Citrus Sinensis ID: 016378

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
Protein Sequence
MVKSNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNFDNELENARHLEFLTQKIELLASESNYKL
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHcccccccccEEEccccccEEEcccHHHHHHHHHcccccccHHHHHHHHHHHcccccccccEEEEccccccccHHHHHHHcccccccccccHHHHHccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcHHHHcHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccHcccHHHHHcHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mvksnddgsnsvapfLNKCYemvddestdsiiswgqsnesfVIWDVTEFSVQllpryfkhsnfsSFIRQLNIYgfrkidtdrwefandgfvrDQKHLLNNICrrkntqgseqrKSLQQSEKlvepcekiDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVtevgepiasdnmlvryhppidetpkpvlkpvtdsgnqmasdtsdgmkdVFMNIDFLKMLMdenqapfipldlhndgewEKLLLanpildnsedtqvdkdkevdkeghtdvdmeaepavsgseleRLNNLELLLQELDKSQNFDNELENARHLEFLTQKIELLASESNYKL
Flexible Loop (DISEMBL)
mvksnddgsnsvAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICrrkntqgseqrkslqqseklvepcEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNqmasdtsdgmKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLAnpildnsedtqvdkdkevdkeghtdvdmeaepavsgselERLNNLELLLQELDKSQNFDNELENARHLEFLTQKiellasesnykl
Low Complexity Region (SEG)
MVKSNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSelerlnnlelllqelDKSQNFDNELENARHLEFLTQKIELLASESNYKL
Disordered region (IsUnstruct)
*************PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICR************************KIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV********QMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVG**I****MLVRY*******************************DVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLL*******************************************************************HLEFLTQKI***********
Disordered Region (DISOPRED)
****************NKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLN****************************************************LLKLRQYQETADNKLLLLRD******KSQQQMLSFLVMAM**********************************************************************************************************************************************************************************RHLEFLTQ*************
Disordered Region (DISEMBL)
*********NSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRK*****************VEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNFDNELENARHLEFLTQKIELLASESNYKL
Disordered Region (DISPRO)
**********SVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRR***************************SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKEN**************************L*****PIDETPKP*LKPVTDS*************D*FMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPIL*************************AEP*VSGSELERLNNLELLLQELDKSQNFDNELENARHLEFLTQKIELLAS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKSNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNFDNELENARHLEFLTQKIELLASESNYKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	390	2.2.26 [Sep-21-2011]
Q9S7U5	374	Heat stress transcription	yes	no	0.925	0.965	0.526	5e-97
Q84T61	506	Heat stress transcription	yes	no	0.623	0.480	0.492	1e-64
Q9LQM7	485	Heat stress transcription	no	no	0.617	0.496	0.462	2e-59
Q40152	527	Heat shock factor protein	N/A	no	0.602	0.445	0.474	5e-59
P41151	495	Heat stress transcription	no	no	0.576	0.454	0.489	5e-58
P41153	527	Heat shock factor protein	N/A	no	0.602	0.445	0.474	3e-57
O81821	481	Heat stress transcription	no	no	0.615	0.498	0.455	1e-55
Q9SCW5	468	Heat stress transcription	no	no	0.541	0.450	0.483	4e-51
P41152	351	Heat shock factor protein	N/A	no	0.528	0.586	0.463	2e-50
Q9LUH8	406	Heat stress transcription	no	no	0.512	0.492	0.475	9e-50

>sp|Q9S7U5|HSFA8_ARATH Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1

 Score =  355 bits (910), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 208/395 (52%), Positives = 254/395 (64%), Gaps = 34/395 (8%)

Query: 1   MVKSNDDGSNS-----VAPFLNKCYEMVDDESTDSIISWGQS-NESFVIWDVTEFSVQLL 54
           MVKS D G  S     VAPFL KCY+MVDD +TDSIISW  S + SFVI D T FSVQLL
Sbjct: 1   MVKSTDGGGGSSSSSSVAPFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLL 60

Query: 55  PRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRK 114
           P+YFKHSNFSSFIRQLNIYGFRK+D DRWEFANDGFVR QK LL N+ RRKN Q SEQ K
Sbjct: 61  PKYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQSSEQSK 120

Query: 115 SLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 174
               S    +     + S LWKEV+ LK  K  L QEL+K+RQYQE  D K+L L DRVQ
Sbjct: 121 HESTSTTYAQ-----EKSGLWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRVQ 175

Query: 175 GMEKSQQQMLSFLVMAMQNPSFLVQLLQPKE-NNWRMA-EAGTMLEEVTEVGEPIASDNM 232
           GME+SQQ+MLSFLVM M+NPS LVQLLQPKE N WR A E   ++EEVT+ GE  +    
Sbjct: 176 GMEESQQEMLSFLVMVMKNPSLLVQLLQPKEKNTWRKAGEGAKIVEEVTDEGESNSYGLP 235

Query: 233 LVRYHPPIDETPKPVLKPVTDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDL 292
           LV Y PP D              N  A   S+ + D   N D LK  +DEN  P I  DL
Sbjct: 236 LVTYQPPSD-------------NNGTAKSNSNDVNDFLRNADMLKFCLDENHVPLIIPDL 282

Query: 293 HNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELL 352
           ++DG WEKLLL +P        +  K + + K+G  D+ +E E      EL++   L+L+
Sbjct: 283 YDDGAWEKLLLLSP-----SRKKTKKQENIVKKGKDDLTLEEEEEDGTMELDKSYMLKLI 337

Query: 353 LQELDKSQNFD-NEL--ENARHLEFLTQKIELLAS 384
            +E++K  +F+  +L  E +R+LE LT+++ELLAS
Sbjct: 338 SEEMEKPDDFEFGQLTPERSRNLEILTEQMELLAS 372

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  247 bits (630), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 124/252 (49%), Positives = 163/252 (64%), Gaps = 9/252 (3%)

Query: 9   SNSVA----PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFS 64
           SN VA    PFL K YEMVDD +TD+++SWG  N SFV+W+  EF+  LLP+YFKHSNFS
Sbjct: 28  SNGVATAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFS 87

Query: 65  SFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVE 124
           SF+RQLN YGFRK+D DRWEFAN+GF+R QKHLL  I RRK T G+ Q +  Q     V 
Sbjct: 88  SFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVP 147

Query: 125 PCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 184
            C ++    + +E+E LK  KN L QEL++LRQ Q+T D++L  L  R+QGME+ QQQM+
Sbjct: 148 ACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMM 207

Query: 185 SFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEV-----GEPIASDNMLVRYHPP 239
           SFL  AM +P FL Q +Q  EN+ R   A      + +       E  + D  +V+Y P 
Sbjct: 208 SFLAKAMHSPGFLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPM 267

Query: 240 IDETPKPVLKPV 251
           I+E  K +L+ +
Sbjct: 268 INEAAKAMLRKI 279

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2

 Score =  229 bits (585), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/253 (46%), Positives = 158/253 (62%), Gaps = 12/253 (4%)

Query: 9   SNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIR 68
           SN+  PFL+K Y+MVDD +TDSI+SW  +N SF++W   EF+  LLP+ FKH+NFSSF+R
Sbjct: 32  SNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVR 91

Query: 69  QLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSE----KLVE 124
           QLN YGFRK+D DRWEFAN+GF+R QKHLL +I RRK   G  Q     Q        V 
Sbjct: 92  QLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVS 151

Query: 125 PCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 184
            C ++    L +EVE LK  KN L QEL++LRQ Q++ DN+L  +  R+QGME  QQQ++
Sbjct: 152 ACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQLM 211

Query: 185 SFLVMAMQNPSFLVQLL----QPKENNWRMAEAGT----MLEEVTEVGEPIASDNMLVRY 236
           SFL  A+Q+P FL Q L    Q  E+N R+++         + +    +    D  +V+Y
Sbjct: 212 SFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKRDGIVRNNDSATPDGQIVKY 271

Query: 237 HPPIDETPKPVLK 249
            PP+ E  K + K
Sbjct: 272 QPPMHEQAKAMFK 284

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1

 Score =  228 bits (582), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 119/251 (47%), Positives = 159/251 (63%), Gaps = 16/251 (6%)

Query: 15  FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYG 74
           FL K Y+MVDD STD I+SW  +N SFV+WD  EF+  LLP+YFKH+NFSSF+RQLN YG
Sbjct: 40  FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYG 99

Query: 75  FRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQG-----------SEQRKSLQQSEKLV 123
           FRK+D DRWEFAN+GF+R QKHLL +I RRK   G           ++Q+         V
Sbjct: 100 FRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASV 159

Query: 124 EPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQM 183
             C ++    L +EVE LK  KN L QEL++LRQ Q+  DN+L  +  R+QGME  QQQM
Sbjct: 160 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRLQGMELRQQQM 219

Query: 184 LSFLVMAMQNPSFLVQLLQPK-ENNWRMAEAGT--MLEEVTEVGEP--IASDNMLVRYHP 238
           +SFL  A+  P FL Q +Q + E+N R+AE      +++  E  +P    +D  +V+Y P
Sbjct: 220 MSFLAKAVNRPGFLAQFVQQQNESNKRIAEGSKKRRIKQDIESQDPSVTPADGQIVKYQP 279

Query: 239 PIDETPKPVLK 249
            I+E  K +L+
Sbjct: 280 GINEAAKAMLR 290

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum lycopersicum (taxid: 4081)

>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2

 Score =  225 bits (573), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 120/245 (48%), Positives = 159/245 (64%), Gaps = 20/245 (8%)

Query: 14  PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIY 73
           PFL+K Y+MV+D +TD+I+SW  +N SF++WD  EFS  LLP+YFKH+NFSSF+RQLN Y
Sbjct: 52  PFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTY 111

Query: 74  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSE---------KLVE 124
           GFRK+D DRWEFAN+GF+R QKHLL  I RRK+ QG     S  QS+           + 
Sbjct: 112 GFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALS 171

Query: 125 PCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 184
            C ++    L +EVE LK  KN L QEL+KLRQ Q+T DNKL +L   +Q ME+ QQQ++
Sbjct: 172 SCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVMEQRQQQIM 231

Query: 185 SFLVMAMQNPSFLVQLLQPK-ENNWRMAEAGT---MLEEVTEVGEPI-------ASDNML 233
           SFL  A+QNP+FL Q +Q + ++N  + EA     + E+ T   E         ASD  +
Sbjct: 232 SFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKRRLREDSTAATESNSHSHSLEASDGQI 291

Query: 234 VRYHP 238
           V+Y P
Sbjct: 292 VKYQP 296

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|P41153|HSF8_SOLPE Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1

 Score =  223 bits (567), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 119/251 (47%), Positives = 160/251 (63%), Gaps = 16/251 (6%)

Query: 15  FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYG 74
           FL K Y+MVDD STD I+SW  +N SFV+WD  EF+  LLP+YFKH+NFSSF+RQLN YG
Sbjct: 42  FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYG 101

Query: 75  FRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKL-----------V 123
           FRK+D DRWEFAN+GF+R QKHLL +I RRK   G  Q++                   V
Sbjct: 102 FRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASV 161

Query: 124 EPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQM 183
             C ++    L +EVE LK  KN L QEL++LRQ Q++ DN+L  +  R+QGME  QQQM
Sbjct: 162 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQGMVQRLQGMELRQQQM 221

Query: 184 LSFLVMAMQNPSFLVQLLQPK-ENNWRMAEAGT--MLEEVTEVGEP--IASDNMLVRYHP 238
           +SFL  A+ +P FL Q +Q + E+N R+AE      +++  E  +P    +D  +V+Y P
Sbjct: 222 MSFLAKAVNSPGFLAQFVQQQNESNKRIAEGSKKRRIKQDIESQDPSVTPADGQIVKYQP 281

Query: 239 PIDETPKPVLK 249
            I+E  K +L+
Sbjct: 282 GINEAAKAMLR 292

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|O81821|HFA1B_ARATH Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2

 Score =  217 bits (552), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/248 (45%), Positives = 160/248 (64%), Gaps = 8/248 (3%)

Query: 10  NSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQ 69
           NSV PFL+K Y+MVDD  T+ ++SW   N SFV+W   EFS  LLP+YFKH+NFSSF+RQ
Sbjct: 23  NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQ 82

Query: 70  LNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKI 129
           LN YGFRK+D DRWEFAN+GF+R +K LL +I RRK +   + ++  Q     V  C ++
Sbjct: 83  LNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEV 142

Query: 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 189
               + +EVE LK  KN L QEL++LRQ Q+  +N+L  +  +VQ ME+ QQQM+SFL  
Sbjct: 143 GKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAK 202

Query: 190 AMQNPSFLVQLLQPKENNWRMAEAGT------MLEEVTEVGEPIAS--DNMLVRYHPPID 241
           A+Q+P FL QL+Q   N+      G+       ++E    G+ +A+  +  +VRY P I+
Sbjct: 203 AVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDNVANGLNRQIVRYQPSIN 262

Query: 242 ETPKPVLK 249
           E  + +L+
Sbjct: 263 EAAQNMLR 270

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCW5|HFA1E_ARATH Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2

 Score =  202 bits (514), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/213 (48%), Positives = 141/213 (66%), Gaps = 2/213 (0%)

Query: 2   VKSNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHS 61
            KS+    +S+ PFL+K Y+MVDD  TD ++SW   N SFV+W+V EF+ Q LP+YFKH+
Sbjct: 11  AKSSTAVMSSIPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHN 70

Query: 62  NFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEK 121
           NFSSF+RQLN YGFRK+D DRWEFAN+GF+R QK +L +I RRK  Q    ++   Q   
Sbjct: 71  NFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSS 130

Query: 122 LVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQ 181
            V  C ++    L +EVE L+  KN L QEL++LRQ Q+  ++ L  +  +V  ME+ QQ
Sbjct: 131 -VGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQ 189

Query: 182 QMLSFLVMAMQNPSFLVQLL-QPKENNWRMAEA 213
           QM+SFL  A+Q+P FL Q   Q  E N  ++E+
Sbjct: 190 QMMSFLAKAVQSPGFLNQFSQQSNEANQHISES 222

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/222 (46%), Positives = 140/222 (63%), Gaps = 16/222 (7%)

Query: 14  PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIY 73
           PFL+K YEMV+D STD +ISW  +  SF++WD  +FS  LLPR+FKHSNFSSFIRQLN Y
Sbjct: 31  PFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTY 90

Query: 74  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNT-QGSEQRKSLQQSEKLVEPCEKIDHS 132
           GFRK+D DRWEFAN+GF+  QKHLL  I RR+N  Q   Q+ S          C +I + 
Sbjct: 91  GFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSMNQQGS--------GACIEIGYY 142

Query: 133 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 192
            + +E+E LK  KN L  E++KLRQ Q++  N+++ + ++++  E+ Q QM+SFL     
Sbjct: 143 GMEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKIETQERKQVQMMSFLAKIFS 202

Query: 193 NPSFLVQLL--QPKENNWRMAEAG-----TMLEEVTEVGEPI 227
           NP+FL Q L  Q    + +  E G     TM   VT   +P+
Sbjct: 203 NPTFLQQYLDKQVHRKDKQRIEVGQKRRLTMTPSVTGSDQPM 244

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1

 Score =  197 bits (502), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 96/202 (47%), Positives = 137/202 (67%), Gaps = 2/202 (0%)

Query: 14  PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIY 73
           PFL K Y++V+D  T+ ++SW +SN SF++WD   FSV LLPR+FKH+NFSSF+RQLN Y
Sbjct: 61  PFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTY 120

Query: 74  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGS--EQRKSLQQSEKLVEPCEKIDH 131
           GFRK++ DRWEFAN+GF+R QKHLL NI RRK +  S   Q+    + + L   C ++  
Sbjct: 121 GFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVGR 180

Query: 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 191
             L  E+++L+  K  L  EL++LRQ Q++    L L+ ++++  E  Q+QM+SFL  AM
Sbjct: 181 YGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQKQMMSFLARAM 240

Query: 192 QNPSFLVQLLQPKENNWRMAEA 213
           QNP F+ QL++ KE    + EA
Sbjct: 241 QNPDFIQQLVEQKEKRKEIEEA 262

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
224099573	393	predicted protein [Populus trichocarpa]	0.971	0.964	0.584	1e-127
224111416	392	predicted protein [Populus trichocarpa]	0.971	0.966	0.576	1e-125
255573188	409	Heat shock factor protein, putative [Ric	0.969	0.924	0.546	1e-119
302398867	414	HSF domain class transcription factor [M	0.943	0.888	0.546	1e-110
449449028	396	PREDICTED: heat stress transcription fac	0.976	0.962	0.525	1e-106
356524620	364	PREDICTED: heat stress transcription fac	0.905	0.969	0.532	1e-105
356513038	358	PREDICTED: heat stress transcription fac	0.897	0.977	0.531	1e-103
359472583	424	PREDICTED: LOW QUALITY PROTEIN: heat str	0.971	0.893	0.501	1e-102
297838559	374	predicted protein [Arabidopsis lyrata su	0.925	0.965	0.536	1e-99
388504822	367	unknown [Lotus japonicus]	0.907	0.964	0.516	2e-97

>gi|224099573|ref|XP_002311537.1| predicted protein [Populus trichocarpa] gi|222851357|gb|EEE88904.1| predicted protein [Populus trichocarpa]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/402 (58%), Positives = 300/402 (74%), Gaps = 23/402 (5%)

Query: 1   MVKSNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKH 60
           MVKS+D G   VAPFL KCYEMV DEST+SIISW Q+N+SFVIWD+TEF V LLP+YFKH
Sbjct: 1   MVKSSDSG---VAPFLKKCYEMVGDESTNSIISWSQTNDSFVIWDMTEFCVHLLPKYFKH 57

Query: 61  SNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSE 120
           SN SSF+RQLNIYGFRKIDTD WEFANDGF+R QKHLL NI RRKN+QG++ RK +QQ +
Sbjct: 58  SNSSSFVRQLNIYGFRKIDTDHWEFANDGFIRGQKHLLKNISRRKNSQGTDNRKLVQQQD 117

Query: 121 KLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQ 180
             VE  E ++++ LWKEVENLK GK ALTQEL+KL Q+QETADNKLLLLRDR+QGMEK+Q
Sbjct: 118 NSVEHHESVENAGLWKEVENLKTGKIALTQELVKLSQHQETADNKLLLLRDRLQGMEKNQ 177

Query: 181 QQMLSFLVMAMQ-NPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPP 239
           QQMLSFLVMAMQ +P FL QLL  KENNWRMAE G+++E+V +  +P+AS+ M+V+Y PP
Sbjct: 178 QQMLSFLVMAMQKSPGFLAQLLHKKENNWRMAEPGSIVEQVADDADPLASEGMIVKYQPP 237

Query: 240 IDETPKPVLKPVTDSGNQMASD-TSDGMKDVFMNIDFLKMLMD-----ENQAPFIPLDLH 293
           +DET +P+  P     N   S+ +SDGMKD F + +F ++LMD     EN APF+  +L 
Sbjct: 238 VDETFEPMHAPPIGPENPRESNPSSDGMKDFFFSSEFTELLMDENLGFENHAPFVLPELA 297

Query: 294 NDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLL 353
           +DG WE+LLLANP + N       KD E D E  TD + +   AV G++L+R  + E L+
Sbjct: 298 DDGAWEQLLLANPFVANI------KDSETDYEEPTDAETDTGTAVPGTQLDRSQDFENLI 351

Query: 354 QELDKSQNFDNE-------LENARHLEFLTQKIELLASESNY 388
           ++++K  N +N+        E  R+LE LT+++ LLASE+N+
Sbjct: 352 EQMEKYHNLENQATDEGPHFEKPRNLEILTKQMGLLASETNH 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111416|ref|XP_002315847.1| predicted protein [Populus trichocarpa] gi|118487196|gb|ABK95426.1| unknown [Populus trichocarpa] gi|222864887|gb|EEF02018.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/401 (57%), Positives = 302/401 (75%), Gaps = 22/401 (5%)

Query: 1   MVKSNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKH 60
           MVKS++ G   VAPFL KCYEMVDDEST+SIISW Q+N+SFVIWD+TEFSV LLP+YFKH
Sbjct: 1   MVKSSESG---VAPFLKKCYEMVDDESTNSIISWSQTNDSFVIWDMTEFSVHLLPKYFKH 57

Query: 61  SNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSE 120
           SN SSF+RQLNIYGFRKIDTD+WEFANDGF+R QKHLL NICRRKN+QG++ RKS+QQ +
Sbjct: 58  SNSSSFVRQLNIYGFRKIDTDQWEFANDGFIRGQKHLLKNICRRKNSQGTDNRKSVQQQD 117

Query: 121 KLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQ 180
             +E CE +++  LWKEVE+LK G+NA+TQEL+KLRQ+QETADNKLLLLRDR+QGMEK+Q
Sbjct: 118 NSIEHCENVENVGLWKEVESLKTGRNAVTQELVKLRQHQETADNKLLLLRDRLQGMEKNQ 177

Query: 181 QQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPI 240
           QQMLSFLVMAMQ+P FL QLL  KENNWR+AE G+++E+  +  E +AS+ M+VRY PP+
Sbjct: 178 QQMLSFLVMAMQSPGFLAQLLNKKENNWRIAEPGSIVEQGADDAEQLASEGMIVRYQPPV 237

Query: 241 DETPKPVLKPVTDSGNQMASD-TSDGMKDVFMNIDFLKMLMD-----ENQAPFIPLDLHN 294
           DE  +PV  P     N   S+ +SDGMKD F++ DF+++LMD     EN   F   +L +
Sbjct: 238 DEMFEPVHAPPIGPENPRESNPSSDGMKDFFVSPDFMELLMDENLGFENHTSFGLPELAD 297

Query: 295 DGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQ 354
           DG WE+LLLANP ++N +DT+         E  TD + +    + G++LER  + E L++
Sbjct: 298 DGSWEQLLLANPFIENIKDTK------PGSEESTDTETDTGTTIVGTQLERSQSFEYLIE 351

Query: 355 ELDKSQNFDNE-------LENARHLEFLTQKIELLASESNY 388
            ++KS + +N+        E ++ LE LT+++ LLASE N+
Sbjct: 352 MMEKSNDLENKATDEGPHFEKSQKLEILTEQMGLLASEPNH 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573188|ref|XP_002527523.1| Heat shock factor protein, putative [Ricinus communis] gi|223533073|gb|EEF34832.1| Heat shock factor protein, putative [Ricinus communis]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/417 (54%), Positives = 297/417 (71%), Gaps = 39/417 (9%)

Query: 1   MVKSNDDGS-NSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFK 59
           MVKS +DGS +SVAPFL KCYEMVDD+ST+SIISW Q N++F+IWD+T+FS+QLLP+YFK
Sbjct: 1   MVKSGEDGSLSSVAPFLKKCYEMVDDDSTNSIISWSQDNDNFIIWDMTQFSIQLLPKYFK 60

Query: 60  HSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQS 119
           H+NFSSFIRQLNIYGFRK DTDRWEFANDGF+R +KHLL NICRRKN+QG++ RKSLQQ 
Sbjct: 61  HNNFSSFIRQLNIYGFRKTDTDRWEFANDGFIRGKKHLLKNICRRKNSQGADNRKSLQQQ 120

Query: 120 EKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKS 179
           +  VE C+KI +  LWKE+ENLK  KNAL QEL+KLRQ+QE  DNKL+LLRDR QGMEK+
Sbjct: 121 DNAVESCDKIGNEGLWKEIENLKTSKNALMQELIKLRQHQENTDNKLVLLRDRFQGMEKN 180

Query: 180 QQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPP 239
           QQQMLSFLVM MQ+P FL QLL PKENNWRMAE G+++E+  +  E  AS  M+V+Y PP
Sbjct: 181 QQQMLSFLVMVMQSPGFLAQLLHPKENNWRMAEPGSIVEQGAD-EEQWASGRMIVKYQPP 239

Query: 240 IDETPKPV----LKPVTDSGNQMASDT-------SDGMKDVFMNIDFLKMLMDEN----- 283
           IDE   P+      P+ +    M S+         DG+KD F++ DF+K+LMDEN     
Sbjct: 240 IDEMLTPMEVNYQPPIEEMPASMVSENPQESNPFPDGIKDSFLSPDFMKLLMDENLSSFE 299

Query: 284 -QAPFIPLDLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSE 342
             APFI  +  +DG WE+LLLA+    N E+++ D D E           E   A SG++
Sbjct: 300 TLAPFILPEFPDDGAWEQLLLASSFSQNVEESKRDADAE----------NEIGIAASGNQ 349

Query: 343 LERLN---NLELLLQELDKSQ-------NFDNELENARHLEFLTQKIELLASESNYK 389
           +++L+   N   L+++++K Q       +++N    +++LE +T+K+ LL SE N K
Sbjct: 350 VDQLDESENFGFLVEDIEKYQSLESKSMDYENHSGKSQNLEIVTKKMALLTSEINQK 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398867|gb|ADL36728.1| HSF domain class transcription factor [Malus x domestica]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/390 (54%), Positives = 281/390 (72%), Gaps = 22/390 (5%)

Query: 12  VAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLN 71
           V PFL KCYEMVDD+ +DSIISW ++ +SF I D+ +FS+ +LP+YFKHSNFSSF+RQLN
Sbjct: 19  VPPFLRKCYEMVDDKDSDSIISWSEAGDSFAILDMAQFSISMLPKYFKHSNFSSFMRQLN 78

Query: 72  IYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDH 131
           IYGFRKID DRW FAN+GF+R QKHLL NI RRK+ QG++Q+K LQQ +    P E I  
Sbjct: 79  IYGFRKIDPDRWVFANEGFIRGQKHLLKNIARRKHPQGTDQKKILQQKDNPDIPSENISE 138

Query: 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 191
           + LWKEVENLK  K AL QEL+KLRQ+QE + NKLLLLR+R++GMEK+QQQMLSFLVMAM
Sbjct: 139 NGLWKEVENLKTDKVALKQELVKLRQHQEISQNKLLLLRNRLRGMEKNQQQMLSFLVMAM 198

Query: 192 QNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPV 251
           Q+P FLVQLL PKEN+WR+AEAG ++E+  +   P+ASD  +VRY PP+ E PKP++ P 
Sbjct: 199 QSPGFLVQLLHPKENSWRIAEAGNIIEQCMDDDRPVASDGAIVRYQPPMIEAPKPLVPPN 258

Query: 252 TDSGNQMASDTS-DGMKDVFMNIDFLKMLMD------ENQAPFIPLDLHNDGEWEKLLLA 304
           + S  Q   D   DGM+D  +N DF+KMLMD      E  AP+   D+ +DG WE+ LLA
Sbjct: 259 SGSEKQPEVDAYMDGMEDFVVNPDFMKMLMDEKLSPVETHAPYTLPDISDDGAWEQFLLA 318

Query: 305 NPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNFDN 364
           +P L+N E T+       D E   D  ME EP V  S+L+   N + L++++ KSQNF +
Sbjct: 319 SPFLENIEGTK------EDGEEPADARMEVEPIV--SDLDESQNFDYLVEQMKKSQNFAS 370

Query: 365 E-------LENARHLEFLTQKIELLASESN 387
           +       +E++++LEF+T+++  LAS+SN
Sbjct: 371 DSTVDGSNMESSQNLEFITEQMGHLASDSN 400

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449028|ref|XP_004142267.1| PREDICTED: heat stress transcription factor A-8-like [Cucumis sativus] gi|449510587|ref|XP_004163707.1| PREDICTED: heat stress transcription factor A-8-like [Cucumis sativus]

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/400 (52%), Positives = 285/400 (71%), Gaps = 19/400 (4%)

Query: 1   MVKSNDD-GSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFK 59
           MVKS  +   +SVAPFL K Y+MVDD+ST+S+ISW  SN+SF I D+T FS+ LLP+YFK
Sbjct: 1   MVKSAAERQGSSVAPFLKKLYDMVDDDSTNSVISWTSSNDSFTILDITHFSLHLLPKYFK 60

Query: 60  HSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQS 119
           HSNFSSF+RQLNIYGFRKIDTD WEFA DGF++ QKHLL NI RRKN  G++QRK+ Q  
Sbjct: 61  HSNFSSFMRQLNIYGFRKIDTDCWEFATDGFIKGQKHLLKNIYRRKNIHGTDQRKASQPQ 120

Query: 120 EKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKS 179
           +      E  D+S LWKEVENLK  KNA+ QEL+KL+Q+QET++NKLLLLR+R+QGMEK+
Sbjct: 121 DNSEAQVELPDYSGLWKEVENLKIDKNAVMQELVKLKQHQETSENKLLLLRERLQGMEKN 180

Query: 180 QQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPP 239
           QQQMLSFLVMA+Q+P FLVQ LQPKE +WRMA+ G MLE++++  + + S+ M+VRY  P
Sbjct: 181 QQQMLSFLVMAVQSPGFLVQFLQPKEKSWRMADPGNMLEQISDDNQ-VPSNGMIVRYQRP 239

Query: 240 IDETPKPVLKPVTDSGNQMASDT-SDGMKDVFMNIDFLKMLMDE-----NQAPFIPLDLH 293
           +DE    +L PVT  G Q  S+   DGMKD F+N DF+K+LMDE     N + F+  D+ 
Sbjct: 240 LDELSTTLLPPVTGPGKQQESEPFPDGMKDFFLNSDFMKVLMDEKVCLDNHSQFVLPDVQ 299

Query: 294 NDGEWEKLLLANPILDNSEDT-QVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELL 352
            D  WE+LLLANP   NS++  +VD ++        ++DME     + +  E   + ELL
Sbjct: 300 -DVAWEQLLLANPFSGNSDNGRKVDHERRYTDSEDDELDMET--IDTQTHEENSEDFELL 356

Query: 353 LQELDKSQNF-------DNELENARHLEFLTQKIELLASE 385
           +++++K ++F       ++ +EN+  +  LTQ+++ LAS+
Sbjct: 357 IRQMEKCEDFGIQPRLDESYIENSNDVHLLTQQMDYLASD 396

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524620|ref|XP_003530926.1| PREDICTED: heat stress transcription factor A-8-like [Glycine max]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/370 (53%), Positives = 270/370 (72%), Gaps = 17/370 (4%)

Query: 1   MVKSNDDGSNSVA--PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYF 58
           MVKSN++GS SV+  PFL KCY+MV+D +TDSII W    +SFVI D+T+FSV LLP YF
Sbjct: 1   MVKSNENGSGSVSVPPFLKKCYDMVEDRNTDSIIRWSDGGDSFVISDITQFSVTLLPTYF 60

Query: 59  KHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQ 118
           KH+NFSSFIRQLNIYGFRKIDTD WEFAN+ FVR QKHLL NI RRK+   ++Q+K+L Q
Sbjct: 61  KHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKHLLKNIRRRKHPHSADQQKALPQ 120

Query: 119 SEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 178
            +   EP ++  +  LWKEVENLK  KN+LTQEL+KLRQ+QE+A+NKLLLL DR+QGMEK
Sbjct: 121 QDNCDEPSQEAPYHGLWKEVENLKLDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEK 180

Query: 179 SQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHP 238
            QQQMLSFLVM +Q+P F+VQLL PKENNW +AE+  +L++  +  +P+ASD M+++Y P
Sbjct: 181 HQQQMLSFLVMVVQSPGFMVQLLHPKENNWHLAESWNILDQDKQDDKPVASDGMIIKYKP 240

Query: 239 PIDETPKPVLKPVTDSGNQMASD--TSDGMKDVFMNIDFLKMLMD------ENQAPFIPL 290
           P+ E  KPV+ P++    +      +++G+KD+ ++ +FLK+L+D      EN +PF+  
Sbjct: 241 PVGEKLKPVV-PLSPGFEKQTEPELSAEGLKDLCVSSEFLKVLLDEKLSPLENHSPFLLP 299

Query: 291 DLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLE 350
           DL +DG WE+L L +P + N +D+    +KE   EGHT+  ME EP +S +  E     E
Sbjct: 300 DLPDDGSWEQLFLGSPFMGNIQDS----NKE--SEGHTNGGMEMEPTISETPNENSRTFE 353

Query: 351 LLLQELDKSQ 360
            ++ E++K++
Sbjct: 354 SMIVEMEKTR 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513038|ref|XP_003525221.1| PREDICTED: heat stress transcription factor A-8 [Glycine max]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/367 (53%), Positives = 261/367 (71%), Gaps = 17/367 (4%)

Query: 1   MVKSNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKH 60
           MVKS    S SV PFL KCY+MV D +TDS+I W     SFVI D+T+FSV LLP YFKH
Sbjct: 1   MVKS----SGSVPPFLKKCYDMVQDCNTDSVICWSHDGVSFVISDITQFSVTLLPTYFKH 56

Query: 61  SNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSE 120
           +NFSSFIRQLNIYGFRKIDTD WEFAN+ FVR QKHLL NI RRK+   ++Q+K+L Q +
Sbjct: 57  NNFSSFIRQLNIYGFRKIDTDSWEFANENFVRGQKHLLKNIHRRKHPHSADQQKALPQQD 116

Query: 121 KLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQ 180
              EP ++  +  LWKEVENLK  KN+LTQEL+KLRQ+QE+A++KLLLL DR+QGMEK Q
Sbjct: 117 NCDEPSQEAPNHGLWKEVENLKLDKNSLTQELVKLRQHQESAESKLLLLSDRLQGMEKHQ 176

Query: 181 QQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPI 240
           QQMLSFLVM +Q+P F+VQLL PKENNWR+AE+   L++  +  +P+ASD M+++Y PP+
Sbjct: 177 QQMLSFLVMVVQSPGFMVQLLHPKENNWRLAESWNRLDQDKQDDKPVASDGMIIKYKPPV 236

Query: 241 DETPKPVLKPVTDSGNQMASD-TSDGMKDVFMNIDFLKMLMD------ENQAPFIPLDLH 293
            E  KPV+       NQ   + ++DG+KD+ ++ +FLK+L+D      EN +PF+  DL 
Sbjct: 237 GEKLKPVVPLSPGFENQPEPELSADGLKDLCISSEFLKVLLDEKLSPLENHSPFLLPDLP 296

Query: 294 NDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLL 353
           +DG WE+L L +P L N +D++       + EGHT+  ME EP +S +  E     E ++
Sbjct: 297 DDGSWEQLFLGSPFLGNIQDSK------NESEGHTNSGMEMEPTISETPNENSRTFESMI 350

Query: 354 QELDKSQ 360
            E++K++
Sbjct: 351 IEMEKTR 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472583|ref|XP_003631170.1| PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor A-8-like [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/429 (50%), Positives = 274/429 (63%), Gaps = 50/429 (11%)

Query: 1   MVKSNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKH 60
           MVKS + GS  V PFL KCYEMVDDE++D+IISW  SN+SFVI D TEFS QLLP+YFKH
Sbjct: 1   MVKSTEAGS-VVPPFLKKCYEMVDDEASDAIISWNLSNDSFVIRDTTEFSHQLLPKYFKH 59

Query: 61  SNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSE 120
           +NFSSF+RQLNIYGFRKIDTD WEFAN+GF+R QKHLL NI RRK  QG +++KS  Q +
Sbjct: 60  NNFSSFMRQLNIYGFRKIDTDHWEFANEGFIRGQKHLLKNIRRRKQLQGQDKQKSSHQRD 119

Query: 121 KLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQ 180
           K    CE+I+ S LW +VE LK  +NALTQ+L+KLRQ+QETA++KLL+LR+R+QGMEK+Q
Sbjct: 120 KSAGACEEIEASKLWNDVEILKTDRNALTQQLVKLRQHQETAESKLLVLRERLQGMEKNQ 179

Query: 181 QQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAG-TMLEEVTEVGEPIASDNMLVRYHPP 239
           QQMLSFLVMAMQ+P FLVQ +QPKE NWRMAE G  MLE   E GEP ASD M+VRY PP
Sbjct: 180 QQMLSFLVMAMQSPEFLVQFMQPKEKNWRMAEVGKNMLERRAENGEPAASDVMIVRYQPP 239

Query: 240 IDETPKPVLKPVTDSGNQMASDTSDGM---------------------------KDVFMN 272
           +DETPKP+  P ++S   +    SDGM                            D FMN
Sbjct: 240 MDETPKPLPIPTSNSEKSLE---SDGMIVRYQPPMDETAKPLLMAKSNSEKSLESDFFMN 296

Query: 273 IDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDM 332
           IDF+K+LMD N         H +      L  + ILD          K  +++   D  M
Sbjct: 297 IDFMKILMDGNMGS----SEHQEPLILPDLPDDDILDQLLLENFADAKLDNQQAPIDSGM 352

Query: 333 EAEPAVSGSELERLNNLELL-------LQELDKSQNFDNE-------LENARHLEFLTQK 378
             +P V+ ++L+   + ELL       L+ ++K    + E        E ++H E LT++
Sbjct: 353 VMDPTVNQTQLDEPQHFELLNLEQKMPLKRMEKPYELEVESTLHGTRFEKSQHSELLTEQ 412

Query: 379 IELLASESN 387
           +   AS++N
Sbjct: 413 MGQXASDTN 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838559|ref|XP_002887161.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333002|gb|EFH63420.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 212/395 (53%), Positives = 260/395 (65%), Gaps = 34/395 (8%)

Query: 1   MVKSNDDGSNS----VAPFLNKCYEMVDDESTDSIISWGQS-NESFVIWDVTEFSVQLLP 55
           MVKS D G  S    VAPFL KCYEMVDD STDSIISW  S + SFVI D   FSVQLLP
Sbjct: 1   MVKSTDGGGGSSSSSVAPFLRKCYEMVDDSSTDSIISWSTSADNSFVILDTNVFSVQLLP 60

Query: 56  RYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKS 115
           +YFKHSNFSSFIRQLNIYGFRK+D DRWEFANDGFV+ QK LL N+ RRKN Q SEQ K 
Sbjct: 61  KYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVKGQKDLLKNVIRRKNVQSSEQSK- 119

Query: 116 LQQSEKLVEPC--EKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 173
             Q  +    C  EK + S LWKEV+ LK  K  L QEL+K+RQYQET D K+L L DRV
Sbjct: 120 --QENRSTSTCAQEKTEKSGLWKEVDILKGDKQVLAQELIKVRQYQETTDTKMLHLEDRV 177

Query: 174 QGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKE-NNWRMAEAGTMLEEVTEVGEPIASDNM 232
           QGME+SQQ+MLSFLVM M+NPS LVQLLQPKE N+WR AE  T++EEVT+ GE  +    
Sbjct: 178 QGMEESQQEMLSFLVMVMKNPSLLVQLLQPKEKNSWRKAEGATIVEEVTDEGESNSYGLP 237

Query: 233 LVRYHPPIDETPKPVLKPVTDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDL 292
           LV+Y PP D              N  A   ++ + D   N D LK  +DEN  P I  DL
Sbjct: 238 LVKYQPPSD--------------NGTAKSNTNDVNDFLRNADMLKFCLDENHVPLIIPDL 283

Query: 293 HNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELL 352
           ++DG WEKLLL +P        +  K + + K+G  D  +E E      EL++ + L+L+
Sbjct: 284 YDDGAWEKLLLLSP-----SRKKTKKQENIVKKGKDDSTLEEEED-GTMELDKSHMLKLI 337

Query: 353 LQELDKSQNFD-NEL--ENARHLEFLTQKIELLAS 384
            +E++K  +F+  +L  E +R+LE LT+++ELLAS
Sbjct: 338 SEEMEKPDDFEFGQLTPERSRNLEILTEQMELLAS 372

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504822|gb|AFK40477.1| unknown [Lotus japonicus]

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/372 (51%), Positives = 265/372 (71%), Gaps = 18/372 (4%)

Query: 1   MVKS--NDDGSNSVAPFLNKCYEMVDDESTDSIISWGQ-SNESFVIWDVTEFSVQLLPRY 57
           MVKS  N  GS+SVAPFLNKCY+MV+D+STDSIISW + S  +FVI D+T FSV LLP Y
Sbjct: 1   MVKSKENASGSSSVAPFLNKCYDMVEDDSTDSIISWTEPSGHTFVISDITAFSVTLLPTY 60

Query: 58  FKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQ 117
           FKH+NF+SFIRQLNIYGFRK+DTDRWEFAN+ FVR QKHLL NI RRK+   ++Q+K+L 
Sbjct: 61  FKHNNFASFIRQLNIYGFRKVDTDRWEFANENFVRGQKHLLKNIRRRKHPHVTDQQKALP 120

Query: 118 QSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 177
           +     EP  +  +  L KEVENLK+ +N+L QEL+ L Q+ E+A++K+L+L DR+QGME
Sbjct: 121 EHNNSDEPSREAPNHGLRKEVENLKSDRNSLMQELVHLSQHLESAESKMLVLSDRLQGME 180

Query: 178 KSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYH 237
           K QQQMLSFLVM +Q+P F+VQLL PKEN+WR+AEAG M +   E  +P+ASD M+V+Y 
Sbjct: 181 KHQQQMLSFLVMVVQSPGFMVQLLHPKENSWRLAEAGNMFDPGKEDDKPVASDGMIVQYK 240

Query: 238 PPIDETPKPVLK-PVTDSGNQMASD--TSDGMKDVFMNIDFLKMLMDE------NQAPFI 288
           PP+ E  K V+  P++   ++      ++D +KD+ ++ +FLK+L+DE      N +PF+
Sbjct: 241 PPVGEKRKHVIPIPLSPGFDRQPEPELSADRLKDLCISSEFLKVLLDEKVSPLDNHSPFL 300

Query: 289 PLDLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNN 348
             DL +DG WE+L L +P L+N EDT    D E ++     ++MEA    + +E  R+  
Sbjct: 301 LPDLPDDGSWEQLFLGSPFLENIEDT----DHENEEPTVGGMEMEATIPETPNEHSRI-- 354

Query: 349 LELLLQELDKSQ 360
            E ++ E++K+Q
Sbjct: 355 FESMIMEMEKTQ 366

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
TAIR|locus:2200171	374	HSFA8 "AT1G67970" [Arabidopsis	0.812	0.847	0.556	4.9e-85
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.617	0.496	0.462	6.1e-60
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.671	0.544	0.425	2.9e-58
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.525	0.414	0.527	1.8e-55
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.684	0.570	0.407	4e-51
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.512	0.492	0.490	1.7e-50
TAIR|locus:2117139	401	HSF A4A "AT4G18880" [Arabidops	0.492	0.478	0.464	3.3e-47
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.497	0.562	0.485	2.1e-45
TAIR|locus:2129276	466	AT-HSFA5 "AT4G13980" [Arabidop	0.474	0.396	0.458	1.8e-44
TAIR|locus:2077249	282	AT-HSFA7B "AT3G63350" [Arabido	0.523	0.723	0.419	3.6e-42

TAIR|locus:2200171 HSFA8 "AT1G67970" [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 193/347 (55%), Positives = 224/347 (64%)

Query:     1 MVKSNDDG-----SNSVAPFLNKCYEMVDDESTDSIISWGQS-NESFVIWDVTEFSVQLL 54
             MVKS D G     S+SVAPFL KCY+MVDD +TDSIISW  S + SFVI D T FSVQLL
Sbjct:     1 MVKSTDGGGGSSSSSSVAPFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLL 60

Query:    55 PRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRK 114
             P+YFKHSNFSSFIRQLNIYGFRK+D DRWEFANDGFVR QK LL N+ RRKN Q SEQ K
Sbjct:    61 PKYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQSSEQSK 120

Query:   115 SLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 174
                 S    +  EK   S LWKEV+ LK  K  L QEL+K+RQYQE  D K+L L DRVQ
Sbjct:   121 HESTSTTYAQ--EK---SGLWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRVQ 175

Query:   175 GMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENN-WRMA-EAGTMLEEVTEVGEPIASDNM 232
             GME+SQQ+MLSFLVM M+NPS LVQLLQPKE N WR A E   ++EEVT+ GE  +    
Sbjct:   176 GMEESQQEMLSFLVMVMKNPSLLVQLLQPKEKNTWRKAGEGAKIVEEVTDEGESNSYGLP 235

Query:   233 LVRYHPPIDETPKPVLKPVTDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDL 292
             LV Y PP D              N  A   S+ + D   N D LK  +DEN  P I  DL
Sbjct:   236 LVTYQPPSDN-------------NGTAKSNSNDVNDFLRNADMLKFCLDENHVPLIIPDL 282

Query:   293 HNDGEWEKLLLANPILDNSEDTQ--VDKDKE--VDKEGHTDVDMEAE 335
             ++DG WEKLLL +P    ++  +  V K K+    +E   D  ME +
Sbjct:   283 YDDGAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
 Identities = 117/253 (46%), Positives = 159/253 (62%)

Query:     9 SNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIR 68
             SN+  PFL+K Y+MVDD +TDSI+SW  +N SF++W   EF+  LLP+ FKH+NFSSF+R
Sbjct:    32 SNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVR 91

Query:    69 QLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQ----SEKLVE 124
             QLN YGFRK+D DRWEFAN+GF+R QKHLL +I RRK   G  Q     Q        V 
Sbjct:    92 QLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVS 151

Query:   125 PCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 184
              C ++    L +EVE LK  KN L QEL++LRQ Q++ DN+L  +  R+QGME  QQQ++
Sbjct:   152 ACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQLM 211

Query:   185 SFLVMAMQNPSFLVQLLQPK----ENNWRMAEAGTML----EEVTEVGEPIASDNMLVRY 236
             SFL  A+Q+P FL Q LQ +    E+N R+++         + +    +    D  +V+Y
Sbjct:   212 SFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKRDGIVRNNDSATPDGQIVKY 271

Query:   237 HPPIDETPKPVLK 249
              PP+ E  K + K
Sbjct:   272 QPPMHEQAKAMFK 284

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 115/270 (42%), Positives = 167/270 (61%)

Query:    10 NSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQ 69
             NSV PFL+K Y+MVDD  T+ ++SW   N SFV+W   EFS  LLP+YFKH+NFSSF+RQ
Sbjct:    23 NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQ 82

Query:    70 LNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKI 129
             LN YGFRK+D DRWEFAN+GF+R +K LL +I RRK +   + ++  Q     V  C ++
Sbjct:    83 LNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEV 142

Query:   130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 189
                 + +EVE LK  KN L QEL++LRQ Q+  +N+L  +  +VQ ME+ QQQM+SFL  
Sbjct:   143 GKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAK 202

Query:   190 AMQNPSFLVQLLQPKENNWRMAEAGTM------LEEVTEVGEPIAS--DNMLVRYHPPID 241
             A+Q+P FL QL+Q   N+      G+       ++E    G+ +A+  +  +VRY P I+
Sbjct:   203 AVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDNVANGLNRQIVRYQPSIN 262

Query:   242 ETPKPVLKPVTDSGNQMASDTSDGMKDVFM 271
             E  + +L+   ++      ++     D F+
Sbjct:   263 EAAQNMLRQFLNTSTSPRYESVSNNPDSFL 292

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 114/216 (52%), Positives = 152/216 (70%)

Query:     9 SNSVAP-FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFI 67
             +NS+ P FL+K Y+MV+D +TD+I+SW  +N SF++WD  EFS  LLP+YFKH+NFSSF+
Sbjct:    46 ANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFV 105

Query:    68 RQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKL----- 122
             RQLN YGFRK+D DRWEFAN+GF+R QKHLL  I RRK+ QG     S  QS++L     
Sbjct:   106 RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQG 165

Query:   123 ----VEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 178
                 +  C ++    L +EVE LK  KN L QEL+KLRQ Q+T DNKL +L   +Q ME+
Sbjct:   166 SMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVMEQ 225

Query:   179 SQQQMLSFLVMAMQNPSFLVQLLQPK-ENNWRMAEA 213
              QQQ++SFL  A+QNP+FL Q +Q + ++N  + EA
Sbjct:   226 RQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEA 261

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 113/277 (40%), Positives = 165/277 (59%)

Query:     3 KSNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSN 62
             KS+    +S+ PFL+K Y+MVDD  TD ++SW   N SFV+W+V EF+ Q LP+YFKH+N
Sbjct:    12 KSSTAVMSSIPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNN 71

Query:    63 FSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSE-QRKSLQQSEK 121
             FSSF+RQLN YGFRK+D DRWEFAN+GF+R QK +L +I RRK  Q    Q+  +Q S  
Sbjct:    72 FSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSS- 130

Query:   122 LVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQ 181
              V  C ++    L +EVE L+  KN L QEL++LRQ Q+  ++ L  +  +V  ME+ QQ
Sbjct:   131 -VGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQ 189

Query:   182 QMLSFLVMAMQNPSFLVQLLQPK-ENNWRMAEAGTM----LEEVTEVGEPIAS--DNMLV 234
             QM+SFL  A+Q+P FL Q  Q   E N  ++E+       +E+    G    +     +V
Sbjct:   190 QMMSFLAKAVQSPGFLNQFSQQSNEANQHISESNKKRRLPVEDQMNSGSHGVNGLSRQIV 249

Query:   235 RYHPPIDETPKPVLKPVTDSGNQMASDTSDGMKDVFM 271
             RY   +++    +L+ +    N  + ++       F+
Sbjct:   250 RYQSSMNDATNTMLQQIQQMSNAPSHESLSSNNGSFL 286

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 99/202 (49%), Positives = 139/202 (68%)

Query:    14 PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIY 73
             PFL K Y++V+D  T+ ++SW +SN SF++WD   FSV LLPR+FKH+NFSSF+RQLN Y
Sbjct:    61 PFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTY 120

Query:    74 GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEK--LVEPCEKIDH 131
             GFRK++ DRWEFAN+GF+R QKHLL NI RRK +  S Q +  Q SE+  L   C ++  
Sbjct:   121 GFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVGR 180

Query:   132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 191
               L  E+++L+  K  L  EL++LRQ Q++    L L+ ++++  E  Q+QM+SFL  AM
Sbjct:   181 YGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQKQMMSFLARAM 240

Query:   192 QNPSFLVQLLQPKENNWRMAEA 213
             QNP F+ QL++ KE    + EA
Sbjct:   241 QNPDFIQQLVEQKEKRKEIEEA 262

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 92/198 (46%), Positives = 127/198 (64%)

Query:     5 NDDG--SNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSN 62
             N+ G  S+S+ PFL K YEMVDD S+DSI+SW QSN+SF++W+  EFS  LLPR+FKH+N
Sbjct:     4 NNHGVSSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNN 63

Query:    63 FSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKL 122
             FSSFIRQLN YGFRK D ++WEFAND FVR Q HL+ NI RRK         SL   +  
Sbjct:    64 FSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSH----SLPNLQAQ 119

Query:   123 VEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 182
             + P    +   +  ++E L   K  L +EL K  + +E  + ++  L++R+Q MEK Q+ 
Sbjct:   120 LNPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKT 179

Query:   183 MLSFLVMAMQNPSFLVQL 200
             M+SF+   ++ P   + L
Sbjct:   180 MVSFVSQVLEKPGLALNL 197

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 98/202 (48%), Positives = 129/202 (63%)

Query:     7 DGSNSVAP--FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFS 64
             +G N   P  FL K YEMV+D +TD+++SW     SFV+WD  +FS  LLPRYFKHSNFS
Sbjct:    35 EGLNETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFS 94

Query:    65 SFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVE 124
             SFIRQLN YGFRKID DRWEFAN+GF+  QKHLL NI RR+N  G +     QQ   +  
Sbjct:    95 SFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRN-MGLQNVN--QQGSGM-- 149

Query:   125 PCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 184
              C ++       EVE LK     L  E+++LRQ Q ++ +++  +  R+   EK QQQM+
Sbjct:   150 SCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMM 209

Query:   185 SFLVMAMQNPSFLVQL-LQPKE 205
             +FL  A+ NP+F+ Q  +  KE
Sbjct:   210 TFLAKALNNPNFVQQFAVMSKE 231

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2129276 AT-HSFA5 "AT4G13980" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 89/194 (45%), Positives = 125/194 (64%)

Query:     4 SNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNF 63
             S  +G+   APFL K YEMVDD STD I+SW  +N SF++W+  EFS  LLP YFKH+NF
Sbjct:    13 SGGEGAGGPAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNF 72

Query:    64 SSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLV 123
             SSFIRQLN YGFRKID +RWEF ND F++DQKHLL NI RRK    S        +++  
Sbjct:    73 SSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIH-SHSHPPASSTDQ-- 129

Query:   124 EPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQM 183
                   + + L ++++ L   K A+  +LLK +Q +  A ++   + + V  ME  Q+++
Sbjct:   130 ------ERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKL 183

Query:   184 LSFLVMAMQNPSFL 197
             L+FL  A++NP+F+
Sbjct:   184 LNFLETAIRNPTFV 197

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2077249 AT-HSFA7B "AT3G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
 Identities = 91/217 (41%), Positives = 131/217 (60%)

Query:    13 APFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNI 72
             +PFL K +EMV D +T+ I+SW +   SFV+WD   FS  +LP YFKH+NFSSF+RQLN 
Sbjct:    27 SPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNT 86

Query:    73 YGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHS 132
             YGFRKI+ +RWEF N+GF+  Q+ LL +I RR +   S    SL  S+   +P E  D  
Sbjct:    87 YGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTS---SSSPPSLNYSQS--QP-EAHDPG 140

Query:   133 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 192
                 E+  L+  ++ L  E+  LRQ ++ A   +  +  R+ G EK Q+ M+SFL  A++
Sbjct:   141 V---ELPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQRHMMSFLRRAVE 197

Query:   193 NPSFLVQLLQPKENNWRMA---EAGTM-LEEVTEVGE 225
             NPS L Q+ + K +    A   +AG + +EEV  + E
Sbjct:   198 NPSLLQQIFEQKRDREEAAMIDQAGLIKMEEVEHLSE 234

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7U5	HSFA8_ARATH	No assigned EC number	0.5265	0.9256	0.9652	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VIII1211 hypothetical protein (393 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	390
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	8e-49
smart00415	105	smart00415, HSF, heat shock factor	3e-46
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	1e-25

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  159 bits (406), Expect = 8e-49
 Identities = 56/96 (58%), Positives = 72/96 (75%), Gaps = 2/96 (2%)

Query: 14  PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIY 73
           PFL+K YE+++D S D IISW +   SF+IWD  EF+ Q+LP+YFKH+NFSSF+RQLN+Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 74  GFRKIDTDR--WEFANDGFVRDQKHLLNNICRRKNT 107
           GF K+  DR  WEFA+  F R QK LL+ I RRK+ 
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKSE 96

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  153 bits (389), Expect = 3e-46
 Identities = 61/105 (58%), Positives = 72/105 (68%), Gaps = 11/105 (10%)

Query: 11  SVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQL 70
              PFL K Y +V+D STD IISW  S +SFVIWD  EF+  LLPRYFKH+NFSSF+RQL
Sbjct: 1   QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60

Query: 71  NIYGFRKID-----------TDRWEFANDGFVRDQKHLLNNICRR 104
           N+YGFRK+D           +D+WEFAN  FVR Q  LL NI R+
Sbjct: 61  NMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score =  104 bits (262), Expect = 1e-25
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 18/165 (10%)

Query: 11  SVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQL 70
               F++K Y+++++     +I W     SFVI D  EF+  +LPRYFKH NF+SF+RQL
Sbjct: 9   QPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQL 68

Query: 71  NIYGFRKI----------DTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSE 120
           N YGF K+          + + WEF N  F      LL  I R+K       R       
Sbjct: 69  NKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKK---APSNRVDSNNES 125

Query: 121 KLVEPCEKIDHSALWK-----EVENLKAGKNALTQELLKLRQYQE 160
           K      ++++  L +      + +L      L   L +L++Y  
Sbjct: 126 KDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEYNY 170

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	390
KOG0627	304	consensus Heat shock transcription factor [Transcr	100.0
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	100.0
smart00415	105	HSF heat shock factor.	100.0
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.97
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	96.15
smart00413	87	ETS erythroblast transformation specific domain. v	93.0
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	90.59
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.52
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	85.22
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	84.68
PF03310	121	Cauli_DNA-bind: Caulimovirus DNA-binding protein;	84.59
KOG3806	177	consensus Predicted transcription factor [Transcri	83.17
PRK15422	79	septal ring assembly protein ZapB; Provisional	82.85
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	82.7
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	81.46

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=100.00  E-value=1e-47  Score=373.51  Aligned_cols=224  Identities=42%  Similarity=0.622  Sum_probs=185.1

Q ss_pred             CCCCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeec--CCCcee
Q 016378            8 GSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKID--TDRWEF   85 (390)
Q Consensus         8 g~~~~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~--~d~weF   85 (390)
                      ....+++|+.|||.||+||++++||+|+++|+||||||+.+|++.+||+||||+||+|||||||+||||||+  +++|||
T Consensus         8 ~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF   87 (304)
T KOG0627|consen    8 EASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEF   87 (304)
T ss_pred             ccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceee
Confidence            334699999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             ecCCcccCcccccccccccCCCCCCcc---hhhhccccccccchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 016378           86 ANDGFVRDQKHLLNNICRRKNTQGSEQ---RKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETA  162 (390)
Q Consensus        86 ~H~~F~Rg~~~LL~~IkRkk~~~~~~~---~k~~~q~~~s~~~~~~~e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~l  162 (390)
                      +|++|+||+++||++|+||++.+....   .............+.......+..++..|+.+++.|+.|+++||+++..+
T Consensus        88 ~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~  167 (304)
T KOG0627|consen   88 SNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDAL  167 (304)
T ss_pred             cChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999998866432   11000000011122334566788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhcccccccccccccCccccccccCCCCCCCCCceEeeCCCCCC
Q 016378          163 DNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDE  242 (390)
Q Consensus       163 e~el~~L~eRLq~mEq~QqQMlsFLakamqnP~fl~ql~~~ke~~~r~~~~~~~~~~~~~~~~~~~~~~~iv~yqp~~~~  242 (390)
                      .++++.+.+++..++++|++|+.|+++++++|+|+.++.+.......+...+..           .....+++|+|..+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  236 (304)
T KOG0627|consen  168 RATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQPGNKNFKELNSE-----------PSYPKSVTRQPSAND  236 (304)
T ss_pred             HHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchhhhhhccccccCC-----------CCCccceeecCCCCc
Confidence            999999999999999999999999999999999999998765311111111110           005677777777776

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=100.00  E-value=3.8e-35  Score=245.16  Aligned_cols=93  Identities=53%  Similarity=0.982  Sum_probs=81.6

Q ss_pred             cHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeecCC---------Cce
Q 016378           14 PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTD---------RWE   84 (390)
Q Consensus        14 ~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~~d---------~we   84 (390)
                      .||.|||+||+||++++||+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+...         .|+
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~   80 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE   80 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence            49999999999999999999999999999999999999999999999999999999999999999653         399


Q ss_pred             eecCCcccCcccccccccccCC
Q 016378           85 FANDGFVRDQKHLLNNICRRKN  106 (390)
Q Consensus        85 F~H~~F~Rg~~~LL~~IkRkk~  106 (390)
                      |+|++|+||++++|..|+|+++
T Consensus        81 f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   81 FYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             EEETT-BTTBCCCTTTS---TT
T ss_pred             ECCcCccCCCHHHHhhCccCCC
Confidence            9999999999999999999875

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>smart00415 HSF heat shock factor

Probab=100.00  E-value=6.3e-35  Score=245.78  Aligned_cols=94  Identities=65%  Similarity=1.134  Sum_probs=90.8

Q ss_pred             CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeecC----------
Q 016378           11 SVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDT----------   80 (390)
Q Consensus        11 ~~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~~----------   80 (390)
                      .+|.|+.|||+||+|+++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..          
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~   80 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT   80 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence            3789999999999999999999999999999999999999999999999999999999999999999975          


Q ss_pred             -CCceeecCCcccCccccccccccc
Q 016378           81 -DRWEFANDGFVRDQKHLLNNICRR  104 (390)
Q Consensus        81 -d~weF~H~~F~Rg~~~LL~~IkRk  104 (390)
                       +.|+|+|++|+||+++||.+|+||
T Consensus        81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       81 SDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             CCceEEECcCccCcCHHHHHhCcCC
Confidence             789999999999999999999996

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.97  E-value=3.4e-33  Score=271.65  Aligned_cols=168  Identities=32%  Similarity=0.507  Sum_probs=122.3

Q ss_pred             CCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeec-C--------
Q 016378           10 NSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKID-T--------   80 (390)
Q Consensus        10 ~~~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~-~--------   80 (390)
                      ..++.|+.|||.||++|++.++|+|+|+|+||||+|++.|.+.|||+||||+||+|||||||+|||+||. .        
T Consensus         8 ~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n   87 (282)
T COG5169           8 SQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYN   87 (282)
T ss_pred             CchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccc
Confidence            3466899999999999999999999999999999999999999999999999999999999999999997 1        


Q ss_pred             -CCceeecCCcccCcccccccccccCCCCCCcchhhhccccccccchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 016378           81 -DRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQ  159 (390)
Q Consensus        81 -d~weF~H~~F~Rg~~~LL~~IkRkk~~~~~~~~k~~~q~~~s~~~~~~~e~~~L~~EVE~LK~dq~~L~qELv~LRQqQ  159 (390)
                       +.|+|.|++|++|..++|++|+|+|.+....   ...     .+.+.....    .+++.+-..+..+..++-+|+...
T Consensus        88 ~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~---~~~-----~~s~~~~~~----~~~~~~i~~~~~~~~~~S~l~~~~  155 (282)
T COG5169          88 ENVWEFGNKNFQLGMIELLKKIKRKKAPSNRV---DSN-----NESKDAMMN----IEVENIILPQSELYNSLSSLSNVN  155 (282)
T ss_pred             hhheeecCchhccCcHHHHHHhhhhhcCcccc---ccc-----CCCCccccc----hhhhhhhchhcccCcchhHHhhhh
Confidence             2499999999999999999999987764311   100     000100000    345555555555566666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378          160 ETADNKLLLLRDRVQGMEKSQQQMLSFLVM  189 (390)
Q Consensus       160 e~le~el~~L~eRLq~mEq~QqQMlsFLak  189 (390)
                      ++++..+..++..+..--..-..+.++|+.
T Consensus       156 ~~~~~~~~~lk~~~~~~~~~~~~~~~~l~~  185 (282)
T COG5169         156 QTLLLYLNELKEYNYRNLRTIDDINAMLAD  185 (282)
T ss_pred             HHHhhhhccccchhhhcccccchhhhcccC
Confidence            666656655554443333333344444433

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=96.15  E-value=0.007  Score=50.18  Aligned_cols=68  Identities=22%  Similarity=0.369  Sum_probs=51.6

Q ss_pred             HHHHhhccCCCCCCceEEcC-CCCeEEEecchhhhhhhcc--CCcCCCChhhHHhhhcccc----eeeecCCCcee
Q 016378           17 NKCYEMVDDESTDSIISWGQ-SNESFVIWDVTEFSVQLLP--RYFKHSNFSSFIRQLNIYG----FRKIDTDRWEF   85 (390)
Q Consensus        17 ~KLy~mVed~~~~~IIsWs~-~G~sFVI~d~~~F~~~VLP--kyFKhsnfsSFvRQLN~YG----FrKv~~d~weF   85 (390)
                      .=|.++|.|+++.++|+|.. .|.-|.|.||+++++. .-  +.-..-+|.++-|-|..|.    ..||...+..|
T Consensus         6 ~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~l-WG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y   80 (85)
T PF00178_consen    6 QFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARL-WGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVY   80 (85)
T ss_dssp             HHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHH-HHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEE
T ss_pred             HHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHH-HHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEE
Confidence            34678899999999999999 9999999999999863 22  3344568999999998874    35555555554

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>smart00413 ETS erythroblast transformation specific domain

Probab=93.00  E-value=0.17  Score=42.44  Aligned_cols=56  Identities=20%  Similarity=0.324  Sum_probs=44.3

Q ss_pred             HHhhccCCCCCCceEEcC-CCCeEEEecchhhhhhh-ccCCcCCCChhhHHhhhcccc
Q 016378           19 CYEMVDDESTDSIISWGQ-SNESFVIWDVTEFSVQL-LPRYFKHSNFSSFIRQLNIYG   74 (390)
Q Consensus        19 Ly~mVed~~~~~IIsWs~-~G~sFVI~d~~~F~~~V-LPkyFKhsnfsSFvRQLN~YG   74 (390)
                      |.++|.||++.++|+|.. ++.-|.+.|+++.++.- .-+.=..-||...-|-|..|-
T Consensus         8 L~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy   65 (87)
T smart00413        8 LLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY   65 (87)
T ss_pred             HHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence            678999999999999998 68899999999887631 123334567899999988773

variation of the helix-turn-helix motif

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.59  E-value=1.8  Score=35.33  Aligned_cols=51  Identities=24%  Similarity=0.355  Sum_probs=39.7

Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378          132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ  182 (390)
Q Consensus       132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQ  182 (390)
                      .-|.-||+.||..++.|++|.+.+++..+.++.+...+.+...+-..+.+.
T Consensus        21 ~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs   71 (79)
T COG3074          21 TLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA   71 (79)
T ss_pred             HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346679999999999999999999888888888777777666555444433

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=86.52  E-value=6  Score=34.93  Aligned_cols=60  Identities=22%  Similarity=0.377  Sum_probs=47.2

Q ss_pred             hhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378          128 KIDHSALWKEVENLKAGKNALTQELLKLRQYQET---ADNKLLLLRDRVQGMEKSQQQMLSFL  187 (390)
Q Consensus       128 ~~e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~---le~el~~L~eRLq~mEq~QqQMlsFL  187 (390)
                      +.+...+..++.+|...+..+..|+++|-...+.   ...++..|+..+..++.+.+-++.+|
T Consensus        29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell   91 (120)
T PF12325_consen   29 EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL   91 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567778888889999999999999999777754   45667778888888888888777665

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=85.22  E-value=7.3  Score=31.50  Aligned_cols=45  Identities=24%  Similarity=0.303  Sum_probs=28.2

Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378          132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM  176 (390)
Q Consensus       132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~m  176 (390)
                      ..|..||+.||.++..|..+...|+++++.+..+-.....||+++
T Consensus        21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen   21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666777777766666666666666666665555556666544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=84.68  E-value=4.3  Score=32.41  Aligned_cols=47  Identities=23%  Similarity=0.275  Sum_probs=28.7

Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378          132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK  178 (390)
Q Consensus       132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq  178 (390)
                      ..|..|...|+.+...+..|=..|.++++....++.+|-.||..||+
T Consensus        17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq   63 (65)
T TIGR02449        17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            34555555566666666666666666666666666666666666654

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part

Probab=84.59  E-value=2.3  Score=37.76  Aligned_cols=56  Identities=13%  Similarity=0.249  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhcccc
Q 016378          146 NALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPK  204 (390)
Q Consensus       146 ~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamqnP~fl~ql~~~k  204 (390)
                      ++++.|+..+++.+..+...+.+|-++++..++.+..|.++-|+++++   +...+.+-
T Consensus         2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkC   57 (121)
T PF03310_consen    2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKC   57 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhc
Confidence            456788899999999999999999999999999999999999999997   55555443

A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=83.17  E-value=2.7  Score=39.60  Aligned_cols=73  Identities=22%  Similarity=0.362  Sum_probs=50.6

Q ss_pred             CcHHHHHHhhccCCCCCCceEEcC-CCCeEEEecchhhhhhhc-cCCcCCCChhhHHhhhcccc----eeeecCCCcee
Q 016378           13 APFLNKCYEMVDDESTDSIISWGQ-SNESFVIWDVTEFSVQLL-PRYFKHSNFSSFIRQLNIYG----FRKIDTDRWEF   85 (390)
Q Consensus        13 ~~Fl~KLy~mVed~~~~~IIsWs~-~G~sFVI~d~~~F~~~VL-PkyFKhsnfsSFvRQLN~YG----FrKv~~d~weF   85 (390)
                      -....=|-++|.|++..++|+|.. +|--|++.||++-++.-= -+.=.+-||.-.-|-|..|=    -+||...+..|
T Consensus        69 iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyyY~kni~~Kv~Gkr~~Y  147 (177)
T KOG3806|consen   69 IQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYYYDKNILKKVPGKRFVY  147 (177)
T ss_pred             hhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCceeecCCceEEE
Confidence            334444567889999999999999 688999999999887421 23334567777778777652    24554444444

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=82.85  E-value=9.8  Score=31.58  Aligned_cols=52  Identities=25%  Similarity=0.373  Sum_probs=33.6

Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378          132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQM  183 (390)
Q Consensus       132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQM  183 (390)
                      .-|.-||+.||.++..|.+|...++.....+..+...|++-...-+.|.+.+
T Consensus        21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L   72 (79)
T PRK15422         21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   72 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566799999999999999988855555555555555544444443333333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=82.70  E-value=12  Score=34.02  Aligned_cols=61  Identities=26%  Similarity=0.317  Sum_probs=46.4

Q ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378          130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMA  190 (390)
Q Consensus       130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLaka  190 (390)
                      ....|..+++.+....+.|..||..++.+...+...++.+..|+...|..+-.+..+|..+
T Consensus        53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~  113 (140)
T PF10473_consen   53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK  113 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3455667777777777778888888888888888888888888888887777766666543

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=81.46  E-value=11  Score=36.23  Aligned_cols=63  Identities=14%  Similarity=0.276  Sum_probs=48.8

Q ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016378          130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ  192 (390)
Q Consensus       130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamq  192 (390)
                      +...|..++..|+++...|.....++.......+.++..|.+++...+...+.+.-++...+.
T Consensus        50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~  112 (251)
T PF11932_consen   50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID  112 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777777777777777777777788888888888888888888887777766655

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	390
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		2e-19
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		6e-16
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		2e-15
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		3e-15
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		3e-15
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		3e-14
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		3e-14
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		4e-14

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 11/108 (10%)
Query: 8   GSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFI 67
           G ++V  FL K + +V D  TD++I W  S  SF ++D  +F+ ++LP+YFKH+N +SF+
Sbjct: 13  GPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFV 72
Query: 68  RQLNIYGFRKI-----------DTDRWEFANDGFVRDQKHLLNNICRR 104
           RQLN+YGFRK+           + D  EF +  F+R Q+ LL NI R+
Sbjct: 73  RQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 11/92 (11%)
Query: 8  GSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFI 67
          GS +   F+NK + MV+D+S +  I W  S ES V+ +   F  ++LP+YFKHSNF+SF+
Sbjct: 8  GSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFV 67
Query: 68 RQLNIYGFRKI-----------DTDRWEFAND 88
          RQLN+YG+ K+           +  RWEF N+
Sbjct: 68 RQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 99

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 10/105 (9%)
Query: 10  NSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQ 69
           + V  FL K + +VDD  T+ +I W +  +SFVI +  +F+ +LLP  +KH+N +SFIRQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61
Query: 70  LNIYGFRKI----------DTDRWEFANDGFVRDQKHLLNNICRR 104
           LN+YGF KI          D D  EF++  F R+   LL+ I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 11/85 (12%)
Query: 15 FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYG 74
          F+NK + MV+D+S +  I W  S ES V+ +   F  ++LP+YFKHSNF+SF+RQLN+YG
Sbjct: 5  FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 64
Query: 75 FRKI-----------DTDRWEFAND 88
          + K+           +  RWEF N+
Sbjct: 65 WHKVQDVKSGSMLSNNDSRWEFENE 89

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 11/85 (12%)
Query: 15 FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYG 74
          F+NK + MV+D+S +  I W  S ES V+ +   F  ++LP+YFKHSNF+SF+RQLN+YG
Sbjct: 3  FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 62
Query: 75 FRKI-----------DTDRWEFAND 88
          + K+           +  RWEF N+
Sbjct: 63 WHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 11/86 (12%)
Query: 14 PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIY 73
           F+NK + MV+D+S +  I W  S ES V+ +   F  ++L +YFKHSNF+SF+RQLN+Y
Sbjct: 2  AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNMY 61
Query: 74 GFRKI-----------DTDRWEFAND 88
          G+ K+           +  RWEF N+
Sbjct: 62 GWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 11/86 (12%)
Query: 14 PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIY 73
           F+NK + MV+D+S +  I W  S ES V+ +   F  ++L +YFKHSNF+SF+RQLN+Y
Sbjct: 2  AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNMY 61
Query: 74 GFRKI-----------DTDRWEFAND 88
          G+ K+           +  RWEF N+
Sbjct: 62 GWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 11/85 (12%)
Query: 15 FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYG 74
          F+NK +  V+D+S +  I W  S ES V+ +   F  ++LP+YFKHSNF+SF+RQLN YG
Sbjct: 5  FVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNXYG 64
Query: 75 FRKI-----------DTDRWEFAND 88
          + K+           +  RWEF N+
Sbjct: 65 WHKVQDVKSGSXLSNNDSRWEFENE 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	390
2ldu_A	125	Heat shock factor protein 1; structural genomics,	1e-51
1hks_A	106	Heat-shock transcription factor; transcription reg	4e-51
3hts_B	102	Heat shock transcription factor; transcription reg	2e-43

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  167 bits (425), Expect = 1e-51
 Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 11/117 (9%)

Query: 3   KSNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSN 62
            S+  G ++V  FL K + +V D  TD++I W  S  SF ++D  +F+ ++LP+YFKH+N
Sbjct: 8   HSHMAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNN 67

Query: 63  FSSFIRQLNIYGFRKI-----------DTDRWEFANDGFVRDQKHLLNNICRRKNTQ 108
            +SF+RQLN+YGFRK+           + D  EF +  F+R Q+ LL NI R+  + 
Sbjct: 68  MASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSV 124

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  165 bits (421), Expect = 4e-51
 Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 10/105 (9%)

Query: 10  NSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQ 69
           + V  FL K + +VDD  T+ +I W +  +SFVI +  +F+ +LLP  +KH+N +SFIRQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 70  LNIYGFRKI----------DTDRWEFANDGFVRDQKHLLNNICRR 104
           LN+YGF KI          D D  EF++  F R+   LL+ I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score =  146 bits (369), Expect = 2e-43
 Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 11/99 (11%)

Query: 3   KSNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSN 62
           +    GS +   F+NK + MV+D+S +  I W  S ES V+ +   F  ++LP+YFKHSN
Sbjct: 3   RRASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSN 62

Query: 63  FSSFIRQLNIYGFRKI-----------DTDRWEFANDGF 90
           F+SF+RQLN+YG+ K+           +  RWEF N+  
Sbjct: 63  FASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	390
1hks_A	106	Heat-shock transcription factor; transcription reg	100.0
2ldu_A	125	Heat shock factor protein 1; structural genomics,	100.0
3hts_B	102	Heat shock transcription factor; transcription reg	99.98
2dao_A	118	Transcription factor ETV6; ETS domain, structural	90.2
1awc_A	110	Protein (GA binding protein alpha); complex (trans	89.14
4avp_A	106	ETS translocation variant 1; transcription, transc	88.99
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	88.36
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	88.02
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	87.93
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	86.36
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	85.19
1yo5_C	97	SAM pointed domain containing ETS transcription fa	84.24
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	83.5
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	81.84
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	81.51
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	81.44
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	81.06

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=100.00  E-value=2.6e-40  Score=278.45  Aligned_cols=95  Identities=44%  Similarity=0.796  Sum_probs=91.3

Q ss_pred             CCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeec----------
Q 016378           10 NSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKID----------   79 (390)
Q Consensus        10 ~~~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~----------   79 (390)
                      +++|+|+.|||+||+||++++||+|+++|+||||+|+.+|+++|||+||||+||+|||||||+||||||.          
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            4588999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCCceeecCCcccCccccccccccc
Q 016378           80 TDRWEFANDGFVRDQKHLLNNICRR  104 (390)
Q Consensus        80 ~d~weF~H~~F~Rg~~~LL~~IkRk  104 (390)
                      ++.|+|+|++|+||+++||.+|+||
T Consensus        82 ~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCceEEECcCccCcCHHHHhhCcCC
Confidence            4789999999999999999999997

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=281.90  Aligned_cols=104  Identities=44%  Similarity=0.824  Sum_probs=98.0

Q ss_pred             cCCCCCCCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeec----
Q 016378            4 SNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKID----   79 (390)
Q Consensus         4 s~~~g~~~~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~----   79 (390)
                      |-..+...+++||.|||+||+||++++||+|+++|++|||+|+.+|+++|||+||||+||+|||||||+|||+||.    
T Consensus         9 ~~~~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~   88 (125)
T 2ldu_A            9 SHMAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQ   88 (125)
T ss_dssp             SSCCSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCC
T ss_pred             cccccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccc
Confidence            4556777899999999999999999999999999999999999999999999999999999999999999999994    


Q ss_pred             -------CCCceeecCCcccCcccccccccccCCC
Q 016378           80 -------TDRWEFANDGFVRDQKHLLNNICRRKNT  107 (390)
Q Consensus        80 -------~d~weF~H~~F~Rg~~~LL~~IkRkk~~  107 (390)
                             ++.|+|+|++|+||+++||.+|+||++.
T Consensus        89 ~~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~  123 (125)
T 2ldu_A           89 GGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS  123 (125)
T ss_dssp             SSSSSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred             cccccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence                   4689999999999999999999999864

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.98  E-value=1e-33  Score=237.91  Aligned_cols=86  Identities=45%  Similarity=0.875  Sum_probs=77.8

Q ss_pred             cCCCCCCCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeec----
Q 016378            4 SNDDGSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKID----   79 (390)
Q Consensus         4 s~~~g~~~~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~----   79 (390)
                      +...|+..+|+|+.|||.||+||++++||+|+++|++|||+|+.+|+++|||+||||+||+||+||||+||||||.    
T Consensus         4 ~~s~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~   83 (102)
T 3hts_B            4 RASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKS   83 (102)
T ss_dssp             ------CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC----
T ss_pred             ccCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeecccc
Confidence            3456677899999999999999999999999999999999999999999999999999999999999999999997    


Q ss_pred             -------CCCceeecCC
Q 016378           80 -------TDRWEFANDG   89 (390)
Q Consensus        80 -------~d~weF~H~~   89 (390)
                             +++|||+|++
T Consensus        84 g~~~~~~~~~wEF~n~~  100 (102)
T 3hts_B           84 GSMLSNNDSRWEFENER  100 (102)
T ss_dssp             -----CCSCCEEEEECC
T ss_pred             CcccCCCcCCeEecCCC
Confidence                   6799999986

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.20  E-value=0.41  Score=41.06  Aligned_cols=79  Identities=19%  Similarity=0.311  Sum_probs=58.3

Q ss_pred             CCCCCcHHHHHHhhccCCCCCCceEEcC-CCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhccc---ce-eeecCCC
Q 016378            9 SNSVAPFLNKCYEMVDDESTDSIISWGQ-SNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIY---GF-RKIDTDR   82 (390)
Q Consensus         9 ~~~~~~Fl~KLy~mVed~~~~~IIsWs~-~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~Y---GF-rKv~~d~   82 (390)
                      ..+....-.=|.++|.|+++.++|+|.. ++.-|.+.|+++.++.-=. +.=..-||...-|-|..|   |. +||...+
T Consensus         5 ~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r   84 (118)
T 2dao_A            5 SSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQR   84 (118)
T ss_dssp             CCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSS
T ss_pred             cCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCe
Confidence            3445556667788999999999999988 4568999999988774222 333567899999999988   33 6666666


Q ss_pred             ceeec
Q 016378           83 WEFAN   87 (390)
Q Consensus        83 weF~H   87 (390)
                      ..|..
T Consensus        85 ~vY~F   89 (118)
T 2dao_A           85 LLFRF   89 (118)
T ss_dssp             SEEEE
T ss_pred             EEEEe
Confidence            66654

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=89.14  E-value=0.45  Score=40.31  Aligned_cols=69  Identities=17%  Similarity=0.249  Sum_probs=50.8

Q ss_pred             HHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhcccce----eeecCCCceeec
Q 016378           19 CYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIYGF----RKIDTDRWEFAN   87 (390)
Q Consensus        19 Ly~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~YGF----rKv~~d~weF~H   87 (390)
                      |.++|.|+++.++|+|...+.-|.+.|+++.++.-=. +.=..-||...-|-|..|.=    +||...+..|..
T Consensus         7 LleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~F   80 (110)
T 1awc_A            7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKF   80 (110)
T ss_dssp             HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEEE
T ss_pred             HHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEec
Confidence            5788999999999999999999999999888764222 22245678889998888742    445544555543

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=88.99  E-value=0.45  Score=40.04  Aligned_cols=74  Identities=19%  Similarity=0.358  Sum_probs=55.8

Q ss_pred             cHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhccc---ce-eeecCCCceeec
Q 016378           14 PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIY---GF-RKIDTDRWEFAN   87 (390)
Q Consensus        14 ~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~Y---GF-rKv~~d~weF~H   87 (390)
                      ....=|.++|+|+++.++|+|...+..|.+.|+++.++.--. +.=..-||..+.|-|..|   |. +||...+.+|..
T Consensus        13 ~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYkF   91 (106)
T 4avp_A           13 QLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF   91 (106)
T ss_dssp             CHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEEE
T ss_pred             eHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEEe
Confidence            344456788999999999999998889999999988863221 223567899999999887   33 677766666653

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=88.36  E-value=0.43  Score=40.25  Aligned_cols=81  Identities=12%  Similarity=0.247  Sum_probs=58.1

Q ss_pred             CCCCCCCCcHHHHHHhhccCCC-CCCceEEcC-CCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhcccc----eeee
Q 016378            6 DDGSNSVAPFLNKCYEMVDDES-TDSIISWGQ-SNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIYG----FRKI   78 (390)
Q Consensus         6 ~~g~~~~~~Fl~KLy~mVed~~-~~~IIsWs~-~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~YG----FrKv   78 (390)
                      ++|+++......=|.++|.||+ ..++|+|.. +..-|.+.|+++.++.-=. +.=..-||...-|-|..|.    -+||
T Consensus         2 ~sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv   81 (107)
T 1wwx_A            2 SSGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERV   81 (107)
T ss_dssp             CCCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred             CCCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEec
Confidence            4556667777788899999986 568999987 4679999999888874211 1224688999999998884    2556


Q ss_pred             cCCCceeec
Q 016378           79 DTDRWEFAN   87 (390)
Q Consensus        79 ~~d~weF~H   87 (390)
                      . .+.+|..
T Consensus        82 ~-~rlvY~F   89 (107)
T 1wwx_A           82 D-RRLVYKF   89 (107)
T ss_dssp             S-SSSEEEE
T ss_pred             c-ceEEEEe
Confidence            4 4555543

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=88.02  E-value=0.19  Score=41.42  Aligned_cols=74  Identities=12%  Similarity=0.301  Sum_probs=55.7

Q ss_pred             cHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhcccc---e-eeecCCCceeec
Q 016378           14 PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIYG---F-RKIDTDRWEFAN   87 (390)
Q Consensus        14 ~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~YG---F-rKv~~d~weF~H   87 (390)
                      ....=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. +.=..-||...-|-|..|-   . +||...+..|..
T Consensus         6 ~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~F   84 (93)
T 1bc8_C            6 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF   84 (93)
T ss_dssp             CHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEEE
T ss_pred             cHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence            344456789999999999999998889999999988874222 2235678999999998874   3 566656666654

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=87.93  E-value=0.78  Score=38.31  Aligned_cols=73  Identities=18%  Similarity=0.325  Sum_probs=54.2

Q ss_pred             HHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhcccc---e-eeecCCCceeec
Q 016378           15 FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIYG---F-RKIDTDRWEFAN   87 (390)
Q Consensus        15 Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~YG---F-rKv~~d~weF~H   87 (390)
                      ...=|.++|+|+++.++|+|...+.-|.+.|+++.++.--. +.=..-||.-+.|-|..|-   . +||...+..|..
T Consensus        10 LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYkF   87 (102)
T 2ypr_A           10 LWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRF   87 (102)
T ss_dssp             HHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEEE
T ss_pred             HHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence            44556788999999999999998999999999988863211 2225678999999998873   3 666655655543

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=86.36  E-value=4.9  Score=32.29  Aligned_cols=53  Identities=26%  Similarity=0.391  Sum_probs=35.6

Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378          132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML  184 (390)
Q Consensus       132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMl  184 (390)
                      .-|.-||+.||.++..|.++...++...+.+..+...|++....-..+.+.++
T Consensus        23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL   75 (81)
T 2jee_A           23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566899999999999998888666655566666555555555444444443

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=85.19  E-value=0.81  Score=38.03  Aligned_cols=61  Identities=21%  Similarity=0.328  Sum_probs=46.6

Q ss_pred             cHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhcccc
Q 016378           14 PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIYG   74 (390)
Q Consensus        14 ~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~YG   74 (390)
                      ....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +.=..-||...-|-|..|-
T Consensus         7 ~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY   68 (98)
T 1fli_A            7 QLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             CSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             eHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence            344446677899999999999999999999999888763221 2225678889999888874

>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21

Probab=84.24  E-value=0.49  Score=39.25  Aligned_cols=70  Identities=14%  Similarity=0.103  Sum_probs=49.8

Q ss_pred             CCCCCCCCcHHHHHHhhccCCC-CCCceEEcC-CCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhcccce
Q 016378            6 DDGSNSVAPFLNKCYEMVDDES-TDSIISWGQ-SNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIYGF   75 (390)
Q Consensus         6 ~~g~~~~~~Fl~KLy~mVed~~-~~~IIsWs~-~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~YGF   75 (390)
                      +.|+++......=|.++|.||+ ..++|+|.. ++.-|.+.|+++.++.-=. +.=..-||...-|-|..|--
T Consensus         4 ~~~~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~   76 (97)
T 1yo5_C            4 DALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYK   76 (97)
T ss_dssp             -----CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTT
T ss_pred             CCCCCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence            3444556667777889999986 479999985 6789999999988874221 23346789999999988853

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=83.50  E-value=1.8  Score=36.19  Aligned_cols=72  Identities=8%  Similarity=0.209  Sum_probs=50.4

Q ss_pred             HHHHHhhccCCC-CCCceEEcCC-CCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhcccc---e-eeecCCCceeec
Q 016378           16 LNKCYEMVDDES-TDSIISWGQS-NESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIYG---F-RKIDTDRWEFAN   87 (390)
Q Consensus        16 l~KLy~mVed~~-~~~IIsWs~~-G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~YG---F-rKv~~d~weF~H   87 (390)
                      ..=|.++|.|++ ..++|+|... ..-|.+.||++.++.--. +.=..-||..+.|-|..|-   . +||...+.+|..
T Consensus         8 wqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~F   86 (103)
T 3jtg_A            8 WEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKF   86 (103)
T ss_dssp             HHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEEB
T ss_pred             HHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEEe
Confidence            344567889987 5689999984 569999999988864111 1125788999999998873   2 556555555543

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=81.84  E-value=0.94  Score=40.13  Aligned_cols=76  Identities=21%  Similarity=0.260  Sum_probs=57.5

Q ss_pred             CCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhcccce----eeecCCCceee
Q 016378           12 VAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIYGF----RKIDTDRWEFA   86 (390)
Q Consensus        12 ~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~YGF----rKv~~d~weF~   86 (390)
                      ......=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. +.=..-||...-|-|..|-=    +||...+..|.
T Consensus        39 ~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY~  118 (146)
T 1gvj_A           39 PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYR  118 (146)
T ss_dssp             SCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSEEE
T ss_pred             ceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence            45566667888999999999999999999999999998874222 22246789999999988743    46666666666


Q ss_pred             c
Q 016378           87 N   87 (390)
Q Consensus        87 H   87 (390)
                      .
T Consensus       119 F  119 (146)
T 1gvj_A          119 F  119 (146)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21

Probab=81.51  E-value=1  Score=40.29  Aligned_cols=76  Identities=12%  Similarity=0.282  Sum_probs=57.0

Q ss_pred             cHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhcccc---e-eeecCCCceeecC
Q 016378           14 PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIYG---F-RKIDTDRWEFAND   88 (390)
Q Consensus        14 ~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~YG---F-rKv~~d~weF~H~   88 (390)
                      ....=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. +.=..-||...-|-|..|-   + +||...+..|..-
T Consensus         7 ~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF~   86 (157)
T 1hbx_G            7 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKFV   86 (157)
T ss_dssp             CHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEES
T ss_pred             cHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEeeC
Confidence            344456788999999999999998889999999988874222 2335678999999998874   3 5666666676654


Q ss_pred             C
Q 016378           89 G   89 (390)
Q Consensus        89 ~   89 (390)
                      .
T Consensus        87 ~   87 (157)
T 1hbx_G           87 S   87 (157)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=81.44  E-value=1.3  Score=40.13  Aligned_cols=76  Identities=21%  Similarity=0.269  Sum_probs=55.7

Q ss_pred             CCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhcccce----eeecCCCceee
Q 016378           12 VAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIYGF----RKIDTDRWEFA   86 (390)
Q Consensus        12 ~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~YGF----rKv~~d~weF~   86 (390)
                      ......=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. +.=..-||...-|-|..|-=    +||...+..|.
T Consensus        64 ~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY~  143 (171)
T 2nny_A           64 PIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYR  143 (171)
T ss_dssp             SCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTEEE
T ss_pred             ceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEEEE
Confidence            34455556788999999999999999999999999998874222 22245779999999988753    45655556665


Q ss_pred             c
Q 016378           87 N   87 (390)
Q Consensus        87 H   87 (390)
                      .
T Consensus       144 F  144 (171)
T 2nny_A          144 F  144 (171)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=81.06  E-value=8.2  Score=28.58  Aligned_cols=45  Identities=22%  Similarity=0.242  Sum_probs=38.3

Q ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378          130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ  174 (390)
Q Consensus       130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq  174 (390)
                      .+..|..+|+.||+++..|.+||..--+|...++++-..|.+-+.
T Consensus         4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk   48 (54)
T 1deb_A            4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK   48 (54)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence            356788999999999999999999988888888888888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	390
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	1e-37
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	2e-33

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  129 bits (326), Expect = 1e-37
 Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 10/105 (9%)

Query: 10  NSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQ 69
           + V  FL K + +VDD  T+ +I W +  +SFVI +  +F+ +LLP  +KH+N +SFIRQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 70  LNIYGFRKI----------DTDRWEFANDGFVRDQKHLLNNICRR 104
           LN+YGF KI          D D  EF++  F R+   LL+ I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score =  118 bits (296), Expect = 2e-33
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 11/86 (12%)

Query: 14 PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIY 73
           F+NK + MV+D+S +  I W  S ES V+ +   F  ++LP+YFKHSNF+SF+RQLN+Y
Sbjct: 4  AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMY 63

Query: 74 GFRKI-----------DTDRWEFAND 88
          G+ K+           +  RWEF N+
Sbjct: 64 GWHKVQDVKSGSMLSNNDSRWEFENE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	390
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	100.0
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.96
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	95.24
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	92.02
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	89.57
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	89.55
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	88.18
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	87.41
d1puee_	88	Transcription factor PU.1, residues 171-259 {Mouse	81.43

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=6.2e-37  Score=255.53  Aligned_cols=95  Identities=44%  Similarity=0.796  Sum_probs=90.5

Q ss_pred             CCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeec----------
Q 016378           10 NSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKID----------   79 (390)
Q Consensus        10 ~~~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~----------   79 (390)
                      +++|+|+.|||+||+|+++++||+|+++|++|||+|+..|+++|||+||+|++|+||+||||+|||+||.          
T Consensus         2 ~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~   81 (106)
T d1hksa_           2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCC
Confidence            4589999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCCceeecCCcccCccccccccccc
Q 016378           80 TDRWEFANDGFVRDQKHLLNNICRR  104 (390)
Q Consensus        80 ~d~weF~H~~F~Rg~~~LL~~IkRk  104 (390)
                      ++.|+|+|++|+||+++||..|+||
T Consensus        82 ~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCccEEECccccCCCHHHHhhCcCC
Confidence            3578999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.96  E-value=8.3e-31  Score=214.44  Aligned_cols=78  Identities=47%  Similarity=0.944  Sum_probs=74.1

Q ss_pred             CCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeec-----------C
Q 016378           12 VAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKID-----------T   80 (390)
Q Consensus        12 ~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~-----------~   80 (390)
                      .|+|+.|||+||+|+++++||+|+++|++|||+|+..|++.|||+||+|+||+||+||||+|||+||.           +
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~   81 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNND   81 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CC
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCC
Confidence            58899999999999999999999999999999999999999999999999999999999999999984           3


Q ss_pred             CCceeecCC
Q 016378           81 DRWEFANDG   89 (390)
Q Consensus        81 d~weF~H~~   89 (390)
                      +.|||+|+.
T Consensus        82 ~~~eF~h~~   90 (92)
T d2htsa_          82 SRWEFENER   90 (92)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEEecCC
Confidence            579999984

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=95.24  E-value=0.0041  Score=51.09  Aligned_cols=75  Identities=15%  Similarity=0.335  Sum_probs=54.9

Q ss_pred             CCcHHHHHHhhcc----CCCCCCc--eEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeecC---CC
Q 016378           12 VAPFLNKCYEMVD----DESTDSI--ISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDT---DR   82 (390)
Q Consensus        12 ~~~Fl~KLy~mVe----d~~~~~I--IsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~~---d~   82 (390)
                      -..|+.|||.+|.    +|++...  |.|..++. |+| +...|+. +|-     .+-.|--.-|..|||..+..   +.
T Consensus        27 ~~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~-lLg-----iK~ntlN~Nfr~~gF~q~~~d~~~~   98 (114)
T d1pp7u_          27 NSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVAL-VMG-----IKLNTLNVNLRDLAFEQLQHDKGGW   98 (114)
T ss_dssp             GGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHH-HHT-----CCHHHHHHHHHHTTCEEEEEEETTE
T ss_pred             cCCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHH-HHC-----CChhhhcCcccccCceeeecCCCcc
Confidence            4689999999997    4433322  79999996 888 8899987 443     12355566778899999864   45


Q ss_pred             ceeecCCcccCc
Q 016378           83 WEFANDGFVRDQ   94 (390)
Q Consensus        83 weF~H~~F~Rg~   94 (390)
                      |.|+++.|.|..
T Consensus        99 ~~w~~~~F~~nS  110 (114)
T d1pp7u_          99 TQWKRSGFTRNS  110 (114)
T ss_dssp             EEEECTTEETTE
T ss_pred             eeeccCCccccc
Confidence            677999998753

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.02  E-value=0.084  Score=42.80  Aligned_cols=68  Identities=18%  Similarity=0.295  Sum_probs=49.6

Q ss_pred             HHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhcccc----eeeecCCCceee
Q 016378           19 CYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIYG----FRKIDTDRWEFA   86 (390)
Q Consensus        19 Ly~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~YG----FrKv~~d~weF~   86 (390)
                      |.++|.|+++.++|+|...+.-|.+.|+++.++.-=. +.=..-||...-|-|..|.    -+||...+.+|.
T Consensus         7 L~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY~~~il~Kv~g~rl~Y~   79 (110)
T d1awca_           7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK   79 (110)
T ss_dssp             HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred             HHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHHhcccEEecCCcEEEEe
Confidence            5788999999999999999889999999998763211 2234578889999888874    234444445553

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.57  E-value=0.13  Score=39.93  Aligned_cols=67  Identities=19%  Similarity=0.400  Sum_probs=49.0

Q ss_pred             HHhhccCCCCCCceEEcC-CCCeEEEecchhhhhhhc-cCCcCCCChhhHHhhhcccc----eeeecCCCcee
Q 016378           19 CYEMVDDESTDSIISWGQ-SNESFVIWDVTEFSVQLL-PRYFKHSNFSSFIRQLNIYG----FRKIDTDRWEF   85 (390)
Q Consensus        19 Ly~mVed~~~~~IIsWs~-~G~sFVI~d~~~F~~~VL-PkyFKhsnfsSFvRQLN~YG----FrKv~~d~weF   85 (390)
                      |.++|.|+++.++|+|.. ++.-|.+.|+++.++.== -+.=..-||...-|-|..|-    .+||...+.+|
T Consensus         7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyyY~~~il~Kv~g~rl~Y   79 (86)
T d1duxc_           7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVY   79 (86)
T ss_dssp             HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHHHTTTSEEECTTSTTEE
T ss_pred             HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcccEeeccCcEEEE
Confidence            456788999999999999 688999999999887421 12333478999999998773    34555445554

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.55  E-value=0.11  Score=41.36  Aligned_cols=62  Identities=21%  Similarity=0.319  Sum_probs=46.0

Q ss_pred             CcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhcc-CCcCCCChhhHHhhhcccc
Q 016378           13 APFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLP-RYFKHSNFSSFIRQLNIYG   74 (390)
Q Consensus        13 ~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLP-kyFKhsnfsSFvRQLN~YG   74 (390)
                      ..-..=|.++|.|+++.++|+|...+.-|.+.|+++.++.-=. +.=..-||...-|-|..|-
T Consensus         6 ~~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyYY   68 (98)
T d1flia_           6 IQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             CCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Confidence            3344556788999999999999888888999999988763211 2223458888888887763

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.18  E-value=0.14  Score=43.76  Aligned_cols=68  Identities=13%  Similarity=0.357  Sum_probs=53.9

Q ss_pred             HHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhc-cCCcCCCChhhHHhhhcccc----eeeecCCCceee
Q 016378           19 CYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLL-PRYFKHSNFSSFIRQLNIYG----FRKIDTDRWEFA   86 (390)
Q Consensus        19 Ly~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VL-PkyFKhsnfsSFvRQLN~YG----FrKv~~d~weF~   86 (390)
                      |.++|.|+++.++|+|...+.-|.+.|+++.++.-= -|.=..-||...-|-|..|-    .+||...+.+|.
T Consensus        10 L~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Yk   82 (155)
T d1hbxg_          10 LLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   82 (155)
T ss_dssp             TTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred             HHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEEE
Confidence            567889999999999999888999999999987421 12224588999999998873    467777777776

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.41  E-value=0.17  Score=42.59  Aligned_cols=72  Identities=22%  Similarity=0.326  Sum_probs=52.6

Q ss_pred             HHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhc-cCCcCCCChhhHHhhhcccc----eeeecCCCceee
Q 016378           15 FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLL-PRYFKHSNFSSFIRQLNIYG----FRKIDTDRWEFA   86 (390)
Q Consensus        15 Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VL-PkyFKhsnfsSFvRQLN~YG----FrKv~~d~weF~   86 (390)
                      .-.=|.++|.|+++.++|+|...+..|.+.|+++.++.-= -|.=..-||...-|-|..|-    -+||...+..|.
T Consensus        42 LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY~k~il~Kv~g~rl~Yk  118 (142)
T d1gvja_          42 LWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYR  118 (142)
T ss_dssp             HHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSEEE
T ss_pred             HHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHhhcceEEecCCcEEEEe
Confidence            4445678899999999999999888899999999876321 12223478999999988774    355555555554

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.43  E-value=0.18  Score=39.24  Aligned_cols=55  Identities=13%  Similarity=0.256  Sum_probs=38.7

Q ss_pred             HHhhccCCCCCCceEEcCCCC-eEEEe--cchhhhhhhc-cC-CcCCCChhhHHhhhccc
Q 016378           19 CYEMVDDESTDSIISWGQSNE-SFVIW--DVTEFSVQLL-PR-YFKHSNFSSFIRQLNIY   73 (390)
Q Consensus        19 Ly~mVed~~~~~IIsWs~~G~-sFVI~--d~~~F~~~VL-Pk-yFKhsnfsSFvRQLN~Y   73 (390)
                      |.++|.||++.++|+|...+. .|-+.  ++++.++.== -+ .=.+-||...-|-|..|
T Consensus         8 L~~LL~d~~~~~~I~Wt~~~~g~F~fv~~~~e~VA~lWG~~K~Nr~~MnYeklSRaLRyY   67 (88)
T d1puee_           8 LLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNY   67 (88)
T ss_dssp             HHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHcCccCCCceEeeCCCCceEEEEeCCHHHHHHHHHhhcCCCCCCcHHHHHHHHHHH
Confidence            567889999999999977654 45554  5777766311 11 22456899999999877