Citrus Sinensis ID: 016342

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNNVLHSSTEVSIRTYIMILIILHVMCCTLVDLD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEccc
Coil and Loop (DISEMBL)
mykireikNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHvfsdfsslgtgketeeTNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNeeifkifppswhvpylLNIQFCKKTRKQLEGILdnlterpdVGTLLLALQRTIEFEDELAekfggdsrsseigldieeigrpennrqnVSDIRKKYERKLAanqgnsteekdgnkdlsvpgagfnfRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWdieegsqnnvlhssteVSIRTYIMILIILHVMCCTLVDLD
Flexible Loop (DISEMBL)
mykireiknkaeqsetMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQifegaelakldkterRYAWIKRrirtneeifkifppswhvPYLLNIQFCKKTRKQLEGILdnlterpdvGTLLLALQRTIEFEDElaekfggdsrsseigldieeigrpennrqnvsDIRKKYERKLAanqgnsteekdgnkdlsvpGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETwdieegsqnnvlhssteVSIRTYIMILIILHVMCCTLVDLD
Low Complexity Region (SEG)
MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNNVLHSSTEVSIRTYIMILIILHVMCCTLVDLD
Disordered region (IsUnstruct)
*****************VQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGT*****ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDEL*************************************************************GAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNNVLHSSTEVSIRTYIMILIILHVMCCTLVD**
Disordered Region (DISOPRED)
********************ICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSS*****************DACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKF**************************************************************FRRIISSCFEPHLTAYVELEERTLMENLEK*****************LHSSTEVSIRTYIMILIILHVMCCTLVDLD
Disordered Region (DISEMBL)
MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAA************KDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNNVLHSSTEVSIRTYIMILIILHVMCCTLVDLD
Disordered Region (DISPRO)
*YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGD*****************NNRQNVSDIRKKYERKLAANQ****************GAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEET*********NVLHSSTEVSIRTYIMILIILHVMCCTLVDLD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYKxxxxxxxxxxxxxxxxxxxxxIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNxxxxxxxxxxxxxxxxxxxxxPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLxxxxxxxxxxxxxxxxxxxxxNVLHSSTEVSIRTYIMILIILHVMCCTLVDLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	391	2.2.26 [Sep-21-2011]
Q5VIR6	699	Vacuolar protein sorting-	no	no	0.854	0.477	0.368	2e-56
Q5R5J4	699	Vacuolar protein sorting-	yes	no	0.854	0.477	0.368	2e-56
Q8CCB4	832	Vacuolar protein sorting-	yes	no	0.854	0.401	0.365	6e-56
Q5ZLD7	831	Vacuolar protein sorting-	yes	no	0.838	0.394	0.362	9e-56
P87129	756	Vacuolar protein sorting-	yes	no	0.800	0.414	0.255	4e-29
P34561	798	Vacuolar protein sorting-	yes	no	0.621	0.304	0.332	7e-29
P47061	822	Vacuolar protein sorting-	yes	no	0.636	0.302	0.228	9e-10

>sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/353 (36%), Positives = 203/353 (57%), Gaps = 19/353 (5%)

Query: 3   KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
           KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query: 63  QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD----FSSLGTG 118
           QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +D    F S GT 
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
           +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
           RYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL 
Sbjct: 287 RYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLF 346

Query: 237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
           A+QRT  FE  LA++F G + +      +E    P +    + D       +LA  +G+ 
Sbjct: 347 AIQRTTNFEGFLAKRFSGCTLTDGTLKKLE--SPPPSTNPFLEDEPTPEMEELATEKGDL 404

Query: 297 TEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
            + K        P A  N F  I+S CFEPHL  Y+E +++ L E +++ V +
Sbjct: 405 DQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVAD 450

May be involved in retrograde transport of early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.
Homo sapiens (taxid: 9606)

>sp|Q5R5J4|VPS53_PONAB Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii GN=VPS53 PE=2 SV=1

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/353 (36%), Positives = 203/353 (57%), Gaps = 19/353 (5%)

Query: 3   KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
           KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query: 63  QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD----FSSLGTG 118
           QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +D    F S GT 
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
           +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
           RYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL 
Sbjct: 287 RYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLF 346

Query: 237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
           A+QRT  FE  LA++F G + +      +E    P +    + D       +LA  +G+ 
Sbjct: 347 AIQRTTNFEGFLAKRFSGCTLTDGTLKKLE--SPPPSTNPFLEDEPTPEMEELATEKGDL 404

Query: 297 TEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
            + K        P A  N F  I+S CFEPHL  Y+E +++ L E +++ V +
Sbjct: 405 DQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVAD 450

May be involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Pongo abelii (taxid: 9601)

>sp|Q8CCB4|VPS53_MOUSE Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus GN=Vps53 PE=2 SV=1

 Score =  218 bits (555), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 203/353 (57%), Gaps = 19/353 (5%)

Query: 3   KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
           KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query: 63  QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD----FSSLGTG 118
           QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +D    F S GT 
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
           +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
           RYAW+KR++   EE + ++FP  W +   ++++FC  TR +L  I+    +  +V  LL 
Sbjct: 287 RYAWVKRQLVDYEEKYGRMFPREWCMTERISVEFCHVTRAELSKIMRARAKEIEVKLLLF 346

Query: 237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
           A+QRT  FE  LA++F G + +      +E    P +    + D       +LA  +G  
Sbjct: 347 AIQRTTNFEGFLAKRFSGCTLTDGTLKKLE--SPPPSTNPFLEDETTPEMEELALEKGEL 404

Query: 297 TEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
            + K        P A  N F  I+S CFEPHL  Y+E +++ L E +++ V +
Sbjct: 405 EQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLSELIDRFVAD 450

May be involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Mus musculus (taxid: 10090)

>sp|Q5ZLD7|VPS53_CHICK Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus GN=VPS53 PE=2 SV=1

 Score =  218 bits (554), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 202/359 (56%), Gaps = 31/359 (8%)

Query: 3   KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
           KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct: 109 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 168

Query: 63  QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD----FSSLGTG 118
           QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +D    F S GT 
Sbjct: 169 QYGEVANLLQGVVNVLEHFNKYMGIPQIRQLSERVKAAQNELGQQILADFEEAFPSQGTK 228

Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
           +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct: 229 RPGGPSNVLR---DACLVANVLDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 285

Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
           RYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL 
Sbjct: 286 RYAWIKRQLVDYEEKYGRMFPQEWCMTERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLF 345

Query: 237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
           A+QRT  FE  LA++F G + +         + +PE    + +         L    G  
Sbjct: 346 AIQRTTNFEGLLAKRFSGCTLADGT------VKKPEAPPPSTNPF-------LEDETGTE 392

Query: 297 TEE-------KDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
           T+E        D  K   VP   F+   I+S CFEPHL  Y+E +++ L E +++ V +
Sbjct: 393 TDEIVIEKSDADKPKKPKVPDNPFH--GIVSKCFEPHLYVYIESQDKNLSELIDRFVAD 449

May be involved in retrograde transport of early and late endosomes to the late Golgi.

Gallus gallus (taxid: 9031)

>sp|P87129|VPS53_SCHPO Vacuolar protein sorting-associated protein 53 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps53 PE=1 SV=1

 Score =  129 bits (324), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 167/368 (45%), Gaps = 55/368 (14%)

Query: 7   IKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKE 66
           +++ AE +++ + ++  +IK LDFAK+++ T++T L RL MLV+A E+L+ +   +++ E
Sbjct: 91  LQSVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKLRTLRQNQKFGE 150

Query: 67  AAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNL 126
           A + ++A  QL + F+ YR + +I  L       ++     VF  F S    +       
Sbjct: 151 AISLMQATLQLLNFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFKKESGMRGGF 210

Query: 127 ----LQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYAW 181
               +Q L++ C  +D       E ++  +CR +L  + ++F E  E   L+   RRY W
Sbjct: 211 SPSSVQYLNELCRFIDIFAGDPPESVIRWYCRHQLEDFMKVFRENEEAGSLENLPRRYTW 270

Query: 182 IKRRIRTNEEIFK-IFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
            K+ ++T +++ K IFPP W V + L   FC++T+  L  +L +  +R  +   + +L++
Sbjct: 271 FKKLLQTYDQLHKPIFPPHWKVDFRLYEVFCEETKNDLSKLLKD--DRLSLQVFVASLEQ 328

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFE  +  +F                                Y  K   N     +E+
Sbjct: 329 TLEFESFIDHRF--------------------------------YNTKSRFNSNFEPKER 356

Query: 301 DGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNN 360
                L             SS FEPH T Y   + +      E    E+    +E SQ  
Sbjct: 357 QAYNAL-------------SSVFEPHYTLYFNQQSQEFSILFENFALEKQTSTDESSQ-- 401

Query: 361 VLHSSTEV 368
           VL SS ++
Sbjct: 402 VLSSSIKL 409

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P34561|VPS53_CAEEL Vacuolar protein sorting-associated protein 53 homolog OS=Caenorhabditis elegans GN=vps-53 PE=3 SV=3

 Score =  128 bits (322), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 133/253 (52%), Gaps = 10/253 (3%)

Query: 4   IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQ 63
           I  I+ + + S+ +V+E+ RDIK+LD AK+++T +IT LH L +L++ VE L     K+ 
Sbjct: 101 IGSIRERTKSSDEIVREMTRDIKQLDIAKRNLTASITTLHHLHILLTGVESLGAWVDKKD 160

Query: 64  YKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDF-SSLGTGKETE 122
           Y   A QL A+  +   F+AY++  +I  L  +   +K  L   +  D  ++  TG+   
Sbjct: 161 YSSIARQLPAILNVLQLFDAYKESDQIANLSGQLDKLKASLTIQLAKDLKNAFQTGQ--- 217

Query: 123 ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYAW 181
              L  +++D C V  ALE +V+E  V  F  ++L+ Y  I+ +  E A LDK + RY W
Sbjct: 218 ---LSDRITDMCRVAAALEGNVKENFVKWFIEQQLSEYVIIYADNEEGAWLDKVDDRYKW 274

Query: 182 IKRRIRTNEE--IFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQ 239
             R++   E   +  IFP  WH+   L  +FC  TR  L  I+    +  D   L  A+Q
Sbjct: 275 FVRKLTDFERAGLSNIFPADWHMGRRLTSEFCTVTRDILYRIMTRRRQDLDWKLLGHAIQ 334

Query: 240 RTIEFEDELAEKF 252
            T  FE  L ++F
Sbjct: 335 HTKMFEALLTKRF 347

May be involved in retrograde transport of early and late endosomes to the late Golgi.

Caenorhabditis elegans (taxid: 6239)

>sp|P47061|VPS53_YEAST Vacuolar protein sorting-associated protein 53 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS53 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 119/258 (46%), Gaps = 9/258 (3%)

Query: 4   IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQ 63
            +E ++ +  +E  +  +   I  LD AKK++T ++T    L +L  +  Q   + S+  
Sbjct: 73  FKETQDVSASTELTISNLTEGISYLDIAKKNLTHSLTLFQNLKILTDSYIQCNELLSQGS 132

Query: 64  YKEAAAQLEAVNQLCSH-FEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETE 122
           +K+  +  + +  L  + F +Y+ + +I  L      +K    S +  ++++L +G    
Sbjct: 133 FKKMVSPYKIMCSLAENTFISYKSLDEINYLLSSISRLKGDTLSKIKQNYNALFSGGNIS 192

Query: 123 E--TNLLQQLSD-ACLVVDALEPSVREELVNNFCRRELTSYEQIFE-GAELAKLDKTERR 178
           E  T L  +L + AC ++D  + S R ++++    + L   ++IF    E   L+   RR
Sbjct: 193 EHDTALTMELREGACELLDC-DTSTRAQMIDWCLDKLLFEMKEIFRVDDEAGSLENLSRR 251

Query: 179 YAWIKRRIRT-NEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGIL--DNLTERPDVGTLL 235
           Y + K+ +   N +    F   W +   L   F   T K L+ +L  +   + P +   +
Sbjct: 252 YIYFKKILNNFNSKFADYFLKDWEMAVRLTTTFYHITHKDLQTLLKREFKDKNPSIDLFM 311

Query: 236 LALQRTIEFEDELAEKFG 253
            ALQ T++FE  +  +F 
Sbjct: 312 TALQSTLDFEKYIDVRFS 329

Involved in retrograde transport from early and late endosomes to late Golgi by linking the vesicle through the t-SNARE TGL1 to the Golgi, leading to the membrane fusion between late Golgi and endosomal vesicles.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
255583561	816	Vacuolar protein sorting protein, putati	0.938	0.449	0.902	0.0
225443241	826	PREDICTED: vacuolar protein sorting-asso	0.941	0.445	0.891	0.0
449463607	823	PREDICTED: vacuolar protein sorting-asso	0.941	0.447	0.872	0.0
356532932	820	PREDICTED: vacuolar protein sorting-asso	0.941	0.448	0.861	0.0
356532934	837	PREDICTED: vacuolar protein sorting-asso	0.941	0.439	0.861	0.0
356555815	820	PREDICTED: vacuolar protein sorting-asso	0.941	0.448	0.858	0.0
356555817	837	PREDICTED: vacuolar protein sorting-asso	0.941	0.439	0.858	0.0
357448261	851	Vacuolar protein sorting-associated prot	0.941	0.432	0.802	0.0
12322335	840	unknown protein [Arabidopsis thaliana]	0.938	0.436	0.814	1e-174
297852752	828	heat-intolerant 1 [Arabidopsis lyrata su	0.938	0.443	0.811	1e-173

>gi|255583561|ref|XP_002532537.1| Vacuolar protein sorting protein, putative [Ricinus communis] gi|223527749|gb|EEF29853.1| Vacuolar protein sorting protein, putative [Ricinus communis]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/368 (90%), Positives = 348/368 (94%), Gaps = 1/368 (0%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQ+MAS
Sbjct: 70  MYKIREIKTKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQLMAS 129

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 130 KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 189

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
           TEE NLLQ LSDACLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYA
Sbjct: 190 TEENNLLQHLSDACLVVDALEPSVREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYA 249

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRRIRTNEEI+KIFP SWHVPY L IQFCKKTRKQLEGILDNL E+PDVGTLLLALQR
Sbjct: 250 WIKRRIRTNEEIWKIFPLSWHVPYRLCIQFCKKTRKQLEGILDNLKEKPDVGTLLLALQR 309

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFEDELAEKFGG + S EIG +IEEIGR ++N QNVSDIRKKYERKLAANQG+  EEK
Sbjct: 310 TLEFEDELAEKFGGGTSSREIGNEIEEIGR-DSNSQNVSDIRKKYERKLAANQGSGIEEK 368

Query: 301 DGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNN 360
           DG+KDLSVPGAGFNFR I+SSCFEPHLT YVELE++TLMENL+KLVQEETWDIEEGSQNN
Sbjct: 369 DGSKDLSVPGAGFNFRGIVSSCFEPHLTIYVELEQKTLMENLDKLVQEETWDIEEGSQNN 428

Query: 361 VLHSSTEV 368
           VL SS ++
Sbjct: 429 VLSSSMQL 436

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443241|ref|XP_002271570.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Vitis vinifera] gi|298204761|emb|CBI25259.3| unnamed protein product [Vitis vinifera]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/368 (89%), Positives = 342/368 (92%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 70  MYKIREIKTKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 129

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQYKEAAAQLEAVNQLCSHFEAYRD+PKITELREKFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 130 KRQYKEAAAQLEAVNQLCSHFEAYRDVPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 189

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
           TEETNLLQQLSDACLVVDALEPSVRE+LV NFC RELTSY QIFEGAELAKLDK ERRYA
Sbjct: 190 TEETNLLQQLSDACLVVDALEPSVREDLVKNFCSRELTSYRQIFEGAELAKLDKAERRYA 249

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRR+RTNEEI+KIFPPSWHV YLL IQFCK TR QL  ILDNL E+PDVGTLLLALQR
Sbjct: 250 WIKRRLRTNEEIWKIFPPSWHVAYLLCIQFCKMTRTQLVEILDNLKEKPDVGTLLLALQR 309

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFE+ELAEKFGGD+R  +IG DIEE+ R EN  Q VSDIRKKYE+KLAANQG+ TEEK
Sbjct: 310 TLEFEEELAEKFGGDTRRKDIGNDIEEVDRGENKSQTVSDIRKKYEKKLAANQGSGTEEK 369

Query: 301 DGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNN 360
           DGNKDLSVPGAGFNFR IISSCFEPHLT YVELEE+TLMENLEKLVQEETWDIEEGSQ N
Sbjct: 370 DGNKDLSVPGAGFNFRGIISSCFEPHLTVYVELEEKTLMENLEKLVQEETWDIEEGSQTN 429

Query: 361 VLHSSTEV 368
           VL SS +V
Sbjct: 430 VLSSSVQV 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463607|ref|XP_004149523.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Cucumis sativus] gi|449505810|ref|XP_004162574.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Cucumis sativus]

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/368 (87%), Positives = 339/368 (92%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           M KIREIK KAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 70  MSKIREIKTKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 129

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQYKEAAAQLEAVNQLCSHFEAYRD PKITELREKFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 130 KRQYKEAAAQLEAVNQLCSHFEAYRDNPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 189

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
            EETNLLQQLSDAC VVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYA
Sbjct: 190 KEETNLLQQLSDACFVVDALEPSVREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYA 249

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRRIRTNEEI+KIFPPSWHVPY L IQFCKKTRKQLE ILDNL E+PDV TLLLALQR
Sbjct: 250 WIKRRIRTNEEIWKIFPPSWHVPYRLCIQFCKKTRKQLEDILDNLKEKPDVATLLLALQR 309

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFEDELAEKFGG +R  E G  IEE GR ++N QNVSDIRKKYE+KLA +QG   +EK
Sbjct: 310 TLEFEDELAEKFGGGARGKESGNGIEEFGREDSNSQNVSDIRKKYEKKLAVHQGPENDEK 369

Query: 301 DGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNN 360
           +G KD+SVPGAGFNFR I+SSCFEPHLT Y+ELEE+TLMENLEKLVQEETWDI+EGSQ+N
Sbjct: 370 NGIKDMSVPGAGFNFRGIVSSCFEPHLTVYIELEEKTLMENLEKLVQEETWDIDEGSQSN 429

Query: 361 VLHSSTEV 368
           VL SS ++
Sbjct: 430 VLSSSMQL 437

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532932|ref|XP_003535023.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 1 [Glycine max]

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/368 (86%), Positives = 341/368 (92%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KA QSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 70  MYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 129

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQYKEAAAQLEAVNQLCSHFEAYRDIPKI ELR+KFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 130 KRQYKEAAAQLEAVNQLCSHFEAYRDIPKIVELRDKFKNIKQILKSHVFSDFSSLGTGKE 189

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
           TEETNLLQQLSDACLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYA
Sbjct: 190 TEETNLLQQLSDACLVVDALEPSVREELVNNFCNRELTSYEQIFEGAELAKLDKTERRYA 249

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRR+R+NEEI+KIFP SWHV Y L I FCKKTRKQLE IL NL E+PDVGTLLLALQR
Sbjct: 250 WIKRRMRSNEEIWKIFPSSWHVSYRLCILFCKKTRKQLEDILGNLKEKPDVGTLLLALQR 309

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFEDELAEKFGG +++ EIG +IEEIG+  N+  +  DIRKKYE+KLAA+QG  +EEK
Sbjct: 310 TLEFEDELAEKFGGGTQNREIGNEIEEIGKGTNSSSSAMDIRKKYEKKLAAHQGGDSEEK 369

Query: 301 DGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNN 360
           DG+KDL+VPGAGFNFR I+SSCFEPHLT YVELEE+TLME+LEKLVQEETWDIEEGSQ+N
Sbjct: 370 DGSKDLAVPGAGFNFRGIVSSCFEPHLTVYVELEEKTLMESLEKLVQEETWDIEEGSQSN 429

Query: 361 VLHSSTEV 368
           VL SS ++
Sbjct: 430 VLSSSMQL 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532934|ref|XP_003535024.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 2 [Glycine max]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/368 (86%), Positives = 341/368 (92%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KA QSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 87  MYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 146

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQYKEAAAQLEAVNQLCSHFEAYRDIPKI ELR+KFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 147 KRQYKEAAAQLEAVNQLCSHFEAYRDIPKIVELRDKFKNIKQILKSHVFSDFSSLGTGKE 206

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
           TEETNLLQQLSDACLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYA
Sbjct: 207 TEETNLLQQLSDACLVVDALEPSVREELVNNFCNRELTSYEQIFEGAELAKLDKTERRYA 266

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRR+R+NEEI+KIFP SWHV Y L I FCKKTRKQLE IL NL E+PDVGTLLLALQR
Sbjct: 267 WIKRRMRSNEEIWKIFPSSWHVSYRLCILFCKKTRKQLEDILGNLKEKPDVGTLLLALQR 326

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFEDELAEKFGG +++ EIG +IEEIG+  N+  +  DIRKKYE+KLAA+QG  +EEK
Sbjct: 327 TLEFEDELAEKFGGGTQNREIGNEIEEIGKGTNSSSSAMDIRKKYEKKLAAHQGGDSEEK 386

Query: 301 DGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNN 360
           DG+KDL+VPGAGFNFR I+SSCFEPHLT YVELEE+TLME+LEKLVQEETWDIEEGSQ+N
Sbjct: 387 DGSKDLAVPGAGFNFRGIVSSCFEPHLTVYVELEEKTLMESLEKLVQEETWDIEEGSQSN 446

Query: 361 VLHSSTEV 368
           VL SS ++
Sbjct: 447 VLSSSMQL 454

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555815|ref|XP_003546225.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 1 [Glycine max]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/368 (85%), Positives = 341/368 (92%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KA QSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 70  MYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 129

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQY+EAAAQLEAVNQLCSHFEAYRDIPKI ELREKFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 130 KRQYREAAAQLEAVNQLCSHFEAYRDIPKIIELREKFKNIKQILKSHVFSDFSSLGTGKE 189

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
           TEETNLLQQLSDACLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYA
Sbjct: 190 TEETNLLQQLSDACLVVDALEPSVREELVNNFCNRELTSYEQIFEGAELAKLDKTERRYA 249

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRR+R+NEEI+KIFP SWHV Y L I FCKKTRKQLE IL NL E+PDVGTLLLALQR
Sbjct: 250 WIKRRMRSNEEIWKIFPSSWHVSYRLCILFCKKTRKQLEDILANLKEKPDVGTLLLALQR 309

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFEDELAEKFGG +++ EIG +IEEIG+  N+  +  DIRKKYE+KLAA+QG  +EEK
Sbjct: 310 TLEFEDELAEKFGGGTQNREIGNEIEEIGKGNNSSSSALDIRKKYEKKLAAHQGGDSEEK 369

Query: 301 DGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNN 360
           DG+KDL+VPGAGFNFR I+SSCFEPHLT YVELEE+TLME+LEKLVQEETWDIE+GSQ+N
Sbjct: 370 DGSKDLAVPGAGFNFRGIVSSCFEPHLTVYVELEEKTLMESLEKLVQEETWDIEDGSQSN 429

Query: 361 VLHSSTEV 368
           VL SS ++
Sbjct: 430 VLSSSMQL 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555817|ref|XP_003546226.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 2 [Glycine max]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/368 (85%), Positives = 341/368 (92%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KA QSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 87  MYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 146

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQY+EAAAQLEAVNQLCSHFEAYRDIPKI ELREKFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 147 KRQYREAAAQLEAVNQLCSHFEAYRDIPKIIELREKFKNIKQILKSHVFSDFSSLGTGKE 206

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
           TEETNLLQQLSDACLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYA
Sbjct: 207 TEETNLLQQLSDACLVVDALEPSVREELVNNFCNRELTSYEQIFEGAELAKLDKTERRYA 266

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRR+R+NEEI+KIFP SWHV Y L I FCKKTRKQLE IL NL E+PDVGTLLLALQR
Sbjct: 267 WIKRRMRSNEEIWKIFPSSWHVSYRLCILFCKKTRKQLEDILANLKEKPDVGTLLLALQR 326

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFEDELAEKFGG +++ EIG +IEEIG+  N+  +  DIRKKYE+KLAA+QG  +EEK
Sbjct: 327 TLEFEDELAEKFGGGTQNREIGNEIEEIGKGNNSSSSALDIRKKYEKKLAAHQGGDSEEK 386

Query: 301 DGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNN 360
           DG+KDL+VPGAGFNFR I+SSCFEPHLT YVELEE+TLME+LEKLVQEETWDIE+GSQ+N
Sbjct: 387 DGSKDLAVPGAGFNFRGIVSSCFEPHLTVYVELEEKTLMESLEKLVQEETWDIEDGSQSN 446

Query: 361 VLHSSTEV 368
           VL SS ++
Sbjct: 447 VLSSSMQL 454

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448261|ref|XP_003594406.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|355483454|gb|AES64657.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/394 (80%), Positives = 342/394 (86%), Gaps = 26/394 (6%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KA QSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 70  MYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 129

Query: 61  KRQYKEAAAQLE--------------------------AVNQLCSHFEAYRDIPKITELR 94
           KRQYKEAAAQLE                          AVNQLCSHFEAYRDIPKI ELR
Sbjct: 130 KRQYKEAAAQLEETCAVELNVATLLCIYKRLIPQLKLVAVNQLCSHFEAYRDIPKIIELR 189

Query: 95  EKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCR 154
           EKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSV+EELVNNFC 
Sbjct: 190 EKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVKEELVNNFCN 249

Query: 155 RELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKT 214
           RELTSYEQIFEGAELAKLDKTERRYAWIKRR+R+NEEI+KIFP SWHV Y L I FCKKT
Sbjct: 250 RELTSYEQIFEGAELAKLDKTERRYAWIKRRMRSNEEIWKIFPSSWHVSYRLCILFCKKT 309

Query: 215 RKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENN 274
           RKQLE IL NL E+PDVGTLLLALQRT+EFEDELAEKFGG +++ EIG +IEEIGR  N+
Sbjct: 310 RKQLEDILSNLKEKPDVGTLLLALQRTLEFEDELAEKFGGGTQNREIGNEIEEIGRSPNS 369

Query: 275 RQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELE 334
             N SDIRKKYE+KLAA+QG+ +EE+DG+KDL+VPGAGFNFR I+SSCFEPHLT YVELE
Sbjct: 370 SSNASDIRKKYEKKLAAHQGSESEERDGSKDLAVPGAGFNFRGIVSSCFEPHLTVYVELE 429

Query: 335 ERTLMENLEKLVQEETWDIEEGSQNNVLHSSTEV 368
           E+TLM++LEKLVQEETWDIEEG Q++VL SS ++
Sbjct: 430 EKTLMDSLEKLVQEETWDIEEGGQSSVLSSSMQL 463

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12322335|gb|AAG51191.1|AC079279_12 unknown protein [Arabidopsis thaliana]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 299/367 (81%), Positives = 330/367 (89%)

Query: 2   YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASK 61
           +KI+EIK+KAEQSE MVQEICRDIKKLDFAKK+ITTTITALHRLTMLVSAVEQLQVMASK
Sbjct: 95  HKIQEIKSKAEQSEAMVQEICRDIKKLDFAKKNITTTITALHRLTMLVSAVEQLQVMASK 154

Query: 62  RQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKET 121
           RQYKEAAAQLEAVNQLC+HFEAYRD+PKITELREK  NIKQILKSHVFSDFSSLGTGKET
Sbjct: 155 RQYKEAAAQLEAVNQLCNHFEAYRDVPKITELREKLNNIKQILKSHVFSDFSSLGTGKET 214

Query: 122 EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAW 181
           EETNLLQ+LSD+CLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYAW
Sbjct: 215 EETNLLQKLSDSCLVVDALEPSVREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYAW 274

Query: 182 IKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRT 241
           IKRRIRTNEEI+KIFP SWHVPY L IQFCK+TRKQ+E IL N+ E+P V  LLLALQ T
Sbjct: 275 IKRRIRTNEEIWKIFPASWHVPYRLCIQFCKQTRKQVESILVNMKEKPVVAILLLALQST 334

Query: 242 IEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKD 301
           +EFE EL +KFGG   + +I  DIEEIG  E+N QN+S IRKKYE+K AA+Q     EK 
Sbjct: 335 VEFEKELEKKFGGGVPTKDIEDDIEEIGTWEDNSQNISKIRKKYEKKFAASQETEENEKT 394

Query: 302 GNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNNV 361
           GNKDLSV GAGFNFR +ISSCFEPHLT Y+ELEE+TLM++LEK+VQEE+WD+E+GSQNNV
Sbjct: 395 GNKDLSVTGAGFNFRGMISSCFEPHLTPYIELEEKTLMDDLEKIVQEESWDVEDGSQNNV 454

Query: 362 LHSSTEV 368
           L SST+V
Sbjct: 455 LSSSTQV 461

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852752|ref|XP_002894257.1| heat-intolerant 1 [Arabidopsis lyrata subsp. lyrata] gi|297340099|gb|EFH70516.1| heat-intolerant 1 [Arabidopsis lyrata subsp. lyrata]

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 301/371 (81%), Positives = 332/371 (89%), Gaps = 4/371 (1%)

Query: 2   YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASK 61
           +KI+EIK+KAEQSE MVQEICRDIKKLDFAKK+ITTTITALHRLTMLVSAVEQLQVMASK
Sbjct: 71  HKIQEIKSKAEQSEAMVQEICRDIKKLDFAKKNITTTITALHRLTMLVSAVEQLQVMASK 130

Query: 62  RQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKET 121
           RQYKEAAAQLEAVNQLC+HFEAYRD+PKITELREK  NIKQILKSHVFSDFSSLGTGKET
Sbjct: 131 RQYKEAAAQLEAVNQLCNHFEAYRDVPKITELREKLNNIKQILKSHVFSDFSSLGTGKET 190

Query: 122 EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAW 181
           EETNLLQ+LSD+CLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYAW
Sbjct: 191 EETNLLQKLSDSCLVVDALEPSVREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYAW 250

Query: 182 IKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRT 241
           IKRRIRTNEEI+KIFP SWHVPY L IQFCK+TRKQ+E IL N+ E+P V  LLLALQRT
Sbjct: 251 IKRRIRTNEEIWKIFPASWHVPYRLCIQFCKQTRKQVESILVNMKEKPVVAILLLALQRT 310

Query: 242 IEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQ----GNST 297
           +EFE EL +KFGG   + +I  DIEEIG  E+N QN+S IRKKYE+K AA+Q        
Sbjct: 311 VEFEKELEKKFGGGVPTKDIEDDIEEIGTWEDNSQNISKIRKKYEKKFAASQESEENGFQ 370

Query: 298 EEKDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGS 357
           +EK GNKDLSV GAGFNFR +ISSCFEPHLT Y+ELEE+TLM++LEK+VQEETWDIE+GS
Sbjct: 371 QEKTGNKDLSVTGAGFNFRGMISSCFEPHLTPYIELEEKTLMDDLEKIVQEETWDIEDGS 430

Query: 358 QNNVLHSSTEV 368
           QNNVL SST++
Sbjct: 431 QNNVLSSSTQL 441

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
TAIR|locus:2036396	569	AT1G50970 "AT1G50970" [Arabido	0.690	0.474	0.690	8.1e-108
UNIPROTKB|F1RHI3	832	VPS53 "Uncharacterized protein	0.854	0.401	0.368	1.5e-56
UNIPROTKB|Q5VIR6	699	VPS53 "Vacuolar protein sortin	0.854	0.477	0.368	3.4e-54
MGI|MGI:1915549	832	Vps53 "vacuolar protein sortin	0.854	0.401	0.365	4.3e-54
UNIPROTKB|E2R1D2	832	VPS53 "Uncharacterized protein	0.854	0.401	0.371	1.2e-53
UNIPROTKB|E1BJW7	832	VPS53 "Uncharacterized protein	0.854	0.401	0.365	1.6e-53
ZFIN|ZDB-GENE-041114-199	832	vps53 "vacuolar protein sortin	0.856	0.402	0.364	3.5e-53
UNIPROTKB|Q5ZLD7	831	VPS53 "Vacuolar protein sortin	0.856	0.403	0.360	5.8e-53
DICTYBASE|DDB_G0285901	838	DDB_G0285901 "Vps53-like domai	0.890	0.415	0.328	8.9e-44
POMBASE|SPAC3A12.15	756	vps53 "GARP complex subunit Vp	0.636	0.329	0.285	1.2e-34

TAIR|locus:2036396 AT1G50970 "AT1G50970" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 8.1e-108, Sum P(2) = 8.1e-108
 Identities = 190/275 (69%), Positives = 217/275 (78%)

Query:     2 YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASK 61
             +KI+EIK+KAEQ+E MVQ+IC DIKKLDFAKK+ITT +TAL RLTMLVSAV+QLQVM SK
Sbjct:    71 HKIQEIKSKAEQTEAMVQDICSDIKKLDFAKKNITTAVTALSRLTMLVSAVQQLQVMTSK 130

Query:    62 RQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKET 121
             RQYKEAA QLEA+N+LC+HF+AY D+PKI ELREK KNIKQILK HVFSDFSSLGTG ET
Sbjct:   131 RQYKEAATQLEAINELCNHFKAYMDLPKIMELREKLKNIKQILKFHVFSDFSSLGTGTET 190

Query:   122 EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAW 181
             EE  LL++LSD+CLVVDALEPSVREEL+NNFC RELTSYEQI+ GAEL  LD+ E  Y  
Sbjct:   191 EELFLLKKLSDSCLVVDALEPSVREELINNFCSRELTSYEQIYVGAELKTLDEIELIYNQ 250

Query:   182 IKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRT 241
             +   IR N+  + IFP SWHVPY L IQ  +KTR Q+E IL NL E+ DV  LLL L+RT
Sbjct:   251 LSCLIRKNQGKWTIFPASWHVPYRLCIQLSRKTRVQVESILVNLKEKSDVEKLLLELKRT 310

Query:   242 IEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQ 276
             +EFE EL  KFGG      IG DI  IG   NN Q
Sbjct:   311 LEFERELEMKFGG---GGSIGDDI--IGGGGNNSQ 340

GO:0005215 "transporter activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006810 "transport" evidence=ISS

UNIPROTKB|F1RHI3 VPS53 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 567 (204.7 bits), Expect = 1.5e-56, Sum P(2) = 1.5e-56
 Identities = 130/353 (36%), Positives = 205/353 (58%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct:   110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
             QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +DF     S GT 
Sbjct:   170 QYGEVANLLQGVMNVLEHFHRYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query:   119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
             +    +N+L+   DACL+ + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct:   230 RPGGPSNVLR---DACLIANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query:   178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
             RYAWIKR++   EE + ++FP  W++   + ++FC  TR +L  I+    +  +V  LL 
Sbjct:   287 RYAWIKRQLVDYEEKYGRMFPREWYMAERIAVEFCHITRTELAKIMRTRAKEIEVKLLLF 346

Query:   237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
             A+QRT  FE  LA++F G + +   G   +    P +    + D       +LA  +G+S
Sbjct:   347 AIQRTTNFEGFLAKRFSGCTLTD--GTLKKPESPPASTNPFLEDEAAPEMEELAMEKGDS 404

Query:   297 TEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
              + K        P A  N F  I+S CFEPHL  Y+E +++ L E +++ V +
Sbjct:   405 EQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVAD 450

GO:0000938 "GARP complex" evidence=IEA

UNIPROTKB|Q5VIR6 VPS53 "Vacuolar protein sorting-associated protein 53 homolog" [Homo sapiens (taxid:9606)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 130/353 (36%), Positives = 203/353 (57%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct:   110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
             QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +DF     S GT 
Sbjct:   170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query:   119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
             +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct:   230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query:   178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
             RYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL 
Sbjct:   287 RYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLF 346

Query:   237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
             A+QRT  FE  LA++F G + +      +E    P +    + D       +LA  +G+ 
Sbjct:   347 AIQRTTNFEGFLAKRFSGCTLTDGTLKKLES--PPPSTNPFLEDEPTPEMEELATEKGDL 404

Query:   297 TEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
              + K        P A  N F  I+S CFEPHL  Y+E +++ L E +++ V +
Sbjct:   405 DQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVAD 450

GO:0015031 "protein transport" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000938 "GARP complex" evidence=IDA

MGI|MGI:1915549 Vps53 "vacuolar protein sorting 53 (yeast)" [Mus musculus (taxid:10090)]

 Score = 562 (202.9 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 129/353 (36%), Positives = 203/353 (57%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct:   110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
             QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +DF     S GT 
Sbjct:   170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query:   119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
             +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct:   230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query:   178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
             RYAW+KR++   EE + ++FP  W +   ++++FC  TR +L  I+    +  +V  LL 
Sbjct:   287 RYAWVKRQLVDYEEKYGRMFPREWCMTERISVEFCHVTRAELSKIMRARAKEIEVKLLLF 346

Query:   237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
             A+QRT  FE  LA++F G + +      +E    P +    + D       +LA  +G  
Sbjct:   347 AIQRTTNFEGFLAKRFSGCTLTDGTLKKLES--PPPSTNPFLEDETTPEMEELALEKGEL 404

Query:   297 TEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
              + K        P A  N F  I+S CFEPHL  Y+E +++ L E +++ V +
Sbjct:   405 EQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLSELIDRFVAD 450

GO:0000938 "GARP complex" evidence=ISO

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E2R1D2 VPS53 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 558 (201.5 bits), Expect = 1.2e-53, P = 1.2e-53
 Identities = 131/353 (37%), Positives = 204/353 (57%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct:   110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
             QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +DF     S GT 
Sbjct:   170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query:   119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
             +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct:   230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query:   178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
             RYAWIKR++   EE + ++FP  W++   + ++FC  TR +L  I+    +  +V  LL 
Sbjct:   287 RYAWIKRQLVDYEEKYGRMFPREWYMTERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLF 346

Query:   237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
             A+QRT  FE  LA++F G + +    L   E   P  N     +   + E +L   +G+ 
Sbjct:   347 AIQRTTNFEGFLAKRFSGCTLTDGT-LKKLECPPPSTNPFLEDEPAPEME-ELTMEKGDL 404

Query:   297 TEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
              + K        P A  N F  I+S CFEPHL  Y+E +++ L E +++ V +
Sbjct:   405 DQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVAD 450

GO:0000938 "GARP complex" evidence=IEA

UNIPROTKB|E1BJW7 VPS53 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 557 (201.1 bits), Expect = 1.6e-53, P = 1.6e-53
 Identities = 129/353 (36%), Positives = 203/353 (57%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct:   110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
             QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +DF     S GT 
Sbjct:   170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query:   119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
             +    +N+L+   DAC V + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct:   230 RPGGPSNVLR---DACQVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query:   178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
             RYAWIKR++   EE + ++FP  W++   + ++FC  TR +L  I+    +  +V  LL 
Sbjct:   287 RYAWIKRQLVDYEEKYGRMFPREWYMAERIAVEFCHITRTELAKIMRTRAKEIEVKLLLF 346

Query:   237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
             A+QRT  FE  LA++F G + +      +E    P +    + D       +LA  +G+ 
Sbjct:   347 AIQRTTNFEGFLAKRFSGCTLTDGTLKKLES--PPASTNPFLEDEPAAEMEELAMEKGDL 404

Query:   297 TEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
              + K        P A  N F  I+S CFEPHL  Y+E +++ L E +++ V +
Sbjct:   405 EQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVAD 450

GO:0000938 "GARP complex" evidence=IEA

ZFIN|ZDB-GENE-041114-199 vps53 "vacuolar protein sorting 53 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 554 (200.1 bits), Expect = 3.5e-53, P = 3.5e-53
 Identities = 128/351 (36%), Positives = 202/351 (57%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  KR
Sbjct:   110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRKR 169

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETE 122
             QY E A  L+ V  +  HF+ Y  IP+I +L E+ K  +  L + + +DF      + ++
Sbjct:   170 QYGEVANLLQGVVNVLEHFQKYMGIPQIRQLSERVKAAQSELGTQILADFEETFPAQGSK 229

Query:   123 ETNLLQ-QLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYA 180
             ++      L DACLV + L+P +++E++  F R+ L+ Y  +F E  ++A LDK +RRYA
Sbjct:   230 KSGGPSIVLRDACLVANVLDPRIKQEIIKKFIRQHLSEYMVLFQENQDVAWLDKIDRRYA 289

Query:   181 WIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQ 239
             WIKR++   EE + ++FP  W +   + ++FC  TR +L  ++       +V  LL A+Q
Sbjct:   290 WIKRQLVDYEEKYGRMFPEEWCMTERIAVEFCHITRTELTKLMRTRAREIEVKLLLFAIQ 349

Query:   240 RTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEE 299
             RT  FE  LA++F G + +   G       +PE   +  +   +       + + N   E
Sbjct:   350 RTTNFEGLLAKRFSGCTLNDGPGQK-----KPETPLEPTNPFLED-----ESGEDN-VSE 398

Query:   300 KDGNKDL-SVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
             KD + D    P A  N F  I+S CFEPHL  Y+E +++ L E +++ V +
Sbjct:   399 KDEDLDRPKKPKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVAD 449

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5ZLD7 VPS53 "Vacuolar protein sorting-associated protein 53 homolog" [Gallus gallus (taxid:9031)]

 Score = 552 (199.4 bits), Expect = 5.8e-53, P = 5.8e-53
 Identities = 127/352 (36%), Positives = 202/352 (57%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct:   109 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 168

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
             QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +DF     S GT 
Sbjct:   169 QYGEVANLLQGVVNVLEHFNKYMGIPQIRQLSERVKAAQNELGQQILADFEEAFPSQGTK 228

Query:   119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
             +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct:   229 RPGGPSNVLR---DACLVANVLDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 285

Query:   178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
             RYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL 
Sbjct:   286 RYAWIKRQLVDYEEKYGRMFPQEWCMTERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLF 345

Query:   237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
             A+QRT  FE  LA++F G + +   G   +    P +    + D       ++   + ++
Sbjct:   346 AIQRTTNFEGLLAKRFSGCTLAD--GTVKKPEAPPPSTNPFLEDETGTETDEIVIEKSDA 403

Query:   297 TEEKDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
                 D  K   VP   F+   I+S CFEPHL  Y+E +++ L E +++ V +
Sbjct:   404 ----DKPKKPKVPDNPFH--GIVSKCFEPHLYVYIESQDKNLSELIDRFVAD 449

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

DICTYBASE|DDB_G0285901 DDB_G0285901 "Vps53-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 469 (170.2 bits), Expect = 8.9e-44, P = 8.9e-44
 Identities = 118/359 (32%), Positives = 187/359 (52%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI +IK+KA QSE MV EIC+DIK LD+AKK++TT IT L RL M+V  VEQL+ M  K+
Sbjct:   111 KITDIKSKANQSEQMVTEICKDIKSLDYAKKNLTTAITTLKRLHMMVMGVEQLKEMVDKK 170

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETE 122
             QY   A  LEA  Q    F+ YR+ PKI  L ++  NI+  +K  ++ DF+        +
Sbjct:   171 QYGTVAKLLEATAQFAEGFKDYRESPKIYALNKELDNIRSRVKDQIYEDFNQYVPYTSNQ 230

Query:   123 -ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEG-AELAKLDKTERRYA 180
              + N   +   +C V+DAL   V+++ +  FC  +L+SY++ F   +E   LD T+RR+ 
Sbjct:   231 IKPNEENRWKSSCYVIDALGSEVKKDFLRWFCGSQLSSYKKAFGSQSESYTLDSTDRRFG 290

Query:   181 WIKRRIRT-NEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQ 239
             W  R+I+   EE   +FPP W +   ++ +FC  TR  L  +L       +V  L+ AL+
Sbjct:   291 WWSRQIKIFREEYALVFPPEWCMEEQISYEFCILTRLDLSEVLLINKNSIEVPQLIKALK 350

Query:   240 RTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEE 299
             +T+ FE++L E F  +++             P N  +N SD   + +    ++  N   +
Sbjct:   351 KTLTFENKLYELFAQNNQKLS---SPTMSSTPSNESENNSDDSDQDD----SDDDNGENQ 403

Query:   300 KDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQ 358
              DG  + +    G N    I   +E  +    + EE  L +   +  Q++  D+ +  Q
Sbjct:   404 VDGENNSNNNNKG-NSEDAIRRRWEARVEKDRKREEEKLQQQQLQQQQQQGKDVNKQQQ 461

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC3A12.15 vps53 "GARP complex subunit Vps53 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 346 (126.9 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
 Identities = 74/259 (28%), Positives = 143/259 (55%)

Query:     1 MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
             + ++  +++ AE +++ + ++  +IK LDFAK+++ T++T L RL MLV+A E+L+ +  
Sbjct:    85 LQELSTLQSVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKLRTLRQ 144

Query:    61 KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
              +++ EA + ++A  QL + F+ YR + +I  L       ++     VF  F S    KE
Sbjct:   145 NQKFGEAISLMQATLQLLNFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFK-KE 203

Query:   121 TE-----ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDK 174
             +        + +Q L++ C  +D       E ++  +CR +L  + ++F E  E   L+ 
Sbjct:   204 SGMRGGFSPSSVQYLNELCRFIDIFAGDPPESVIRWYCRHQLEDFMKVFRENEEAGSLEN 263

Query:   175 TERRYAWIKRRIRTNEEIFK-IFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGT 233
               RRY W K+ ++T +++ K IFPP W V + L   FC++T+  L  +L +  +R  +  
Sbjct:   264 LPRRYTWFKKLLQTYDQLHKPIFPPHWKVDFRLYEVFCEETKNDLSKLLKD--DRLSLQV 321

Query:   234 LLLALQRTIEFEDELAEKF 252
              + +L++T+EFE  +  +F
Sbjct:   322 FVASLEQTLEFESFIDHRF 340

GO:0000938 "GARP complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006896 "Golgi to vacuole transport" evidence=ISO

GO:0010008 "endosome membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025233001	SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (826 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00035213001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (985 aa)					•		•		0.586
	GSVIVG00030154001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (709 aa)					•		•		0.522

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	391
pfam04100	375	pfam04100, Vps53_N, Vps53-like, N-terminal	1e-127

>gnl|CDD|217892 pfam04100, Vps53_N, Vps53-like, N-terminal

 Score =  369 bits (950), Expect = e-127
 Identities = 162/352 (46%), Positives = 200/352 (56%), Gaps = 51/352 (14%)

Query: 3   KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
           KI+EIK+KAE +E MV+EI RDIK+LDFAKK++TT+IT LHRL MLV+ VE L  +  KR
Sbjct: 72  KIKEIKSKAESTEEMVKEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALIQKR 131

Query: 63  QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSL-GTGKET 121
            Y EAA+ L+A+ QL +HF  Y+ + +I  L E    +K  L S +F DF S  G+  E 
Sbjct: 132 SYGEAASPLQAILQLLNHFIKYKSVDEIANLSESISKLKGSLLSQIFQDFKSAFGSQGEH 191

Query: 122 EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYA 180
               LLQ+LSDACLV DAL+PSVREEL+  FC ++L  YEQIF E  E A LDK +RRYA
Sbjct: 192 RTGLLLQKLSDACLVADALDPSVREELIKWFCSQQLEEYEQIFRENEEAAWLDKIDRRYA 251

Query: 181 WIKRRIRTNEEIFK-IFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQ 239
           W KR +R  EE +  IFP  WHV   L ++FC  TRKQL  IL    +  DV  LL ALQ
Sbjct: 252 WFKRLLRDFEEKYGPIFPADWHVAERLTVEFCHVTRKQLAKILVRRDKELDVKLLLFALQ 311

Query: 240 RTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEE 299
            T+EFE  L ++F   S                         +K  E K           
Sbjct: 312 STLEFEKFLDKRFSNTS-------------------------KKTPEPK----------- 335

Query: 300 KDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETW 351
                          F   ISSCFEPHLT Y+E +E+ L E LEK V EE W
Sbjct: 336 ------------ELAFHGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKW 375

Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events. Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
KOG2180	793	consensus Late Golgi protein sorting complex, subu	100.0
PF04100	383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	100.0
PF10191	766	COG7: Golgi complex component 7 (COG7); InterPro:	97.6
PF07393	710	Sec10: Exocyst complex component Sec10; InterPro:	97.54
PF10475	291	DUF2450: Protein of unknown function N-terminal do	97.45
PF06248	593	Zw10: Centromere/kinetochore Zw10; InterPro: IPR00	96.74
PF15469	182	Sec5: Exocyst complex component Sec5	95.35
PF05664	677	DUF810: Protein of unknown function (DUF810); Inte	91.17
KOG2115	951	consensus Vacuolar sorting protein VPS45 [Intracel	89.96
PF04437	494	RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00	87.96
KOG0412	773	consensus Golgi transport complex COD1 protein [In	85.45
KOG2176	800	consensus Exocyst complex, subunit SEC15 [Intracel	83.48

>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-100  Score=793.52  Aligned_cols=344  Identities=52%  Similarity=0.802  Sum_probs=316.3

Q ss_pred             CcchHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhh
Q 016342            1 MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSH   80 (391)
Q Consensus         1 ~~~I~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~   80 (391)
                      +++|++||++|++||.||++||+|||+||+||||||+|||+|+||||||+||++|+.++.+|+|+|+|++|+||++|++|
T Consensus        85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~  164 (793)
T KOG2180|consen   85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNH  164 (793)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCc-hhhhhhHhHhhhhHHHHhcChhHHHHHHHHHHHHhHHH
Q 016342           81 FEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKET-EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTS  159 (391)
Q Consensus        81 F~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~-~~~~~~~~L~~aC~vvD~L~~~~k~~li~wf~~~~L~e  159 (391)
                      |++|++||+|++|++.++.+|..|..||+.||+++|+|+++ ..+...+.|.|||+|+|+|+|++|+++|+|||.+||.+
T Consensus       165 F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIkwf~~qqL~e  244 (793)
T KOG2180|consen  165 FIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELIKWFCSQQLEE  244 (793)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998877 33445688999999999999999999999999999999


Q ss_pred             HHHhcCC-cccccccchhhhHHHHHHhhhhhhhhc-CcCCCCccccHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 016342          160 YEQIFEG-AELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLA  237 (391)
Q Consensus       160 Y~~iF~~-~E~~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~a  237 (391)
                      |.+||++ .|+||||||+|||+||||.|++|+++| .|||++|+|++|||.+||..||+||..||.++++++||++||.|
T Consensus       245 y~~IF~en~E~a~LDkidrRY~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~~~~~~~v~lll~A  324 (793)
T KOG2180|consen  245 YEQIFRENEEAASLDKLDRRYAWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKRRKKEPDVKLLLFA  324 (793)
T ss_pred             HHHHHhccHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHhhhCccHHHHHHH
Confidence            9999995 799999999999999999999999999 69999999999999999999999999999988899999999999


Q ss_pred             HHHhHHHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhccCCCcccccCCCCCCCCCCCccccc
Q 016342          238 LQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFNFRR  317 (391)
Q Consensus       238 Lq~T~~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~F~g  317 (391)
                      ||+|++||++|++||+|++....          +..++.                              -.|...++|+|
T Consensus       325 lq~TleFE~~L~kRF~g~~~~~~----------~~~ns~------------------------------~~~k~~~~f~~  364 (793)
T KOG2180|consen  325 LQSTLEFEKFLDKRFSGGTLTGK----------PEKNSQ------------------------------FEPKERFNFEG  364 (793)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCC----------Cccccc------------------------------cccccccchhh
Confidence            99999999999999998755411          111111                              00112368999


Q ss_pred             ccccccchhhhHHHHHHHHHHHHHHHHHhhcccccc----ccCCCCccccChHHHHHHHHHHHHHHHHhcc
Q 016342          318 IISSCFEPHLTAYVELEERTLMENLEKLVQEETWDI----EEGSQNNVLHSSTEVSIRTYIMILIILHVMC  384 (391)
Q Consensus       318 ~IS~cFEpyL~~yI~~qdk~L~e~l~~~i~e~~~~~----~~~~~~~Vl~Ss~dLF~~~~~~~~~~~~~~~  384 (391)
                      +||+||||||.+||++||++|+++|++|+++++|+.    +.+..+.|+|||+|||+.+.+.++|+.++.-
T Consensus       365 ~isScFEPhLtlyI~~qek~l~ellek~v~e~~~~~~p~~~~~~~s~vlpSsadlF~~Ykkcltq~~~Ls~  435 (793)
T KOG2180|consen  365 AISSCFEPHLTLYIESQEKELSELLEKFVSEEKWDGEPKSNTDEESLVLPSSADLFVAYKKCLTQCSELSE  435 (793)
T ss_pred             HHHHhcccchhhhhhHHHHHHHHHHHHHHhhhccCCCCCCCcccccccCccHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999973    3356799999999999888899999998753

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=100.00  E-value=1.1e-96  Score=745.43  Aligned_cols=310  Identities=52%  Similarity=0.842  Sum_probs=282.0

Q ss_pred             cchHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhc
Q 016342            2 YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF   81 (391)
Q Consensus         2 ~~I~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F   81 (391)
                      ++|.+||++|++||+||++||+|||+||+||||||.|||+||||||||+||++|+.++++|+|+|||++|+||++|++||
T Consensus        71 ~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F  150 (383)
T PF04100_consen   71 EKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHF  150 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchhh-hhhHhHhhhhHHHHhcChhHHHHHHHHHHHHhHHHH
Q 016342           82 EAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEET-NLLQQLSDACLVVDALEPSVREELVNNFCRRELTSY  160 (391)
Q Consensus        82 ~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~-~~~~~L~~aC~vvD~L~~~~k~~li~wf~~~~L~eY  160 (391)
                      ++|++||+|++|++++..|++.|+.||+.||+.++++.+..++ ....+|.+||.|||+||+++|++||+|||++||++|
T Consensus       151 ~~yksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~qL~eY  230 (383)
T PF04100_consen  151 KPYKSIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQLKEY  230 (383)
T ss_pred             HcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998743333222 245789999999999999999999999999999999


Q ss_pred             HHhcC-CcccccccchhhhHHHHHHhhhhhhhhc-CcCCCCccccHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 016342          161 EQIFE-GAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLAL  238 (391)
Q Consensus       161 ~~iF~-~~E~~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aL  238 (391)
                      +++|+ ++|+||||||+|||+||||+|++|++.+ .+||++|+||++||.+||.+||+||..+|++.++++||++||+||
T Consensus       231 ~~iF~~~~e~~~Ld~i~RRy~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aL  310 (383)
T PF04100_consen  231 RRIFRENDEAASLDNIDRRYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKRKSELDVKLLLKAL  310 (383)
T ss_pred             HHHHcccccccchhhHHHHHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Confidence            99998 6799999999999999999999999986 899999999999999999999999999999889999999999999


Q ss_pred             HHhHHHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhccCCCcccccCCCCCCCCCCCcccccc
Q 016342          239 QRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFNFRRI  318 (391)
Q Consensus       239 q~T~~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~F~g~  318 (391)
                      |+|++||++|++||+|.+...+   ..                +..                   .  .......+|+|+
T Consensus       311 q~T~~FE~~L~~rF~~~~~~~~---~~----------------~~~-------------------~--e~~~~~~~f~g~  350 (383)
T PF04100_consen  311 QKTLEFEKELAKRFAGSTDESQ---EI----------------EKK-------------------K--EMKEIAENFKGI  350 (383)
T ss_pred             HHHHHHHHHHHHHhcccccccc---cc----------------ccc-------------------c--cccccccccccc
Confidence            9999999999999987633200   00                000                   0  000012379999


Q ss_pred             cccccchhhhHHHHHHHHHHHHHHHHHhhcccc
Q 016342          319 ISSCFEPHLTAYVELEERTLMENLEKLVQEETW  351 (391)
Q Consensus       319 IS~cFEpyL~~yI~~qdk~L~e~l~~~i~e~~~  351 (391)
                      ||+||||||++||++|||+|+++|++|+++++|
T Consensus       351 IS~~FepyL~iyv~~qdk~L~~~l~~~~~~~~w  383 (383)
T PF04100_consen  351 ISSCFEPYLSIYVDSQDKNLSEKLDKFISEEKW  383 (383)
T ss_pred             hHHhhHhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999998

>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []

Probab=97.60  E-value=0.019  Score=63.90  Aligned_cols=317  Identities=14%  Similarity=0.213  Sum_probs=198.0

Q ss_pred             chHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcc
Q 016342            3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFE   82 (391)
Q Consensus         3 ~I~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~   82 (391)
                      ++..|+++..+-|..-..--.-+.+||.+|.++..+-.+|+==.-..+...++..+....+|..+|.-|..|.+=+..| 
T Consensus        85 ~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l-  163 (766)
T PF10191_consen   85 QMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVL-  163 (766)
T ss_pred             HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-
Confidence            3445555544444322233345888999999999999999987777777778888999999999999999998888766 


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchhhhhhHhHhhhhHHHHhcChhHHHHHHHHHHHHhHHHHHH
Q 016342           83 AYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQ  162 (391)
Q Consensus        83 ~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~~~~k~~li~wf~~~~L~eY~~  162 (391)
                        .++|.-.+=...++.+++.|...+-...-..+....      ....+....|...+|..  ..+.++|++-.......
T Consensus       164 --~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~------~~~~~~~~~if~~i~R~--~~l~~~Y~~~r~~~l~~  233 (766)
T PF10191_consen  164 --QDVPDYEERRQQLEALKNRLEALVSPQLVQALNSRD------VDAAKEYVKIFSSIGRE--PQLEQYYCKCRKAPLQR  233 (766)
T ss_pred             --cCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcC------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHH
Confidence              467777776677777777776655443333332211      12233444556666532  34556666655555555


Q ss_pred             hcCC---cc--cccccchhhhHHHHHHhhhhh-hh-hc--CcCCCCcc-ccHHHHHHHHHHH---HHHHHHHHHhccCCC
Q 016342          163 IFEG---AE--LAKLDKTERRYAWIKRRIRTN-EE-IF--KIFPPSWH-VPYLLNIQFCKKT---RKQLEGILDNLTERP  229 (391)
Q Consensus       163 iF~~---~E--~~~Ldni~RRy~Wfkr~L~~~-e~-~~--~iFP~~W~-v~~~L~~~Fc~~T---r~dL~~iL~~~~~~~  229 (391)
                      ....   .+  ....+-+.   .|+-.+|... ++ .|  .+||..-. ++.-++..+..++   ...|...+.......
T Consensus       234 ~W~~~~~~~~~~~~~~~L~---~fyd~ll~~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~  310 (766)
T PF10191_consen  234 LWQEYCQSDQSQSFAEWLP---SFYDELLSLLHQELKWCSQVFPDESPVLPKLLAETLSALQPSFPSRLSSALKRAGPET  310 (766)
T ss_pred             HHHHHhhhccchhHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCccHHHHHHHHHhhcCchh
Confidence            5321   11  11111122   4555666663 33 46  69999876 4444556666655   445666665433333


Q ss_pred             CHHHHHHHHHHhHHHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhccCCCcccccCCCCCCCC
Q 016342          230 DVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVP  309 (391)
Q Consensus       230 dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~~~~~~~~~~~~k~~~~~  309 (391)
                      ....|+..-+.|..|=+.+...|......      .        +   ..    +.                        
T Consensus       311 ~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~------~--------~---l~----~~------------------------  345 (766)
T PF10191_consen  311 KLETLIELYQATEHFARNLEHLLSSLPGE------S--------N---LS----KV------------------------  345 (766)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccccc------c--------c---hH----HH------------------------
Confidence            47899999999999999999999764111      0        0   00    00                        


Q ss_pred             CCCcccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccccccCCCCccccChHHHHHHHHHHHHHHHHhc
Q 016342          310 GAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNNVLHSSTEVSIRTYIMILIILHVM  383 (391)
Q Consensus       310 ~~~~~F~g~IS~cFEpyL~~yI~~qdk~L~e~l~~~i~e~~~~~~~~~~~~Vl~Ss~dLF~~~~~~~~~~~~~~  383 (391)
                         ....+.|=.-|.||..-|=+.|.+.|...+..+..... +.. +.-..+-.|...+|.-...-+..|.++.
T Consensus       346 ---~~l~~al~~PF~~~q~~Yg~lE~~~L~~~L~~l~~~~~-~~~-d~v~~L~~s~~k~f~lae~Av~RC~~fT  414 (766)
T PF10191_consen  346 ---EELLQALFEPFKPYQQRYGELERRFLSAQLSALDLESA-ELS-DAVRRLEESIPKLFGLAEEAVDRCIAFT  414 (766)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-cHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence               01224566677788889999999999999886654321 110 1123445566777777777777777664

COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].

>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins []

Probab=97.54  E-value=0.016  Score=63.96  Aligned_cols=285  Identities=18%  Similarity=0.270  Sum_probs=187.7

Q ss_pred             hHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHh-h---cCHHHHHHHHHHHHHH
Q 016342            4 IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSA--VEQLQVMAS-K---RQYKEAAAQLEAVNQL   77 (391)
Q Consensus         4 I~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a--~~qL~~~~~-~---r~Y~e~a~lL~av~~L   77 (391)
                      .+.+-++-...-..|..|..-...++.-|.+-..++..++.++-+.+.  +..|..+.. -   .+-.++|..++-+..+
T Consensus         8 f~~Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~~~~~~~~~~A~il~~L~~l   87 (710)
T PF07393_consen    8 FQQLDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTFTDPEDPEEAAKILRNLLRL   87 (710)
T ss_pred             HHHHHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcccCccchHHHHHHHHHHHHH
Confidence            344555555566677777777888888889989999999999876664  457776632 2   2337888888766666


Q ss_pred             HhhcccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchhhhhhHhHhhhhHHHHhcChhHHHHHHHHHHHHhH
Q 016342           78 CSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRREL  157 (391)
Q Consensus        78 ~~~F~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~~~~k~~li~wf~~~~L  157 (391)
                      .   +...++|........+......+...+...|+.....+.      ...|+++-.|+-.++...  .+|+.|+++.-
T Consensus        88 s---~~~~~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d------~~~M~~~A~vL~~fngg~--~~i~~fi~k~~  156 (710)
T PF07393_consen   88 S---KELSDIPGFEEARENIEKYCEIFENALLREFEIAYREGD------YERMKEFAKVLLEFNGGS--SCIDFFINKHE  156 (710)
T ss_pred             H---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCc--HHHHHHHHhCh
Confidence            6   333388888899999999999999999999998764332      367888888888888766  68888888642


Q ss_pred             HHH--HH---------------hcCCc--ccccccchhhhHHHHHHhhhhhhhhc-CcCCCCccccHHHHHHHHHHHH-H
Q 016342          158 TSY--EQ---------------IFEGA--ELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTR-K  216 (391)
Q Consensus       158 ~eY--~~---------------iF~~~--E~~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr-~  216 (391)
                      --+  ..               +..++  .....+.++.=|..++..++.-...- .|||+.=.|=..++..++.--= .
T Consensus       157 ~f~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~  236 (710)
T PF07393_consen  157 FFIDEDQLDESNGFEDEEIWEKLSDPDSHPPINEESLDAFFEDIRDVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQE  236 (710)
T ss_pred             hhhhhhhhccccccchhHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence            222  11               11111  11223345555566666655544434 7999977777776666655433 3


Q ss_pred             HHHHHHHhccCCCCHHHHHHHHH----HhHHHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhc
Q 016342          217 QLEGILDNLTERPDVGTLLLALQ----RTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAAN  292 (391)
Q Consensus       217 dL~~iL~~~~~~~dv~~Ll~aLq----~T~~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~  292 (391)
                      -+..+|... ...+....+.+|+    .|..|=..|..-+.+....             +.++         +       
T Consensus       237 ~i~~lL~~a-~~~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~-------------~~~~---------~-------  286 (710)
T PF07393_consen  237 YIESLLEEA-SSISTLAYLRTLHGLYSQTKKLVDDLKEFFSGENPD-------------PDSS---------D-------  286 (710)
T ss_pred             HHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-------------ccch---------H-------
Confidence            356666543 3457777777776    4555555554443221000             0000         0       


Q ss_pred             cCCCcccccCCCCCCCCCCCcccccccccccchhh--hHHHHHHHHHHHHHHHHHhhc
Q 016342          293 QGNSTEEKDGNKDLSVPGAGFNFRRIISSCFEPHL--TAYVELEERTLMENLEKLVQE  348 (391)
Q Consensus       293 ~~~~~~~~~~~k~~~~~~~~~~F~g~IS~cFEpyL--~~yI~~qdk~L~e~l~~~i~e  348 (391)
                                         .......+-++|+|||  ..|++.|-+.|.+.+...++.
T Consensus       287 -------------------~~~l~~~~~~lF~~~l~~~~Yl~~E~~~l~~~~~~~l~~  325 (710)
T PF07393_consen  287 -------------------SAFLDQLVESLFEPYLEDDEYLEEEKRSLKELLESILSR  325 (710)
T ss_pred             -------------------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence                               1124568999999999  999999999999998877754

; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm

>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known

Probab=97.45  E-value=0.0086  Score=59.07  Aligned_cols=152  Identities=14%  Similarity=0.279  Sum_probs=108.2

Q ss_pred             cchHHHHHHHHHhHHHHHHHHHhhhh--------------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 016342            2 YKIREIKNKAEQSETMVQEICRDIKK--------------LDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEA   67 (391)
Q Consensus         2 ~~I~~Ik~kA~~SE~~V~eit~dIk~--------------LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~   67 (391)
                      +.|.+|++....+=..|+++=+.++.              +..-|+||......|+.+..+..+...++.++...+|..+
T Consensus        67 ~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~A  146 (291)
T PF10475_consen   67 SSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGA  146 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            35566666666666655555444443              3444677777888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchhhhhhHhHhhhhHHHHhcChhHHHH
Q 016342           68 AAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREE  147 (391)
Q Consensus        68 a~lL~av~~L~~~F~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~~~~k~~  147 (391)
                      ..++....++++   .|+.+.-++.|..++..+...+..++-.+|...-.   .-++.....+-+|...++- -..+.++
T Consensus       147 l~li~~~~~~l~---~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~lLgk-~~~~~dk  219 (291)
T PF10475_consen  147 LDLIEECQQLLE---ELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQLLGK-TQSAMDK  219 (291)
T ss_pred             HHHHHHHHHHHH---hcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhh-hHHHHHH
Confidence            999999999995   46666777788888888888777777777765421   1123345677788877663 2457777


Q ss_pred             HHHHHHHHhHHHH
Q 016342          148 LVNNFCRRELTSY  160 (391)
Q Consensus       148 li~wf~~~~L~eY  160 (391)
                      +...|++-....-
T Consensus       220 l~~~f~~~i~~~~  232 (291)
T PF10475_consen  220 LQMHFTSAIHSTT  232 (291)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777766544433

>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells

Probab=96.74  E-value=1.1  Score=48.58  Aligned_cols=217  Identities=16%  Similarity=0.223  Sum_probs=138.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhc--ccCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 016342           33 KHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF--EAYRDIPKITELREKFKNIKQILKSHVFS  110 (391)
Q Consensus        33 kNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F--~~Yksi~~I~~L~~~~~~i~~~L~~qI~~  110 (391)
                      +..+..+.+|++|+-+-.++++.+.....++|-++|..|..+..++..-  ..+.+..-+..|..++...++.|..++-+
T Consensus        93 ~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~  172 (593)
T PF06248_consen   93 EENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSE  172 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677788899999999999999999999999999999999999876  34556667788899999999999999888


Q ss_pred             hccccCC----CC------C-c--------hhhhh--hHhHhhhhHHHHhcChh---HHHHHHHHHHHHhHH-HHHHhcC
Q 016342          111 DFSSLGT----GK------E-T--------EETNL--LQQLSDACLVVDALEPS---VREELVNNFCRRELT-SYEQIFE  165 (391)
Q Consensus       111 DF~~~~~----~~------~-~--------~~~~~--~~~L~~aC~vvD~L~~~---~k~~li~wf~~~~L~-eY~~iF~  165 (391)
                      .|+....    +.      . .        ..+..  ....-.|..+++.|+..   +.+.|++.++.-.+. +....+.
T Consensus       173 ~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii~PlI~~p~~~~~~  252 (593)
T PF06248_consen  173 EWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLLEHIIKPLISHPSSIVSV  252 (593)
T ss_pred             HHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence            8875421    01      0 0        00111  23444666666666653   334444444433332 1111111


Q ss_pred             C-ccc-c--------------cccchhhhHHHHHHhhhhhhhhcCcCCCCccccHHHHHHHHHHHHHHHHHHH-Hhc-cC
Q 016342          166 G-AEL-A--------------KLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGIL-DNL-TE  227 (391)
Q Consensus       166 ~-~E~-~--------------~Ldni~RRy~Wfkr~L~~~e~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL-~~~-~~  227 (391)
                      . .+. +              .--+.+--|.=++.++....++...-|..|.   .|...|-.....+|...| ... ..
T Consensus       253 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~~---~l~~~~g~~i~~~ls~~lI~~~L~~  329 (593)
T PF06248_consen  253 EESEDGSVEITLSYEPDSSKDKRPSPKEVFSNLLLVFEFLHQHLLSLPSSDS---SLSESFGDHIWPRLSELLISNCLSP  329 (593)
T ss_pred             cccCCCcceEEEEeecccccccCCCHHHHHHHHHHHHHHHHHHhcccCCchh---HHHHHHHHHHHHHHHHHHHHhhCcC
Confidence            1 111 1              1113445576676666665554433466676   788888888888886555 322 21


Q ss_pred             --CCC---HHHHHHHHHHhHHHHHHHHHHh
Q 016342          228 --RPD---VGTLLLALQRTIEFEDELAEKF  252 (391)
Q Consensus       228 --~~d---v~~Ll~aLq~T~~FE~~L~~rF  252 (391)
                        +-+   ...+-..+..|.+||..|..-.
T Consensus       330 aiP~~~~~l~~f~~v~~~~~~Fe~~L~~lg  359 (593)
T PF06248_consen  330 AIPTSASELQEFEEVLESVEEFEEALKELG  359 (593)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence              112   3456778899999999998653

These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus

>PF15469 Sec5: Exocyst complex component Sec5

Probab=95.35  E-value=0.95  Score=41.29  Aligned_cols=108  Identities=12%  Similarity=0.279  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcccC
Q 016342            5 REIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAY   84 (391)
Q Consensus         5 ~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Y   84 (391)
                      ..+.+...++...-..+-+.|-.--.--.++-.++..|+|.+-|.+.=.+|+..+.++.|..++.-+.-++.+.   +.|
T Consensus        43 ~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~---~~~  119 (182)
T PF15469_consen   43 EKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLF---EKY  119 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHH---HHh
Confidence            33444444444444444444444444446888999999999999999999999999999999999998777776   677


Q ss_pred             C-CchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 016342           85 R-DIPKITELREKFKNIKQILKSHVFSDFSSL  115 (391)
Q Consensus        85 k-si~~I~~L~~~~~~i~~~L~~qI~~DF~~~  115 (391)
                      + .++-+..++.+++.+-..++.++...+...
T Consensus       120 ~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~  151 (182)
T PF15469_consen  120 KQQVPVFQKVWSEVEKIIEEFREKLWEKLLSP  151 (182)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6 899999999999999999999888866553

>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function

Probab=91.17  E-value=29  Score=38.65  Aligned_cols=164  Identities=16%  Similarity=0.190  Sum_probs=112.2

Q ss_pred             ccccchhhhHHHHHHhhhh-h--h-hhc-CcCCCCccccHH--HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhH
Q 016342          170 AKLDKTERRYAWIKRRIRT-N--E-EIF-KIFPPSWHVPYL--LNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTI  242 (391)
Q Consensus       170 ~~Ldni~RRy~Wfkr~L~~-~--e-~~~-~iFP~~W~v~~~--L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~  242 (391)
                      ..-++.....+=+-+-+.. .  | +.| .+| ..|+=.-.  -+..+...=-.+|...|... ..++.+++ ..|+..-
T Consensus       407 ~~~~~~~~~L~~LA~ei~~la~~e~~~FsPiL-k~whP~a~~VAa~~LH~~Yg~~Lk~~L~~~-~~LT~d~v-~VL~aA~  483 (677)
T PF05664_consen  407 RSDSEPSHVLAQLAKEIKELAKKEKEVFSPIL-KRWHPNAAGVAAATLHSCYGNELKQFLSGV-THLTPDVV-EVLQAAD  483 (677)
T ss_pred             cccccchHHHHHHHHHHHHHHHHhHHhcCchh-cccCchHHHHHHHHHHHHHHHHHHHHHccc-ccCCHHHH-HHHHHHH
Confidence            3455666666777666664 2  2 235 565 56664433  33556666677888888743 34555544 8999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhccCCCcccccCCCCCCCCCCCcccccccccc
Q 016342          243 EFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFNFRRIISSC  322 (391)
Q Consensus       243 ~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~F~g~IS~c  322 (391)
                      .||+.|...-+-.       .  +++                                  ++  +....-+||  -|-+.
T Consensus       484 ~LEk~Lvq~~~~~-------~--edg----------------------------------gk--~~~rem~Py--~vE~~  516 (677)
T PF05664_consen  484 KLEKALVQMVSVD-------C--EDG----------------------------------GK--SLIREMPPY--EVESL  516 (677)
T ss_pred             HHHHHHHHHHHhh-------c--ccc----------------------------------cc--ccccCCCce--eHHHH
Confidence            9999999775211       0  000                                  01  011112344  36778


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHhhccccccccCCCCccccChHHHHHHHHHHHHHHHHhcc
Q 016342          323 FEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNNVLHSSTEVSIRTYIMILIILHVMC  384 (391)
Q Consensus       323 FEpyL~~yI~~qdk~L~e~l~~~i~e~~~~~~~~~~~~Vl~Ss~dLF~~~~~~~~~~~~~~~  384 (391)
                      +.+++.-||+.+.+.+.+-+++.++.++|.+... .-.--||..|+|--+..++-+..+++.
T Consensus       517 i~~lv~~Wi~~~~~~l~ewv~ra~~qE~W~P~S~-~e~hs~SvVEvfri~~eTvd~ff~L~~  577 (677)
T PF05664_consen  517 ISNLVKRWIQEQLERLNEWVDRAIKQEKWNPRSK-EERHSPSVVEVFRIFNETVDQFFQLPW  577 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCC-CCCCcchHHHHHHHHHHHHHHHHcCCC
Confidence            8899999999999999999999999999977643 356678999999889999999988764

>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.96  E-value=10  Score=42.98  Aligned_cols=113  Identities=14%  Similarity=0.331  Sum_probs=92.2

Q ss_pred             chHHHHHHHHHhHHHHHHHHHhhhhHh--------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 016342            3 KIREIKNKAEQSETMVQEICRDIKKLD--------------FAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAA   68 (391)
Q Consensus         3 ~I~~Ik~kA~~SE~~V~eit~dIk~LD--------------~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a   68 (391)
                      ..++|++++.++=+-|+++-..|+.+|              .+.+|++..-.-|+=+.-+-.+...++.++....|-+|.
T Consensus       276 ~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll~~~d~~~AL  355 (951)
T KOG2115|consen  276 SLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLLSTQDFVGAL  355 (951)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccHHHHH
Confidence            456788888888888888888777776              456677776666666677778888999999999999999


Q ss_pred             HHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 016342           69 AQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLG  116 (391)
Q Consensus        69 ~lL~av~~L~~~F~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~  116 (391)
                      ++..-+.+++.- ...-+|+.+..|...+..+...+-..+..+|..+.
T Consensus       356 dlI~t~q~~L~g-~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~~~  402 (951)
T KOG2115|consen  356 DLIKTIQELLKG-SELLGLHSFRHLRSQLLELYKTIDKMLTREFSTYS  402 (951)
T ss_pred             HHHHHHHHHHhh-hhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998855 56778999999999988888888887888887653

>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases

Probab=87.96  E-value=12  Score=39.65  Aligned_cols=161  Identities=16%  Similarity=0.271  Sum_probs=89.0

Q ss_pred             HHHhHHHHHHhc----CCc-ccccccchhhhHHHHHHhhhhhhh----hc-CcCCC----CccccHHHHHHHHHHHHHHH
Q 016342          153 CRRELTSYEQIF----EGA-ELAKLDKTERRYAWIKRRIRTNEE----IF-KIFPP----SWHVPYLLNIQFCKKTRKQL  218 (391)
Q Consensus       153 ~~~~L~eY~~iF----~~~-E~~~Ldni~RRy~Wfkr~L~~~e~----~~-~iFP~----~W~v~~~L~~~Fc~~Tr~dL  218 (391)
                      ++-.+.++..-|    .|+ +..++|+.+==|+|+.+.+.+|..    .. .++-+    +..+...+...-...-|+-|
T Consensus         3 ~~~l~~p~~~rF~yHF~~~r~Tn~~~kPEw~f~~i~~~~~~~~~~l~~~iq~~~~~~~~~~~~~~~~fi~~ll~~~~~Kl   82 (494)
T PF04437_consen    3 IDVLVNPFKKRFRYHFMGNRPTNRLDKPEWYFTFILKWIRDHRDFLEECIQPLLDENGLTYIDAREEFIRGLLPPVREKL   82 (494)
T ss_dssp             HHHHCHHHHHHHHHHT----S---CCCHHHHHHHHHHHHHHH---HHHHHHHH-BGGTB-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcCcccchHHHHHHHHHHHHHhhHHHHHHcCHHHHhcCCccccHHHHHHHHHHHHHHHHH
Confidence            333444444444    433 678999999778888888888743    22 34444    23444445555555555555


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHhHHHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhccCCCcc
Q 016342          219 EGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTE  298 (391)
Q Consensus       219 ~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~~~~~~~  298 (391)
                      ...|.  ...-+..+|...+..++.|++.|...|+-..                                          
T Consensus        83 ~~~l~--~~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~------------------------------------------  118 (494)
T PF04437_consen   83 RSDLP--ELLDDPSLLSHLIDEILSFDKELRSLYGYPG------------------------------------------  118 (494)
T ss_dssp             HHHH----TTS-HHHHHHHHHHHHHHHHHHHHTS---S------------------------------------------
T ss_pred             HHHHH--hhccChhHHHHHHHHHHHHHHHHHHHcCCCC------------------------------------------
Confidence            55553  1234678999999999999999999986430                                          


Q ss_pred             cccCCCCCCCCCCCccccccccccc--chhhhHHHHHHHHHHHHHHHHHhhccc-cccc-----cCCCCccccChHHHHH
Q 016342          299 EKDGNKDLSVPGAGFNFRRIISSCF--EPHLTAYVELEERTLMENLEKLVQEET-WDIE-----EGSQNNVLHSSTEVSI  370 (391)
Q Consensus       299 ~~~~~k~~~~~~~~~~F~g~IS~cF--EpyL~~yI~~qdk~L~e~l~~~i~e~~-~~~~-----~~~~~~Vl~Ss~dLF~  370 (391)
                                     ...|....+|  +.++..|++.|.+.=.+.++.++..+. |..+     .+.+..-.|-||+=|+
T Consensus       119 ---------------d~~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~~~~~~~k~t~~A~~~~  183 (494)
T PF04437_consen  119 ---------------DWQGSTLDVLCQPDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVEADSDELKPTKSAERFV  183 (494)
T ss_dssp             ---------------------CGGGS-HHHHHHHHHHHHHHHHHHHH---------------HTTSSGGGG-GGHHHHHH
T ss_pred             ---------------ccchhHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccccCCchhhcchHHHHHHH
Confidence                           0225556666  678999999999999999999887554 6443     1334455688888775


Q ss_pred             HH
Q 016342          371 RT  372 (391)
Q Consensus       371 ~~  372 (391)
                      ..
T Consensus       184 ~L  185 (494)
T PF04437_consen  184 KL  185 (494)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.

>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.45  E-value=42  Score=37.35  Aligned_cols=96  Identities=16%  Similarity=0.278  Sum_probs=74.1

Q ss_pred             HHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH------hhcccCCCchHHHH
Q 016342           19 QEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLC------SHFEAYRDIPKITE   92 (391)
Q Consensus        19 ~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~------~~F~~Yksi~~I~~   92 (391)
                      ..+..+|++||.||.=+-.++.--+-+.-|-++.+-+...+...+|..+|..+.-...+-      .+++.-....+|..
T Consensus       101 e~Vs~kVr~lDla~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~  180 (773)
T KOG0412|consen  101 ETVSGKVRALDLAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISD  180 (773)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhh
Confidence            455689999999999888888777778888899999999999999999999888765442      35666677777766


Q ss_pred             HHHHHHHHHHHHHHHHHhhccc
Q 016342           93 LREKFKNIKQILKSHVFSDFSS  114 (391)
Q Consensus        93 L~~~~~~i~~~L~~qI~~DF~~  114 (391)
                      =.+.+...+..|..-+.+.|..
T Consensus       181 ~~~~L~~a~e~L~~l~~~~f~e  202 (773)
T KOG0412|consen  181 PYETLKEAKERLSKLFKERFTE  202 (773)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777776655555543

>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.48  E-value=15  Score=41.16  Aligned_cols=68  Identities=21%  Similarity=0.217  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 016342            5 REIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLE   72 (391)
Q Consensus         5 ~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~   72 (391)
                      .+...+-.++-.-+.....|+.+.-.-+||+|.+|..++.=--....+..|+++++.|+|=-+-..+.
T Consensus        97 sd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle  164 (800)
T KOG2176|consen   97 SDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLE  164 (800)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            34444445555566667888999999999999999999997667788899999999999975544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	391
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 4e-11
 Identities = 72/399 (18%), Positives = 133/399 (33%), Gaps = 95/399 (23%)

Query: 9   NKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAA 68
           N  E    M+Q++   I     ++   ++ I    +L  + S   +L+ +   + Y+   
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----KLR-IHSIQAELRRLLKSKPYENCL 247

Query: 69  AQLEAVNQLCSHFEAYRDIP-KI---TELREKFKNIKQILKSHVFSDFSSLG-TGKETEE 123
             L  V      + A+ ++  KI   T  ++    +     +H+  D  S+  T  E + 
Sbjct: 248 LVLLNVQNA-KAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 124 TNLL--------QQL-SDAC----LVVDALEPSVREELV--NNFCRRELTSYEQIFEGAE 168
             LL        Q L  +        +  +  S+R+ L   +N+          I E + 
Sbjct: 306 --LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SS 362

Query: 169 LAKLDKTERR--YAWIKRRIRTNEEIFKIFPPSWHVPY-LLNIQFCKKTRKQLEGILDNL 225
           L  L+  E R  +           +   +FPPS H+P  LL++ +    +  +  +++ L
Sbjct: 363 LNVLEPAEYRKMF-----------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 226 TERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKY 285
            +                    L EK   +S  S   + +E   + EN       I   Y
Sbjct: 412 HKY------------------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 286 ERKLAANQGNSTEEKDGNKDLSVP---GAGFNFRRIISSCFEPHLTAYVELEERTLMENL 342
                    N  +  D + DL  P      ++    I      HL      E  TL   +
Sbjct: 454 ---------NIPKTFDSD-DLIPPYLDQYFYSH---IGH----HLKNIEHPERMTLFRMV 496

Query: 343 --------EKLVQEETWDIEEGSQNNVLHSSTEVSIRTY 373
                   +K+  + T     GS  N L       ++ Y
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQ-----QLKFY 530

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 5e-08
 Identities = 44/338 (13%), Positives = 96/338 (28%), Gaps = 97/338 (28%)

Query: 80  HFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDA 139
           H   + D  +  E + ++K+I  + +     +F      K+ ++      LS     +D 
Sbjct: 2   HHHHHMDF-ETGEHQYQYKDILSVFEDAFVDNFDC----KDVQDM-PKSILSKE--EIDH 53

Query: 140 L--EPSVREE---LVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRT------ 188
           +            L      ++    ++  E             Y ++   I+T      
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-------RINYKFLMSPIKTEQRQPS 106

Query: 189 -NEEIF-----------KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDV----- 231
               ++           ++F   ++V          +   +L   L  L    +V     
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAK-YNVSR-------LQPYLKLRQALLELRPAKNVLIDGV 158

Query: 232 ---GTLLLALQ--RTIEFEDELAEKFG------GDSRSSEIGLDI-------------EE 267
              G   +AL    + + + ++   F        +  S E  L++               
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 268 IGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSV------PGA--GFNFR-RI 318
                N +  +  I+ +  R L          K     L V        A   FN   +I
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLK--------SKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 319 ISSCFEPHLTAYVELEERT---LMENLEKLVQEETWDI 353
           + +     +T ++     T   L  +   L  +E   +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	391
2d2s_A	235	Exocyst complex component EXO84; tethering complex	93.19

>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2

Probab=93.19  E-value=5.3  Score=37.01  Aligned_cols=187  Identities=12%  Similarity=0.094  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcccC---CCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 016342           43 HRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAY---RDIPKITELREKFKNIKQILKSHVFSDFSSLGTGK  119 (391)
Q Consensus        43 krL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Y---ksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~  119 (391)
                      +++.=+.+..|.|...+..|+|.+++.++.....++...++=   .+.+.+..+..+++.-+..|.+++..+...  ...
T Consensus        13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~   90 (235)
T 2d2s_A           13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNE   90 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSS
T ss_pred             hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCC
Confidence            345667778899999999999999999999999999665531   235556778888888888898888877644  111


Q ss_pred             CchhhhhhHhHhhhhHHHHhcCh--hHHHHHHHHHHHHhHHHHHHh-cCCcccccccchhhhHHHHHHhhhhhhhhcCcC
Q 016342          120 ETEETNLLQQLSDACLVVDALEP--SVREELVNNFCRRELTSYEQI-FEGAELAKLDKTERRYAWIKRRIRTNEEIFKIF  196 (391)
Q Consensus       120 ~~~~~~~~~~L~~aC~vvD~L~~--~~k~~li~wf~~~~L~eY~~i-F~~~E~~~Ldni~RRy~Wfkr~L~~~e~~~~iF  196 (391)
                             ...++.+...+--||.  .+++-+++..-+..=+.-+++ |.++-..-+-++.  +.+|.-+-+..++.-.+|
T Consensus        91 -------~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~Ls--~i~Fs~I~~t~~~f~~~F  161 (235)
T 2d2s_A           91 -------IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLA--VIRFQTIKKTVEDFQDIF  161 (235)
T ss_dssp             -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHH--HHHHHHHHHHHHHHHHHS
T ss_pred             -------HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence                   2457777788777885  455666666555555555555 3333344445555  455655555555544699


Q ss_pred             CCCccccHHHHHHHHHHHHHHH---HHHHHhccCCCCHHHHHHHHHHhHHH
Q 016342          197 PPSWHVPYLLNIQFCKKTRKQL---EGILDNLTERPDVGTLLLALQRTIEF  244 (391)
Q Consensus       197 P~~W~v~~~L~~~Fc~~Tr~dL---~~iL~~~~~~~dv~~Ll~aLq~T~~F  244 (391)
                      |.+   .-..+..|...-+.++   ..++.+.--. +..+.-++++.+...
T Consensus       162 ~~~---~~~~~S~lV~Wa~~eve~f~~l~~rqv~~-~~~l~~ecv~i~~~~  208 (235)
T 2d2s_A          162 KEL---GAKISSILVDWCSDEVDNHFKLIDKQLLN-DEMLSPGSIKSSRKQ  208 (235)
T ss_dssp             TTC---CHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHH
T ss_pred             CCC---CcccccHHHHHHHHHHHHHHHHHHHHccC-CccHHHHHHHHHHHH
Confidence            986   2344444555545444   4444422111 333334777766655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	391
d2d2sa1	229	Exocyst complex component EXO84 {Baker's yeast (Sa	94.42

>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=1.4  Score=38.31  Aligned_cols=72  Identities=13%  Similarity=0.247  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcccC---CCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016342           42 LHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAY---RDIPKITELREKFKNIKQILKSHVFSDFS  113 (391)
Q Consensus        42 LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Y---ksi~~I~~L~~~~~~i~~~L~~qI~~DF~  113 (391)
                      -+||.=+.+..|.|...+..|+|.|+..++....+.+.....+   .++.-+..+..++++.+..|..++..+..
T Consensus         6 ~~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~   80 (229)
T d2d2sa1           6 AQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL   80 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4688889999999999999999999999999999988776654   33445566778888888888888776554