Citrus Sinensis ID: 016405
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 390 | ||||||
| 224082402 | 484 | predicted protein [Populus trichocarpa] | 0.992 | 0.799 | 0.820 | 0.0 | |
| 255570390 | 484 | conserved hypothetical protein [Ricinus | 0.992 | 0.799 | 0.822 | 0.0 | |
| 224066743 | 479 | predicted protein [Populus trichocarpa] | 0.992 | 0.807 | 0.812 | 0.0 | |
| 449462168 | 485 | PREDICTED: transmembrane protein 184C-li | 0.992 | 0.797 | 0.789 | 0.0 | |
| 297839581 | 484 | hypothetical protein ARALYDRAFT_895607 [ | 0.992 | 0.799 | 0.799 | 0.0 | |
| 356518603 | 485 | PREDICTED: transmembrane protein 184C-li | 0.992 | 0.797 | 0.794 | 0.0 | |
| 225457753 | 483 | PREDICTED: transmembrane protein 184C [V | 0.992 | 0.801 | 0.817 | 0.0 | |
| 18411404 | 484 | uncharacterized protein [Arabidopsis tha | 0.992 | 0.799 | 0.791 | 0.0 | |
| 356546607 | 484 | PREDICTED: transmembrane protein 184C-li | 0.992 | 0.799 | 0.759 | 1e-172 | |
| 3540198 | 500 | Unknown protein [Arabidopsis thaliana] | 0.964 | 0.752 | 0.713 | 1e-170 |
| >gi|224082402|ref|XP_002306680.1| predicted protein [Populus trichocarpa] gi|222856129|gb|EEE93676.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/389 (82%), Positives = 354/389 (91%), Gaps = 2/389 (0%)
Query: 1 MGWRGILYVLFFLLTVVESSSRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILST 60
M WRG LFFL +V+S+S+S K+W +GAES VV SWP+F+A +FVL+ALILS
Sbjct: 1 MEWRGTFCCLFFLFELVKSTSQSGKVWALYLGAES--VVNVSWPIFSAGIFVLLALILSM 58
Query: 61 YLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYC 120
YLI EHLAAYNQPEEQKFLIGLILMVPVY+LESFLSLL+S AAFNCE IRDCYEAFALYC
Sbjct: 59 YLIFEHLAAYNQPEEQKFLIGLILMVPVYSLESFLSLLDSSAAFNCEAIRDCYEAFALYC 118
Query: 121 FERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEF 180
FERYLIACLGGEE TI+FMESQT+I++SSPLLEESY +GVVEHP PLNC LRDW LG +F
Sbjct: 119 FERYLIACLGGEENTIQFMESQTLITSSSPLLEESYAYGVVEHPFPLNCFLRDWNLGADF 178
Query: 181 YNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCL 240
Y+AVKIG+VQYMILK+ICALLAMILQ FGVYGEGKFEW+YGYPYLAV+LNFSQTWALYCL
Sbjct: 179 YHAVKIGVVQYMILKLICALLAMILQAFGVYGEGKFEWRYGYPYLAVILNFSQTWALYCL 238
Query: 241 VQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQD 300
VQFYSV KDKL PIKPLAKFLTFKSIVFLTWWQG++VAFL S+GAF+G+LAQELKTRIQD
Sbjct: 239 VQFYSVIKDKLAPIKPLAKFLTFKSIVFLTWWQGVVVAFLNSMGAFKGTLAQELKTRIQD 298
Query: 301 YIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKM 360
YIICIEMGIAA+VHLYVFPA PYKRGERCVRNVAVMTDYASLGTPPD +EV+D ER+T++
Sbjct: 299 YIICIEMGIAAIVHLYVFPAVPYKRGERCVRNVAVMTDYASLGTPPDSKEVQDCERSTRV 358
Query: 361 RIARHDEREKRLNFPQSVRDVVLGSGEIV 389
R RHDEREKRLNFPQSVRDVVLGSGEI+
Sbjct: 359 RQGRHDEREKRLNFPQSVRDVVLGSGEII 387
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255570390|ref|XP_002526154.1| conserved hypothetical protein [Ricinus communis] gi|223534531|gb|EEF36230.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224066743|ref|XP_002302193.1| predicted protein [Populus trichocarpa] gi|222843919|gb|EEE81466.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449462168|ref|XP_004148813.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] gi|449518376|ref|XP_004166218.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297839581|ref|XP_002887672.1| hypothetical protein ARALYDRAFT_895607 [Arabidopsis lyrata subsp. lyrata] gi|297333513|gb|EFH63931.1| hypothetical protein ARALYDRAFT_895607 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356518603|ref|XP_003527968.1| PREDICTED: transmembrane protein 184C-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225457753|ref|XP_002278084.1| PREDICTED: transmembrane protein 184C [Vitis vinifera] gi|302142772|emb|CBI19975.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|18411404|ref|NP_565152.1| uncharacterized protein [Arabidopsis thaliana] gi|14334724|gb|AAK59540.1| unknown protein [Arabidopsis thaliana] gi|21280885|gb|AAM44904.1| unknown protein [Arabidopsis thaliana] gi|332197830|gb|AEE35951.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356546607|ref|XP_003541716.1| PREDICTED: transmembrane protein 184C-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|3540198|gb|AAC34348.1| Unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 390 | ||||||
| TAIR|locus:2196005 | 484 | AT1G77220 "AT1G77220" [Arabido | 0.992 | 0.799 | 0.791 | 1.7e-169 | |
| TAIR|locus:2121763 | 485 | LAZ1 "AT4G38360" [Arabidopsis | 0.897 | 0.721 | 0.581 | 1.4e-112 | |
| TAIR|locus:2201235 | 403 | AT1G23070 "AT1G23070" [Arabido | 0.679 | 0.657 | 0.509 | 2.5e-72 | |
| DICTYBASE|DDB_G0279555 | 351 | tmem184C "transmembrane protei | 0.443 | 0.492 | 0.361 | 6e-46 | |
| UNIPROTKB|Q9NVA4 | 438 | TMEM184C "Transmembrane protei | 0.761 | 0.678 | 0.318 | 7.1e-45 | |
| UNIPROTKB|Q5ZMP3 | 445 | TMEM184C "Transmembrane protei | 0.820 | 0.719 | 0.315 | 9.1e-45 | |
| UNIPROTKB|A5D9H3 | 470 | TMEM34 "Transmembrane protein | 0.756 | 0.627 | 0.317 | 3.1e-44 | |
| UNIPROTKB|Q17QL9 | 438 | TMEM184C "Transmembrane protei | 0.756 | 0.673 | 0.317 | 3.1e-44 | |
| RGD|727852 | 503 | Tmem184c "transmembrane protei | 0.761 | 0.590 | 0.325 | 3.5e-43 | |
| MGI|MGI:2384562 | 525 | Tmem184c "transmembrane protei | 0.761 | 0.565 | 0.325 | 4.5e-43 |
| TAIR|locus:2196005 AT1G77220 "AT1G77220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1648 (585.2 bits), Expect = 1.7e-169, P = 1.7e-169
Identities = 308/389 (79%), Positives = 348/389 (89%)
Query: 1 MGWRGILYVLFFLLTVVESSSRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILST 60
M WRGIL L F+++V ESSSR +W P +G +S + +WP+ +AS+FV++A++L
Sbjct: 1 MEWRGILCSLLFIVSVGESSSRFGIMWHPNLGVDSGQYL--TWPILSASVFVVIAILLPM 58
Query: 61 YLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYC 120
YLI EHLA+YNQPEEQKFLIGLILMVPVYA+ESFLSL+NS+AAFNCEVIRDCYEAFALYC
Sbjct: 59 YLIFEHLASYNQPEEQKFLIGLILMVPVYAVESFLSLVNSEAAFNCEVIRDCYEAFALYC 118
Query: 121 FERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEF 180
FERYLIACL GEERTIEFME QT+I+ S+PLLE + ++GVVEHP P+NC ++DW LGP+F
Sbjct: 119 FERYLIACLDGEERTIEFMEQQTVITQSTPLLEGTCSYGVVEHPFPMNCFVKDWSLGPQF 178
Query: 181 YNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCL 240
Y+AVKIGIVQYMILKMICALLAMIL+ FGVYGEGKF W YGYPYLAVVLNFSQTWALYCL
Sbjct: 179 YHAVKIGIVQYMILKMICALLAMILEAFGVYGEGKFAWNYGYPYLAVVLNFSQTWALYCL 238
Query: 241 VQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQD 300
VQFY+V KDKL PIKPLAKFLTFKSIVFLTWWQGIIVAFLFS+G +GSLA+ELKTRIQD
Sbjct: 239 VQFYNVIKDKLAPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSMGLVKGSLAKELKTRIQD 298
Query: 301 YIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKM 360
YIICIEMGIAAVVHLYVFPA PYKRGERCVRNVAVM+DYAS+ PPDPEEVKDSERTT+
Sbjct: 299 YIICIEMGIAAVVHLYVFPAAPYKRGERCVRNVAVMSDYASIDVPPDPEEVKDSERTTRT 358
Query: 361 RIARHDEREKRLNFPQSVRDVVLGSGEIV 389
R RHD+REKRLNFPQSVRDVVLGSGEI+
Sbjct: 359 RYGRHDDREKRLNFPQSVRDVVLGSGEII 387
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| TAIR|locus:2121763 LAZ1 "AT4G38360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2201235 AT1G23070 "AT1G23070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0279555 tmem184C "transmembrane protein 184C" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9NVA4 TMEM184C "Transmembrane protein 184C" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5ZMP3 TMEM184C "Transmembrane protein 184C" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A5D9H3 TMEM34 "Transmembrane protein 34" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q17QL9 TMEM184C "Transmembrane protein 184C" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| RGD|727852 Tmem184c "transmembrane protein 184C" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:2384562 Tmem184c "transmembrane protein 184C" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 390 | |||
| pfam03619 | 272 | pfam03619, Solute_trans_a, Organic solute transpor | 1e-125 |
| >gnl|CDD|217643 pfam03619, Solute_trans_a, Organic solute transporter Ostalpha | Back alignment and domain information |
|---|
Score = 361 bits (930), Expect = e-125
Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 17/284 (5%)
Query: 43 WPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDA 102
W + A LFVL+AL++S +LI++HL Y +PEEQ+ +I ++LMVP+YA+ SFLSLL A
Sbjct: 3 WAILIAGLFVLLALLISLFLILQHLTNYTKPEEQRLIIRILLMVPIYAVISFLSLLFPKA 62
Query: 103 AFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVE 162
A ++IRDCYEAF +Y F LIA LGGE I +E + I PLL
Sbjct: 63 AIYFDLIRDCYEAFVIYTFFSLLIAYLGGERNIIRLLEGKPPIRHPFPLLT--------- 113
Query: 163 HPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGY 222
C+LR R P F+ K G++QY+++K +CA+LA+ILQ FGVYGEG F GY
Sbjct: 114 -----KCLLRTDRSDPTFFLRCKRGVLQYVVVKPLCAILAIILQAFGVYGEGSFSPDSGY 168
Query: 223 PYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFS 282
YL ++ N S + ALYCLV FY KD+L P KPL KFL K I+F ++WQG++++ L S
Sbjct: 169 LYLTIIYNISVSLALYCLVLFYKALKDELAPFKPLLKFLCIKLIIFFSFWQGVLISILVS 228
Query: 283 IGAFRGSLAQ---ELKTRIQDYIICIEMGIAAVVHLYVFPARPY 323
+G + + A EL IQ+++ICIEM I A+ HLY FP +PY
Sbjct: 229 LGLIKPTEAWEEPELSAGIQNFLICIEMFIFAIAHLYAFPYKPY 272
|
This family is a transmembrane organic solute transport protein. In vertebrates these proteins form a complex with Ostbeta, and function as bile transporters. In plants they may transport brassinosteroid-like compounds and act as regulators of cell death. Length = 272 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 390 | |||
| PF03619 | 274 | Solute_trans_a: Organic solute transporter Ostalph | 100.0 | |
| KOG2641 | 386 | consensus Predicted seven transmembrane receptor - | 100.0 |
| >PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-79 Score=595.92 Aligned_cols=267 Identities=42% Similarity=0.835 Sum_probs=255.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHhhhhhhhhHHHHHHHHHhhccchhhHhHHHHHHHHHHHH
Q 016405 39 VAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFAL 118 (390)
Q Consensus 39 ~~~~~a~~iag~f~lla~~iS~~~I~~Hl~~Yt~P~~Qr~IIRIL~mvPIYai~S~lsL~~p~~aiy~~~iRd~YEAfvi 118 (390)
|+ |++++||+|+++|+++|+++|++|++||++|++||+|+||++|+|+||++||+|+++||+++|+|++||||||+++
T Consensus 1 ~~--~~~~ia~~~~~~~~~is~~~i~~hl~~y~~P~~Qr~iirIl~m~Piyai~S~~sl~~p~~~~~~~~ir~~Yea~~l 78 (274)
T PF03619_consen 1 HT--WAWIIAGIFALLTILISLFLIYQHLRNYSKPEEQRYIIRILLMVPIYAICSLLSLLFPRAAIYLDFIRDCYEAFVL 78 (274)
T ss_pred Cc--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhhccccCCCchhhhhccCCccccCccc---ccccccccCChhHHHHHHHhhhhhhHHH
Q 016405 119 YCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPL---NCILRDWRLGPEFYNAVKIGIVQYMILK 195 (390)
Q Consensus 119 Y~F~~lli~ylGGe~~~i~~l~~~~~~~~~~p~l~~~~~~~~~~h~~P~---~cc~~~~~~~~~fl~~~K~gVlQy~ivk 195 (390)
|+|++|+++|+|||++.++.+++ +++++|++|+ +||+|++++|++++++||+||+||+++|
T Consensus 79 y~F~~Ll~~y~gg~~~~~~~l~~----------------~~~~~~~~P~~~~~~c~~~~~~~~~~l~~~k~~VlQ~~vvr 142 (274)
T PF03619_consen 79 YSFFSLLLNYLGGEEALVEVLSG----------------KPPIKHPWPCCCCCCCLPPWPMTKRFLRRCKWGVLQYVVVR 142 (274)
T ss_pred HHHHHHHHHHhCCHHHHHHHhhc----------------CCCCCCCCcccccccCCCccccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888753 3345688998 4566899999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHH
Q 016405 196 MICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGI 275 (390)
Q Consensus 196 Pl~ai~aiIl~~~G~Y~~g~~~~~~~ylyi~ii~niS~~lALY~L~~Fy~~~k~~L~p~~P~~KFl~iK~VVFltfwQ~~ 275 (390)
|++++++++++++|.||||+++++.+|+|+++++|+|+++|||||.+||+++|++|+|+||++||+|+|+|||++|||++
T Consensus 143 pl~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~~~~L~~~~p~~KF~~iK~vvfl~f~Q~~ 222 (274)
T PF03619_consen 143 PLLSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLVIFYRATKEELKPYRPLLKFLCIKLVVFLSFWQGF 222 (274)
T ss_pred HHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCc---H-HHHHHHhhhhHHHHHHHHHHHHHhhccCCCcc
Q 016405 276 IVAFLFSIGAFRGSL---A-QELKTRIQDYIICIEMGIAAVVHLYVFPARPY 323 (390)
Q Consensus 276 ii~iL~~~Gvi~~~~---~-~~~~~~iq~~LICiEM~i~Ai~h~~aF~~~~Y 323 (390)
++++|.+.|++++.. + +++++++||+|+|+||+++|++|++|||++||
T Consensus 223 ii~iL~~~g~i~~~~~~~~~~~~~~~i~~~LicvEM~i~ai~~~~af~~~~y 274 (274)
T PF03619_consen 223 IISILASFGVIPCTPPWSSPEDIASGIQNFLICVEMFIFAILHRYAFPYSPY 274 (274)
T ss_pred HHHHHHHCCCcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999998752 2 48999999999999999999999999999998
|
|
| >KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00