Citrus Sinensis ID: 016349

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
MLCPALKYACFSSCVRPQFLKAKSFSSSSSSSSSSSSPSSLQASTWSGLQKWRDGPLNGNRYWGPNGPEPLQDSPPSPSADDNDKIDSASSLAELGSLVLSTSDPLSKSKLSHLAFSRWRILNLPIGVSVPPSRPARPPKPKLVSAKEIPAPKNSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEYDVELKGPFNYSARDEAGIPRDWYDPSAAHEQDKNQKHDANNKLSVVYERLASIISMESENSNLKRTSG
cccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHccccHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHcccccccccccc
ccccHHHHHHHcccccccccccccccccccccccccccccHcccccccHHHHHccccHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccc
mlcpalkyacfsscvrpqflkaksfsssssssssssspsslqastwsglqkwrdgplngnrywgpngpeplqdsppspsaddndkidsasSLAELGSLvlstsdplsksklshLAFSRWRIlnlpigvsvppsrparppkpklvsakeipapknsglplnaYMLHNLAHVELNAIDLawdtvvrfspftdiledgffadfahvaddesrhFAWCSQRLAELgfkygdmpahdvlwnqckkssdnVAARLAVIPLvqeargldagprltqkligfgdhrtsnIVARIADEEVAHVAVGVHWFLSVCQkmkrapcstfKDLLKEYDVelkgpfnysardeagiprdwydpsaaheqdknqkhdannKLSVVYERLASIISMEsensnlkrtsg
MLCPALKYACFSSCVRPQFLKAKSFSssssssssssspssLQASTWSGLQKWRDGPLNGNRYWGPNGPEPLQDSPPSPSADDNDKIDSASSLAELGSLVLSTSDPLSKSKLSHLAFSRWRILNLpigvsvppsrpaRPPKPKLVSAKEIPAPKNSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLvqeargldagprLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEYDVELKGPFNYSARDEAGIPRDWYDPSAAheqdknqkhdannkLSVVYERLASiismesensnlkrtsg
MLCPALKYACFSSCVRPQFLKAKsfsssssssssssspssLQASTWSGLQKWRDGPLNGNRYWGPNGPEPLQdsppspsaddNDKIDSASSLAELGSLVLSTSDPLSKSKLSHLAFSRWRILNLPIGvsvppsrparppkpkLVSAKEIPAPKNSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEYDVELKGPFNYSARDEAGIPRDWYDPSAAHEQDKNQKHDANNKLSVVYERLASIISMESENSNLKRTSG
**CPALKYACFSSCVRPQFL*******************************************************************************************SHLAFSRWRILNLPIGV****************************LPLNAYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEYDVELKGPFNYSARDEAGIPRDW**********************VVYERLA*****************
**CPALKYACFSSCVRPQF*************************TWSGLQKWRDGPLN********************************SLAELGSLVLSTSDPLSKSKLSHLAFSRWRILNLPIGVSVPPSRPARPPK***********************LHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEYDVELKGPFNYSARDEAGIPRDWYDPS********************YERLASIIS*************
MLCPALKYACFSSCVRPQFLK***************************LQKWRDGPLNGNRYWGPNGPE***************KIDSASSLAELGSLVLSTSDPLSKSKLSHLAFSRWRILNLPIGVSVP***********LVSAKEIPAPKNSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEYDVELKGPFNYSARDEAGIPRDWYDPSA*********HDANNKLSVVYERLASIISMES**********
*LCPALKYACFSSCVRPQFL**************************SGLQKWRDGPLNGNRYWGPNGP*************D*DK*DSASSLAELGSLVLSTSDPLSKSKLSHLAFSRWRILNLPIGVSVPPSRPARPPKPKLVSAKEIPAPKNSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEYDVELKGPFNYSARDEAGIPRDWYDPSAAHEQD*******NNKLSVVYERLASIISMESEN********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLCPALKYACFSSCVRPQFLKAKSFSSSSSSSSSSSSPSSLQASTWSGLQKWRDGPLNGNRYWGPNGPEPLQDSPPSPSADDNDKIDSASSLAELGSLVLSTSDPLSKSKLSHLAFSRWRILNLPIGVSVPPSRPARPPKPKLVSAKEIPAPKNSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEYDVELKGPFNYSARDEAGIPRDWYDPSAAHEQDKNQKHDANNKLSVVYERLASIISMESENSNLKRTSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query391 2.2.26 [Sep-21-2011]
P43935288 Uncharacterized protein H yes no 0.537 0.729 0.364 2e-30
>sp|P43935|Y077_HAEIN Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0077 PE=4 SV=1 Back     alignment and function desciption
 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 7/217 (3%)

Query: 136 ARPPKPKLVSAKEIPAPKNSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFSP-FTDILED 194
           A P KP LV+ K++P    +     A  LH +AH+E NAI+L  D   RF     + L +
Sbjct: 58  AFPEKPLLVAPKDVPKRSFATEEGYAATLHAIAHIEFNAINLGLDAAWRFGRNAQEELGE 117

Query: 195 G--FFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVI 252
           G  F  D+  VA +ES HF+  ++ L  LG++YGD  AH  LW   + ++ ++  R+A++
Sbjct: 118 GLAFVKDWLRVAREESTHFSLVNEHLKTLGYQYGDFEAHAGLWEMAQATAHDIWERMALV 177

Query: 253 PLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAP 312
           P V EARGLDA P L +K+    D    NI+  I  +E+ HV +G HW+ ++ +K     
Sbjct: 178 PRVLEARGLDATPVLQEKIAQRKDFAAVNILDIILRDEIGHVYIGNHWYHALSKKRGLDA 237

Query: 313 CSTFKDLLKEYDVEL-KGPFNYSARDEAGIPR---DW 345
              F +LL +Y + + KG  N  AR +AG  +   DW
Sbjct: 238 MKCFTELLHKYRIVIFKGVINTDARIQAGFTQHELDW 274

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
224146486343 predicted protein [Populus trichocarpa] 0.864 0.985 0.786 1e-156
225446553381 PREDICTED: uncharacterized protein HI_00 0.974 1.0 0.741 1e-154
449444707386 PREDICTED: uncharacterized protein HI_00 0.879 0.891 0.762 1e-152
449516323386 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.879 0.891 0.762 1e-152
356543888389 PREDICTED: uncharacterized protein HI_00 0.874 0.879 0.732 1e-144
255568311388 conserved hypothetical protein [Ricinus 0.890 0.896 0.743 1e-143
302143390302 unnamed protein product [Vitis vinifera] 0.764 0.990 0.818 1e-140
30679617383 uncharacterized protein [Arabidopsis tha 0.953 0.973 0.667 1e-137
19347924379 unknown protein [Arabidopsis thaliana] 0.953 0.984 0.667 1e-137
147820895 528 hypothetical protein VITISV_035454 [Viti 0.925 0.685 0.616 1e-133
>gi|224146486|ref|XP_002326023.1| predicted protein [Populus trichocarpa] gi|222862898|gb|EEF00405.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/346 (78%), Positives = 308/346 (89%), Gaps = 8/346 (2%)

Query: 46  WSGLQKWRDGPLNGNRYWGPNGPEPLQDSPPSPSADDNDK--IDSASSLAELGSLVLSTS 103
           WSGLQ WR+ PLN NR+WGP GP+    +PPS S D N    +DSASSLAELG+LVLSTS
Sbjct: 1   WSGLQSWRESPLNKNRFWGPKGPQ----TPPS-SIDTNGTSLLDSASSLAELGALVLSTS 55

Query: 104 DPLSKSKLSHLAFSRWRILNLPIGVSVPPSRPARPPKPKLVSAKEIPAPKNSGLPLNAYM 163
           DPLSKSKLSHLAFS+WR   LP+GV  PPSRPARPPKP+LVS KEIPAPK+SG+PLN YM
Sbjct: 56  DPLSKSKLSHLAFSKWRNEKLPVGVYDPPSRPARPPKPELVSPKEIPAPKDSGMPLNVYM 115

Query: 164 LHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGF 223
           LHNLAHVELNAIDLAWDTVVRFSPF++ILE+GFFADFAHVADDESRHFAWCSQRL ELGF
Sbjct: 116 LHNLAHVELNAIDLAWDTVVRFSPFSEILEEGFFADFAHVADDESRHFAWCSQRLDELGF 175

Query: 224 KYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIV 283
           +YGDMPAH++LW +C+KSSD+VAARLAVIPLVQEARGLDAGPRL QKL+GFGD+ TS IV
Sbjct: 176 RYGDMPAHNLLWRECEKSSDDVAARLAVIPLVQEARGLDAGPRLVQKLVGFGDNITSKIV 235

Query: 284 ARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFK-DLLKEYDVELKGPFNYSARDEAGIP 342
           ARIADEEVAHVAVGV+WF+SVCQKM RAPCSTFK DLL+EY+VELKGPFNYSARDEAGIP
Sbjct: 236 ARIADEEVAHVAVGVYWFVSVCQKMGRAPCSTFKVDLLREYNVELKGPFNYSARDEAGIP 295

Query: 343 RDWYDPSAAHEQDKNQKHDANNKLSVVYERLASIISMESENSNLKR 388
           RDWYD S+ ++QD+  K +   KLSVVYERLASII+ME+EN++L +
Sbjct: 296 RDWYDKSSTNKQDEVTKPNTPEKLSVVYERLASIIAMETENASLNK 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446553|ref|XP_002279537.1| PREDICTED: uncharacterized protein HI_0077-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444707|ref|XP_004140115.1| PREDICTED: uncharacterized protein HI_0077-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516323|ref|XP_004165196.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein HI_0077-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356543888|ref|XP_003540390.1| PREDICTED: uncharacterized protein HI_0077-like [Glycine max] Back     alignment and taxonomy information
>gi|255568311|ref|XP_002525130.1| conserved hypothetical protein [Ricinus communis] gi|223535589|gb|EEF37257.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|302143390|emb|CBI21951.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|30679617|ref|NP_172114.2| uncharacterized protein [Arabidopsis thaliana] gi|24030288|gb|AAN41316.1| unknown protein [Arabidopsis thaliana] gi|332189846|gb|AEE27967.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|19347924|gb|AAL85983.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147820895|emb|CAN67479.1| hypothetical protein VITISV_035454 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
TAIR|locus:2038550383 AT1G06240 "AT1G06240" [Arabido 0.882 0.900 0.657 2.9e-119
TAIR|locus:2184372291 AT5G04520 "AT5G04520" [Arabido 0.557 0.749 0.355 1.3e-38
ZFIN|ZDB-GENE-030616-19426 si:ch73-314g15.3 "si:ch73-314g 0.675 0.619 0.335 1.5e-37
UNIPROTKB|Q5LRA0278 SPO2229 "Uncharacterized prote 0.680 0.956 0.323 2.5e-33
TIGR_CMR|SPO_2229278 SPO_2229 "conserved hypothetic 0.680 0.956 0.323 2.5e-33
UNIPROTKB|Q604Q4278 MCA2484 "Putative uncharacteri 0.493 0.694 0.373 4.2e-31
ASPGD|ASPL0000064279446 AN7364 [Emericella nidulans (t 0.521 0.457 0.358 1.9e-28
UNIPROTKB|Q5HTZ1265 CJE1256 "Putative uncharacteri 0.488 0.720 0.342 3e-21
TIGR_CMR|CJE_1256265 CJE_1256 "conserved hypothetic 0.488 0.720 0.342 3e-21
TAIR|locus:2038550 AT1G06240 "AT1G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
 Identities = 230/350 (65%), Positives = 268/350 (76%)

Query:    42 QASTWSGLQKWRDGPLNGNRYWGPNGPEPLQXXXXXXXXXXNDKIDSASSLAELGSLVLS 101
             Q   WSGL+ WR  P+N  R WGP GP  L              + +ASSLA+LG+LVLS
Sbjct:    33 QHKLWSGLENWRKSPVNDLRLWGPTGPL-LPSSSDSISADFYGLVSAASSLADLGALVLS 91

Query:   102 TSDPLSKSKLSHLAFSRWRILNLPIGXXXXXXXXXXXXXX-XLVSAKEIPAPKNSGLPLN 160
             TSDPLSKS +SHLAFSRWR  NLP+G                LV+  ++P PK+S LPLN
Sbjct:    92 TSDPLSKSHISHLAFSRWRRENLPVGSISHLPSSPARPPKPLLVATNQVPNPKDSNLPLN 151

Query:   161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAE 220
             A+MLHNLAHVELNAIDLAWDTV RFSPF D+L   FF DFAHVADDESRHF WCSQRLAE
Sbjct:   152 AHMLHNLAHVELNAIDLAWDTVARFSPFFDLLGHNFFDDFAHVADDESRHFLWCSQRLAE 211

Query:   221 LGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTS 280
             LGFKYGD+PA+++L  +C+K+S+NVAARLA IPLVQEARGLDAGPRL ++L GFGD+RTS
Sbjct:   212 LGFKYGDIPANNLLMRECEKTSNNVAARLACIPLVQEARGLDAGPRLVKRLTGFGDNRTS 271

Query:   281 NIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEYDVELKGPFNYSARDEAG 340
              IVA+IA+EEVAHVAVGV WFLSVCQKM RAP  TFKDL+KEY VEL+GPFN+SAR+ AG
Sbjct:   272 KIVAKIAEEEVAHVAVGVDWFLSVCQKMNRAPSPTFKDLIKEYGVELRGPFNHSAREVAG 331

Query:   341 IPRDWYDPSAAHEQDK--NQKHDANNKLSVVYERLASIISMESENSNLKR 388
             IPRDWYDPS   E DK  N++ D   +LS VY+RL  IISMESENS+L++
Sbjct:   332 IPRDWYDPSCGTEVDKGDNEQGD-KEQLSAVYDRLTHIISMESENSSLEK 380
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2184372 AT5G04520 "AT5G04520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-19 si:ch73-314g15.3 "si:ch73-314g15.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LRA0 SPO2229 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2229 SPO_2229 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q604Q4 MCA2484 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
ASPGD|ASPL0000064279 AN7364 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5HTZ1 CJE1256 "Putative uncharacterized protein" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1256 CJE_1256 "conserved hypothetical protein" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
pfam04305250 pfam04305, DUF455, Protein of unknown function (DU 1e-106
COG2833268 COG2833, COG2833, Uncharacterized protein conserve 2e-68
cd00657130 cd00657, Ferritin_like, Ferritin-like superfamily 8e-19
>gnl|CDD|218017 pfam04305, DUF455, Protein of unknown function (DUF455) Back     alignment and domain information 
 Score =  312 bits (802), Expect = e-106
 Identities = 108/254 (42%), Positives = 149/254 (58%), Gaps = 9/254 (3%)

Query: 100 LSTSDPLSKSKLSHLAFSRWRILNLPI---GVSVPPSRPARPPKPKLVSAKEIPAPKN-S 155
           L T DP  K  L+    + W    LP+        P RP RP KP+LV+ +++P      
Sbjct: 1   LLTPDPEEKVALTRALAAAWFAGELPLASPEPGTAPPRPGRPAKPELVAPRDVPRRGKLG 60

Query: 156 GLPLNAYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCS 215
                A +LH LAH+ELNAIDLA D V RF      L   F+ D+  VADDE++HF    
Sbjct: 61  SEEGRAALLHALAHIELNAIDLALDAVARFRG----LPREFYDDWLKVADDEAKHFRLLR 116

Query: 216 QRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFG 275
           +RL ELG +YGD PAHD LW   +K++D++ AR+A++P V EARGLDA P +  KL G G
Sbjct: 117 ERLEELGSEYGDFPAHDGLWEAAEKTADDLLARMALVPRVLEARGLDATPGIIAKLEGAG 176

Query: 276 DHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEYDV-ELKGPFNYS 334
           D+ ++ I+  I  +E+ HVA+G  WF  +C++    P  TF++L+++Y    LKGPFN  
Sbjct: 177 DNESAAILDVILRDEIGHVAIGNRWFRFLCERRGLDPIETFRELVRKYFRGALKGPFNEE 236

Query: 335 ARDEAGIPRDWYDP 348
           AR +AG   D   P
Sbjct: 237 ARRKAGFSEDELAP 250

Length = 250
>gnl|CDD|225389 COG2833, COG2833, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 391
COG2833268 Uncharacterized protein conserved in bacteria [Fun 100.0
PF04305253 DUF455: Protein of unknown function (DUF455); Inte 100.0
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 99.02
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 97.61
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 97.52
cd01055156 Nonheme_Ferritin nonheme-containing ferritins. Non 97.3
PRK13456186 DNA protection protein DPS; Provisional 96.7
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 96.58
cd07910180 MiaE MiaE tRNA-modifying nonheme diiron monooxygen 96.42
cd01051156 Mn_catalase Manganese catalase, ferritin-like diir 96.36
cd07908154 Mn_catalase_like Manganese catalase-like protein, 96.28
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 96.25
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 96.22
PRK10635158 bacterioferritin; Provisional 96.2
PF00210142 Ferritin: Ferritin-like domain; InterPro: IPR00833 95.86
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 95.8
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 95.63
cd01058304 AAMH_B Aromatic and Alkene Monooxygenase Hydroxyla 95.38
PF05138263 PaaA_PaaC: Phenylacetic acid catabolic protein; In 95.19
TIGR02156289 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subu 95.11
PRK10304165 ferritin; Provisional 94.92
TIGR00754157 bfr bacterioferritin. Bacterioferritin is a homomu 94.8
COG2406172 Protein distantly related to bacterial ferritins [ 94.73
cd01042165 DMQH Demethoxyubiquinone hydroxylase, ferritin-lik 94.55
cd01052148 DPSL DPS-like protein, ferritin-like diiron-bindin 94.52
PRK13778314 paaA phenylacetate-CoA oxygenase subunit PaaA; Pro 94.51
PF13668137 Ferritin_2: Ferritin-like domain 94.48
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 94.43
TIGR02158237 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subu 94.26
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 93.92
cd01057 465 AAMH_A Aromatic and Alkene Monooxygenase Hydroxyla 93.92
cd01056161 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferr 93.8
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 93.24
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 92.01
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 91.88
PF02332233 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; 90.91
COG4445203 MiaE Hydroxylase for synthesis of 2-methylthio-cis 89.85
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 89.66
COG1633176 Uncharacterized conserved protein [Function unknow 89.3
PF03232172 COQ7: Ubiquinone biosynthesis protein COQ7; InterP 88.1
PF06175240 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); Inter 87.31
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 86.04
cd01043139 DPS DPS protein, ferritin-like diiron-binding doma 85.52
PTZ00211330 ribonucleoside-diphosphate reductase small subunit 85.49
PLN02492324 ribonucleoside-diphosphate reductase 80.29
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-91  Score=659.50  Aligned_cols=257  Identities=39%  Similarity=0.677  Sum_probs=239.6

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCCC---CCCCCCCCCCCCCCccccCCCCCCCCCCCchhhHHHHHH
Q 016349           90 SSLAELGSLVLSTSDPLSKSKLSHLAFSRWRILNLPIG---VSVPPSRPARPPKPKLVSAKEIPAPKNSGLPLNAYMLHN  166 (391)
Q Consensus        90 ~sL~~~A~~vL~t~dp~~K~~lt~~~~~~w~~g~l~~~---~~~~p~~P~RP~kp~Lv~P~~vPrrk~~~~~~ra~lLHa  166 (391)
                      ++|...+..+|.++||++|++++++-+..|......+.   ....+.+||||++|.||+|++||+|...+..|++++||+
T Consensus         3 ~~l~~~~~~al~~~d~~~K~~l~~e~a~~~~~~~~~~~~p~~~~~~~~~grp~kp~Lv~P~~v~rr~l~t~~g~aallHA   82 (268)
T COG2833           3 KSLRGEAEEALYEADPDEKTRLAQENARRWFQSALSARSPEDPPIFERPGRPAKPVLVPPTQVPRRSLNTTHGRAALLHA   82 (268)
T ss_pred             hhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCeecCcccCCcccccchhHHHHHHHH
Confidence            58999999999999999999999555555543333222   223357999999999999999999988888999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHH
Q 016349          167 LAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVA  246 (391)
Q Consensus       167 iAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dll  246 (391)
                      ||||||||||||+|++|||.+    +|.+||+||++||.||++||+|+++||++||++|||||+|+|||+|+++|.+|+.
T Consensus        83 iAHIEfNAInLaLDa~~RF~~----~p~~F~~dWm~VA~EE~~HF~Ll~~~L~~LG~~YGDfpaHdgLw~~a~~T~~dl~  158 (268)
T COG2833          83 IAHIEFNAINLALDAVYRFAP----LPLQFYDDWMRVADEEAKHFRLLRERLKSLGYDYGDFPAHDGLWQMAEATANDLL  158 (268)
T ss_pred             HHHHhhhhHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcccccHHHHHHHhhcCHH
Confidence            999999999999999999984    8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHHcCCCchHHHHHHHHhc-CC
Q 016349          247 ARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEY-DV  325 (391)
Q Consensus       247 aRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~g~dp~~tf~~lv~~~-~~  325 (391)
                      +|||||||||||||||+||.+++|+++.||.++++||+|||+||||||++|++||+++|+++|+||..+|++|++.| .+
T Consensus       159 ~RmalVprvLEARGLDatP~l~aK~~~~gD~~~~~iLdIIlrDEigHVaiGn~Wyrflc~r~gldp~~~FreL~r~y~~~  238 (268)
T COG2833         159 ARMALVPRVLEARGLDATPSLRAKLAETGDSEAAAILDIILRDEIGHVAIGNKWYRFLCARRGLDPAATFRELVRAYFRF  238 (268)
T ss_pred             HHhhhhhhHHhhccCCCCHHHHHHHHHcCchHHHHHHHHHHhccccceeechHHHHHHHHhcCCChHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 57


Q ss_pred             CCCCCCCHHHHHhcCCCcccccchh
Q 016349          326 ELKGPFNYSARDEAGIPRDWYDPSA  350 (391)
Q Consensus       326 ~lk~PFN~eAR~~AGfs~~~y~~L~  350 (391)
                      .+|||||.+||.+||||+.+|+.+.
T Consensus       239 ~lkg~~N~~AR~~AGfT~~e~d~i~  263 (268)
T COG2833         239 ILKGPFNIDARAKAGFTQSEYDSIE  263 (268)
T ss_pred             ccCCcccHHHHHHcCCCHHHHHHHH
Confidence            8999999999999999999988876

>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd01055 Nonheme_Ferritin nonheme-containing ferritins Back     alignment and domain information
>PRK13456 DNA protection protein DPS; Provisional Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>PRK10635 bacterioferritin; Provisional Back     alignment and domain information
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms [] Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain Back     alignment and domain information
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid [] Back     alignment and domain information
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit Back     alignment and domain information
>PRK10304 ferritin; Provisional Back     alignment and domain information
>TIGR00754 bfr bacterioferritin Back     alignment and domain information
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only] Back     alignment and domain information
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01056 Euk_Ferritin eukaryotic ferritins Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1 Back     alignment and domain information
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ] Back     alignment and domain information
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 97.23
2inc_A 491 Toluene, O-xylene monooxygenase oxygenase subunit; 97.05
3uno_A189 Probable bacterioferritin BFRB; ferroxidase activi 97.02
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 96.98
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 96.91
1eum_A165 Ferritin 1; ECFTNA, metal binding protein; 2.05A { 96.87
1rcd_A173 L ferritin; iron storage; 2.00A {Rana catesbeiana} 96.84
3qz3_A184 Ferritin; structural genomics, the center for stru 96.83
1krq_A167 Ferritin; H-chain like four-helix bundle, binding 96.82
1s3q_A173 Ferritin; ferroxidase, four helix bundle, iron sto 96.8
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 96.79
2cih_A183 Ferritin heavy chain; apoferritin, ferroxidase, DI 96.67
3e6s_A168 Ferritin; iron storage, ferroxidase, oxidoreductas 96.65
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 96.53
2v2p_A174 Ferritin light chain; metal transport, iron, haemi 96.51
3ka8_A176 Ferritin, middle subunit; iron storage, DIIRON, ir 96.48
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 96.45
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 96.38
3pvt_A311 Phenylacetic acid degradation protein PAAA; protei 96.3
3a68_A212 Sferh-4, ferritin-4, chloroplastic; 4-helix bundle 96.28
2jd6_0174 Ferritin homolog, ferritin; metal transport, iron, 96.24
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 96.16
3oj5_A189 Ferritin family protein; ferroxidase, cytosol, oxi 96.14
3bvf_A181 Ferritin; iron storage, metal-binding, oxidoreduct 96.0
3r2k_A154 Bacterioferritin, BFR; bacterial ferritin, iron bi 95.99
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 95.89
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 95.88
3vnx_A204 Ferritin; 4-helix bundle, iron storage, oxidoreduc 95.79
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 95.64
1vlg_A176 Ferritin; TM1128, structural genomics, JCSG, prote 95.54
3kxu_A191 Ferritin; iron storage protein, disorder, iron, me 95.46
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 95.42
1otk_A249 Protein PAAC, phenylacetic acid degradation protei 95.07
2itb_A206 TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative 95.03
1mty_D 512 Methane monooxygenase hydroxylase; dinuclear iron 95.01
1z6o_M191 Ferritin heavy chain; metal binding protein, iron 94.62
3ge3_A 500 Toluene-4-monooxygenase system protein A; DIIRON h 94.4
3u52_A 511 Phenol hydroxylase component PHN; 4-helix bundle, 94.22
2vxx_A192 Starvation induced DNA binding protein; stress res 94.11
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 94.03
2fzf_A175 Hypothetical protein; structural genomics, southea 93.41
3ge3_B327 Toluene-4-monooxygenase system protein E; DIIRON h 93.37
1ji5_A142 DLP-1; dodecamer, four-helix bundle, metal transpo 92.84
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 92.2
1mhy_B395 Methane monooxygenase hydroxylase; oxidoreductase, 92.09
1o9i_A266 Pseudocatalase; oxidoreductase, hexamer, dimangane 92.04
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 91.79
1mty_B384 Methane monooxygenase hydroxylase; dinuclear iron 91.53
2c41_A158 DPS family DNA-binding stress response protein; ir 91.48
2inc_B322 Toluene, O-xylene monooxygenase oxygenase subunit; 91.15
2v8t_A302 Manganese-containing pseudocatalase; manganese cat 90.95
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 90.24
1jig_A146 DLP-2; dodecamer, four-helix bundle, metal transpo 90.07
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 89.16
4di0_A144 Rubrerythrin; ssgcid, seattle structural genomics 89.08
1n1q_A149 DPS protein; four-helix bundle, unknown function; 89.04
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 88.13
3k6c_A95 Uncharacterized protein NE0167; structural genomic 87.68
2d5k_A156 DPS, DPS family protein; four helix bundle, metal 86.68
1zpy_A95 Hypothetical protein NE0167; structural genomics, 86.04
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 85.98
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 85.87
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 85.83
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 84.72
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 84.32
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 84.28
1z6o_A212 Ferritin light chain; metal binding protein, iron 82.96
3pf7_A 481 Benzoyl-COA oxygenase component B; DIIRON center, 82.68
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 82.07
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 81.64
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 80.87
1tjo_A182 Iron-rich DPSA-homolog protein; ferritin, low-iron 80.46
2chp_A153 MRGA, metalloregulation DNA-binding stress protein 80.44
1lko_A191 Rubrerythrin all-iron(II) form; reduced form, DIIR 80.13
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
Probab=97.23  E-value=0.016  Score=48.01  Aligned_cols=120  Identities=13%  Similarity=0.065  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC----CCCCccchhhHH
Q 016349          161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFK----YGDMPAHDVLWN  236 (391)
Q Consensus       161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~----YGDlPaH~gLWe  236 (391)
                      +..|-..-..|+.|+....-..+.+.+.  +++ ++..=|-+.+.||..|...+.+|+..+|..    .+.++.    | 
T Consensus        12 ~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~--~~~-~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~----~-   83 (149)
T 2qqy_A           12 IEGLNEDLAGEYSAIIMYNHNAATVSGI--YRQ-VLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLRVKQ----A-   83 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCST--THH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCC----C-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCCCCCC----C-
Confidence            4455555568999999988777777642  222 455556678999999999999999999864    121111    1 


Q ss_pred             HHHhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHh
Q 016349          237 QCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVA  295 (391)
Q Consensus       237 ~a~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa  295 (391)
                            .++..=|.. -+-.|......-..+++.....||..+.++|+.|+.||..|+.
T Consensus        84 ------~~~~e~l~~-~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~eee~h~~  135 (149)
T 2qqy_A           84 ------EDVREMLEY-ARQSEYETIKRYEKRKEQAANLNMTELVVKLEDMIADETNHME  135 (149)
T ss_dssp             ------SSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence                  111111111 1234443333334455566668999999999999999999984
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A Back     alignment and structure
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A Back     alignment and structure
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Back     alignment and structure
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A Back     alignment and structure
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1 Back     alignment and structure
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Back     alignment and structure
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A Back     alignment and structure
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ... Back     alignment and structure
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A Back     alignment and structure
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A Back     alignment and structure
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa} Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A* Back     alignment and structure
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A Back     alignment and structure
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7 Back     alignment and structure
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ... Back     alignment and structure
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Back     alignment and structure
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A Back     alignment and structure
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A Back     alignment and structure
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus} Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* 3q14_B 3q2a_B* 3q3m_B* 3q3n_B* 3q3o_B* 3rmk_B* 3ri7_B Back     alignment and structure
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B Back     alignment and structure
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ... Back     alignment and structure
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus} Back     alignment and structure
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B* Back     alignment and structure
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1 Back     alignment and structure
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp} Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Back     alignment and structure
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A Back     alignment and structure
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis} Back     alignment and structure
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 391
d2fzfa1158 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {A 5e-04
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 158 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 17/150 (11%), Positives = 51/150 (34%), Gaps = 11/150 (7%)

Query: 149 IPAPKNSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFA-HVADDE 207
           +P  K +   L   +   +   E+ A +        +    + ++     +    +A++E
Sbjct: 2   LPIEKMADFSLEELLGMAIKA-EIGARE-------FYKSLAEKIKIEALKEKINWLAEEE 53

Query: 208 SRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGL--DAGP 265
            +H A   +  +++      +   + +  + +  +  +     +I L++ A      A  
Sbjct: 54  KKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAE 113

Query: 266 RLTQKLIGFGDHRTSNIVARIADEEVAHVA 295
              +      +     ++  +AD E  H  
Sbjct: 114 FYLKLEEMVKEEEKKRLMRYLADMERGHYY 143

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 97.73
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 97.27
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 97.13
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 97.06
d2inca1 491 Toluene, o-xylene monooxygenase oxygenase subunit 96.92
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 96.89
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 96.82
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 96.8
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 96.71
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 96.67
d2itba1199 Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Ps 96.46
d1euma_161 Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5 96.31
d1s3qa1162 Non-hem ferritin {Archaeon Archaeoglobus fulgidus 96.23
d1vlga_164 Non-hem ferritin {Thermotoga maritima [TaxId: 2336 95.78
d1r03a_171 (Apo)ferritin {Human (Homo sapiens), mitocondial i 95.68
d1mtyd_ 512 Methane monooxygenase hydrolase alpha subunit {Met 95.62
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 95.48
d1krqa_165 Non-hem ferritin {Campylobacter jejuni [TaxId: 197 95.18
d1lb3a_179 (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090] 94.76
d1bg7a_173 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 94.61
d1rcda_171 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 93.96
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 93.93
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 93.9
d1otka_244 Phenylacetic acid degradation protein PaaC {Escher 93.29
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 91.74
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 90.95
d1jkva_266 Manganese catalase (T-catalase) {Lactobacillus pla 89.65
d1zpya191 Hypothetical protein NE0167 {Nitrosomonas europaea 88.83
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 86.23
d1jk0b_285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 84.17
d1mtyb_384 Methane monooxygenase hydrolase beta subunit {Meth 82.76
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 80.94
d1z6om1191 (Apo)ferritin {Cabbage looper(Trichoplusia ni), H 80.5
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=97.73  E-value=0.00015  Score=61.10  Aligned_cols=128  Identities=22%  Similarity=0.253  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccch-hHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC----CCCCccchhhH
Q 016349          161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILE-DGFFADFAHVADDESRHFAWCSQRLAELGFK----YGDMPAHDVLW  235 (391)
Q Consensus       161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP-~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~----YGDlPaH~gLW  235 (391)
                      +-+|-.....|+.|+...+-..+-|.+    +. .++-.=|.+.|.||..|..++.+|+..+|..    +.+.|-+..  
T Consensus        10 i~~Ln~~l~~E~~a~~~Y~~~a~~~~~----~~~~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~~~~~--   83 (169)
T d1nf4a_          10 IEVLNKARAMELHAIHQYMNQHYSLDD----MDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQ--   83 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCCCCSC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccccccccCCC--
Confidence            556777778899999987655555532    12 2344445567999999999999999999965    333333322  


Q ss_pred             HHHHhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHH
Q 016349          236 NQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQK  307 (391)
Q Consensus       236 e~a~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~  307 (391)
                              ++..-+.. -+-.|....+.-+.+++.....||..++++|+.|+.||..|+    .||..++..
T Consensus        84 --------~~~e~l~~-~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~il~eE~~H~----~~~e~~l~~  142 (169)
T d1nf4a_          84 --------AVPVIYES-DADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHL----TYYENIGSH  142 (169)
T ss_dssp             --------CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred             --------CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence                    22211111 134555555555667777888999999999999999999997    577776664
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Back     information, alignment and structure
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]} Back     information, alignment and structure
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1otka_ a.25.1.2 (A:) Phenylacetic acid degradation protein PaaC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]} Back     information, alignment and structure