Citrus Sinensis ID: 016412

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
Protein Sequence
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEccEEEEEEcccccccccccEEEEcccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEcccEEEEEEcccccccHHHHEEEEccccccccccccEcccccEEEcccccccEccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHccHHHccHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msacsstfrlpnlpnispqnhnivmPTTVFLSLrhstatnpalcklqcvgnnfdstpktieipgkiteesadceprihssggdggagdspggggggggdsgggggdgegndgeekefgpilKFEEVMKEIELkgvglpddMMEAAKTVGIRKMFLLRYLDLqgsvwplgFLMRYCFMLRdrmladpsflfkvgtekrgkDFWSEFELYLADLLVGLVVDIALVGmlapyarigqpsassglfGRIQnacgslpssvfeaerpgcrfsvKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNikkseddipvpplvkSAALWGVFLAVSSNIRYQIVNGLErivessplakqlppvaMAFTVGVRFAnniyggmqfVDWAKWSGVQ
Flexible Loop (DISEMBL)
msacsstfrlpnlpnispqnhNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELkgvglpddmMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Low Complexity Region (SEG)
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHssggdggagdspggggggggdsgggggdgegndgEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Disordered region (IsUnstruct)
********************HNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDS***************************************************************PILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWS***
Disordered Region (DISOPRED)
******T*RLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESAD************************************************LKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPY***************IQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTA**************PLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Disordered Region (DISEMBL)
********RLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Disordered Region (DISPRO)
******TFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSS*GDGGA****************************KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
225440504	443	PREDICTED: uncharacterized protein LOC10	0.712	0.627	0.787	1e-133
359479472	409	PREDICTED: uncharacterized protein LOC10	0.710	0.677	0.797	1e-131
356566573	443	PREDICTED: uncharacterized protein LOC10	0.712	0.627	0.760	1e-131
356523205	443	PREDICTED: uncharacterized protein LOC10	0.712	0.627	0.767	1e-130
255573012	419	conserved hypothetical protein [Ricinus	0.707	0.658	0.723	1e-130
15242979	433	protein reticulata-related 1 [Arabidopsi	0.723	0.651	0.764	1e-129
297812405	434	hypothetical protein ARALYDRAFT_326573 [	0.723	0.649	0.760	1e-129
224103009	278	predicted protein [Populus trichocarpa]	0.676	0.949	0.802	1e-127
449440303	439	PREDICTED: uncharacterized protein LOC10	0.712	0.633	0.732	1e-125
224138886	284	predicted protein [Populus trichocarpa]	0.692	0.950	0.774	1e-124

>gi|225440504|ref|XP_002272506.1| PREDICTED: uncharacterized protein LOC100264910 [Vitis vinifera]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/292 (78%), Positives = 257/292 (88%), Gaps = 14/292 (4%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPIL FEEVM+E + +G  LP DM+ AAK+VGIRK+ LLRYLDLQGSVWPLGF M
Sbjct: 152 EEEEFGPILSFEEVMREAQARGASLPSDMLTAAKSVGIRKILLLRYLDLQGSVWPLGFAM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVV 218
           + C MLR+RMLADPSFLFK+GTE              KRGKDFW+EFELY ADLLVG+VV
Sbjct: 212 KSCSMLRNRMLADPSFLFKIGTEIVIDSCCATFAEVQKRGKDFWAEFELYTADLLVGVVV 271

Query: 219 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 278
           +IALVGMLAPYARIGQPS S G  G +Q+A G+LPSSVFEAERPGCRFSVKQRIATYF+K
Sbjct: 272 NIALVGMLAPYARIGQPSISKGFLGHLQHAYGALPSSVFEAERPGCRFSVKQRIATYFFK 331

Query: 279 GVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRY 338
           G+LYGSVG  CG+IGQGIANLIMTAKR+IKKSE+DIPVPPLVKSAALWGVFLAVSSN RY
Sbjct: 332 GILYGSVGFACGLIGQGIANLIMTAKRSIKKSEEDIPVPPLVKSAALWGVFLAVSSNTRY 391

Query: 339 QIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 390
           QI+NGLER+VE+SPLAK++PPVAMAFTVGVRFANNIYGGMQFVDWA+WSGVQ
Sbjct: 392 QIINGLERVVEASPLAKKVPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479472|ref|XP_003632277.1| PREDICTED: uncharacterized protein LOC100854755 [Vitis vinifera]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/291 (79%), Positives = 252/291 (86%), Gaps = 14/291 (4%)

Query: 114 EKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMR 173
           E+EFG ILKFEEVM+E E +G  LP DM EAAKT GIR++ L RYLDLQGSVWPLGF M+
Sbjct: 119 EEEFGRILKFEEVMREAENRGASLPSDMWEAAKTTGIREVILFRYLDLQGSVWPLGFGMK 178

Query: 174 YCFMLRDRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVVD 219
           +  MLR+RMLADPSFLFKVGTE              KRGKDFW+EFELY ADLLVG+VVD
Sbjct: 179 HFSMLRNRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGKDFWAEFELYAADLLVGVVVD 238

Query: 220 IALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKG 279
           IALVGMLAPY R GQPS S GL GRIQ+AC +LPSSVFEAERPGCRFSVKQRIATYFYKG
Sbjct: 239 IALVGMLAPYTRFGQPSISRGLVGRIQHACAALPSSVFEAERPGCRFSVKQRIATYFYKG 298

Query: 280 VLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQ 339
           VLYGSVG  CG+IGQGIAN IMTAKR+IKKSEDDIPVPPL+KSAALWGVFLAVSSN RYQ
Sbjct: 299 VLYGSVGFGCGLIGQGIANAIMTAKRSIKKSEDDIPVPPLLKSAALWGVFLAVSSNTRYQ 358

Query: 340 IVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 390
           I+NGLE +VE+SPLAK++PPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Sbjct: 359 IINGLECVVEASPLAKKVPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566573|ref|XP_003551505.1| PREDICTED: uncharacterized protein LOC100783806 [Glycine max]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/292 (76%), Positives = 258/292 (88%), Gaps = 14/292 (4%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPILK++EVM+E E +G  LP DM+EAAK+VGIRK+ LLRYLDLQGS WPLGF M
Sbjct: 152 EEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVV 218
           + C MLR+RMLADP+FLFK+G+E              KRGKDFW+EFELYLADLLVGLVV
Sbjct: 212 KSCSMLRNRMLADPAFLFKIGSEIVIDTCCATFAEIQKRGKDFWAEFELYLADLLVGLVV 271

Query: 219 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 278
           ++ALVGMLAPYAR+G+PS SSG  GR+Q A  +LPSSVFEAERPGCRFSV+QR+ TYFYK
Sbjct: 272 NVALVGMLAPYARLGKPSISSGFLGRMQKAYAALPSSVFEAERPGCRFSVQQRLGTYFYK 331

Query: 279 GVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRY 338
           G++YG+VG  CGIIGQGIAN+IMTAKR+IKKSE+DIPVPPLVKSAALWGVFLAVSSN RY
Sbjct: 332 GIMYGAVGFACGIIGQGIANMIMTAKRSIKKSEEDIPVPPLVKSAALWGVFLAVSSNTRY 391

Query: 339 QIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 390
           Q+VNGLER+VE+SP+AKQ+PPVA+AFTVGVRFANN+YGGMQFVDWA+WSGVQ
Sbjct: 392 QVVNGLERLVEASPMAKQVPPVALAFTVGVRFANNVYGGMQFVDWARWSGVQ 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523205|ref|XP_003530232.1| PREDICTED: uncharacterized protein LOC100780872 [Glycine max]

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/292 (76%), Positives = 257/292 (88%), Gaps = 14/292 (4%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPILK++EVM+E E +G  LP DM+EAAK+VGIRK+ LLRYLDLQGS WPLGF M
Sbjct: 152 EEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVV 218
           + C MLR+RMLADP+FLFK+G+E              KRGKDFW+EFELYLADLLVGLVV
Sbjct: 212 KSCSMLRNRMLADPAFLFKIGSEIVIDTCCATFAEIQKRGKDFWAEFELYLADLLVGLVV 271

Query: 219 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 278
           ++ALVGMLAPYARIG+PS SSG  GR+Q A  +LPSSVFEAERPGCRFSV+QR+ TYFYK
Sbjct: 272 NVALVGMLAPYARIGKPSISSGFLGRMQKAYAALPSSVFEAERPGCRFSVQQRLGTYFYK 331

Query: 279 GVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRY 338
           G++YG+VG  CGIIGQGIANLIMTAKR+IK SE+DIPVPPLVKSAALWGVFLA+SSN RY
Sbjct: 332 GIMYGAVGFGCGIIGQGIANLIMTAKRSIKTSEEDIPVPPLVKSAALWGVFLAISSNTRY 391

Query: 339 QIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 390
           QIVNGLER+VE+SPLAKQ+PPVA+AFTVGVRFANN+YGGMQFVDWA+WSGVQ
Sbjct: 392 QIVNGLERLVEASPLAKQVPPVALAFTVGVRFANNVYGGMQFVDWARWSGVQ 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573012|ref|XP_002527436.1| conserved hypothetical protein [Ricinus communis] gi|223533171|gb|EEF34928.1| conserved hypothetical protein [Ricinus communis]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/318 (72%), Positives = 256/318 (80%), Gaps = 42/318 (13%)

Query: 115 KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRY 174
           KEFGPI+++E+++KE E +GV LP DM+EAAKT GIR++F+LRYLDLQGSVWPLGFLM+Y
Sbjct: 102 KEFGPIMRYEQIIKEAETRGVQLPHDMIEAAKTTGIRQLFVLRYLDLQGSVWPLGFLMKY 161

Query: 175 CFMLRDRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVVDI 220
           C MLR+RMLADPSFLFKVGTE              KRGKDFWSEFELY ADLLVG+VVDI
Sbjct: 162 CTMLRNRMLADPSFLFKVGTEIVIDSCCATFAEVHKRGKDFWSEFELYAADLLVGIVVDI 221

Query: 221 ALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGV 280
           ALV MLAPYARIG PS  SGL G +Q AC +LPSSVFEAERPGC+FSVKQRIATYFYKGV
Sbjct: 222 ALVAMLAPYARIGWPSVKSGLLGNLQQACAALPSSVFEAERPGCKFSVKQRIATYFYKGV 281

Query: 281 LYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALW-------------- 326
           LYGSVG  CG+IGQGIANLIMTAKR+IKKSE+DIPVPPLV+SAALW              
Sbjct: 282 LYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDIPVPPLVQSAALWEWSLNHMMNSYSSN 341

Query: 327 --------------GVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFAN 372
                         GVFLAVSSN RYQI+NGLER+VE SP AKQ+PPVAMAFT+GVRFAN
Sbjct: 342 PILRLSAHSSPRWSGVFLAVSSNTRYQIINGLERVVEGSPWAKQVPPVAMAFTIGVRFAN 401

Query: 373 NIYGGMQFVDWAKWSGVQ 390
           N+YGGMQFVDWAKWSGVQ
Sbjct: 402 NVYGGMQFVDWAKWSGVQ 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242979|ref|NP_197671.1| protein reticulata-related 1 [Arabidopsis thaliana] gi|13605899|gb|AAK32935.1|AF367348_1 AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|9758754|dbj|BAB09278.1| unnamed protein product [Arabidopsis thaliana] gi|19548025|gb|AAL87376.1| AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|332005693|gb|AED93076.1| protein reticulata-related 1 [Arabidopsis thaliana]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/297 (76%), Positives = 258/297 (86%), Gaps = 15/297 (5%)

Query: 109 GNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPL 168
            +  EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPL
Sbjct: 137 ADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPL 196

Query: 169 GFLMRYCFMLRDRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLV 214
           GFLMR C MLR+RMLADPSFLFKVGTE              KRG+DFWSEFELY ADLLV
Sbjct: 197 GFLMRSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLV 256

Query: 215 GLVVDIALVGMLAPYARIGQPS-ASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIA 273
           GLVVD+ALVG+LAPYARIG+PS AS+GLF  ++ AC SLPSSVFEAERPGC+FSV QRIA
Sbjct: 257 GLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIA 316

Query: 274 TYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVS 333
           T+FYKG+LYGSVG  CG+IGQGIANLIMTAKR++KKSE+D+P+PPL +SAALWGVFL +S
Sbjct: 317 TFFYKGLLYGSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLS 376

Query: 334 SNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 390
           SN RYQI+NGLER+VE S  AK++P VAMAFTVGVRFANN+YGGMQFVDWAK SGVQ
Sbjct: 377 SNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 433

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812405|ref|XP_002874086.1| hypothetical protein ARALYDRAFT_326573 [Arabidopsis lyrata subsp. lyrata] gi|297319923|gb|EFH50345.1| hypothetical protein ARALYDRAFT_326573 [Arabidopsis lyrata subsp. lyrata]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/297 (76%), Positives = 258/297 (86%), Gaps = 15/297 (5%)

Query: 109 GNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPL 168
            +  EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VG+RK+FLLRYLDLQGSVWPL
Sbjct: 138 ADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGLRKLFLLRYLDLQGSVWPL 197

Query: 169 GFLMRYCFMLRDRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLV 214
           GFLMR C MLR+RMLADPSFLFKVGTE              KRG+DFWSEFELY ADLLV
Sbjct: 198 GFLMRSCAMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLV 257

Query: 215 GLVVDIALVGMLAPYARIGQPS-ASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIA 273
           GLVVD+ALVG+LAPYARIG+PS AS+GLF  ++ AC SLPSSVFEAERPGC+FSV QRIA
Sbjct: 258 GLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIA 317

Query: 274 TYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVS 333
           T+FYKG+LYGSVG  CG+IGQGIANLIMTAKR++KKSE+D+P+PPL +SAALWGVFL +S
Sbjct: 318 TFFYKGLLYGSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGIS 377

Query: 334 SNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 390
           SN RYQI+NGLER+VE S  AK++P VAMAFTVGVRFANN+YGGMQFVDWAK SGVQ
Sbjct: 378 SNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 434

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103009|ref|XP_002312888.1| predicted protein [Populus trichocarpa] gi|222849296|gb|EEE86843.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/278 (80%), Positives = 245/278 (88%), Gaps = 14/278 (5%)

Query: 127 MKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADP 186
           MKEIE +GV LP DMMEAAK++GIRKMFLLRYLDLQGS WPLGFLM+YC MLR+RMLADP
Sbjct: 1   MKEIEARGVELPADMMEAAKSIGIRKMFLLRYLDLQGSAWPLGFLMKYCTMLRNRMLADP 60

Query: 187 SFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARI 232
           SFLFKVGTE              KRGKDFWSEFELY ADLLVG+VVD ALVG+LAPYARI
Sbjct: 61  SFLFKVGTEIVIDSCCATFAEVQKRGKDFWSEFELYAADLLVGIVVDFALVGLLAPYARI 120

Query: 233 GQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGII 292
           G+P+ S GLFG IQ AC +LPSSVFEAERPGC+FSVKQR ATYFYKGVLYGSVG  CG+I
Sbjct: 121 GKPAVSGGLFGSIQQACAALPSSVFEAERPGCKFSVKQRTATYFYKGVLYGSVGFGCGLI 180

Query: 293 GQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSP 352
           GQGIANLIMTAKR+IKKS++DIPVPPLV+SA LWGVFLA+SSN RYQI+NGLE +VE+SP
Sbjct: 181 GQGIANLIMTAKRSIKKSDEDIPVPPLVQSAVLWGVFLALSSNTRYQIINGLEHLVEASP 240

Query: 353 LAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 390
           +AKQ+PPVAMAFTVGVRFANNIYGGMQFVDWAK SGVQ
Sbjct: 241 VAKQVPPVAMAFTVGVRFANNIYGGMQFVDWAKLSGVQ 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440303|ref|XP_004137924.1| PREDICTED: uncharacterized protein LOC101202748 [Cucumis sativus] gi|449483677|ref|XP_004156657.1| PREDICTED: uncharacterized protein LOC101226426 [Cucumis sativus]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/292 (73%), Positives = 249/292 (85%), Gaps = 14/292 (4%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPI+KFEEVMKE+E +GV LP DM+EAAK+ GIRK+ LLRYL++QG  WPLGFLM
Sbjct: 148 EEEEFGPIMKFEEVMKELESRGVTLPSDMLEAAKSEGIRKLLLLRYLEMQGLGWPLGFLM 207

Query: 173 RYCFMLRDRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVV 218
           R C M+R+R+LADPSF FKVG E              KRGKDFW+EFELYLAD+LVG+ V
Sbjct: 208 RSCAMIRNRVLADPSFFFKVGVELVIDSCCATFAEVQKRGKDFWTEFELYLADILVGVAV 267

Query: 219 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 278
           + ALV +LAPYAR GQPS S G  GRIQ+AC +LPSSVFEAERPGCRFSV+QRIAT+FYK
Sbjct: 268 NFALVALLAPYARFGQPSVSKGFLGRIQHACEALPSSVFEAERPGCRFSVQQRIATFFYK 327

Query: 279 GVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRY 338
           G++YG VG  CGIIGQGIANLIMTAKR+IKKSE+++PVPPL KSAALWGVFLA+SSN RY
Sbjct: 328 GLVYGVVGFGCGIIGQGIANLIMTAKRSIKKSENEVPVPPLFKSAALWGVFLALSSNTRY 387

Query: 339 QIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 390
           QI+NGLER+VESSPLAK +P VAMAFTVG+RF NN+Y GMQF+DWA+WSGVQ
Sbjct: 388 QIINGLERVVESSPLAKNIPAVAMAFTVGIRFGNNVYAGMQFIDWARWSGVQ 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138886|ref|XP_002322926.1| predicted protein [Populus trichocarpa] gi|222867556|gb|EEF04687.1| predicted protein [Populus trichocarpa]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/284 (77%), Positives = 247/284 (86%), Gaps = 14/284 (4%)

Query: 121 LKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRD 180
           +KFEEVMKE E +G  LP DM+EAAKT+GIRK+ LLRYLDLQG+   LGF ++ C MLR+
Sbjct: 1   MKFEEVMKETEARGASLPPDMLEAAKTIGIRKVLLLRYLDLQGAGGLLGFAIKSCAMLRN 60

Query: 181 RMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVVDIALVGML 226
           RMLADPSFLFK+GTE              KRGKDFW+EFELY+ADLLVG+VV+IALVGML
Sbjct: 61  RMLADPSFLFKIGTEIVIDSCCATFAEVQKRGKDFWAEFELYVADLLVGVVVNIALVGML 120

Query: 227 APYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVG 286
           APY RIGQPS S G  GR+Q+A G+LPSSVFEAERPGCRFSV+QRI TYFYKGVLYGSVG
Sbjct: 121 APYVRIGQPSLSKGFLGRLQHAYGALPSSVFEAERPGCRFSVQQRIGTYFYKGVLYGSVG 180

Query: 287 LVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLER 346
             CGIIGQGIANLIMTAKR+IKKSE+DIPVPPL+KSAALWGVFLAVSSN RYQ++NGLER
Sbjct: 181 FACGIIGQGIANLIMTAKRSIKKSEEDIPVPPLLKSAALWGVFLAVSSNTRYQVINGLER 240

Query: 347 IVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 390
           +VE SP+AKQ+PPVAMAFTVGVRFANNIYGGMQFVDWA+WSGVQ
Sbjct: 241 LVEGSPMAKQVPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
TAIR|locus:2158155	433	RER1 "AT5G22790" [Arabidopsis	0.712	0.642	0.774	1.3e-118
TAIR|locus:2065649	432	LCD1 "AT2G37860" [Arabidopsis	0.712	0.643	0.732	6.1e-110
TAIR|locus:505006615	386	AT5G12470 "AT5G12470" [Arabido	0.664	0.670	0.290	8.4e-26
TAIR|locus:2077838	337	AT3G08640 "AT3G08640" [Arabido	0.541	0.626	0.356	1.1e-23
TAIR|locus:2077828	339	AT3G08630 "AT3G08630" [Arabido	0.543	0.625	0.333	3.4e-22
TAIR|locus:2078446	745	AT3G56140 "AT3G56140" [Arabido	0.5	0.261	0.297	9.3e-16
TAIR|locus:2063136	735	AT2G40400 [Arabidopsis thalian	0.5	0.265	0.282	1.8e-14
TAIR|locus:2176826	521	AT5G24690 "AT5G24690" [Arabido	0.461	0.345	0.305	4.2e-12

TAIR|locus:2158155 RER1 "AT5G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
 Identities = 227/293 (77%), Positives = 257/293 (87%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPLGFLM
Sbjct:   141 EEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLM 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVV 218
             R C MLR+RMLADPSFLFKVGTE              KRG+DFWSEFELY ADLLVGLVV
Sbjct:   201 RSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVV 260

Query:   219 DIALVGMLAPYARIGQPS-ASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFY 277
             D+ALVG+LAPYARIG+PS AS+GLF  ++ AC SLPSSVFEAERPGC+FSV QRIAT+FY
Sbjct:   261 DVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFY 320

Query:   278 KGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIR 337
             KG+LYGSVG  CG+IGQGIANLIMTAKR++KKSE+D+P+PPL +SAALWGVFL +SSN R
Sbjct:   321 KGLLYGSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNAR 380

Query:   338 YQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 390
             YQI+NGLER+VE S  AK++P VAMAFTVGVRFANN+YGGMQFVDWAK SGVQ
Sbjct:   381 YQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 433

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2065649 LCD1 "AT2G37860" [Arabidopsis thaliana (taxid:3702)]

 Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
 Identities = 214/292 (73%), Positives = 240/292 (82%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G  LP DM+EAAK  GIRK+ LLRYLDLQ S   LGF +
Sbjct:   141 EEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAI 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVV 218
             R   MLR+RMLADPSFLFK+G E              KRGKDFW+EFELY+ADLLVG VV
Sbjct:   201 RSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVV 260

Query:   219 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 278
             +IALVGMLAPY R GQPSAS G  GR+  A  +LPSSVFEAERPGCRFS +QR+ATYFYK
Sbjct:   261 NIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPSSVFEAERPGCRFSAQQRLATYFYK 320

Query:   279 GVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRY 338
             G++YG+VG  CGI+GQGIANLIMTAKRNI KSE++IPVPPL+KSAALWGVFL+VSSN RY
Sbjct:   321 GIMYGAVGFGCGIVGQGIANLIMTAKRNINKSEENIPVPPLIKSAALWGVFLSVSSNTRY 380

Query:   339 QIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 390
             QI+NGLER+VE+SP AK+ PP AMAFTVGVR ANNIYGGMQFVDWA+ SG Q
Sbjct:   381 QIINGLERVVEASPFAKKFPPAAMAFTVGVRLANNIYGGMQFVDWARLSGCQ 432

GO:0003674 "molecular_function" evidence=ND

GO:0048366 "leaf development" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:505006615 AT5G12470 "AT5G12470" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 82/282 (29%), Positives = 145/282 (51%)

Query:   126 VMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLAD 185
             ++KE  ++   LP D+  A +   I    + R+L+LQ S   + +LM++    R+R+LAD
Sbjct:   108 LLKESGIELESLPKDLAAAIEAGRIPGSVITRFLELQKSA-VMRWLMQFGGF-RERLLAD 165

Query:   186 PSFLFK------VGT--------EKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYAR 231
               F+ K      VG         E+R ++F++E E+  AD+ + ++ D  LV + AP   
Sbjct:   166 DLFMAKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVS 225

Query:   232 IGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGI 291
             +  P A +   G I     + P + F+    G  +++ QR+      G    +VG    +
Sbjct:   226 LRPPLALTA--GGISKFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSL 283

Query:   292 IGQGIANLIMTAKRNI-KKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGL--ERIV 348
             +G  I N  + A++ + + SE ++   P+V ++  +GV++AVSSN+RYQIV G+  +R++
Sbjct:   284 VGTAITNAFIKARKAVDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGVIEQRLL 343

Query:   349 ESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 390
             E  P+  Q      A    VR  N   G + +VD+A+  G+Q
Sbjct:   344 E--PMLHQHKLALSALCFAVRTGNTFLGSLLWVDYARLIGIQ 383

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2077838 AT3G08640 "AT3G08640" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 88/247 (35%), Positives = 126/247 (51%)

Query:   162 QGSVW-PLGFLMRYCFMLRDRMLADPSFLFKVGTEK--------------RGKDFWSEFE 206
             + S W P+G  ++     R R+ ADP F FKV  E+              R     +E +
Sbjct:    94 ESSPWGPIGLFIQGW---RSRVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELD 150

Query:   207 LYLADLLVGLVVDIALVGMLAPYAR-IGQPSASSGLFGRIQNACGSLPSSVFEAERPGCR 265
                + L+VG +++  L+ MLAP A  +G      G+F   +N C S  S +FE    G  
Sbjct:   151 FVFSTLVVGSILNFVLMYMLAPTAATLGSSQTLPGIF---RN-CPS--SHMFEQ---GS- 200

Query:   266 FSVKQRIATYFYKGVLYGSVGLVCGIIGQGIAN-LIMTAKRNIKKSEDDIPVPPLVKSAA 324
             F+V  R  T  YKG+++ SVGL  G++G  I+N LIM  K+     E     PP V ++ 
Sbjct:   201 FTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLRKKMDPSFETPNKPPPTVLNSL 260

Query:   325 LWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGV-RFANNIYGGMQFVDW 383
              W   + VS+N RYQ +NG+E +     LAK LPP+    +V V R ANN+ GGM FV  
Sbjct:   261 TWATHMGVSANARYQTLNGIEFL-----LAKVLPPLVFKTSVIVLRCANNVAGGMSFVLL 315

Query:   384 AKWSGVQ 390
             A+ +G Q
Sbjct:   316 ARMTGSQ 322

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2077828 AT3G08630 "AT3G08630" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 82/246 (33%), Positives = 123/246 (50%)

Query:   162 QGSVW-PLGFLMRYCFMLRDRMLADPSFLFKV-------------GTEKRGKDFW-SEFE 206
             + S W PLG  ++     R R+ AD  F FKV             G      +F  +E +
Sbjct:    91 ESSPWGPLGLFIQGW---RSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELD 147

Query:   207 LYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRF 266
                + L+VG +++  L+ +LAP A I     SS L   I  +C S  S +FE    G  F
Sbjct:   148 FVFSTLVVGSILNFTLMYLLAPSA-ISH--GSSNLLPGIFRSCPS--SHMFEQ---G-NF 198

Query:   267 SVKQRIATYFYKGVLYGSVGLVCGIIGQGIAN-LIMTAKRNIKKSEDDIPVPPLVKSAAL 325
             ++  R  T  YKG+++ +VGL  G++G  I+N LIM  K+     E     PP + ++  
Sbjct:   199 TLMNRFGTLVYKGMVFATVGLAAGLVGTAISNGLIMLRKKIDPSFETPNKPPPTLLNSLT 258

Query:   326 WGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTV-GVRFANNIYGGMQFVDWA 384
             W   + VS+N+RYQ +NG E ++E     K LPP+    +V  +R  NN+ GGM FV  A
Sbjct:   259 WATHMGVSANVRYQTLNGAEFLLE-----KSLPPLVFKTSVIALRVVNNVLGGMSFVTLA 313

Query:   385 KWSGVQ 390
             + +G Q
Sbjct:   314 RMTGSQ 319

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2078446 AT3G56140 "AT3G56140" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 9.3e-16, P = 9.3e-16
 Identities = 60/202 (29%), Positives = 101/202 (50%)

Query:   195 EKRGKDFWSEFELYLADLLVGLVVDIALVGMLAP---YARIGQPSASSGLFGRIQNACGS 251
             EKR ++F+ E +  + D + G VVD   V + AP   +      +        ++   GS
Sbjct:   508 EKRKENFFEEIDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADETTGPDSIDALRGLLGS 567

Query:   252 LPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSE 311
             +P + F+    G  +++  RIA+    G+    VG+V      G +N +  A++ IK   
Sbjct:   568 IPDNAFQKSLAGREWNLNLRIASVIVGGLKLAGVGVVSSFAAVGASNALNIARKVIKPEL 627

Query:   312 DDIPVP---PLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGV 368
                  P   PL+K+A ++G FL  S+N+RYQI+ GL     S  L+ Q P +  A +  V
Sbjct:   628 VVAEKPKRSPLLKTAMVYGGFLGTSANLRYQIIAGLIEHRLSDELSSQ-PLLVNAISFVV 686

Query:   369 RFANNIYGGMQFVDWAKWSGVQ 390
             R  N+ +G  Q++D A+ +G+Q
Sbjct:   687 RTLNSYFGTQQWIDLARSTGLQ 708

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

TAIR|locus:2063136 AT2G40400 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 57/202 (28%), Positives = 99/202 (49%)

Query:   195 EKRGKDFWSEFELYLADLLVGLVVDIALVGMLAP---YARIGQPSASSGLFGRIQNACGS 251
             EKR ++F+ E +  + D +   VVD   V + AP   +      +        ++   GS
Sbjct:   499 EKRKENFFEELDYVITDSVRASVVDFFTVWLPAPTLSFISYADETIGPNSIDALRGLLGS 558

Query:   252 LPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKS- 310
             +P + F+    G  +++  RIA+    G+    VG+V      G +N +   ++ IK   
Sbjct:   559 IPDNAFQKSLGGQEWTLSLRIASVIIGGLKLAGVGVVSSFAAVGSSNALYAIRKFIKPEL 618

Query:   311 --EDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGV 368
                +     P++K+A ++G +L  SSNIRYQI+ GL     S  L+ Q P +    +  V
Sbjct:   619 GVGEQAKRSPMLKTALVYGGYLGTSSNIRYQIIAGLIEHRISDELSSQ-PLLVNMISFVV 677

Query:   369 RFANNIYGGMQFVDWAKWSGVQ 390
             R AN+ +G  Q++D A+ +G+Q
Sbjct:   678 RVANSYFGTQQWIDLARSTGLQ 699

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2176826 AT5G24690 "AT5G24690" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 63/206 (30%), Positives = 101/206 (49%)

Query:   181 RMLADPSFLFKVGTEKR---GKDFW-----------SEFELYLADLLVGLVVDIALVGML 226
             RMLADP+FL+K+  E+    G   W            E++L L ++L     + A V +L
Sbjct:   240 RMLADPAFLYKLLLEQAATVGCSVWWEVKNRKNRLKEEWDLALINVLTVSACNAAAVWLL 299

Query:   227 APYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVG 286
             AP    G    ++  F  +QN    LP+++FE   P   F +++R  + FYK      +G
Sbjct:   300 APCRSYG----NTFRFD-LQNTLQKLPNNLFEMSYPLREFDLQKRFHSLFYKAAELSILG 354

Query:   287 LVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLER 346
             L  G + QG  + ++  K   KK+   + VP +  +A  +G FL + +N+RYQ++ G ER
Sbjct:   355 LAAGTL-QGSLSNVLAGK---KKNRVSVTVPSISTNALGYGAFLGIYANLRYQLLCGFER 410

Query:   347 IVESSPLAKQLPPVAMAFTVGVRFAN 372
              V S      +  VA+ F   +R  N
Sbjct:   411 GVSSH---FDVIGVALFFGTALRIMN 433


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      390       356   0.00080  117 3  11 22  0.36    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  234 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.69u 0.11s 25.80t   Elapsed:  00:00:01
  Total cpu time:  25.69u 0.11s 25.80t   Elapsed:  00:00:01
  Start:  Sat May 11 05:48:10 2013   End:  Sat May 11 05:48:11 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	390
pfam11891	179	pfam11891, DUF3411, Domain of unknown function (DU	3e-75
PRK05325	401	PRK05325, PRK05325, hypothetical protein; Provisio	2e-05
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	2e-05
PHA00370	297	PHA00370, III, attachment protein	6e-04
COG1512	271	COG1512, COG1512, Beta-propeller domains of methan	0.002
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	0.003

>gnl|CDD|221294 pfam11891, DUF3411, Domain of unknown function (DUF3411)

 Score =  231 bits (590), Expect = 3e-75
 Identities = 87/181 (48%), Positives = 119/181 (65%), Gaps = 17/181 (9%)

Query: 180 DRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVVDIALVGM 225
           +R+LADPSFLFK+  E              KRG++FW+EF+L  ADLLVG VV+ ALV +
Sbjct: 1   ERLLADPSFLFKLAMEEVIDICAATVAEVEKRGENFWAEFDLVAADLLVGSVVNFALVYL 60

Query: 226 LAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSV 285
           LAP    G  +A     G ++   GSLPS+VFE   PG  +S++QR  T FYKG    +V
Sbjct: 61  LAPTRSFGSTAAEM--AGGLRKFLGSLPSNVFEKGLPGRSYSLQQRFGTVFYKGAKLAAV 118

Query: 286 GLVCGIIGQGIANLIMTAKRNIKK-SEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGL 344
           G + G++GQ I+N +M A++ + K SE+ + VPPL K+A LWG FL VS+N+RYQ++NGL
Sbjct: 119 GFIAGLVGQAISNALMAARKAVDKNSEESVKVPPLFKTALLWGAFLGVSANLRYQLLNGL 178

Query: 345 E 345
           E
Sbjct: 179 E 179

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif. Length = 179

>gnl|CDD|235409 PRK05325, PRK05325, hypothetical protein; Provisional

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 12/79 (15%)

Query: 58  KTIEIPGKITEE------SADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGND 111
           + + IP +  +E             +    G+   GD  G   GGGG  G GGGDGEG D
Sbjct: 37  EVVSIPIRDIDEPKFRYGRGGKREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGDGEGED 96

Query: 112 GEE-----KEFGPILKFEE 125
             E     +E   +L FE+
Sbjct: 97  YFEFEISLEELLDLL-FED 114

Length = 401

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 2   SACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIE 61
           S   S     +L +  PQ  +         S + +T +  A      +  +  ++  +  
Sbjct: 5   STMVSAAASTSLSSSRPQLSSFSS-----RSPQSATRSPRA----SSIKCSASASASSSA 55

Query: 62  IPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGE 113
                +  +         S      G   GGGG GG   GGGGG G G    
Sbjct: 56  TSSSASLVAN--GAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGWR 105

Length = 796

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 80  SGGDGGAGDSPGG-GGGGGGDSGGGGGDGEGNDGEEKEFG 118
           +GGD G G++ GG GGG  G SGGGG DG G++G      
Sbjct: 96  TGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKS 135

Length = 297

>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 16/33 (48%), Positives = 16/33 (48%)

Query: 75  PRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDG 107
                  G  G G S GG  GGGG SGGGG  G
Sbjct: 237 SSGSGGSGGSGGGSSGGGFSGGGGSSGGGGASG 269

Length = 271

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 19/34 (55%), Positives = 20/34 (58%)

Query: 79  SSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
            SGG GG GD  G GGGGGG  GG GG+     G
Sbjct: 113 GSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGG 146

Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	390
PF11891	180	DUF3411: Domain of unknown function (DUF3411); Int	100.0
PRK05325	401	hypothetical protein; Provisional	91.78
PLN03138	796	Protein TOC75; Provisional	91.66
TIGR02877	371	spore_yhbH sporulation protein YhbH. This protein	91.61
PF04285	421	DUF444: Protein of unknown function (DUF444); Inte	89.72
COG4907	595	Predicted membrane protein [Function unknown]	87.86

>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=5.7e-68  Score=484.12  Aligned_cols=165  Identities=47%  Similarity=0.912  Sum_probs=158.2

Q ss_pred             hhhhcCCcchhhhhhc--------------ccCCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcCCchhhhH
Q 016412          180 DRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRI  245 (390)
Q Consensus       180 ~RlLADP~FlfKL~iE--------------~R~e~F~~ElDfV~sd~v~g~v~nf~LVwLlAPt~s~g~~~~s~g~~~~l  245 (390)
                      |||||||+|||||+||              +|+|+||+|||||++|+++++|+||+||||||||+++++++++.. .+.+
T Consensus         1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~-~~~~   79 (180)
T PF11891_consen    1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSP-GGGL   79 (180)
T ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCccccccc-chHH
Confidence            7999999999999999              899999999999999999999999999999999999998775432 2689


Q ss_pred             HHHhccCCCCccccCCCCCCCChhhhHHHHHhcCeeeehhhhhHhhHHHHHHHHHHHHhhhcCCC-CCCCCCChhhhhHH
Q 016412          246 QNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKS-EDDIPVPPLVKSAA  324 (390)
Q Consensus       246 ~~~~~slP~naFq~~~pG~~fsl~qR~ga~v~KG~~l~~VGf~aGlvG~glSN~L~~~Rr~~~~s-~~~~~~PPv~~tAl  324 (390)
                      |+++++||+||||+++||++||++||++||+|||++|++|||+||++||++||+|+++||+++|+ ++++++|||++||+
T Consensus        80 ~~~~~~~P~n~Fq~~~~g~~fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~lsn~L~~~rk~~~~~~e~~~~~ppv~~ta~  159 (180)
T PF11891_consen   80 QKFLGSLPNNAFQKGYPGRSFSLAQRIGAFVYKGAKLAAVGFIAGLVGTGLSNALIAARKKVDPSFEPSVPVPPVLKTAL  159 (180)
T ss_pred             HHHHHhChHHHhccCCCCCcccHHHHHHHHHHcchHhhhhHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999985 78999999999999


Q ss_pred             HHHHHHhhhhhhHHHHHHhHH
Q 016412          325 LWGVFLAVSSNIRYQIVNGLE  345 (390)
Q Consensus       325 ~wg~fMGvSSNlRYQil~GlE  345 (390)
                      +||+|||+|||+|||+|||+|
T Consensus       160 ~~g~fmGvSsNlRYQil~GiE  180 (180)
T PF11891_consen  160 GWGAFMGVSSNLRYQILNGIE  180 (180)
T ss_pred             HHHHHHhhhHhHHHHHHcCCC
Confidence            999999999999999999987

This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.

>PRK05325 hypothetical protein; Provisional

Probab=91.78  E-value=0.36  Score=50.32  Aligned_cols=78  Identities=32%  Similarity=0.410  Sum_probs=35.9

Q ss_pred             CCeeecCCCCCcCcCCCCcccccCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCccCHHHHHHHHH
Q 016412           56 TPKTIEIPGKITEESADCEPRIHSSGGDGGA----GDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIE  131 (390)
Q Consensus        56 ~p~~~~i~g~~~~~~~~~~~~~~~~~g~g~~----g~~~g~~~~~~g~~ggg~g~g~~~~~~~~e~g~~l~~~~Vm~~a~  131 (390)
                      +.+.+||++-+++.-.|...+-..+.|.|..    |+--+-..|+|+|+|.|+++|+|+|+-+    ==++.||.++.--
T Consensus        37 ~~v~IPi~~i~Ep~F~~g~~~~~~~Vg~Gn~~~~~GD~i~rp~g~g~G~G~~~~~geGeD~fe----~els~eE~~~~lf  112 (401)
T PRK05325         37 EVVSIPIRDIDEPKFRYGRGGKREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGDGEGEDYFE----FEISLEELLDLLF  112 (401)
T ss_pred             ceEEecCCCCccceEEeCCCCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcceEE----EEecHHHHHHHHH
Confidence            4677788777776555554421122222222    3322222122222223333333444443    3477888877665


Q ss_pred             HcCCCCc
Q 016412          132 LKGVGLP  138 (390)
Q Consensus       132 ~~~~sLP  138 (390)
                      ... .||
T Consensus       113 EdL-eLP  118 (401)
T PRK05325        113 EDL-ELP  118 (401)
T ss_pred             hhc-CCC
Confidence            433 344

>PLN03138 Protein TOC75; Provisional

Probab=91.66  E-value=0.48  Score=53.17  Aligned_cols=21  Identities=24%  Similarity=0.176  Sum_probs=16.1

Q ss_pred             CcccccccCCCCCCCCCCCCc
Q 016412            2 SACSSTFRLPNLPNISPQNHN   22 (390)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~   22 (390)
                      ++|.+.++-++++.-.||+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~   25 (796)
T PLN03138          5 STMVSAAASTSLSSSRPQLSS   25 (796)
T ss_pred             cccceeccCCCccCCCccccc
Confidence            578888888888887777654

>TIGR02877 spore_yhbH sporulation protein YhbH

Probab=91.61  E-value=0.35  Score=49.98  Aligned_cols=78  Identities=28%  Similarity=0.389  Sum_probs=35.9

Q ss_pred             CCeeecCCCCCcCcCCC---CcccccCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCcccccCCccCHHHHHHHHH
Q 016412           56 TPKTIEIPGKITEESAD---CEPRIHSSGGDGGAGDSPGGG-GGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIE  131 (390)
Q Consensus        56 ~p~~~~i~g~~~~~~~~---~~~~~~~~~g~g~~g~~~g~~-~~~~g~~ggg~g~g~~~~~~~~e~g~~l~~~~Vm~~a~  131 (390)
                      +.+.+||++-+++.-.|   .+.+++.+.|+---|+-=+-. +|+|||+|.|.|+|+|+|+=|    ==++.||.++.--
T Consensus        49 ~~V~IPir~l~Ep~F~~g~~~~~~Vg~Gng~~~~GD~i~rp~~~~ggg~g~gag~geGed~fe----~e~s~eE~~~~lf  124 (371)
T TIGR02877        49 KKIKVPIRGLKEYRFRYDWNKQKRVGQGDGNEKVGDVIGRERAGGEGGGGKGAGDQEGEDYYE----TEVTLEELFELLF  124 (371)
T ss_pred             ceEEccCCCCccceEEeCCCCCCeecCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcceEE----EEecHHHHHHHHH
Confidence            36777777766654333   333444333322223331111 111112223344444555444    3478888887765


Q ss_pred             HcCCCCc
Q 016412          132 LKGVGLP  138 (390)
Q Consensus       132 ~~~~sLP  138 (390)
                      .-. .||
T Consensus       125 EdL-eLP  130 (371)
T TIGR02877       125 EDL-ELP  130 (371)
T ss_pred             hhc-cCC
Confidence            543 355

This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.

>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56

Probab=89.72  E-value=0.75  Score=48.27  Aligned_cols=72  Identities=35%  Similarity=0.528  Sum_probs=31.7

Q ss_pred             CCeeecCCCCCcCcCCCCc----ccccCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCcccccCCccCHHHHHH
Q 016412           56 TPKTIEIPGKITEESADCE----PRIHSSGGDGGAGDS---PGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMK  128 (390)
Q Consensus        56 ~p~~~~i~g~~~~~~~~~~----~~~~~~~g~g~~g~~---~g~~~~~~g~~ggg~g~g~~~~~~~~e~g~~l~~~~Vm~  128 (390)
                      +.+.+||.+=+++.-.|-.    ..+..+.|++..|+-   +++++|+|+|+|+|.|+|+|+|+-+    --++.||.++
T Consensus        50 ~~V~IP~r~l~Ep~Fr~g~gg~~~~Vg~Gnge~~~GD~I~rp~~g~g~g~G~g~gag~geGeD~fe----~els~eE~~~  125 (421)
T PF04285_consen   50 EKVSIPIRGLEEPRFRHGQGGQREHVGPGNGEFKEGDVIGRPPGGGGGGDGGGQGAGDGEGEDDFE----FELSREEFLD  125 (421)
T ss_pred             ceEeecCCCCCCCceeCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCeEE----EEEEHHHHHH
Confidence            3566666665555333322    333333333323332   2222222222233344444554433    4467777766


Q ss_pred             HHH
Q 016412          129 EIE  131 (390)
Q Consensus       129 ~a~  131 (390)
                      .--
T Consensus       126 llf  128 (421)
T PF04285_consen  126 LLF  128 (421)
T ss_pred             HhH
Confidence            543

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].

>COG4907 Predicted membrane protein [Function unknown]

Probab=87.86  E-value=0.39  Score=51.21  Aligned_cols=11  Identities=0%  Similarity=-0.067  Sum_probs=5.7

Q ss_pred             eeeecccccCC
Q 016412           30 FLSLRHSTATN   40 (390)
Q Consensus        30 ~~~~~~~~~~~   40 (390)
                      |.-.||+-.+.
T Consensus       546 ~~i~h~nysr~  556 (595)
T COG4907         546 SPIFHNNYSRS  556 (595)
T ss_pred             eeEEecchhhh
Confidence            34456665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00