Citrus Sinensis ID: 016405


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
MGWRGILYVLFFLLTVVESSSRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIARHDEREKRLNFPQSVRDVVLGSGEIVR
cccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHEHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEEEHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcHHcccccccHHHcHHcccccccEEcccccccccccEccccEEEEEccccEEc
MGWRGILYVLFFLLTVVESSSRSFKiwlptvgaesdsvvaysWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLnsdaafncEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESqtiistssplleesytfgvvehpcplncilrdwrlgpefynAVKIGIVQYMILKMICALLAMILQTFgvygegkfewkygyPYLAVVLNFSQTWALYCLVQFYsvtkdklepikplakfltfksIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYvfparpykrgercvRNVAVMTdyaslgtppdpeevkdseRTTKMRIARHDErekrlnfpqsvrDVVLGSGEIVR
MGWRGILYVLFFLLTVVESSSRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMtdyaslgtppdpeevkdserTTKMRiarhderekrlnfpqsvrdvvlgsgeivr
MGWRGILYVLFFLLTVVESSSRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIARHDEREKRLNFPQSVRDVVLGSGEIVR
**WRGILYVLFFLLTVVESSSRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYA**************************************************
*GWRGILYVLFFLLTVVESSSRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSER***************************G******
MGWRGILYVLFFLLTVVESSSRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGT************TTKMRIARHDEREKRLNFPQSVRDVVLGSGEIVR
*GWRGILYVLFFLLTVVESSSRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIA***EREKRLNFPQSVRDVVLGSGEIVR
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGWRGILYVLFFLLTVVESSSRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIARHDEREKRLNFPQSVRDVVLGSGEIVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query390 2.2.26 [Sep-21-2011]
Q6GQE1444 Transmembrane protein 184 N/A no 0.789 0.693 0.326 4e-47
Q28CV2443 Transmembrane protein 184 yes no 0.789 0.695 0.323 1e-46
Q9NVA4438 Transmembrane protein 184 yes no 0.817 0.728 0.297 2e-44
Q5RET6438 Transmembrane protein 184 yes no 0.817 0.728 0.297 4e-44
Q5ZMP3445 Transmembrane protein 184 yes no 0.812 0.712 0.310 5e-44
Q17QL9438 Transmembrane protein 184 yes no 0.807 0.719 0.288 3e-43
Q54WM0351 Transmembrane protein 184 yes no 0.661 0.735 0.363 4e-43
Q810F5 503 Transmembrane protein 184 yes no 0.671 0.520 0.341 1e-42
Q3TPR7 525 Transmembrane protein 184 no no 0.841 0.624 0.309 2e-42
Q54PI4 493 Transmembrane protein 184 no no 0.692 0.547 0.342 1e-40
>sp|Q6GQE1|T184C_XENLA Transmembrane protein 184C OS=Xenopus laevis GN=tmem184c PE=2 SV=1 Back     alignment and function desciption
 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 182/337 (54%), Gaps = 29/337 (8%)

Query: 46  FTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFN 105
           F A +FVL+ + +S + I++HL  Y QPE QK +I ++ MVP+Y+++S+++L   D A  
Sbjct: 48  FIAGIFVLMTIPISLWGILQHLVHYTQPELQKPIIRILWMVPIYSVDSWIALKYPDIAIY 107

Query: 106 CEVIRDCYEAFALYCFERYLIACLGGEERTIEF-MESQTIISTSSPLLEESYTFGVVEHP 164
            +  R+CYEA+ +Y F  +L+  L      +   +E++       PL             
Sbjct: 108 VDTCRECYEAYVIYNFMIFLLNYLTNRCPNLALVLEAKDQQRHLPPL------------- 154

Query: 165 CPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPY 224
               C    W +G       K+G++QY +++ +  ++A+I Q  GVYGEG F  K  + Y
Sbjct: 155 ----CCCPPWAMGDVLLFRCKLGVLQYTVVRPVTTVIALICQLTGVYGEGDFSVKNAWTY 210

Query: 225 LAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIG 284
           L ++ N SQ +A+YCLV FY V K++L PI+P+ KFL  K +VF+++WQ + +A L   G
Sbjct: 211 LVIINNVSQVFAMYCLVLFYKVLKEELNPIQPVGKFLCVKMVVFVSFWQAVFIAILVKAG 270

Query: 285 AFRGSL----AQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGER---CVRNVAVMT 337
               +      Q++ T +QD+IIC+EM +AAV H Y F  +PY +      C  +   M 
Sbjct: 271 VISNTWEWKRVQDVATGLQDFIICVEMFLAAVAHHYSFTYKPYVQEAEEGSCFDSFLAMW 330

Query: 338 DYASLGTPPDPEEVKDSERTTKMRIAR---HDEREKR 371
           D + +      E+V++  RT   R  +   +D+ E+ 
Sbjct: 331 DISDIRADIS-EQVRNVGRTVLGRPRKMFFNDDPEQN 366




May play a role in cell growth.
Xenopus laevis (taxid: 8355)
>sp|Q28CV2|T184C_XENTR Transmembrane protein 184C OS=Xenopus tropicalis GN=tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q9NVA4|T184C_HUMAN Transmembrane protein 184C OS=Homo sapiens GN=TMEM184C PE=2 SV=2 Back     alignment and function description
>sp|Q5RET6|T184C_PONAB Transmembrane protein 184C OS=Pongo abelii GN=TMEM184C PE=2 SV=1 Back     alignment and function description
>sp|Q5ZMP3|T184C_CHICK Transmembrane protein 184C OS=Gallus gallus GN=TMEM184C PE=2 SV=1 Back     alignment and function description
>sp|Q17QL9|T184C_BOVIN Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1 Back     alignment and function description
>sp|Q54WM0|T1843_DICDI Transmembrane protein 184 homolog DDB_G0279555 OS=Dictyostelium discoideum GN=tmem184C PE=3 SV=1 Back     alignment and function description
>sp|Q810F5|T184C_RAT Transmembrane protein 184C OS=Rattus norvegicus GN=Tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q3TPR7|T184C_MOUSE Transmembrane protein 184C OS=Mus musculus GN=Tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q54PI4|T1841_DICDI Transmembrane protein 184 homolog DDB_G0284525 OS=Dictyostelium discoideum GN=tmem184A PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
224082402484 predicted protein [Populus trichocarpa] 0.992 0.799 0.820 0.0
255570390484 conserved hypothetical protein [Ricinus 0.992 0.799 0.822 0.0
224066743479 predicted protein [Populus trichocarpa] 0.992 0.807 0.812 0.0
449462168485 PREDICTED: transmembrane protein 184C-li 0.992 0.797 0.789 0.0
297839581484 hypothetical protein ARALYDRAFT_895607 [ 0.992 0.799 0.799 0.0
356518603485 PREDICTED: transmembrane protein 184C-li 0.992 0.797 0.794 0.0
225457753483 PREDICTED: transmembrane protein 184C [V 0.992 0.801 0.817 0.0
18411404484 uncharacterized protein [Arabidopsis tha 0.992 0.799 0.791 0.0
356546607484 PREDICTED: transmembrane protein 184C-li 0.992 0.799 0.759 1e-172
3540198 500 Unknown protein [Arabidopsis thaliana] 0.964 0.752 0.713 1e-170
>gi|224082402|ref|XP_002306680.1| predicted protein [Populus trichocarpa] gi|222856129|gb|EEE93676.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/389 (82%), Positives = 354/389 (91%), Gaps = 2/389 (0%)

Query: 1   MGWRGILYVLFFLLTVVESSSRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILST 60
           M WRG    LFFL  +V+S+S+S K+W   +GAES  VV  SWP+F+A +FVL+ALILS 
Sbjct: 1   MEWRGTFCCLFFLFELVKSTSQSGKVWALYLGAES--VVNVSWPIFSAGIFVLLALILSM 58

Query: 61  YLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYC 120
           YLI EHLAAYNQPEEQKFLIGLILMVPVY+LESFLSLL+S AAFNCE IRDCYEAFALYC
Sbjct: 59  YLIFEHLAAYNQPEEQKFLIGLILMVPVYSLESFLSLLDSSAAFNCEAIRDCYEAFALYC 118

Query: 121 FERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEF 180
           FERYLIACLGGEE TI+FMESQT+I++SSPLLEESY +GVVEHP PLNC LRDW LG +F
Sbjct: 119 FERYLIACLGGEENTIQFMESQTLITSSSPLLEESYAYGVVEHPFPLNCFLRDWNLGADF 178

Query: 181 YNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCL 240
           Y+AVKIG+VQYMILK+ICALLAMILQ FGVYGEGKFEW+YGYPYLAV+LNFSQTWALYCL
Sbjct: 179 YHAVKIGVVQYMILKLICALLAMILQAFGVYGEGKFEWRYGYPYLAVILNFSQTWALYCL 238

Query: 241 VQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQD 300
           VQFYSV KDKL PIKPLAKFLTFKSIVFLTWWQG++VAFL S+GAF+G+LAQELKTRIQD
Sbjct: 239 VQFYSVIKDKLAPIKPLAKFLTFKSIVFLTWWQGVVVAFLNSMGAFKGTLAQELKTRIQD 298

Query: 301 YIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKM 360
           YIICIEMGIAA+VHLYVFPA PYKRGERCVRNVAVMTDYASLGTPPD +EV+D ER+T++
Sbjct: 299 YIICIEMGIAAIVHLYVFPAVPYKRGERCVRNVAVMTDYASLGTPPDSKEVQDCERSTRV 358

Query: 361 RIARHDEREKRLNFPQSVRDVVLGSGEIV 389
           R  RHDEREKRLNFPQSVRDVVLGSGEI+
Sbjct: 359 RQGRHDEREKRLNFPQSVRDVVLGSGEII 387




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570390|ref|XP_002526154.1| conserved hypothetical protein [Ricinus communis] gi|223534531|gb|EEF36230.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224066743|ref|XP_002302193.1| predicted protein [Populus trichocarpa] gi|222843919|gb|EEE81466.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449462168|ref|XP_004148813.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] gi|449518376|ref|XP_004166218.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297839581|ref|XP_002887672.1| hypothetical protein ARALYDRAFT_895607 [Arabidopsis lyrata subsp. lyrata] gi|297333513|gb|EFH63931.1| hypothetical protein ARALYDRAFT_895607 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356518603|ref|XP_003527968.1| PREDICTED: transmembrane protein 184C-like [Glycine max] Back     alignment and taxonomy information
>gi|225457753|ref|XP_002278084.1| PREDICTED: transmembrane protein 184C [Vitis vinifera] gi|302142772|emb|CBI19975.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|18411404|ref|NP_565152.1| uncharacterized protein [Arabidopsis thaliana] gi|14334724|gb|AAK59540.1| unknown protein [Arabidopsis thaliana] gi|21280885|gb|AAM44904.1| unknown protein [Arabidopsis thaliana] gi|332197830|gb|AEE35951.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356546607|ref|XP_003541716.1| PREDICTED: transmembrane protein 184C-like [Glycine max] Back     alignment and taxonomy information
>gi|3540198|gb|AAC34348.1| Unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
TAIR|locus:2196005484 AT1G77220 "AT1G77220" [Arabido 0.992 0.799 0.791 1.7e-169
TAIR|locus:2121763 485 LAZ1 "AT4G38360" [Arabidopsis 0.897 0.721 0.581 1.4e-112
TAIR|locus:2201235403 AT1G23070 "AT1G23070" [Arabido 0.679 0.657 0.509 2.5e-72
DICTYBASE|DDB_G0279555351 tmem184C "transmembrane protei 0.443 0.492 0.361 6e-46
UNIPROTKB|Q9NVA4438 TMEM184C "Transmembrane protei 0.761 0.678 0.318 7.1e-45
UNIPROTKB|Q5ZMP3445 TMEM184C "Transmembrane protei 0.820 0.719 0.315 9.1e-45
UNIPROTKB|A5D9H3470 TMEM34 "Transmembrane protein 0.756 0.627 0.317 3.1e-44
UNIPROTKB|Q17QL9438 TMEM184C "Transmembrane protei 0.756 0.673 0.317 3.1e-44
RGD|727852 503 Tmem184c "transmembrane protei 0.761 0.590 0.325 3.5e-43
MGI|MGI:2384562 525 Tmem184c "transmembrane protei 0.761 0.565 0.325 4.5e-43
TAIR|locus:2196005 AT1G77220 "AT1G77220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1648 (585.2 bits), Expect = 1.7e-169, P = 1.7e-169
 Identities = 308/389 (79%), Positives = 348/389 (89%)

Query:     1 MGWRGILYVLFFLLTVVESSSRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILST 60
             M WRGIL  L F+++V ESSSR   +W P +G +S   +  +WP+ +AS+FV++A++L  
Sbjct:     1 MEWRGILCSLLFIVSVGESSSRFGIMWHPNLGVDSGQYL--TWPILSASVFVVIAILLPM 58

Query:    61 YLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYC 120
             YLI EHLA+YNQPEEQKFLIGLILMVPVYA+ESFLSL+NS+AAFNCEVIRDCYEAFALYC
Sbjct:    59 YLIFEHLASYNQPEEQKFLIGLILMVPVYAVESFLSLVNSEAAFNCEVIRDCYEAFALYC 118

Query:   121 FERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEF 180
             FERYLIACL GEERTIEFME QT+I+ S+PLLE + ++GVVEHP P+NC ++DW LGP+F
Sbjct:   119 FERYLIACLDGEERTIEFMEQQTVITQSTPLLEGTCSYGVVEHPFPMNCFVKDWSLGPQF 178

Query:   181 YNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCL 240
             Y+AVKIGIVQYMILKMICALLAMIL+ FGVYGEGKF W YGYPYLAVVLNFSQTWALYCL
Sbjct:   179 YHAVKIGIVQYMILKMICALLAMILEAFGVYGEGKFAWNYGYPYLAVVLNFSQTWALYCL 238

Query:   241 VQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQD 300
             VQFY+V KDKL PIKPLAKFLTFKSIVFLTWWQGIIVAFLFS+G  +GSLA+ELKTRIQD
Sbjct:   239 VQFYNVIKDKLAPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSMGLVKGSLAKELKTRIQD 298

Query:   301 YIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKM 360
             YIICIEMGIAAVVHLYVFPA PYKRGERCVRNVAVM+DYAS+  PPDPEEVKDSERTT+ 
Sbjct:   299 YIICIEMGIAAVVHLYVFPAAPYKRGERCVRNVAVMSDYASIDVPPDPEEVKDSERTTRT 358

Query:   361 RIARHDEREKRLNFPQSVRDVVLGSGEIV 389
             R  RHD+REKRLNFPQSVRDVVLGSGEI+
Sbjct:   359 RYGRHDDREKRLNFPQSVRDVVLGSGEII 387




GO:0008150 "biological_process" evidence=ND
TAIR|locus:2121763 LAZ1 "AT4G38360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201235 AT1G23070 "AT1G23070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279555 tmem184C "transmembrane protein 184C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NVA4 TMEM184C "Transmembrane protein 184C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMP3 TMEM184C "Transmembrane protein 184C" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A5D9H3 TMEM34 "Transmembrane protein 34" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QL9 TMEM184C "Transmembrane protein 184C" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|727852 Tmem184c "transmembrane protein 184C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2384562 Tmem184c "transmembrane protein 184C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
pfam03619272 pfam03619, Solute_trans_a, Organic solute transpor 1e-125
>gnl|CDD|217643 pfam03619, Solute_trans_a, Organic solute transporter Ostalpha Back     alignment and domain information
 Score =  361 bits (930), Expect = e-125
 Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 17/284 (5%)

Query: 43  WPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDA 102
           W +  A LFVL+AL++S +LI++HL  Y +PEEQ+ +I ++LMVP+YA+ SFLSLL   A
Sbjct: 3   WAILIAGLFVLLALLISLFLILQHLTNYTKPEEQRLIIRILLMVPIYAVISFLSLLFPKA 62

Query: 103 AFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVE 162
           A   ++IRDCYEAF +Y F   LIA LGGE   I  +E +  I    PLL          
Sbjct: 63  AIYFDLIRDCYEAFVIYTFFSLLIAYLGGERNIIRLLEGKPPIRHPFPLLT--------- 113

Query: 163 HPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGY 222
                 C+LR  R  P F+   K G++QY+++K +CA+LA+ILQ FGVYGEG F    GY
Sbjct: 114 -----KCLLRTDRSDPTFFLRCKRGVLQYVVVKPLCAILAIILQAFGVYGEGSFSPDSGY 168

Query: 223 PYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFS 282
            YL ++ N S + ALYCLV FY   KD+L P KPL KFL  K I+F ++WQG++++ L S
Sbjct: 169 LYLTIIYNISVSLALYCLVLFYKALKDELAPFKPLLKFLCIKLIIFFSFWQGVLISILVS 228

Query: 283 IGAFRGSLAQ---ELKTRIQDYIICIEMGIAAVVHLYVFPARPY 323
           +G  + + A    EL   IQ+++ICIEM I A+ HLY FP +PY
Sbjct: 229 LGLIKPTEAWEEPELSAGIQNFLICIEMFIFAIAHLYAFPYKPY 272


This family is a transmembrane organic solute transport protein. In vertebrates these proteins form a complex with Ostbeta, and function as bile transporters. In plants they may transport brassinosteroid-like compounds and act as regulators of cell death. Length = 272

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 390
PF03619274 Solute_trans_a: Organic solute transporter Ostalph 100.0
KOG2641386 consensus Predicted seven transmembrane receptor - 100.0
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function Back     alignment and domain information
Probab=100.00  E-value=1.3e-79  Score=595.92  Aligned_cols=267  Identities=42%  Similarity=0.835  Sum_probs=255.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHhhhhhhhhHHHHHHHHHhhccchhhHhHHHHHHHHHHHH
Q 016405           39 VAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFAL  118 (390)
Q Consensus        39 ~~~~~a~~iag~f~lla~~iS~~~I~~Hl~~Yt~P~~Qr~IIRIL~mvPIYai~S~lsL~~p~~aiy~~~iRd~YEAfvi  118 (390)
                      |+  |++++||+|+++|+++|+++|++|++||++|++||+|+||++|+|+||++||+|+++||+++|+|++||||||+++
T Consensus         1 ~~--~~~~ia~~~~~~~~~is~~~i~~hl~~y~~P~~Qr~iirIl~m~Piyai~S~~sl~~p~~~~~~~~ir~~Yea~~l   78 (274)
T PF03619_consen    1 HT--WAWIIAGIFALLTILISLFLIYQHLRNYSKPEEQRYIIRILLMVPIYAICSLLSLLFPRAAIYLDFIRDCYEAFVL   78 (274)
T ss_pred             Cc--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            56  9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChhHHHHHHhhhccccCCCchhhhhccCCccccCccc---ccccccccCChhHHHHHHHhhhhhhHHH
Q 016405          119 YCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPL---NCILRDWRLGPEFYNAVKIGIVQYMILK  195 (390)
Q Consensus       119 Y~F~~lli~ylGGe~~~i~~l~~~~~~~~~~p~l~~~~~~~~~~h~~P~---~cc~~~~~~~~~fl~~~K~gVlQy~ivk  195 (390)
                      |+|++|+++|+|||++.++.+++                +++++|++|+   +||+|++++|++++++||+||+||+++|
T Consensus        79 y~F~~Ll~~y~gg~~~~~~~l~~----------------~~~~~~~~P~~~~~~c~~~~~~~~~~l~~~k~~VlQ~~vvr  142 (274)
T PF03619_consen   79 YSFFSLLLNYLGGEEALVEVLSG----------------KPPIKHPWPCCCCCCCLPPWPMTKRFLRRCKWGVLQYVVVR  142 (274)
T ss_pred             HHHHHHHHHHhCCHHHHHHHhhc----------------CCCCCCCCcccccccCCCccccchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888753                3345688998   4566899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHH
Q 016405          196 MICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGI  275 (390)
Q Consensus       196 Pl~ai~aiIl~~~G~Y~~g~~~~~~~ylyi~ii~niS~~lALY~L~~Fy~~~k~~L~p~~P~~KFl~iK~VVFltfwQ~~  275 (390)
                      |++++++++++++|.||||+++++.+|+|+++++|+|+++|||||.+||+++|++|+|+||++||+|+|+|||++|||++
T Consensus       143 pl~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~~~~L~~~~p~~KF~~iK~vvfl~f~Q~~  222 (274)
T PF03619_consen  143 PLLSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLVIFYRATKEELKPYRPLLKFLCIKLVVFLSFWQGF  222 (274)
T ss_pred             HHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCc---H-HHHHHHhhhhHHHHHHHHHHHHHhhccCCCcc
Q 016405          276 IVAFLFSIGAFRGSL---A-QELKTRIQDYIICIEMGIAAVVHLYVFPARPY  323 (390)
Q Consensus       276 ii~iL~~~Gvi~~~~---~-~~~~~~iq~~LICiEM~i~Ai~h~~aF~~~~Y  323 (390)
                      ++++|.+.|++++..   + +++++++||+|+|+||+++|++|++|||++||
T Consensus       223 ii~iL~~~g~i~~~~~~~~~~~~~~~i~~~LicvEM~i~ai~~~~af~~~~y  274 (274)
T PF03619_consen  223 IISILASFGVIPCTPPWSSPEDIASGIQNFLICVEMFIFAILHRYAFPYSPY  274 (274)
T ss_pred             HHHHHHHCCCcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            999999999998752   2 48999999999999999999999999999998



>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00