Citrus Sinensis ID: 016367

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
MENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPIIYHARASTRDPCLILHYDSPIQNKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANGALVSYNPENEELKDLVIFDPPKWFCSIVHVESLFLVEAILGIGA
cccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEccccccEEEEEEccccccccccccEEEcccccccccccEEEEEEEccEEEEEEccccccEEEEEcccccEEEcccccccccccEEEEEEEEcccccEEEEEEEEEccccccccccccccccEEEEEEcccccEEEEEcccccccccccccEEEcccEEEEEEEcccccccccEEEEEEccccEEEEEccccccccccccEEEEEEccEEEEEEEccccEEEEEEEEEccccccEEEEEEEccccccccccccccHHHHHHHccccccccEEEEEccccEEEEEEEccEEEEEEccccEEEEEEEccccccEEEEEEEcccccccccccccc
cccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEEccEEEEEEEEccccccccccccccEEEcccccccccEEEEEEcccEEEEEEEcccccEEEEEccccccEEEEcccccccccEEEEEEEEccccccEEEEEEEEcccccccccccccccccEEEEEEEcccccEEEEEccccccccccccEEEEcEEEEEEEEEcccccccEEEEEEEccccccccccccccccccccEEEEEEEccEEEEEEEccccEEEEEEEEcccccEEEEEEEEEccccccccccccccEEEEEEEEEEcEEEEEEEEEEcccEEEEEccccEEEEEEccccEEEEEEEcccccccEEEEEcccEEEEcccccccc
MENLPLDVALDILSRLPITALVRTKCVCRTwqalaqdprlpiiyharastrdpclilhydspiqnklcfvsingdnpdqdgsrvrrIDARVNSIMAEYQVVGScngllcvsdalyfnpiivcnpftgSYLELAKATQHAQEELafgfgcnsstmeYKVVRIVFNFNTyrslrdrgwprksdvEVLTVGIdhtwrylgpvpwrlnpgasealLNGSLHWVTMryknnpgprlrimsfdlaeedfgeiglpdcgslsvcnFHLVVLRGCLsavhclddkgMEIWIMKEYKVReswskdyiigtylpaslrenaRPHLEMLkksglgrgssqvvcdwknGEILLEYANGalvsynpeneelkdlvifdppkwfcsIVHVESLFLVEAILGIGA
MENLPLDVALDILSRLPITALVRTKCVCRTwqalaqdprlpIIYHARASTRDPCLILHYDSPIQNKLCFVSINgdnpdqdgsrvrRIDARVNSIMAEYQVVGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTyrslrdrgwprksdvEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYkvreswskdYIIGTYLPASLRENARPHLEMLKksglgrgssQVVCDWKNGEILLEYANGALVSYNPENEELKDLVIFDPPKWFCSIVHVESLFLVEAILGIGA
MENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPIIYHARASTRDPCLILHYDSPIQNKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANGALVSYNPENEELKDLVIFDPPKWFCSIVHVESLFLVEAILGIGA
*****LDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPIIYHARASTRDPCLILHYDSPIQNKLCFVSING*********VRRIDARVNSIMAEYQVVGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRE***************RGSSQVVCDWKNGEILLEYANGALVSYNPENEELKDLVIFDPPKWFCSIVHVESLFLVEAILGI**
MENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPIIYHARASTRDPCLILHYDSPIQNKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANGALVSYNPENEELKDLVIFDPPKWFCSIVHVESLFLVEAILG***
MENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPIIYHARASTRDPCLILHYDSPIQNKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANGALVSYNPENEELKDLVIFDPPKWFCSIVHVESLFLVEAILGIGA
*ENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPIIYHARASTRDPCLILHYDSPIQNKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANGALVSYNPENEELKDLVIFDPPKWFCSIVHVESLFLVEAIL****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPIIYHARASTRDPCLILHYDSPIQNKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANGALVSYNPENEELKDLVIFDPPKWFCSIVHVESLFLVEAILGIGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query390 2.2.26 [Sep-21-2011]
Q9SFC7417 F-box protein At3g07870 O yes no 0.946 0.884 0.414 2e-74
Q9SU30413 F-box protein CPR30 OS=Ar no no 0.879 0.830 0.267 4e-18
Q8GXC7427 F-box/kelch-repeat protei no no 0.858 0.784 0.252 4e-16
Q9LIR8364 F-box/kelch-repeat protei no no 0.682 0.730 0.254 2e-15
Q9FZF8389 Putative F-box protein At no no 0.761 0.763 0.246 6e-15
Q9FK54379 F-box protein At5g18160 O no no 0.666 0.686 0.249 9e-14
O64598377 Putative F-box protein At no no 0.715 0.740 0.273 1e-13
Q9SAB5363 Putative F-box/LRR-repeat no no 0.748 0.804 0.251 1e-12
Q9LUP7381 Putative F-box protein At no no 0.676 0.692 0.270 9e-12
Q9FGY4359 F-box protein At5g49610 O no no 0.674 0.732 0.262 1e-11
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function desciption
 Score =  280 bits (715), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/393 (41%), Positives = 243/393 (61%), Gaps = 24/393 (6%)

Query: 1   MENLPLDVALDILSRLPITALVRTKCVCRTWQA-LAQDPRLPIIYHARASTRDPCLILHY 59
           +E+LP D+  DI SRLPI+++ R   VCR+W++ L Q  RL     + +S   PCL+LH 
Sbjct: 25  LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSS---SSSSPTKPCLLLHC 81

Query: 60  DSPIQNKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVGSCNGLLCVSDALYFNPI 119
           DSPI+N L F+ ++    ++   + ++   R  S M E+ VVGSCNGLLC+SD+LY + +
Sbjct: 82  DSPIRNGLHFLDLS---EEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSL 138

Query: 120 IVCNPFTGSYLELAK-ATQHAQEELAFGFGCNSSTMEYKVVRIVF-------NFNTYRSL 171
            + NPFT + LEL + + ++  +EL FGFG +  T EYKV++IV+       N   YR  
Sbjct: 139 YLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRG- 197

Query: 172 RDRGWPRKSDVEVLTVGIDHT-----WRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNN 226
           R R   ++S+V++LT+    T     WR LG  P++    +SEAL+NG LH+VT   ++ 
Sbjct: 198 RGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHV 257

Query: 227 PGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKE 286
           P  +   +SFDL +E+F EI  PDCG L+  N  LV L+GCL AV   +   ++IW+MK 
Sbjct: 258 PDRKF--VSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKT 315

Query: 287 YKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANG 346
           Y V+ESW K+Y IGTYLP  L++N    + + K +  G+   +V+C  +NGEILLEY + 
Sbjct: 316 YGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGK-VVRVLCLLENGEILLEYKSR 374

Query: 347 ALVSYNPENEELKDLVIFDPPKWFCSIVHVESL 379
            LV+Y+P+  + KDL+    P WF ++VH  +L
Sbjct: 375 VLVAYDPKLGKFKDLLFHGLPNWFHTVVHAGTL 407

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function description
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description
>sp|Q9FZF8|FB44_ARATH Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1 Back     alignment and function description
>sp|Q9FK54|FB260_ARATH F-box protein At5g18160 OS=Arabidopsis thaliana GN=At5g18160 PE=2 SV=1 Back     alignment and function description
>sp|O64598|FB82_ARATH Putative F-box protein At1g70380 OS=Arabidopsis thaliana GN=At1g70380 PE=4 SV=1 Back     alignment and function description
>sp|Q9SAB5|FBLK2_ARATH Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana GN=At1g11620 PE=4 SV=1 Back     alignment and function description
>sp|Q9LUP7|FB154_ARATH Putative F-box protein At3g17500 OS=Arabidopsis thaliana GN=At3g17500 PE=4 SV=1 Back     alignment and function description
>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
224129122422 f-box family protein [Populus trichocarp 0.953 0.881 0.492 5e-95
224064862408 f-box family protein [Populus trichocarp 0.941 0.899 0.492 4e-93
225447272409 PREDICTED: F-box protein At3g07870 [Viti 0.958 0.914 0.465 2e-82
297829344415 F-box family protein [Arabidopsis lyrata 0.966 0.908 0.405 2e-73
18398079417 F-box protein [Arabidopsis thaliana] gi| 0.946 0.884 0.414 1e-72
449445682375 PREDICTED: F-box protein At3g07870-like 0.948 0.986 0.417 9e-70
255588135383 conserved hypothetical protein [Ricinus 0.948 0.966 0.368 4e-61
255552822401 conserved hypothetical protein [Ricinus 0.966 0.940 0.368 6e-61
255583018410 conserved hypothetical protein [Ricinus 0.946 0.9 0.413 2e-57
255583020263 conserved hypothetical protein [Ricinus 0.638 0.946 0.441 4e-52
>gi|224129122|ref|XP_002320506.1| f-box family protein [Populus trichocarpa] gi|222861279|gb|EEE98821.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 194/394 (49%), Positives = 260/394 (65%), Gaps = 22/394 (5%)

Query: 1   MENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPIIYHARASTRD---PCLIL 57
           ME LP ++A DILSRLPIT+LV+ KCVCR W+AL QDP+L  +Y +  ST+D   PCLIL
Sbjct: 25  MELLPREIAHDILSRLPITSLVQFKCVCRAWRALVQDPQLVDLYLS-CSTQDTDHPCLIL 83

Query: 58  HYDSPIQNKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVGSCNGLLCVSDALYFN 117
           H D PI+N L FV       +++  +V+RI A  +S+M E++VVGSCNGLLC+SD+LY +
Sbjct: 84  HCDFPIRNNLYFVDFAAH--EEEKEKVKRIPAPFSSMMPEFEVVGSCNGLLCLSDSLYND 141

Query: 118 PIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWP 177
            + + NPFTG Y EL K+ Q+  +E+  GFG N  T EYKV+RIV+  N +      G+P
Sbjct: 142 SLYIYNPFTGCYKELPKSLQYPDQEVVSGFGFNPKTKEYKVIRIVYYRNGHG-----GYP 196

Query: 178 RK-------SDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPR 230
           R        S+V++LT+G    WR LG V +RL   AS AL+NG LHW++   +N P  R
Sbjct: 197 RSRRIIYPLSEVQILTLGCPE-WRSLGKVSYRLVRRASGALVNGRLHWISRPCRNKPARR 255

Query: 231 LRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVR 290
           L  +SFDL +E F E+  PDCG L+ CN+HLVVLRGCLSA    +   +EIW+MKEY V+
Sbjct: 256 L--VSFDLTDEQFREVSKPDCGGLNRCNYHLVVLRGCLSAAVYCNYGRLEIWVMKEYNVK 313

Query: 291 ESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANGALVS 350
           ESW K+Y IG Y+P  L++N    L++ K S  GR     +C  KNGEILLEY N  LVS
Sbjct: 314 ESWVKEYNIGAYMPKGLKQNQDRQLKIWKNSSNGRVVG-ALCVLKNGEILLEYKNRVLVS 372

Query: 351 YNPENEELKDLVIFDPPKWFCSIVHVESLFLVEA 384
           Y+P+N + KD+ +   P WF ++VHV SL  ++ 
Sbjct: 373 YDPKNGKFKDIELQGAPNWFQTVVHVGSLNWIDT 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224064862|ref|XP_002301588.1| f-box family protein [Populus trichocarpa] gi|222843314|gb|EEE80861.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225447272|ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera] gi|147785390|emb|CAN68678.1| hypothetical protein VITISV_041941 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297829344|ref|XP_002882554.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297328394|gb|EFH58813.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18398079|ref|NP_566322.1| F-box protein [Arabidopsis thaliana] gi|75265789|sp|Q9SFC7.1|FB135_ARATH RecName: Full=F-box protein At3g07870 gi|6648199|gb|AAF21197.1|AC013483_21 unknown protein [Arabidopsis thaliana] gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21 [Arabidopsis thaliana] gi|109134141|gb|ABG25068.1| At3g07870 [Arabidopsis thaliana] gi|332641092|gb|AEE74613.1| F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449445682|ref|XP_004140601.1| PREDICTED: F-box protein At3g07870-like [Cucumis sativus] gi|449519392|ref|XP_004166719.1| PREDICTED: F-box protein At3g07870-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255588135|ref|XP_002534512.1| conserved hypothetical protein [Ricinus communis] gi|223525141|gb|EEF27869.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255552822|ref|XP_002517454.1| conserved hypothetical protein [Ricinus communis] gi|223543465|gb|EEF44996.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255583018|ref|XP_002532277.1| conserved hypothetical protein [Ricinus communis] gi|223528011|gb|EEF30092.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255583020|ref|XP_002532278.1| conserved hypothetical protein [Ricinus communis] gi|223528012|gb|EEF30093.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.946 0.884 0.414 1.8e-71
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.494 0.451 0.292 2.1e-17
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.692 0.741 0.259 6.6e-17
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.887 0.837 0.277 7.4e-17
TAIR|locus:2016149377 AT1G70380 "AT1G70380" [Arabido 0.712 0.737 0.281 3e-14
TAIR|locus:2203708408 AT1G53550 "AT1G53550" [Arabido 0.735 0.703 0.252 1.8e-13
TAIR|locus:2027397363 AT1G11620 "AT1G11620" [Arabido 0.748 0.804 0.257 1e-12
TAIR|locus:2100524390 AT3G52320 "AT3G52320" [Arabido 0.866 0.866 0.252 6.3e-12
TAIR|locus:2197021461 AT1G53790 [Arabidopsis thalian 0.912 0.772 0.227 9.5e-12
TAIR|locus:2087877378 AT3G22350 "AT3G22350" [Arabido 0.717 0.740 0.259 1.3e-11
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 163/393 (41%), Positives = 243/393 (61%)

Query:     1 MENLPLDVALDILSRLPITALVRTKCVCRTWQA-LAQDPRLPIIYHARASTRDPCLILHY 59
             +E+LP D+  DI SRLPI+++ R   VCR+W++ L Q  RL     + +S   PCL+LH 
Sbjct:    25 LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLS---SSSSSPTKPCLLLHC 81

Query:    60 DSPIQNKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVGSCNGLLCVSDALYFNPI 119
             DSPI+N L F+ ++    ++   + ++   R  S M E+ VVGSCNGLLC+SD+LY + +
Sbjct:    82 DSPIRNGLHFLDLS---EEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSL 138

Query:   120 IVCNPFTGSYLELAKAT-QHAQEELAFGFGCNSSTMEYKVVRIVF-------NFNTYRSL 171
              + NPFT + LEL + + ++  +EL FGFG +  T EYKV++IV+       N   YR  
Sbjct:   139 YLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRG- 197

Query:   172 RDRGWPRKSDVEVLTVGIDHT-----WRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNN 226
             R R   ++S+V++LT+    T     WR LG  P++    +SEAL+NG LH+VT   ++ 
Sbjct:   198 RGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHV 257

Query:   227 PGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKE 286
             P  +   +SFDL +E+F EI  PDCG L+  N  LV L+GCL AV   +   ++IW+MK 
Sbjct:   258 PDRKF--VSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKT 315

Query:   287 YKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANG 346
             Y V+ESW K+Y IGTYLP  L++N    + + K +  G+   +V+C  +NGEILLEY + 
Sbjct:   316 YGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGK-VVRVLCLLENGEILLEYKSR 374

Query:   347 ALVSYNPENEELKDLVIFDPPKWFCSIVHVESL 379
              LV+Y+P+  + KDL+    P WF ++VH  +L
Sbjct:   375 VLVAYDPKLGKFKDLLFHGLPNWFHTVVHAGTL 407
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016149 AT1G70380 "AT1G70380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2203708 AT1G53550 "AT1G53550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027397 AT1G11620 "AT1G11620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100524 AT3G52320 "AT3G52320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197021 AT1G53790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087877 AT3G22350 "AT3G22350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SFC7FB135_ARATHNo assigned EC number0.41470.94610.8848yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XIV.3659.1
f-box family protein (388 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 2e-20
pfam1293747 pfam12937, F-box-like, F-box-like 2e-07
pfam07734159 pfam07734, FBA_1, F-box associated 7e-07
pfam0064648 pfam00646, F-box, F-box domain 4e-06
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 2e-05
pfam08268125 pfam08268, FBA_3, F-box associated domain 0.003
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 89.0 bits (221), Expect = 2e-20
 Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)

Query: 101 VGSCNGLLCVSDALYFNPIIVCNPFTGSY--LELAKATQHAQEELAFGFGCNSSTMEYKV 158
           V  C+GL+C S   Y   ++V NP TG    L   K+ +  +E   +  G +    +YKV
Sbjct: 1   VVPCDGLICFS---YGKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKV 57

Query: 159 VRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHW 218
           +               G   +S+ +V T+G + +WR +   P      +    +NG L++
Sbjct: 58  LCFSD---------RSGNRNQSEHQVYTLGSN-SWRTIECSPPHHPLKSRGVCINGVLYY 107

Query: 219 VTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCN-FHLVVLRGCLSAVH-CLDD 276
           +    K NP     I+SFD++ E F E     CG+    +   L+  +G L+ +    D 
Sbjct: 108 LAYTLKTNPDYF--IVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDT 165

Query: 277 KGMEIWIMKEYKVRESWSKDY 297
              ++W++ +   +E WSK +
Sbjct: 166 NNFDLWVLNDAGKQE-WSKLF 185

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|219544 pfam07734, FBA_1, F-box associated Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|219769 pfam08268, FBA_3, F-box associated domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 390
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.72
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.65
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.46
PHA02713557 hypothetical protein; Provisional 99.15
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.1
PHA03098534 kelch-like protein; Provisional 98.99
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.96
PHA02713557 hypothetical protein; Provisional 98.95
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.94
PHA02790480 Kelch-like protein; Provisional 98.91
PLN02153341 epithiospecifier protein 98.8
PLN02193470 nitrile-specifier protein 98.79
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.74
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.73
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.71
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.7
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.63
PLN02153341 epithiospecifier protein 98.51
PHA02790480 Kelch-like protein; Provisional 98.46
PHA03098534 kelch-like protein; Provisional 98.39
PLN02193470 nitrile-specifier protein 98.31
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.3
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.14
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.02
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.56
KOG1230 521 consensus Protein containing repeated kelch motifs 97.51
KOG4693392 consensus Uncharacterized conserved protein, conta 97.4
KOG4693392 consensus Uncharacterized conserved protein, conta 97.25
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.1
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.59
KOG2997366 consensus F-box protein FBX9 [General function pre 96.46
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.25
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 95.91
smart00284255 OLF Olfactomedin-like domains. 95.19
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 94.5
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 93.76
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 93.72
PF1396450 Kelch_6: Kelch motif 93.69
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 92.94
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 92.62
PF1396450 Kelch_6: Kelch motif 92.27
KOG1230 521 consensus Protein containing repeated kelch motifs 90.33
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 90.22
smart0061247 Kelch Kelch domain. 89.82
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 88.3
KOG4341483 consensus F-box protein containing LRR [General fu 87.86
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 87.42
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 87.2
KOG2055 514 consensus WD40 repeat protein [General function pr 85.55
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 85.5
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 84.48
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 84.13
COG3055381 Uncharacterized protein conserved in bacteria [Fun 84.1
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 83.12
smart0061247 Kelch Kelch domain. 81.65
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=1.5e-35  Score=261.81  Aligned_cols=223  Identities=25%  Similarity=0.396  Sum_probs=165.4

Q ss_pred             EeecCceEEeeeccccccEEEEcCCCcceecccCccCC--CCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCC
Q 016367          101 VGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQH--AQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPR  178 (390)
Q Consensus       101 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~  178 (390)
                      ++|||||||+...   ..++||||+||+++.||+++..  ......++||||+.+++||||++....         ....
T Consensus         1 ~~sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~---------~~~~   68 (230)
T TIGR01640         1 VVPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS---------GNRN   68 (230)
T ss_pred             CcccceEEEEecC---CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec---------CCCC
Confidence            4799999999875   6899999999999999977431  111225799999999999999997632         1113


Q ss_pred             CCeEEEEEeCCCCcccccCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceee-eecCCCCCCCCCc
Q 016367          179 KSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFG-EIGLPDCGSLSVC  257 (390)
Q Consensus       179 ~~~~~vyss~~~~~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~~~  257 (390)
                      ...++||+++++ +||.++..+........+|++||++||+.... .. .....|++||+.+|+|+ .+++|........
T Consensus        69 ~~~~~Vys~~~~-~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~-~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~  145 (230)
T TIGR01640        69 QSEHQVYTLGSN-SWRTIECSPPHHPLKSRGVCINGVLYYLAYTL-KT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVD  145 (230)
T ss_pred             CccEEEEEeCCC-CccccccCCCCccccCCeEEECCEEEEEEEEC-CC-CCcEEEEEEEcccceEeeeeecCcccccccc
Confidence            468999999999 99998753332222244999999999998764 11 11138999999999999 5899976532223


Q ss_pred             ceEEEEeCCeEEEEEe-CCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeC
Q 016367          258 NFHLVVLRGCLSAVHC-LDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKN  336 (390)
Q Consensus       258 ~~~L~~~~G~L~~~~~-~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (390)
                      ...|++++|+||++.. .....++||+|++++. ..|++.++|++             .....   .... ..++++.++
T Consensus       146 ~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~-~~W~k~~~i~~-------------~~~~~---~~~~-~~~~~~~~~  207 (230)
T TIGR01640       146 YLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGK-QEWSKLFTVPI-------------PPLPD---LVDD-NFLSGFTDK  207 (230)
T ss_pred             ceEEEEECCEEEEEEecCCCCcEEEEEECCCCC-CceeEEEEEcC-------------cchhh---hhhh-eeEeEEeeC
Confidence            5789999999999544 3245699999998874 46999999996             22211   1111 457788889


Q ss_pred             CceEeeeeC--Ce-EEEEeCCCC
Q 016367          337 GEILLEYAN--GA-LVSYNPENE  356 (390)
Q Consensus       337 g~il~~~~~--~~-l~~yd~~t~  356 (390)
                      |+|++...+  .. ++.||++++
T Consensus       208 g~I~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       208 GEIVLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             CEEEEEeCCCCceEEEEEeccCC
Confidence            999988764  34 999999985

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 1e-07
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 2e-06
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 5e-04
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 2  ENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRL 40
          ++LP ++ L I S L +  L++   VC+ W  LA D  L
Sbjct: 10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.27
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.21
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.21
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.2
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.17
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.16
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.09
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.07
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.03
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.02
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.0
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.0
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.0
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.94
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.85
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.75
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.72
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.68
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.55
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.54
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.18
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.91
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.79
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.73
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.43
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.82
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.31
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 93.99
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 92.14
3jrp_A 379 Fusion protein of protein transport protein SEC13 91.65
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 91.14
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 91.03
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 90.55
4e54_B435 DNA damage-binding protein 2; beta barrel, double 89.86
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 89.56
3jro_A 753 Fusion protein of protein transport protein SEC13 89.38
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 89.18
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 87.77
3dwl_C 377 Actin-related protein 2/3 complex subunit 1; prope 87.09
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 87.07
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 87.03
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 86.29
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 86.1
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 85.18
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 84.99
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 82.96
4g56_B357 MGC81050 protein; protein arginine methyltransfera 82.3
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 82.07
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 81.93
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 81.46
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 81.13
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 81.04
3fm0_A 345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 80.49
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
Probab=99.27  E-value=5.9e-09  Score=94.67  Aligned_cols=231  Identities=13%  Similarity=0.034  Sum_probs=142.3

Q ss_pred             EeecCceEEeeecc---ccccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCC
Q 016367          101 VGSCNGLLCVSDAL---YFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWP  177 (390)
Q Consensus       101 ~~s~~GLl~~~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~  177 (390)
                      ....+|.|.+..+.   ....+.++||.|++|..+|+++.....+...  .++   +  +++.+....    .    ...
T Consensus        51 ~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~---~--~iyv~GG~~----~----~~~  115 (306)
T 3ii7_A           51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC--AAE---G--KIYTSGGSE----V----GNS  115 (306)
T ss_dssp             EEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE--EET---T--EEEEECCBB----T----TBS
T ss_pred             EEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE--EEC---C--EEEEECCCC----C----CCc
Confidence            33456666555442   2467999999999999998876443333222  222   2  344433211    0    112


Q ss_pred             CCCeEEEEEeCCCCcccccCCCCcccCCCCceEEECCcEEEEEeeccCCCC--CceEEEEEECCCceeeee-cCCCCCCC
Q 016367          178 RKSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPG--PRLRIMSFDLAEEDFGEI-GLPDCGSL  254 (390)
Q Consensus       178 ~~~~~~vyss~~~~~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~--~~~~il~fD~~~e~~~~i-~lP~~~~~  254 (390)
                      ....+++|+..++ +|+.++.+|..... ...+.++|.+|.++........  ....+..||+.+++|+.+ ++|...  
T Consensus       116 ~~~~~~~~d~~~~-~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--  191 (306)
T 3ii7_A          116 ALYLFECYDTRTE-SWHTKPSMLTQRCS-HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR--  191 (306)
T ss_dssp             CCCCEEEEETTTT-EEEEECCCSSCCBS-CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC--
T ss_pred             EeeeEEEEeCCCC-ceEeCCCCcCCcce-eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh--
Confidence            3467999999999 99999877755433 5578889999998765411110  023699999999999998 445433  


Q ss_pred             CCcceEEEEeCCeEEEEEeC-C-CCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEE
Q 016367          255 SVCNFHLVVLRGCLSAVHCL-D-DKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVC  332 (390)
Q Consensus       255 ~~~~~~L~~~~G~L~~~~~~-~-~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (390)
                        .....+..+|+|+++... . ...-++|.++-.  +..|..+..++.             ..       .   ....+
T Consensus       192 --~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~-------------~r-------~---~~~~~  244 (306)
T 3ii7_A          192 --KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK--LNEWKMVSPMPW-------------KG-------V---TVKCA  244 (306)
T ss_dssp             --BSCEEEEETTEEEEECCEETTEEBCCEEEEETT--TTEEEECCCCSC-------------CB-------S---CCEEE
T ss_pred             --hcceEEEECCEEEEEeCCCCCCCCceEEEeeCC--CCcEEECCCCCC-------------Cc-------c---ceeEE
Confidence              455677889999995432 1 123356776632  568998754333             11       0   11122


Q ss_pred             EeeCCceEeeee------CCeEEEEeCCCCcEEEE-EEeCCCCceEEEeeecc
Q 016367          333 DWKNGEILLEYA------NGALVSYNPENEELKDL-VIFDPPKWFCSIVHVES  378 (390)
Q Consensus       333 ~~~~g~il~~~~------~~~l~~yd~~t~~~~~v-~~~~~~~~~~~~~y~~s  378 (390)
                      +. ++.|++...      ...+..||+++++|+++ .+......+.+....+.
T Consensus       245 ~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~  296 (306)
T 3ii7_A          245 AV-GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVDT  296 (306)
T ss_dssp             EE-TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEEEEEC
T ss_pred             EE-CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEEECCc
Confidence            22 566766643      24699999999999999 44544444555555444
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 390
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 3e-09
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 5e-07
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 5e-06
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 0.002
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (120), Expect = 3e-09
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 2  ENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRL 40
          ++LP ++ L I S L +  L++   VC+ W  LA D  L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.21
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.65
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.5
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.46
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.33
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.23
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.53
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.42
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 90.78
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.5e-12  Score=76.63  Aligned_cols=39  Identities=36%  Similarity=0.675  Sum_probs=36.4

Q ss_pred             CCCcHHHHHHHHccCCccchhhhhhhhHhhhhhhcCCCh
Q 016367            2 ENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRL   40 (390)
Q Consensus         2 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F   40 (390)
                      +.||+|++.+||++||+++++|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999988754
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure