Citrus Sinensis ID: 016357

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVRFGSGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNFERRRENMQNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGGTAATAEQLWRNAATTELWRNTTTEQLWRNSTATK
Secondary Structure (PSIPRED)
cHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccHHHHHccEEEEEEEEEEEEEEEEcHHHHHHHcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHEcccccccEEEEEcHHHHHHHcccccEEEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccHHHHcccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MATQIFSRMFLSNPTATKALASLLSRsfsttattikpssrslpllflnrfrplstavrfgsggivtgpsargmstrpataslndsspnwsnrppketilldgcdfEHWLVVmekpegdptrDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALvdeetsyklkelpgvrwvlpdsyldvknkdyggepfingqavpydpkyheEWVRNNARanernrrndrprsydrsrNFERRRENMQNrnfqnqgmpnhapnmsgmppnnvpsssnmspnmgsmsqnnlggmpqnnyggtpppnnyggmpppnnyagvpppqnnyggapppqnsyggalppqnkyggtpppqnnyggtaaTAEQLWRNAATTELWRNTTTEQLWRNSTATK
Flexible Loop (DISEMBL)
MATQIFSRMFLSNPTATKALASLLSRSFsttattikpssrslpllFLNRFRPLstavrfgsggivtgpsargmstrpataslndsspnwsnrpPKETILLDGCDFEHWLVVMekpegdptrdEIIDRYIKTLatvfdgredeaRMKIYSVSTKHYYAFGALVDEETSYKLKelpgvrwvlpdSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRnnaranernrrndrprsydrsrnferrrenmqnrnfqnqgmPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGGTAATAEQLWRNAATTElwrnttteqlwrnstatk
Low Complexity Region (SEG)
MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKpssrslpllflnrfrplsTAVRFGSGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVrnnaranernrrndrprsydrsrnFERRRENMQNRNFQNQGMPNHApnmsgmppnnvpsssnmspnmgsmsqnnLGGMPQnnyggtpppnnyggmpppnnyagvpppQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGGTAATAEQLWRNAATTELWRNTTTEQLWRNSTATK
Disordered region (IsUnstruct)
*****************************************LPLLFLNRFRPLSTAVRFGSGGIV*******************************TILLDGCDFEHWLVVMEKPE**PTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWV***************************************************************************************************************************************************AEQLWRNAATTELWRNTTTEQL********
Disordered Region (DISOPRED)
*********FLSNPTATKALAS*******************************STAVRFGS**************************************LDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDY*******************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVRFGSGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARA**************RSRNFERRRENMQNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGGTAATAEQLWRNAATTELWRNTTTEQLWRNSTATK
Disordered Region (DISPRO)
***QIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVRFGSGGIV***************************PPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHE***************************************************************************NNLGGMPQNNYGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQN**GGALPPQNKYGGTPPP***********************WRNTTTEQLWRNSTATK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVRFGSGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNFERRRENMQNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGGTAATAEQLWRNAATTELWRNTTTEQLWRNSTATK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	391	2.2.26 [Sep-21-2011]
Q9LKA5	395	Uncharacterized protein A	yes	no	0.872	0.863	0.545	1e-87
Q38732	230	DAG protein, chloroplasti	N/A	no	0.352	0.6	0.485	9e-31

>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1

 Score =  323 bits (828), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 217/398 (54%), Positives = 250/398 (62%), Gaps = 57/398 (14%)

Query: 1   MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVR-F 59
           MAT   SR  L  P   K+L+ L +RSF+++A   K  + SL    L+R RPL  A    
Sbjct: 1   MATHTISRSILCRPA--KSLSFLFTRSFASSAPLAKSPASSL----LSRSRPLVAAFSSV 54

Query: 60  GSGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDP 119
             GG+V   S +G+ST+  ++SLND +PNWSNRPPKETILLDGCDFEHWLVV+E P+G+P
Sbjct: 55  FRGGLV---SVKGLSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEP 111

Query: 120 TRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWV 179
           TRDEIID YIKTLA +  G EDEARMKIYSVST+ YYAFGALV E+ S+KLKEL  VRWV
Sbjct: 112 TRDEIIDSYIKTLAQIV-GSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWV 170

Query: 180 LPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNF 239
           LPDSYLDV+NKDYGGEPFI+G+AVPYDPKYHEEW+RNNARANERNRRNDRPR+ DRSRNF
Sbjct: 171 LPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNNDRSRNF 230

Query: 240 ERRRENM-----QNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNN------ 288
           ERRRENM       R       P      S  PP ++  S+   P+MG            
Sbjct: 231 ERRRENMAGGPPPQRPPMGGPPPPPHIGGSAPPPPHMGGSAPPPPHMGQNYGPPPPNNMG 290

Query: 289 -------LGGMPQNNYGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQN-------- 333
                   G  PQNN GG  PP NYGG PPP           NYGGAPP  N        
Sbjct: 291 GPRHPPPYGAPPQNNMGGPRPPQNYGGTPPP-----------NYGGAPPANNMGGAPPPN 339

Query: 334 -------SYGGALPPQNKYGGTPPPQNNYGGTAATAEQ 364
                   YG   PPQ  YGG PP  NNY    +  +Q
Sbjct: 340 YGGGPPPQYGAVPPPQ--YGGAPPQNNNYQQQGSGMQQ 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1

 Score =  134 bits (338), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 94/142 (66%), Gaps = 4/142 (2%)

Query: 97  TILLDGCDFEHWLVVMEKPEG-DPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHY 155
           TI+L GCD+ HWL+VME P+   PTR+++ID Y+ TLATV  G  +EA+  +Y+ ST  Y
Sbjct: 78  TIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVL-GSMEEAKKNMYAFSTTTY 136

Query: 156 YAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVPYD-PKYHEEWV 214
             F   V EETS K K LPGV WVLPDSY+DVKNKDYGG+ ++NG+ +P   P Y  +  
Sbjct: 137 TGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKQS 196

Query: 215 RNNA-RANERNRRNDRPRSYDR 235
           R++  ++    R+ D P +  R
Sbjct: 197 RSSKYKSKAYVRQRDGPPAEQR 218

Acts very early in chloroplast development, being required for expression of RNA polymerase beta subunit gene, and hence indirectly for subsequent expression of CAB and RBCS genes.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
225461632	421	PREDICTED: uncharacterized protein At3g1	0.874	0.812	0.553	5e-94
255566565	389	DAG protein, chloroplast precursor, puta	0.918	0.922	0.571	2e-92
449439063	410	PREDICTED: uncharacterized protein At3g1	0.713	0.680	0.603	2e-92
449522498	278	PREDICTED: uncharacterized protein At3g1	0.705	0.992	0.603	3e-92
297830050	396	hypothetical protein ARALYDRAFT_478926 [	0.833	0.823	0.604	1e-91
449451868	350	PREDICTED: uncharacterized protein At3g1	0.864	0.965	0.577	2e-88
356549679	401	PREDICTED: uncharacterized protein At3g1	0.797	0.778	0.616	2e-87
356544076	363	PREDICTED: uncharacterized protein At3g1	0.841	0.906	0.584	7e-86
18400602	395	cobalt ion binding protein [Arabidopsis	0.872	0.863	0.545	8e-86
115478064	398	Os09g0132600 [Oryza sativa Japonica Grou	0.470	0.462	0.807	2e-84

>gi|225461632|ref|XP_002285388.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial [Vitis vinifera]

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 226/408 (55%), Positives = 257/408 (62%), Gaps = 66/408 (16%)

Query: 19  ALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVRFGSGGIVTGPSARGMSTRPA 78
           A +SL+SRS      ++  S+ S     L R RPLS A       +    SAR  STR  
Sbjct: 14  AFSSLISRS----TPSLSLSTASCSTFSLLRLRPLSAAAVSVLRHLPQSTSARSFSTRQT 69

Query: 79  TASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDG 138
           ++SLND +PNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIID YIKTLA +  G
Sbjct: 70  SSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSYIKTLAMIV-G 128

Query: 139 REDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFI 198
            E+EARMKIYSVST+ Y+AFGALV EE S K+KELP VRWVLPDSYLDVKNKDYGGEPFI
Sbjct: 129 SEEEARMKIYSVSTRCYFAFGALVSEELSLKIKELPRVRWVLPDSYLDVKNKDYGGEPFI 188

Query: 199 NGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNFERRRENMQNRNFQ------ 252
           +G+AVPYDPKYHEEW+RNNARANERNRRNDRPR++DRSRNFERRRENMQNR+FQ      
Sbjct: 189 DGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNFERRRENMQNRDFQAPMQNS 248

Query: 253 -------------------------------------NQGMPNHAPNMSGMPPNNVPSSS 275
                                                N G P +  N  G PPNN   + 
Sbjct: 249 PPNMGGGPPPNMGGGPPPNMGGGPPPNMGMGGGPPSNNFGGPQN--NFRGGPPNNYGGAP 306

Query: 276 NMSPNMGSMSQNNLGGMPQNNYGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQNSY 335
             +   G+   N  GG P  NYGG  PP+NYGG  PP+N  G  PP +NYGG  PP N Y
Sbjct: 307 PSNYGGGAPPSNYGGGTPPGNYGGGAPPSNYGGGAPPSNIGGGAPP-SNYGGGAPPSN-Y 364

Query: 336 GGALPPQNKYGGTPP-------PQNNYGG-------TAATAEQLWRNA 369
           GG  PP N  GG PP       PQ+N+GG           ++Q W NA
Sbjct: 365 GGGAPPSNYGGGAPPNNYGGGMPQSNFGGGMPPNNAGGNASQQQWWNA 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566565|ref|XP_002524267.1| DAG protein, chloroplast precursor, putative [Ricinus communis] gi|223536458|gb|EEF38106.1| DAG protein, chloroplast precursor, putative [Ricinus communis]

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 236/413 (57%), Positives = 259/413 (62%), Gaps = 54/413 (13%)

Query: 1   MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVRFG 60
           MATQIFSR  L  PTA   + SLL RSFS+  T  KP+S  +   F    RPL+ A ++ 
Sbjct: 1   MATQIFSRSLLHKPTA---VFSLLCRSFSSLPT--KPTSPLVYRSFFRCLRPLAAASQYP 55

Query: 61  SGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT 120
                   S R  STR  T+SLND SPNWSNRPPKETILLDGCDF HWLVVMEKPEGDPT
Sbjct: 56  -----LSTSTRSFSTRTTTSSLNDPSPNWSNRPPKETILLDGCDFNHWLVVMEKPEGDPT 110

Query: 121 RDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVL 180
           RDEIID YIKTLA V  G E+EARMKIYSVST+ YYAFGALV EE SYK+KELP VRWVL
Sbjct: 111 RDEIIDSYIKTLAQVV-GSEEEARMKIYSVSTRCYYAFGALVSEELSYKIKELPRVRWVL 169

Query: 181 PDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNFE 240
           PDSYLDVKNKDYGGEPFI+G+AVPYDPKYHEEW+RNNARANERNRRNDRPR++DRSRN+E
Sbjct: 170 PDSYLDVKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNYE 229

Query: 241 RRRENMQNRNFQ----------------------NQGMPNHAPNMSGMPPNNVPSSSNMS 278
           RRRENMQNR+FQ                      NQGM N A NM+GMP NN+       
Sbjct: 230 RRRENMQNRDFQNTGPSPMGNQGMQNPASNMGMANQGMQNPASNMAGMPQNNMSGPGGPP 289

Query: 279 PNMGSMSQNNLGGMPQNNYGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPP---QNSY 335
           P   +         PQNNY G P P      PP NNY   PPP N  GG+PPP   +  Y
Sbjct: 290 PPPPNNYMGGPPPPPQNNYMGGPSP------PPQNNYXXTPPPNNYMGGSPPPTTTEQLY 343

Query: 336 GGALPPQNKYGGTPPPQNNYGGTAATAEQLWRNAATTEL----WRNTTTEQLW 384
           G         G        YG  A    Q  RNAA   L    W   T    W
Sbjct: 344 GSVT------GHGRIATEQYGKDA--TRQHRRNAAECRLVQHAWECATELSEW 388

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439063|ref|XP_004137307.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Cucumis sativus]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 186/308 (60%), Positives = 207/308 (67%), Gaps = 29/308 (9%)

Query: 1   MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVRFG 60
           MAT +FSR        T    S  SRSF T       +S       + R RPL+  +   
Sbjct: 1   MATHLFSRSL----PKTLIWTSTFSRSFLTATGAAISASSPSSSSLIRRLRPLAAILAAD 56

Query: 61  SGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT 120
                  PS R  STR  ++SLND +PNWSNRPPKETILLDGCDFEHWLVVMEKP+   T
Sbjct: 57  FRCHSAAPSLRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPDEQLT 116

Query: 121 RDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVL 180
           RDEIID YIKTLA V  G E+EARMKIYSVST+ Y+AFG LV EE SYK+KELP VRWVL
Sbjct: 117 RDEIIDSYIKTLAMVV-GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVL 175

Query: 181 PDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNFE 240
           PDSYLDVKNKDYGGEPFI+GQAVPYDPKYHEEW+RNNARANERN+RNDRPR+ DRSRNFE
Sbjct: 176 PDSYLDVKNKDYGGEPFIDGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNTDRSRNFE 235

Query: 241 RRRENMQNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGT 300
           RRRENMQNR+F N   P   PNMS   P                     GGMP NN+  +
Sbjct: 236 RRRENMQNRDFPN---PATGPNMSAPAP---------------------GGMPPNNFNPS 271

Query: 301 PPPNNYGG 308
            PP+N  G
Sbjct: 272 MPPHNRQG 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522498|ref|XP_004168263.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like, partial [Cucumis sativus]

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 184/305 (60%), Positives = 206/305 (67%), Gaps = 29/305 (9%)

Query: 1   MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVRFG 60
           MAT +FSR        T    S  SRSF T       +S       + R RPL+  +   
Sbjct: 1   MATHLFSRSL----PKTLIWTSTFSRSFLTATGAAISASSPSSSSLIRRLRPLAAILAAD 56

Query: 61  SGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT 120
                  PS R  STR  ++SLND +PNWSNRPPKETILLDGCDFEHWLVVMEKP+   T
Sbjct: 57  FRCHSAAPSLRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPDEQLT 116

Query: 121 RDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVL 180
           RDEIID YIKTLA V  G E+EARMKIYSVST+ Y+AFG LV EE SYK+KELP VRWVL
Sbjct: 117 RDEIIDSYIKTLAMVV-GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVL 175

Query: 181 PDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNFE 240
           PDSYLDVKNKDYGGEPFI+GQAVPYDPKYHEEW+RNNARANERN+RNDRPR+ DRSRNFE
Sbjct: 176 PDSYLDVKNKDYGGEPFIDGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNTDRSRNFE 235

Query: 241 RRRENMQNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGT 300
           RRREN+QNR+F N   P   PNMS   P                     GGMP NN+  +
Sbjct: 236 RRRENIQNRDFPN---PATGPNMSAPAP---------------------GGMPPNNFNPS 271

Query: 301 PPPNN 305
            PP+N
Sbjct: 272 MPPHN 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830050|ref|XP_002882907.1| hypothetical protein ARALYDRAFT_478926 [Arabidopsis lyrata subsp. lyrata] gi|297328747|gb|EFH59166.1| hypothetical protein ARALYDRAFT_478926 [Arabidopsis lyrata subsp. lyrata]

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 217/359 (60%), Positives = 250/359 (69%), Gaps = 33/359 (9%)

Query: 1   MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVR-F 59
           MAT   SR  L  P   K+L+ L +RSF+++A  +K  + SL    L+R RPL  A    
Sbjct: 1   MATHTISRSILCRPA--KSLSLLFTRSFASSAPLVKIPASSL----LSRSRPLVAAFSSV 54

Query: 60  GSGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDP 119
             GG+V   S +G+ST+  ++SLND +PNWSNRPPKETILLDGCDFEHWLVV+  PEGDP
Sbjct: 55  FRGGLV---SVKGLSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVNPPEGDP 111

Query: 120 TRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWV 179
           TRD+IID YIKTLA +  G EDEARMKIYSVST+ YYAFGALV E+ S+KLKELP VRWV
Sbjct: 112 TRDDIIDSYIKTLAQIV-GSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELPNVRWV 170

Query: 180 LPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNF 239
           LPDSYLDV+NKDYGGEPFI+G+AVPYDPKYHEEW+RNNARANERNRRNDRPR++DR+RNF
Sbjct: 171 LPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRTRNF 230

Query: 240 ERRRENM-----QNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQ 294
           ERRRENM       R       P      S  PP ++  S+   P+MG            
Sbjct: 231 ERRRENMAGGPPPQRPPMGGPPPPPHMGGSAPPPPHMGGSAPPPPHMG------------ 278

Query: 295 NNYGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQN 353
            NYGG PPPNN GG  PP NY G  PPQNN GG  PP N YGGA PP   YGG PP  N
Sbjct: 279 QNYGGPPPPNNMGGQRPPPNYGG--PPQNNMGGQRPPPN-YGGAPPP--NYGGAPPANN 332

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451868|ref|XP_004143682.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Cucumis sativus] gi|449531840|ref|XP_004172893.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Cucumis sativus]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 202/350 (57%), Positives = 234/350 (66%), Gaps = 12/350 (3%)

Query: 1   MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVRFG 60
           MATQ+F    L  P+    L+S+ +RSF  T      +S       L RFRPL       
Sbjct: 1   MATQLFVSRSL--PSKALILSSMFTRSFLATGGATISASSHSSFSLLRRFRPLVAIPAAD 58

Query: 61  SGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT 120
              +    + R  +TR A++SLND +PNWSNRPPKETILLDGCDFEHWL+VMEKP+   T
Sbjct: 59  FRRLSPALTVRDFATRVASSSLNDPNPNWSNRPPKETILLDGCDFEHWLIVMEKPDEQLT 118

Query: 121 RDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVL 180
           RDEIID YIKTLA V  G E+EARMKIYSVST+ Y+AFG LV EE SYK+KELP VRWVL
Sbjct: 119 RDEIIDSYIKTLAMVV-GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVL 177

Query: 181 PDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNFE 240
           PDSYLDVKNK YGGEPFI+GQAVPYDP YHEEW+RNNA+A ERN+R  RPR++DRSRNFE
Sbjct: 178 PDSYLDVKNKSYGGEPFIHGQAVPYDPMYHEEWIRNNAKAGERNKRIVRPRNFDRSRNFE 237

Query: 241 RRRENMQNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGT 300
            RREN+QNR F N   PN  P  +   P   P ++  SP     + N     P NN+ G 
Sbjct: 238 -RRENIQNREFPNAS-PNQPPPYNFNRPPPPPPNNYNSPPPPPNNFNRPPPPPPNNFKGP 295

Query: 301 PPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPP 350
           PPP+NYGG   PNNY G  P  NNYGG   P NS  G +P QN YGG  P
Sbjct: 296 PPPHNYGG-SQPNNYWGA-PQANNYGG---PSNS--GRMPAQNDYGGMQP 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549679|ref|XP_003543219.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Glycine max]

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 209/339 (61%), Positives = 233/339 (68%), Gaps = 27/339 (7%)

Query: 1   MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVRFG 60
           MATQI SR+F       K LA  LSRS ST      PS  SL  L   R   ++      
Sbjct: 1   MATQILSRIF------PKTLAPFLSRSLSTA-----PSPPSLSALSFLRRISVAANPSLH 49

Query: 61  SGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT 120
              +   PS R +STR  T+SLND +PNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT
Sbjct: 50  RALLPNSPSLRALSTRATTSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT 109

Query: 121 RDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVL 180
           RD+IID YIKTLA V  G E+EARMKIYSVST+HY+AFGALV EE SYK+KELPGVRWVL
Sbjct: 110 RDDIIDSYIKTLAKVI-GSEEEARMKIYSVSTRHYFAFGALVSEELSYKIKELPGVRWVL 168

Query: 181 PDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNFE 240
           PDSYL+VK KDYGGEPFINGQA PYDPKYHEEWVRNNARANERNRRNDRPR+ DRSRNFE
Sbjct: 169 PDSYLNVKEKDYGGEPFINGQAAPYDPKYHEEWVRNNARANERNRRNDRPRNADRSRNFE 228

Query: 241 RRRENMQNRNFQNQ---------GMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGG 291
           RRREN+ NR+ Q +                N +G PP+N  ++     N G    +N GG
Sbjct: 229 RRRENVVNRDMQGRPPSPNPGPNVGGPPPSNAAGYPPSN--AAGYPPSNAGYAPPSNTGG 286

Query: 292 MPQNNYGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPP 330
            P +N  G  PP+N GG PP N  AG  PP N  G APP
Sbjct: 287 YPPSN-AGYAPPSNAGGYPPSN--AGYAPPSNA-GYAPP 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544076|ref|XP_003540481.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Glycine max]

 Score =  323 bits (829), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 224/383 (58%), Positives = 244/383 (63%), Gaps = 54/383 (14%)

Query: 1   MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVRFG 60
           MATQI SR+F      T  LA  L RS +T      PS  SLP L   R   ++      
Sbjct: 1   MATQILSRIF----PKTLTLAPFLFRSLTTA-----PSRPSLPALSFLRRISVAANPSLR 51

Query: 61  SGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT 120
              +   PS R +STR  T+SLND +PNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT
Sbjct: 52  RVLLPNAPSLRALSTRATTSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT 111

Query: 121 RDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVL 180
           RD+IID YIKTLA V  G E+EARMKIYSVST+HY+AFGALV EE S KLKELPGVRWVL
Sbjct: 112 RDDIIDSYIKTLAKVI-GSEEEARMKIYSVSTRHYFAFGALVSEELSIKLKELPGVRWVL 170

Query: 181 PDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNFE 240
           PDSYL+VK KDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPR+ DRSRNFE
Sbjct: 171 PDSYLNVKEKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRNADRSRNFE 230

Query: 241 RRRENMQNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGT 300
           RRREN+ NR+ Q +                     N  PNMG    +N GG P NN GG 
Sbjct: 231 RRRENVVNRDMQGRP-----------------PMPNPGPNMGGPPPSNAGGYPPNNAGGY 273

Query: 301 PPPNNYGGMPPPNNYAGVPPPQNNYGGA-------------PPPQNSYGGALPPQNKYGG 347
            PPNN GG PP  N AG  PP  N GG                PQN+Y G +       G
Sbjct: 274 -PPNNAGGYPP--NNAGYAPP--NAGGGYPPNTGGGYGPGGGVPQNNYAGNM-------G 321

Query: 348 TPPPQNNYGGTAATAEQLWRNAA 370
            PPP  N GG    A   W N A
Sbjct: 322 GPPPNQNMGGFQPNAG--WSNNA 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400602|ref|NP_566496.1| cobalt ion binding protein [Arabidopsis thaliana] gi|25091502|sp|Q9LKA5.1|UMP1_ARATH RecName: Full=Uncharacterized protein At3g15000, mitochondrial gi|16226543|gb|AAL16196.1|AF428427_1 AT3g15000/K15M2_14 [Arabidopsis thaliana] gi|8777483|dbj|BAA97063.1| unnamed protein product [Arabidopsis thaliana] gi|53828643|gb|AAU94431.1| At3g15000 [Arabidopsis thaliana] gi|110740938|dbj|BAE98564.1| hypothetical protein [Arabidopsis thaliana] gi|332642080|gb|AEE75601.1| cobalt ion binding protein [Arabidopsis thaliana]

 Score =  323 bits (828), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 217/398 (54%), Positives = 250/398 (62%), Gaps = 57/398 (14%)

Query: 1   MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVR-F 59
           MAT   SR  L  P   K+L+ L +RSF+++A   K  + SL    L+R RPL  A    
Sbjct: 1   MATHTISRSILCRPA--KSLSFLFTRSFASSAPLAKSPASSL----LSRSRPLVAAFSSV 54

Query: 60  GSGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDP 119
             GG+V   S +G+ST+  ++SLND +PNWSNRPPKETILLDGCDFEHWLVV+E P+G+P
Sbjct: 55  FRGGLV---SVKGLSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEP 111

Query: 120 TRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWV 179
           TRDEIID YIKTLA +  G EDEARMKIYSVST+ YYAFGALV E+ S+KLKEL  VRWV
Sbjct: 112 TRDEIIDSYIKTLAQIV-GSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWV 170

Query: 180 LPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNF 239
           LPDSYLDV+NKDYGGEPFI+G+AVPYDPKYHEEW+RNNARANERNRRNDRPR+ DRSRNF
Sbjct: 171 LPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNNDRSRNF 230

Query: 240 ERRRENM-----QNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNN------ 288
           ERRRENM       R       P      S  PP ++  S+   P+MG            
Sbjct: 231 ERRRENMAGGPPPQRPPMGGPPPPPHIGGSAPPPPHMGGSAPPPPHMGQNYGPPPPNNMG 290

Query: 289 -------LGGMPQNNYGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQN-------- 333
                   G  PQNN GG  PP NYGG PPP           NYGGAPP  N        
Sbjct: 291 GPRHPPPYGAPPQNNMGGPRPPQNYGGTPPP-----------NYGGAPPANNMGGAPPPN 339

Query: 334 -------SYGGALPPQNKYGGTPPPQNNYGGTAATAEQ 364
                   YG   PPQ  YGG PP  NNY    +  +Q
Sbjct: 340 YGGGPPPQYGAVPPPQ--YGGAPPQNNNYQQQGSGMQQ 375

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115478064|ref|NP_001062627.1| Os09g0132600 [Oryza sativa Japonica Group] gi|47848437|dbj|BAD22293.1| putative plastid protein [Oryza sativa Japonica Group] gi|50726526|dbj|BAD34133.1| putative plastid protein [Oryza sativa Japonica Group] gi|113630860|dbj|BAF24541.1| Os09g0132600 [Oryza sativa Japonica Group] gi|125604798|gb|EAZ43834.1| hypothetical protein OsJ_28452 [Oryza sativa Japonica Group] gi|215766632|dbj|BAG98694.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 155/192 (80%), Positives = 168/192 (87%), Gaps = 8/192 (4%)

Query: 71  RGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDP-----TRDEII 125
           R  +T+PAT+SL DSSPNWSNRPPKETILLDGCDFEHWLVVM+ P GDP     TRDEII
Sbjct: 48  RCFATQPATSSLRDSSPNWSNRPPKETILLDGCDFEHWLVVMDPPPGDPSNPEPTRDEII 107

Query: 126 DRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYL 185
           D YIKTLA +  G EDEAR KIYSVST+HY+AFGALV EE SYKLKELP VRWVLPDSYL
Sbjct: 108 DGYIKTLAQIV-GSEDEARHKIYSVSTRHYFAFGALVSEELSYKLKELPKVRWVLPDSYL 166

Query: 186 DVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNFERRREN 245
           DV+NKDYGGEPFING+AVPYDPKYHEEWVRNNARANER RRNDRPR++DRSRNFERRREN
Sbjct: 167 DVRNKDYGGEPFINGEAVPYDPKYHEEWVRNNARANERTRRNDRPRNFDRSRNFERRREN 226

Query: 246 MQNRNFQNQGMP 257
           M   NFQN+ +P
Sbjct: 227 MH--NFQNRDVP 236

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
TAIR|locus:2086310	395	RIP1 "RNA-editing factor inter	0.606	0.6	0.573	5.2e-79
TAIR|locus:2083348	244	MORF3 "multiple organellar RNA	0.345	0.553	0.605	9.3e-43
TAIR|locus:2009625	271	AT1G53260 [Arabidopsis thalian	0.179	0.258	0.8	1.7e-34
TAIR|locus:2030200	192	AT1G72530 "AT1G72530" [Arabido	0.335	0.682	0.482	4.6e-34
TAIR|locus:2200131	232	MORF9 "multiple organellar RNA	0.368	0.620	0.493	1.5e-33
TAIR|locus:2051003	219	DAL1 "differentiation and gree	0.347	0.621	0.517	8.5e-33
TAIR|locus:2063389	232	MORF6 "multiple organellar RNA	0.329	0.556	0.530	8.5e-33
TAIR|locus:2206639	229	AT1G32580 "AT1G32580" [Arabido	0.485	0.829	0.405	3.7e-32
UNIPROTKB|Q2R8U1	374	Os11g0216400 "Os11g0216400 pro	0.294	0.307	0.470	1.4e-29
TAIR|locus:2119782	419	MORF1 "multiple organellar RNA	0.271	0.252	0.407	1.7e-23

TAIR|locus:2086310 RIP1 "RNA-editing factor interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
 Identities = 141/246 (57%), Positives = 166/246 (67%)

Query:     1 MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKXXXXXXXXXXXXXXXXXXTAVRFG 60
             MAT   SR  L  P   K+L+ L +RSF+++A   K                  +  R  
Sbjct:     1 MATHTISRSILCRPA--KSLSFLFTRSFASSAPLAKSPASSLLSRSRPLVAAFSSVFR-- 56

Query:    61 SGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT 120
              GG+V   S +G+ST+  ++SLND +PNWSNRPPKETILLDGCDFEHWLVV+E P+G+PT
Sbjct:    57 -GGLV---SVKGLSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEPT 112

Query:   121 RDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVL 180
             RDEIID YIKTLA +  G EDEARMKIYSVST+ YYAFGALV E+ S+KLKEL  VRWVL
Sbjct:   113 RDEIIDSYIKTLAQIV-GSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVL 171

Query:   181 PDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVXXXXXXXXXXXXXXXXXXXXXXXXFE 240
             PDSYLDV+NKDYGGEPFI+G+AVPYDPKYHEEW+                        FE
Sbjct:   172 PDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNNDRSRNFE 231

Query:   241 RRRENM 246
             RRRENM
Sbjct:   232 RRRENM 237

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2083348 MORF3 "multiple organellar RNA editing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 86/142 (60%), Positives = 107/142 (75%)

Query:    73 MSTRPATAS-----LNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDR 127
             +STRP T+      LND SPNWSNRPPKETILLDGCD+EHWL+VME  +  PT +E+I+ 
Sbjct:    57 ISTRPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFTDPKPTEEEMINS 116

Query:   128 YIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDV 187
             Y+KTL +V  G ++EA+ KIYSV T  Y  FGAL+ EE S K+K LPGV WVLPDSYLDV
Sbjct:   117 YVKTLTSVL-GWQEEAKKKIYSVCTSTYTGFGALISEELSCKVKALPGVLWVLPDSYLDV 175

Query:   188 KNKDYGGEPFINGQAVPYDPKY 209
              NKDYGG+ ++ G+ +P  P+Y
Sbjct:   176 PNKDYGGDLYVEGKVIPR-PQY 196

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

TAIR|locus:2009625 AT1G53260 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 56/70 (80%), Positives = 64/70 (91%)

Query:   145 MKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVP 204
             MKIYSVS K Y+AFGALV E+ S+K+KELP V+WVLPDSYLD KNKDYGGEPFI+G+AVP
Sbjct:     1 MKIYSVSHKCYFAFGALVSEDLSHKIKELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVP 60

Query:   205 YDPKYHEEWV 214
             YDPKYHEEW+
Sbjct:    61 YDPKYHEEWI 70

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2030200 AT1G72530 "AT1G72530" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 69/143 (48%), Positives = 100/143 (69%)

Query:    79 TASLNDSSPNWSN--RPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVF 136
             + S+N  + +WS   R P    L++GCD++HWLV+M+ P G PTR+ I+  +++TLA   
Sbjct:    29 SGSINSETTSWSELIRVPS---LVEGCDYKHWLVLMKPPNGYPTRNHIVQSFVETLAMAL 85

Query:   137 DGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYL-DVKNKDYG-- 193
              G E+EA+  IYSVSTK+YYAFG  + E  +YK++ LP V+WVLPDS++ D  N+ YG  
Sbjct:    86 -GSEEEAKRSIYSVSTKYYYAFGCRIHEPLTYKIRSLPDVKWVLPDSFIVDGDNR-YGVF 143

Query:   194 --GEPFINGQAVPYDPKYHEEWV 214
               GEPF++G+ VPYD KYH +W+
Sbjct:   144 FAGEPFVDGEVVPYDEKYHADWL 166

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2200131 MORF9 "multiple organellar RNA editing factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 75/152 (49%), Positives = 100/152 (65%)

Query:    64 IVTGPSARGMS-TRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGD-PTR 121
             I T  S R ++  + AT   + SS   ++   +ETI+L GCD+ HWL+VME P+   P+R
Sbjct:    45 ISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSR 104

Query:   122 DEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLP 181
             D++ID Y+ TLATV  G  +EA+  +Y+ ST  Y  F   +DEETS K K LPGV WVLP
Sbjct:   105 DQMIDTYLNTLATVL-GSMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLP 163

Query:   182 DSYLDVKNKDYGGEPFINGQAVP-----YDPK 208
             DSY+DVKNKDYGG+ +ING+ +P     Y PK
Sbjct:   164 DSYIDVKNKDYGGDKYINGEIIPCTYPTYQPK 195

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:1900865 "chloroplast RNA modification" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2051003 DAL1 "differentiation and greening-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 72/139 (51%), Positives = 98/139 (70%)

Query:    72 GMSTRPATASLNDSSPNWSNRPPKETI-LLDGCDFEHWLVVMEKPEGD-PTRDEIIDRYI 129
             G +   +T S  +S  N+S+RPP E   L  GCD+EHWL+VM+KP G+  T+ ++ID YI
Sbjct:    50 GANRSGSTYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 109

Query:   130 KTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKN 189
             +TLA V  G E+EA+ +IY+VS + Y  FG  +DEETS KL+ LPGV +VLPDSY+D +N
Sbjct:   110 QTLAKVV-GSEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPEN 168

Query:   190 KDYGGEPFINGQAVPYDPK 208
             KDYG E F+NG+ V   P+
Sbjct:   169 KDYGAELFVNGEIVQRSPE 187

GO:0003674 "molecular_function" evidence=ND

GO:0002103 "endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2063389 MORF6 "multiple organellar RNA editing factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 70/132 (53%), Positives = 93/132 (70%)

Query:    85 SSPNWSNRPPKETI-LLDGCDFEHWLVVMEKPEGDPT-RDEIIDRYIKTLATVFDGREDE 142
             S  N+S+RPP E   L  GCD+EHWL+VMEKP G+   + ++ID Y++TLA +  G E+E
Sbjct:    75 SGSNFSDRPPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIV-GSEEE 133

Query:   143 ARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQA 202
             AR KIY+VS + Y+ FG  +DEETS KL+ LPGV +VLPDSY+D + KDYG E F+NG+ 
Sbjct:   134 ARKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAELFVNGEV 193

Query:   203 VPYDPKYHEEWV 214
             VP  P+     V
Sbjct:   194 VPRPPERQRRMV 205

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2206639 AT1G32580 "AT1G32580" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 81/200 (40%), Positives = 115/200 (57%)

Query:    11 LSNPTATKALASLLSRSFSTTATTIKXXXXXXXXXXXXXXXXXXTAVRFGSGGIVTGPSA 70
             L+  TA++    L+S S +TT +                     +  RF +  I T    
Sbjct:     5 LARSTASRITKRLISTSGATTPSPSYILSRRSTPVFSHAVGFISSLNRFTT--IRTRMDR 62

Query:    71 RGMSTRPATASLNDSSPNWSNRPPKETI-LLDGCDFEHWLVVMEKPEGD-PTRDEIIDRY 128
              G S  P       S  N+S+R P E   L  GCD+EHWL+VM+KP G+  T+ ++ID Y
Sbjct:    63 SGGSYSPLK-----SGSNFSDRAPTEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCY 117

Query:   129 IKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVK 188
             ++TLA +  G E+EA+ KIY+VS + Y+ FG  +DEETS KL+ LPGV ++LPDSY+D +
Sbjct:   118 VQTLAKII-GSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFILPDSYVDQE 176

Query:   189 NKDYGGEPFINGQAVPYDPK 208
             NKDYG E F+NG+ V   P+
Sbjct:   177 NKDYGAELFVNGEIVQRPPE 196

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q2R8U1 Os11g0216400 "Os11g0216400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 286 (105.7 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 55/117 (47%), Positives = 78/117 (66%)

Query:    94 PKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTK 153
             P E IL +GCD+ HWL+ ME P+  PTR+E+I+ Y++TLA V  G  +EA+ ++Y+ ST 
Sbjct:    81 PDE-ILFEGCDYNHWLITMEFPDPKPTREEMIETYLQTLAKVV-GSYEEAKKRMYAFSTT 138

Query:   154 HYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYH 210
              Y  F A++ EE S K + LPGV ++LPDSYL  + K+YGG+ + NG   P  P  H
Sbjct:   139 TYVGFQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVITPRPPPVH 195

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

TAIR|locus:2119782 MORF1 "multiple organellar RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
 Identities = 44/108 (40%), Positives = 72/108 (66%)

Query:    95 KETILLDGCDFEHWLVVME--KPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVST 152
             ++T+L +GCD+ HWL+ M+  K E   + +E++  Y +T A       +EA+ ++Y+ ST
Sbjct:    77 EDTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYACST 136

Query:   153 KHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFING 200
               Y  F A++ E+ S K K+LPGV ++LPDSY+D +NK+YGG+ + NG
Sbjct:   137 TTYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGDKYENG 184

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

GO:1900865 "chloroplast RNA modification" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LKA5	UMP1_ARATH	No assigned EC number	0.5452	0.8721	0.8632	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027795001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (421 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	391
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.001
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	0.002

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 28/127 (22%), Positives = 35/127 (27%), Gaps = 30/127 (23%)

Query: 246 MQNRNFQNQGMPNHAPNMSGMPPNN---VPSSSNMSPNMGSMSQNNL-----GGMPQNNY 297
            +   F  QG P   P     P  +   V     +     + +Q  L        P    
Sbjct: 186 PRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQ 245

Query: 298 GGTPPPNNYGGMPPPNNYA-----------GVPPPQNNYGGAPPPQNSYGGALPPQNKYG 346
              P  +    MPPP                 PPPQN     P P         PQ +  
Sbjct: 246 PQFPGLSQ--QMPPPPPQPPQQQQQPPQPQAQPPPQNQ--PTPHPG-------LPQGQNA 294

Query: 347 GTPPPQN 353
             PPPQ 
Sbjct: 295 PLPPPQQ 301

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 28/120 (23%), Positives = 36/120 (30%), Gaps = 8/120 (6%)

Query: 241 RRRENMQNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGT 300
             R   Q +  Q Q   NH           V     M        Q N GG+  N     
Sbjct: 347 NMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQMVALGYLNIQGNQGGLGANPMQQG 406

Query: 301 PP-----PNNYGGMPPPNNYAGVPPPQNNYGGAP---PPQNSYGGALPPQNKYGGTPPPQ 352
            P     P+    +    +    P P     G P   PPQ+  GG +P       +P PQ
Sbjct: 407 QPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIPSPPALMPSPSPQ 466

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 20/55 (36%), Positives = 22/55 (40%)

Query: 297 YGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPP 351
           Y   PPP      PPP  Y   PPP  +     PP   Y    PP+  Y   PPP
Sbjct: 3   YKSPPPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPPP 57

Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
PF05922	82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	99.21
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.43
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	97.76
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	91.04
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	88.1
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	87.77

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.21  E-value=1.4e-11  Score=94.96  Aligned_cols=77  Identities=21%  Similarity=0.315  Sum_probs=56.8

Q ss_pred             EEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCc----hhhhhhheeeecCcceeeeeecCHHHHHHhcCCCCeEEEcCC
Q 016357          107 HWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGRE----DEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPD  182 (391)
Q Consensus       107 hYIVyMgkP~g~~t~~~~idsH~q~LASVL~GSe----EeAk~sIyYSYthsfnGFAAkLTeEEA~kLs~lPGVVSVfPD  182 (391)
                      .|||.|.....   .+...+.|.+++++++ .+.    ......++|+|+..|+||+|+||++++++|+++|+|.+|.||
T Consensus         1 ~YIV~~k~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D   76 (82)
T PF05922_consen    1 RYIVVFKDDAS---AASSFSSHKSWQASIL-KSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPD   76 (82)
T ss_dssp             EEEEEE-TTST---HHCHHHHHHHHHH-----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEE
T ss_pred             CEEEEECCCCC---cchhHHHHHHHHHHHH-hhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeC
Confidence            59999998643   2224667777777665 321    345778999999999999999999999999999999999999


Q ss_pred             CcccC
Q 016357          183 SYLDV  187 (391)
Q Consensus       183 s~l~L  187 (391)
                      ..+++
T Consensus        77 ~~v~l   81 (82)
T PF05922_consen   77 QVVSL   81 (82)
T ss_dssp             CEEEE
T ss_pred             ceEec
Confidence            98764

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.43  E-value=6.9e-07  Score=97.14  Aligned_cols=14  Identities=36%  Similarity=0.786  Sum_probs=9.0

Q ss_pred             hhccCccchhhccC
Q 016357           47 LNRFRPLSTAVRFG   60 (391)
Q Consensus        47 ~~~~~p~~~~~~~~   60 (391)
                      ..||+|++.+..|.
T Consensus       286 veRF~piv~gl~~~  299 (1102)
T KOG1924|consen  286 VERFRPIVEGLDFL  299 (1102)
T ss_pred             hhhhhhHHHHHhcc
Confidence            56777777666543

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=97.76  E-value=0.00014  Score=79.90  Aligned_cols=8  Identities=13%  Similarity=0.696  Sum_probs=3.5

Q ss_pred             Hhhhchhh
Q 016357          366 WRNAATTE  373 (391)
Q Consensus       366 w~n~~~~~  373 (391)
                      |.--.+++
T Consensus       631 W~kI~p~d  638 (1102)
T KOG1924|consen  631 WSKIVPRD  638 (1102)
T ss_pred             ccccCccc
Confidence            44444444

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=91.04  E-value=2.7  Score=43.91  Aligned_cols=87  Identities=14%  Similarity=0.135  Sum_probs=41.8

Q ss_pred             eEEEEEecCCCCC-CChHHHHHHHHHHHHHHcCCCchhhhhhheeeecCc-ceeeeeecCHHHHHHhcCCCCeEEEcCCC
Q 016357          106 EHWLVVMEKPEGD-PTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKH-YYAFGALVDEETSYKLKELPGVRWVLPDS  183 (391)
Q Consensus       106 ehYIVyMgkP~g~-~t~~~~idsH~q~LASVL~GSeEeAk~sIyYSYths-fnGFAAkLTeEEA~kLs~lPGVVSVfPDs  183 (391)
                      +.|-.|+|.--=. .+.+.+.+-|.-=|+.+       |..+.+..-+.+ --|||-..--.+|..-+-|    .+    
T Consensus        79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~-------~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~M----ei----  143 (498)
T KOG4849|consen   79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQF-------ADMKFFENRTNGQSKGYALLVLNSDAAVKQTM----EI----  143 (498)
T ss_pred             ceEEEEecceeEEeccHHHHHHHHhhhHHHH-------hhhhhhhcccCCcccceEEEEecchHHHHHHH----Hh----
Confidence            4567777765421 23332222232223333       445555555554 3588866544444322111    12    


Q ss_pred             cccCCCCCCCCCcccccccccCCchhhHHH
Q 016357          184 YLDVKNKDYGGEPFINGQAVPYDPKYHEEW  213 (391)
Q Consensus       184 ~l~L~nKdYgge~f~ng~~v~~~p~~~~~~  213 (391)
                         |..|.-.|..   =.+.+|.-.++.++
T Consensus       144 ---LP~k~iHGQ~---P~V~~~NK~~~ak~  167 (498)
T KOG4849|consen  144 ---LPTKTIHGQS---PTVLSYNKTNQAKL  167 (498)
T ss_pred             ---cccceecCCC---CeeeccchhhHHHH
Confidence               3344444533   46777777776653

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=88.10  E-value=5.2  Score=41.91  Aligned_cols=12  Identities=8%  Similarity=0.091  Sum_probs=6.3

Q ss_pred             eeeecCHHHHHH
Q 016357          158 FGALVDEETSYK  169 (391)
Q Consensus       158 FAAkLTeEEA~k  169 (391)
                      |.|+|...+++.
T Consensus       163 ~~ak~E~~~~K~  174 (498)
T KOG4849|consen  163 NQAKLEDAQAKN  174 (498)
T ss_pred             hHHHHHHHHhhh
Confidence            445555555544

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=87.77  E-value=4.9  Score=43.43  Aligned_cols=9  Identities=33%  Similarity=0.501  Sum_probs=4.1

Q ss_pred             CCCCCCCCC
Q 016357          264 SGMPPNNVP  272 (391)
Q Consensus       264 ~~~p~~~~~  272 (391)
                      +|+++++..
T Consensus       332 ~gnq~p~r~  340 (569)
T KOG3671|consen  332 GGNQPPNRS  340 (569)
T ss_pred             CCCCCCccc
Confidence            455544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	391
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-04
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	6e-04

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 57.1 bits (137), Expect = 5e-09
 Identities = 11/107 (10%), Positives = 19/107 (17%)

Query: 254 QGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGTPPPNNYGGMPPPN 313
           +  P                +  M P   + +  + G M     G  P       + P  
Sbjct: 7   RVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66

Query: 314 NYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGGTAA 360
                   Q          ++     P        P           
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 17/115 (14%), Positives = 23/115 (20%), Gaps = 4/115 (3%)

Query: 250 NFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGTPPPNNYGGM 309
             Q           +   P   P+++ MS     M               TP        
Sbjct: 13  QLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQ 72

Query: 310 PPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGGTAATAEQ 364
                 +      +N     P         P      GTP  Q      A    Q
Sbjct: 73  IDQATTSMNDMHLHNVPLVDPNAYMQ----PQVPVQMGTPLQQQQQPMAAPAYGQ 123

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 14/103 (13%), Positives = 19/103 (18%)

Query: 252 QNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGTPPPNNYGGMPP 311
                      M   P   VPS         +  Q +               +N   + P
Sbjct: 34  DPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDP 93

Query: 312 PNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNN 354
                   P Q         Q     A    +   G      N
Sbjct: 94  NAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.2 bits (119), Expect = 8e-07
 Identities = 13/121 (10%), Positives = 19/121 (15%), Gaps = 1/121 (0%)

Query: 247 QNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGTPPPNNY 306
           QN     Q      P        +                      P             
Sbjct: 18  QNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQAT 77

Query: 307 GGMPPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGGTAATAEQLW 366
             M   + +       N Y   P      G  L  Q +    P               + 
Sbjct: 78  TSMNDMHLHNVPLVDPNAYM-QPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136

Query: 367 R 367
           +
Sbjct: 137 Q 137

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 14/98 (14%), Positives = 19/98 (19%)

Query: 263 MSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGTPPPNNYGGMPPPNNYAGVPPPQ 322
           MS       P +        +  Q     MP  +           GMPP      +   Q
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 323 NNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGGTAA 360
                          A    N       P  +      
Sbjct: 61  FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 14/106 (13%), Positives = 23/106 (21%), Gaps = 3/106 (2%)

Query: 252 QNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGTPPPNNYGGMPP 311
           Q    P  A    G      P+   +   +   +         + +       N    P 
Sbjct: 44  QMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT---SMNDMHLHNVPLVDPNAYMQPQ 100

Query: 312 PNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGG 357
                G P  Q     A P       A+    +      P +    
Sbjct: 101 VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTE 146

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 17/115 (14%), Positives = 26/115 (22%), Gaps = 2/115 (1%)

Query: 245 NMQNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGTPPPN 304
            M                ++             + +M  M  +N   +   N    P   
Sbjct: 44  QMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHN-VPLVDPNAYMQPQVP 102

Query: 305 NYGGMPPPNNYAGVPPPQNNYGGAPPPQNSYG-GALPPQNKYGGTPPPQNNYGGT 358
              G P       +  P      A   QN      L P +     PPP  +    
Sbjct: 103 VQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLP 157

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.0 bits (103), Expect = 7e-05
 Identities = 10/81 (12%), Positives = 14/81 (17%), Gaps = 2/81 (2%)

Query: 284 MSQNNLGGMPQNNYGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQN 343
           MS +     PQ         N      P        P               G       
Sbjct: 1   MSHHKKRVYPQAQLQ--YGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ 58

Query: 344 KYGGTPPPQNNYGGTAATAEQ 364
           +   TP  +  +         
Sbjct: 59  QQFLTPAQEQLHQQIDQATTS 79

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 2/107 (1%)

Query: 252 QNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGTPPPNN--YGGM 309
            +Q +     +M+ M  +NVP     +     +       + Q       P        M
Sbjct: 69  LHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAM 128

Query: 310 PPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYG 356
                      P +     PPP        PP           +   
Sbjct: 129 GQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELS 175

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 297 YGGTPPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQ 352
            G TP P   G  PPP       PP    GG+PPP     G  PP +     PP  
Sbjct: 58  PGATPAPP--GAAPPPAAGGSPSPPA--DGGSPPP--PADGGSPPVDGGSPPPPST 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	391
2w2n_P	114	Proprotein convertase subtilisin/kexin type 9; hyd	99.44
2qtw_A	124	Proprotein convertase subtilisin/kexin type 9 Pro;	99.02
3cnq_P	80	Subtilisin BPN'; uncleaved, proenzyme, substrate c	98.97
1v5i_B	76	POIA1, IA-1=serine proteinase inhibitor; protease-	98.25
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	97.61
3t41_A	471	Epidermin leader peptide processing serine protea;	97.28
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	96.22
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	95.88
2z30_B	65	TK-subtilisin; thermococcus kodakaraensis, hydrola	94.45
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	94.44

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P

Probab=99.44  E-value=5.8e-14  Score=117.45  Aligned_cols=76  Identities=18%  Similarity=0.138  Sum_probs=64.7

Q ss_pred             eEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCchhhhhhheeeecCcceeeeeecCHHHHHHhcCCCCeEEEcCCCcc
Q 016357          106 EHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYL  185 (391)
Q Consensus       106 ehYIVyMgkP~g~~t~~~~idsH~q~LASVL~GSeEeAk~sIyYSYthsfnGFAAkLTeEEA~kLs~lPGVVSVfPDs~l  185 (391)
                      ..|||+|++..   + .+.++.|+++|.+++ ++ +.+...|+|+|++.|+||+|+||++++++|+++|+|++|+||..+
T Consensus        38 ~~YIV~lk~~~---~-~~~~~~h~~~l~s~~-~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v  111 (114)
T 2w2n_P           38 GTYVVVLKEET---H-LSQSERTARRLQAQA-AR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV  111 (114)
T ss_dssp             EEEEEEECTTC---C-HHHHHHHHHHHHHHH-HH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred             CcEEEEECCCC---C-HHHHHHHHHHHHHHh-hh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceE
Confidence            58999997632   2 345679999999999 55 336678999999999999999999999999999999999999887


Q ss_pred             cC
Q 016357          186 DV  187 (391)
Q Consensus       186 ~L  187 (391)
                      ++
T Consensus       112 ~~  113 (114)
T 2w2n_P          112 FA  113 (114)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P

Probab=99.02  E-value=3.1e-10  Score=96.75  Aligned_cols=76  Identities=18%  Similarity=0.133  Sum_probs=58.5

Q ss_pred             eEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCchhhhhhheeeecCcceeeeeecCHHHHHHhcCCCCeEEEcCCCcc
Q 016357          106 EHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYL  185 (391)
Q Consensus       106 ehYIVyMgkP~g~~t~~~~idsH~q~LASVL~GSeEeAk~sIyYSYthsfnGFAAkLTeEEA~kLs~lPGVVSVfPDs~l  185 (391)
                      ..|||+|.+.-.    ...++.|++.|.+++ .. ......|.|+|++.|+||+|+|+++++++|+++|+|++|+||..+
T Consensus        48 ~~YIV~~K~~~~----~~~~~~~~~~l~~~~-~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v  121 (124)
T 2qtw_A           48 GTYVVVLKEETH----LSQSERTARRLQAQA-AR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV  121 (124)
T ss_dssp             EEEEEEECTTCC----HHHHHHHHHHHHHHH-HH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred             CCEEEEECCCCC----HHHHHHHHHHHHHHH-hh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceE
Confidence            479999976322    235667777777654 10 001237999999999999999999999999999999999999876


Q ss_pred             cC
Q 016357          186 DV  187 (391)
Q Consensus       186 ~L  187 (391)
                      +.
T Consensus       122 ~a  123 (124)
T 2qtw_A          122 FA  123 (124)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B

Probab=98.97  E-value=6.7e-10  Score=85.86  Aligned_cols=68  Identities=16%  Similarity=0.086  Sum_probs=52.1

Q ss_pred             eEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCchhhhhhheeeecCcceeeeeecCHHHHHHhcCCCCeEEEcCCCcc
Q 016357          106 EHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYL  185 (391)
Q Consensus       106 ehYIVyMgkP~g~~t~~~~idsH~q~LASVL~GSeEeAk~sIyYSYthsfnGFAAkLTeEEA~kLs~lPGVVSVfPDs~l  185 (391)
                      ..|||+|.+...   .+.+   |..++. -+       ..+|+|+|++ |+||+|+|+++++++|+++|+|++|.||..+
T Consensus         9 ~~YIV~~k~~~~---~~~~---~~~~~~-~~-------g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v   73 (80)
T 3cnq_P            9 KKYIVGFKQGFK---SCAK---KEDVIS-EK-------GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLY   73 (80)
T ss_dssp             CEEEEEECTTCC---SHHH---HHHHHH-TT-------TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEE
T ss_pred             CCEEEEECCCCC---hHHH---HHHHHH-Hc-------CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEE
Confidence            579999976433   1211   223222 22       2469999998 9999999999999999999999999999988


Q ss_pred             cCC
Q 016357          186 DVK  188 (391)
Q Consensus       186 ~L~  188 (391)
                      ++.
T Consensus        74 ~~~   76 (80)
T 3cnq_P           74 RAL   76 (80)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            764

>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A

Probab=98.25  E-value=2.9e-06  Score=65.94  Aligned_cols=70  Identities=11%  Similarity=0.134  Sum_probs=56.3

Q ss_pred             eEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCchhhhhhheeee-cCcceeeeeecCHHHHHHhcCC--CCeEEEcCC
Q 016357          106 EHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVS-TKHYYAFGALVDEETSYKLKEL--PGVRWVLPD  182 (391)
Q Consensus       106 ehYIVyMgkP~g~~t~~~~idsH~q~LASVL~GSeEeAk~sIyYSY-thsfnGFAAkLTeEEA~kLs~l--PGVVSVfPD  182 (391)
                      ..|||.|.+.    ...+.++.|.+++...- |       .|.|.| ...|+||+|.|++++++.|+..  |.|..|-+|
T Consensus         3 ~sYIV~lk~~----~~~~~~~~~~~~~~~~g-g-------~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D   70 (76)
T 1v5i_B            3 GKFIVIFKND----VSEDKIRETKDEVIAEG-G-------TITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED   70 (76)
T ss_dssp             EEEEEEECTT----CCHHHHHHHHHHHHHHT-C-------CCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred             ceEEEEECCC----CCHHHHHHHHHHHHhhC-C-------ceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence            4799999542    23446778887776643 3       488999 5899999999999999999999  889999999


Q ss_pred             CcccC
Q 016357          183 SYLDV  187 (391)
Q Consensus       183 s~l~L  187 (391)
                      ..+.+
T Consensus        71 ~~v~~   75 (76)
T 1v5i_B           71 HVAHA   75 (76)
T ss_dssp             CEEEC
T ss_pred             cEEeC
Confidence            87654

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=97.61  E-value=7.6e-05  Score=79.33  Aligned_cols=75  Identities=19%  Similarity=0.150  Sum_probs=54.9

Q ss_pred             EEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCchhhhhhheeeecCcceeeeeecCHHHHHHhcCCCCeEEEcCCCccc
Q 016357          107 HWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLD  186 (391)
Q Consensus       107 hYIVyMgkP~g~~t~~~~idsH~q~LASVL~GSeEeAk~sIyYSYthsfnGFAAkLTeEEA~kLs~lPGVVSVfPDs~l~  186 (391)
                      .|||.|.+...   .+ ..+.|++.|.+.+ ... ....+|+|+|++.|+||+++|+++++++|+++|+|.+|.||..+.
T Consensus        77 ~YIV~lk~~~~---~~-~~~~~~~~l~a~~-~~~-g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~  150 (692)
T 2p4e_P           77 TYVVVLKEETH---LS-QSERTARRLQAQA-ARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVF  150 (692)
T ss_dssp             EEEEEECTTCC---HH-HHHHHHHHHHHHH-HHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEE
T ss_pred             cEEEEECCCCC---HH-HHHHHHHHHHHHH-hhc-ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccc
Confidence            89999976332   22 3444555554433 000 012368999999999999999999999999999999999998664


Q ss_pred             C
Q 016357          187 V  187 (391)
Q Consensus       187 L  187 (391)
                      +
T Consensus       151 ~  151 (692)
T 2p4e_P          151 A  151 (692)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=97.28  E-value=0.00022  Score=70.14  Aligned_cols=93  Identities=5%  Similarity=0.131  Sum_probs=57.3

Q ss_pred             ccccccCCCceEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCchhhhhhheeeecCcceeeeeecCHHHHHHhcC-CC
Q 016357           96 ETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKE-LP  174 (391)
Q Consensus        96 ~~~L~~gcd~ehYIVyMgkP~g~~t~~~~idsH~q~LASVL~GSeEeAk~sIyYSYthsfnGFAAkLTeEEA~kLs~-lP  174 (391)
                      +.+.+.|-+-+.|||.+...      +    .    +.+++    ++...+++|.|.. |+||+++|+++++++|++ +|
T Consensus        35 ~~l~~~~~~~~~yiv~~~~~------~----~----~~~~~----~~~g~~v~~~~~~-~~~~~~~~~~~~~~~L~~~~p   95 (471)
T 3t41_A           35 ENLYFQGSEELYYSVEYKNT------A----T----FNKLV----KKKSLNVVYNIPE-LHVAQIKMTKMHANALANYKN   95 (471)
T ss_dssp             --------CCEEEEEEESCH------H----H----HHHHH----HHHTCEEEEEEGG-GTEEEEEECHHHHHHHHTCTT
T ss_pred             ccceecCCCceEEEEEcCCH------H----H----HHHHH----HhCCCEEEEecCC-ccEEEEEeCHHHHHHHHhcCC
Confidence            34456677777899954331      1    1    22233    2333557888854 999999999999999999 99


Q ss_pred             CeEEEcCCCcccCCCCCCCCCcccccccccCCchhhHHHH
Q 016357          175 GVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWV  214 (391)
Q Consensus       175 GVVSVfPDs~l~L~nKdYgge~f~ng~~v~~~p~~~~~~~  214 (391)
                      +|++|.|+..+++....-       -...+.+|.+...|-
T Consensus        96 ~V~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~w~  128 (471)
T 3t41_A           96 DIKYINATCSTCITSEKT-------IDRTSNESLFSRQWD  128 (471)
T ss_dssp             TEEEEEECCSSCBCCCCC-------CCC---CCSCCCCHH
T ss_pred             CCcEEEecceeccccccc-------cccCCCCcccccccc
Confidence            999999999887754221       134456677666663

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=96.22  E-value=0.0031  Score=61.19  Aligned_cols=43  Identities=26%  Similarity=0.054  Sum_probs=38.9

Q ss_pred             hhheeeecCcceeeeeecCHHHHHHhcCCCCeEEEcCCCcccCC
Q 016357          145 MKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVK  188 (391)
Q Consensus       145 ~sIyYSYthsfnGFAAkLTeEEA~kLs~lPGVVSVfPDs~l~L~  188 (391)
                      .++++.|.. |+||+++|+++++++|+++|+|.+|.||..+++.
T Consensus        24 ~~v~~~~~~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~   66 (395)
T 2z2z_A           24 GHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLL   66 (395)
T ss_dssp             CEEEEECSS-SSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEEC
T ss_pred             CEEEEEecc-CCEEEEEECHHHHHHHHcCCCceEEEEeeeeccc
Confidence            457888875 9999999999999999999999999999988764

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=95.88  E-value=0.0055  Score=62.55  Aligned_cols=43  Identities=19%  Similarity=0.198  Sum_probs=38.3

Q ss_pred             hhheeeecCcceeeeeecCHHHHHHh-----------cCCCCeEEEcCCCcccCC
Q 016357          145 MKIYSVSTKHYYAFGALVDEETSYKL-----------KELPGVRWVLPDSYLDVK  188 (391)
Q Consensus       145 ~sIyYSYthsfnGFAAkLTeEEA~kL-----------s~lPGVVSVfPDs~l~L~  188 (391)
                      .+|+|.|+ .|+||+++|+++++++|           +++|+|.+|.+|..+++.
T Consensus        60 ~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~  113 (539)
T 3afg_A           60 AKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVA  113 (539)
T ss_dssp             CEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC
T ss_pred             CeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEeccccccc
Confidence            35789996 69999999999999999           899999999999887664

>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B

Probab=94.45  E-value=0.025  Score=42.65  Aligned_cols=45  Identities=24%  Similarity=0.005  Sum_probs=38.5

Q ss_pred             hhhhhhheeeecCcceeeeeecCHHHHHHhcCCCCeEEEcCCCccc
Q 016357          141 DEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLD  186 (391)
Q Consensus       141 EeAk~sIyYSYthsfnGFAAkLTeEEA~kLs~lPGVVSVfPDs~l~  186 (391)
                      +...-+|+|.|.. +++++|.|+++.+++|+++|||..|-+|...+
T Consensus        19 ~~~gG~i~~~~~~-I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~   63 (65)
T 2z30_B           19 LGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV   63 (65)
T ss_dssp             GGGTCEEEEECSS-SSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred             HHCCCEEEEEecC-CcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence            3345568888855 99999999999999999999999999997654

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=94.44  E-value=0.0069  Score=56.90  Aligned_cols=8  Identities=38%  Similarity=0.779  Sum_probs=3.8

Q ss_pred             CchhhHHH
Q 016357          206 DPKYHEEW  213 (391)
Q Consensus       206 ~p~~~~~~  213 (391)
                      ..+|+++.
T Consensus       319 ~~~fR~~~  326 (448)
T 2z73_A          319 HPKFREAI  326 (448)
T ss_dssp             CHHHHHHH
T ss_pred             hHHHHHHH
Confidence            44555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	391
d1vhka1	72	b.122.1.2 (A:2-73) Hypothetical protein YqeU {Baci	0.001

>d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} Length = 72

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: YggJ N-terminal domain-like
domain: Hypothetical protein YqeU
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 13/59 (22%)

Query: 96  ETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKH 154
            T  + G +  H + VM   EG    D+II                EA+ ++ SVS   
Sbjct: 16  PTFSITGEEVHHIVNVMRMNEG----DQII---------CCSQDGFEAKCELQSVSKDK 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	391
d1v5ib1	72	Proteinase A inhibitor 1, POIA1 {Oyster mushroom (	98.04
d1scjb_	71	Subtilisin prosegment {Bacillus subtilis [TaxId: 1	97.93

>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Proteinase A inhibitor 1, POIA1
species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]

Probab=98.04  E-value=5.3e-06  Score=62.68  Aligned_cols=65  Identities=12%  Similarity=0.161  Sum_probs=50.3

Q ss_pred             EEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCchhhhhhheeeec-CcceeeeeecCHHHHHHhcCCCC--eEEEcCCC
Q 016357          107 HWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVST-KHYYAFGALVDEETSYKLKELPG--VRWVLPDS  183 (391)
Q Consensus       107 hYIVyMgkP~g~~t~~~~idsH~q~LASVL~GSeEeAk~sIyYSYt-hsfnGFAAkLTeEEA~kLs~lPG--VVSVfPDs  183 (391)
                      .|||+|.+-   . ....++.|..++.+.-        ..+.+.|. +.|+||+|+|++++++.|+.+|+  |-.|-+|.
T Consensus         4 ~YIVvlK~~---~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~   71 (72)
T d1v5ib1           4 KFIVIFKND---V-SEDKIRETKDEVIAEG--------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH   71 (72)
T ss_dssp             EEEEEECTT---C-CHHHHHHHHHHHHHHT--------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred             cEEEEECCC---C-CHHHHHHHHHHHHhcC--------CceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence            699999872   2 2345677777766654        23667776 79999999999999999999776  99998775

>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Subtilisin prosegment
species: Bacillus subtilis [TaxId: 1423]

Probab=97.93  E-value=4.6e-06  Score=62.94  Aligned_cols=68  Identities=18%  Similarity=0.143  Sum_probs=51.1

Q ss_pred             eEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCchhhhhhheeeecCcceeeeeecCHHHHHHhcCCCCeEEEcCCCcc
Q 016357          106 EHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYL  185 (391)
Q Consensus       106 ehYIVyMgkP~g~~t~~~~idsH~q~LASVL~GSeEeAk~sIyYSYthsfnGFAAkLTeEEA~kLs~lPGVVSVfPDs~l  185 (391)
                      +.|||.+.+.-. ..   ..+.+.+++.+.-        .+|.+.|. .|+||+|+|+++++++|+..|+|..|-+|..+
T Consensus         2 ~~YIV~fK~~~~-~~---~~~~~~~~v~~~g--------g~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~   68 (71)
T d1scjb_           2 KKYIVGFKQTMS-AM---SSAKKKDVISQKG--------GKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIA   68 (71)
T ss_dssp             EEEEEEECSSSS-CC---SHHHHHHHHHTTT--------CEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEE
T ss_pred             CcEEEEECCCCC-hH---HHHHHHHHHHHcC--------CeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEE
Confidence            579999987533 11   2334444444332        35788887 59999999999999999999999999999875


Q ss_pred             c
Q 016357          186 D  186 (391)
Q Consensus       186 ~  186 (391)
                      +
T Consensus        69 ~   69 (71)
T d1scjb_          69 H   69 (71)
T ss_dssp             E
T ss_pred             E
Confidence            4