Citrus Sinensis ID: 016373

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
MENGKYSSWKNSSLDGLEHLEEDGELRAASSLPLIPQPQTPKEPMEFLSRSWSLSASEISKALAQKQKQLLLDQNFNAMPETLHGSQISASIVNSINARRTGSIGKWFHHHRELSTSKVKKKDRARVENARMHSALSVAGLAAALAAVAAAAGKSDSSGSKMSMALSSATELLASHCIELAESAGADHDRVASVVRSAVDIQTPGDLMTLTAAAATALRGEAALKARLPKEARKNASISPYEREVAETHWPAAFRSQLEKQRHPCEGELMQLTRKGVLRCKFVSVYINKKSQVIVKLKSKHVGGAFSKKNKCIVYGVCDESAAWPYKKEREISEEVYFGLKTAQGLLEFKCKSKIHKQRWVDGIQNLLRQVSSLEATELSLESLCISNSM
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccHHHHcccccccccHHHHcccccHHHHHHHHHcccccccccEEEcccccEEEEEEEEEEccccEEEEEEccccccccccccccEEEEEEccccccccccccccccEEEEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccc
ccccccccccccccHcHccHHHcccccccccccccccccccccHHHHHcccccccHHHHHHHHHcccccccccccccccccHcccccccccccccccccccccHcHHHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcEcccccccccccccccccccHHHHcccccHHEEccccccEEEEEEEEEccccEEEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEEEEEEcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccc
mengkysswknssldGLEHLEedgelraasslplipqpqtpkepmeflsrsWSLSASEISKALAQKQKQLLLDQNfnampetlhgsqiSASIVNSINArrtgsigkwfhhhrelstskvkkkDRARVENARMHSALSVAGLAAALAAVAAAagksdssgskMSMALSSATELLASHCIELAesagadhdRVASVVRsavdiqtpgdLMTLTAAAATALRGEAALKARlpkearknasispyerevaethwPAAFRSQLekqrhpcegelmqltrkgvlrckfVSVYINKKSQVIVKLKSkhvggafskknkcivygvcdesaawpykkereisEEVYFGLKTAQGLLEFKCKSKIHKQRWVDGIQNLLRQVSSLEATELSLESLCISNSM
mengkysswknsslDGLEHLEEDGELRAASSLPLIPQPQTPKEPMEFLSRSWSLSASEISKALAQKQKQLLLDQNFNAMPETLHGSQISASIVNSINARRTGsigkwfhhhrelstskvkkkdrARVENARMHSALSVAGLAAALAAVAAAAGKSDSSGSKMSMALSSATELLASHCIELAESAGADHDRVASVVRSavdiqtpgdLMTLTAAAATALRGEAAlkarlpkearknasispyerevaETHWPAAFRSQLEKQRHPCEGELMQLTRKGVLRCKFVSVYINKKSQVIVKLkskhvggafskknkcivYGVCDESAAWPYKKEREISEEVYFGLKTAQGLLEFKCKSKIHKQRWVDGIQNLLRQVSsleatelsleslcisnsm
MENGKYSSWKNSSldglehleedgelRAASSLPLIPQPQTPKEPMEFLSRSWSLSASEISkalaqkqkqlllDQNFNAMPETLHGSQISASIVNSINARRTGSIGKWFHHHRELSTSKVKKKDRARVENARMHsalsvaglaaalaavaaaagksdssgskmsmalssaTELLASHCIELAESAGADHDRVASVVRSAVDIQTPGDLMtltaaaatalrgeaalkaRLPKEARKNASISPYEREVAETHWPAAFRSQLEKQRHPCEGELMQLTRKGVLRCKFVSVYINKKSQVIVKLKSKHVGGAFSKKNKCIVYGVCDESAAWPYKKEREISEEVYFGLKTAQGLLEFKCKSKIHKQRWVDGIQNLLRQVssleatelsleslCISNSM
***************************************************************************************ISASIVNSINARRTGSIGKWFHHH************************LSVAGLAAALAAVA**********************LLASHCIELAESAGADHDRVASVVRSAVDIQTPGDLMTLTAAAATALR******************************WPAA***********CEGELMQLTRKGVLRCKFVSVYINKKSQVIVKLKSKHVGGAFSKKNKCIVYGVCDESAAWPYKKEREISEEVYFGLKTAQGLLEFKCKSKIHKQRWVDGIQNLLRQVSSLEATEL***********
************SLDGLEHLEED***********************FLSRSW*****************************************************************************ARMHSALSVAGLAAALAAV*****************LSSATELLASHCIELAESAGADHDRVASVV***********LMTLTAAAATALRGEAAL****************YEREVAETHWPAAFRSQLEKQRHPCEGELMQLTRKGVLRCKFVSVYINKKSQVIVKLKSKHVGGAFSKKNKCIVYGVCDESAAWP****REISEEVYFGLKTAQGLLEFKCKSKIHKQRWVDGIQNLLRQVSSLEATELSLESLCIS***
*********KNSSLDGLEHLEEDGELRAASSLPLIPQPQTPKEPMEFLSRSWSLSASEISKALAQKQKQLLLDQNFNAMPETLHGSQISASIVNSINARRTGSIGKWFHHH****************ENARMHSALSVAGLAAAL*********************SSATELLASHCIELAESAGADHDRVASVVRSAVDIQTPGDLMTLTAAAATALRGEAALKARLPKEARKNASISPYEREVAETHWPAAFRSQLEKQRHPCEGELMQLTRKGVLRCKFVSVYINKKSQVIVKLKSKHVGGAFSKKNKCIVYGVCDESAAWPYKKEREISEEVYFGLKTAQGLLEFKCKSKIHKQRWVDGIQNLLRQVSSLEATELSLESLCISNSM
******************************SLPLIPQPQTPKEPMEFLSRSWSLSA*EISKALAQKQ****************************************************K***RARVENARMHSALSVAGLAAALAAVAAAA*********************ASHCIELAESAGADHDRVASVVRSAVDIQTPGDLMTLTAAAATALRGEAALKARLPKEARKNASISPYEREVAETHWPAAFRSQLEKQRHPCEGELMQLTRKGVLRCKFVSVYINKKSQVIVKLKSKHVGGAFSKKNKCIVYGVCDESAAWPYKKEREISEEVYFGLKTAQGLLEFKCKSKIHKQRWVDGIQNLLRQVSSLEATELSLESLCI****
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MENGKYSSWKNSSLDGLEHLEEDGELRAASSLPLIPQPQTPKEPMEFLSRSWSLSASEISKALAQKQKQLLLDQNFNAMPETLHGSQISASIVNSINARRTGSIGKWFHHHRELSTSKVKKKDRARVENARMHSALSVAGLAAALAAVAAAAGKSDSSGSKMSMALSSATELLASHCIELAESAGADHDRVASVVRSAVDIQTPGDLMTLTAAAATALRGEAALKARLPKEARKNASISPYEREVAETHWPAAFRSQLEKQRHPCEGELMQLTRKGVLRCKFVSVYINKKSQVIVKLKSKHVGGAFSKKNKCIVYGVCDESAAWPYKKEREISEEVYFGLKTAQGLLEFKCKSKIHKQRWVDGIQNLLRQVSSLEATELSLESLCISNSM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
255579629386 conserved hypothetical protein [Ricinus 0.974 0.984 0.748 1e-146
30684004405 uncharacterized protein [Arabidopsis tha 0.989 0.953 0.645 1e-133
110738346405 hypothetical protein [Arabidopsis thalia 0.989 0.953 0.642 1e-133
449469436390 PREDICTED: uncharacterized protein LOC10 0.997 0.997 0.654 1e-130
224071105374 predicted protein [Populus trichocarpa] 0.948 0.989 0.734 1e-130
224137864385 predicted protein [Populus trichocarpa] 0.982 0.994 0.695 1e-129
2245094383 hypothetical protein [Arabidopsis thalia 0.935 0.953 0.659 1e-129
297804450405 predicted protein [Arabidopsis lyrata su 0.989 0.953 0.637 1e-128
356540536391 PREDICTED: uncharacterized protein LOC10 0.987 0.984 0.637 1e-124
89257633403 hypothetical protein 31.t00035 [Brassica 0.976 0.945 0.643 1e-124
>gi|255579629|ref|XP_002530655.1| conserved hypothetical protein [Ricinus communis] gi|223529788|gb|EEF31724.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 289/386 (74%), Positives = 336/386 (87%), Gaps = 6/386 (1%)

Query: 6   YSSWKNSSLDGLEHLEEDGELRAASSLPLIPQPQTPKEPMEFLSRSWSLSASEISKALAQ 65
           +S+ K+ SL  L++LEED E + ASS+P IPQPQTPKEPMEFLSRSWSLSASEISKALAQ
Sbjct: 6   FSAGKDGSL--LDYLEEDREQKLASSMPAIPQPQTPKEPMEFLSRSWSLSASEISKALAQ 63

Query: 66  KQKQLLLDQNFNAMPETLHGSQISASIVNSINARRTGSIGKWFHHHRELSTSKVKKKDRA 125
           KQ+Q  +D+  N  P+T+   Q S  ++NSIN+R+TGSIGKWFHH +ELS+S VKKKD+A
Sbjct: 64  KQRQFFIDKQPNIFPDTIVPPQFSGKMINSINSRKTGSIGKWFHH-KELSSSTVKKKDKA 122

Query: 126 RVENARMHSALSVAGLAAALAAVAAAAGKSDSSGSKMSMALSSATELLASHCIELAESAG 185
           R+ENA MHSA+SVAGLAAALAAVAA+    DS GSKM MAL+SATELLASHCIELAESAG
Sbjct: 123 RMENAHMHSAISVAGLAAALAAVAASGNSGDS-GSKMGMALASATELLASHCIELAESAG 181

Query: 186 ADHDRVASVVRSAVDIQTPGDLMTLTAAAATALRGEAALKARLPKEARKNASISPYEREV 245
           ADHDRVASVVRSAVDI +PGDLMTLTAAAATALRGEAAL+ARLPKEA+KNA+ISP +R +
Sbjct: 182 ADHDRVASVVRSAVDIHSPGDLMTLTAAAATALRGEAALRARLPKEAKKNAAISPCDRGM 241

Query: 246 AETHWPAAFRS-QLEKQRHPCEGELMQLTRKGVLRCKFVSVYINKKSQVIVKLKSKHVGG 304
           A+T W +A+ S ++E Q  PC GELMQ TRKGVLR K +SVYINKKS+VI+K+KSKHVGG
Sbjct: 242 ADTSWDSAYSSGEVEAQAPPCNGELMQHTRKGVLRWKLISVYINKKSEVIIKIKSKHVGG 301

Query: 305 AFSKKNKCIVYGVCDESAAWPYKKEREISEEVYFGLKTAQGLLEFKCKSKIHKQRWVDGI 364
           AFSKK+KCIVYGVCDE+ AWPY+KERE SE+VYFGLKTAQGLLEFKCK+KIHKQRWVDGI
Sbjct: 302 AFSKKHKCIVYGVCDETTAWPYRKERESSEDVYFGLKTAQGLLEFKCKNKIHKQRWVDGI 361

Query: 365 QNLLRQVSSLEATELSLESLCISNSM 390
           QNLL QVS +EATE SLE L I++S+
Sbjct: 362 QNLL-QVSCVEATEGSLEFLSINDSI 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|30684004|ref|NP_193466.2| uncharacterized protein [Arabidopsis thaliana] gi|54606846|gb|AAV34771.1| At4g17350 [Arabidopsis thaliana] gi|98960971|gb|ABF58969.1| At4g17350 [Arabidopsis thaliana] gi|332658479|gb|AEE83879.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110738346|dbj|BAF01100.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449469436|ref|XP_004152426.1| PREDICTED: uncharacterized protein LOC101210879 [Cucumis sativus] gi|449488760|ref|XP_004158163.1| PREDICTED: uncharacterized protein LOC101225376 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224071105|ref|XP_002303358.1| predicted protein [Populus trichocarpa] gi|222840790|gb|EEE78337.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224137864|ref|XP_002326459.1| predicted protein [Populus trichocarpa] gi|222833781|gb|EEE72258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|2245094|emb|CAB10516.1| hypothetical protein [Arabidopsis thaliana] gi|7268487|emb|CAB78738.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297804450|ref|XP_002870109.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315945|gb|EFH46368.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356540536|ref|XP_003538744.1| PREDICTED: uncharacterized protein LOC100814851 [Glycine max] Back     alignment and taxonomy information
>gi|89257633|gb|ABD65121.1| hypothetical protein 31.t00035 [Brassica oleracea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
TAIR|locus:2130888405 AT4G17350 [Arabidopsis thalian 0.948 0.913 0.519 3.2e-97
TAIR|locus:2168943406 AT5G47440 [Arabidopsis thalian 1.0 0.960 0.469 4.7e-87
TAIR|locus:2129031429 AT4G16670 [Arabidopsis thalian 0.858 0.780 0.443 3.8e-69
TAIR|locus:2094414472 AT3G22810 [Arabidopsis thalian 0.261 0.216 0.490 5.3e-43
TAIR|locus:2130185475 AT4G14740 [Arabidopsis thalian 0.258 0.212 0.485 3.5e-40
TAIR|locus:2149514453 AT5G43870 [Arabidopsis thalian 0.694 0.598 0.295 6.4e-37
TAIR|locus:2077294498 FKD1 "FORKED 1" [Arabidopsis t 0.258 0.202 0.431 5.5e-32
TAIR|locus:1006230325124 AT4G32785 [Arabidopsis thalian 0.266 0.838 0.452 3.4e-22
TAIR|locus:2125667270 AT4G32780 "AT4G32780" [Arabido 0.248 0.359 0.277 3.7e-10
TAIR|locus:2130888 AT4G17350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 201/387 (51%), Positives = 237/387 (61%)

Query:     1 MENGKYSSWKNSSXXXXXXXXXXXXX------RAASSLPLIPQPQTPKEPMEFLSRSWSL 54
             ME+G YS WK++S                   RA      IPQPQTPKEPMEFLSRSWSL
Sbjct:     1 MESGFYSDWKDTSSSSFFGSENMEEELEDGVLRAEELFSSIPQPQTPKEPMEFLSRSWSL 60

Query:    55 SASEISXXXXXXXXXXXXD----QNFNAM--PETLHGSQISASIVNSINARRTGSIGKWF 108
             S SEIS                 QN   +  P+      ++  I+NS+  RR G++ KWF
Sbjct:    61 STSEISKALALKHRQQQDQFCVGQNSPPVLFPDAAADPLVAGKIMNSVGTRRAGTLSKWF 120

Query:   109 HHHRELSTSK----VKKKDRARVENARMHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 164
             HH++E STS     +KKKD+ RVENA +H                               
Sbjct:   121 HHNKEHSTSSTTTNLKKKDKVRVENAHVHSAVSIAALAAGLASVTSASNCKGSGSKMALA 180

Query:   165 XXXXXTELLASHCIELAESAGADHDRVASVVRSAVDIQTPGDLMXXXXXXXXXXXXXXXX 224
                  TELLASHC+E+AE AGADH RV S VRS+VDI +PGDLM                
Sbjct:   181 LASA-TELLASHCVEMAERAGADHARVTSTVRSSVDIHSPGDLMTLTAAAATALRGEAAL 239

Query:   225 XXRLPKEARKNASISPYEREVAETHWPAAFRSQLEKQRHPCEGELMQLTRKGVLRCKFVS 284
               R PKEARKNA+I+P+ER  +++HW A F+ +LE+   P EGELMQ  R GV R K V 
Sbjct:   240 KARQPKEARKNAAITPFERSFSDSHWHANFQYRLEEPNLPFEGELMQCARNGVQRTKRVC 299

Query:   285 VYINKKSQVIVKLKSKHVGGAFSKKNKCIVYGVCDESAAWPYKKEREISEEVYFGLKTAQ 344
             VYINKKSQV++KLKSKHVGGAFSKK KC+VYGVCDE +AWPY+KERE SEEVYFGLKT Q
Sbjct:   300 VYINKKSQVMIKLKSKHVGGAFSKKIKCVVYGVCDEKSAWPYRKERENSEEVYFGLKTGQ 359

Query:   345 GLLEFKCKSKIHKQRWVDGIQNLLRQV 371
             GLLEFKCKSKIHKQRWVDG+Q+LLRQV
Sbjct:   360 GLLEFKCKSKIHKQRWVDGVQSLLRQV 386
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0007165 "signal transduction" evidence=ISS
GO:0035091 "phosphatidylinositol binding" evidence=ISS
TAIR|locus:2168943 AT5G47440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129031 AT4G16670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094414 AT3G22810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130185 AT4G14740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149514 AT5G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077294 FKD1 "FORKED 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230325 AT4G32785 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125667 AT4G32780 "AT4G32780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
DL4710W
phosphoinositide binding; phosphoinositide binding; FUNCTIONS IN- phosphoinositide binding; INVOLVED IN- signal transduction; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Pleckstrin-like, plant (InterPro-IPR013666), Protein of unknown function DUF828, plant (InterPro-IPR008546), Pleckstrin homology (InterPro-IPR001849); BEST Arabidopsis thaliana protein match is- phosphoinositide binding (TAIR-AT5G47440.1); Has 122 Blast hits to 113 proteins in 12 species- Archae - 0; Bacteria - 0; Metazoa - 0 [...] (405 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT3G50340
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (403 aa)
      • 0.750
AT1G78100
F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (334 aa)
   •  • 0.731
AT2G44940
AP2 domain-containing transcription factor TINY, putative; encodes a member of the DREB subfami [...] (295 aa)
      • 0.679
AT1G34170
transcription factor; transcription factor; FUNCTIONS IN- transcription factor activity; INVOLV [...] (546 aa)
      • 0.659
AT1G29440
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- response to auxin stimu [...] (141 aa)
      • 0.657
TIP2;2
TIP2;2 (TONOPLAST INTRINSIC PROTEIN 2;2); water channel; TONOPLAST INTRINSIC PROTEIN 2;2 (TIP2; [...] (250 aa)
      • 0.597
ARF9
ARF9 (AUXIN RESPONSE FACTOR 9); transcription factor; Encodes auxin response factor 9 (ARF9). ; [...] (638 aa)
      • 0.539
ZFP2
ZFP2 (ZINC FINGER PROTEIN 2); nucleic acid binding / transcription factor/ zinc ion binding; En [...] (150 aa)
      • 0.534
LBD29
LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29); This gene contains two auxin-responsive element (Au [...] (218 aa)
   •  • 0.523
LBD18
LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18); LOB DOMAIN-CONTAINING PROTEIN 18 (LBD18); INVOLVED IN [...] (262 aa)
      • 0.468

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
pfam05703226 pfam05703, Auxin_canalis, Auxin canalisation 1e-77
pfam08458110 pfam08458, PH_2, Plant pleckstrin homology-like re 5e-52
>gnl|CDD|218706 pfam05703, Auxin_canalis, Auxin canalisation Back     alignment and domain information 
 Score =  238 bits (610), Expect = 1e-77
 Identities = 125/228 (54%), Positives = 152/228 (66%), Gaps = 26/228 (11%)

Query: 38  PQTPKEPMEFLSRSWSLSASEISKALAQKQKQLLLDQNFN---------AMPETLHGSQI 88
           PQTP EPMEFLSRSWSLSASEISKAL  K +Q       +          M         
Sbjct: 1   PQTPSEPMEFLSRSWSLSASEISKALHPKVRQ---GSELSFVGNRTSGLVMDRISSQPDA 57

Query: 89  SA------SIVNSINARRTGS---IGKWFHHHRELSTSKVKKKDRARVENARMHSALSVA 139
            +       + + +  RR      IG+WFHH R+ S+   KKKD ARVENA++H+A+SVA
Sbjct: 58  DSPPISPRKLDDVVKLRRANGRKTIGRWFHH-RKESSGNRKKKDEARVENAQVHAAVSVA 116

Query: 140 GLAAALAAVAAAAGKS----DSSGSKMSMALSSATELLASHCIELAESAGADHDRVASVV 195
            +AAA+AAV AA   S    D +GSKM  AL+SA  L+ASHC+E+AESAGAD D+VAS V
Sbjct: 117 AVAAAVAAVTAATNASSSGGDGAGSKMDTALASAAALVASHCVEMAESAGADRDQVASAV 176

Query: 196 RSAVDIQTPGDLMTLTAAAATALRGEAALKARLPKEARKNASISPYER 243
           RSAVD+++PGDLMTLTAAAATALRG A LKAR PKEAR NA++ P E+
Sbjct: 177 RSAVDVRSPGDLMTLTAAAATALRGAATLKARAPKEARNNAAVLPVEK 224

This domain is frequently found at the N-terminus of proteins containing pfam08458 at the C-terminus. It is a component of the auto-regulatory loop which enables auxin canalisation by recruitment of the PIN1 auxin efflux protein to the cell membrane. Length = 226
>gnl|CDD|219853 pfam08458, PH_2, Plant pleckstrin homology-like region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 390
PF05703242 Auxin_canalis: Auxin canalisation; InterPro: IPR00 100.0
PF08458110 PH_2: Plant pleckstrin homology-like region; Inter 100.0
PF12814123 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin 97.36
smart00233102 PH Pleckstrin homology domain. Domain commonly fou 97.04
PF00169104 PH: PH domain; InterPro: IPR001849 The pleckstrin 96.2
cd0125094 PH_centaurin Centaurin Pleckstrin homology (PH) do 95.34
cd0122099 PH_CDEP Chondrocyte-derived ezrin-like domain cont 95.34
cd0082196 PH Pleckstrin homology (PH) domain. Pleckstrin hom 95.1
cd01219101 PH_FGD FGD (faciogenital dysplasia protein) plecks 94.09
cd01235101 PH_SETbf Set binding factor Pleckstrin Homology (P 93.75
cd0090099 PH-like Pleckstrin homology-like domain. Pleckstri 90.78
cd01249104 PH_oligophrenin Oligophrenin Pleckstrin homology ( 90.59
cd01251103 PH_centaurin_alpha Centaurin alpha Pleckstrin homo 89.48
cd0126595 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain 87.84
cd01261112 PH_SOS Son of Sevenless (SOS) Pleckstrin homology 87.33
cd01254121 PH_PLD Phospholipase D (PLD) pleckstrin homology ( 85.89
cd01233100 Unc104 Unc-104 pleckstrin homology (PH) domain. Un 82.59
cd0124691 PH_oxysterol_bp Oxysterol binding protein (OSBP) P 80.17
>PF05703 Auxin_canalis: Auxin canalisation; InterPro: IPR008546 This domain consists of several plant proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=1.3e-76  Score=557.69  Aligned_cols=199  Identities=55%  Similarity=0.788  Sum_probs=174.2

Q ss_pred             CCCCCchhhhhhcccccchHHHHHHHhhhh-----------------------hhhhhh---cccCCCCccccccccccc
Q 016373           38 PQTPKEPMEFLSRSWSLSASEISKALAQKQ-----------------------KQLLLD---QNFNAMPETLHGSQISAS   91 (390)
Q Consensus        38 P~TP~EpMEFLsRSWSlSAsEiskaL~~~~-----------------------~~~~~~---~~~~~~~~~~~~~~~~g~   91 (390)
                      ||||+|||||||||||+||+||||+|....                       .++.|.   .+++++|+++...  .+.
T Consensus         1 PETP~EPMEFLSRSWSvSAsEVSKAL~~~s~~~~ss~~~~~~~~~~~~~~~~~~~~s~~~~~t~~lv~~~~~~~~--~~~   78 (242)
T PF05703_consen    1 PETPREPMEFLSRSWSVSASEVSKALSPPSNRSISSFIDPEDAESDNDKDRFGSSFSFASSATSQLVMDRIMSQS--SGA   78 (242)
T ss_pred             CCCCcccHHHHHHhhhhhHHHHhhhcCCcccccccccccccchhccccccccCCCCCcccccCcccccccccccc--ccc
Confidence            899999999999999999999999999931                       111121   2566676655422  233


Q ss_pred             cccccccc------------CcccccchhcccccccchhhhhhHHHhhhhhhhhhHHhHHHHHHHHHHHHHhcCCC----
Q 016373           92 IVNSINAR------------RTGSIGKWFHHHRELSTSKVKKKDRARVENARMHSALSVAGLAAALAAVAAAAGKS----  155 (390)
Q Consensus        92 ~~~~i~~~------------~~~tigrW~k~~~~~~~~~~kkkee~R~~~AqvHAAVSVA~vAAAvAavaA~~~~~----  155 (390)
                      .+++|+++            ++++|||||||++      +|||||+|+||||||||||||+||||||+|+++++..    
T Consensus        79 ~spp~sp~~~~~~~~~~~~~~~~~i~~w~~~~~------~kkkee~R~~~A~vhaAvSVA~vAaavAavaa~~~~~~~~~  152 (242)
T PF05703_consen   79 DSPPISPRDLDDSKKIIRANGGKTIGRWLKDRK------EKKKEEARAHNAQVHAAVSVAGVAAAVAAVAAATAASSSSG  152 (242)
T ss_pred             CCCCcchhhHHHHHHHHHhcccchHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence            33444433            4679999999977      5999999999999999999999999999999998874    


Q ss_pred             -CCCCchhhhhhhhHHHHHHHHHHHHHHhhCCCchhhhHHHhhhhcccCCCchhhHHHHHHhccchHHHHhhhcchhhhc
Q 016373          156 -DSSGSKMSMALSSATELLASHCIELAESAGADHDRVASVVRSAVDIQTPGDLMTLTAAAATALRGEAALKARLPKEARK  234 (390)
Q Consensus       156 -~~~~~k~~~avASAaaLvAa~CvE~AE~~GA~rd~vasaV~sav~~~s~gdimTLTAaAATaLRGAAtLKaR~~ke~~~  234 (390)
                       +++++||++||||||+|||+||+|+||.|||+||||+++|+|||+++||||||||||+|||||||+||||+|++||+|+
T Consensus       153 ~~~~~~k~~~avASAa~LvAa~C~e~Ae~~GA~~~~v~s~v~sav~~~s~gdi~TLTAaAATaLRGaa~Lk~R~~ke~~~  232 (242)
T PF05703_consen  153 KDESSSKMDAAVASAAALVAAQCAEAAEAAGADRDQVASAVRSAVNVRSPGDIMTLTAAAATALRGAATLKARAQKEARS  232 (242)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHhcCCCchHHHHHHHHHHhcCchHHHHHHHHhhhhhc
Confidence             7789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccc
Q 016373          235 NASISPYERE  244 (390)
Q Consensus       235 ~Aav~P~ek~  244 (390)
                      ||+|+||||+
T Consensus       233 ~a~v~P~e~~  242 (242)
T PF05703_consen  233 NAAVLPYEKG  242 (242)
T ss_pred             ccccccCCCC
Confidence            9999999985

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function Back     alignment and domain information
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis Back     alignment and domain information
>smart00233 PH Pleckstrin homology domain Back     alignment and domain information
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ] Back     alignment and domain information
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd00821 PH Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain Back     alignment and domain information
>cd00900 PH-like Pleckstrin homology-like domain Back     alignment and domain information
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain Back     alignment and domain information
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain Back     alignment and domain information
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 37/137 (27%)

Query: 9   WKNSSLD--------GLEHLEEDGELRAA-SSLPLIPQPQTPKEPMEFLSRSWSLSASEI 59
           WK+ + D         L  LE   E R     L + P   +   P   LS  W       
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPP--SAHIPTILLSLIWFDVIKSD 403

Query: 60  SKALAQK-QKQLLLDQNFNAMPETLHGSQIS------------ASIVNSINARRT---GS 103
              +  K  K  L+++       ++    +              SIV+  N  +T     
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 104 IGK------WFHH---H 111
           +        ++ H   H
Sbjct: 464 LIPPYLDQYFYSHIGHH 480
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
2rlo_A128 Centaurin-gamma 1; split PH domain, alternative sp 95.01
2dn6_A115 KIAA0640 protein; PH domain, structural genomics, 93.78
2cod_A115 Centaurin-delta 1; ARF GAP and RHO GAP with ankyri 93.54
2lul_A164 Tyrosine-protein kinase TEC; structural genomics, 93.53
2q13_A385 DCC-interacting protein 13 alpha; APPL1, BAR domai 93.38
4h8s_A407 DCC-interacting protein 13-beta; BAR domain, pleck 93.27
1u5d_A108 SKAP55, SRC kinase-associated phosphoprotein of 55 93.07
2dhk_A119 TBC1 domain family member 2; PH domain, paris-1, s 92.41
1fao_A126 Dual adaptor of phosphotyrosine and 3- phosphoinos 91.89
1eaz_A125 Tandem PH domain containing protein-1; lipid-bindi 91.29
1mai_A131 Phospholipase C delta-1; pleckstrin, inositol tris 90.81
1v5u_A117 SBF1, SET binding factor 1; MTMR5, the pleckstrin 89.99
2cof_A107 Protein KIAA1914; PH domain, structural genomics, 89.95
2dkp_A128 Pleckstrin homology domain-containing family A mem 89.57
1upq_A123 PEPP1; PH domain, phosphoinositide binding, signal 89.41
3aj4_A112 Pleckstrin homology domain-containing family B ME; 89.32
2d9v_A130 Pleckstrin homology domain-containing protein fami 89.14
2da0_A114 130-kDa phosphatidylinositol 4,5-biphosphate- depe 88.99
2rsg_A94 Collagen type IV alpha-3-binding protein; pleckstr 88.58
1wg7_A150 Dedicator of cytokinesis protein 9; pleckstrin hom 88.55
1pls_A113 Pleckstrin homology domain; phosphorylation; NMR { 87.9
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 87.65
3p6a_A377 RHO guanine nucleotide exchange factor 1; regulati 87.6
1btk_A169 Bruton'S tyrosine kinase; transferase, PH domain, 87.5
2lg1_A185 A-kinase anchor protein 13; metal binding protein; 87.31
1u5f_A148 SRC-associated adaptor protein; PH domain of SKAP- 87.06
2i5f_A109 Pleckstrin; PH domain, protein-inositol phosphate 86.66
2d9y_A117 Pleckstrin homology domain-containing protein fami 86.58
2yry_A122 Pleckstrin homology domain-containing family A mem 85.27
2j59_M168 RHO-GTPase activating protein 10; ARF, ARF1, ARFBD 84.92
1wjm_A123 Beta-spectrin III; PH domain, signal transduction, 84.87
2d9x_A120 Oxysterol binding protein-related protein 11; PH d 84.56
1x1g_A129 Pleckstrin 2; PH domain, structural genomics, rike 84.48
1v89_A118 Hypothetical protein KIAA0053; pleckstrin homology 84.0
1wgq_A109 FYVE, rhogef and PH domain containing 6; ethanol d 83.78
1v5p_A126 Pleckstrin homology domain-containing, family A; T 82.96
2p0d_A129 RHO GTPase-activating protein 9; protein-phosphoin 80.89
1x1f_A149 Signal-transducing adaptor protein 1; docking prot 80.45
1dbh_A354 Protein (human SOS 1); guanine nucleotide exchange 80.12
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Back     alignment and structure
Probab=95.01  E-value=0.11  Score=41.87  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=32.9

Q ss_pred             ceeeEEEEEcCC-eeEEEEeCCchhHhhHHHHHHHHHH
Q 016373          333 SEEVYFGLKTAQ-GLLEFKCKSKIHKQRWVDGIQNLLR  369 (390)
Q Consensus       333 ~~~~yFgLkTa~-G~vEfec~s~~~~q~W~~gI~~lL~  369 (390)
                      +..++|.|.|.+ .+..|.|+|..+.+.|++.|+..+.
T Consensus        87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~  124 (128)
T 2rlo_A           87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQIL  124 (128)
T ss_dssp             CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            467899999998 5999999999999999999998664
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Back     alignment and structure
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Back     alignment and structure
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} Back     alignment and structure
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Back     alignment and structure
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1 Back     alignment and structure
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Back     alignment and structure
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Back     alignment and structure
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Back     alignment and structure
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Back     alignment and structure
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Back     alignment and structure
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Back     alignment and structure
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Back     alignment and structure
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Back     alignment and structure
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Back     alignment and structure
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Back     alignment and structure
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Back     alignment and structure
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Back     alignment and structure
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Back     alignment and structure
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
d1maia_119 Phospholipase C delta-1 {Rat (Rattus norvegicus) [ 96.62
d1u5fa1111 Src-associated adaptor protein Skap2 {Mouse (Mus m 95.51
d1x1ga1116 Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} 95.39
d1zc3b1109 Exocyst complex protein EXO84 {Rat (Rattus norvegi 95.27
d1faoa_100 Dual adaptor of phosphotyrosine and 3-phosphoinosi 95.19
d1eaza_103 Tapp1 {Human (Homo sapiens) [TaxId: 9606]} 95.12
d2coda1102 Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96 94.85
d1wg7a_150 Dedicator of cytokinesis protein 9, DOCK9 {Human ( 94.63
d2i5fa1104 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 94.55
d1btka_169 Bruton's tyrosine kinase {Human (Homo sapiens) [Ta 94.51
d1v5ua_117 SET binding factor 1, Sbf1 {Mouse (Mus musculus) [ 94.18
d1wi1a_126 Calcium-dependent activator protein for secretion, 94.18
d1omwa2119 G-protein coupled receptor kinase 2 (beta-adrenerg 94.05
d1u5da1106 Src kinase-associated phosphoprotein SKAP55 (SCAP1 94.02
d1upqa_107 Phosphoinositol 3-phosphate binding protein-1, PEP 93.73
d1v89a_118 Rho-GTPase-activating protein 25 (KIAA0053) {Human 93.62
d2elba2101 DCC-interacting protein 13-alpha, APPL1 {Human (Ho 93.55
d1plsa_113 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 92.76
d1dbha2133 Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ 92.72
d1wgqa_109 FYVE, RhoGEF and PH domain containing protein 6, F 92.05
d1txda2114 Rho guanine nucleotide exchange factor 12 {Human ( 91.9
d2j59m1133 Rho GTPase-activating protein 21 {Human (Homo sapi 91.51
d1v5ma_136 SH2 and PH domain-containing adapter protein APS { 91.48
d1u5ea1209 Src-associated adaptor protein Skap2 {Mouse (Mus m 91.12
d1unqa_118 Rac-alpha serine/threonine kinase {Human (Homo sap 90.89
d1ntya2121 Triple functional domain protein TRIO {Human (Homo 90.75
d2dfka2162 Rho guanine nucleotide exchange factor 9, Collybis 90.6
d1qqga1103 Insulin receptor substrate 1, IRS-1 {Human (Homo s 89.55
d1v5pa_126 Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} 89.02
d1droa_122 beta-spectrin {Fruit fly (Drosophila melanogaster) 87.6
d1v61a_132 Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [ 87.37
d1btna_106 beta-spectrin {Mouse (Mus musculus), brain [TaxId: 87.11
d2coca199 FYVE, RhoGEF and PH domain containing protein 3, F 86.16
d1x1fa1136 Signal-transducing adaptor protein 1, STAP-1 {Huma 85.58
d1wjma_123 beta-spectrin {Human (Homo sapiens), brain 2 isofo 84.14
d2fjla1101 Phosphoinositide phospholipase C, PLC-gamma-1 {Rat 82.31
d1fgya_127 Grp1 {Mouse (Mus musculus) [TaxId: 10090]} 82.26
d2adza1105 Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1 81.44
>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.62  E-value=0.0022  Score=49.79  Aligned_cols=101  Identities=18%  Similarity=0.282  Sum_probs=61.8

Q ss_pred             cCCCccceeeeccCCeeeEEEEEEEEcCCcEEEEEeccccccccccccceeE----EEeeec--CcccCCCCcc-cccce
Q 016373          262 RHPCEGELMQLTRKGVLRCKFVSVYINKKSQVIVKLKSKHVGGAFSKKNKCI----VYGVCD--ESAAWPYKKE-REISE  334 (390)
Q Consensus       262 ~la~ggeLLkrtrkG~l~wk~VSvyink~~qVilKmKskhv~Gafskkkk~V----V~~V~~--~~pawp~r~e-~~~~~  334 (390)
                      .|-+|+.|+|.+++|.-  |.--++++.+++.+. =++..-  ...++++.|    |..|..  +.+..  +.. ....+
T Consensus        10 ~l~~G~~l~K~~~~~~~--k~R~f~L~~d~~~i~-~~~~~~--~~~~~~~~i~i~~I~~V~~G~~s~~~--~~~~~~~~~   82 (119)
T d1maia_          10 ALLKGSQLLKVKSSSWR--RERFYKLQEDCKTIW-QESRKV--MRSPESQLFSIEDIQEVRMGHRTEGL--EKFARDIPE   82 (119)
T ss_dssp             HHHHCEEEEEESSSSCE--EEEEEEECTTSSEEE-ECCCCT--TCCTTTTEEEGGGEEEEEESSCSHHH--HHHCTTSCG
T ss_pred             HHHcCCeEEEeCCCCCC--EEEEEEEcCCCCEEE-EeCCCC--CCCccceEEEHHHceEEEcCCCCchh--hhcccCCCc
Confidence            45578888899988843  344578888887774 333221  222222222    223322  11111  011 11245


Q ss_pred             eeEEEE--EcCCeeEEEEeCCchhHhhHHHHHHHHHH
Q 016373          335 EVYFGL--KTAQGLLEFKCKSKIHKQRWVDGIQNLLR  369 (390)
Q Consensus       335 ~~yFgL--kTa~G~vEfec~s~~~~q~W~~gI~~lL~  369 (390)
                      .++|.|  +|....+.|.|.|..+++.|++||++||+
T Consensus        83 ~~~FsIv~~~~~r~l~l~a~s~~~~~~Wv~~L~~L~~  119 (119)
T d1maia_          83 DRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIH  119 (119)
T ss_dssp             GGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             CceEEEEEcCCCcEEEEEECCHHHHHHHHHHHHHHhC
Confidence            677855  58888999999999999999999999873
>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Back     information, alignment and structure
>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Back     information, alignment and structure
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Back     information, alignment and structure
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure