Citrus Sinensis ID: 016399

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
MADTAGSVSTRRMCSVPEKLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLLPFAYFLEKKERPAMTLNFALQFILLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAPPLNQIQPDSLTSTIFLSLGDAKGKNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYTCFFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKFASKEKVMIQSTQDHGNNSRSASHIKTSLTQPLLPPSTENV
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEHHHHHHHHHEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHEEcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHEEHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcHHHHHcccccccccccccccccccccccccccccccccc
madtagsvstrrmcsvpEKLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLLPFayflekkerpamTLNFALQFILLALVGITANQGFYLlglentsptfasaIQNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVitlykgptiyspapplnqiqpdsltSTIFLSlgdakgknwTLGCVYLIGHClswsgwlvmqapvlkkyparlsvtAYTCFFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCidrggpvfvAVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKFASKEKVMIQSTqdhgnnsrsashiktsltqpllppstenv
madtagsvstrrmcSVPEKLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLLPFAYFLEKKERPAMTLNFALQFILLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAPPLNQIQPDSLTSTIFLSLGDAKGKNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYTCFFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKFASKEKVMIQStqdhgnnsrsashiktsltqpllppstenv
MADTAGSVSTRRMCSVPEKLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIafllllpfayflEKKERPAMTLNFALQFILLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAPPLNQIQPDSLTSTIFLSLGDAKGKNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYTCFFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALGEEFYlggiigavlivvglylvlwgkseekkfaskekVMIQSTQDHGNNSRSASHIKTSLTQPLLPPSTENV
*************CSVPEKLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLLPFAYFLEKKERPAMTLNFALQFILLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAPPLNQIQPDSLTSTIFLSLGDAKGKNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYTCFFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWGK**********************************************
***************VPEKLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLLPFAYFLEKKERPAMTLNFALQFILLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAPP*****************GDAKGKNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYTCFFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWG***********************************************
***********RMCSVPEKLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLLPFAYFLEKKERPAMTLNFALQFILLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAPPLNQIQPDSLTSTIFLSLGDAKGKNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYTCFFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKFASKEK********************TSLTQPLLPPSTENV
**********RRMCSVPEKLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLLPFAYFLEKKERPAMTLNFALQFILLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAP***********************KNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYTCFFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWGKSEE*******************************************
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MADTAGSVSTRRMCSVPEKLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLLPFAYFLEKKERPAMTLNFALQFILLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAPPLNQIQPDSLTSTIFLSLGDAKGKNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYTCFFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKFASKEKVMIQSTQDHGNNSRSASHIKTSLTQPLLPPSTENV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query390 2.2.26 [Sep-21-2011]
Q94AP3389 Protein WALLS ARE THIN 1 yes no 0.992 0.994 0.744 1e-169
Q6J163410 Auxin-induced protein 5NG N/A no 0.953 0.907 0.609 1e-135
F4J9A3369 WAT1-related protein At3g no no 0.920 0.972 0.556 1e-120
Q9LV20383 WAT1-related protein At3g no no 0.889 0.906 0.556 1e-113
O80638374 WAT1-related protein At2g no no 0.887 0.925 0.391 5e-67
Q9M0B8373 WAT1-related protein At4g no no 0.897 0.938 0.383 1e-66
Q9FL41402 WAT1-related protein At5g no no 0.917 0.890 0.374 1e-66
Q9SUF1384 WAT1-related protein At4g no no 0.902 0.916 0.377 2e-64
Q501F8373 WAT1-related protein At4g no no 0.866 0.906 0.364 1e-63
Q9LPF1370 WAT1-related protein At1g no no 0.864 0.910 0.362 3e-63
>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  595 bits (1533), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 292/392 (74%), Positives = 335/392 (85%), Gaps = 5/392 (1%)

Query: 1   MADTAGSVSTRRMCSVPEKLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNII 60
           MAD   +   R +  VPEKLQLH+AM+ LQFGYAGFHVVSRAALNMGISKLVFPVYRNII
Sbjct: 1   MADNTDN--RRSLWGVPEKLQLHIAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNII 58

Query: 61  AFLLLLPFAYFLEKKERPAMTLNFALQFILLALVGITANQGFYLLGLENTSPTFASAIQN 120
           A LLLLPFAYFLEKKERPA+TLNF +QF  LAL+GITANQGFYLLGL+NTSPTFAS++QN
Sbjct: 59  ALLLLLPFAYFLEKKERPAITLNFLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQN 118

Query: 121 SVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAPPLNQI 180
           SVPAITFLMAA+ RIEKVR++R+DGI+K++GT  CVAGA+VITLYKGPTIY+PA  L+  
Sbjct: 119 SVPAITFLMAALLRIEKVRINRRDGISKILGTALCVAGASVITLYKGPTIYTPASHLHA- 177

Query: 181 QPDSLTSTIFLSLGDAKGKNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYTC 240
              +  S +   LG+A  KNWTLGC+YLIGHCLSWSGWLV QAPVLK YPARLSVT+YTC
Sbjct: 178 HLLTTNSAVLAPLGNAAPKNWTLGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTC 237

Query: 241 FFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVA 300
           FFG+IQF+IIAA  ER+  AW+FH+G E+F+ILYAG+VASGIAFAVQIWCIDRGGPVFVA
Sbjct: 238 FFGIIQFLIIAAFCERDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVA 297

Query: 301 VYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKFASKEKVMIQS 360
           VYQPVQTLVVAIMAS ALGEEFYLGGIIGAVLI+ GLY VL+GKSEE+KFA+ EK  IQS
Sbjct: 298 VYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFAALEKAAIQS 357

Query: 361 TQDHGNNSR--SASHIKTSLTQPLLPPSTENV 390
           + +HG      S + IK+S+T PLL  ST+NV
Sbjct: 358 SAEHGIERAPVSRNSIKSSITTPLLHQSTDNV 389
Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1 Back     alignment and function description
>sp|F4J9A3|WTR26_ARATH WAT1-related protein At3g53210 OS=Arabidopsis thaliana GN=At3g53210 PE=2 SV=1 Back     alignment and function description
>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1 Back     alignment and function description
>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1 Back     alignment and function description
>sp|Q9M0B8|WTR37_ARATH WAT1-related protein At4g30420 OS=Arabidopsis thaliana GN=At4g30420 PE=3 SV=1 Back     alignment and function description
>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1 Back     alignment and function description
>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
255538804384 Auxin-induced protein 5NG4, putative [Ri 0.982 0.997 0.838 0.0
317106672384 JHL18I08.9 [Jatropha curcas] 0.982 0.997 0.846 0.0
225458125383 PREDICTED: auxin-induced protein 5NG4-li 0.979 0.997 0.826 0.0
224085766384 mtn21-like protein [Populus trichocarpa] 0.982 0.997 0.818 0.0
118482147384 unknown [Populus trichocarpa] 0.982 0.997 0.815 0.0
356509972388 PREDICTED: auxin-induced protein 5NG4-li 0.994 1.0 0.820 1e-177
224062061384 predicted protein [Populus trichocarpa] 0.982 0.997 0.823 1e-177
356553415389 PREDICTED: auxin-induced protein 5NG4-li 0.987 0.989 0.796 1e-177
449469925396 PREDICTED: auxin-induced protein 5NG4-li 0.992 0.977 0.774 1e-175
356564327394 PREDICTED: auxin-induced protein 5NG4-li 0.987 0.977 0.771 1e-175
>gi|255538804|ref|XP_002510467.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223551168|gb|EEF52654.1| Auxin-induced protein 5NG4, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/391 (83%), Positives = 361/391 (92%), Gaps = 8/391 (2%)

Query: 1   MADTAGSVSTRRM-CSVPEKLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNI 59
           MADT GSVS+RRM CSVPE+LQLH+AM+ LQFGYAGFHVVSRAALNMGISKLVFPVYRNI
Sbjct: 1   MADTGGSVSSRRMWCSVPERLQLHMAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNI 60

Query: 60  IAFLLLLPFAYFLEKKERPAMTLNFALQFILLALVGITANQGFYLLGLENTSPTFASAIQ 119
           IA LLLLPFAYFLEKKERPA+TLNF +QF LLAL+GITANQGFYLLGL+NTSPTFASAIQ
Sbjct: 61  IALLLLLPFAYFLEKKERPAITLNFIIQFFLLALIGITANQGFYLLGLDNTSPTFASAIQ 120

Query: 120 NSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAPPLNQ 179
           NSVPAITFLMAA+ RIEKVRLDRKDGIAKV+GT+ CVAGA+VITLYKGP +YSP PPLN+
Sbjct: 121 NSVPAITFLMAALLRIEKVRLDRKDGIAKVIGTICCVAGASVITLYKGPVVYSPVPPLNK 180

Query: 180 IQPDSLTSTIFLSLGDAKGKNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYT 239
             P      +F+SLGDA+GKNWTLGC+YLIGHCLSWSGWLV+QAPVLKKYPARLSVT+YT
Sbjct: 181 PTP------MFVSLGDARGKNWTLGCIYLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYT 234

Query: 240 CFFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFV 299
           CFFGLIQF+IIAAIFER+  AW+FH+GGE+F+ILYAGVVASGIAFAVQIWCIDRGGPVFV
Sbjct: 235 CFFGLIQFLIIAAIFERDTQAWMFHSGGELFTILYAGVVASGIAFAVQIWCIDRGGPVFV 294

Query: 300 AVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKFASKEKVMIQ 359
           AVYQPVQTLVVAIMAS ALGEEFYLGG+IGAVLI++GLYLVLWGKSEEKKFA+KE   IQ
Sbjct: 295 AVYQPVQTLVVAIMASIALGEEFYLGGMIGAVLIIIGLYLVLWGKSEEKKFAAKESAAIQ 354

Query: 360 STQDHGNNSRSASHIKTSLTQPLLPPSTENV 390
           S+ DH  + RS +HIKTSLTQPLLP STENV
Sbjct: 355 SSADHA-SIRSQAHIKTSLTQPLLPSSTENV 384

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|317106672|dbj|BAJ53175.1| JHL18I08.9 [Jatropha curcas] Back     alignment and taxonomy information
>gi|225458125|ref|XP_002280062.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224085766|ref|XP_002307691.1| mtn21-like protein [Populus trichocarpa] gi|118482873|gb|ABK93351.1| unknown [Populus trichocarpa] gi|222857140|gb|EEE94687.1| mtn21-like protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118482147|gb|ABK93004.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509972|ref|XP_003523716.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max] Back     alignment and taxonomy information
>gi|224062061|ref|XP_002300735.1| predicted protein [Populus trichocarpa] gi|118484816|gb|ABK94275.1| unknown [Populus trichocarpa] gi|222842461|gb|EEE80008.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356553415|ref|XP_003545052.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max] Back     alignment and taxonomy information
>gi|449469925|ref|XP_004152669.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus] gi|449532196|ref|XP_004173068.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356564327|ref|XP_003550406.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
TAIR|locus:2005689389 WAT1 "Walls Are Thin 1" [Arabi 0.992 0.994 0.653 1.7e-130
UNIPROTKB|Q6J163410 Q6J163 "Auxin-induced protein 0.8 0.760 0.621 5.8e-105
TAIR|locus:2102028369 UMAMIT6 "Usually multiple acid 0.779 0.823 0.569 3.3e-95
TAIR|locus:2092702383 UMAMIT4 "AT3G18200" [Arabidops 0.764 0.778 0.545 3.7e-87
TAIR|locus:2077162385 UMAMIT3 "Usually multiple acid 0.776 0.787 0.395 3.4e-54
TAIR|locus:2118686373 UMAMIT34 "AT4G30420" [Arabidop 0.743 0.777 0.383 3.1e-51
TAIR|locus:2132447384 UMAMIT20 "Usually multiple aci 0.766 0.778 0.373 1.1e-50
TAIR|locus:2039792374 UMAMIT14 "AT2G39510" [Arabidop 0.748 0.780 0.378 2.8e-50
TAIR|locus:2169414402 UMAMIT9 "Usually multiple acid 0.769 0.746 0.357 3.6e-50
TAIR|locus:2012255374 UMAMIT25 "Usually multiple aci 0.748 0.780 0.374 9.5e-50
TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
 Identities = 256/392 (65%), Positives = 294/392 (75%)

Query:     1 MADTAGSVSTRRMCSVPEKLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNII 60
             MAD   +   R +  VPEKLQLH+AM+ LQFGYAGFHVVSRAALNMGISKLVFPVYRNII
Sbjct:     1 MADNTDN--RRSLWGVPEKLQLHIAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNII 58

Query:    61 XXXXXXXXXXXXEKKERPAMTLNFALQFILLALVGITANQGFYLLGLENTSPTFASAIQN 120
                         EKKERPA+TLNF +QF  LAL+GITANQGFYLLGL+NTSPTFAS++QN
Sbjct:    59 ALLLLLPFAYFLEKKERPAITLNFLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQN 118

Query:   121 SVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAPPLNQI 180
             SVPAITFLMAA+ RIEKVR++R+DGI+K++GT  CVAGA+VITLYKGPTIY+PA  L+  
Sbjct:   119 SVPAITFLMAALLRIEKVRINRRDGISKILGTALCVAGASVITLYKGPTIYTPASHLHA- 177

Query:   181 QPDSLTSTIFLSLGDAKGKNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYTC 240
                +  S +   LG+A  KNWTLGC+YLIGHCLSWSGWLV QAPVLK YPARLSVT+YTC
Sbjct:   178 HLLTTNSAVLAPLGNAAPKNWTLGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTC 237

Query:   241 FFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVA 300
             FFG+IQF+IIAA  ER+  AW+FH+G E+F+ILYAG+VASGIAFAVQIWCIDRGGPVFVA
Sbjct:   238 FFGIIQFLIIAAFCERDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVA 297

Query:   301 VYQPVQTLVVAIMASFALGEEFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMIQS 360
             VYQPVQTLVVAIMAS ALGEEFY                                  IQS
Sbjct:   298 VYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFAALEKAAIQS 357

Query:   361 TQDHGNNSRSASH--IKTSLTQPLLPPSTENV 390
             + +HG      S   IK+S+T PLL  ST+NV
Sbjct:   358 SAEHGIERAPVSRNSIKSSITTPLLHQSTDNV 389
GO:0016020 "membrane" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0009826 "unidimensional cell growth" evidence=IMP
GO:0009834 "secondary cell wall biogenesis" evidence=IMP
GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP
GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0007389 "pattern specification process" evidence=RCA
GO:0008361 "regulation of cell size" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009926 "auxin polar transport" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010015 "root morphogenesis" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0040007 "growth" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)] Back     alignment and assigned GO terms
TAIR|locus:2102028 UMAMIT6 "Usually multiple acids move in and out Transporters 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077162 UMAMIT3 "Usually multiple acids move in and out Transporters 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118686 UMAMIT34 "AT4G30420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6J1635NG4_PINTANo assigned EC number0.60950.95380.9073N/Ano
Q94AP3WAT1_ARATHNo assigned EC number0.74480.99230.9948yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
PLN00411358 PLN00411, PLN00411, nodulin MtN21 family protein; 5e-47
COG0697292 COG0697, RhaT, Permeases of the drug/metabolite tr 3e-11
pfam00892126 pfam00892, EamA, EamA-like transporter family 1e-09
pfam00892126 pfam00892, EamA, EamA-like transporter family 3e-07
TIGR00950260 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Tran 2e-04
>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional Back     alignment and domain information 
 Score =  163 bits (415), Expect = 5e-47
 Identities = 105/341 (30%), Positives = 182/341 (53%), Gaps = 21/341 (6%)

Query: 25  AMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLLPFAYFLEK-KERPAMTLN 83
           AM+A +    G   + + A + G++   F  Y  ++A LLLLP  +F  + +  P ++++
Sbjct: 17  AMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVS 76

Query: 84  FALQFILLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRIEKVRLDRK 143
              +  LL  +G       Y+ G+E ++PT ASAI N  PA+TF++A IFR+EKV    +
Sbjct: 77  ILSKIGLLGFLGSMYVITGYI-GIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKER 135

Query: 144 DGIAKVVGTLFCVAGATVITLYKGPTIY--SPAPPLNQIQ-PDSLTSTIFLSLGDAKGKN 200
             +AKV+GT+  + GA V+  Y GP ++  S  P LN  Q    L+S+           +
Sbjct: 136 SSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSS---------NSD 186

Query: 201 WTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVT-AYTCFFGLIQFMIIAAIFERNLD 259
           W +G   L    +  S   ++QA ++ +YPA  +V+  YT    ++  MI   + + N  
Sbjct: 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS 246

Query: 260 AWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALG 319
            WI H    + +I+   ++ S + + +  W +   GP+++A+++P+  L+  +M +  L 
Sbjct: 247 VWIIHFDITLITIVTMAIITS-VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLN 305

Query: 320 EEFYLGGIIGAVLIVVGLYLVLWGKSEEKK-----FASKEK 355
           +  YLG +IG +LI +G Y V+WGK+ E+K     F+ KEK
Sbjct: 306 DSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFSGKEK 346

Length = 358
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family Back     alignment and domain information
>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family Back     alignment and domain information
>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 390
PLN00411358 nodulin MtN21 family protein; Provisional 100.0
PRK11272292 putative DMT superfamily transporter inner membran 100.0
PRK11453299 O-acetylserine/cysteine export protein; Provisiona 100.0
PRK15430296 putative chloramphenical resistance permease RarD; 99.98
PRK11689295 aromatic amino acid exporter; Provisional 99.97
PRK10532293 threonine and homoserine efflux system; Provisiona 99.97
TIGR00950260 2A78 Carboxylate/Amino Acid/Amine Transporter. 99.97
TIGR00817302 tpt Tpt phosphate/phosphoenolpyruvate translocator 99.96
TIGR03340281 phn_DUF6 phosphonate utilization associated putati 99.96
PTZ00343350 triose or hexose phosphate/phosphate translocator; 99.95
PF06027334 DUF914: Eukaryotic protein of unknown function (DU 99.95
TIGR00688256 rarD rarD protein. This uncharacterized protein is 99.94
COG0697292 RhaT Permeases of the drug/metabolite transporter 99.92
COG2962293 RarD Predicted permeases [General function predict 99.92
COG5006292 rhtA Threonine/homoserine efflux transporter [Amin 99.91
KOG4510346 consensus Permease of the drug/metabolite transpor 99.89
TIGR00776290 RhaT RhaT L-rhamnose-proton symporter family prote 99.87
PF08449303 UAA: UAA transporter family; InterPro: IPR013657 T 99.82
KOG2765416 consensus Predicted membrane protein [Function unk 99.81
KOG2234345 consensus Predicted UDP-galactose transporter [Car 99.74
KOG1441316 consensus Glucose-6-phosphate/phosphate and phosph 99.72
COG2510140 Predicted membrane protein [Function unknown] 99.7
PF04142244 Nuc_sug_transp: Nucleotide-sugar transporter; Inte 99.67
COG2510140 Predicted membrane protein [Function unknown] 99.63
KOG1580337 consensus UDP-galactose transporter related protei 99.61
KOG2766336 consensus Predicted membrane protein [Function unk 99.58
KOG1443349 consensus Predicted integral membrane protein [Fun 99.57
KOG1444314 consensus Nucleotide-sugar transporter VRG4/SQV-7 99.57
PF00892126 EamA: EamA-like transporter family; InterPro: IPR0 99.44
PF00892126 EamA: EamA-like transporter family; InterPro: IPR0 99.44
KOG1442347 consensus GDP-fucose transporter [Carbohydrate tra 99.4
KOG3912372 consensus Predicted integral membrane protein [Gen 99.39
KOG1581327 consensus UDP-galactose transporter related protei 99.39
KOG1583330 consensus UDP-N-acetylglucosamine transporter [Car 99.33
PF06800269 Sugar_transport: Sugar transport protein; InterPro 99.31
COG5070309 VRG4 Nucleotide-sugar transporter [Carbohydrate tr 99.24
KOG1582367 consensus UDP-galactose transporter related protei 99.21
KOG4314290 consensus Predicted carbohydrate/phosphate translo 99.21
TIGR00950260 2A78 Carboxylate/Amino Acid/Amine Transporter. 99.2
PRK13499345 rhamnose-proton symporter; Provisional 99.15
PF03151153 TPT: Triose-phosphate Transporter family; InterPro 99.14
PRK15430 296 putative chloramphenical resistance permease RarD; 99.14
PF13536113 EmrE: Multidrug resistance efflux transporter 99.13
TIGR00688256 rarD rarD protein. This uncharacterized protein is 99.08
TIGR03340281 phn_DUF6 phosphonate utilization associated putati 99.02
PRK10532293 threonine and homoserine efflux system; Provisiona 99.02
PF05653300 Mg_trans_NIPA: Magnesium transporter NIPA; InterPr 99.01
PRK11272292 putative DMT superfamily transporter inner membran 99.01
PLN00411358 nodulin MtN21 family protein; Provisional 98.98
COG4975288 GlcU Putative glucose uptake permease [Carbohydrat 98.92
PRK02971129 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 98.89
TIGR00803222 nst UDP-galactose transporter. NSTs generally appe 98.85
PRK11689295 aromatic amino acid exporter; Provisional 98.83
PF13536113 EmrE: Multidrug resistance efflux transporter 98.83
PRK11453299 O-acetylserine/cysteine export protein; Provisiona 98.75
TIGR00817302 tpt Tpt phosphate/phosphoenolpyruvate translocator 98.7
KOG2922335 consensus Uncharacterized conserved protein [Funct 98.68
COG2962 293 RarD Predicted permeases [General function predict 98.65
PTZ00343 350 triose or hexose phosphate/phosphate translocator; 98.55
PF03151153 TPT: Triose-phosphate Transporter family; InterPro 98.54
PRK15051111 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 98.47
TIGR00776290 RhaT RhaT L-rhamnose-proton symporter family prote 98.39
COG0697292 RhaT Permeases of the drug/metabolite transporter 98.38
PRK15051111 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 98.33
PRK02971129 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 98.25
PF06027 334 DUF914: Eukaryotic protein of unknown function (DU 98.15
KOG4510 346 consensus Permease of the drug/metabolite transpor 98.13
COG5006292 rhtA Threonine/homoserine efflux transporter [Amin 98.06
PF08449 303 UAA: UAA transporter family; InterPro: IPR013657 T 98.05
PF04657138 DUF606: Protein of unknown function, DUF606; Inter 98.03
PF06800269 Sugar_transport: Sugar transport protein; InterPro 97.96
PRK10452120 multidrug efflux system protein MdtJ; Provisional 97.84
PF05653 300 Mg_trans_NIPA: Magnesium transporter NIPA; InterPr 97.81
PRK09541110 emrE multidrug efflux protein; Reviewed 97.72
PF06379344 RhaT: L-rhamnose-proton symport protein (RhaT); In 97.71
COG2076106 EmrE Membrane transporters of cations and cationic 97.55
PRK10650109 multidrug efflux system protein MdtI; Provisional 97.53
COG3238150 Uncharacterized protein conserved in bacteria [Fun 97.49
PRK11431105 multidrug efflux system protein; Provisional 97.46
PRK10452120 multidrug efflux system protein MdtJ; Provisional 97.32
PRK09541110 emrE multidrug efflux protein; Reviewed 97.3
PRK10650109 multidrug efflux system protein MdtI; Provisional 97.3
COG2076106 EmrE Membrane transporters of cations and cationic 97.27
PF04142 244 Nuc_sug_transp: Nucleotide-sugar transporter; Inte 97.2
PRK13499345 rhamnose-proton symporter; Provisional 97.19
PRK11431105 multidrug efflux system protein; Provisional 97.18
KOG1441316 consensus Glucose-6-phosphate/phosphate and phosph 97.12
PF10639113 UPF0546: Uncharacterised protein family UPF0546; I 97.11
PF07857254 DUF1632: CEO family (DUF1632); InterPro: IPR012435 97.09
PF04657138 DUF606: Protein of unknown function, DUF606; Inter 97.02
PF0089393 Multi_Drug_Res: Small Multidrug Resistance protein 97.0
PF07857254 DUF1632: CEO family (DUF1632); InterPro: IPR012435 96.99
KOG2765416 consensus Predicted membrane protein [Function unk 96.96
COG4975 288 GlcU Putative glucose uptake permease [Carbohydrat 96.64
PF10639113 UPF0546: Uncharacterised protein family UPF0546; I 96.64
KOG2234 345 consensus Predicted UDP-galactose transporter [Car 96.29
PF0089393 Multi_Drug_Res: Small Multidrug Resistance protein 96.22
KOG1444314 consensus Nucleotide-sugar transporter VRG4/SQV-7 95.76
COG3238150 Uncharacterized protein conserved in bacteria [Fun 95.47
PF06379 344 RhaT: L-rhamnose-proton symport protein (RhaT); In 94.87
KOG2922 335 consensus Uncharacterized conserved protein [Funct 94.62
KOG1581327 consensus UDP-galactose transporter related protei 94.4
KOG4314 290 consensus Predicted carbohydrate/phosphate translo 94.04
TIGR00803222 nst UDP-galactose transporter. NSTs generally appe 93.99
KOG1443 349 consensus Predicted integral membrane protein [Fun 93.81
COG5070309 VRG4 Nucleotide-sugar transporter [Carbohydrate tr 93.31
PF07168 336 Ureide_permease: Ureide permease; InterPro: IPR009 92.77
KOG1442347 consensus GDP-fucose transporter [Carbohydrate tra 92.06
KOG1580337 consensus UDP-galactose transporter related protei 91.52
PF07168336 Ureide_permease: Ureide permease; InterPro: IPR009 89.38
PF05297381 Herpes_LMP1: Herpesvirus latent membrane protein 1 88.14
KOG4831125 consensus Unnamed protein [Function unknown] 87.56
PRK02237109 hypothetical protein; Provisional 85.27
KOG3912 372 consensus Predicted integral membrane protein [Gen 84.9
PF02694107 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; 84.53
KOG2766 336 consensus Predicted membrane protein [Function unk 82.61
PF03547 385 Mem_trans: Membrane transport protein; InterPro: I 80.7
>PLN00411 nodulin MtN21 family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.7e-37  Score=294.80  Aligned_cols=320  Identities=29%  Similarity=0.578  Sum_probs=252.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhc-ccCCCCCHHHHHHHHHHHHHHHH
Q 016399           19 KLQLHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLLPFAYFLEK-KERPAMTLNFALQFILLALVGIT   97 (390)
Q Consensus        19 ~~~~~l~~ll~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~   97 (390)
                      +.+.++.|++..+.++...++.|.+.+.+++|..+.++|+.++.++++++.+++++ ++.++.+++++..+.+.|+++ .
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~   89 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-S   89 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-H
Confidence            56789999999999999999999999999999999999999999999998876544 333445678888999999998 6


Q ss_pred             HHHHHHHHhcccCCcccccccccchhHHHHHHHHHHhhccccccccCccccchhHHHHHhhhhHHhhhcCCcccCCC-CC
Q 016399           98 ANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPA-PP  176 (390)
Q Consensus        98 ~~~~~~~~al~~~~~~~~~il~~~~pi~~~ila~l~l~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~-~~  176 (390)
                      +++.+++.|++++++++++++.++.|+++.+++++++.|+++.|||.++.+++|++++++|+.++...++......+ +.
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~  169 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP  169 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence            78889999999999999999999999999999999987777777777779999999999999998754432210000 00


Q ss_pred             CCCCCCCCcccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhCCchhHHHHHHHHHHHHHHHHHHHHhcc
Q 016399          177 LNQIQPDSLTSTIFLSLGDAKGKNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYTCFFGLIQFMIIAAIFER  256 (390)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (390)
                      ..+.     .+..+....+  ..++..|++++++++++|++|.+++|+..+++++....++++..++.+...+.....+.
T Consensus       170 ~~~~-----~~~~~~~~~~--~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~  242 (358)
T PLN00411        170 YLNF-----RQLSPPLSSS--NSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK  242 (358)
T ss_pred             cccc-----cccccccCCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence            0000     0000000011  23456799999999999999999999998888755567777777777776666665443


Q ss_pred             c-ccchhccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeeehhhhHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Q 016399          257 N-LDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIVV  335 (390)
Q Consensus       257 ~-~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~iG~~li~~  335 (390)
                      . ...|..........+++.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|+.
T Consensus       243 ~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~  321 (358)
T PLN00411        243 NNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITL  321 (358)
T ss_pred             CCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence            2 222221122234457777775 67899999999999999999999999999999999999999999999999999999


Q ss_pred             HhhheeecCcch
Q 016399          336 GLYLVLWGKSEE  347 (390)
Q Consensus       336 gv~l~~~~~~~~  347 (390)
                      |+++..+.++++
T Consensus       322 Gv~l~~~~~~~~  333 (358)
T PLN00411        322 GFYAVMWGKANE  333 (358)
T ss_pred             HHHHHHhhhhhh
Confidence            999988755544

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional Back     alignment and domain information
>PRK11453 O-acetylserine/cysteine export protein; Provisional Back     alignment and domain information
>PRK15430 putative chloramphenical resistance permease RarD; Provisional Back     alignment and domain information
>PRK11689 aromatic amino acid exporter; Provisional Back     alignment and domain information
>PRK10532 threonine and homoserine efflux system; Provisional Back     alignment and domain information
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein Back     alignment and domain information
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function Back     alignment and domain information
>TIGR00688 rarD rarD protein Back     alignment and domain information
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG2962 RarD Predicted permeases [General function prediction only] Back     alignment and domain information
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only] Back     alignment and domain information
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein Back     alignment and domain information
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine [] Back     alignment and domain information
>KOG2765 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>COG2510 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles Back     alignment and domain information
>COG2510 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2766 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG1443 consensus Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown Back     alignment and domain information
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown Back     alignment and domain information
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3912 consensus Predicted integral membrane protein [General function prediction only] Back     alignment and domain information
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long Back     alignment and domain information
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only] Back     alignment and domain information
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information
>PRK13499 rhamnose-proton symporter; Provisional Back     alignment and domain information
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins Back     alignment and domain information
>PRK15430 putative chloramphenical resistance permease RarD; Provisional Back     alignment and domain information
>PF13536 EmrE: Multidrug resistance efflux transporter Back     alignment and domain information
>TIGR00688 rarD rarD protein Back     alignment and domain information
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein Back     alignment and domain information
>PRK10532 threonine and homoserine efflux system; Provisional Back     alignment and domain information
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional Back     alignment and domain information
>PLN00411 nodulin MtN21 family protein; Provisional Back     alignment and domain information
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional Back     alignment and domain information
>TIGR00803 nst UDP-galactose transporter Back     alignment and domain information
>PRK11689 aromatic amino acid exporter; Provisional Back     alignment and domain information
>PF13536 EmrE: Multidrug resistance efflux transporter Back     alignment and domain information
>PRK11453 O-acetylserine/cysteine export protein; Provisional Back     alignment and domain information
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information
>KOG2922 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG2962 RarD Predicted permeases [General function prediction only] Back     alignment and domain information
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins Back     alignment and domain information
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional Back     alignment and domain information
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein Back     alignment and domain information
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional Back     alignment and domain information
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional Back     alignment and domain information
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function Back     alignment and domain information
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only] Back     alignment and domain information
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine [] Back     alignment and domain information
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins Back     alignment and domain information
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long Back     alignment and domain information
>PRK10452 multidrug efflux system protein MdtJ; Provisional Back     alignment and domain information
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK09541 emrE multidrug efflux protein; Reviewed Back     alignment and domain information
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family Back     alignment and domain information
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10650 multidrug efflux system protein MdtI; Provisional Back     alignment and domain information
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK11431 multidrug efflux system protein; Provisional Back     alignment and domain information
>PRK10452 multidrug efflux system protein MdtJ; Provisional Back     alignment and domain information
>PRK09541 emrE multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10650 multidrug efflux system protein MdtI; Provisional Back     alignment and domain information
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles Back     alignment and domain information
>PRK13499 rhamnose-proton symporter; Provisional Back     alignment and domain information
>PRK11431 multidrug efflux system protein; Provisional Back     alignment and domain information
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function Back     alignment and domain information
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins Back     alignment and domain information
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins Back     alignment and domain information
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>KOG2765 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function Back     alignment and domain information
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins Back     alignment and domain information
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family Back     alignment and domain information
>KOG2922 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only] Back     alignment and domain information
>TIGR00803 nst UDP-galactose transporter Back     alignment and domain information
>KOG1443 consensus Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine Back     alignment and domain information
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine Back     alignment and domain information
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) Back     alignment and domain information
>KOG4831 consensus Unnamed protein [Function unknown] Back     alignment and domain information
>PRK02237 hypothetical protein; Provisional Back     alignment and domain information
>KOG3912 consensus Predicted integral membrane protein [General function prediction only] Back     alignment and domain information
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function Back     alignment and domain information
>KOG2766 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
2i68_A137 Protein EMRE; transmembrane protein, small-multidr 98.94
3b5d_A110 Multidrug transporter EMRE; helical membrane prote 98.7
3b5d_A110 Multidrug transporter EMRE; helical membrane prote 98.56
2i68_A137 Protein EMRE; transmembrane protein, small-multidr 98.56
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Back     alignment and structure
Probab=98.94  E-value=7.6e-10  Score=89.38  Aligned_cols=70  Identities=14%  Similarity=0.186  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCceeeeeh-hhhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhhheeecC
Q 016399          275 AGVVASGIAFAVQIWCIDRGGPVFVAVY-QPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWGK  344 (390)
Q Consensus       275 ~gi~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~iG~~li~~gv~l~~~~~  344 (390)
                      .++++++++|.++.+++++.+++.+..+ ..+.|+++++++++++||++++.+++|+++|++|+++....+
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5667799999999999999999999998 899999999999999999999999999999999999887543
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* Back     alignment and structure
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* Back     alignment and structure
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00