHHhhcccCceEEEecCCCCC
Confidence 46899999999988776322 2233444321 234679999999999987543 2222222 2333 566777777766
Q ss_pred hHHHh
Q 016339 150 LDSLL 154 (391)
Q Consensus 150 L~~ls 154 (391)
++.+-
T Consensus 158 i~~L~ 162 (178)
T d1wf3a1 158 VAELK 162 (178)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.57 E-value=0.00044 Score=58.01 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.8
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+.|+|++||||||+-+.|+-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999998654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.57 E-value=0.00051 Score=57.63 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997543
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.56 E-value=0.0005 Score=58.73 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++++|.||||||||.+.|+...
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.56 E-value=0.00048 Score=57.20 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|++|||||||+|.+.+-
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988753
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.55 E-value=0.00047 Score=58.71 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.54 E-value=0.0005 Score=57.43 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 016339 162 TVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl 182 (391)
++++|++||||||||+.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 899999999999999998764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.00053 Score=64.45 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+.-+++|.||+|||||||++.|...
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999854
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.50 E-value=0.00058 Score=58.40 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+||+||||||+.+.|+..+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999766
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.00054 Score=57.53 Aligned_cols=23 Identities=39% Similarity=0.717 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||++.+.+-.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37999999999999999987643
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.0006 Score=59.06 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++||-|++|||||||.+.|.-..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.46 E-value=0.0006 Score=56.85 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 016339 162 TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++|+|++||||||+-+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998665
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=96.45 E-value=0.00048 Score=62.91 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|+.|+|||||+.+|+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 589999999999999999954
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.45 E-value=0.0006 Score=63.13 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+||||.++||||||+|+|.|..
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 38999999999999999999874
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.00065 Score=56.43 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl 182 (391)
..++|+|++||||||||+.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHhC
Confidence 35899999999999999998754
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.45 E-value=0.00066 Score=57.35 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.00069 Score=56.40 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|.+||||||||+.+.+-
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.44 E-value=0.00064 Score=59.56 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=26.3
Q ss_pred ccchHHHhhcc---cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRL---RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i---~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+++.+.-.+ +-..+.|.||+|+|||||+++|+...
T Consensus 30 ~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 30 EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34444444444 22358899999999999999998754
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.41 E-value=0.00073 Score=57.24 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=21.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
....+.++|++||||||+.+.++..
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999988654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.00066 Score=56.87 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++||||||||+.+.+-.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37899999999999999987653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.00074 Score=57.12 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||++.+.+-.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37899999999999999998643
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.00072 Score=57.50 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+||+||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998644
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.00069 Score=56.27 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||++.+.+-.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999998653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.39 E-value=0.00083 Score=58.65 Aligned_cols=38 Identities=29% Similarity=0.450 Sum_probs=28.1
Q ss_pred CCccchHHHhhccc-C--CEEEEEecCCCcHHHHHHHHhcC
Q 016339 145 ESKLGLDSLLQRLR-D--QTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 145 ~~~~~L~~ls~~i~-G--e~vaLvGpSGsGKSTLLn~L~gl 182 (391)
++..+++.|.-.++ + ..+.|.||+|+|||||+++|+..
T Consensus 16 g~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 16 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHH
Confidence 44455666665562 2 24789999999999999999865
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.38 E-value=0.00062 Score=60.49 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.+.|.||+|||||||.++|++..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999876
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.38 E-value=0.00075 Score=55.96 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++|.+|||||||++.+.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37899999999999999988653
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.00076 Score=56.29 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+||||||||+.+.+-.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~~ 29 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQGL 29 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37999999999999999998643
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.0011 Score=55.79 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|+++.|.||+|+|||||...++..
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 7899999999999999999877754
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.37 E-value=0.0071 Score=52.03 Aligned_cols=83 Identities=23% Similarity=0.249 Sum_probs=54.1
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCHHHHHHH----HHHHHhcC---CeeEEEEc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLNTW----KSRLHTWG---YEPLFCSV 144 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~-~~~lvlnK~Dl~~~~~~~~~----~~~~~~~g---~~~v~~s~ 144 (391)
.++.+|.+++|.++........ -...+..+...|+ ++++++||+|+++..+.... ...+...+ +..+.+|.
T Consensus 106 ~~~~ad~ailvVda~~gi~~~~-t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA 184 (205)
T d2qn6a3 106 GAALMDGAILVVAANEPFPQPQ-TREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 184 (205)
T ss_dssp TSSCCSEEEEEEETTSCSSCHH-HHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred ceeccccccccccccccccchh-HHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeC
Confidence 3578999999999877533433 3345556677787 56777999999988643322 22222222 34677888
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++++...
T Consensus 185 ~~g~nI~~L~e~ 196 (205)
T d2qn6a3 185 LHKINIDSLIEG 196 (205)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCChHHHHHH
Confidence 888877776543
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.37 E-value=0.00072 Score=57.14 Aligned_cols=22 Identities=45% Similarity=0.753 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|.+|||||||++.+.+-
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999998864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.0008 Score=56.15 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|.+||||||||+.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.00086 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 37899999999999999998865
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.00088 Score=56.04 Aligned_cols=21 Identities=43% Similarity=0.767 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 016339 162 TVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl 182 (391)
++|+|++|||||||||.+..-
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999988764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.00079 Score=55.90 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+||||||||+.+.+-.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37899999999999999988643
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.00083 Score=55.48 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||||.+.+-.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999988643
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=96.33 E-value=0.00072 Score=56.99 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=20.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||++.|.+-.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999987654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.32 E-value=0.00085 Score=62.23 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=22.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++..+.|+||+|||||+|.++|+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 45668899999999999999999764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.001 Score=57.57 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|++++|-|+.||||||+++.|...
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999998854
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.00093 Score=56.15 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+||+||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998544
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.29 E-value=0.0016 Score=59.26 Aligned_cols=49 Identities=35% Similarity=0.289 Sum_probs=30.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
-.+||||-++||||||+|+|++... ....+.-....|.-|.+.+.+.++
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~-~~~~ypf~ti~pn~gvv~v~d~r~ 51 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPRL 51 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCC-ccccCCCCCCCCceEEEecccHhH
Confidence 3689999999999999999997641 111111122245567766554443
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.26 E-value=0.00086 Score=59.18 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
++-++||+|.++||||||+|.|.+.
T Consensus 4 r~p~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 4 RSPIVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCccHHHHHHHHHhh
Confidence 3446999999999999999999875
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.25 E-value=0.00094 Score=58.78 Aligned_cols=23 Identities=26% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.|.||+|+||||+.++|++..
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=96.25 E-value=0.00088 Score=55.98 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++||||||||+.+..-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.22 E-value=0.0011 Score=55.90 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997544
|
| >d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Translational initiation factor 1, IF1 species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0021 Score=46.59 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=42.4
Q ss_pred eEeccCCCCCcccCCCCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEE
Q 016339 4 IVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (391)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (391)
+++.-|...+.. .-.+|.+.+|.++|+++|.+..+.+||.|.++..++...+|-|.
T Consensus 12 V~e~lg~~~f~V-~l~ng~~~~a~i~Gkmrk~ri~i~~GD~V~Vel~pyd~~kgrIi 67 (71)
T d1ah9a_ 12 VLETLPNTMFRV-ELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp EEEECSSSEEEE-EETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEEC
T ss_pred EEEEcCCCEEEE-EeCCCCEEEEEccchhheeEEEecCCCEEEEEECccCCCcEEEE
Confidence 344444444432 23578889999999999888899999999999888777777664
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.20 E-value=0.00092 Score=56.87 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-+++|-|+.||||||+++.|....
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998765
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.20 E-value=0.0011 Score=58.17 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.|.||+|+||||+.++|+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhcc
Confidence 47899999999999999999765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0011 Score=56.09 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|.+||||||||+.+..-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0011 Score=55.75 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++|.+||||||||+.|.+-.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999988743
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.17 E-value=0.0011 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||++.+..-.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~~ 28 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVEDS 28 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999988643
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.15 E-value=0.0011 Score=54.63 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 016339 162 TVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl 182 (391)
++|+|.+|||||||++.+..-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.0013 Score=55.08 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 37899999999999999998764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.13 E-value=0.0014 Score=57.56 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++++||+||||||++--|+...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999987777543
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.00099 Score=58.21 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++++++|-|+-||||||+++.|...+
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46889999999999999999999876
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0013 Score=55.13 Aligned_cols=22 Identities=45% Similarity=0.600 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|.+||||||||+.+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999998754
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0011 Score=55.49 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++++|++||||||||+.+..-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4799999999999999988754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0013 Score=55.18 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||++.+.+-.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999988653
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.10 E-value=0.0013 Score=54.92 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|.+|||||||++.+.+-
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999998754
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.0013 Score=55.38 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.0013 Score=56.20 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 016339 162 TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++|+|++||||||||+.+.+-.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHhhCC
Confidence 8999999999999999988643
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.07 E-value=0.0013 Score=61.66 Aligned_cols=24 Identities=46% Similarity=0.520 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.-+++|.||+|||||||++.|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457999999999999999998854
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0016 Score=56.78 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|-|+.||||||+++.|...+
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999987643
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0013 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|.+||||||||+.+.+-
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3799999999999999988754
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.05 E-value=0.0016 Score=57.22 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.+..++|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4678999999999999999988643
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.04 E-value=0.0018 Score=60.59 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=23.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+..+.|.|+.|||||||+|+|++..
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred hCCCEEEEeeccccchHHHHHHhhhc
Confidence 56779999999999999999999987
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.04 E-value=0.0014 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||++.+.+-.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999988643
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0015 Score=56.10 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|.||+||||||+-+.|+..+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.0014 Score=54.35 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||++.+.+-.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999887643
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0015 Score=54.33 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++|.+|||||||++.+..-.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999988543
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.97 E-value=0.0016 Score=55.73 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+||+||||||+-+.|+-.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999655
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.97 E-value=0.0017 Score=55.09 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0054 Score=50.51 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=55.7
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCC-----HHHHHHHHHHHHhcCCee
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVD-----EEVLNTWKSRLHTWGYEP 139 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~-----~~~~~~~~~~~~~~g~~~ 139 (391)
+......++|.+++|+++..| -+...+.+++... ...++|+++|.||+|+.. .++...| ..+++...
T Consensus 68 ~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~---a~~~~~~~ 143 (167)
T d1xtqa1 68 FPQTYSIDINGYILVYSVTSI-KSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL---AESWNAAF 143 (167)
T ss_dssp CCGGGTSSCCEEEEEEETTCH-HHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHH---HHHHTCEE
T ss_pred ccchhhhhhhhhhhhcccchh-hhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHH---HHHcCCEE
Confidence 334456799999999999765 2333444443222 245789999999999854 3333433 34567777
Q ss_pred EEEEcCCccchHHHhh
Q 016339 140 LFCSVESKLGLDSLLQ 155 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~ 155 (391)
+.+|..++.+++++-.
T Consensus 144 ~e~Sak~~~~v~~~f~ 159 (167)
T d1xtqa1 144 LESSAKENQTAVDVFR 159 (167)
T ss_dssp EECCTTCHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHH
Confidence 8889888888877643
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.93 E-value=0.0017 Score=56.09 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|-||+||||||+-+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999999654
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.93 E-value=0.0019 Score=56.87 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=22.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+.|.||+|+||||++++|+...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999865
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=95.92 E-value=0.0012 Score=57.27 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+|++|.-++|||||++.|.+..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998753
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.91 E-value=0.0021 Score=56.16 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|-|+-||||||++++|.-.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999999999999998655
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.91 E-value=0.0017 Score=54.09 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|.+|||||||+|.+..-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999998753
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.0017 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|++|||||||++.+.+-
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999987654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.88 E-value=0.0012 Score=55.21 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=8.6
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 016339 162 TVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl 182 (391)
++|+|.+||||||||+.|++-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 799999999999999988864
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.85 E-value=0.0025 Score=55.08 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
+|+++.|.||+|||||||...++-
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999987764
|
| >d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Translational initiation factor 1, IF1 species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0019 Score=46.83 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=41.1
Q ss_pred EeccCCCCCcccCCCCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEE
Q 016339 5 VQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (391)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (391)
++.-|...+. ..-.+|.+..|.++|+++|.+..+.+||.|.++..++...+|-|.
T Consensus 14 ~~~l~~~~f~-V~l~ng~~~~a~i~GkmRk~ri~i~~GD~V~Vel~pyd~~kgrIi 68 (71)
T d1hr0w_ 14 TEALPNATFR-VKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIV 68 (71)
T ss_dssp CCCCTTTBCC-CEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEEC
T ss_pred EEECCCCEEE-EEECCCCEEEEEecchhheeeEEecCCCEEEEEECccCCCcEEEE
Confidence 3344444443 222467778999999999888899999999999887777777663
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.0022 Score=55.75 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=26.6
Q ss_pred CccchHHHhhcc-cCC--EEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQRL-RDQ--TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge--~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+++.+.-.+ .|. .+.|.||+|+||||++++|+...
T Consensus 19 ~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 19 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHh
Confidence 334445554444 232 27899999999999999998753
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0021 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||++.+..-.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999987643
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0024 Score=54.03 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|.+|||||||++.+..-
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999998753
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.70 E-value=0.0023 Score=53.26 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++++|.+||||||||+.+.+-
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999998864
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0025 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||++.+..-.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999887643
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0024 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++|.+||||||||+.+.+..
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999888754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.63 E-value=0.0027 Score=55.58 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=21.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+++|+||+||||||++--|+-..
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999998888654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0064 Score=50.46 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=58.1
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHH--HhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCC
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA--ESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES 146 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a--~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~ 146 (391)
+.+.-..++|.+++|+++..+. +...+.+++... ...++|+++|.||+|+................++..+.+|+.+
T Consensus 68 ~~~~~~~~~~~~ilv~d~~~~~-Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~ 146 (170)
T d1i2ma_ 68 LRDGYYIQAQCAIIMFDVTSRV-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS 146 (170)
T ss_dssp CGGGGTTTCCEEEEEEETTSGG-GGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTT
T ss_pred ecchhcccccchhhcccccccc-ccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCC
Confidence 3344577999999999998762 222343333322 2457999999999999765422222233455677888899988
Q ss_pred ccchHHHhhcc
Q 016339 147 KLGLDSLLQRL 157 (391)
Q Consensus 147 ~~~L~~ls~~i 157 (391)
+.+++++-..+
T Consensus 147 ~~~v~e~f~~l 157 (170)
T d1i2ma_ 147 NYNFEKPFLWL 157 (170)
T ss_dssp TBTTTHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88877765443
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.57 E-value=0.003 Score=55.10 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=22.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|.++-|.|.||||||||.+.|.-.
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999998743
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.0029 Score=55.53 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+||+||||||.+--|+-..
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999998887543
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.53 E-value=0.0033 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|.+|||||||++.+..-
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987754
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.53 E-value=0.025 Score=47.86 Aligned_cols=82 Identities=22% Similarity=0.234 Sum_probs=54.4
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCC-EEEEEeCCCCCCHHHHHHH----HHHHHhcC---CeeEEEEc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEEVLNTW----KSRLHTWG---YEPLFCSV 144 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~-~~lvlnK~Dl~~~~~~~~~----~~~~~~~g---~~~v~~s~ 144 (391)
.++.+|.+++|.++..+.... +....+..++..+++ +++++||+|+.+..+.... ...+...+ +..+.+|.
T Consensus 98 ~~~~~d~~ilvvda~~g~~~~-~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA 176 (195)
T d1kk1a3 98 GASLMDGAILVIAANEPCPRP-QTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISA 176 (195)
T ss_dssp CGGGCSEEEEEEETTSCSSCH-HHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred ccccccccccccchhhhhhhh-hhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHHHHhccccCCCCeEEEEEC
Confidence 467899999999987754443 344455667777776 6777999999988643322 22333333 24577888
Q ss_pred CCccchHHHhh
Q 016339 145 ESKLGLDSLLQ 155 (391)
Q Consensus 145 ~~~~~L~~ls~ 155 (391)
-++.+++.+-.
T Consensus 177 ~~G~ni~~Ll~ 187 (195)
T d1kk1a3 177 LHGANIDVLVK 187 (195)
T ss_dssp TTTBSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 88887776643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.53 E-value=0.003 Score=55.51 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=21.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+++++||+||||||.+--|+-..
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999987777543
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.0035 Score=54.45 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=27.1
Q ss_pred CCccchHHHhhcc-cCC--EEEEEecCCCcHHHHHHHHhcCC
Q 016339 145 ESKLGLDSLLQRL-RDQ--TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge--~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++..+++.+.-.+ .+. .+.|.||+|+||||++++|+...
T Consensus 19 g~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 19 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHH
Confidence 4444555555555 222 37899999999999999987653
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.52 E-value=0.0031 Score=53.23 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 016339 161 TTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~ 180 (391)
.++|+|.+|||||||++.+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999984
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.52 E-value=0.0049 Score=50.69 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=55.2
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHH--HhCCCCEEEEEeCCCCCCH-----HHHHHHHHHHHhcCCeeEEEE
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA--ESTGIPLTLALNKVELVDE-----EVLNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a--~~~~~~~~lvlnK~Dl~~~-----~~~~~~~~~~~~~g~~~v~~s 143 (391)
+....++|.+++|+++..+. +...+.+++... ...++++++|.||+|+.+. ++...+ ...+++..+.+|
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~---~~~~~~~~~e~S 144 (164)
T d1z2aa1 69 KAYYRGAQACVLVFSTTDRE-SFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGL---AKRLKLRFYRTS 144 (164)
T ss_dssp HHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHH---HHHHTCEEEECB
T ss_pred hhhhccCceEEEEEeccchh-hhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHH---HHHcCCEEEEec
Confidence 34577999999999987652 233344444433 3468899999999999654 233333 345678888889
Q ss_pred cCCccchHHHh
Q 016339 144 VESKLGLDSLL 154 (391)
Q Consensus 144 ~~~~~~L~~ls 154 (391)
..++.+++.+-
T Consensus 145 ak~g~~v~e~f 155 (164)
T d1z2aa1 145 VKEDLNVSEVF 155 (164)
T ss_dssp TTTTBSSHHHH
T ss_pred cCCCcCHHHHH
Confidence 98888887763
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.0031 Score=58.56 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++||.|+|||||||+.+.|..++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHH
Confidence 89999999999999999988764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0087 Score=49.42 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=54.6
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
+.+.-..++|.+++|+++..| -+...+..++.... ...+|+++|.||+|+.+..+ ..........+|...+.+
T Consensus 64 ~~~~~~~~~d~~ilv~d~t~~-~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 142 (168)
T d2gjsa1 64 LPGHCMAMGDAYVIVYSVTDK-GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIET 142 (168)
T ss_dssp CHHHHHTSCSEEEEEEETTCH-HHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEEC
T ss_pred ecccchhhhhhhceecccccc-ccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEE
Confidence 344456799999999998765 23334444443332 24578999999999965421 111112334567788888
Q ss_pred EcCCccchHHHhh
Q 016339 143 SVESKLGLDSLLQ 155 (391)
Q Consensus 143 s~~~~~~L~~ls~ 155 (391)
|..++.+++++-.
T Consensus 143 Sak~~~~v~~~f~ 155 (168)
T d2gjsa1 143 SAALHHNVQALFE 155 (168)
T ss_dssp BTTTTBSHHHHHH
T ss_pred eCCCCcCHHHHHH
Confidence 9988888877643
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.45 E-value=0.0035 Score=57.31 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++|.-++|||||||+|+|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999975
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.39 E-value=0.0038 Score=56.71 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++|.-++|||||||+|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999975
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.37 E-value=0.0032 Score=55.31 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+++|+||+||||||++=-|+-..
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999988787543
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.37 E-value=0.0041 Score=54.43 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+.|.||+|+||||+++.|+..+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.36 E-value=0.0038 Score=57.03 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 016339 161 TTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~ 180 (391)
.++|+|+.|+|||||+.+|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999999985
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0096 Score=48.93 Aligned_cols=81 Identities=15% Similarity=0.277 Sum_probs=55.4
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCH----HHHHHHHHHHHhcCCeeEEEEc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDE----EVLNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~----~~~~~~~~~~~~~g~~~v~~s~ 144 (391)
...++|.+++|+++..+ .+...+.+++.... ..++|+++|.||+|+... ++...| ..++++..+.+|+
T Consensus 71 ~~~~~~~~iiv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~e~Sa 146 (166)
T d1ctqa_ 71 YMRTGEGFLCVFAINNT-KSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDL---ARSYGIPYIETSA 146 (166)
T ss_dssp HHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHH---HHHHTCCEEECCT
T ss_pred hhhcccccceeeccccc-ccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHH---HHHhCCeEEEEcC
Confidence 46799999999998765 22333444443332 256899999999999653 333333 3456788889999
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++++-..+
T Consensus 147 k~g~gi~e~f~~i 159 (166)
T d1ctqa_ 147 KTRQGVEDAFYTL 159 (166)
T ss_dssp TTCTTHHHHHHHH
T ss_pred CCCcCHHHHHHHH
Confidence 9999988875443
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.29 E-value=0.0032 Score=52.63 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|..|||||||++.+....
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~ 26 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIH 26 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47999999999999999987654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.26 E-value=0.0044 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+||+|.-++|||||+|.|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 37999999999999999999864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.26 E-value=0.0049 Score=53.69 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=25.1
Q ss_pred chHHHhhcc-----cCCEEEEEecCCCcHHHHHHHHh
Q 016339 149 GLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 149 ~L~~ls~~i-----~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
++..++..+ +|.++.|.||+|||||||.--++
T Consensus 21 Gi~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 21 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCHHHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 455555544 78999999999999999986554
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.25 E-value=0.0036 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.|.||+|||||+|.++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 58899999999999999999764
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.24 E-value=0.0054 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHh
Q 016339 158 RDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
+|+++.|.|+||+|||||.--++
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999975443
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.24 E-value=0.0055 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.|+++.|.|++|+|||||.--++-
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 789999999999999999877764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.22 E-value=0.0043 Score=53.46 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
++||.|++||||||+.+.|.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.014 Score=48.28 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=52.6
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCH-----HHHHHHHHHHHhcCCeeEEEE
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDE-----EVLNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~-----~~~~~~~~~~~~~g~~~v~~s 143 (391)
-..++|.+++||++..+ -+...+..+...... .++|+++|.||+||.+. ++.+. ....+++..+.+|
T Consensus 74 ~~~~~~~~ilvfd~t~~-~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~---~a~~~~~~~~e~S 149 (172)
T d2g3ya1 74 CMQVGDAYLIVYSITDR-ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA---CAVVFDCKFIETS 149 (172)
T ss_dssp CCCCCSEEEEEEETTCH-HHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH---HHHHHTCEEEECB
T ss_pred cccccceeeeeeccccc-chhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHH---HHHHcCCeEEEEe
Confidence 46799999999998764 233344444333332 46899999999998543 22222 2345677778889
Q ss_pred cCCccchHHHhh
Q 016339 144 VESKLGLDSLLQ 155 (391)
Q Consensus 144 ~~~~~~L~~ls~ 155 (391)
...+.+++.+-.
T Consensus 150 ak~g~~i~~~f~ 161 (172)
T d2g3ya1 150 AAVQHNVKELFE 161 (172)
T ss_dssp TTTTBSHHHHHH
T ss_pred CCCCcCHHHHHH
Confidence 888888887643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.20 E-value=0.018 Score=47.78 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=52.1
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHH--HHHHHHHH----HhcCC-eeEEEEcC
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV--LNTWKSRL----HTWGY-EPLFCSVE 145 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~----~~~g~-~~v~~s~~ 145 (391)
.+.++|.+++|+.+..+. . .....++..++..++++++|+||+|+....+ .......+ ...++ +.+.+|..
T Consensus 88 ~~~~~dvii~v~d~~~~~-~-~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~ 165 (186)
T d1mkya2 88 SIEKADVVVIVLDATQGI-T-RQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSAD 165 (186)
T ss_dssp HHHHCSEEEEEEETTTCC-C-HHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTT
T ss_pred HHhcCCEEEEeecccccc-h-hhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCC
Confidence 457999999998886542 2 2334445556788999999999999975542 11122222 22333 56778888
Q ss_pred CccchHHHhh
Q 016339 146 SKLGLDSLLQ 155 (391)
Q Consensus 146 ~~~~L~~ls~ 155 (391)
++.+++.+--
T Consensus 166 ~g~gv~~L~~ 175 (186)
T d1mkya2 166 KGWNIDRMID 175 (186)
T ss_dssp TTBSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 8887776543
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.18 E-value=0.005 Score=55.41 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-+.|.||+|||||+|+++|+...
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 458899999999999999999765
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.17 E-value=0.0064 Score=52.90 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=22.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|..+.|.|++|||||||...++-.
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 7899999999999999999776643
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.011 Score=49.00 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=55.0
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHH--HHHHHHHHHHhcCCeeEEEEcC
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~--~~~~~~~~~~~~g~~~v~~s~~ 145 (391)
...+.++|.+++|+++..| -+...+.+++..... .++|+++|.||+|+.+.. ............+...+.+|..
T Consensus 71 ~~~~~~~~~~i~v~d~~~~-~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 149 (175)
T d2f9la1 71 SAYYRGAVGALLVYDIAKH-LTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSAL 149 (175)
T ss_dssp HHHHTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhhccCeEEEEEECCCc-ccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecC
Confidence 3456789999999999765 223334444443332 457899999999997542 1222233445677888889998
Q ss_pred CccchHHHh
Q 016339 146 SKLGLDSLL 154 (391)
Q Consensus 146 ~~~~L~~ls 154 (391)
++.+++++-
T Consensus 150 ~g~~i~e~f 158 (175)
T d2f9la1 150 DSTNVEEAF 158 (175)
T ss_dssp TCTTHHHHH
T ss_pred CCcCHHHHH
Confidence 888887763
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.14 E-value=0.0062 Score=50.45 Aligned_cols=84 Identities=21% Similarity=0.297 Sum_probs=55.3
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
+....++|.+++|+++..+ .+...+..++... ...+.|+++|.||+|+.+..+ .+........++...+.+|.
T Consensus 70 ~~~~~~~~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 148 (168)
T d1u8za_ 70 DNYFRSGEGFLCVFSITEM-ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSA 148 (168)
T ss_dssp HHHHHHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred hhcccccceeEEEeeccch-hhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcC
Confidence 3456799999999998764 2334444444332 235789999999999853311 12223344567888888899
Q ss_pred CCccchHHHhh
Q 016339 145 ESKLGLDSLLQ 155 (391)
Q Consensus 145 ~~~~~L~~ls~ 155 (391)
.++.+++++-.
T Consensus 149 k~g~gv~e~f~ 159 (168)
T d1u8za_ 149 KTRANVDKVFF 159 (168)
T ss_dssp TTCTTHHHHHH
T ss_pred CCCcCHHHHHH
Confidence 88888887643
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.01 Score=48.71 Aligned_cols=83 Identities=20% Similarity=0.230 Sum_probs=53.2
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcC
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~ 145 (391)
.-..++|.+++|+++..+ .+...+..+..... ..++|++||.||+|+.+... .+........++...+.+|..
T Consensus 70 ~~~~~a~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak 148 (167)
T d1kaoa_ 70 LYIKNGQGFILVYSLVNQ-QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAK 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTT
T ss_pred HHhhcccceeeeeeecch-hhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCC
Confidence 345789999999999765 33333444433322 25678999999999854321 111122334567788889998
Q ss_pred CccchHHHhh
Q 016339 146 SKLGLDSLLQ 155 (391)
Q Consensus 146 ~~~~L~~ls~ 155 (391)
++.+++.+-.
T Consensus 149 ~g~~i~e~f~ 158 (167)
T d1kaoa_ 149 SKTMVDELFA 158 (167)
T ss_dssp CHHHHHHHHH
T ss_pred CCcCHHHHHH
Confidence 8888877543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.017 Score=47.63 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=54.8
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHH----HHHhCCCCEEEEEeCCCCCCHH--HHHHHHHHHHhcCCeeEEEEcC
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLV----EAESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~----~a~~~~~~~~lvlnK~Dl~~~~--~~~~~~~~~~~~g~~~v~~s~~ 145 (391)
....++|.+++|+++..|. +...+.+++. .......|+++|.||+|+.... ..+........++...+.+|..
T Consensus 72 ~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 150 (171)
T d2erya1 72 QYMRTGEGFLLVFSVTDRG-SFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAK 150 (171)
T ss_dssp HHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTT
T ss_pred ccccccceEEEeecccccc-chhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCC
Confidence 3467899999999988752 2333333332 2234567889999999996431 1112223445678888888998
Q ss_pred CccchHHHhhc
Q 016339 146 SKLGLDSLLQR 156 (391)
Q Consensus 146 ~~~~L~~ls~~ 156 (391)
++.+++.+-..
T Consensus 151 ~~~~i~e~f~~ 161 (171)
T d2erya1 151 IRMNVDQAFHE 161 (171)
T ss_dssp TTBSHHHHHHH
T ss_pred CCcCHHHHHHH
Confidence 88888876543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.012 Score=48.83 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=55.8
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
.....++|.+++|+++..+ .+...+.+++... ...+.|+++|.||+|+..... .+.......+++...+.+|.
T Consensus 72 ~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 150 (173)
T d2fn4a1 72 EQYMRAGHGFLLVFAINDR-QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA 150 (173)
T ss_dssp HHHHHHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred chhhccceeeeeecccccc-cccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeC
Confidence 3456799999999999765 3333444443322 235779999999999854311 11122334567888888899
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++.+-..
T Consensus 151 k~g~gv~e~f~~ 162 (173)
T d2fn4a1 151 KLRLNVDEAFEQ 162 (173)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCcCHHHHHHH
Confidence 888888876543
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.01 E-value=0.039 Score=47.98 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=38.2
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHH
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~ 123 (391)
.++.+|.+++|+++... +.+. -.+.+..+...++|+++|+||+|+++..
T Consensus 90 ~~~~~D~~ilVvda~~g-~~~~-~~~~~~~~~~~~~p~iivlNK~D~~~~~ 138 (227)
T d1g7sa4 90 GGALADLAILIVDINEG-FKPQ-TQEALNILRMYRTPFVVAANKIDRIHGW 138 (227)
T ss_dssp SSBSCSEEEEEEETTTC-CCHH-HHHHHHHHHHTTCCEEEEEECGGGSTTC
T ss_pred cccccceEEEEEecccC-cccc-hhHHHHHhhcCCCeEEEEEECccCCCch
Confidence 56789999999998763 4443 3456666788999999999999997643
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.99 E-value=0.0051 Score=55.03 Aligned_cols=24 Identities=38% Similarity=0.724 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-+.|.||+|||||+|+++|+...
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEecCCCCChhHHHHHHHHHc
Confidence 348999999999999999999866
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.0068 Score=52.58 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=26.3
Q ss_pred chHHHhhcc-----cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 149 GLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 149 ~L~~ls~~i-----~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
++..++..+ +|.++.|.||||||||||.-.++.
T Consensus 22 Gi~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 22 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455555555 789999999999999999877763
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.98 E-value=0.013 Score=50.66 Aligned_cols=50 Identities=26% Similarity=0.467 Sum_probs=38.1
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCC-EEEEEeCCCCCCHH
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEE 123 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~-~~lvlnK~Dl~~~~ 123 (391)
..++.+|.+++|.++... ... +-.+.+..|...|++ +++++||.|+++.+
T Consensus 86 ~~~~~aD~avlVvda~~G-v~~-qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~ 136 (204)
T d2c78a3 86 TGAAQMDGAILVVSAADG-PMP-QTREHILLARQVGVPYIVVFMNKVDMVDDP 136 (204)
T ss_dssp HHHTTCSSEEEEEETTTC-CCH-HHHHHHHHHHHTTCCCEEEEEECGGGCCCH
T ss_pred HHHHHCCEEEEEEECCCC-CcH-HHHHHHHHHHHcCCCeEEEEEEecccCCCH
Confidence 356789999999998753 443 445677788999987 56679999998754
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.97 E-value=0.0058 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998643
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.97 E-value=0.0037 Score=53.33 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=22.0
Q ss_pred cccCCEEEEEecCCCcHHHHHHHHhc
Q 016339 156 RLRDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 156 ~i~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+.|.-+.|.|+||+|||||.-.|..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44788899999999999999877664
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.95 E-value=0.0033 Score=55.48 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 016339 162 TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.|.||+|+||||+++.++..+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 4556999999999999998754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.94 E-value=0.0093 Score=53.18 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=27.2
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
-..|+++..=+ +|+.+.|.|+||+|||||+..|+-
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34566654323 899999999999999999877763
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.94 E-value=0.0058 Score=53.32 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+.|+|.+|||||||++.+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999998853
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.0062 Score=56.38 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=29.4
Q ss_pred cCCccchHHHhhcc------------cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 144 VESKLGLDSLLQRL------------RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 144 ~~~~~~L~~ls~~i------------~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+..|++.|...+ +...+.++||+|||||.|.+.|+...
T Consensus 25 iGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 25 FGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhc
Confidence 35666666665444 12368899999999999999998654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.93 E-value=0.012 Score=47.93 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=47.0
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCH-----HHHHHHHHHHHhcCCeeEEEE
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDE-----EVLNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~-----~~~~~~~~~~~~~g~~~v~~s 143 (391)
...++|.+++|+++..| -+...+..++.... ..++|+++|.||+|+.++ ++.+. ...+++++.+.+|
T Consensus 72 ~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~---~~~~~~~~~~e~S 147 (165)
T d1z06a1 72 YYRNVHAVVFVYDMTNM-ASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK---FADTHSMPLFETS 147 (165)
T ss_dssp HHTTCCEEEEEEETTCH-HHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH---HHHHTTCCEEECC
T ss_pred eecCCCceEEEEEeehh-hhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHH---HHHHCCCEEEEEe
Confidence 45799999999999775 22333333333322 246799999999998543 33333 3456788888888
Q ss_pred cCCcc
Q 016339 144 VESKL 148 (391)
Q Consensus 144 ~~~~~ 148 (391)
..++.
T Consensus 148 Akt~~ 152 (165)
T d1z06a1 148 AKNPN 152 (165)
T ss_dssp SSSGG
T ss_pred cccCC
Confidence 75543
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.92 E-value=0.0099 Score=49.05 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=51.9
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHH---HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcCC
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a---~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~~ 146 (391)
.-..++|.+++|+++..|. ....+.+++... .....++++|.||+|+.+... .+........+|++.+.+|..+
T Consensus 73 ~~~~~ad~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 151 (169)
T d3raba_ 73 AYYRGAMGFILMYDITNEE-SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKD 151 (169)
T ss_dssp TTTTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHHhcCCEEEEEEECccch-hhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCC
Confidence 3478999999999987652 122223333222 334566788889999854321 1122223456788889999988
Q ss_pred ccchHHHhh
Q 016339 147 KLGLDSLLQ 155 (391)
Q Consensus 147 ~~~L~~ls~ 155 (391)
+.+++.+-.
T Consensus 152 g~gv~e~f~ 160 (169)
T d3raba_ 152 NINVKQTFE 160 (169)
T ss_dssp TBSHHHHHH
T ss_pred CcCHHHHHH
Confidence 888877643
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.90 E-value=0.0031 Score=57.93 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=17.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++||.|+|||||||+.+.|....
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 78999999999999999887654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.89 E-value=0.0064 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=21.9
Q ss_pred cccCCEEEEEecCCCcHHHHHHHHhc
Q 016339 156 RLRDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 156 ~i~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+.|.-+.|.|+||+|||||.-.|..
T Consensus 12 ~~~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 12 EVFGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34688899999999999999877664
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.88 E-value=0.0053 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.+.|.||+|+||||++++++..
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999864
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.0063 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
++||.|+.||||||..+.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999998743
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.83 E-value=0.0055 Score=54.95 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-+.|.||+|||||+|+++++...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceeEEecCCCCCchHHHHHHHHHh
Confidence 348899999999999999999865
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.0069 Score=55.18 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+||-++|||||||.|.|..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999999865
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.024 Score=46.52 Aligned_cols=83 Identities=11% Similarity=0.179 Sum_probs=51.5
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHHH-------hCCCCEEEEEeCCCCCCHHH---HHHHHHHHHhcC-CeeE
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE-------STGIPLTLALNKVELVDEEV---LNTWKSRLHTWG-YEPL 140 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~-------~~~~~~~lvlnK~Dl~~~~~---~~~~~~~~~~~g-~~~v 140 (391)
....++|.+++++++..+. +...+..++.... ..++|+++|.||+|+.+... .+........++ +..+
T Consensus 71 ~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 149 (175)
T d1ky3a_ 71 AFYRGADCCVLVYDVTNAS-SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLF 149 (175)
T ss_dssp CCSTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEE
T ss_pred HHhhccceEEEEeeccccc-ccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEE
Confidence 3456899999999987652 2333334333222 13679999999999965421 111122233454 5667
Q ss_pred EEEcCCccchHHHhh
Q 016339 141 FCSVESKLGLDSLLQ 155 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~ 155 (391)
.+|+.++.+++.+-.
T Consensus 150 e~SA~~g~gv~e~f~ 164 (175)
T d1ky3a_ 150 LTSAKNAINVDTAFE 164 (175)
T ss_dssp EEBTTTTBSHHHHHH
T ss_pred EEeCCCCcCHHHHHH
Confidence 889988888887643
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.023 Score=46.19 Aligned_cols=86 Identities=10% Similarity=0.191 Sum_probs=57.8
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHH---HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcC
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a---~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~ 145 (391)
+....++|.+++|+++..+ .+...+.+++... ...+.++++|.||+|+.+... .+........+++..+.+|..
T Consensus 67 ~~~~~~~~~~ilv~d~~~~-~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk 145 (164)
T d1yzqa1 67 PSYIRDSAAAVVVYDITNV-NSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 145 (164)
T ss_dssp HHHHTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhhccceEEEeeccccc-cchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCC
Confidence 3457899999999999765 2233344444332 335678899999999964321 223334456678888889999
Q ss_pred CccchHHHhhcc
Q 016339 146 SKLGLDSLLQRL 157 (391)
Q Consensus 146 ~~~~L~~ls~~i 157 (391)
++.+++++-..|
T Consensus 146 ~g~~v~e~f~~i 157 (164)
T d1yzqa1 146 AGYNVKQLFRRV 157 (164)
T ss_dssp TCTTHHHHHHHH
T ss_pred CCcCHHHHHHHH
Confidence 888888776554
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.71 E-value=0.015 Score=47.95 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=51.6
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHH----HHHhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLV----EAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~----~a~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
+....++|.+++|+++..+. +...+..++. .....++|+++|.||+|+....+ .+........+++..+.+|.
T Consensus 70 ~~~~~~~~~~llv~d~~d~~-Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sa 148 (169)
T d1x1ra1 70 EQYMRTGDGFLIVYSVTDKA-SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA 148 (169)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBC
T ss_pred hhhhhhccEEEEecccccch-hhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcC
Confidence 34567999999999998652 2222333322 22345789999999999865421 12222334566788888898
Q ss_pred CCc-cchHHHh
Q 016339 145 ESK-LGLDSLL 154 (391)
Q Consensus 145 ~~~-~~L~~ls 154 (391)
.++ .+++.+-
T Consensus 149 k~~~~nV~~~F 159 (169)
T d1x1ra1 149 KDPPLNVDKTF 159 (169)
T ss_dssp SSSCBSHHHHH
T ss_pred CCCCcCHHHHH
Confidence 544 3676653
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.66 E-value=0.0083 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||++.+....
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~ 26 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIH 26 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987543
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.65 E-value=0.0067 Score=54.67 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
...+.|.||+|+|||+|+++|++..
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 3458899999999999999999976
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.55 E-value=0.026 Score=46.84 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=43.8
Q ss_pred ccccceeEEEEEecCCC-CCHHHH---HHHHHHHH---hCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCC
Q 016339 74 VANVDHLLLLFSMDQPK-LEPFAL---TRFLVEAE---STGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES 146 (391)
Q Consensus 74 ~anvD~~liv~s~~~p~-~~~~~l---~r~L~~a~---~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~ 146 (391)
+.++|.++.+....... ...... ......+. ..++|+++|+||+|+.+..+...........+++.+.+|..+
T Consensus 77 ~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~ 156 (185)
T d1lnza2 77 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVT 156 (185)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred HHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhccCCcEEEEECCC
Confidence 45677766666554332 222211 11221111 236789999999999887543222111112356667777777
Q ss_pred ccchHHHh
Q 016339 147 KLGLDSLL 154 (391)
Q Consensus 147 ~~~L~~ls 154 (391)
+.+++.+-
T Consensus 157 g~Gi~~L~ 164 (185)
T d1lnza2 157 REGLRELL 164 (185)
T ss_dssp SSTTHHHH
T ss_pred CCCHHHHH
Confidence 76666653
|
| >d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Translation initiation factor-1a, eIF1a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.46 E-value=0.021 Score=46.80 Aligned_cols=46 Identities=28% Similarity=0.476 Sum_probs=39.0
Q ss_pred CCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccc
Q 016339 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS 66 (391)
Q Consensus 20 ~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~ 66 (391)
+|...+|.+||+|++ +..+..||||+|+.-+|....+-|..+|.+.
T Consensus 52 dg~~rl~~irgk~r~-r~~i~~Gd~VlV~~rd~e~~K~DIl~~Y~~~ 97 (143)
T d1d7qa_ 52 DGVKRLCHIRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNAD 97 (143)
T ss_dssp TTEEEEEECCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECTT
T ss_pred CCCEEEEEecCccee-EEEEeCCCEEEEeccCCcCcEEEEEEECCHH
Confidence 578899999999985 5678999999999999988788888777754
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.0079 Score=53.40 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHh
Q 016339 158 RDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
.+.++.|-|||.+||||+|+.++
T Consensus 40 ~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 40 QRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEeccCchhhHHHHHHHH
Confidence 45789999999999999999875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.34 E-value=0.0097 Score=54.45 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
++||-|++|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.31 E-value=0.0096 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHh
Q 016339 158 RDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
.++++.|-|||.+||||+|+.+.
T Consensus 34 ~~~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 34 AHELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp SSCEEEEESCSSSSHHHHHHHHH
T ss_pred CCcEEEEECCCccccchhhhhhH
Confidence 45689999999999999999876
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.31 E-value=0.015 Score=47.72 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=51.2
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHH---HHH--HhCCCCEEEEEeCCCCCCH-----HHHHHHHHHHHhcCCeeEEE
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFL---VEA--ESTGIPLTLALNKVELVDE-----EVLNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L---~~a--~~~~~~~~lvlnK~Dl~~~-----~~~~~~~~~~~~~g~~~v~~ 142 (391)
...++|.+++|+++..|. +...+..++ ... ...++|++||.||+|+.+. ++.+.+ ...++...+.+
T Consensus 70 ~~~~a~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~---~~~~~~~~~e~ 145 (171)
T d2erxa1 70 SISKGHAFILVYSITSRQ-SLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL---ARTWKCAFMET 145 (171)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHH---HHHHTCEEEEC
T ss_pred cccceeEEEEEeeccccc-chhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHH---HHHcCCeEEEE
Confidence 467899999999987652 122222222 111 2356899999999999543 333333 34567777888
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 146 Sak~~~~v~e~f~~l 160 (171)
T d2erxa1 146 SAKLNHNVKELFQEL 160 (171)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred cCCCCcCHHHHHHHH
Confidence 988888888764433
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.20 E-value=0.012 Score=49.69 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=21.5
Q ss_pred cccCCEEEEEecCCCcHHHHHHHHhc
Q 016339 156 RLRDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 156 ~i~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+.|.-+.|.|+||+|||||.-.|..
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44788899999999999999866553
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.012 Score=48.64 Aligned_cols=86 Identities=17% Similarity=0.098 Sum_probs=56.5
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHH---hCCCCEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~---~~~~~~~lvlnK~Dl~~~~~~--~~~~~~~~~~g~~~v~~s 143 (391)
+.+....++|.+++|+++..+ -....+..++.... ..++|+++|.||+|+....+. .........+++..+.+|
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~S 148 (174)
T d2bmea1 70 VTRSYYRGAAGALLVYDITSR-ETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 148 (174)
T ss_dssp HHHTTSTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hHHHHhhhCCEEEEEEecccc-hhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEee
Confidence 344567899999999998765 22233334443332 346899999999998543211 122233456788888899
Q ss_pred cCCccchHHHhh
Q 016339 144 VESKLGLDSLLQ 155 (391)
Q Consensus 144 ~~~~~~L~~ls~ 155 (391)
+.++.+++.+-.
T Consensus 149 ak~~~gi~e~f~ 160 (174)
T d2bmea1 149 ALTGENVEEAFV 160 (174)
T ss_dssp TTTCTTHHHHHH
T ss_pred CCCCcCHHHHHH
Confidence 988888887643
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.027 Score=46.40 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=54.5
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHHH---hCCCCEEEEEeCCCCCCH-----HHHHHHHHHHHhcCCeeEEEE
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDE-----EVLNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~---~~~~~~~lvlnK~Dl~~~-----~~~~~~~~~~~~~g~~~v~~s 143 (391)
-...++|.+++|+++..| -+...+.+++..+. ..++|++||.||+|+... ++...+ ...++...+.+|
T Consensus 71 ~~~~~~d~~ilv~d~~~~-~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---a~~~~~~~~e~S 146 (173)
T d2a5ja1 71 SYYRGAAGALLVYDITRR-ETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAF---AREHGLIFMETS 146 (173)
T ss_dssp HHHTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH---HHHHTCEEEEEC
T ss_pred HHhhccCEEEEEEeecCh-HHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHH---HHHcCCEEEEec
Confidence 346789999999999876 22333444443332 356788999999997432 233333 345678888999
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 147 a~tg~~V~e~f~~i 160 (173)
T d2a5ja1 147 AKTACNVEEAFINT 160 (173)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99998888764433
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=94.14 E-value=0.018 Score=50.47 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++++|.-++|||||++.|+..
T Consensus 11 ~i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 11 RFLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3799999999999999999643
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.07 E-value=0.014 Score=51.67 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.9
Q ss_pred ccCCEEEEEecCCCcHHHHHHHHhc
Q 016339 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 157 i~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
++|.++.|.|++|+|||||+-.|+-
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3799999999999999999877654
|
| >d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Archaeal initiation factor-1a, aIF1a species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.04 E-value=0.013 Score=45.22 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=35.9
Q ss_pred CCCcEEEEEecccccccCCCceeCcEEEEceecccC-ceeEEEEeec
Q 016339 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD-RRGMIENVFQ 64 (391)
Q Consensus 19 ~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~-~~~~i~~v~~ 64 (391)
.+|.+.+|.+||+|+| ...+.+||+|+++.-+|.. ..+-|..++.
T Consensus 40 ~dg~~rl~~irGK~Rk-~~~I~~Gd~VlV~~r~~~~~~K~dIl~~Y~ 85 (102)
T d1jt8a_ 40 LDGKTRLGRIPGRLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWRYT 85 (102)
T ss_dssp ETTEEEEEECCHHHHH-HHCCCSCEEEEECCBCCTTSEEEEEEEESS
T ss_pred CCCCEEEEEEcCCcce-eeEecCCCEEEEEeeecCCCcEEEEEEECC
Confidence 3578899999999986 4678999999999988874 4676665554
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.97 E-value=0.054 Score=44.73 Aligned_cols=84 Identities=12% Similarity=0.014 Sum_probs=51.4
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCeeE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPL 140 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~-----~~~g~~~v 140 (391)
.+.-..++|.+++|+++..+ .......+++... ...+.|+++|.||+|+.+..........+ ...++..+
T Consensus 78 ~~~~~~~~~~ii~v~d~~d~-~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 156 (182)
T d1moza_ 78 WRCYYADTAAVIFVVDSTDK-DRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIV 156 (182)
T ss_dssp GGGTTTTEEEEEEEEETTCT-TTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEE
T ss_pred HHhhhccceeEEEEeeeccc-ccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEE
Confidence 34456799999999998765 3333444443322 23568999999999996532112211221 22234567
Q ss_pred EEEcCCccchHHHh
Q 016339 141 FCSVESKLGLDSLL 154 (391)
Q Consensus 141 ~~s~~~~~~L~~ls 154 (391)
.+|+.++.+++++-
T Consensus 157 e~SA~~g~gv~e~~ 170 (182)
T d1moza_ 157 ASSAIKGEGITEGL 170 (182)
T ss_dssp EEBGGGTBTHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 88988888887653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=0.016 Score=52.99 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=26.4
Q ss_pred chHHHhhcccCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 149 ~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
++|-+.--.+|+..+|+|++|+|||||+..|+.-
T Consensus 33 ~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 33 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp HHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred eeeecccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 3443333339999999999999999999888753
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.014 Score=48.03 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=53.1
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHH---HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcCC
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a---~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~~ 146 (391)
.-..++|.+++|+++..+ -+...+.+++... ...+.++++|.||+|+.+..+ .+........+|+..+.+|..+
T Consensus 73 ~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAkt 151 (171)
T d2ew1a1 73 SYYRSANALILTYDITCE-ESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKE 151 (171)
T ss_dssp GGSTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred HHHhccceEEEeeecccc-hhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCC
Confidence 346799999999998765 2233333333332 234578889999999864321 1122223345677888899999
Q ss_pred ccchHHHhh
Q 016339 147 KLGLDSLLQ 155 (391)
Q Consensus 147 ~~~L~~ls~ 155 (391)
+.+++++-.
T Consensus 152 g~gV~e~f~ 160 (171)
T d2ew1a1 152 SDNVEKLFL 160 (171)
T ss_dssp CTTHHHHHH
T ss_pred CCCHHHHHH
Confidence 988888743
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.93 E-value=0.01 Score=51.65 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 016339 162 TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.|.||+|+|||-|+++++...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999998654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.88 E-value=0.059 Score=43.23 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=53.7
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccchHH
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDS 152 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L~~ 152 (391)
.+.++|.+++|+....|...... .+. ......++++++||.|+.+....+.....+ ..+.+.+.+|..++.+++.
T Consensus 77 ~~~~ad~ii~v~d~~~~~~~~~~--~~~--~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~-~~~~~~~~vSA~~g~gi~~ 151 (160)
T d1xzpa2 77 EIEKADIVLFVLDASSPLDEEDR--KIL--ERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEK 151 (160)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHH--HHH--HHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHH
T ss_pred HHHhCCEEEEEEeCCCCcchhhh--hhh--hhcccccceeeeeeccccchhhhHHHHHHh-CCCCcEEEEECCCCCCHHH
Confidence 46799999999998876443221 111 123567899999999998875444333333 3456788899988888887
Q ss_pred Hhhc
Q 016339 153 LLQR 156 (391)
Q Consensus 153 ls~~ 156 (391)
+--.
T Consensus 152 L~~~ 155 (160)
T d1xzpa2 152 LEES 155 (160)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.03 Score=45.71 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=54.4
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHH---HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcC
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a---~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~ 145 (391)
.....++|.+++|+++..+ -+...+..++... .....++++|.||+|+.+... .+........++...+.+|..
T Consensus 71 ~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak 149 (166)
T d1z0fa1 71 RSYYRGAAGALMVYDITRR-STYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK 149 (166)
T ss_dssp HHHHHTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhcCCcEEEEEeccCch-HHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCC
Confidence 3456799999999999764 2222333333333 334567888889999954321 122233445678888899999
Q ss_pred CccchHHHhh
Q 016339 146 SKLGLDSLLQ 155 (391)
Q Consensus 146 ~~~~L~~ls~ 155 (391)
++.+++.+-.
T Consensus 150 tg~~v~e~f~ 159 (166)
T d1z0fa1 150 TGENVEDAFL 159 (166)
T ss_dssp TCTTHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9888887643
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.72 E-value=0.018 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.-++|||||++.|+|..
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhh
Confidence 58999999999999999999865
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.037 Score=45.17 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=54.5
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHH---HHHhCCCCEEEEEeCCCCCC-----HHHHHHHHHHHHhcCCeeEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLV---EAESTGIPLTLALNKVELVD-----EEVLNTWKSRLHTWGYEPLF 141 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~---~a~~~~~~~~lvlnK~Dl~~-----~~~~~~~~~~~~~~g~~~v~ 141 (391)
.+....++|.+++|+++..|. +...+..++. .......++++|.||+|+.. .++... ....+++..+.
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~-Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~---~a~~~~~~~~e 144 (167)
T d1z08a1 69 GPIYYRDSNGAILVYDITDED-SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAES---YAESVGAKHYH 144 (167)
T ss_dssp -CCSSTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHH---HHHHTTCEEEE
T ss_pred chhhccCCceeEEEEeCCchh-HHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHH---HHHHcCCeEEE
Confidence 344577999999999987652 2333333332 22345667888899999854 333443 34467888889
Q ss_pred EEcCCccchHHHhh
Q 016339 142 CSVESKLGLDSLLQ 155 (391)
Q Consensus 142 ~s~~~~~~L~~ls~ 155 (391)
+|..++.+++++-.
T Consensus 145 ~Sak~~~~v~e~F~ 158 (167)
T d1z08a1 145 TSAKQNKGIEELFL 158 (167)
T ss_dssp EBTTTTBSHHHHHH
T ss_pred EecCCCcCHHHHHH
Confidence 99988888887643
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.71 E-value=0.02 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.661 Sum_probs=21.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
....||||+|+|||+++..|+...
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEecCCcccHHHHHHHHHHH
Confidence 468999999999999999998754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.70 E-value=0.11 Score=42.56 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=31.6
Q ss_pred ccccccceeEEEEEecCC----------CCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHH
Q 016339 72 PPVANVDHLLLLFSMDQP----------KLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p----------~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~ 123 (391)
....++|.+++|+....+ ...... ..++..+...++|+++|+||+|++++.
T Consensus 77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d-~~~~~~l~~~~~p~iiv~NK~D~~~~~ 137 (184)
T d2cxxa1 77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPID-VEFYQFLRELDIPTIVAVNKLDKIKNV 137 (184)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHH-HHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred hcccccchheeeeeccccchhhhhhhhccccHHH-HHHHHHHHHcCCCEEEEEeeeehhhhH
Confidence 345689988887765321 111111 112333466799999999999988654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.64 E-value=0.019 Score=51.86 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
...+.||||+|+|||+++..|+...
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHHHH
Confidence 3568999999999999999998654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.63 E-value=0.016 Score=54.65 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=23.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++..+.|.||+|+||||+.++|++..
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999876
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.61 E-value=0.0071 Score=55.88 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|.-+.|+||+|+|||||++.|.+++
T Consensus 27 ~~h~vLl~G~pG~GKT~lar~~~~iL 52 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAVRALAALL 52 (333)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCCeEEEECCCCccHHHHHHHHHHhC
Confidence 34568999999999999999999876
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.017 Score=50.25 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.8
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++++|=|+=||||||+++.|.-..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 689999999999999999998755
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.57 E-value=0.0049 Score=50.15 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=49.1
Q ss_pred cccccceeEEEEEecCCC-CCHHHH-HHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccch
Q 016339 73 PVANVDHLLLLFSMDQPK-LEPFAL-TRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~-~~~~~l-~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L 150 (391)
...++|.+++++....+. ++...+ ..++. -...++++++|+||+||.++.... .+..+.+.+.+|..++.++
T Consensus 77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~iilv~NK~Dl~~~~~~~-----~~~~~~~~~~iSAk~~~gi 150 (161)
T d2gj8a1 77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIA-RLPAKLPITVVRNKADITGETLGM-----SEVNGHALIRLSARTGEGV 150 (161)
T ss_dssp HHHTCSEEEEEEETTTCCCCSHHHHCHHHHH-HSCTTCCEEEEEECHHHHCCCCEE-----EEETTEEEEECCTTTCTTH
T ss_pred HHHhccccceeeccccccchhhhhhhhhhhh-hcccccceeeccchhhhhhhHHHH-----HHhCCCcEEEEECCCCCCH
Confidence 457899988888776653 344443 33332 233578999999999986643110 0123457788888888877
Q ss_pred HHHhhc
Q 016339 151 DSLLQR 156 (391)
Q Consensus 151 ~~ls~~ 156 (391)
+.+--.
T Consensus 151 ~~L~~~ 156 (161)
T d2gj8a1 151 DVLRNH 156 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776433
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.47 E-value=0.026 Score=50.01 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=36.2
Q ss_pred cccccceeEEEEEecCCCC-----CHHHHHHHHHHHHhCCCCE-EEEEeCCCCCCH
Q 016339 73 PVANVDHLLLLFSMDQPKL-----EPFALTRFLVEAESTGIPL-TLALNKVELVDE 122 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~-----~~~~l~r~L~~a~~~~~~~-~lvlnK~Dl~~~ 122 (391)
.++-+|.+++|.++....+ ...+-...+..|+..|++. ++++||+|+++.
T Consensus 104 g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 104 GTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW 159 (239)
T ss_dssp SSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTT
T ss_pred HHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCC
Confidence 4678999999988764221 1235566777789999985 568999999863
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.42 E-value=0.05 Score=44.50 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=50.3
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHH----HHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCeeEE
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFL----VEAESTGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPLF 141 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L----~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~-----~~~g~~~v~ 141 (391)
+....++|.+++|+.+..+ .....+..++ ......++|+++|.||+|+.+..........+ ...++..+.
T Consensus 78 ~~~~~~~~~ii~v~d~~d~-~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (176)
T d1fzqa_ 78 RSYFENTDILIYVIDSADR-KRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 156 (176)
T ss_dssp HHHHTTCSEEEEEEETTCG-GGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHhhccceeEEeeccccc-cchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEE
Confidence 3456799999999988654 2333332222 22234578999999999997654333222222 112334566
Q ss_pred EEcCCccchHHHh
Q 016339 142 CSVESKLGLDSLL 154 (391)
Q Consensus 142 ~s~~~~~~L~~ls 154 (391)
+|..++.+++++-
T Consensus 157 ~SA~tg~gv~e~~ 169 (176)
T d1fzqa_ 157 CSALTGEGVQDGM 169 (176)
T ss_dssp CCTTTCTTHHHHH
T ss_pred EeCCCCCCHHHHH
Confidence 7888888887754
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.30 E-value=0.019 Score=54.80 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+...+.|.||.||||||++.+++...
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhh
Confidence 46689999999999999999988754
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.091 Score=42.69 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=52.6
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHh-cCCeeEEEEc
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHT-WGYEPLFCSV 144 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~-~g~~~v~~s~ 144 (391)
.-..++|.+++|+++..| -+...+..++.... ..++|+++|.||+|+..... .+.......+ .++..+.+|.
T Consensus 70 ~~~~~~~~~ilv~d~~~~-~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (167)
T d1c1ya_ 70 LYMKNGQGFALVYSITAQ-STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred ccccccceeEEeeeccch-hhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcC
Confidence 346799999999999865 33334444443322 24678999999999964421 1111122223 3567778899
Q ss_pred CCccchHHHhh
Q 016339 145 ESKLGLDSLLQ 155 (391)
Q Consensus 145 ~~~~~L~~ls~ 155 (391)
.++.+++.+-.
T Consensus 149 k~g~gv~e~F~ 159 (167)
T d1c1ya_ 149 KSKINVNEIFY 159 (167)
T ss_dssp TTTBSHHHHHH
T ss_pred CCCcCHHHHHH
Confidence 88888887643
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.03 Score=46.60 Aligned_cols=80 Identities=13% Similarity=0.179 Sum_probs=52.8
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCH-----HHHHHHHHHHHhcCCeeEEEE
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDE-----EVLNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~-----~~~~~~~~~~~~~g~~~v~~s 143 (391)
...++|.+++|+++..+ .....+..++... .....++++|.||+|+... ++... ....+|+..+.+|
T Consensus 84 ~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~---~~~~~~~~~~e~S 159 (186)
T d2f7sa1 84 FFRDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE---LADKYGIPYFETS 159 (186)
T ss_dssp HHTTCCEEEEEEETTCH-HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH---HHHHTTCCEEEEB
T ss_pred HHhcCCEEEEEEecccc-ccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHH---HHHHcCCEEEEEe
Confidence 46799999999998654 2333444444321 2234567899999999543 33333 3456788889999
Q ss_pred cCCccchHHHhhc
Q 016339 144 VESKLGLDSLLQR 156 (391)
Q Consensus 144 ~~~~~~L~~ls~~ 156 (391)
..++.+++.+-..
T Consensus 160 ak~~~~i~e~f~~ 172 (186)
T d2f7sa1 160 AATGQNVEKAVET 172 (186)
T ss_dssp TTTTBTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 9888887766443
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=93.24 E-value=0.16 Score=43.99 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=36.9
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCC-EEEEEeCCCCCCH
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDE 122 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~-~~lvlnK~Dl~~~ 122 (391)
.++-+|.+++|.++... +.+ +-...+..+...|++ +++++||.|+++.
T Consensus 109 g~~~aD~ailVvda~~G-~~~-Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~ 157 (222)
T d1zunb3 109 GASTCDLAIILVDARYG-VQT-QTRRHSYIASLLGIKHIVVAINKMDLNGF 157 (222)
T ss_dssp HHTTCSEEEEEEETTTC-SCH-HHHHHHHHHHHTTCCEEEEEEECTTTTTS
T ss_pred ccccCceEEEEeccccC-ccc-chHHHHHHHHHcCCCEEEEEEEccccccc
Confidence 46789999999988753 444 345567788899976 7889999999873
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.21 E-value=0.042 Score=44.84 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=54.6
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHH---HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a---~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
.+.-..++|.+++|+++..|. ....+..++... .....++++|.||+|+.+... .+........++...+.+|.
T Consensus 70 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 148 (167)
T d1z0ja1 70 APMYYRGSAAAIIVYDITKEE-TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSA 148 (167)
T ss_dssp THHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred HHHHHhhccceEEEeeechhh-hhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEec
Confidence 334467899999999987652 223333333222 335678889999999954311 11122334567777788899
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 149 k~~~nV~e~f~~l 161 (167)
T d1z0ja1 149 KNAININELFIEI 161 (167)
T ss_dssp TTTBSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8888888765443
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.20 E-value=0.052 Score=45.00 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=52.7
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHH-------hCCCCEEEEEeCCCCCCHHHH-HHHHHHH-HhcCCe
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE-------STGIPLTLALNKVELVDEEVL-NTWKSRL-HTWGYE 138 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~-------~~~~~~~lvlnK~Dl~~~~~~-~~~~~~~-~~~g~~ 138 (391)
...+....++|.++++++...+ -....+.+++.... ..++|+++|.||+|+.+.... +...... ...++.
T Consensus 66 ~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 144 (184)
T d1vg8a_ 66 SLGVAFYRGADCCVLVFDVTAP-NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP 144 (184)
T ss_dssp CSCCGGGTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC
T ss_pred ccccccccCccEEEEeecccch-hhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCe
Confidence 3345567899999999998653 11222233322111 235799999999998654311 1111222 234677
Q ss_pred eEEEEcCCccchHHHhhc
Q 016339 139 PLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~ 156 (391)
.+.+|..++.+++.+-..
T Consensus 145 ~~e~Sak~~~gI~e~f~~ 162 (184)
T d1vg8a_ 145 YFETSAKEAINVEQAFQT 162 (184)
T ss_dssp EEECBTTTTBSHHHHHHH
T ss_pred EEEEcCCCCcCHHHHHHH
Confidence 788898888887776433
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.20 E-value=0.054 Score=45.49 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=54.8
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHH---HHHHHHhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTR---FLVEAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r---~L~~a~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+......++|.+++|+++..+. ....+.. .+......++++++|.||+|+.+... .+........++...+.+|
T Consensus 71 ~~~~~~~~a~~~i~v~d~t~~~-s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~S 149 (194)
T d2bcgy1 71 ITSSYYRGSHGIIIVYDVTDQE-SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETS 149 (194)
T ss_dssp CCGGGGTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHhccCCEEEEEEeCcchh-hhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEe
Confidence 3445668999999999987542 2222222 23333445678999999999976421 1222233456777888889
Q ss_pred cCCccchHHHh
Q 016339 144 VESKLGLDSLL 154 (391)
Q Consensus 144 ~~~~~~L~~ls 154 (391)
..++.+++.+-
T Consensus 150 Ak~g~gi~e~f 160 (194)
T d2bcgy1 150 ALDSTNVEDAF 160 (194)
T ss_dssp TTTCTTHHHHH
T ss_pred cCcCccHHHHH
Confidence 88888777653
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.19 E-value=0.02 Score=49.81 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+++||.|+-||||||+.+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999643
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.072 Score=43.77 Aligned_cols=85 Identities=20% Similarity=0.344 Sum_probs=51.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHH-HHH--HHHhCCCCEEEEEeCCCCCCHHHHH--------------HHHHH
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTR-FLV--EAESTGIPLTLALNKVELVDEEVLN--------------TWKSR 131 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r-~L~--~a~~~~~~~~lvlnK~Dl~~~~~~~--------------~~~~~ 131 (391)
..+.-..++|.+++|+++..|. +...+.. ++. .....++|++||.||+|+.+..... .....
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~-Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~ 144 (177)
T d1kmqa_ 66 LRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 144 (177)
T ss_dssp TGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred cchhhcccchhhhhhcccchhH-HHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHH
Confidence 3344577999999999987652 1222221 111 2233578999999999997643211 11122
Q ss_pred HHhcC-CeeEEEEcCCccchHHHh
Q 016339 132 LHTWG-YEPLFCSVESKLGLDSLL 154 (391)
Q Consensus 132 ~~~~g-~~~v~~s~~~~~~L~~ls 154 (391)
..+++ ...+.+|..++.+++++-
T Consensus 145 a~~~~~~~~~E~SAkt~~gi~e~F 168 (177)
T d1kmqa_ 145 ANRIGAFGYMECSAKTKDGVREVF 168 (177)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHH
T ss_pred HHHcCCcEEEEecCCCCcCHHHHH
Confidence 33455 355677888888888763
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.02 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.|.|.-|||||||||.|+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEeeCCCCCHHHHHHHHHhcC
Confidence 57899999999999999998743
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.03 Score=45.94 Aligned_cols=84 Identities=11% Similarity=0.157 Sum_probs=52.9
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHH---HHhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcCC
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVE---AESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~---a~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~~ 146 (391)
.-..++|.++++++...+. ....+..+... ....+.++++|.||+|+..... .+........+++..+.+|..+
T Consensus 74 ~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~ 152 (170)
T d1r2qa_ 74 MYYRGAQAAIVVYDITNEE-SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKT 152 (170)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HHhhCcceEEEEeccchhh-HHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCC
Confidence 3467999999999876542 22233333322 2335678899999999854311 1222233456788888899988
Q ss_pred ccchHHHhhc
Q 016339 147 KLGLDSLLQR 156 (391)
Q Consensus 147 ~~~L~~ls~~ 156 (391)
+.+++.+-..
T Consensus 153 g~~V~e~f~~ 162 (170)
T d1r2qa_ 153 SMNVNEIFMA 162 (170)
T ss_dssp CTTHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8887776443
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.84 E-value=0.035 Score=50.30 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
+|+..+|+|++|+|||||+-.|+.
T Consensus 67 kGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 67 KGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEeeCCCCCCHHHHHHHHHH
Confidence 999999999999999999776653
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.66 E-value=0.019 Score=55.54 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=24.4
Q ss_pred cccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 156 RLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 156 ~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+..+.+.++||+|||||-|.+.|++..
T Consensus 46 ei~ksNILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 46 EVTPKNILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccccccEEEECCCCCCHHHHHHHHHHHh
Confidence 4445679999999999999999999876
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.051 Score=44.50 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=49.5
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHH---HHH-HHhCCCCEEEEEeCCCCCC-----HHHHHHHHHHHHhcCCeeEEEE
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRF---LVE-AESTGIPLTLALNKVELVD-----EEVLNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~---L~~-a~~~~~~~~lvlnK~Dl~~-----~~~~~~~~~~~~~~g~~~v~~s 143 (391)
-..++|.+++|+++..| .+...+.++ ... ....+.|+++|.||+|+.+ .++...+ ..++++..+.+|
T Consensus 69 ~~~~~~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~---a~~~~~~~~e~S 144 (168)
T d2atva1 69 HMRWGEGFVLVYDITDR-GSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL---ATELACAFYECS 144 (168)
T ss_dssp HHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH---HHHHTSEEEECC
T ss_pred hhcccccceeecccCCc-cchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHH---HHHhCCeEEEEc
Confidence 35689999999999865 223333332 222 2335789999999999853 3333333 345678878888
Q ss_pred cCCccc-hHHHh
Q 016339 144 VESKLG-LDSLL 154 (391)
Q Consensus 144 ~~~~~~-L~~ls 154 (391)
..++.+ ++.+-
T Consensus 145 aktg~gnV~e~F 156 (168)
T d2atva1 145 ACTGEGNITEIF 156 (168)
T ss_dssp TTTCTTCHHHHH
T ss_pred cccCCcCHHHHH
Confidence 776654 66543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.51 E-value=0.038 Score=48.32 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+.|.||+|+||||+.++++..+
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~l 58 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKGL 58 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eeEEEECCCCCcHHHHHHHHHHHh
Confidence 347789999999999999987543
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.41 E-value=0.028 Score=51.86 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=27.9
Q ss_pred CCccchHHHhhcc------------cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 145 ESKLGLDSLLQRL------------RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 145 ~~~~~L~~ls~~i------------~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|+..+++.|...+ +.-.+.++||+|+|||.|.+.|+-..
T Consensus 27 GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 27 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence 5556666655433 11267889999999999999988653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.11 Score=43.06 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=49.6
Q ss_pred cccccccceeEEEEEecCCCCCHHHH-HHHHH--HHHhCCCCEEEEEeCCCCCCHHHHH--------------HHHHHHH
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFAL-TRFLV--EAESTGIPLTLALNKVELVDEEVLN--------------TWKSRLH 133 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l-~r~L~--~a~~~~~~~~lvlnK~Dl~~~~~~~--------------~~~~~~~ 133 (391)
.....++|.+++|+++..|.. ...+ ..++. .....+.++++|.||+||.++.... .......
T Consensus 75 ~~~~~~a~~~ilv~d~t~~~S-f~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~ 153 (185)
T d2atxa1 75 PLSYPMTDVFLICFSVVNPAS-FQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK 153 (185)
T ss_dssp GGGCTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH
T ss_pred hhcccccceeeeccccchHHH-HHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHH
Confidence 345678999999999987531 1111 22222 2234578999999999997643211 1111222
Q ss_pred hcC-CeeEEEEcCCccchHHHh
Q 016339 134 TWG-YEPLFCSVESKLGLDSLL 154 (391)
Q Consensus 134 ~~g-~~~v~~s~~~~~~L~~ls 154 (391)
++| ..-+.+|..++.+++++-
T Consensus 154 ~~~~~~~~E~SAk~~~gv~e~F 175 (185)
T d2atxa1 154 EIGACCYVECSALTQKGLKTVF 175 (185)
T ss_dssp HHTCSCEEECCTTTCTTHHHHH
T ss_pred HcCCCEEEEecCCCCcCHHHHH
Confidence 344 355667888888777763
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=92.31 E-value=0.052 Score=50.99 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=21.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+.++||+|||||-|.+.|+...
T Consensus 69 ~niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 69 SNILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred cceeeeCCCCccHHHHHHHHHhhc
Confidence 458999999999999999998764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.28 E-value=0.048 Score=44.80 Aligned_cols=83 Identities=11% Similarity=0.157 Sum_probs=50.6
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHH---HHHHHhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcCCc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRF---LVEAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVESK 147 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~---L~~a~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~~~ 147 (391)
-...+|.+++|+++..|. +...+..+ +......+.++++|.||.|+..... ..........++++.+.+|+.++
T Consensus 75 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g 153 (173)
T d2fu5c1 75 YYRGAMGIMLVYDITNEK-SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN 153 (173)
T ss_dssp TTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---
T ss_pred hccCCCEEEEEEECCChh-hHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 467899999999987652 33334333 3333456678999999999976421 11122344567888888999888
Q ss_pred cchHHHhhc
Q 016339 148 LGLDSLLQR 156 (391)
Q Consensus 148 ~~L~~ls~~ 156 (391)
.+++.+-..
T Consensus 154 ~gv~e~f~~ 162 (173)
T d2fu5c1 154 INVENAFFT 162 (173)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 888766433
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.25 E-value=0.037 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.2
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+..+++|+|+.|+|||||.+.+...
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999988643
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.12 Score=42.20 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=51.3
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHH-------HhCCCCEEEEEeCCCCCCH----HHHHHHHHHHHhc-CC
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA-------ESTGIPLTLALNKVELVDE----EVLNTWKSRLHTW-GY 137 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a-------~~~~~~~~lvlnK~Dl~~~----~~~~~~~~~~~~~-g~ 137 (391)
......++|.++++++...+ .+...+..++... ...+.|+++|.||+|+.+. ++...| ..+. .+
T Consensus 72 ~~~~~~~~~~~i~~~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~---~~~~~~~ 147 (174)
T d1wmsa_ 72 RTPFYRGSDCCLLTFSVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAW---CRDNGDY 147 (174)
T ss_dssp HGGGGTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHH---HHHTTCC
T ss_pred hhhhhhccceEEEEEeeecc-cccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHH---HHHcCCC
Confidence 34567899999999998754 2222333332211 1246799999999999653 334443 3333 35
Q ss_pred eeEEEEcCCccchHHHh
Q 016339 138 EPLFCSVESKLGLDSLL 154 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls 154 (391)
..+.+|..++.+++.+-
T Consensus 148 ~~~e~Sak~~~gI~e~f 164 (174)
T d1wmsa_ 148 PYFETSAKDATNVAAAF 164 (174)
T ss_dssp CEEECCTTTCTTHHHHH
T ss_pred eEEEEcCCCCcCHHHHH
Confidence 66778988888888763
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.89 E-value=0.091 Score=42.40 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=50.4
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHH----HHHhCCCCEEEEEeCCCCCCHHHHHHHHHHH--Hhc---CCee
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLV----EAESTGIPLTLALNKVELVDEEVLNTWKSRL--HTW---GYEP 139 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~----~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~--~~~---g~~~ 139 (391)
..+....++|.+++++.+..+ ........++. .....++|+++|.||+|+.+..........+ ..+ ++..
T Consensus 62 ~~~~~~~~~~~~i~v~d~~d~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (165)
T d1ksha_ 62 YWRNYFESTDGLIWVVDSADR-QRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRI 140 (165)
T ss_dssp TGGGGCTTCSEEEEEEETTCG-GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHhhhhhhhcceeeeecccc-hhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEE
Confidence 345567899999999987653 22333323332 2334778999999999996532222211221 222 2355
Q ss_pred EEEEcCCccchHHHh
Q 016339 140 LFCSVESKLGLDSLL 154 (391)
Q Consensus 140 v~~s~~~~~~L~~ls 154 (391)
+.+|..++.+++++-
T Consensus 141 ~~~Sa~~g~gv~e~~ 155 (165)
T d1ksha_ 141 QGCSAVTGEDLLPGI 155 (165)
T ss_dssp EECCTTTCTTHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677888888777653
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.77 E-value=0.041 Score=44.79 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=47.8
Q ss_pred cccccceeEEEEEecCCCCCHHHH----HHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCeeEEEE
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFAL----TRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPLFCS 143 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l----~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~-----~~~g~~~v~~s 143 (391)
...++|.+++|+++..+. ....+ ..++......++|+++|.||.|+............+ ...++..+.+|
T Consensus 67 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~S 145 (164)
T d1zd9a1 67 YCRGVSAIVYMVDAADQE-KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSIS 145 (164)
T ss_dssp HHTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred cccccchhhccccccccc-ccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 468999999999987542 22222 223222234578999999999996532222222222 12233556777
Q ss_pred cCCccchHHH
Q 016339 144 VESKLGLDSL 153 (391)
Q Consensus 144 ~~~~~~L~~l 153 (391)
..++.+++.+
T Consensus 146 a~~g~gv~e~ 155 (164)
T d1zd9a1 146 CKEKDNIDIT 155 (164)
T ss_dssp TTTCTTHHHH
T ss_pred CcCCcCHHHH
Confidence 7777777654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=91.66 E-value=0.33 Score=39.04 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=51.6
Q ss_pred cccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHH----HHHHHHhcC--CeeEEEEcCCcc
Q 016339 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT----WKSRLHTWG--YEPLFCSVESKL 148 (391)
Q Consensus 75 anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~----~~~~~~~~g--~~~v~~s~~~~~ 148 (391)
..++.++.+.....+ . ...-..++......+.++++++||+|+++...... +...+..++ .+.+.+|..++.
T Consensus 97 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~ 174 (188)
T d1puia_ 97 QSLQGLVVLMDIRHP-L-KDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQ 174 (188)
T ss_dssp TTEEEEEEEEETTSC-C-CHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTB
T ss_pred hheeEEEEeeccccc-c-hhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCC
Confidence 445554444444432 2 22334556666778899999999999998865433 233344443 366888999999
Q ss_pred chHHHhhcc
Q 016339 149 GLDSLLQRL 157 (391)
Q Consensus 149 ~L~~ls~~i 157 (391)
+++.+.-.|
T Consensus 175 Gid~L~~~i 183 (188)
T d1puia_ 175 GVDKLRQKL 183 (188)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 998875443
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.54 E-value=0.043 Score=47.11 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+.|.||+|+||||+.+.++..+
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHhc
Confidence 458999999999999999988754
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.50 E-value=0.042 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=19.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHh
Q 016339 158 RDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
....+.|+|++|||||++++.|+
T Consensus 49 ~~~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEEEeCCCCcHHHHHHHHH
Confidence 44668999999999999997655
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.14 Score=42.64 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=50.5
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHH---HHHhCCCCEEEEEeCCCCCCHH-----------------HHHH
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLV---EAESTGIPLTLALNKVELVDEE-----------------VLNT 127 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~---~a~~~~~~~~lvlnK~Dl~~~~-----------------~~~~ 127 (391)
.+.+....++|.+++|+++..+. +...+..++. .....+.++++|.||+||.+.. +...
T Consensus 66 ~~~~~~~~~~~~~ilv~d~~~~~-Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 144 (191)
T d2ngra_ 66 RLRPLSYPQTDVFLVCFSVVSPS-SFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144 (191)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hhhhhcccccceeecccccchHH-HHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHH
Confidence 34444567999999999998763 2333432222 1233578999999999985432 2222
Q ss_pred HHHHHHhc-CCeeEEEEcCCccchHHHh
Q 016339 128 WKSRLHTW-GYEPLFCSVESKLGLDSLL 154 (391)
Q Consensus 128 ~~~~~~~~-g~~~v~~s~~~~~~L~~ls 154 (391)
|.. ++ +..-+.+|..++.+++.+-
T Consensus 145 ~~~---~~~~~~~~e~SAk~~~~V~e~f 169 (191)
T d2ngra_ 145 LAR---DLKAVKYVECSALTQKGLKNVF 169 (191)
T ss_dssp HHH---HTTCSCEEECCTTTCTTHHHHH
T ss_pred HHH---HcCCCeEEEEeCCCCcCHHHHH
Confidence 222 32 3455667877777777653
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=91.22 E-value=0.045 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=20.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..++.+.||+|||||.|.++|++..
T Consensus 123 ~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 123 SGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp SEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHh
Confidence 3355668999999999999999864
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.11 Score=42.99 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=49.7
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHH-HHHH--HHhCCCCEEEEEeCCCCCCHHHHH--------------HHHHHHHh
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTR-FLVE--AESTGIPLTLALNKVELVDEEVLN--------------TWKSRLHT 134 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r-~L~~--a~~~~~~~~lvlnK~Dl~~~~~~~--------------~~~~~~~~ 134 (391)
....++|.+++|+++..+. +...+.. ++.. ....++|++||.||+|+.++.... .......+
T Consensus 72 ~~~~~~~~~ilv~d~~~~~-sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 150 (183)
T d1mh1a_ 72 LSYPQTDVSLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 150 (183)
T ss_dssp GGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred hcccccceeeeeeccchHH-HHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHH
Confidence 3467999999999987652 1222221 2222 234578999999999987653221 11122234
Q ss_pred cC-CeeEEEEcCCccchHHHh
Q 016339 135 WG-YEPLFCSVESKLGLDSLL 154 (391)
Q Consensus 135 ~g-~~~v~~s~~~~~~L~~ls 154 (391)
++ +..+.+|..++.+++.+-
T Consensus 151 ~~~~~~~E~SAk~~~~V~e~F 171 (183)
T d1mh1a_ 151 IGAVKYLECSALTQRGLKTVF 171 (183)
T ss_dssp TTCSEEEECCTTTCTTHHHHH
T ss_pred cCCceEEEcCCCCCcCHHHHH
Confidence 44 455677888888887763
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.04 E-value=0.15 Score=41.49 Aligned_cols=83 Identities=14% Similarity=0.030 Sum_probs=50.0
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCeeEE
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPLF 141 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~-----~~~g~~~v~ 141 (391)
+.-..++|.+++|+.+..+ -....+..++... .....++++|.||+|+.+..........+ ...++..+.
T Consensus 74 ~~~~~~~~~ii~v~D~s~~-~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e 152 (173)
T d1e0sa_ 74 RHYYTGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP 152 (173)
T ss_dssp GGGTTTCCEEEEEEETTCG-GGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HhhhcccceEEEEEecccc-hhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEE
Confidence 3456789999999998654 2333344444332 23578999999999997542222111111 122334567
Q ss_pred EEcCCccchHHHh
Q 016339 142 CSVESKLGLDSLL 154 (391)
Q Consensus 142 ~s~~~~~~L~~ls 154 (391)
+|..++.+++++-
T Consensus 153 ~SA~tg~gv~e~~ 165 (173)
T d1e0sa_ 153 SCATSGDGLYEGL 165 (173)
T ss_dssp CBTTTTBTHHHHH
T ss_pred eeCCCCcCHHHHH
Confidence 7888888877653
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.98 E-value=0.062 Score=44.56 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.4
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|-|+=|||||||.+.|+.-.
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhc
Confidence 57899999999999999999998655
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.76 E-value=0.35 Score=38.85 Aligned_cols=87 Identities=11% Similarity=0.124 Sum_probs=55.0
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHH---HHHHHHHhCCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEEc
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALT---RFLVEAESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~---r~L~~a~~~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s~ 144 (391)
+......++|.+++|+++..|.. ...+. ...........+++++.||.|+.+... .+........+|++.+.+|.
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (166)
T d1g16a_ 67 ITTAYYRGAMGIILVYDITDERT-FTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSA 145 (166)
T ss_dssp CCHHHHTTEEEEEEEEETTCHHH-HHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBT
T ss_pred HHHHHHhcCCEEEEEEECCCccC-HHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECC
Confidence 33445789999999999987631 22222 223333344567788889999865421 11122234456888899999
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++++-..
T Consensus 146 ~~~~~v~e~f~~ 157 (166)
T d1g16a_ 146 KNDDNVNEIFFT 157 (166)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888888876443
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.76 E-value=0.051 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.728 Sum_probs=19.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhcC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl 182 (391)
....||||+|||||+++..|+..
T Consensus 44 ~n~llvG~~GvGKtaiv~~la~~ 66 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEECCCCCCHHHHHHHHHHH
Confidence 34799999999999999877753
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=90.72 E-value=0.41 Score=40.48 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=35.8
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCC-EEEEEeCCCCCCHH
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEE 123 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~-~~lvlnK~Dl~~~~ 123 (391)
.+..+|.+++|.++... ..+ +-.+.+..|...+++ +++++||.|+++++
T Consensus 86 ~~~~aD~allVVda~~G-~~~-QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~ 135 (196)
T d1d2ea3 86 GTAPLDGCILVVAANDG-PMP-QTREHLLLARQIGVEHVVVYVNKADAVQDS 135 (196)
T ss_dssp TSSCCSEEEEEEETTTC-SCH-HHHHHHHHHHHTTCCCEEEEEECGGGCSCH
T ss_pred HHhhcCeEEEEEEcCCC-Cch-hHHHHHHHHHHhcCCcEEEEEecccccccH
Confidence 46789999999998764 333 334566667777774 66779999998754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.68 E-value=0.14 Score=41.56 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=53.8
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHH---HHHhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcC
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLV---EAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~---~a~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~ 145 (391)
..-..++|.+++|+++..+. +...+..+.. .......++++|.||+|+..... .+........++++.+.+|..
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak 152 (170)
T d2g6ba1 74 HAYYRDAHALLLLYDVTNKA-SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK 152 (170)
T ss_dssp -CCGGGCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHhhcCCceeEEEecCCccc-chhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCC
Confidence 33467999999999987652 2333333332 22334668888999999876421 111122344568888899998
Q ss_pred CccchHHHhhc
Q 016339 146 SKLGLDSLLQR 156 (391)
Q Consensus 146 ~~~~L~~ls~~ 156 (391)
++.+++.+-..
T Consensus 153 ~g~gi~e~f~~ 163 (170)
T d2g6ba1 153 TGLNVDLAFTA 163 (170)
T ss_dssp TCTTHHHHHHH
T ss_pred CCcCHHHHHHH
Confidence 88888876443
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.23 E-value=0.13 Score=42.43 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=33.6
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHH---HHHHhCCCCEEEEEeCCCCCC
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFL---VEAESTGIPLTLALNKVELVD 121 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L---~~a~~~~~~~~lvlnK~Dl~~ 121 (391)
+....++|.+++|+++..+. +...+..++ ......+.++++|-||+|+.+
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~-Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (179)
T d1m7ba_ 68 PLSYPDSDAVLICFDISRPE-TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120 (179)
T ss_dssp GGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred cchhhhhhhhheeeecccCC-CHHHHHHHHHHHHhccCCcceEEEEEecccccc
Confidence 34577999999999997652 222232222 223346889999999999854
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.17 E-value=0.074 Score=48.31 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=23.4
Q ss_pred hHHHhhcccCCEEEEEecCCCcHHHHHHHHh
Q 016339 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 150 L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
+|.+.-..+|+..+|+|++|+|||||+-.++
T Consensus 59 ID~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 59 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred EecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 3333333399999999999999999976444
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.10 E-value=0.083 Score=47.31 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.|.++-|.||+|+|||||.-.++..
T Consensus 53 ~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 53 MGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEecCCCcHHHHHHHHHHHH
Confidence 6789999999999999998666543
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.96 E-value=0.06 Score=50.16 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 016339 161 TTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~ 180 (391)
.++|+|.-|+|||||+.+|.
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHH
Confidence 49999999999999999995
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.55 E-value=0.27 Score=39.67 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=54.4
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHH---HHHhCCCCEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCee
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLV---EAESTGIPLTLALNKVELVDE--------EVLNTWKSRLHTWGYEP 139 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~---~a~~~~~~~~lvlnK~Dl~~~--------~~~~~~~~~~~~~g~~~ 139 (391)
+....++|.+++||++..| .+...+..+.. .......++++|.||+|+.+. ++... ....+++..
T Consensus 70 ~~~~~~~~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~---~~~~~~~~~ 145 (170)
T d1ek0a_ 70 PMYYRNAQAALVVYDVTKP-QSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEK---LAEEKGLLF 145 (170)
T ss_dssp HHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHH---HHHHHTCEE
T ss_pred HHHHhccceEEEEEeCCcc-cchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHH---HHHHcCCEE
Confidence 3457899999999999765 22233333332 222345688899999998532 23333 344568888
Q ss_pred EEEEcCCccchHHHhhcc
Q 016339 140 LFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i 157 (391)
+.+|..++.+++.+-..+
T Consensus 146 ~e~Sak~g~gV~e~F~~i 163 (170)
T d1ek0a_ 146 FETSAKTGENVNDVFLGI 163 (170)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEecCCCCcCHHHHHHHH
Confidence 888998888888875543
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.13 E-value=0.54 Score=37.77 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=46.0
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHH-HHHH-HHHHHhcCC-eeEEEEcCCccc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-LNTW-KSRLHTWGY-EPLFCSVESKLG 149 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~-~~~~-~~~~~~~g~-~~v~~s~~~~~~ 149 (391)
..+.+|.++++.+.... ... ...+.........++++|+||+|.+.... .... ......+++ +.+.+|..++.+
T Consensus 82 ~~~~~~~~l~~~d~~~~--~~~-~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g 158 (179)
T d1egaa1 82 SIGDVELVIFVVEGTRW--TPD-DEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 158 (179)
T ss_dssp CCCCEEEEEEEEETTCC--CHH-HHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred chhhcceeEEEEecCcc--chh-HHHHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence 34567766666665432 222 22233334567889999999999887642 2221 122334554 567777776666
Q ss_pred hHHHhh
Q 016339 150 LDSLLQ 155 (391)
Q Consensus 150 L~~ls~ 155 (391)
++.+.-
T Consensus 159 i~~L~~ 164 (179)
T d1egaa1 159 VDTIAA 164 (179)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665533
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.03 E-value=0.19 Score=41.03 Aligned_cols=86 Identities=16% Similarity=0.122 Sum_probs=56.5
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s~ 144 (391)
.+....++|.+++|+++..+ .....+..++.... ....+++++.||.|...... ..........+++..+.+|.
T Consensus 73 ~~~~~~~~~~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa 151 (177)
T d1x3sa1 73 TPSYYRGAQGVILVYDVTRR-DTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASA 151 (177)
T ss_dssp HHHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHhcCCEEEEEEECCCc-cccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeC
Confidence 34456799999999998754 22333444544433 34467789999999865431 12233455678888888999
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++++-..
T Consensus 152 ~tg~gv~e~f~~ 163 (177)
T d1x3sa1 152 KTCDGVQCAFEE 163 (177)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888888876443
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=88.83 E-value=0.32 Score=39.09 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=48.1
Q ss_pred cccccceeEEEEEecCCCCCHHH---HHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeeEEEEc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFA---LTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEPLFCSV 144 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~---l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g~~~v~~s~ 144 (391)
.....+.++++++.......... ...+.......+.|+++|.||+|+............+. .-+.+.+.+|+
T Consensus 79 ~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 158 (177)
T d1zj6a1 79 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 158 (177)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred hhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeC
Confidence 45677888888887654322111 12222223446889999999999965433222222221 12234667788
Q ss_pred CCccchHHHh
Q 016339 145 ESKLGLDSLL 154 (391)
Q Consensus 145 ~~~~~L~~ls 154 (391)
.++.+++++-
T Consensus 159 ~tg~Gi~e~~ 168 (177)
T d1zj6a1 159 LTGEGLCQGL 168 (177)
T ss_dssp TTTBTHHHHH
T ss_pred CCCCCHHHHH
Confidence 8888888753
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=88.57 E-value=0.076 Score=47.99 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=24.0
Q ss_pred chHHHhhcccCCEEEEEecCCCcHHHHHHHHh
Q 016339 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 149 ~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
++|.+.-..+|+..+|+|++|+|||+|+..++
T Consensus 57 ~ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 57 AIDAMIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTTTTSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred EEeccccccCCceEeeccCCCCChHHHHHHHH
Confidence 34433333399999999999999999986543
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=88.44 E-value=0.12 Score=48.38 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.8
Q ss_pred hcccCCEEEEEecCCCcHHHHHHH
Q 016339 155 QRLRDQTTVIVGPSGVGKSSLINA 178 (391)
Q Consensus 155 ~~i~Ge~vaLvGpSGsGKSTLLn~ 178 (391)
..+.+.++.|.||+|+||||++..
T Consensus 159 ~al~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 159 VALTRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp HHHTBSEEEEECCTTSTHHHHHHH
T ss_pred HHHcCCeEEEEcCCCCCceehHHH
Confidence 334678999999999999998844
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=87.79 E-value=0.11 Score=46.56 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.2
Q ss_pred CEEEEEecCCCcHHHHH
Q 016339 160 QTTVIVGPSGVGKSSLI 176 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLL 176 (391)
..+.|.|++||||||.|
T Consensus 25 g~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVL 41 (318)
T ss_dssp SCEEEEECTTSCHHHHH
T ss_pred CCEEEEecCCccHHHHH
Confidence 35788999999999765
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=87.59 E-value=0.14 Score=45.83 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++.|.||.++||||++++|+.+.
T Consensus 104 ~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3588999999999999999999876
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=87.56 E-value=0.11 Score=46.00 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=14.1
Q ss_pred CEEEEEecCCCcHHHHH
Q 016339 160 QTTVIVGPSGVGKSSLI 176 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLL 176 (391)
..+.|+|++|+||||++
T Consensus 15 ~~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVI 31 (306)
T ss_dssp SEEEECCCTTSCHHHHH
T ss_pred CCEEEEeeCCccHHHHH
Confidence 35789999999999764
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.52 E-value=0.17 Score=45.37 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=22.4
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|.++-|.||+|||||||.-.++...
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CceEEEEecCCccchHHHHHHHHHHH
Confidence 67899999999999999997777643
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=87.40 E-value=0.14 Score=47.15 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=17.3
Q ss_pred cCCEEEEEecCCCcHHHHH
Q 016339 158 RDQTTVIVGPSGVGKSSLI 176 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLL 176 (391)
+|.+..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5789999999999999985
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=87.15 E-value=0.15 Score=47.19 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|=|+=||||||+++.|....
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l 30 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAA 30 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGG
T ss_pred EEEEECCccCCHHHHHHHHHHHh
Confidence 57889999999999999999865
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=87.06 E-value=0.14 Score=46.97 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=17.2
Q ss_pred cCCEEEEEecCCCcHHHHH
Q 016339 158 RDQTTVIVGPSGVGKSSLI 176 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLL 176 (391)
+|.+..+.|.||+|||||-
T Consensus 13 ~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 13 KGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 4788999999999999986
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.84 E-value=0.13 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|=|+=||||||+++.|....
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCcCCCHHHHHHHHHHHh
Confidence 47889999999999999998754
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=86.83 E-value=0.11 Score=44.68 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+-..++|.||+++|||++.++|+...
T Consensus 52 Kkn~i~~~GP~~TGKS~f~~sl~~~l 77 (205)
T d1tuea_ 52 KKNCLVFCGPANTGKSYFGMSFIHFI 77 (205)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHHHh
Confidence 44689999999999999999999876
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.72 E-value=0.64 Score=38.03 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=48.3
Q ss_pred ccccceeEEEEEecCCCCCHHHHHHHHHHHH------hCCCCEEEEEeCCCCCC-------HHHHHHHHHHHHhcCCeeE
Q 016339 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAE------STGIPLTLALNKVELVD-------EEVLNTWKSRLHTWGYEPL 140 (391)
Q Consensus 74 ~anvD~~liv~s~~~p~~~~~~l~r~L~~a~------~~~~~~~lvlnK~Dl~~-------~~~~~~~~~~~~~~g~~~v 140 (391)
..++|.+++||++..+ -+...+..+..... ....|+++|.||.|+.. .++...|... .+++..+
T Consensus 68 ~~~ad~~ilVfd~~~~-~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~--~~~~~~~ 144 (175)
T d2bmja1 68 SGWADAVIFVFSLEDE-NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCAD--MKRCSYY 144 (175)
T ss_dssp HHHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHT--STTEEEE
T ss_pred ccccceeEEEeecccc-hhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHH--hCCCeEE
Confidence 4578999999998764 22333444433221 23457888999888743 2333333221 2456667
Q ss_pred EEEcCCccchHHHhh
Q 016339 141 FCSVESKLGLDSLLQ 155 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~ 155 (391)
.+|+.++.+++.+-.
T Consensus 145 e~SAk~~~~v~~~F~ 159 (175)
T d2bmja1 145 ETCATYGLNVDRVFQ 159 (175)
T ss_dssp EEBTTTTBTHHHHHH
T ss_pred EeCCCCCcCHHHHHH
Confidence 789988888877643
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.68 E-value=0.19 Score=45.10 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.|.++-|.||+|+|||||.-.++.
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHH
T ss_pred cceeEEEecCCCcHHHHHHHHHHH
Confidence 689999999999999999755554
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=86.36 E-value=0.15 Score=47.23 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|=|+=||||||+++.|....
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l 29 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHF 29 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998765
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=85.17 E-value=0.2 Score=46.06 Aligned_cols=19 Identities=42% Similarity=0.660 Sum_probs=17.5
Q ss_pred cCCEEEEEecCCCcHHHHH
Q 016339 158 RDQTTVIVGPSGVGKSSLI 176 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLL 176 (391)
+|.+..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 5788999999999999997
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.93 E-value=0.25 Score=42.51 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.2
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 016339 161 TTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~ 180 (391)
.++++|.-++|||||+..|+
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 48999999999999999885
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.03 E-value=0.28 Score=42.88 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.4
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 016339 161 TTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~ 180 (391)
.++++|..++|||||+..|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999998885
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.82 E-value=1.4 Score=39.21 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=47.1
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEc
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~ 144 (391)
..++-+|.+++|.++... ... +-.+.+..|+..++|.++++||.|.....-...+.+.-..+|.+++.+.+
T Consensus 90 ~~l~~~D~avlVvda~~G-v~~-~T~~~w~~a~~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp~~~ 160 (276)
T d2bv3a2 90 RSMRVLDGAIVVFDSSQG-VEP-QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQL 160 (276)
T ss_dssp HHHHHCCEEEEEEETTTS-SCH-HHHHHHHHHHTTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEE
T ss_pred HHHHhhhheEEeccccCC-cch-hHHHHHHHHHHcCCCEEEEEecccccccccchhHHHHHHHhCCCeEEEEe
Confidence 456789999999988643 443 34556667789999999999999996544222222233456666655543
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.62 E-value=0.6 Score=40.74 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=48.4
Q ss_pred cccccceeEEEEEecCCC----CCH-HHHHHHHHHHHhCCCC-EEEEEeCCCCCCHH----HHHHH----HHHHHhc-CC
Q 016339 73 PVANVDHLLLLFSMDQPK----LEP-FALTRFLVEAESTGIP-LTLALNKVELVDEE----VLNTW----KSRLHTW-GY 137 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~----~~~-~~l~r~L~~a~~~~~~-~~lvlnK~Dl~~~~----~~~~~----~~~~~~~-g~ 137 (391)
.++-+|.+++|.++.... +.. .+....+..+...|++ +++++||+|+++.. ..... ...+.++ |+
T Consensus 122 g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~ 201 (245)
T d1r5ba3 122 GASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 201 (245)
T ss_dssp -TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCc
Confidence 457889999999987532 111 1344555667777886 77889999997421 11222 2233333 33
Q ss_pred ------eeEEEEcCCccchHHH
Q 016339 138 ------EPLFCSVESKLGLDSL 153 (391)
Q Consensus 138 ------~~v~~s~~~~~~L~~l 153 (391)
..+.+|..++.++.++
T Consensus 202 ~~~~~v~~VPiSA~~G~nI~~~ 223 (245)
T d1r5ba3 202 NSKTDVKYMPVSAYTGQNVKDR 223 (245)
T ss_dssp CHHHHEEEEECBTTTTBTTSSC
T ss_pred CcccCCEEEEeeccCCCCcccc
Confidence 3477787777766554
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=83.12 E-value=0.21 Score=38.34 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.4
Q ss_pred cCCEEEEEecCCCcHHHHH
Q 016339 158 RDQTTVIVGPSGVGKSSLI 176 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLL 176 (391)
+|+.+.|.+|.|+|||...
T Consensus 6 ~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TTCEEEECCCTTSSTTTTH
T ss_pred cCCcEEEEcCCCCChhHHH
Confidence 6899999999999999543
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.40 E-value=0.31 Score=38.35 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=20.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.|-++.+-|-||+|||||-++|.-.
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~~ 29 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLST 29 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHH
Confidence 3667888999999999999998643
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=82.40 E-value=0.36 Score=38.64 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=19.6
Q ss_pred CCEEEEEecCCCcHHH-HHHHHhcC
Q 016339 159 DQTTVIVGPSGVGKSS-LINALRSS 182 (391)
Q Consensus 159 Ge~vaLvGpSGsGKST-LLn~L~gl 182 (391)
|....++||=.||||| ||+.+...
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~ 26 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRL 26 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHH
Confidence 6778999999999999 66666543
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=82.05 E-value=0.26 Score=43.30 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 016339 161 TTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~ 180 (391)
.++++|.-++|||||+..|+
T Consensus 26 Ni~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 26 NIVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEEECGGGTHHHHHHHHH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 38999999999999999994
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.86 E-value=0.57 Score=38.95 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=28.7
Q ss_pred ccccccceeEEEEEecCCCCCHH----HHHHHHHHHHh--CCCCEEEEEeCCCCCCH
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPF----ALTRFLVEAES--TGIPLTLALNKVELVDE 122 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~----~l~r~L~~a~~--~~~~~~lvlnK~Dl~~~ 122 (391)
....++|.+++|+.+........ .+...+..... .++|+++|.||+|+...
T Consensus 67 ~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a 123 (207)
T d2fh5b1 67 RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123 (207)
T ss_dssp HHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred hhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence 34578888888887653221111 12223322222 34567778899999753
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=81.35 E-value=0.45 Score=41.66 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.+.-+.|.|+.|+||+++.++|-..
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~~ 46 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHKL 46 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHh
Confidence 4677999999999999999999643
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=80.80 E-value=0.49 Score=36.93 Aligned_cols=84 Identities=17% Similarity=0.060 Sum_probs=51.5
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHH----HHHHHhCCCCEEEEEeCCCCCCHHHHHHHHH-----HHHhcCCeeEEE
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRF----LVEAESTGIPLTLALNKVELVDEEVLNTWKS-----RLHTWGYEPLFC 142 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~----L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~-----~~~~~g~~~v~~ 142 (391)
....++|.+++++++..+.. ...+... +........++++|.||.|+.+......... .....++..+.+
T Consensus 63 ~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 141 (160)
T d1r8sa_ 63 HYFQNTQGLIFVVDSNDRER-VNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 141 (160)
T ss_dssp HHTTTCSEEEEEEETTCGGG-HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEEC
T ss_pred hhhccceeEEEEEEecChHH-HHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEe
Confidence 34678899999998876532 2222222 2222345678899999999876432222111 112345567788
Q ss_pred EcCCccchHHHhhc
Q 016339 143 SVESKLGLDSLLQR 156 (391)
Q Consensus 143 s~~~~~~L~~ls~~ 156 (391)
|..++.+++++-.+
T Consensus 142 SAktg~gi~e~~~~ 155 (160)
T d1r8sa_ 142 CATSGDGLYEGLDW 155 (160)
T ss_dssp BTTTTBTHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 99999988876543
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=80.79 E-value=1 Score=38.38 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=35.1
Q ss_pred cccccceeEEEEEecCCCC-----CHHHHHHHHHHHHhCCCC-EEEEEeCCCCCC
Q 016339 73 PVANVDHLLLLFSMDQPKL-----EPFALTRFLVEAESTGIP-LTLALNKVELVD 121 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~-----~~~~l~r~L~~a~~~~~~-~~lvlnK~Dl~~ 121 (391)
.++=+|.+++|.++.+-.. ...+..+.+..+...+++ +++++||.|+..
T Consensus 101 g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~ 155 (224)
T d1jnya3 101 GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 155 (224)
T ss_dssp TSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred HHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCC
Confidence 3566899999999875311 122455677778888885 677799999985
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=80.69 E-value=0.32 Score=37.84 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHh
Q 016339 159 DQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
.+...|.+|.|+|||+++-.++
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHH
Confidence 3567889999999999875444
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.19 E-value=1.4 Score=35.98 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=16.4
Q ss_pred HHhCCCCEEEEEeCCCCCCH
Q 016339 103 AESTGIPLTLALNKVELVDE 122 (391)
Q Consensus 103 a~~~~~~~~lvlnK~Dl~~~ 122 (391)
+...++|+++|+||+|+.+.
T Consensus 107 ~~~~~~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 107 SCENGIDILIACNKSELFTA 126 (209)
T ss_dssp HSTTCCCEEEEEECTTSTTC
T ss_pred HHhccCCeEEEEEeeccccc
Confidence 34578899999999999764
|