Citrus Sinensis ID: 016418
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | 2.2.26 [Sep-21-2011] | |||||||
| Q5SR56 | 506 | Hippocampus abundant tran | yes | no | 0.682 | 0.525 | 0.244 | 3e-10 | |
| B2RYH9 | 507 | Hippocampus abundant tran | yes | no | 0.682 | 0.524 | 0.244 | 4e-10 | |
| A4IF94 | 502 | Hippocampus abundant tran | yes | no | 0.664 | 0.515 | 0.245 | 5e-10 | |
| Q8CIA9 | 507 | Hippocampus abundant tran | yes | no | 0.684 | 0.526 | 0.248 | 7e-10 | |
| P70187 | 490 | Hippocampus abundant tran | no | no | 0.671 | 0.534 | 0.232 | 1e-08 | |
| Q96MC6 | 490 | Hippocampus abundant tran | no | no | 0.671 | 0.534 | 0.232 | 2e-08 |
| >sp|Q5SR56|HIAL1_HUMAN Hippocampus abundant transcript-like protein 1 OS=Homo sapiens GN=HIATL1 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 134/323 (41%), Gaps = 57/323 (17%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLL------------- 99
++GL Q V G+ + PL+G L+D +GRKP LL TV T P L+
Sbjct: 81 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISPWWYFAMISV 140
Query: 100 --AFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYAVSIALLIFVPVYMQ--------- 148
F+ + ++AY T + S + ++ +A S+ + Y+
Sbjct: 141 SGVFSVTFSVIFAYVADVTQEHERST-AYGWVSATFAASLVSSPAIGAYLSASYGDSLVV 199
Query: 149 ------------FFLVETVESAPRKDQESS-GLK---KAVNVLDRRYKSMRDAALMVVSS 192
F LV ES P K + S G + K + K +D+ +++
Sbjct: 200 LVATVVALLDICFILVAVPESLPEKMRPVSWGAQISWKQADPFASLKKVGKDSTVLL--- 256
Query: 193 PTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQ-----I 247
I F L +G + YL+ V GF + + + MVGI SIV+Q I
Sbjct: 257 -----ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAMVGILSIVAQTAFLSI 311
Query: 248 LVLPLLNPFVALLA---SIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASG 304
L+ L N LL + +YG +W+ + + + + + P+ A++S+ +
Sbjct: 312 LMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPAISALVSRNAE 371
Query: 305 LNNQGKAQGFIAGVQSISSLLSP 327
+ QG AQG I G++ + + L P
Sbjct: 372 SDQQGVAQGIITGIRGLCNGLGP 394
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Homo sapiens (taxid: 9606) |
| >sp|B2RYH9|HIAL1_RAT Hippocampus abundant transcript-like protein 1 OS=Rattus norvegicus GN=Hiatl1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 133/323 (41%), Gaps = 57/323 (17%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLL------------- 99
++GL Q V G+ + PL+G L+D +GRKP LL TV T P L+
Sbjct: 83 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISPWWYFGMISV 142
Query: 100 --AFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYAVSIALLIFVPVYMQ--------- 148
F+ + ++AY T + S + ++ +A S+ + Y+
Sbjct: 143 SGVFSVTFSVIFAYVADFTQEHERST-AYGWVSATFAASLVSSPAIGTYLSSNYGDSLVV 201
Query: 149 ------------FFLVETVESAPRKDQESS-GLK---KAVNVLDRRYKSMRDAALMVVSS 192
F LV ES P K + +S G + K + K +D+ +++
Sbjct: 202 LVATVVALLDICFILVAVPESLPEKIRPASWGAQISWKQADPFASLKKVGKDSTVLL--- 258
Query: 193 PTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPL 252
I F L +G + YL+ V GF + + MVGI SI++Q + L
Sbjct: 259 -----ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAMVGILSILAQTVFLSK 313
Query: 253 L-----NPFVALLA---SIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASG 304
L N LL I +YG +W+ + + + + + P+ A+IS+ +
Sbjct: 314 LMRSLGNKNTVLLGLGFQILQLAWYGFGAQAWMMWAAGTVAAMSSITFPAVSALISRNAE 373
Query: 305 LNNQGKAQGFIAGVQSISSLLSP 327
+ QG AQG I G++ + + L P
Sbjct: 374 SDQQGVAQGIITGIRGLCNGLGP 396
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Rattus norvegicus (taxid: 10116) |
| >sp|A4IF94|HIAL1_BOVIN Hippocampus abundant transcript-like protein 1 OS=Bos taurus GN=HIATL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 134/330 (40%), Gaps = 71/330 (21%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYY 112
++GL Q V G+ + PL+G L+D +GRKP LL TV T P L+ + + Y+
Sbjct: 78 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISP-----WWYF 132
Query: 113 VLRTISYIISQGSIFCIAVAYAVSI------------------ALLIFVPV---YMQ--- 148
+ +IS + S F + AY + A L+ P Y+
Sbjct: 133 AMISISGVFS--VTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASY 190
Query: 149 ------------------FFLVETVESAPRKDQE-SSGLK---KAVNVLDRRYKSMRDAA 186
F L+ ES P K + S G + K + K +D+
Sbjct: 191 GDSLVVLVATVVALLDICFILLAVPESLPEKMRPLSWGARISWKQADPFASLKKVGKDST 250
Query: 187 LMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQ 246
+++ I F L +G + YL+ V GF + + + MVGI SIV+Q
Sbjct: 251 ILL--------ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSIKIAAFIAMVGILSIVAQ 302
Query: 247 ILVLPLL-----NPFVALLASIAYALF----YGLAWASWVPYLSASFGVIYVLVKPSTYA 297
+ L L N LL + + +F YG +W+ + + + + P+
Sbjct: 303 TVFLTSLMRSLGNKNTVLLG-LGFQMFQLAWYGFGSQAWMMWAAGIVAAVSSITFPAVST 361
Query: 298 IISKASGLNNQGKAQGFIAGVQSISSLLSP 327
++S+ + N QG AQG I G++ + + L P
Sbjct: 362 LVSQNADSNQQGVAQGIITGIRGLCNGLGP 391
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Bos taurus (taxid: 9913) |
| >sp|Q8CIA9|HIAL1_MOUSE Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 55/322 (17%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEF----- 107
++GL Q V G+ + PL+G L+D +GRKP LL TV T P L+ N F
Sbjct: 83 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRINPWWYFGMISV 142
Query: 108 ----------VYAYYV------LRTISY----------IISQGSIFC-IAVAYAVSIALL 140
++AY R+ +Y ++S +I ++ Y S+ +L
Sbjct: 143 SGVFSVTFSVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSANYGDSLVVL 202
Query: 141 IFVPVYMQ---FFLVETVESAPRKDQESS-GLK---KAVNVLDRRYKSMRDAALMVVSSP 193
+ V + F L+ ES K + +S G + K + K +D+ +++
Sbjct: 203 VATLVALLDICFILIAVPESLSEKIRPASWGAQISWKQADPFASLKKVGKDSTVLL---- 258
Query: 194 TLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLL 253
I F L +G + YL+ V GF + + MVGI SIV+Q + L L
Sbjct: 259 ----ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAMVGILSIVAQTVFLSKL 314
Query: 254 -----NPFVALLA---SIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGL 305
N LL + +YG +W+ + + + + + P+ A+IS+ +
Sbjct: 315 MRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPAVSALISRNAES 374
Query: 306 NNQGKAQGFIAGVQSISSLLSP 327
+ QG AQG + G++ + + L P
Sbjct: 375 DQQGVAQGIVTGIRGLCNGLGP 396
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Mus musculus (taxid: 10090) |
| >sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 136/327 (41%), Gaps = 65/327 (19%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEF----- 107
++GL Q V G+ + PL+G L+D +GRK LL+TV T P L+ + F
Sbjct: 73 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISV 132
Query: 108 ----------VYAYYV------LRTISY-IISQ----------------GSIF--CIAVA 132
V+AY R+++Y ++S G ++ + V
Sbjct: 133 SGVFAVTFSVVFAYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVV 192
Query: 133 YAVSIALLIFVPVYMQFFLVETVESAPRKDQESSGLK----KAVNVLDRRYKSMRDAALM 188
A +IALL F LV ES P K + +S + + K +D+ ++
Sbjct: 193 LATAIALLDIC-----FILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQDSIVL 247
Query: 189 VVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQIL 248
+ I F L +G + YL+ + F+ + + ++GI SI++Q +
Sbjct: 248 L--------ICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTI 299
Query: 249 VLPLLNPFVALLASIAYAL--------FYGLAWASWVPYLSASFGVIYVLVKPSTYAIIS 300
VL LL + +I L +YG W+ + + + + + P+ A++S
Sbjct: 300 VLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVS 359
Query: 301 KASGLNNQGKAQGFIAGVQSISSLLSP 327
+ + + QG QG I G++ + + L P
Sbjct: 360 RTADADQQGVVQGMITGIRGLCNGLGP 386
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Mus musculus (taxid: 10090) |
| >sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=HIAT1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 136/327 (41%), Gaps = 65/327 (19%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEF----- 107
++GL Q V G+ + PL+G L+D +GRK LL+TV T P L+ + F
Sbjct: 73 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISV 132
Query: 108 ----------VYAYYV------LRTISY-IISQ----------------GSIF--CIAVA 132
V+AY R+++Y ++S G ++ + V
Sbjct: 133 SGVFAVTFSVVFAYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVV 192
Query: 133 YAVSIALLIFVPVYMQFFLVETVESAPRKDQESSGLK----KAVNVLDRRYKSMRDAALM 188
A +IALL F LV ES P K + +S + + K +D+ ++
Sbjct: 193 LATAIALLDIC-----FILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQDSIVL 247
Query: 189 VVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQIL 248
+ I F L +G + YL+ + F+ + + ++GI SI++Q +
Sbjct: 248 L--------ICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTI 299
Query: 249 VLPLLNPFVALLASIAYAL--------FYGLAWASWVPYLSASFGVIYVLVKPSTYAIIS 300
VL LL + +I L +YG W+ + + + + + P+ A++S
Sbjct: 300 VLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVS 359
Query: 301 KASGLNNQGKAQGFIAGVQSISSLLSP 327
+ + + QG QG I G++ + + L P
Sbjct: 360 RTADADQQGVVQGMITGIRGLCNGLGP 386
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Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | ||||||
| 255568024 | 443 | Hippocampus abundant transcript 1 protei | 0.992 | 0.873 | 0.707 | 1e-163 | |
| 357442989 | 441 | Hippocampus abundant transcript-like pro | 0.994 | 0.879 | 0.649 | 1e-156 | |
| 357442987 | 442 | Hippocampus abundant transcript-like pro | 0.994 | 0.877 | 0.623 | 1e-149 | |
| 388504394 | 442 | unknown [Medicago truncatula] | 0.994 | 0.877 | 0.621 | 1e-149 | |
| 449446460 | 444 | PREDICTED: hippocampus abundant transcri | 0.987 | 0.867 | 0.605 | 1e-146 | |
| 449525958 | 444 | PREDICTED: hippocampus abundant transcri | 0.987 | 0.867 | 0.603 | 1e-145 | |
| 224097628 | 413 | predicted protein [Populus trichocarpa] | 0.933 | 0.881 | 0.673 | 1e-145 | |
| 356533921 | 442 | PREDICTED: hippocampus abundant transcri | 0.951 | 0.839 | 0.646 | 1e-145 | |
| 225464128 | 435 | PREDICTED: uncharacterized LOC100260232 | 0.943 | 0.845 | 0.652 | 1e-144 | |
| 255568022 | 442 | Hippocampus abundant transcript 1 protei | 0.905 | 0.798 | 0.661 | 1e-142 |
| >gi|255568024|ref|XP_002524989.1| Hippocampus abundant transcript 1 protein, putative [Ricinus communis] gi|223535733|gb|EEF37396.1| Hippocampus abundant transcript 1 protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 309/437 (70%), Positives = 345/437 (78%), Gaps = 50/437 (11%)
Query: 3 SGFWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVG 62
SGF ELRPL+HLLLPL VHWVAE MTVSVLVDVVT ALCPGQ TC++AIYISGLQQ VVG
Sbjct: 8 SGFRELRPLVHLLLPLSVHWVAEQMTVSVLVDVVTAALCPGQSTCAQAIYISGLQQVVVG 67
Query: 63 VFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIIS 122
+FKMVVLPLLGQLADEYGRKP LL+TVST+I PF LLA++QS+ FVYAYYVLRTISYI+S
Sbjct: 68 IFKMVVLPLLGQLADEYGRKPFLLLTVSTSIFPFALLAYDQSRGFVYAYYVLRTISYILS 127
Query: 123 QGSIFCIAVAYA-----------------------------------------VSIALLI 141
QGSIFCI+VAYA VSIALLI
Sbjct: 128 QGSIFCISVAYAADFVQEDKRAAVFSWMTGLFSASHVLGNILARFLPEKYIFLVSIALLI 187
Query: 142 FVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFV 201
F P+YMQFFLVETVE A RKDQ S+ L K + V RYKSMRDAA++V SSPTLRGISFV
Sbjct: 188 FGPIYMQFFLVETVERAQRKDQNSTFLTKIIKVFHTRYKSMRDAAIIVFSSPTLRGISFV 247
Query: 202 SFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPF----- 256
SFFY+LGMSGI+AVLLFYLK+VFGFNKNQ+SEIL+MVGIG I SQIL+LPL+NP
Sbjct: 248 SFFYELGMSGINAVLLFYLKSVFGFNKNQYSEILLMVGIGEIFSQILLLPLVNPLVGEKV 307
Query: 257 ---VALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQG 313
+ALLASIAYA FYGLAWASWVPYLSASFG I+VLV PSTYAIISKAS NQGKAQG
Sbjct: 308 ILCLALLASIAYAFFYGLAWASWVPYLSASFGAIFVLVTPSTYAIISKASSSMNQGKAQG 367
Query: 314 FIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEEN 373
F+AGVQSI+SLLSPLAMSPLTSWFLS++APF+CKGFSIIVAS+C+MV+ ACML E+
Sbjct: 368 FVAGVQSIASLLSPLAMSPLTSWFLSSNAPFDCKGFSIIVASLCMMVAFCYACMLKPEQE 427
Query: 374 STNDEREDIEEPLISHT 390
+ N E EDIE PLI+
Sbjct: 428 TKNLE-EDIEAPLITDN 443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442989|ref|XP_003591772.1| Hippocampus abundant transcript-like protein [Medicago truncatula] gi|355480820|gb|AES62023.1| Hippocampus abundant transcript-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 284/437 (64%), Positives = 335/437 (76%), Gaps = 49/437 (11%)
Query: 3 SGFWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVG 62
SGF+ELRPL HLLLPL +HW+AE MTVSVLVDV T ALCP Q +CS+AIYI+GLQ+T+ G
Sbjct: 5 SGFFELRPLFHLLLPLSIHWIAEEMTVSVLVDVTTTALCPQQSSCSKAIYINGLQETIAG 64
Query: 63 VFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIIS 122
+FKM+VLPLLGQL+D++GRKP LL+T+STTI PF LLA+NQS+EFVYAYYVLRTISYIIS
Sbjct: 65 IFKMMVLPLLGQLSDDHGRKPFLLLTMSTTIFPFALLAWNQSEEFVYAYYVLRTISYIIS 124
Query: 123 QGSIFCIAVAYA-----------------------------------------VSIALLI 141
+GSIFCI+VAY VSIALLI
Sbjct: 125 KGSIFCISVAYVADVVNENKRAAVFGWITGLFSASHVVGNVLARFLPQNYIFVVSIALLI 184
Query: 142 FVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFV 201
F PVYMQFFLVETV+ APRK+QE K V+ RRYKSMR+AA +V+ SP LRG++ V
Sbjct: 185 FCPVYMQFFLVETVKLAPRKNQELGFCSKVSYVVSRRYKSMRNAAEIVIFSPALRGMALV 244
Query: 202 SFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFV---- 257
SFFY+LGMSGI+ VLL+YLKAVFGFNKNQFSE+LMMVGIGSI SQI++LP+LNP V
Sbjct: 245 SFFYELGMSGITTVLLYYLKAVFGFNKNQFSELLMMVGIGSIFSQIVLLPILNPLVGEKV 304
Query: 258 ----ALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQG 313
ALLASIAYA GLAWA WVPYLSASFG+IYVLVKP+TYAIIS+AS NQGKAQ
Sbjct: 305 ILCSALLASIAYAWLSGLAWAPWVPYLSASFGIIYVLVKPATYAIISRASSSTNQGKAQT 364
Query: 314 FIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEEN 373
FIAG QSIS LLSP+ MSPLTS FLS+DAPF CKGFSI+ AS+C+M+SL ACML+
Sbjct: 365 FIAGAQSISDLLSPIVMSPLTSLFLSSDAPFECKGFSILCASVCMMISLIFACMLNPNTP 424
Query: 374 STNDEREDIEEPLISHT 390
S+ D ++IE+PL++H+
Sbjct: 425 SSYDLEDNIEDPLLNHS 441
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442987|ref|XP_003591771.1| Hippocampus abundant transcript-like protein [Medicago truncatula] gi|355480819|gb|AES62022.1| Hippocampus abundant transcript-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 273/438 (62%), Positives = 327/438 (74%), Gaps = 50/438 (11%)
Query: 3 SGFWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVG 62
SGF+EL+PL HLLLPL +HW+AEAMTVSVLVDV T ALCP Q +CS+AIYI+GLQQT+ G
Sbjct: 5 SGFFELKPLFHLLLPLSIHWIAEAMTVSVLVDVTTTALCPQQSSCSKAIYINGLQQTITG 64
Query: 63 VFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIIS 122
+FKM VLPLLGQL+DE+GRKPLLL+T+ST+I+PF LLA+NQS+EFVYAYYVLRT S+IIS
Sbjct: 65 IFKMAVLPLLGQLSDEHGRKPLLLLTISTSIIPFALLAWNQSKEFVYAYYVLRTFSHIIS 124
Query: 123 QGSIFCIAVAYA-----------------------------------------VSIALLI 141
QGSIFCI+VAY VSI LL
Sbjct: 125 QGSIFCISVAYVADVVHESKRVAVFSWITGLSSAAHVIANVFARFLPQNYIFVVSITLLT 184
Query: 142 FVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFV 201
F P+YM FFLVETV+ P K+QE + + VL RRYKSMR+AA +V+ SPTLRG++ V
Sbjct: 185 FCPLYMHFFLVETVKLDPGKNQELGFCTRVIYVLSRRYKSMRNAAEIVIFSPTLRGVALV 244
Query: 202 SFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFV---- 257
SFFYKLGM+GI +VLL+YLKAVFGFNKNQFSE+LMMVGIGSI SQI++LP+LNP V
Sbjct: 245 SFFYKLGMTGIHSVLLYYLKAVFGFNKNQFSELLMMVGIGSIFSQIVLLPILNPLVGEKV 304
Query: 258 ----ALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQG 313
ALLASIAYA GLAWA WVPYL SFG+IY+L KP+TY IISKAS NQGKAQ
Sbjct: 305 ILCSALLASIAYAWLSGLAWAPWVPYLGGSFGIIYILEKPATYGIISKASSSTNQGKAQT 364
Query: 314 FIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEEN 373
FIAG SIS LLSP+ MSPLTS FLS+DAPF CKGFSII AS+C+++SL ACML+
Sbjct: 365 FIAGANSISGLLSPIVMSPLTSLFLSSDAPFECKGFSIICASVCMIISLIFACMLNPNTG 424
Query: 374 STNDERE-DIEEPLISHT 390
S +D+ E + ++PL+++
Sbjct: 425 SRDDDLEGNQQDPLLNYN 442
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388504394|gb|AFK40263.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 272/438 (62%), Positives = 327/438 (74%), Gaps = 50/438 (11%)
Query: 3 SGFWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVG 62
SGF+EL+PL HLLLPL +HW+AEAMTVSVLVDV T ALCP Q +CS+AIYI+G+QQT+ G
Sbjct: 5 SGFFELKPLFHLLLPLSIHWIAEAMTVSVLVDVTTTALCPQQSSCSKAIYINGVQQTITG 64
Query: 63 VFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIIS 122
+FKM VLPLLGQL+DE+GRKPLLL+T+ST+I+PF LLA+NQS+EFVYAYYVLRT S+IIS
Sbjct: 65 IFKMAVLPLLGQLSDEHGRKPLLLLTISTSIIPFALLAWNQSKEFVYAYYVLRTFSHIIS 124
Query: 123 QGSIFCIAVAYA-----------------------------------------VSIALLI 141
QGSIFCI+VAY VSI LL
Sbjct: 125 QGSIFCISVAYVADVVHESKRVAVFSWITGLSSAAHVIANVFARFLPQNYIFVVSITLLT 184
Query: 142 FVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFV 201
F P+YM FFLVETV+ P K+QE + + VL RRYKSMR+AA +V+ SPTLRG++ V
Sbjct: 185 FCPLYMHFFLVETVKLDPGKNQELGFCTRVIYVLSRRYKSMRNAAEIVIFSPTLRGVALV 244
Query: 202 SFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFV---- 257
SFFYKLGM+GI +VLL+YLKAVFGFNKNQFSE+LMMVGIGSI SQI++LP+LNP V
Sbjct: 245 SFFYKLGMTGIHSVLLYYLKAVFGFNKNQFSELLMMVGIGSIFSQIVLLPILNPLVGEKV 304
Query: 258 ----ALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQG 313
ALLASIAYA GLAWA WVPYL SFG+IY+L KP+TY IISKAS NQGKAQ
Sbjct: 305 ILCSALLASIAYAWLSGLAWAPWVPYLGGSFGIIYILEKPATYGIISKASSSTNQGKAQT 364
Query: 314 FIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEEN 373
FIAG SIS LLSP+ MSPLTS FLS+DAPF CKGFSII AS+C+++SL ACML+
Sbjct: 365 FIAGANSISGLLSPIVMSPLTSLFLSSDAPFECKGFSIICASVCMIISLIFACMLNPNTG 424
Query: 374 STNDERE-DIEEPLISHT 390
S +D+ E + ++PL+++
Sbjct: 425 SRDDDLEGNQQDPLLNYN 442
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446460|ref|XP_004140989.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/434 (60%), Positives = 326/434 (75%), Gaps = 49/434 (11%)
Query: 4 GFWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGV 63
GF ELRPL+HLLLPLCVHW+AE MTVSVLVDV+TNALC TC +AIY +G +QT+VG+
Sbjct: 9 GFEELRPLIHLLLPLCVHWIAEEMTVSVLVDVITNALCSQNTTCPQAIYFNGTEQTIVGI 68
Query: 64 FKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQ 123
FKMVVLPLLGQLADEYGRKPLLL+TVST+I PF LL ++QS+ ++YAYYVLRTIS I+SQ
Sbjct: 69 FKMVVLPLLGQLADEYGRKPLLLLTVSTSIFPFALLVWDQSKGYIYAYYVLRTISKILSQ 128
Query: 124 GSIFCIAVAYA-----------------------------------------VSIALLIF 142
GSIF I+VAYA VSI LL+F
Sbjct: 129 GSIFFISVAYAADTVQESRRAAVFGWITGLSSASHVVGNLLARFLPEKYIFVVSIVLLMF 188
Query: 143 VPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVS 202
P+YM FFL ETV+ P+ D+E + L K VNVL+RR+++MRDA +V+ +PTLR I++VS
Sbjct: 189 CPIYMYFFLHETVKPIPKNDEEPNWLSKTVNVLNRRFRTMRDAIEIVIDNPTLRSITYVS 248
Query: 203 FFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFVA---- 258
FF LGM+GI+ VL+FYLKAVFGF+KNQ SEILM+VGIGSI +Q+LVLPL+NP +
Sbjct: 249 FFLNLGMTGITNVLMFYLKAVFGFDKNQNSEILMLVGIGSIFTQMLVLPLINPLIGEEAI 308
Query: 259 ----LLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGF 314
+LAS+AYALFYGLAWA+WV YL+ASF VIYVL +P+ YAI+SKAS +NQGKAQGF
Sbjct: 309 LCLGILASVAYALFYGLAWAAWVAYLAASFKVIYVLARPAIYAIVSKASSSSNQGKAQGF 368
Query: 315 IAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEENS 374
+AGV+SI+S LSPL MSPLTSWF+S+DAPF+CKGFSI+ ASICL++SL C L +
Sbjct: 369 VAGVESIASFLSPLVMSPLTSWFISSDAPFDCKGFSIVCASICLVISLWHGCCLLKAKEH 428
Query: 375 TNDEREDIEEPLIS 388
+ E +D EEPL++
Sbjct: 429 GSKEDDDPEEPLLN 442
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449525958|ref|XP_004169983.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 262/434 (60%), Positives = 325/434 (74%), Gaps = 49/434 (11%)
Query: 4 GFWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGV 63
GF ELRPL+HLLLPLCVHW+AE MTVSVLVDV+TNALC TC +AIY +G +QT+VG+
Sbjct: 9 GFEELRPLIHLLLPLCVHWIAEEMTVSVLVDVITNALCSQNTTCPQAIYFNGTEQTIVGI 68
Query: 64 FKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQ 123
FKMVVLPLLGQLADEYGRKPLLL+TVST+I PF LL ++QS+ ++YAYYVLRTIS I+SQ
Sbjct: 69 FKMVVLPLLGQLADEYGRKPLLLLTVSTSIFPFALLVWDQSKGYIYAYYVLRTISKILSQ 128
Query: 124 GSIFCIAVAYA-----------------------------------------VSIALLIF 142
GSIF I+VAYA VSI LL+F
Sbjct: 129 GSIFFISVAYAADTVQESRRAAVFGWITGLSSASHVVGNLLARFLPEKYIFVVSIVLLMF 188
Query: 143 VPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVS 202
P+YM FFL ETV+ + D+E + L K VNVL+RR+++MRDA +V+ +PTLR I++VS
Sbjct: 189 CPIYMYFFLHETVKPILKNDEEPNWLSKTVNVLNRRFRTMRDAIEIVIDNPTLRSITYVS 248
Query: 203 FFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFVA---- 258
FF LGM+GI+ VL+FYLKAVFGF+KNQ SEILM+VGIGSI +Q+LVLPL+NP +
Sbjct: 249 FFLNLGMTGITNVLMFYLKAVFGFDKNQNSEILMLVGIGSIFTQMLVLPLINPLIGEEAI 308
Query: 259 ----LLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGF 314
+LAS+AYALFYGLAWA+WV YL+ASF VIYVL +P+ YAI+SKAS +NQGKAQGF
Sbjct: 309 LCLGILASVAYALFYGLAWAAWVAYLAASFKVIYVLARPAIYAIVSKASSSSNQGKAQGF 368
Query: 315 IAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEENS 374
+AGV+SI+S LSPL MSPLTSWF+S+DAPF+CKGFSI+ ASICL++SL C L +
Sbjct: 369 VAGVESIASFLSPLVMSPLTSWFISSDAPFDCKGFSIVCASICLVISLWHGCCLLKAKEH 428
Query: 375 TNDEREDIEEPLIS 388
+ E +D EEPL++
Sbjct: 429 GSKEDDDPEEPLLN 442
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097628|ref|XP_002311018.1| predicted protein [Populus trichocarpa] gi|222850838|gb|EEE88385.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 278/413 (67%), Positives = 319/413 (77%), Gaps = 49/413 (11%)
Query: 27 MTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLL 86
MTVSVLVDVVT+ALCPGQ TCSEAIYISGLQQTVVG+FKMVVLPLLGQLADEYGRKPLLL
Sbjct: 1 MTVSVLVDVVTSALCPGQTTCSEAIYISGLQQTVVGIFKMVVLPLLGQLADEYGRKPLLL 60
Query: 87 ITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------ 134
ITVST+I PF +LA+NQS+ VY YYVLRTIS+IISQGSIFCIAVAYA
Sbjct: 61 ITVSTSIFPFAVLAWNQSRGSVYVYYVLRTISFIISQGSIFCIAVAYAADIIEEGNRAAA 120
Query: 135 -----------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQES 165
VSIA LIF PVYM F L ETVE P++D++S
Sbjct: 121 FSWITGFFSASHVLGNLLARFLPEQYIFVVSIAFLIFSPVYMHFLLAETVEQVPKRDRDS 180
Query: 166 SGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFG 225
+ L + +NV +RY+SMRDAA +V SPTLRGISFVSFFY+LGMSGIS+VLLFYLKAVFG
Sbjct: 181 TFLTRIINVAHKRYESMRDAAAVVFKSPTLRGISFVSFFYELGMSGISSVLLFYLKAVFG 240
Query: 226 FNKNQFSEILMMVGIGSIVSQILVLPLLNPF--------VALLASIAYALFYGLAWASWV 277
FNKNQ+SEIL MVGIG+I SQILVLPLLNP +A+LASIAY L YGLAWASWV
Sbjct: 241 FNKNQYSEILSMVGIGAIFSQILVLPLLNPLVGDGGILSLAILASIAYGLLYGLAWASWV 300
Query: 278 PYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337
PYLSASFG IY+LVKP+TYAIISK SG NQGK QGF+AGVQSI+S LSPLAMSPLTSWF
Sbjct: 301 PYLSASFGAIYILVKPATYAIISKGSGSMNQGKTQGFVAGVQSIASFLSPLAMSPLTSWF 360
Query: 338 LSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEENSTNDEREDIEEPLISHT 390
LS+ APF+CKGFSIIVAS+ +M++L AC+L +E ++D ++IE PL+ +
Sbjct: 361 LSSTAPFDCKGFSIIVASVSMMIALCFACLLKPDEKLSHDPEDEIEAPLLRES 413
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533921|ref|XP_003535506.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 272/421 (64%), Positives = 317/421 (75%), Gaps = 50/421 (11%)
Query: 20 VHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEY 79
+HWVAE MTVSVLVDV T+ALCPG+ TCS+AIYI+G+QQT+VG+FKMVVLPLLGQL+DEY
Sbjct: 22 IHWVAEEMTVSVLVDVTTSALCPGESTCSKAIYINGVQQTIVGIFKMVVLPLLGQLSDEY 81
Query: 80 GRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA----- 134
GRKPLLLIT+ST I PF LL ++QS+E+VYAYYVLRTIS IISQGSIFCI+VAYA
Sbjct: 82 GRKPLLLITISTAIFPFVLLVWHQSEEYVYAYYVLRTISNIISQGSIFCISVAYAADVVN 141
Query: 135 ------------------------------------VSIALLIFVPVYMQFFLVETVESA 158
VSI LL PVYM+FFLVETV A
Sbjct: 142 ESKRAAVFGWITGLLSASHVLGDVLAWSLPEKYIFAVSIVLLTSCPVYMKFFLVETVIPA 201
Query: 159 PRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLF 218
P+ D+ES K V+V +RY SMR AA +V+ SPTLRG++ VSFFY+LGMSGIS+VLL+
Sbjct: 202 PKNDRESGCWAKIVDVPRQRYISMRRAAEIVIFSPTLRGMALVSFFYELGMSGISSVLLY 261
Query: 219 YLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFV--------ALLASIAYALFYG 270
YLKAVFGFNKNQFSE+LMMVGIGSI SQ+L+LP+LNP V ALLASIAYA YG
Sbjct: 262 YLKAVFGFNKNQFSELLMMVGIGSIFSQMLLLPILNPLVGEKVILCSALLASIAYAWLYG 321
Query: 271 LAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAM 330
LAWA WVPYLSASFG+IYVLVKP+TYAIIS AS NQGKAQ FIAG QSIS LLSP+AM
Sbjct: 322 LAWAPWVPYLSASFGIIYVLVKPATYAIISNASSSTNQGKAQTFIAGTQSISDLLSPIAM 381
Query: 331 SPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLD-TEENSTNDEREDIEEPLISH 389
SPLTSWFLS++APF CKGFSII ASIC+++SL AC+L + +S+ND E PL++
Sbjct: 382 SPLTSWFLSSNAPFECKGFSIICASICMIISLCFACLLKPADTSSSNDIEGSQETPLLTD 441
Query: 390 T 390
Sbjct: 442 N 442
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464128|ref|XP_002266084.1| PREDICTED: uncharacterized LOC100260232 [Vitis vinifera] gi|296087966|emb|CBI35249.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 274/420 (65%), Positives = 319/420 (75%), Gaps = 52/420 (12%)
Query: 21 HWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYG 80
HW+AE MTVSVLVDV T ALC G TC+E IYI+GLQQTVVG+FKMVVLP+LGQLADEYG
Sbjct: 16 HWIAEEMTVSVLVDVTTAALCSGASTCAEVIYINGLQQTVVGIFKMVVLPVLGQLADEYG 75
Query: 81 RKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------ 134
RKPLL++TVST+I PF +LA+N+S+ FVYAYYVLRT+SYI+SQGSIFCI+VAY
Sbjct: 76 RKPLLMVTVSTSIFPFAVLAWNKSKGFVYAYYVLRTVSYILSQGSIFCISVAYVADVVED 135
Query: 135 -----------------------------------VSIALLIFVPVYMQFFLVETVESAP 159
VSIALLIF PVYMQ FLVETV AP
Sbjct: 136 SKRAAAFSWITGIFSASHVLGNVLARFLPEKYIFEVSIALLIFGPVYMQLFLVETVRRAP 195
Query: 160 RKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFY 219
R+DQ S+G K VL R SM+ AA +V+SSPTL+GIS +SFFY+LGMSGIS VLL+Y
Sbjct: 196 RQDQHSTGCTKIFKVLQERCLSMKHAATLVLSSPTLKGISIISFFYELGMSGISGVLLYY 255
Query: 220 LKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFV--------ALLASIAYALFYGL 271
LKA FGFNKNQ SEILMMVGIGSI SQ+L+LPL+NP V ALLASIAYALFYGL
Sbjct: 256 LKAAFGFNKNQLSEILMMVGIGSIFSQMLILPLINPLVGEKLILCTALLASIAYALFYGL 315
Query: 272 AWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMS 331
AWASWVPYLSASFGV+YVLVKPSTYAIISKAS +NQGKAQGFIAG+QS++SLLSPLAMS
Sbjct: 316 AWASWVPYLSASFGVVYVLVKPSTYAIISKASSSSNQGKAQGFIAGIQSVASLLSPLAMS 375
Query: 332 PLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEE---NSTNDEREDIEEPLIS 388
PLTSWFLS++APF CKGFSI+ AS+C+M++L A L +E + N+ +D+E L+S
Sbjct: 376 PLTSWFLSSNAPFKCKGFSIVCASLCMMIALCYAVFLKQDEPANDELNNNIDDMEAALLS 435
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568022|ref|XP_002524988.1| Hippocampus abundant transcript 1 protein, putative [Ricinus communis] gi|223535732|gb|EEF37395.1| Hippocampus abundant transcript 1 protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 266/402 (66%), Positives = 306/402 (76%), Gaps = 49/402 (12%)
Query: 20 VHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEY 79
VHWVAE MT+SVLVDV+T+ALCPG TCS+AIY+SGLQQTVVG+FKMVVLPLLGQLADE+
Sbjct: 25 VHWVAEEMTLSVLVDVITDALCPGDSTCSQAIYLSGLQQTVVGIFKMVVLPLLGQLADEH 84
Query: 80 GRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA----- 134
GRKP LL+T+ST+I+PF +L +NQS+ FVYAYYVL TISYI+SQGSIFCIAVAYA
Sbjct: 85 GRKPFLLLTISTSIIPFAVLVWNQSKGFVYAYYVLHTISYILSQGSIFCIAVAYAADFVK 144
Query: 135 ------------------------------------VSIALLIFVPVYMQFFLVETVESA 158
VS+ALLI P+YMQFFLVET++ A
Sbjct: 145 EGKRVAAFSWITGLFSASHLLGNVLARLLPEKYIFMVSVALLICCPLYMQFFLVETIQPA 204
Query: 159 PRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLF 218
R+DQ+S+ L K + VL RYKSM+DAA +V SS TLRGISFVSFFY+LGMSGIS VL +
Sbjct: 205 QRRDQDSTFLTKTIKVLHTRYKSMKDAATIVFSSHTLRGISFVSFFYELGMSGISTVLFY 264
Query: 219 YLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFV--------ALLASIAYALFYG 270
YLKA FGF+KNQ+SEIL MV IG I SQILVLPL+NP V LLASIAYAL YG
Sbjct: 265 YLKAAFGFSKNQYSEILSMVEIGEIFSQILVLPLINPLVGEKVILCIGLLASIAYALLYG 324
Query: 271 LAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAM 330
LAWA WV YLSASFG I VLVKPSTYAIISKAS NQGKAQGF+AGVQ+I+SLLSPLA
Sbjct: 325 LAWAPWVAYLSASFGAIDVLVKPSTYAIISKASSSTNQGKAQGFVAGVQAIASLLSPLAT 384
Query: 331 SPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEE 372
SPLTSWFLS++APFNCKGFSIIVAS+C+++ S L T+
Sbjct: 385 SPLTSWFLSSNAPFNCKGFSIIVASLCMLIKGSVNIYLMTDN 426
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | ||||||
| TAIR|locus:2039430 | 446 | MEE15 "maternal effect embryo | 0.520 | 0.455 | 0.316 | 4.2e-46 | |
| TAIR|locus:2039440 | 461 | AT2G16980 [Arabidopsis thalian | 0.476 | 0.403 | 0.338 | 1.3e-45 | |
| TAIR|locus:2039450 | 456 | AT2G16990 "AT2G16990" [Arabido | 0.474 | 0.405 | 0.324 | 1.4e-44 | |
| TAIR|locus:2157592 | 282 | AT5G42210 "AT5G42210" [Arabido | 0.502 | 0.695 | 0.328 | 7.3e-27 | |
| UNIPROTKB|I3LSQ8 | 496 | HIATL1 "Uncharacterized protei | 0.476 | 0.375 | 0.246 | 3.3e-12 | |
| UNIPROTKB|E1C047 | 431 | E1C047 "Uncharacterized protei | 0.458 | 0.415 | 0.257 | 4.7e-12 | |
| UNIPROTKB|F1PC94 | 418 | HIAT1 "Uncharacterized protein | 0.458 | 0.428 | 0.252 | 4.5e-11 | |
| UNIPROTKB|F1S559 | 462 | LOC100622510 "Uncharacterized | 0.458 | 0.387 | 0.252 | 6.2e-11 | |
| ZFIN|ZDB-GENE-030131-834 | 493 | hiat1a "hippocampus abundant t | 0.464 | 0.367 | 0.275 | 6.3e-11 | |
| UNIPROTKB|A6QLP5 | 490 | HIAT1 "Uncharacterized protein | 0.458 | 0.365 | 0.252 | 7.4e-11 |
| TAIR|locus:2039430 MEE15 "maternal effect embryo arrest 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 283 (104.7 bits), Expect = 4.2e-46, Sum P(3) = 4.2e-46
Identities = 67/212 (31%), Positives = 105/212 (49%)
Query: 174 VLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSE 233
VL+ +Y S++D ++ +S L V+FF SG+ + L++LKA FGFNKN F+E
Sbjct: 224 VLNTKYSSLKDMVSLIKNSTILVQTLVVTFFATFAQSGMQSAFLYFLKARFGFNKNDFAE 283
Query: 234 ILMMVGIGSIVSQILVLPLLNPFVA--------LLASIAYALFYGLAWASWVPYLSASFG 285
++++V I +SQ+ +LP L + LL A ++W++WVPY +
Sbjct: 284 LILLVTIIGSISQLFILPKLVSAIGERRVLSTGLLMDSVNAACLSVSWSAWVPYATTVLV 343
Query: 286 VIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQXXXXXXXXXXXXXXXXWFLSTDAPFN 345
+ + V PS I S+ G QGK QG I+GV+ FLS APF
Sbjct: 344 PVTMFVMPSVCGIASRQVGPGEQGKVQGCISGVKSFSGVVAPFIYSPLTALFLSEKAPFY 403
Query: 346 CKGFSIIVASICLMVSLSCACML-DTEENSTN 376
GFS++ + LM+ + ++ D S N
Sbjct: 404 FPGFSLLCVTFSLMIGFFLSLLIRDVPSPSMN 435
|
|
| TAIR|locus:2039440 AT2G16980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 67/198 (33%), Positives = 101/198 (51%)
Query: 173 NVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFS 232
+V + +Y S +D ++ +S L V+FF SG + L+++LKA FGFNKN F+
Sbjct: 237 HVFNSKYSSWKDMVSLINNSTILIQALVVTFFATFSESGRGSALMYFLKARFGFNKNDFA 296
Query: 233 EILMMVGIGSIVSQILVLPLLNPFVA--------LLASIAYALFYGLAWASWVPYLSASF 284
E+ ++V I +SQ+ +LP L+ + LL A +AW+ WVPY
Sbjct: 297 ELFLLVTIIGSISQLFILPTLSSTIGERKVLSTGLLMEFFNATCLSVAWSPWVPYAMTML 356
Query: 285 --GVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQXXXXXXXXXXXXXXXXWFLSTDA 342
G ++V+ PS I S+ G + QGK QG I+GV+ FLS +A
Sbjct: 357 VPGAMFVM--PSVCGIASRQVGSSEQGKVQGCISGVRAFAQVVAPFVYSPLTALFLSENA 414
Query: 343 PFNCKGFSIIVASICLMV 360
PF GFSI+ +I LM+
Sbjct: 415 PFYFPGFSILCIAISLMI 432
|
|
| TAIR|locus:2039450 AT2G16990 "AT2G16990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 64/197 (32%), Positives = 103/197 (52%)
Query: 174 VLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSE 233
V ++Y S++D ++ +S V+FF SG+ + L++LKA FGF+K QF++
Sbjct: 234 VFHKKYSSLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFAD 293
Query: 234 ILMMVGIGSIVSQILVLPLLNPFVA---LLASIAYALFYGLA-----WASWVPYLSASF- 284
+L+++ I +SQ+ VLP + LL++ + F +A WA WVPYL+ F
Sbjct: 294 LLLLITIVGSISQLFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWVPYLTTVFV 353
Query: 285 -GVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQXXXXXXXXXXXXXXXXWFLSTDAP 343
G ++V+ PS I S+ G QGK QG I+GV+ FLS +AP
Sbjct: 354 PGALFVM--PSVCGIASRQVGPGEQGKVQGCISGVRSFGKVVAPFVFSPLTALFLSKNAP 411
Query: 344 FNCKGFSIIVASICLMV 360
F GFS++ S+ ++
Sbjct: 412 FYFPGFSLLCISLSSLI 428
|
|
| TAIR|locus:2157592 AT5G42210 "AT5G42210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 67/204 (32%), Positives = 110/204 (53%)
Query: 173 NVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFS 232
N + R + + + A ++ SS L ++ VSFF L +G+ A ++YLKA F FNK+QF+
Sbjct: 67 NRIFRAIRLVHEMASLMRSSVPLFQVAMVSFFSSLAEAGLHASSMYYLKAKFHFNKDQFA 126
Query: 233 EILMMVGIGSIVSQILVLPLLNPFVALLASIAYALFYG--------LAWASWVPYLSASF 284
+++++VG +SQ+L +P+L P + ++ LF+G +AW+SWVPY++A F
Sbjct: 127 DLMIIVGASGSISQLLFMPVLVPALKEERLLSIGLFFGCAHMFLLCVAWSSWVPYMAAIF 186
Query: 285 GVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQXXXXXXXXXXXXXXXXWFLSTDAPF 344
+ + +I+SK QGKAQG I+ + WFLS APF
Sbjct: 187 ALFSIFPSSCMRSIVSKQVASYEQGKAQGIISSICSLANVISPLAFSPLTDWFLSERAPF 246
Query: 345 NCKGFSIIVASICLMVSLSCACML 368
N GFSI+ A + ++ + M+
Sbjct: 247 NFPGFSIMCAGFAMTIAFIQSLMI 270
|
|
| UNIPROTKB|I3LSQ8 HIATL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 133 (51.9 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 50/203 (24%), Positives = 92/203 (45%)
Query: 129 IAVAYAVSIALLIFVPVYMQ---FFLVETVESAPRKDQESS-GLKKAVNVLDRRYKSMRD 184
++ +Y S+ +L+ V + F L+ ES P K + S G + D + S++
Sbjct: 153 LSASYGDSLVVLVATVVALLDICFILLAVPESLPEKMRPLSWGAHISWRQADP-FASLKK 211
Query: 185 AALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV 244
V T+ I F L +G + YL+ V GF + + + MVGI SIV
Sbjct: 212 ----VGKDSTVLLICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKITAFIAMVGILSIV 267
Query: 245 SQILVLPLLNPFVA----LLASIAYALF----YGLAWASWVPYLSASFGVIYVLVKPSTY 296
+Q + L +L + +L + + +F YG +W+ + + + + + P+
Sbjct: 268 AQTVFLSILMKSLGKKNTVLLGLGFQMFQLAWYGFGSQAWMMWAAGTVAAMSSITFPAVS 327
Query: 297 AIISKASGLNNQGKAQGFIAGVQ 319
A++S + + QG AQG I G++
Sbjct: 328 ALVSGNAESDQQGVAQGIITGIR 350
|
|
| UNIPROTKB|E1C047 E1C047 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 52/202 (25%), Positives = 93/202 (46%)
Query: 129 IAVAYAVSIALLIFVPVYMQFFLVETVESAPRKDQESS-GLKKAVNVLD--RRYKSMRDA 185
+ V A +IALL F LV ES P K + +S G + D K +
Sbjct: 130 LVVVLATAIALLDIC-----FILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQD 184
Query: 186 ALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVS 245
+++++ T+ F+S+ + G S+ L YL+ + GF+ + + ++GI SI++
Sbjct: 185 SIVLLICITV----FLSYLPEAGQ--YSSFFL-YLRQIMGFSSESVAAFIAVLGILSIIA 237
Query: 246 QILVLPLL-----NPFVALLA---SIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYA 297
Q +VL LL N LL I +YG W+ + + + + + P+ A
Sbjct: 238 QTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSA 297
Query: 298 IISKASGLNNQGKAQGFIAGVQ 319
++S+ + + QG QG I G++
Sbjct: 298 LVSRTADADQQGVVQGMITGIR 319
|
|
| UNIPROTKB|F1PC94 HIAT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 51/202 (25%), Positives = 92/202 (45%)
Query: 129 IAVAYAVSIALLIFVPVYMQFFLVETVESAPRKDQESS-GLKKAVNVLD--RRYKSMRDA 185
+ V A +IALL F LV ES P K + +S G + D K +
Sbjct: 117 LVVVLATAIALLDIC-----FILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQD 171
Query: 186 ALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVS 245
+++++ T+ F+S+ + G S+ L YL+ + F+ + + ++GI SI++
Sbjct: 172 SIVLLICITV----FLSYLPEAGQ--YSSFFL-YLRQIMKFSPESVAAFIAVLGILSIIA 224
Query: 246 QILVLPLL-----NPFVALLA---SIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYA 297
Q +VL LL N LL I +YG W+ + + + + + P+ A
Sbjct: 225 QTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSA 284
Query: 298 IISKASGLNNQGKAQGFIAGVQ 319
++S+ + + QG QG I G++
Sbjct: 285 LVSRTADADQQGVVQGMITGIR 306
|
|
| UNIPROTKB|F1S559 LOC100622510 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 51/202 (25%), Positives = 92/202 (45%)
Query: 129 IAVAYAVSIALLIFVPVYMQFFLVETVESAPRKDQESS-GLKKAVNVLD--RRYKSMRDA 185
+ V A +IALL F LV ES P K + +S G + D K +
Sbjct: 161 LVVVLATAIALLDIC-----FILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQD 215
Query: 186 ALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVS 245
+++++ T+ F+S+ + G S+ L YL+ + F+ + + ++GI SI++
Sbjct: 216 SIVLLICITV----FLSYLPEAGQ--YSSFFL-YLRQIMKFSPESVAAFIAVLGILSIIA 268
Query: 246 QILVLPLL-----NPFVALLA---SIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYA 297
Q +VL LL N LL I +YG W+ + + + + + P+ A
Sbjct: 269 QTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSA 328
Query: 298 IISKASGLNNQGKAQGFIAGVQ 319
++S+ + + QG QG I G++
Sbjct: 329 LVSRTADADQQGVVQGMITGIR 350
|
|
| ZFIN|ZDB-GENE-030131-834 hiat1a "hippocampus abundant transcript 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 133 (51.9 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 55/200 (27%), Positives = 87/200 (43%)
Query: 129 IAVAYAVSIALLIFVPVYMQFFLVETVESAPRKDQESS-GLKKAVNVLDRRYKSMRDAAL 187
+ V A +IALL F LV ES P K + +S G + D + S+R
Sbjct: 189 LVVILATAIALLDIC-----FILVAVPESLPEKMRPASWGAPISWEQADP-FASLRK--- 239
Query: 188 MVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQI 247
V T+ I F L +G + YL+ V GF + + +VGI SI++Q
Sbjct: 240 -VGQDSTVLLICITVFLSYLPEAGPYSSFFLYLRQVIGFTSETVAAFIAVVGILSILAQT 298
Query: 248 LVLPLL-----NPFVALLA---SIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAII 299
+VL +L N LL I +YG W+ + + + + + P+ AI+
Sbjct: 299 VVLGILMRSIGNKNTILLGLGFQILQLAWYGFGSQPWMMWAAGAVAAMSSITFPAISAIV 358
Query: 300 SKASGLNNQGKAQGFIAGVQ 319
S+ + + QG QG I G++
Sbjct: 359 SRNADPDQQGVVQGMITGIR 378
|
|
| UNIPROTKB|A6QLP5 HIAT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 51/202 (25%), Positives = 92/202 (45%)
Query: 129 IAVAYAVSIALLIFVPVYMQFFLVETVESAPRKDQESS-GLKKAVNVLD--RRYKSMRDA 185
+ V A +IALL F LV ES P K + +S G + D K +
Sbjct: 189 LVVVLATAIALLDIC-----FILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQD 243
Query: 186 ALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVS 245
+++++ T+ F+S+ + G S+ L YL+ + F+ + + ++GI SI++
Sbjct: 244 SIVLLICITV----FLSYLPEAGQ--YSSFFL-YLRQIMKFSPESVAAFIAVLGILSIIA 296
Query: 246 QILVLPLL-----NPFVALLA---SIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYA 297
Q +VL LL N LL I +YG W+ + + + + + P+ A
Sbjct: 297 QTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSA 356
Query: 298 IISKASGLNNQGKAQGFIAGVQ 319
++S+ + + QG QG I G++
Sbjct: 357 LVSRTADADQQGVVQGMITGIR 378
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 390 | |||
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-05 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 2e-04 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 9/154 (5%)
Query: 193 PTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPL 252
L ++ F G G+ L YL+ V G + + +L + G+G I+ +L L
Sbjct: 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLL 234
Query: 253 LN---------PFVALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKAS 303
+ LLA++ L + + G P+ + S+ +
Sbjct: 235 SDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA 294
Query: 304 GLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337
+G A G S+ L PL L
Sbjct: 295 PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG 328
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 7e-05
Identities = 51/325 (15%), Positives = 97/325 (29%), Gaps = 65/325 (20%)
Query: 55 GLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVL 114
GL T + + PL G+L+D +GR+ +LLI + + LL F S + VL
Sbjct: 35 GLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL 94
Query: 115 --------------------------RTISYIISQGSIFCIA---------------VAY 133
R + + + + A+
Sbjct: 95 QGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 134 AVSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSP 193
+ L + V L + R V ++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAW------------KLLLRD 202
Query: 194 TLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLL 253
+ + + + L Y + V G + +L + G+ + ++L+ L
Sbjct: 203 PVLWLLLALLLFGFAFFALLTYLPLYQE-VLGLSALLAGLLLGLAGLLGAIGRLLLGRLS 261
Query: 254 NPF-----------VALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKA 302
+ + +LA++ AL + W+ G LV P+ A++S
Sbjct: 262 DRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDL 321
Query: 303 SGLNNQGKAQGFIAGVQSISSLLSP 327
+ +G A G S+ L P
Sbjct: 322 APKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 25/177 (14%)
Query: 134 AVSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSP 193
A+ IA+L V + F + S P + +E S+RD + +
Sbjct: 177 ALIIAILAVVGFLICFAGTKERVSVPPEQKEKV--------------SLRDMFKALFKNR 222
Query: 194 TLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLL 253
L + + L M+ + +LL+Y V G N FS +L++ I +I+ L L
Sbjct: 223 PLLILLLLYLLNALAMAVRNGLLLYYFTYVLG-NAGLFSVLLLIGTIAAILGAPLWPWLA 281
Query: 254 NPFV--------ALLASIAYALFYGLAWASWVPYL--SASFGVIYVLVKPSTYAIIS 300
F LLA+I L + L S +L G+ L +A+++
Sbjct: 282 KRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLA 338
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.96 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.95 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.95 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.95 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.95 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.95 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.95 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.95 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.95 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.95 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.95 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.95 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.95 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.95 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.95 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.94 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.94 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.94 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.94 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.94 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.94 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.93 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.93 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.93 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.93 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.93 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.93 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.93 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.93 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.93 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.93 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.93 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.93 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.92 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.92 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.92 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.92 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.92 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.92 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.92 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.92 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.92 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.91 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.91 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.91 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.91 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.91 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.9 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.9 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.89 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.89 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.88 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.88 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.88 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.87 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.87 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.87 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.86 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.86 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.86 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.86 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.86 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.86 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.85 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.85 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.83 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.82 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.81 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.8 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.79 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.79 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.78 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.78 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.78 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.77 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.77 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.76 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.76 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.74 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.74 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.68 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.68 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.68 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.66 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.64 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.56 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.54 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.52 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.51 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.5 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.46 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.45 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.44 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.43 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.41 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.38 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.38 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.37 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.37 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.36 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.36 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.35 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.35 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.35 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.34 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.34 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.34 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.34 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.34 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.33 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.32 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.32 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.32 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.32 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.32 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.31 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.31 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.31 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.29 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.28 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.28 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.28 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.27 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.27 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.27 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.25 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.24 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.24 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.24 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.23 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.23 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.22 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.22 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.21 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.21 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.2 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.2 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.2 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.19 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.19 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.19 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.19 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.18 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.18 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.18 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.16 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.14 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.13 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.13 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.13 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.13 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.12 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.1 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.1 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.1 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.08 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.06 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.06 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.06 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.05 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.05 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.05 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.01 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.98 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.98 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.97 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.97 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.95 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.94 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.92 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.88 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 98.86 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.85 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.85 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.85 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.85 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.82 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.79 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.78 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.76 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.74 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.74 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.74 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.72 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.71 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.7 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.69 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.68 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.67 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.67 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.61 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.59 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.57 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.53 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.49 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.48 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.44 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.42 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.39 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.36 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.33 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.31 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.27 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.25 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.23 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.23 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.19 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.16 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.14 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.11 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.11 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.11 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.08 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.0 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.98 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.93 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.91 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.86 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.81 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.72 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.67 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.59 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.56 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.54 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.49 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.48 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.34 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.22 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.2 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.18 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.17 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.99 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.97 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.89 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.84 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.68 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 96.67 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.62 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.61 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 96.6 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.6 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.41 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.32 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.19 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.1 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.92 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.38 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 95.15 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.11 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 94.73 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 93.53 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 92.07 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 88.43 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 88.27 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 87.95 | |
| PRK11588 | 506 | hypothetical protein; Provisional | 86.69 | |
| TIGR03644 | 404 | marine_trans_1 probable ammonium transporter, mari | 85.92 | |
| PF08611 | 97 | DUF1774: Fungal protein of unknown function (DUF17 | 85.68 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 81.3 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 80.55 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 80.49 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 80.28 |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-28 Score=218.38 Aligned_cols=319 Identities=14% Similarity=0.111 Sum_probs=220.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHH
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITV 89 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~ 89 (390)
.++.+.++.++.........+.+|.+.++. |. +..+.|++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~---~~-----s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 81 (390)
T PRK03545 10 RVVTLALAAFIFNTTEFVPVGLLSDIAQSF---HM-----QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF 81 (390)
T ss_pred HHHHHHHHHHHHHhHHHHHHcchHHHHhHc---CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 344445555554444455666778776443 43 3466699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-----------------------------------
Q 016418 90 STTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA----------------------------------- 134 (390)
Q Consensus 90 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i----------------------------------- 134 (390)
++..++.+.+++++| ++.+++.|+++|+ +.+...+...+++
T Consensus 82 ~~~~~~~~~~~~~~~---~~~l~~~r~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 82 VLFIASHVLSALAWN---FTVLLISRIGIAF-AHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999 9999999999999 5466666666665
Q ss_pred ----------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHH
Q 016418 135 ----------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFF 204 (390)
Q Consensus 135 ----------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (390)
+.+++.++..+.....+||++++++ + +. +..++.+|+|.++......++
T Consensus 158 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~--~------------------~~-~~~~~~~~~~~~~~~~~~~~~ 216 (390)
T PRK03545 158 QYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHS--G------------------SL-KSLPLLFRRPALVSLYLLTVV 216 (390)
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc--c------------------hH-HHHHHHHhCcHHHHHHHHHHH
Confidence 2222233333333334454322100 0 11 113456678888776666666
Q ss_pred HHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH---HHHHHHHHhhHHHHH---HHHHHHHHHH-hHhcccchhH
Q 016418 205 YKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGS---IVSQILVLPLLNPFV---ALLASIAYAL-FYGLAWASWV 277 (390)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~ 277 (390)
.........++.+.++++..|.++.+.+.+....++.+ ....+++.||.+||. +......... .....++.+.
T Consensus 217 ~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (390)
T PRK03545 217 VVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWH 296 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 66666666778888888878999988888766555443 345578889988776 3232333322 2233444444
Q ss_pred HH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHH
Q 016418 278 PY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASI 356 (390)
Q Consensus 278 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (390)
.+ ..++.|++.....+...+.+.+..| +++++++|+.+...++|..+||.++|.++|.. +++. .+.+.+.
T Consensus 297 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-g~~~-------~~~~~~~ 367 (390)
T PRK03545 297 LSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL-GLSS-------IGYVGAA 367 (390)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhH-------HHHHHHH
Confidence 44 5567788777777777788888877 68899999999999999999999999999987 6665 3355556
Q ss_pred HHHHHHHhhhcccc
Q 016418 357 CLMVSLSCACMLDT 370 (390)
Q Consensus 357 ~~~~~~~~~~~~~~ 370 (390)
+.+++.+......+
T Consensus 368 ~~~~~~~~~~~~~~ 381 (390)
T PRK03545 368 LALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHcc
Confidence 66665555544443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=206.58 Aligned_cols=325 Identities=18% Similarity=0.174 Sum_probs=247.9
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLL 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~ 86 (390)
.+..++.+..+.|.....+.+..+.+|++.+|. |.++ ...|+..+.|.++..+++|+...+.||+.||++++
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl---~vs~-----~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl 82 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADL---GVSE-----GAAGQLITAYALGVALGAPLLALLTGRLERRRLLL 82 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHc---CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 345677888889999999999999999998665 4444 66699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------
Q 016418 87 ITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------- 134 (390)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------- 134 (390)
..+.++.++++++++++| ++.++++|++.|+ +.|..++...++.
T Consensus 83 ~~l~lFi~~n~l~alAp~---f~~Ll~aR~~~g~-a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt 158 (394)
T COG2814 83 GLLALFIVSNLLSALAPS---FAVLLLARALAGL-AHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158 (394)
T ss_pred HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999 9999999999999 6688877776666
Q ss_pred -------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHH
Q 016418 135 -------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFV 201 (390)
Q Consensus 135 -------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (390)
..+.+.++..+..+..+| +++.+++++ .+.++. ...+|+|+++...+.
T Consensus 159 ~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~~-----------------~~~~~~-~~~l~~p~v~~~l~~ 219 (394)
T COG2814 159 FLGQLFGWRATFLAIAVLALLALLLLWKLLP-PSEISGSLP-----------------GPLRTL-LRLLRRPGVLLGLLA 219 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCCC-----------------cchhHH-HHHhcCchHHHHHHH
Confidence 556666777777777888 111111111 122222 345679999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhccc-
Q 016418 202 SFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAW- 273 (390)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~- 273 (390)
.++...+.+..++|+.+++++..|+++..+++.+...|+.+. ..+|.+.|| +.++ ...+.++.++.+.+..
T Consensus 220 t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~ 298 (394)
T COG2814 220 TFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGA 298 (394)
T ss_pred HHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999998877776555 456889999 4444 3344444444444443
Q ss_pred chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHH
Q 016418 274 ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSII 352 (390)
Q Consensus 274 ~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~ 352 (390)
+.+... ..++.++.........+....+.. +|.++.+.+++....++|..+|..++|.++|+. ++.. ...
T Consensus 299 ~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~-g~~~-------~~~ 369 (394)
T COG2814 299 SPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDAL-GYAA-------TGW 369 (394)
T ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHH-------HHH
Confidence 444443 334556666656666666666644 489999999999999999999999999999985 6665 335
Q ss_pred HHHHHHHHHHHhhhcccccc
Q 016418 353 VASICLMVSLSCACMLDTEE 372 (390)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~ 372 (390)
+.+.+.+++..+.....+++
T Consensus 370 ~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 370 VGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 56666666666665544433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-27 Score=215.58 Aligned_cols=303 Identities=16% Similarity=0.044 Sum_probs=209.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHH
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITV 89 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~ 89 (390)
.....+...+++.+......+..|.+.++. |.+ ..+.|++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s-----~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (406)
T PRK11551 16 TIGLCFLVALLEGLDLQSAGVAAPRMAQEF---GLD-----VAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV 87 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 344555666677777777788888776554 443 356699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-----------------------------------
Q 016418 90 STTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA----------------------------------- 134 (390)
Q Consensus 90 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i----------------------------------- 134 (390)
++..++.+++.++++ ++.+++.|++.|+ +.+...+...+++
T Consensus 88 ~~~~~~~~~~~~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (406)
T PRK11551 88 ALFGLFSLATAQAWD---FPSLLVARLLTGV-GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163 (406)
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999989999999 9999999999999 5566666665555
Q ss_pred ----------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHH
Q 016418 135 ----------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFF 204 (390)
Q Consensus 135 ----------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (390)
+.+++.++..+.....+||+++++++++. ++ ++ . ...++.++. .+++..+......++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~-~~---~---~~~~~~~~~-~~~~~~~~~~~~~~~ 231 (406)
T PRK11551 164 GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA----GK-QR---A---PVLRALFGE-GRATATLLLWISYFF 231 (406)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc----ch-hh---h---hhHHHHhhh-hhhhHHHHHHHHHHH
Confidence 11222222333344456776543221110 00 00 0 001111111 112233334444444
Q ss_pred HHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH---HHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhH
Q 016418 205 YKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGS---IVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWV 277 (390)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 277 (390)
..........+.|.|+++. |+++.+.+......++.. .+..+++.||.+||+ +.....++...+...++.+.
T Consensus 232 ~~~~~~~~~~~~p~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (406)
T PRK11551 232 TLIVLYFLLNWLPSLLVGQ-GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAG 310 (406)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4555666777889998874 999888888776555443 456688999999888 33334444444555555544
Q ss_pred HH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 278 PY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 278 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
.. ..++.+++.+...+...++..|.+|+++||++.|+.+...+++..+||.+.|.+.++.
T Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 311 MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 43 4566777777778888899999999999999999999999999999999999999864
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=221.15 Aligned_cols=300 Identities=12% Similarity=0.038 Sum_probs=194.1
Q ss_pred HHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHh--
Q 016418 24 AEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAF-- 101 (390)
Q Consensus 24 ~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~-- 101 (390)
.-....+..|.+.+|. |.+ ..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.++.....++
T Consensus 44 ~r~~~~~~~~~i~~~~---~~s-----~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~ 115 (467)
T PRK09556 44 IRKNFKAAQNDMISTY---GLS-----TTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASL 115 (467)
T ss_pred HhcChhhhhHHHHHhc---CCC-----HHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHH
Confidence 3344566677665443 433 466799999999999999999999999999999998888887777665554
Q ss_pred ---ccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------H------------------
Q 016418 102 ---NQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------V------------------ 135 (390)
Q Consensus 102 ---~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------~------------------ 135 (390)
+++ ++.+++.|+++|+ +.+...|...+++ +
T Consensus 116 ~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~ 191 (467)
T PRK09556 116 GSGSVS---LGLMIALWALSGF-FQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVI 191 (467)
T ss_pred hcccch---HHHHHHHHHHHHH-HHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcch
Confidence 578 9999999999999 5455556666666 0
Q ss_pred -----HHHHHHHHHHHHHHhcccCCCCCcccccccc-ccc--ccccccccccccHHHH-HHhhhcCcchhHHHHHHHHHH
Q 016418 136 -----SIALLIFVPVYMQFFLVETVESAPRKDQESS-GLK--KAVNVLDRRYKSMRDA-ALMVVSSPTLRGISFVSFFYK 206 (390)
Q Consensus 136 -----~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 206 (390)
.+++.++..++.++..++++++.+..+.++. ++. .++++..++..+.++. .+..+++|.+|...+..++..
T Consensus 192 ~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 271 (467)
T PRK09556 192 GMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLY 271 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 0111222222333444554432211111100 000 0000000111122232 234678999999999888888
Q ss_pred HHhhhHHHHHHHHHhhhcCCCchhHHHHHHHH---HHHHHHHHHHHHhhHHHHH----HHHHHHHH--HHhHhcccchhH
Q 016418 207 LGMSGISAVLLFYLKAVFGFNKNQFSEILMMV---GIGSIVSQILVLPLLNPFV----ALLASIAY--ALFYGLAWASWV 277 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~ 277 (390)
........+.|.|+++.+|+++.+.+...... ++.+.+..++++||++||+ ........ ...+...++.+.
T Consensus 272 ~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (467)
T PRK09556 272 IVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYM 351 (467)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 88888899999999988899998877775543 3445567799999998876 11111112 122223334333
Q ss_pred H-HHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHH-HHhhhhhhhhhhhc
Q 016418 278 P-YLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSI-SSLLSPLAMSPLTS 335 (390)
Q Consensus 278 ~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~g~~~~g~l~~ 335 (390)
. ...+..|.+.............|..|++++|++.|+.+...++ |..++|.+.|.+.|
T Consensus 352 ~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 352 YLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 3 2334445433333333345667999999999999999999997 77999999999999
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=215.91 Aligned_cols=309 Identities=16% Similarity=0.168 Sum_probs=215.0
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHH
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLL 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l 85 (390)
+++|.+..+....++..++.++..+.+|.+.++. +.+ ..+.|++.+.+.++..+++++.|+++||+|||+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s-----~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l 85 (417)
T PRK10489 14 KTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMM---TGS-----TLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI 85 (417)
T ss_pred HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HCC-----HHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE
Confidence 3466777888889999999999999999988665 333 35669999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-----ccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------
Q 016418 86 LITVSTTIVPFTLLAF-----NQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------- 134 (390)
Q Consensus 86 ~~~~~~~~i~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------- 134 (390)
..+.++.+++....+. .++ ++.+++.|++.|+ +.+...+...+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (417)
T PRK10489 86 LLARGTCGLGFIGLALNAFLPEPS---LLAIYLLGLWDGF-FGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVI 161 (417)
T ss_pred EehHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHh
Confidence 9888877776655432 456 7888999999998 4344444444444
Q ss_pred ------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchh
Q 016418 135 ------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLR 196 (390)
Q Consensus 135 ------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (390)
....+..+...+..+.+||+++++++++ +..++.++.++..+++|.++
T Consensus 162 g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 227 (417)
T PRK10489 162 SPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPRE--------------HPLRSLLAGFRFLLASPVVG 227 (417)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccc--------------cchHHHHHHHHHHHcChHHH
Confidence 1111111122223344565432211100 01123344556677788877
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFY 269 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~ 269 (390)
...+..++... ......++|.|.++.+|.++.+.|++.+..++...+ ..+++.||.++++ +.....++.+.+
T Consensus 228 ~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 306 (417)
T PRK10489 228 GIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLF 306 (417)
T ss_pred HHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHH
Confidence 66655554333 356678889999987899998888887666554443 4455666544333 444455555556
Q ss_pred hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 270 GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 270 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
...++.+... ..++.|++.+...+...++.++..|++.||+++|+.+...++|+.+||.+.|.+.+.. ++..
T Consensus 307 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-g~~~ 379 (417)
T PRK10489 307 GLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-TPVA 379 (417)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-chhh
Confidence 5666554443 5566777777777888889999999999999999999999999999999999999976 5443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-27 Score=214.87 Aligned_cols=330 Identities=19% Similarity=0.222 Sum_probs=246.2
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHH
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLL 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l 85 (390)
-+++++..++.+.++..++..+....++.++.+. +.+....|++.++..++.++.+++.|.++||++||+++
T Consensus 7 lr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~l--------t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrril 78 (524)
T PF05977_consen 7 LRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQL--------TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRIL 78 (524)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 4678899999999999999999999999888654 23346779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc--cCchhhHHHHHHHHHHhhcccchHHHHHHHHH-----------------------------
Q 016418 86 LITVSTTIVPFTLLAFN--QSQEFVYAYYVLRTISYIISQGSIFCIAVAYA----------------------------- 134 (390)
Q Consensus 86 ~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i----------------------------- 134 (390)
+.+.+...+..+..++. .+....|.+++.-++.|+ +.+...|...+++
T Consensus 79 i~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~-~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPa 157 (524)
T PF05977_consen 79 ILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGI-GSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPA 157 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccch
Confidence 99998876655444332 111127889999999999 5578888888887
Q ss_pred ---------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHH
Q 016418 135 ---------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGIS 199 (390)
Q Consensus 135 ---------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (390)
....++.+..+......+.+.++++. + +++...++++.++.++++|.++..+
T Consensus 158 lgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~-~------------~e~~~~~l~~G~ryv~~~~~l~~~l 224 (524)
T PF05977_consen 158 LGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSL-P------------RERFFSALREGLRYVRSSPPLRSVL 224 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc-c------------hhhhhhhHHHHHHHHhcchHHHHHH
Confidence 11111122222222222321111110 0 1122347889999999999988887
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHhHhc
Q 016418 200 FVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFV--------ALLASIAYALFYGL 271 (390)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 271 (390)
+..++..+........+|.+.++.+|.++...|++.+..+++++++ +.+..++.++. +.+..++..+.+++
T Consensus 225 ~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~G-al~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal 303 (524)
T PF05977_consen 225 LRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILG-ALLLPRLRRRLSSRRLVLLASLLFALALLLLAL 303 (524)
T ss_pred HHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHH-HHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc
Confidence 7777777777777888999999999999999999999888877766 44555555443 55566667777888
Q ss_pred ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchH
Q 016418 272 AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFS 350 (390)
Q Consensus 272 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~ 350 (390)
.++.|... ..++.|++........++..++..|++.||++++++++....+..+|..+.|.+.+.. +... .
T Consensus 304 ~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~-g~~~-------a 375 (524)
T PF05977_consen 304 SPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF-GVRT-------A 375 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHH-------H
Confidence 88877765 5577888888888889999999999999999999999999999999999999999987 5544 3
Q ss_pred HHHHHHHHHHHHHhhh
Q 016418 351 IIVASICLMVSLSCAC 366 (390)
Q Consensus 351 ~~~~~~~~~~~~~~~~ 366 (390)
+.++++..+++..+..
T Consensus 376 l~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 376 LLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555545444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=216.76 Aligned_cols=334 Identities=13% Similarity=0.069 Sum_probs=210.8
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHH
Q 016418 13 HLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTT 92 (390)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~ 92 (390)
...+..+...+......+.+|.+.++. |.+ ..+.|++.+.+.++..+++++.|+++||+|||+++.++.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s-----~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 27 TMYLGYALFYFTRKSFNAAMPEMLADL---GLS-----RSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhHHHHHhc---CCC-----HHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 344444555554455677788776443 443 456699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------------
Q 016418 93 IVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------------- 134 (390)
Q Consensus 93 ~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------------- 134 (390)
+++.++.+++++ ++.+++.|++.|+ +.|...+...+++
T Consensus 99 ~~~~~~~~~~~~---~~~l~~~~~l~g~-~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 174 (434)
T PRK11663 99 GIINILFGFSSS---LWAFALLWVLNAF-FQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY 174 (434)
T ss_pred HHHHHHHHHHhH---HHHHHHHHHHHHH-HHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999 9999999999998 4344445555554
Q ss_pred -------HHHHHHHHHHHHHHHhcccCCCCCccccccccc-cc-ccccccccccccHHHHHH-hhhcCcchhHHHHHHHH
Q 016418 135 -------VSIALLIFVPVYMQFFLVETVESAPRKDQESSG-LK-KAVNVLDRRYKSMRDAAL-MVVSSPTLRGISFVSFF 204 (390)
Q Consensus 135 -------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 204 (390)
+.+++.++..+...+.+||++++...++.++.+ +. +..++..+...+.++.++ ..+++|.++...+..++
T Consensus 175 gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (434)
T PRK11663 175 GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVL 254 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHH
Confidence 222233333333445567765432111110000 00 000000111123334332 35678888888887777
Q ss_pred HHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHH---HHHHHHHHHHhhHH--HHH----H-HHHHHHHHHh-Hhc-c
Q 016418 205 YKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGI---GSIVSQILVLPLLN--PFV----A-LLASIAYALF-YGL-A 272 (390)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~--~~~----~-~~~~~~~~~~-~~~-~ 272 (390)
..........++|.|+++.+|+++.+.+...+..++ .+.+..+++.||+. +|+ . .......... ... .
T Consensus 255 ~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 334 (434)
T PRK11663 255 VYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF 334 (434)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc
Confidence 777778888899999988789999888776655444 44456689999982 222 1 1111111111 111 1
Q ss_pred cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHH
Q 016418 273 WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSI 351 (390)
Q Consensus 273 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~ 351 (390)
.+.+... ..+..|++.............|..|++++|++.|+.+...++|..++|.+.|.+.|+. +++. .+
T Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~-g~~~-------~f 406 (434)
T PRK11663 335 ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW-HWTG-------FF 406 (434)
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc-ccHH-------HH
Confidence 2222221 2222333222222333456688899999999999999999999999999999999976 5555 33
Q ss_pred HHHHHHHHHHHHhhh
Q 016418 352 IVASICLMVSLSCAC 366 (390)
Q Consensus 352 ~~~~~~~~~~~~~~~ 366 (390)
.+.+++.+++.+..+
T Consensus 407 ~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 407 VVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555444443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=209.77 Aligned_cols=319 Identities=12% Similarity=0.101 Sum_probs=219.8
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHH
Q 016418 12 LHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVST 91 (390)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~ 91 (390)
..+....++...+.....|.+|.++.+.+ |. +..+.|++.+...++..+.+++.|+++||+|||+++..+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~-----s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~ 85 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQL--GW-----AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CC-----cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence 66778889999999999999999875543 33 346779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------------
Q 016418 92 TIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------------- 134 (390)
Q Consensus 92 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------------- 134 (390)
..++.+.+.+.++ ++.+++.|+++|+ +.+...+...+++
T Consensus 86 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~ 161 (400)
T PRK11646 86 RAAGFATMAIAHE---PWLLWLSCILSGL-GGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY 161 (400)
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 8999999999999 5455556655555
Q ss_pred -------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHH
Q 016418 135 -------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKL 207 (390)
Q Consensus 135 -------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (390)
+.+...++..++..+..||.+++ ++ .++.++.++..+++|+++...+..+....
T Consensus 162 g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (400)
T PRK11646 162 DFRLVCATGAVLFVLAAAFNAWLLPAYKLS---TV----------------RTPVREGMTRVLRDKRFVTYVLTLTGYYM 222 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCccccc---cc----------------chhhHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 11222222222223334442110 00 00223345566778887766555544444
Q ss_pred HhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHH----HHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH
Q 016418 208 GMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQI----LVLPLLNPFV----ALLASIAYALFYGLAWASWVPY 279 (390)
Q Consensus 208 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 279 (390)
.......+.|.|.++..+ ++.+.+.+.+..++....... +..||.+.++ +....+++...+...++.+...
T Consensus 223 ~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 301 (400)
T PRK11646 223 LAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLF 301 (400)
T ss_pred HHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444456678899888744 677788887666555443322 2223333222 4445555565666666655443
Q ss_pred -HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHH
Q 016418 280 -LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICL 358 (390)
Q Consensus 280 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (390)
...+.+.+.+...|...++..+..|+++||+++|+.+....+|..+||.+.|.++|+.+++.. ....+...+.+.
T Consensus 302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~----~~~~~~~~~~~~ 377 (400)
T PRK11646 302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQ----PELPWMMLGIIG 377 (400)
T ss_pred HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCC----cchHHHHHHHHH
Confidence 446677788888888899999999999999999999999999999999999999998533222 112444445555
Q ss_pred HHHHHhh
Q 016418 359 MVSLSCA 365 (390)
Q Consensus 359 ~~~~~~~ 365 (390)
+++.+..
T Consensus 378 ~~~~~~~ 384 (400)
T PRK11646 378 LITLLAL 384 (400)
T ss_pred HHHHHHH
Confidence 5444443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-26 Score=207.97 Aligned_cols=326 Identities=16% Similarity=0.187 Sum_probs=213.9
Q ss_pred cccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchH
Q 016418 5 FWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPL 84 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~ 84 (390)
.+.++++..+....++..++.++..|.+|.++++.+ |.+ ..+.|++.+++.++..+++++.|+++||+|||++
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~--g~s-----~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~ 83 (399)
T PRK05122 11 LRLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQL--GFS-----AFLAGLVISLQYLATLLSRPHAGRYADTLGPKKA 83 (399)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Ccc-----HHHHHHHHHHHHHHHHHhchhhHhHHhccCCcch
Confidence 456788899999999999999999999999876554 433 3667999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc---cCc--hhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------
Q 016418 85 LLITVSTTIVPFTLLAFN---QSQ--EFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------- 134 (390)
Q Consensus 85 l~~~~~~~~i~~~~~~~~---~~~--~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------- 134 (390)
+..+.++.+++.+.+.++ ++. ..++.+++.|+++|+ +.+...+...+++
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 162 (399)
T PRK05122 84 VVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGI-GESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALA 162 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHh-hHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHH
Confidence 999999888776655443 221 126788999999999 5566555555544
Q ss_pred ----------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHH
Q 016418 135 ----------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGI 198 (390)
Q Consensus 135 ----------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (390)
....+..+..+......++.++.+++++ ++.+.++.++. .+..
T Consensus 163 ~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~------~~~~ 221 (399)
T PRK05122 163 IGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPPVKG---------------ERLPFRRVLGR------VWPY 221 (399)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc---------------cchhHHHHHHH------HHHH
Confidence 1111111111111222222111111000 00122222221 1222
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHH---HHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhc
Q 016418 199 SFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMM---VGIGSIVSQILVLPLLNPFV----ALLASIAYALFYGL 271 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 271 (390)
.....+....+.....+.+.|.++. |++.. +..... ..+.+.+..+.+.||.++|+ +....+++......
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 298 (399)
T PRK05122 222 GMGLALASIGFGTIATFITLYYAAR-GWDGA--ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL 298 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-ccccc--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 2223334445556667788887764 65432 333332 33334455688899998877 44455555555555
Q ss_pred ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchH
Q 016418 272 AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFS 350 (390)
Q Consensus 272 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~ 350 (390)
.++.+..+ ..++.|++.+...+.......+..|+++||++.|+.+...++|..++|.+.|.+.+.. +++. .
T Consensus 299 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~-------~ 370 (399)
T PRK05122 299 APSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-GYPS-------I 370 (399)
T ss_pred hccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH-------H
Confidence 66655444 5577888888888888888889999999999999999999999999999999999876 5554 3
Q ss_pred HHHHHHHHHHHHHhhhcccc
Q 016418 351 IIVASICLMVSLSCACMLDT 370 (390)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~ 370 (390)
+.+.+++.+++.+..+..++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 371 FLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34555555555555544443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-26 Score=208.63 Aligned_cols=327 Identities=18% Similarity=0.226 Sum_probs=223.6
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLI 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~ 87 (390)
++....++.+.++...+.++..|.+|.+.++. |.++.+....+.|++.+++.++..++++++|+++||+|||+++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 89 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQL---GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLR 89 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHH
Confidence 45677778889999999999999999998775 656544434567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------
Q 016418 88 TVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA--------------------------------- 134 (390)
Q Consensus 88 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------------------------- 134 (390)
+.+...++.++..+.++ ++.+++.|++.|+ +++. .+...+++
T Consensus 90 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 164 (408)
T PRK09874 90 SALGMGIVMVLMGLAQN---IWQFLILRALLGL-LGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGL 164 (408)
T ss_pred HHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-hhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888 9999999999999 4343 34444444
Q ss_pred ------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhH-HHHH
Q 016418 135 ------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRG-ISFV 201 (390)
Q Consensus 135 ------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 201 (390)
+.+++.++..+...+.+||+++++++++ ..+.++.++ ..++|+++. ....
T Consensus 165 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~~~~~~~~ 227 (408)
T PRK09874 165 LADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKE----------------MLHMREVVT-SLKNPKLVLSLFVT 227 (408)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh----------------hhHHHHHHH-hCcCCchHHHHHHH
Confidence 2222223333334445565432211110 001122223 334565544 3333
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhcCCCch---hHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhc
Q 016418 202 SFFYKLGMSGISAVLLFYLKAVFGFNKN---QFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGL 271 (390)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 271 (390)
.+...........+++.|..+..+.... ..+.+....++... ...+++.||++||+ +.....+..+....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Confidence 4444455556677788888775332221 12333333333333 34478899999887 44444444444555
Q ss_pred ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchH
Q 016418 272 AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFS 350 (390)
Q Consensus 272 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~ 350 (390)
.++.+..+ ..++.|++.+...|...+...+..|++++|+.+|+.+....+|..+||.++|.+.+.. +++. .
T Consensus 308 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~-------~ 379 (408)
T PRK09874 308 VQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFRA-------V 379 (408)
T ss_pred hccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chhH-------H
Confidence 55555554 5567888888889999999999999999999999999999999999999999999876 6655 3
Q ss_pred HHHHHHHHHHHHHhhhc
Q 016418 351 IIVASICLMVSLSCACM 367 (390)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ 367 (390)
|.+.+++.+++.+..+.
T Consensus 380 f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 380 FLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666665555444
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-26 Score=205.41 Aligned_cols=317 Identities=12% Similarity=0.065 Sum_probs=216.3
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLL 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~ 86 (390)
.+++++.+..+.++..++.+...|.+|.+.++. |.+ ..+.|++.+.+.++..+++++.|+++||+|||+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~---~~s-----~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~ 75 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQE---HLP-----TWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYY 75 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHc---CCC-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 356688889999999999999999999998654 443 366699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------
Q 016418 87 ITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------- 134 (390)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------- 134 (390)
.+.++..++...++++++ ++.+++.|+++|+ +.+...+...+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 151 (381)
T PRK03633 76 LASLIFAAGCAGLGLMVG---FWSWLAWRFVAGI-GCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVS 151 (381)
T ss_pred HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 9999999999999 5455555443333
Q ss_pred -----------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHH
Q 016418 135 -----------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSF 203 (390)
Q Consensus 135 -----------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (390)
......... .......+.++++++ + + + ..+. +..+++|.++......+
T Consensus 152 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~------~-----~---~~~~----~~~~~~~~~~~~~~~~~ 210 (381)
T PRK03633 152 KVSTELMSVLPWVTGLVLAA-ILPLLFTRILNQQAE--N------H-----D---STSI----WPMLKLRQARLGVNGCI 210 (381)
T ss_pred cccccccchHHHHHHHHHHH-HHHHHHhcccCCCCC--C------C-----C---CCCH----HHHHHhcchHHHHHHHH
Confidence 000000001 111111121111100 0 0 0 0122 22345677665544444
Q ss_pred HHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchh
Q 016418 204 FYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASW 276 (390)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 276 (390)
...........++|.|.++. |.++.+.+.+.+...+... +..+.+.||+++|+ +.....++..... ....
T Consensus 211 ~~~~~~~~~~~~lp~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~~~ 287 (381)
T PRK03633 211 ISGIVLGSLYGLMPLYLNHQ-GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQAA 287 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hhHH
Confidence 44555666778899999875 8888888877655544333 45578999998887 3333333333322 2222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHH
Q 016418 277 VPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASI 356 (390)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (390)
......+.+.+.....|..++...|..|+++++...+..+...++|..+||.+.|.+.|+. ++.. .|.+.+.
T Consensus 288 ~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~-------~f~~~~~ 359 (381)
T PRK03633 288 MAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SDNL-------LFIMIAS 359 (381)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccH-------HHHHHHH
Confidence 2224455666666778989999999999888888888888889999999999999999976 5544 3355555
Q ss_pred HHHHHHHhhhc
Q 016418 357 CLMVSLSCACM 367 (390)
Q Consensus 357 ~~~~~~~~~~~ 367 (390)
+.++..+..++
T Consensus 360 ~~l~~~~~~~~ 370 (381)
T PRK03633 360 VSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHHHh
Confidence 55544444443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=206.50 Aligned_cols=303 Identities=17% Similarity=0.183 Sum_probs=220.7
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHH
Q 016418 12 LHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVST 91 (390)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~ 91 (390)
+.+....++..++.++..+.+|.+..+. +.+ ..+.|++.+++.++..++++++|+++||+|||+++..+.++
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~s-----~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~ 73 (365)
T TIGR00900 2 RLLFAAQLISLIGTAITQVALPLYVLAG---TGS-----ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLI 73 (365)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHh---hcc-----HHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHH
Confidence 3466788899999999999999988664 333 36669999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc-----CchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------
Q 016418 92 TIVPFTLLAFNQ-----SQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------- 134 (390)
Q Consensus 92 ~~i~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------- 134 (390)
..++..+..+.+ + ++.+++.|++.|+ +.+...+...+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 149 (365)
T TIGR00900 74 RAVLVAVLPFVALLGGLN---IWQVYVLAGILAI-AQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG 149 (365)
T ss_pred HHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 888888877776 7 8999999999999 5566666666666
Q ss_pred -------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHH
Q 016418 135 -------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFV 201 (390)
Q Consensus 135 -------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (390)
+.++..++. .+..+.++++++++++++ + .+ .+..++.++.++.++|+|.++.....
T Consensus 150 ~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T TIGR00900 150 LMYATLGIKWAIWVDAVGFAIS-ALLIVSVRIPELAASEIQ--A-LS-------NAVLRDTREGIKFVLKNPLLRTLLLL 218 (365)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH-HHHHHhcccccCCCcccc--c-cc-------hhHHHHHHhHHHHHHcCcHHHHHHHH
Confidence 111111111 122222222211111100 0 00 00112334456677889998888887
Q ss_pred HHHHHHHhhhHH-HHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhccc
Q 016418 202 SFFYKLGMSGIS-AVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAW 273 (390)
Q Consensus 202 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 273 (390)
.++......... .+.|.|.++.+|.++.+.+.+....++... +..+++.||.+|++ +....++........+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (365)
T TIGR00900 219 ALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP 298 (365)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc
Confidence 777777766666 788888888789999988887766555444 34467788887777 3344445555555554
Q ss_pred c-hhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 274 A-SWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 274 ~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
+ .+... ..++.|++.+...+...++..|..|+++||++.|+.+...+++..++|.+.|.+.|..
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 299 PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 44443 5577888888889999999999999999999999999999999999999999999864
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-26 Score=203.34 Aligned_cols=285 Identities=14% Similarity=0.005 Sum_probs=203.0
Q ss_pred HHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHH
Q 016418 21 HWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLA 100 (390)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~ 100 (390)
+...+..+.|.+|.+.+|. |.++ .+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.....
T Consensus 3 ~~~~~~~~~~~lp~i~~~~---~~s~-----~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 74 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDI---DVSK-----EELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL 74 (368)
T ss_pred hhHHHHHHHhhHHHHHHHh---CcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 4556777889999887554 4443 5669999999999999999999999999999987766555555443333
Q ss_pred hccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------------------H
Q 016418 101 FNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------------------V 135 (390)
Q Consensus 101 ~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------------------~ 135 (390)
..++ ++.+++.|+++|+ +.+... .....+ +
T Consensus 75 ~~~~---~~~l~~~R~l~G~-g~~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~ 149 (368)
T TIGR00903 75 DPFN---YEWLLACQLLAAL-GQPFLL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP 149 (368)
T ss_pred Hhcc---HHHHHHHHHHHHh-HhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 4468 9999999999999 555432 222222 3
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHH
Q 016418 136 SIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAV 215 (390)
Q Consensus 136 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (390)
.+++.++..++.++.+||+++++++.. + .. +..+.+++++++|.++...+..++....+..+.+|
T Consensus 150 ~~~l~~~~~~~~~~~lp~~p~~~~~~~-----~------~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~w 214 (368)
T TIGR00903 150 IAAVAAAGIILVLAALPALPFQAAEGF-----G------FK----DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIW 214 (368)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCc-----c------hH----HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556666777888765432110 0 00 11123466778999999999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHhHhcccchhHHH-HHHHHHH
Q 016418 216 LLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFV--------ALLASIAYALFYGLAWASWVPY-LSASFGV 286 (390)
Q Consensus 216 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~ 286 (390)
+|.|+++. |++.. .+.......+.+.+..+++.||..||. .....++.........+.+..+ ...+.++
T Consensus 215 lp~~L~~~-g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 292 (368)
T TIGR00903 215 LEAALRPA-GLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGL 292 (368)
T ss_pred HHHHHHHC-CCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 99999764 77764 566666666777777789999987642 2222233333334444433333 3344556
Q ss_pred HHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 287 IYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+.....+..+++.+|.+|++.||++.|+.+...++++..+|.+.+.+..
T Consensus 293 ~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~ 341 (368)
T TIGR00903 293 LMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS 341 (368)
T ss_pred hhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 6666777788999999999999999999999999999999999988873
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=208.34 Aligned_cols=283 Identities=12% Similarity=0.019 Sum_probs=194.9
Q ss_pred HHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCc
Q 016418 26 AMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQ 105 (390)
Q Consensus 26 ~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~ 105 (390)
....|.+|.+.+|. |. +..+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+.++++++
T Consensus 26 ~~~~~~lp~i~~~~---~~-----s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~- 96 (393)
T PRK09705 26 TSVGPLLPQLRQAS---GM-----SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQ- 96 (393)
T ss_pred hccchhHHHHHHHh---CC-----CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcc-
Confidence 44678888776444 43 3466799999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------------------HHHHHH
Q 016418 106 EFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------------------VSIALL 140 (390)
Q Consensus 106 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------------------~~~~~~ 140 (390)
++.+++.|+++|+ +.+...+....++ +.++.
T Consensus 97 --~~~ll~~r~l~Gi-g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~- 172 (393)
T PRK09705 97 --SALLLSSALLGGV-GIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP- 172 (393)
T ss_pred --hHHHHHHHHHHHh-HHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Confidence 9999999999999 5566555555555 00111
Q ss_pred HHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHH
Q 016418 141 IFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYL 220 (390)
Q Consensus 141 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (390)
.+..+..++...+.+++++++ + + . +. +..+++|+.+...+..++....+.....+.|.|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~------~---~---~----~~----~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l 232 (393)
T PRK09705 173 AVVALFAWWWQSAREVASSHK------T---T---T----TP----VRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFY 232 (393)
T ss_pred HHHHHHHHHHHhcCCCccccC------C---C---c----CC----cccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111110000 0 0 0 00 1223466677777777777778888889999999
Q ss_pred hhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHHHHHHHHHHHhhhHH
Q 016418 221 KAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKP 293 (390)
Q Consensus 221 ~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 293 (390)
++ +|.+..+.|...+..++... +..+.+.||.+||+ +..+..++...+...++........+.+++.+...|
T Consensus 233 ~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~ 311 (393)
T PRK09705 233 IE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFP 311 (393)
T ss_pred HH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHH
Confidence 87 59999988887766555444 45578889988876 444444444433322221111223455777777777
Q ss_pred HHHHHHhhccC-CCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 294 STYAIISKASG-LNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 294 ~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
.......+..+ ++++|+.+|+.+...+++..++|.+.|++.|..++++.
T Consensus 312 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~ 361 (393)
T PRK09705 312 LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLM 361 (393)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence 77666666664 57889999999999999999999999999998744443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-25 Score=208.61 Aligned_cols=318 Identities=13% Similarity=0.037 Sum_probs=197.3
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHH-HHHHHHHHHHhHhhhhcccccccCCchHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGL-QQTVVGVFKMVVLPLLGQLADEYGRKPLLL 86 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~ 86 (390)
++.+....++.+++.++.+++....|...++. +.+..+.......+ +.++..++..+++++.|+++||+|||+++.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~ 91 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVF---FPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA 91 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34556667888999999998888888665443 22221211111122 357888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCchhhHH--------HHHHHHHHhhcccchHHHHHHHHH------------------------
Q 016418 87 ITVSTTIVPFTLLAFNQSQEFVYA--------YYVLRTISYIISQGSIFCIAVAYA------------------------ 134 (390)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~g~~~~~~~~~i------------------------ 134 (390)
.+.++++++.+++++++| ++. +++.|+++|+ +.|...+...+++
T Consensus 92 ~~~~l~~i~~~~~a~~~~---~~~~g~~a~~~l~~~R~l~G~-g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~ 167 (490)
T PRK10642 92 ITIVIMSISTFCIGLIPS---YATIGIWAPILLLLCKMAQGF-SVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGF 167 (490)
T ss_pred HHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHh-HhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999 653 8999999999 6677777777776
Q ss_pred ----------------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHH
Q 016418 135 ----------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAA 186 (390)
Q Consensus 135 ----------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (390)
..+.+..+..++....+||++++.++++..++.+.+.. ..+++.++++.+
T Consensus 168 ~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 245 (490)
T PRK10642 168 VLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGL--QDGPKVSFKEIA 245 (490)
T ss_pred HHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccc--cccccCCHHHHH
Confidence 00001111122223456776543221110000000000 001112333333
Q ss_pred HhhhcCcc-hhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHH---HHHHHHHHHHhhHHHHH----H
Q 016418 187 LMVVSSPT-LRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGI---GSIVSQILVLPLLNPFV----A 258 (390)
Q Consensus 187 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~----~ 258 (390)
+. +++ +.......++....++....++|.|+++.+|++..+.+.......+ .+.+..+++.||++||+ +
T Consensus 246 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 322 (490)
T PRK10642 246 TK---HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILG 322 (490)
T ss_pred HH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 21 222 2222223344556677788899999988788887765555433333 33345689999999998 2
Q ss_pred HHH-HHHHHHhH--hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 016418 259 LLA-SIAYALFY--GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLT 334 (390)
Q Consensus 259 ~~~-~~~~~~~~--~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~ 334 (390)
.+. ...+...+ ...++....+ ..++.+++.+........+..+.+|++.||++.|..+.....++.++|.+.+.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~ 402 (490)
T PRK10642 323 SVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLV 402 (490)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11112111 1222333333 3345566666666666778889999999999999866667777889999999998
Q ss_pred ccc
Q 016418 335 SWF 337 (390)
Q Consensus 335 ~~~ 337 (390)
+..
T Consensus 403 ~~~ 405 (490)
T PRK10642 403 EST 405 (490)
T ss_pred HHh
Confidence 754
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-25 Score=206.40 Aligned_cols=318 Identities=13% Similarity=0.105 Sum_probs=221.1
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLI 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~ 87 (390)
++.++.+..+.++..+..+...+.+|.+.++. |.++ .+.|++.+.+.++..++.+++|+++||+|||++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---g~s~-----~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 80 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSL---GESP-----LHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFT 80 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---CcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 45677888888888888889999999988654 5443 555899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------
Q 016418 88 TVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA--------------------------------- 134 (390)
Q Consensus 88 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------------------------- 134 (390)
+.++.+++.+++.++++ ++.+++.|+++|+ +.+...+...+++
T Consensus 81 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~ 156 (471)
T PRK10504 81 AIVLFTLGSLFCALSGT---LNELLLARVLQGV-GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL 156 (471)
T ss_pred HHHHHHHHHHHHHHhCC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999988899998 9999999999999 5566666655554
Q ss_pred ------------HHHHHHHHHHHHHHHhcccCCCCCccccccc---------------ccccccccc-------------
Q 016418 135 ------------VSIALLIFVPVYMQFFLVETVESAPRKDQES---------------SGLKKAVNV------------- 174 (390)
Q Consensus 135 ------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---------------~~~~~~~~~------------- 174 (390)
+......+..+......|+.+....+.+... ++++.....
T Consensus 157 l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (471)
T PRK10504 157 LVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVV 236 (471)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHH
Confidence 1111122222233333444322211110000 000000000
Q ss_pred --------cccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---
Q 016418 175 --------LDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI--- 243 (390)
Q Consensus 175 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~--- 243 (390)
+.+..++..+ ..++|||.++......++..........+.|.|+++.+|.++.+.++......+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 314 (471)
T PRK10504 237 ALLLYLLHARNNNRALFS--LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMK 314 (471)
T ss_pred HHHHHHHHHhcCCCCccC--HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000001101 235688999888888888888877778889999988789999888887765554443
Q ss_pred HHHHHHHhhHHHHH----HHHHHHHHHHhHhcc---cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHH
Q 016418 244 VSQILVLPLLNPFV----ALLASIAYALFYGLA---WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFI 315 (390)
Q Consensus 244 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 315 (390)
...+.+.||++||+ +.....+...++... ++.+... ..++.|++.+...+..+....+..|++++|+++|+.
T Consensus 315 ~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 394 (471)
T PRK10504 315 RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLL 394 (471)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHH
Confidence 34588999999887 333344333333332 2222222 345667788888888889999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhcccccC
Q 016418 316 AGVQSISSLLSPLAMSPLTSWFLST 340 (390)
Q Consensus 316 ~~~~~~~~~~g~~~~g~l~~~~~~~ 340 (390)
+....+|..+|+.+.|.+.+.. ++
T Consensus 395 ~~~~~~g~~ig~~i~g~ll~~~-g~ 418 (471)
T PRK10504 395 SMIMQLSMSIGVTIAGLLLGLF-GQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hh
Confidence 9999999999999999999876 44
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=201.49 Aligned_cols=295 Identities=16% Similarity=0.044 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHH
Q 016418 15 LLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIV 94 (390)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i 94 (390)
.+..+...++.++..|.+|.+.++. |.+ ..+.++..+.+.++..+++++.|+++||+|||+++..+.....+
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~~~~---~~s-----~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 90 (406)
T PRK15402 19 VLFEFATYIANDMIQPGMLAVVEDF---NAG-----AEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL 90 (406)
T ss_pred HHHHHHHHhhhhhHhcchHHHHHHh---CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 3334444456778888999877554 444 35668999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH----------------------------------------
Q 016418 95 PFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------------- 134 (390)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------------- 134 (390)
+.+...++++ ++.+++.|+++|+ +.+...+...+++
T Consensus 91 ~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w 166 (406)
T PRK15402 91 TCLAILLAQS---IEQFTLLRFLQGI-GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW 166 (406)
T ss_pred HHHHHHHHcc---HHHHHHHHHHHHh-HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 9999999999 9999999999998 4455444444443
Q ss_pred -----HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHh
Q 016418 135 -----VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGM 209 (390)
Q Consensus 135 -----~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (390)
+.+++.++..+..++..||++++++++. +..+..+.++.++++|+++...+..++.....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (406)
T PRK15402 167 RGMFVLFAALAALSFFGLWRAMPETAGRVGEKL---------------SLKELGRDYKLVLKNRRFVAGALALGLVSLPL 231 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCCccccccc---------------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 2222223333333344555432211100 00123444567788999888777777766666
Q ss_pred hhHHHHHHHHHhhhcCCCchhHHHHHHHHH---HHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcc-----cchhH
Q 016418 210 SGISAVLLFYLKAVFGFNKNQFSEILMMVG---IGSIVSQILVLPLLNPFV----ALLASIAYALFYGLA-----WASWV 277 (390)
Q Consensus 210 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~ 277 (390)
.....+.|.++++.+|+++.+.+....... +.+.+..+.+.||.++|+ +.....++...+... .+.+.
T Consensus 232 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 311 (406)
T PRK15402 232 LAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLW 311 (406)
T ss_pred HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHH
Confidence 666777888888888999888877654333 333445578889998877 333334444433321 22222
Q ss_pred H-HHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 278 P-YLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 278 ~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
. ...++.+++.+...+..+...... +++++|++.+..+....++..+|+.+.+.+++..
T Consensus 312 ~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 312 LTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG 371 (406)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 2 345677888877777666655444 4489999999999999999999999999998875
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-25 Score=199.31 Aligned_cols=292 Identities=13% Similarity=0.164 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHH
Q 016418 16 LPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVP 95 (390)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~ 95 (390)
...+..........+.+|.+.++. |.+ ..+.|+..+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~---g~s-----~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~ 98 (394)
T PRK10213 27 FCVACLIIVEFLPVSLLTPMAQDL---GIS-----EGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLS 98 (394)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHc---CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH
Confidence 333333333344566777776443 443 466699999999999999999999999999999999999999999
Q ss_pred HHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-----------------------------------------
Q 016418 96 FTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA----------------------------------------- 134 (390)
Q Consensus 96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i----------------------------------------- 134 (390)
.+++.++++ ++.+++.|+++|+ +.+...+...+++
T Consensus 99 ~~~~~~~~~---~~~l~~~r~l~G~-~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~ 174 (394)
T PRK10213 99 CLLVSFANS---FSLLLIGRACLGL-ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR 174 (394)
T ss_pred HHHHHHHCh---HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 999999999 9999999999999 5466666666665
Q ss_pred ----HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhh
Q 016418 135 ----VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMS 210 (390)
Q Consensus 135 ----~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (390)
+.+++.++..+......||++++++ + . .+..+..+++|.++...+..++......
T Consensus 175 ~~f~~~~~l~~~~~l~~~~~~p~~~~~~~--~------------------~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 233 (394)
T PRK10213 175 NVFNAAAVMGVLCIFWIIKSLPSLPGEPS--H------------------Q-KQNTFRLLQRPGVMAGMIAIFMSFAGQF 233 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCcccc--c------------------c-hhHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 2222222222222233454321110 0 0 0112345678888877666666666666
Q ss_pred hHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH---H-HHHHHHHHHhHhcccchhHHH-HHH
Q 016418 211 GISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV---A-LLASIAYALFYGLAWASWVPY-LSA 282 (390)
Q Consensus 211 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~-~~~ 282 (390)
...++.+.++.+.+|+++.+.+..+...++.+.+ ..+.+.||..|+. + .......+.+....++.+... ..+
T Consensus 234 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 313 (394)
T PRK10213 234 AFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAI 313 (394)
T ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6666764444445699998888877766655544 3345555543332 2 222222233333444555544 557
Q ss_pred HHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 283 SFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 283 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
+.|++.+...+...+.+++..| +++++..+......++|..+||.++|.++|.. ++..
T Consensus 314 l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~-g~~~ 371 (394)
T PRK10213 314 IWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNI-GLTS 371 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Chhh
Confidence 7888888889999989999887 66778888888888999999999999999976 5544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-25 Score=199.47 Aligned_cols=314 Identities=14% Similarity=0.103 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHH-HHHHHHH
Q 016418 15 LLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLL-ITVSTTI 93 (390)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~-~~~~~~~ 93 (390)
.+..++..++.++..|.+|.++++.+ |. +..+.|++.+++.+...+.+|+.|+++||+||||.++ .+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~--g~-----s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~ 75 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEV--RA-----RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAA 75 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHccc--CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 35678888999999999999875543 43 3466799999999999999999999999999988755 4566666
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------------
Q 016418 94 VPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA--------------------------------------- 134 (390)
Q Consensus 94 i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------------------------------- 134 (390)
++.++++++++ ++.+++.|++.|... +...|...++.
T Consensus 76 ~~~~~~~~~~~---~~~l~~~~~~~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~ 151 (375)
T TIGR00899 76 LACLLFAWNRN---YFLLLVLGVLLSSFA-STANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG 151 (375)
T ss_pred HHHHHHHhcch---HHHHHHHHHHHHhhh-hhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh
Confidence 77788888999 888999999888733 44444433322
Q ss_pred --------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHH
Q 016418 135 --------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYK 206 (390)
Q Consensus 135 --------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (390)
+.+...++..+..++.+||+++++++++ + . .+. +..+++|+++......++..
T Consensus 152 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------~---~~~----~~~~~~~~~~~~~~~~~~~~ 212 (375)
T TIGR00899 152 FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL------T------R---LEV----RGLLASRDTRLLFVACTLMW 212 (375)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc------C------c---chh----hhhhcCcchHHHHHHHHHHH
Confidence 2233333333444455777543321110 0 0 011 22345677766666665555
Q ss_pred HHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHH---HHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH
Q 016418 207 LGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIG---SIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY 279 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 279 (390)
........+.|.|+++.+|.++.+.+.+....... .....+.+.||++||+ +.....+........++.+..+
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (375)
T TIGR00899 213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALL 292 (375)
T ss_pred HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677788898888899998888776554333 3345578999999888 3333333333344444555444
Q ss_pred -HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHH
Q 016418 280 -LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICL 358 (390)
Q Consensus 280 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (390)
...+.+++.+...+....+.+|..| ++++++.|+.+...++|..++|.+.|.+.+.. +++. .+.+.+++.
T Consensus 293 ~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~~-------~~~~~~~~~ 363 (375)
T TIGR00899 293 MLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERW-SYHA-------VYWFAIVML 363 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchh-------HHHHHHHHH
Confidence 4466677778778888888899887 46779999999999999999999999999876 5554 335555555
Q ss_pred HHHHHhhhc
Q 016418 359 MVSLSCACM 367 (390)
Q Consensus 359 ~~~~~~~~~ 367 (390)
+++.+...+
T Consensus 364 ~~~~~~~~~ 372 (375)
T TIGR00899 364 IVALFCLLL 372 (375)
T ss_pred HHHHHHHhe
Confidence 555555443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=202.88 Aligned_cols=289 Identities=12% Similarity=0.040 Sum_probs=199.0
Q ss_pred HHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCc
Q 016418 26 AMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQ 105 (390)
Q Consensus 26 ~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~ 105 (390)
....+..|.+.++. |.+ ..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+.++++++
T Consensus 20 ~~~~~~~~~~~~~~---~~s-----~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~- 90 (377)
T TIGR00890 20 YTWTLLAPPLGRYF---GVG-----VTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADS- 90 (377)
T ss_pred hhhhhHHHHHHHHh---CCC-----HHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHH-
Confidence 34556677665443 443 466799999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------------------HHHHHHH
Q 016418 106 EFVYAYYVLRTISYIISQGSIFCIAVAYA--------------------------------------------VSIALLI 141 (390)
Q Consensus 106 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------------------------------------~~~~~~~ 141 (390)
++.+++.|++.|+ +.+...+.....+ +.+++.+
T Consensus 91 --~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 167 (377)
T TIGR00890 91 --LAALYLTYGLASA-GVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFL 167 (377)
T ss_pred --HHHHHHHHHHHhH-HHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999 5454433333332 2223333
Q ss_pred HHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHh
Q 016418 142 FVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLK 221 (390)
Q Consensus 142 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (390)
+..+..++.+||+++++++++ ++. . +.+...++.+++|.++...+..++..........+.+.|.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~----~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (377)
T TIGR00890 168 LVIVLGAFLIGYPPGQLIKTN----IEV------S----VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQ 233 (377)
T ss_pred HHHHHHHHheecCchhccccC----ccc------c----hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333334444555433211111 000 0 00111244567888877777666666666666667777765
Q ss_pred hhcCCCchhHHHHHHHHHHHH---HHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccch--hHH-HHHHHHHHHHhhh
Q 016418 222 AVFGFNKNQFSEILMMVGIGS---IVSQILVLPLLNPFV----ALLASIAYALFYGLAWAS--WVP-YLSASFGVIYVLV 291 (390)
Q Consensus 222 ~~~g~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~-~~~~~~g~~~~~~ 291 (390)
+ +|.+..+.+.+....++.. .+..+++.||++||+ +.....++.+.....++. +.. ...++.+.+.+..
T Consensus 234 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 312 (377)
T TIGR00890 234 S-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT 312 (377)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccc
Confidence 5 5888777776665554443 455689999999988 444455555545444432 222 2345567777777
Q ss_pred HHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 292 KPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 292 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
.+...++.+|..|+++|+++.|+.+...++|..++|.+.|.+.+.. +++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~ 362 (377)
T TIGR00890 313 ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GFEY 362 (377)
T ss_pred hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chhh
Confidence 7777888999999999999999999999999999999999999876 6554
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=207.43 Aligned_cols=310 Identities=15% Similarity=0.113 Sum_probs=208.2
Q ss_pred HHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHH
Q 016418 21 HWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLA 100 (390)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~ 100 (390)
..+......+..|.+.++. |.++ .+.|++.+++.++..+++++.|+++||+|||+++..+.++..++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~---g~s~-----~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 77 (399)
T TIGR00893 6 NYLDRANLSFAAPMLQEDL---GLSA-----AQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA 77 (399)
T ss_pred HHHHHHhhhHhHHHHHHhh---CCCh-----hhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence 3344455556666554333 4443 5569999999999999999999999999999999999999999999999
Q ss_pred hccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------------------H
Q 016418 101 FNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------------------V 135 (390)
Q Consensus 101 ~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------------------~ 135 (390)
++++ ++.+++.|++.|+ +.+...+...+++ +
T Consensus 78 ~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 153 (399)
T TIGR00893 78 FAGA---YVSLYILRVLLGA-AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII 153 (399)
T ss_pred HHcC---HHHHHHHHHHHHH-HHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 9999 9999999999999 5566666666655 2
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccccc--cc--cccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhh
Q 016418 136 SIALLIFVPVYMQFFLVETVESAPRKDQESSGL--KK--AVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSG 211 (390)
Q Consensus 136 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (390)
.+++.++..+...+..||++++++..+++++++ +. .+.+..++.++.++..++.+++|+++...+..++.......
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (399)
T TIGR00893 154 EGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGF 233 (399)
T ss_pred HHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHH
Confidence 222333333334444566544322111110000 00 00000011111222345667789999888888888888999
Q ss_pred HHHHHHHHHhhhcCCCchhHHHHHHHHHH---HHHHHHHHHHhhHHHHH-----H---HHHHH--HHHHhH--hcccchh
Q 016418 212 ISAVLLFYLKAVFGFNKNQFSEILMMVGI---GSIVSQILVLPLLNPFV-----A---LLASI--AYALFY--GLAWASW 276 (390)
Q Consensus 212 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~-----~---~~~~~--~~~~~~--~~~~~~~ 276 (390)
...+.|.|+++.+|.++.+.+.+....++ .+.+..+++.||++||+ . ..... ...... ...++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (399)
T TIGR00893 234 FLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPY 313 (399)
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 99999999998889998888877655544 44456689999999884 1 11110 111111 1122333
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 277 VPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
........+.+.....+...++.+|..|+++||+++|+.+...+++..++|.+.|.+.|..++++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~ 379 (399)
T TIGR00893 314 AALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAG 379 (399)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhH
Confidence 333333333333337888999999999999999999999999999999999999999997622544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=193.76 Aligned_cols=320 Identities=14% Similarity=0.130 Sum_probs=232.9
Q ss_pred hHhHHHHHHHHHHHHH----HHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHH
Q 016418 12 LHLLLPLCVHWVAEAM----TVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLI 87 (390)
Q Consensus 12 ~~~~~~~~~~~~~~~~----~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~ 87 (390)
+.++.+.++...++.. .....|.+.++. + .+..+.|++.+.+.+.+.++-.+.|.++||.+.|+.+..
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~---~-----lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~ 99 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDG---G-----LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhc---C-----CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence 4455566666666554 455566555332 2 334667999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------
Q 016418 88 TVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA--------------------------------- 134 (390)
Q Consensus 88 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------------------------- 134 (390)
++++.++..++++++++ .+.+.++.+++|.+. |...|.+...+
T Consensus 100 gLilsai~nil~Gfs~s---~~~~~~l~~lng~fQ-g~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l 175 (448)
T COG2271 100 GLILSAIVNILFGFSPS---LFLFAVLWVLNGWFQ-GMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL 175 (448)
T ss_pred HHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHh-cCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH
Confidence 99999999999999999 999999999999954 55566666655
Q ss_pred --------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccc-c--ccccccccccHHH-HHHhhhcCcchh
Q 016418 135 --------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKK-A--VNVLDRRYKSMRD-AALMVVSSPTLR 196 (390)
Q Consensus 135 --------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~-~~~~~~~~~~~~ 196 (390)
+.++++++..++.++..+|+|+...-++.++..++. + +++++++..+.+| .++.+++||.+|
T Consensus 176 a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW 255 (448)
T COG2271 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIW 255 (448)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHH
Confidence 445566667777778888888764333222111110 0 1111111123333 458899999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHH---HHHHHHHHHHHHHHhhHH--HHH-----HHHHHHHHH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILM---MVGIGSIVSQILVLPLLN--PFV-----ALLASIAYA 266 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~ 266 (390)
.+.+++++.+..-++++.|.|.|+.|..|+|....+...+ ..++.+.++.|+++||+- ||. .++...++.
T Consensus 256 ~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~ 335 (448)
T COG2271 256 LLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASL 335 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888777655 456677788899999975 333 333344444
Q ss_pred HhHhcccch--hHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHH-HHhhhhhhhhhhhcccccCCC
Q 016418 267 LFYGLAWAS--WVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSI-SSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 267 ~~~~~~~~~--~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~g~~~~g~l~~~~~~~~~ 342 (390)
+.+...++. +... +.+..|+...+..-..-....|..|++..|++.|+...+..+ |...+....|.+.|.+ ++..
T Consensus 336 ~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~-gW~g 414 (448)
T COG2271 336 VLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW-GWDG 414 (448)
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC-CCcc
Confidence 555555543 3333 445566666555555566778999999999999999999999 8888888899998874 5544
Q ss_pred CC
Q 016418 343 PF 344 (390)
Q Consensus 343 ~~ 344 (390)
.|
T Consensus 415 ~F 416 (448)
T COG2271 415 GF 416 (448)
T ss_pred hH
Confidence 33
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=207.49 Aligned_cols=310 Identities=14% Similarity=0.053 Sum_probs=194.6
Q ss_pred chhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhcc----CchhhHHHHHHHHHHhhccc
Q 016418 48 SEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQ----SQEFVYAYYVLRTISYIISQ 123 (390)
Q Consensus 48 ~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~----~~~~~~~l~~~r~l~G~~~~ 123 (390)
+.+....|++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+++++.+ + ++.+++.|++.|++.
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~l~gi~~- 134 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGWFQ- 134 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccccc---HHHHHHHHHHHHHHH-
Confidence 44456679999999999999999999999999999999999999999988887753 5 778889999999843
Q ss_pred chHHHHHHHHH----------------------------------------------HHHHHHHHHHHHHHHhcccCCCC
Q 016418 124 GSIFCIAVAYA----------------------------------------------VSIALLIFVPVYMQFFLVETVES 157 (390)
Q Consensus 124 g~~~~~~~~~i----------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~ 157 (390)
+...+.....+ +.+++.++..++..+++||++++
T Consensus 135 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~ 214 (452)
T PRK11273 135 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQS 214 (452)
T ss_pred hccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence 44444333333 11111222223344556776543
Q ss_pred Cccccccc-cccc-ccccccccccccHHHHH-HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHH
Q 016418 158 APRKDQES-SGLK-KAVNVLDRRYKSMRDAA-LMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEI 234 (390)
Q Consensus 158 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 234 (390)
...++.++ +++. ++.++..++..+.++.+ +.++|+|.+|...+..++..........++|.|+++..|++..+.+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~ 294 (452)
T PRK11273 215 CGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWA 294 (452)
T ss_pred cCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 21111100 0000 00000001111233432 346788999988888888888878888999999998889988887766
Q ss_pred HHHH---HHHHHHHHHHHHhhH--HHHH--HH---HHHHHHHHhHhc--ccchhHHH-HHHHHHHHHhhhHHHHHHHHhh
Q 016418 235 LMMV---GIGSIVSQILVLPLL--NPFV--AL---LASIAYALFYGL--AWASWVPY-LSASFGVIYVLVKPSTYAIISK 301 (390)
Q Consensus 235 ~~~~---~~~~~~~~~~~~~~~--~~~~--~~---~~~~~~~~~~~~--~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~ 301 (390)
.... ++.+.+..++++||+ +||. .. .+..++...+.. ..+.+..+ ..+..+.+.....+....+..|
T Consensus 295 ~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 374 (452)
T PRK11273 295 YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALE 374 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5443 344456679999998 4443 11 112222222222 22222222 2233333332223334456779
Q ss_pred ccCCCchhhHHHHHHHHHHHHHhh-hhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhccc
Q 016418 302 ASGLNNQGKAQGFIAGVQSISSLL-SPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLD 369 (390)
Q Consensus 302 ~~~~~~~g~~~g~~~~~~~~~~~~-g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (390)
..|++.+|++.|+.+...++++.+ +|.+.|.+.|+. +++. .|.+.+.+.+++.+......
T Consensus 375 ~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~-g~~~-------~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 375 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDG-------GFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh-cchH-------HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888765 799999999987 6555 33445555555555444333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=201.61 Aligned_cols=317 Identities=16% Similarity=0.145 Sum_probs=207.1
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLL 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~ 86 (390)
.++.++.+....++..++.++..|.+|.++.+++ |.+ ..+.|++.+++.++..+++|++|+++||+||||++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~l--g~s-----~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~ 85 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDL--GFG-----NTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSAL 85 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhc--CCc-----HHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHH
Confidence 3556778888889999999999999998876554 444 366799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH---Hh-----ccCchhhHHHHHHHHHHhhcccchHHHHHHHHH------------------------
Q 016418 87 ITVSTTIVPFTLL---AF-----NQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------ 134 (390)
Q Consensus 87 ~~~~~~~i~~~~~---~~-----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------ 134 (390)
.+.+...++.+.. .. .++ ++.+++.|+++|+ +.+...+...+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~ 161 (392)
T PRK12382 86 QGMLACGLAGLAYLLAAILPVSAPFK---FALLVVGRLILGF-GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGAL 161 (392)
T ss_pred HHHHHHHHHHHHHHhhhccccchhHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHH
Confidence 9988777655432 22 235 7889999999999 5555555555544
Q ss_pred -----------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhH
Q 016418 135 -----------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRG 197 (390)
Q Consensus 135 -----------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (390)
..+.+..+..+..+...++.++.+++++ + +.+.++..+..++ +.
T Consensus 162 ~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------~~~~~~~~~~~~~-~~--- 222 (392)
T PRK12382 162 AAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPAHAG---------E------RPSLWSVVGLIWK-PG--- 222 (392)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCCCcc---------c------CchHHHHHHHHHH-hH---
Confidence 1111111111112222222211111000 0 0122232222221 11
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHH---HHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHh
Q 016418 198 ISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVG---IGSIVSQILVLPLLNPFV----ALLASIAYALFYG 270 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 270 (390)
+..++..........+.+.|+++. |++.. +......+ +.+.+..+.+.||.++|+ +.....++.....
T Consensus 223 --~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 297 (392)
T PRK12382 223 --LGLALQGVGFAVIGTFVSLYFASK-GWAMA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW 297 (392)
T ss_pred --HHHHHHHHHHhHHHHHHHHHHHhc-CCchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH
Confidence 222233344555667778888764 66543 33333333 333345578889988877 4555555555555
Q ss_pred cccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCch
Q 016418 271 LAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGF 349 (390)
Q Consensus 271 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~ 349 (390)
..++.+..+ ..++.+++.+...+...+...+..|+++||++.|+.+....+|..++|.+.|.+.|+. +++.
T Consensus 298 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~------- 369 (392)
T PRK12382 298 LAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYPS------- 369 (392)
T ss_pred HcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchH-------
Confidence 556555444 5567788888888888888899999999999999999999999999999999999987 6655
Q ss_pred HHHHHHHHHHHHHHhhh
Q 016418 350 SIIVASICLMVSLSCAC 366 (390)
Q Consensus 350 ~~~~~~~~~~~~~~~~~ 366 (390)
.+.+.+.+.+++....+
T Consensus 370 ~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 370 VFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455555555555444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=200.47 Aligned_cols=299 Identities=11% Similarity=0.084 Sum_probs=208.1
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCC-chHHHHHHHH
Q 016418 13 HLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGR-KPLLLITVST 91 (390)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr-k~~l~~~~~~ 91 (390)
.+....++....+++..|.++.++.+.+ |.+ ..+.|++.+++.++..++++++|+++||+|| |+++..+.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~--g~s-----~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~ 78 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTL--HFS-----GAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFA 78 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4566788889999999999999986653 433 3667999999999999999999999999965 7788888888
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHH-----------H--------------------------
Q 016418 92 TIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAY-----------A-------------------------- 134 (390)
Q Consensus 92 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~-----------i-------------------------- 134 (390)
..++..+..+.++ ++.+++.|++.|+. .+...+...+. +
T Consensus 79 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~-~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~lG~~ig~~l~g~l~ 154 (418)
T TIGR00889 79 GALLLFFAAQVTT---PAGMFPVLLANSLA-YMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGTIGFIAAMWAVSLLD 154 (418)
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHHH-HccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehhHHHHHHHHHHHHhc
Confidence 8888888888888 88889999988883 33333332222 1
Q ss_pred ---------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHH
Q 016418 135 ---------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFY 205 (390)
Q Consensus 135 ---------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (390)
+.+++.++.. +..+.+||+++.+++++ .+ .++ ..+...+.++|+|+++.+.+..++.
T Consensus 155 ~~~~~~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~----~~-------~~~--~~~~~~~~~~k~~~~~~~~~~~~~~ 220 (418)
T TIGR00889 155 IELSNIQLYITAGSSALLG-VFALTLPDIPVAKSTAK----MS-------IKV--MLGLDAFILFKNKRMAIFFFFSMLL 220 (418)
T ss_pred ccchhHHHHHHHHHHHHHH-HHHhcCCCCCCCccccc----cC-------HHH--HhhhhHHHHhcCCCeeeHHHHHHHH
Confidence 2222222222 23345676543221111 00 000 1111124467889988888888887
Q ss_pred HHHhhhHHHHHHHHHhhhcCCCc--------hhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHh
Q 016418 206 KLGMSGISAVLLFYLKAVFGFNK--------NQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYG 270 (390)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~--------~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 270 (390)
.........+.+.|.++. |.++ ...+...+...+... +..+.+.||+++|+ +.+...++...+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~ 299 (418)
T TIGR00889 221 GAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFA 299 (418)
T ss_pred HhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 776667777888888764 5443 455666665554443 45578899999988 4555555544444
Q ss_pred ccc-ch---hHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHH-HHHHHHHhhhhhhhhhhhccc
Q 016418 271 LAW-AS---WVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIA-GVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 271 ~~~-~~---~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~g~~~~g~l~~~~ 337 (390)
... +. +..+ ..++.+++.+...+....++.|..|+++||+++|+.+ ....+|..+||.++|.++|+.
T Consensus 300 ~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~ 372 (418)
T TIGR00889 300 YGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKM 372 (418)
T ss_pred HcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 432 22 2233 4567788888888888899999999999999999997 567899999999999999986
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=200.64 Aligned_cols=307 Identities=12% Similarity=0.100 Sum_probs=207.8
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLI 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~ 87 (390)
+|+++.++.+.++..++..+.....+.+..+. +.++ ...+++.+.+.++..+.+|++|+++||+|||++++.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~-----~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~ 73 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKEL---HYPD-----WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFI 73 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcH-----HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHH
Confidence 35677888999999998877777777666444 3333 456999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-----------------------------HHH-
Q 016418 88 TVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-----------------------------VSI- 137 (390)
Q Consensus 88 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-----------------------------~~~- 137 (390)
+.++..++.+.+.++.+ . ++.|+++|+ +.+...|...+++ +.+
T Consensus 74 ~~~~~~~~~~~~~~~~~---~---~~~r~l~G~-~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~ 146 (393)
T PRK11195 74 ANGIKLLGCLLMLFGIH---P---LLAYGLVGI-GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA 146 (393)
T ss_pred HHHHHHHHHHHHHHHHH---H---HHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777665 4 678999999 6677888888877 000
Q ss_pred -----------HHH--HHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHH
Q 016418 138 -----------ALL--IFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFF 204 (390)
Q Consensus 138 -----------~~~--~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (390)
+.. .+...+..+.+||+++++++++ .+ +.+...+.++.++.++++|.++.......+
T Consensus 147 l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~----~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (393)
T PRK11195 147 LADPHAEAALAVCALIYLLAALFNLFIPRLGARRPGQS----WN------PIALLRDFFHACRVLWRDKLGRFSLAGTTL 216 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccC----CC------HHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 000 0111223345676543221111 00 000112334445667788887766655555
Q ss_pred HHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHH---HHHHhhHHHHH----HHHHHHHHHHhHhcccchhH
Q 016418 205 YKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQ---ILVLPLLNPFV----ALLASIAYALFYGLAWASWV 277 (390)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 277 (390)
............+.|+++.+|.++.+.|.+....+++..+.+ +.+.||.+++. +. ..+.....+...++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 295 (393)
T PRK11195 217 FWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLP 295 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHH
Confidence 555556667777888888899999999998877766555442 33344433333 32 22222333344445554
Q ss_pred HH-HHHHHHHHHhhhHHHHHHHHhhccCCCc-hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 278 PY-LSASFGVIYVLVKPSTYAIISKASGLNN-QGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 278 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
.. ..++.|++.+...+..++..++..|++. +|++.++.+..++++..++..+.+.+. .. +...
T Consensus 296 ~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 360 (393)
T PRK11195 296 AYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV-KL-GVPV 360 (393)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH-Hc-CCCH
Confidence 43 4567788888877878888888766554 799999999999999999999998664 33 4444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-26 Score=208.08 Aligned_cols=294 Identities=16% Similarity=0.137 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHH-HHHHHhhcccchHHHH
Q 016418 51 IYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYV-LRTISYIISQGSIFCI 129 (390)
Q Consensus 51 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~g~~~~~ 129 (390)
....+++.+.+.+...++.++.|+++||+|||++++.+.++..++.++++++++ ++.+++ .|++.|+ +.+...+.
T Consensus 53 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~G~-~~~~~~~~ 128 (455)
T TIGR00892 53 YSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN---VIELYLTAGFITGL-GLAFNFQP 128 (455)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHh-cchhhhhH
Confidence 355589999999999999999999999999999999999999999999999988 887765 5689998 54544334
Q ss_pred HHHHH--------------------------------------------HHHHHHHHHHHHHHHhcccCCCCCccccc--
Q 016418 130 AVAYA--------------------------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQ-- 163 (390)
Q Consensus 130 ~~~~i--------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-- 163 (390)
..+++ +.+++.++..+..++..|+.+.++..+++
T Consensus 129 ~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 208 (455)
T TIGR00892 129 SLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK 208 (455)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc
Confidence 44433 22222222222222333322211100000
Q ss_pred cc-cccccccc-ccccccccHHHHH-HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 016418 164 ES-SGLKKAVN-VLDRRYKSMRDAA-LMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGI 240 (390)
Q Consensus 164 ~~-~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 240 (390)
+. +.+...++ ......+..++.. ..++++|.++......++..........+++.|.++ .|+++.+.+.+.+..++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~ 287 (455)
T TIGR00892 209 EGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGF 287 (455)
T ss_pred ccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 00 00000000 0000001111110 135678888888888888888877888899999987 49999999998887777
Q ss_pred HHHHH---HHHHHhh--HHHHH------HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCch
Q 016418 241 GSIVS---QILVLPL--LNPFV------ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQ 308 (390)
Q Consensus 241 ~~~~~---~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 308 (390)
...+. .+++.|| .++++ +....++..+.....++.+..+ ..++.|++.+...+...+.+.|.+|++++
T Consensus 288 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~ 367 (455)
T TIGR00892 288 VDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRF 367 (455)
T ss_pred HHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHH
Confidence 66643 4677876 22332 2222233334444555555544 56788888888888899999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCch
Q 016418 309 GKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGF 349 (390)
Q Consensus 309 g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~ 349 (390)
|+++|+++...++|+.+||.++|.+.|..++++..++..+.
T Consensus 368 g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~ 408 (455)
T TIGR00892 368 SSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGS 408 (455)
T ss_pred hhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhH
Confidence 99999999999999999999999999987556665544443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-25 Score=199.97 Aligned_cols=305 Identities=12% Similarity=0.113 Sum_probs=211.2
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLL 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~ 86 (390)
.+|+++.+....++...+.+...|.+|.++++.+ |.+ ..+.|++.+.+.++..+++++.|+++||+|||+++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~--g~s-----~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~ 77 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQY--SLS-----VDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYML 77 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHH
Confidence 4455777888899999999999999999986544 444 366699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------
Q 016418 87 ITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------- 134 (390)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------- 134 (390)
.+.+...++.++.+++++ ++.+++.|.+.|. +.+...+...++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~ 153 (395)
T PRK10054 78 LAITAFASGFIAIPLVNN---VTLVVLFFALINC-AYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGT 153 (395)
T ss_pred HHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 8888888888776 3233333333332
Q ss_pred ------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHH
Q 016418 135 ------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVS 202 (390)
Q Consensus 135 ------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (390)
+.+++.++..+...+.+||+++++++++ + + . ++ .+..+|+|+++...+..
T Consensus 154 ~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~------~-------~---~-~~-~~~~~~~~~~~~~~~~~ 215 (395)
T PRK10054 154 LLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATET------G-------S---V-WS-PSVLLQDKALLWFTCSG 215 (395)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHHHHhccccccccch------h-------h---h-hh-hhhhccCceehHHHHHH
Confidence 2222223333333344555432211100 0 0 0 00 14456788988888887
Q ss_pred HHHHHHhhhHHHHHHHHHhhh--cCCCchhHHHHHHHHHHHHHHH---HHHHHhhHHHHH----HHHHHHHHHHhHhcc-
Q 016418 203 FFYKLGMSGISAVLLFYLKAV--FGFNKNQFSEILMMVGIGSIVS---QILVLPLLNPFV----ALLASIAYALFYGLA- 272 (390)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~- 272 (390)
++..+.......+.+.|..+. .+.+....+.++...++..... .+.+.||.++|. ++....++...+...
T Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 295 (395)
T PRK10054 216 FLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG 295 (395)
T ss_pred HHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc
Confidence 777777666666677776433 3445556666666555443332 245667776666 444455555555543
Q ss_pred cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 273 WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 273 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
++.+... ...+.+++.+...|...+.+.+..|++.+|+..+..+ ...+|..+||.++|.++|+. ++..
T Consensus 296 ~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~-g~~~ 364 (395)
T PRK10054 296 NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL-PPWS 364 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc-Chhh
Confidence 3444333 5677888888888888899999999999999998765 66789999999999999987 5554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=213.28 Aligned_cols=335 Identities=17% Similarity=0.149 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHH
Q 016418 15 LLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIV 94 (390)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i 94 (390)
.++.+...+......+.+|.+..+. +.+. .+.|++.+++.++.+++++++|+++||+|||++++++.++.++
T Consensus 173 ~l~~~~~g~d~~~is~ilp~i~~~~---gls~-----~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i 244 (742)
T TIGR01299 173 GLALMADGVEVFVVGFVLPSAEKDL---CIPD-----SGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGF 244 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3334444444455677777665444 4433 5569999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------H--------------
Q 016418 95 PFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------V-------------- 135 (390)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------~-------------- 135 (390)
+.++++++++ ++.++++|++.|+ +.+...+...+++ +
T Consensus 245 ~~ll~afa~s---~~~llv~R~l~G~-g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 245 FAFFSSFVQG---YGFFLFCRLLSGF-GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999 9999999999999 5566667776666 0
Q ss_pred ------------------HHHHHHHHHHHHHHhcccCCCCCcccccc-----------ccc------ccc----------
Q 016418 136 ------------------SIALLIFVPVYMQFFLVETVESAPRKDQE-----------SSG------LKK---------- 170 (390)
Q Consensus 136 ------------------~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-----------~~~------~~~---------- 170 (390)
...+..+..++..+++||+|++...+.+. ..+ ..+
T Consensus 321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~ 400 (742)
T TIGR01299 321 SFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTI 400 (742)
T ss_pred hhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHh
Confidence 00112222334456789997652111000 000 000
Q ss_pred cccc----cccccc---------------cHHHHHHhhhcCc---chhHHHHHHHHHHHHhhhHHHHHHHHHhhh----c
Q 016418 171 AVNV----LDRRYK---------------SMRDAALMVVSSP---TLRGISFVSFFYKLGMSGISAVLLFYLKAV----F 224 (390)
Q Consensus 171 ~~~~----~~~~~~---------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 224 (390)
+..+ ..+... .....++.+++.+ +.+.+++.+++..+.+++...|+|.++++. +
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~ 480 (742)
T TIGR01299 401 HQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDY 480 (742)
T ss_pred hhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000000 0011233344332 234556677778888999999999775431 0
Q ss_pred -------------------------------------CC-----C-----------------------------------
Q 016418 225 -------------------------------------GF-----N----------------------------------- 227 (390)
Q Consensus 225 -------------------------------------g~-----~----------------------------------- 227 (390)
|+ +
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 560 (742)
T TIGR01299 481 AALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTD 560 (742)
T ss_pred Hhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccc
Confidence 00 0
Q ss_pred -----------------------------c----hhH---HHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHH
Q 016418 228 -----------------------------K----NQF---SEILMMVGIGSIVSQILVLPLLNPFV----ALLASIAYAL 267 (390)
Q Consensus 228 -----------------------------~----~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (390)
. ... ..+..+..+.+.+..+++.||++||. ++++.+++.+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~l 640 (742)
T TIGR01299 561 FEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCF 640 (742)
T ss_pred hhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 0 000 11223444566677799999999998 5555666666
Q ss_pred hHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCC
Q 016418 268 FYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNC 346 (390)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~ 346 (390)
++.+.++.+..+ ..++.+++.+...+....+++|.+|++.|++++|+.+...++|.++||.++|.+.+. +...
T Consensus 641 l~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~---- 714 (742)
T TIGR01299 641 FLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAA---- 714 (742)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHH----
Confidence 666665544443 445667777778888999999999999999999999999999999999999988764 2222
Q ss_pred CchHHHHHHHHHHHHHHhhhcccc
Q 016418 347 KGFSIIVASICLMVSLSCACMLDT 370 (390)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~ 370 (390)
++++.+++.+++.++..++++
T Consensus 715 ---pf~i~a~~lll~~ll~~~LPE 735 (742)
T TIGR01299 715 ---PILFASAALACGGLLALKLPD 735 (742)
T ss_pred ---HHHHHHHHHHHHHHHHHhCCC
Confidence 445566666666655555543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-25 Score=203.50 Aligned_cols=311 Identities=17% Similarity=0.131 Sum_probs=199.6
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLI 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~ 87 (390)
++.+...++..+.+.++.....+.+|.+.++. |.++ .+.+++.+++.++..+++++.|+++||+|||+++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~s~-----~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~ 88 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADL---GLTD-----MEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW 88 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 44566777777788888888888888776444 5444 555999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------
Q 016418 88 TVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA--------------------------------- 134 (390)
Q Consensus 88 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------------------------- 134 (390)
+.+..+++.++.+++++ ++.+++.|++.|+ +.+...+....++
T Consensus 89 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 89 SIVAYSVGTGLSGLASG---VIMLTLSRFIVGM-GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999 5565556655555
Q ss_pred -----------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHH
Q 016418 135 -----------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSF 203 (390)
Q Consensus 135 -----------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (390)
..+.+..+..+......||++++++++. +++++ + ........++.++.++++|.++.......
T Consensus 165 l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (426)
T PRK12307 165 FAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKL----SGKGK-H-SQSAWSVFSLSMKGLFNRAQFPLTLCVFI 238 (426)
T ss_pred HcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhh----hcccc-c-cccchhhhhHHHHHHHhhchHHHHHHHHH
Confidence 1111111111111111233321111100 00000 0 00001112223456667777665443322
Q ss_pred H---HHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH---HHHHHHHHhhHHHHH----HHHHHHHHHHhHhccc
Q 016418 204 F---YKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGS---IVSQILVLPLLNPFV----ALLASIAYALFYGLAW 273 (390)
Q Consensus 204 ~---~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 273 (390)
. ..........++|.|+++. |.++.+.+...+..++.. .+..+++.||++||+ +.+...+..+.....+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (426)
T PRK12307 239 VLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP 317 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 2223334567889888875 888888777665544433 345588999999888 3333333333222222
Q ss_pred -chhHHHHHHHHHHH--HhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 274 -ASWVPYLSASFGVI--YVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 274 -~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
+........+++.+ .....+....++.|.+|+++||+++|+.+...++++.++|.+.|++.+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 318 QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 22222222233332 22334555677899999999999999999999999999999999999876
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=201.81 Aligned_cols=323 Identities=13% Similarity=0.052 Sum_probs=209.2
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLL 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~ 86 (390)
+++.+..+++..+++...........|.+.+|. | .+..+.|++.+++.++..+++++.|+++||+|||+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~---~-----~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~ 77 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDL---G-----LSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIA 77 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhc---C-----CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHH
Confidence 345555666666666777777777777544332 3 33466799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-----------------------------H--
Q 016418 87 ITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-----------------------------V-- 135 (390)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-----------------------------~-- 135 (390)
.+.++.+++.+++++++| ++.+++.|++.|+ +.+...+....++ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 78 GIMVLWGIASTATMFATG---PESLYLLRILVGI-AEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999 5566666665555 0
Q ss_pred --------------------HHHHHHHHHHHHHHhcccCCCCCc---ccccccc-c----ccccccccc----cccccHH
Q 016418 136 --------------------SIALLIFVPVYMQFFLVETVESAP---RKDQESS-G----LKKAVNVLD----RRYKSMR 183 (390)
Q Consensus 136 --------------------~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~-~----~~~~~~~~~----~~~~~~~ 183 (390)
.++..++..++.++++||+|++.+ +++++.. + +..+.+++. +.....+
T Consensus 154 ~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (412)
T TIGR02332 154 YILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQR 233 (412)
T ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHH
Confidence 012222223344456788765321 1110000 0 000000000 0011112
Q ss_pred HHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhh-cCCCchhHHHHHHHHH---HHHHHHHHHHHhhHHHHH--
Q 016418 184 DAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAV-FGFNKNQFSEILMMVG---IGSIVSQILVLPLLNPFV-- 257 (390)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~-- 257 (390)
+.++.++ +|.++...+..++.........+++|.|+++. .|.++.+.+.+..... +.+.+..++++||+++|+
T Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~ 312 (412)
T TIGR02332 234 SMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH 312 (412)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH
Confidence 3344444 57788888888888888888999999999873 4667677676654444 444566689999998655
Q ss_pred ---HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh
Q 016418 258 ---ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPL 333 (390)
Q Consensus 258 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l 333 (390)
......+++.+....++....+ ...+.+.+.....+.......+..|+++|+++.|+.+...++|++++|.+.|.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i 392 (412)
T TIGR02332 313 TALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGIL 392 (412)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 2222222222222222222222 122223333333344445556788999999999999999999999999999999
Q ss_pred hcccccCCC
Q 016418 334 TSWFLSTDA 342 (390)
Q Consensus 334 ~~~~~~~~~ 342 (390)
.|..++++.
T Consensus 393 ~~~~g~~~~ 401 (412)
T TIGR02332 393 KDATGSFNS 401 (412)
T ss_pred cccCCCCch
Confidence 998745555
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=198.87 Aligned_cols=303 Identities=12% Similarity=0.016 Sum_probs=183.7
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCC-cchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHH
Q 016418 12 LHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPT-CSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVS 90 (390)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~ 90 (390)
....++.+++.++...+....|.+.++. +.+. .+....+.+.+.+...++..++++++|+++||+|||+++..+.+
T Consensus 25 ~~~~~~~~~~~~d~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 101 (432)
T PRK10406 25 VGASSGNLVEWFDFYVYSFCSLYFAHIF---FPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444567788888887766666555443 2211 11212234555666777777999999999999999999999999
Q ss_pred HHHHHHHHHHhccCch-----hhHHHHHHHHHHhhcccchHHHHHHHHH------------------------HH-----
Q 016418 91 TTIVPFTLLAFNQSQE-----FVYAYYVLRTISYIISQGSIFCIAVAYA------------------------VS----- 136 (390)
Q Consensus 91 ~~~i~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------~~----- 136 (390)
+++++.++++++++.. .+..+++.|+++|+ +.|...+...+++ ..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~ 180 (432)
T PRK10406 102 MMCFGSLVIACLPGYETIGTWAPALLLLARLFQGL-SVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVV 180 (432)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHh-hhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998821 12468999999999 6677777777777 00
Q ss_pred -----------------------HHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCc
Q 016418 137 -----------------------IALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSP 193 (390)
Q Consensus 137 -----------------------~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (390)
+.+..+..++....+||++++++ + + .++..++ ++++++|
T Consensus 181 ~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~----------~-~---~~~~~~~----~~l~~~~ 242 (432)
T PRK10406 181 VVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET----------R-A---LKEAGSL----KGLWRNR 242 (432)
T ss_pred HHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH----------h-h---hcccccH----HHHHhhH
Confidence 00000000111111233221100 0 0 0011123 3455677
Q ss_pred chhHHHHHHHH-HHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHH
Q 016418 194 TLRGISFVSFF-YKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAY 265 (390)
Q Consensus 194 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~ 265 (390)
+.+...+...+ ....++...+++|.|+++.+|.+..+.+.......+... ...+++.||++||+ ......+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 322 (432)
T PRK10406 243 RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALF 322 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 76665555444 356677788999999988889988887776654443333 34589999999888 11111111
Q ss_pred HH-hH---hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHH-HHhhhhhhhhhhhccc
Q 016418 266 AL-FY---GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSI-SSLLSPLAMSPLTSWF 337 (390)
Q Consensus 266 ~~-~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~g~~~~g~l~~~~ 337 (390)
.. .. ...++.+... ...+...+.+...+....+.+|.+|++.|+++.|+.+...+. .+...|.+.+.+ +..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~ 399 (432)
T PRK10406 323 TVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSI 399 (432)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHh
Confidence 11 11 1122222222 222222333344455667889999999999999999887664 344577777744 543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-24 Score=198.77 Aligned_cols=312 Identities=15% Similarity=0.138 Sum_probs=191.8
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHH
Q 016418 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLIT 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~ 88 (390)
+......+..+++..+......+.|.+..+.+.++.++. ..........++..++..+++++.|+++||+|||+++..+
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~ 100 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLT 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHH
Confidence 445566667788888888777777755544321122221 1111112223456677889999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCchhhH--------HHHHHHHHHhhcccchHHHHHHHHH------------------------HH
Q 016418 89 VSTTIVPFTLLAFNQSQEFVY--------AYYVLRTISYIISQGSIFCIAVAYA------------------------VS 136 (390)
Q Consensus 89 ~~~~~i~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~g~~~~~~~~~i------------------------~~ 136 (390)
.++.+++.++++++++ ++ .+++.|+++|+ +.|...+....++ +.
T Consensus 101 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 101 VWMMGIATALIGLLPS---FSTIGWWAPVLLVTLRAIQGF-AVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHHh-hhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999 65 58899999999 6566666666666 00
Q ss_pred H-------------------------HHHHHH---HHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHh
Q 016418 137 I-------------------------ALLIFV---PVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALM 188 (390)
Q Consensus 137 ~-------------------------~~~~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (390)
+ .+..+. ........||++++.++++ +.+ +.+++.+.. +.
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~-----~~~----~~~~~~~~~---~~ 244 (438)
T PRK09952 177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQH-----EQA----AAKKRIPVI---EA 244 (438)
T ss_pred HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHh-----hcc----cccccCCHH---HH
Confidence 0 000001 0111112333332111100 000 000011111 23
Q ss_pred hhcCcchhHHHH-HHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHH---HHHHHHHHHHHHHHHHHhhHHHHH----HHH
Q 016418 189 VVSSPTLRGISF-VSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSE---ILMMVGIGSIVSQILVLPLLNPFV----ALL 260 (390)
Q Consensus 189 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 260 (390)
++++|+.+.... ..++.....+....+.|.|.++.+|.+...... +....++.+....++++||++||+ +.+
T Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~ 324 (438)
T PRK09952 245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGAL 324 (438)
T ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 445666555443 344455666777889999998888888764333 333334444556689999999988 222
Q ss_pred HHHHHHHhHhc---cc-chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHH-HHHHhhhhhhhhhhh
Q 016418 261 ASIAYALFYGL---AW-ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQ-SISSLLSPLAMSPLT 334 (390)
Q Consensus 261 ~~~~~~~~~~~---~~-~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~~~~~g~~~~g~l~ 334 (390)
...+....+.. .. +.+... ..++.+++.+...+..+++..|.+|++.|+++.|+.+... .+++.++|.+.|++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~ 404 (438)
T PRK09952 325 IGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALV 404 (438)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211111 12 223323 3345567777777888899999999999999999966554 489999999999998
Q ss_pred ccc
Q 016418 335 SWF 337 (390)
Q Consensus 335 ~~~ 337 (390)
+..
T Consensus 405 ~~~ 407 (438)
T PRK09952 405 TYF 407 (438)
T ss_pred Hhc
Confidence 854
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=202.67 Aligned_cols=325 Identities=14% Similarity=0.085 Sum_probs=211.2
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHH
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLL 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l 85 (390)
.+++.+...++..+.+.++.....++.|.+.++. |.++ .+.|++.+++.++..+++++.|.++||+|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~s~-----~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~ 80 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEF---GLTT-----VDAASLISAALISRWFGALMFGLWGDRYGRRLPM 80 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3445667788888889998888999999876554 5444 5559999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------
Q 016418 86 LITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------- 134 (390)
Q Consensus 86 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------- 134 (390)
..+.++.+++.++.+++++ ++.+++.|++.|+ +.+...+...+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 156 (405)
T TIGR00891 81 VTSIVLFSAGTLACGFAPG---YITMFIARLVIGI-GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVY 156 (405)
T ss_pred HHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHh-hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999 5566666666655
Q ss_pred ---------------HHHHHHHHHHHHHHHhcccCCCCCccccccccccc--cc-ccccccccccHHHH---HHhh-hcC
Q 016418 135 ---------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLK--KA-VNVLDRRYKSMRDA---ALMV-VSS 192 (390)
Q Consensus 135 ---------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~---~~~~-~~~ 192 (390)
..+.+..+..+......||+++++++++.++..++ ++ .+++...+...++. .+.. .++
T Consensus 157 ~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (405)
T TIGR00891 157 SLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKR 236 (405)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhh
Confidence 11111111222233345665432211111000000 00 00000000001111 1111 111
Q ss_pred c-chhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH---HHHHHHHHhhHHHHH----HHHHHHH
Q 016418 193 P-TLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGS---IVSQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 193 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~ 264 (390)
+ .+........+..........++|.|+++.+|+++.+.+.+....++.. .+..+++.||++||+ +.....+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~ 316 (405)
T TIGR00891 237 WPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQL 316 (405)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHH
Confidence 1 1222233333334444566678899998888999998888765554443 455689999999888 2222211
Q ss_pred -HHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 265 -YALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 265 -~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
........++.+... ..++.+.+.+...+....+++|..|+++||+++|+.+...+++..++|.+.|.+.|+.+.++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~ 396 (405)
T TIGR00891 317 LIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGT 396 (405)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 222223333444433 335556666666777788999999999999999999999999999999999999998733544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-24 Score=194.29 Aligned_cols=298 Identities=17% Similarity=0.144 Sum_probs=203.7
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLL 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~ 86 (390)
.+|.+...........+......|.+|.+.++. |.++ .+.|++.+.+.++..+++++.|+++||+|||+++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~---~~s~-----~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~ 77 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDL---NVRE-----GAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVIL 77 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh---CCCH-----HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHH
Confidence 455666666666677777788889999887554 4443 56699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------
Q 016418 87 ITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------- 134 (390)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------- 134 (390)
.+.+...++.+...++++ ++.+++.|++.|+ +.+...+....+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 153 (394)
T PRK11652 78 VGMSIFILGTLVALFAHS---LTVLIAASAIQGL-GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGG 153 (394)
T ss_pred HHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999 4344433333332
Q ss_pred -------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHH
Q 016418 135 -------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFV 201 (390)
Q Consensus 135 -------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (390)
+.++...+..+...+..||+++.++++ .+.++.++..+++|+++...+.
T Consensus 154 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 215 (394)
T PRK11652 154 LLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADARR------------------TRVLASYRTLLSNRRFNCYLLM 215 (394)
T ss_pred HHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccch------------------hHHHHHHHHHHcChHHHHHHHH
Confidence 122222222233334556643321110 0134445667778888776666
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHHHHHHH---hHhc-
Q 016418 202 SFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFV------ALLASIAYAL---FYGL- 271 (390)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~- 271 (390)
.+........+....+.++++.+|.++.+.+++.....+.. +.+..+.+|+.+|. .......+.+ ....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (394)
T PRK11652 216 LIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAA-FFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWF 294 (394)
T ss_pred HHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666777788888888999988888765544333 33334444444332 2222222211 1111
Q ss_pred -ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 272 -AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 272 -~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
..+.+... ...+.+++.+...|...+...+..| +++|++.++.+....+|..+++.+.+.+.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 295 GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 12334443 4577788888889999999999887 6889999999999999999999998887653
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=200.93 Aligned_cols=311 Identities=17% Similarity=0.125 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHH
Q 016418 19 CVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTL 98 (390)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~ 98 (390)
+..........+..|.+.++. |.++ .+.|++.+++.++..+++++.|+++||+|||+++..+.++..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~---g~s~-----~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 76 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLVEEI---GLSK-----TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF 76 (379)
T ss_pred hHHHHhHHhhhhhhHHHHHHh---CCCH-----hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence 344455555666677655433 4443 55699999999999999999999999999999999999999999999
Q ss_pred HHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------------------
Q 016418 99 LAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------------------- 134 (390)
Q Consensus 99 ~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------------------- 134 (390)
.+++++ ++.+++.|++.|+ +.+...+...+++
T Consensus 77 ~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 152 (379)
T TIGR00881 77 FGFSTS---LWVMAALWALNGI-FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWV 152 (379)
T ss_pred HHHhhh---HHHHHHHHHHHHh-hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhH
Confidence 999999 9999999999999 5455555565555
Q ss_pred --HHHHHHHHHHHHHHHhcccCCCCCccccccccccc---ccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHh
Q 016418 135 --VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLK---KAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGM 209 (390)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (390)
+.+++.++..+..++..||++++++.++.++..++ ++++++.++....++..+.++++|.++...+..++.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (379)
T TIGR00881 153 FIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVR 232 (379)
T ss_pred HHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 22223333334444556665443221111111000 0000011111223334566778999998888888888888
Q ss_pred hhHHHHHHHHHhhhcCCCchhHHHHHHHHHHH---HHHHHHHHHhhHHH-HH---HHHH---HHHHHHhHhc--ccchhH
Q 016418 210 SGISAVLLFYLKAVFGFNKNQFSEILMMVGIG---SIVSQILVLPLLNP-FV---ALLA---SIAYALFYGL--AWASWV 277 (390)
Q Consensus 210 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~-~~---~~~~---~~~~~~~~~~--~~~~~~ 277 (390)
.....+.|.|+++.+|+++.+.+......++. +.+..+++.||..+ |+ .... .......... ..+.+.
T Consensus 233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (379)
T TIGR00881 233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLM 312 (379)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 88899999999988899998888776655544 33455788887533 22 1111 1112222222 122222
Q ss_pred H-HHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 278 P-YLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 278 ~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
. ...+..|.......+....+..|..|+++||++.|+.+...+++..++|.+.|.+.|.. +++.
T Consensus 313 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~ 377 (379)
T TIGR00881 313 DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF-GWAG 377 (379)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh-cccc
Confidence 2 23445555555555666778899999999999999999999999999999999999987 6654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-24 Score=193.87 Aligned_cols=302 Identities=16% Similarity=0.165 Sum_probs=201.3
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLI 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~ 87 (390)
++.++.+....+....+.....|.+|.+.+|. |.++ .+.|++.+.+.++..++++++|+++||+|||+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~s~-----~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 73 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTELAHDV---GISI-----PAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLF 73 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHHHHHHc---CCCH-----HHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 45677788888888999899999999887554 5443 556999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------
Q 016418 88 TVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA--------------------------------- 134 (390)
Q Consensus 88 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------------------------- 134 (390)
+.++.+++.++++++++ ++.+++.|++.|+ +.+...+....++
T Consensus 74 ~~~~~~~~~~l~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 149 (382)
T PRK10091 74 LVALCVIGNAMFTLSSS---YLMLAIGRLVSGF-PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY 149 (382)
T ss_pred HHHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999 9999999999999 5455444444443
Q ss_pred ------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHH
Q 016418 135 ------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVS 202 (390)
Q Consensus 135 ------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (390)
+.+++..+..+...+.+||.+++++ . +.++.++ ..+++..+......
T Consensus 150 l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~--~------------------~~~~~~~-~~~~~~~~~~~~~~ 208 (382)
T PRK10091 150 LSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAK--G------------------GLREQFH-FLRSPAPWLIFAAT 208 (382)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc--c------------------CHHHHHH-HhcChHHHHHHHHH
Confidence 2233333333334445666432110 0 0111122 23456666555554
Q ss_pred HHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhc-ccc
Q 016418 203 FFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGL-AWA 274 (390)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~ 274 (390)
++..........+.+.++++.+|+++.+.+.+....++... +..+++.||+++|+ +..+.+++.+.... .++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (382)
T PRK10091 209 MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGM 288 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444555677778887779999988888766655444 45578889998877 33444444433332 333
Q ss_pred hhHHH-HHHHHHHHHhhhHHHHH-HHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 275 SWVPY-LSASFGVIYVLVKPSTY-AIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 275 ~~~~~-~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
.+... ..++.+.+.....+... ....+..|++.++.+. .+....+|+.+||.+.|.+.|...+++..+
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~ 358 (382)
T PRK10091 289 KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVA 358 (382)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHH
Confidence 33333 33444555444344333 3444545555555543 466788999999999999999754666533
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=200.94 Aligned_cols=294 Identities=20% Similarity=0.280 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHH
Q 016418 15 LLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIV 94 (390)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i 94 (390)
++..++..++.+...+.+|.++.+++ |.++ .+.|++.+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~s~-----~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~ 74 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEEL--GLSP-----SQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFAL 74 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCS--TTTS-----HCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc--CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhh
Confidence 56778888999999999995443433 4344 5569999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH----------------------------------------
Q 016418 95 PFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------------- 134 (390)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------------- 134 (390)
+.++..++++ .+.+++.|++.|+ +.+...+...+++
T Consensus 75 ~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~ 150 (352)
T PF07690_consen 75 GSLLLAFASN---FWLLLIARFLLGI-GSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW 150 (352)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred HHHHhhhhhh---HHHHhhhcccccc-ccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence 9666667677 7899999999999 5567777777777
Q ss_pred -----HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHh
Q 016418 135 -----VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGM 209 (390)
Q Consensus 135 -----~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (390)
+.+++.++..++.....++++++++++++++++ .+.+++.++.++.++++|.+|......++..+..
T Consensus 151 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (352)
T PF07690_consen 151 RWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE--------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVF 222 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT----------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhHhhhhhhcccccccccccccc--------cccccccccccccccccchhhhhhhhhhHHHHHH
Confidence 333344443333334555554443332211110 0011122223455666777775666666666677
Q ss_pred hhHHHHHHHHHhhhcCCC-chhHHHHHHHHHHHH---HHHHHHHHhhHHHHH----HHHHHHHHHHhHh---cccch-hH
Q 016418 210 SGISAVLLFYLKAVFGFN-KNQFSEILMMVGIGS---IVSQILVLPLLNPFV----ALLASIAYALFYG---LAWAS-WV 277 (390)
Q Consensus 210 ~~~~~~~~~~~~~~~g~~-~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~-~~ 277 (390)
.....+.|.|+++.+|++ ..+.+.+....++.+ .+..+.+.||+++++ ......+....+. ..++. +.
T Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (352)
T PF07690_consen 223 SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWL 302 (352)
T ss_dssp HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHH
T ss_pred HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 789999999988888999 788887776666655 345578889887655 2222222222222 22222 33
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhh
Q 016418 278 PYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSP 327 (390)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~ 327 (390)
....++.|++.+...+...++..+..|++++|++.|+.+...+++..+||
T Consensus 303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34667789999999999999999999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-24 Score=194.39 Aligned_cols=324 Identities=14% Similarity=0.149 Sum_probs=213.6
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLI 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~ 87 (390)
+|++...+++.++...+.+...+.++.+.++. |.++ .+.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---g~s~-----~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~ 83 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKAL---GLSP-----QQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMI 83 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHHhHHHHHHHh---CCCH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 67888889999999999998888888887554 4443 556999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH---h-ccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------HHH-HH--
Q 016418 88 TVSTTIVPFTLLA---F-NQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------VSI-AL-- 139 (390)
Q Consensus 88 ~~~~~~i~~~~~~---~-~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------~~~-~~-- 139 (390)
+.++.+++.+++. . .++ ++.+++.|++.|+ +.+...+...+++ +.. ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~i~G~-g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~ 159 (402)
T TIGR00897 84 GLLLWCVGHAAFIVFGLGHAN---YPLILLFYGIRGL-GYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGS 159 (402)
T ss_pred HHHHHHHHHHHHHHHhccCcc---HHHHHHHHHHHHc-chHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888876543 3 246 7888899999999 5444444433333 000 00
Q ss_pred ----------------------HHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhH
Q 016418 140 ----------------------LIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRG 197 (390)
Q Consensus 140 ----------------------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (390)
..+..++..+..+|.+++++++ ++ ++..+.++.++.++|+|+++.
T Consensus 160 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~ 226 (402)
T TIGR00897 160 YYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ------TR-------EKFSELGKAATILFTNPNVLL 226 (402)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc------CC-------cchhhHHHHHHHHHcChhHHH
Confidence 0011111122233321111000 00 001123344566788999988
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHH---HHHHHHHHHHHhhHHHHH-H----HHHHHHHHHhH
Q 016418 198 ISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVG---IGSIVSQILVLPLLNPFV-A----LLASIAYALFY 269 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~ 269 (390)
..+..++.........++.|.|.++ +|+++.+.+.+..... ..+.+..+++.||++||+ . .+...+....+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l 305 (402)
T TIGR00897 227 GGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLAL 305 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 8888887777788888999999876 6999888777655443 444456689999998876 1 11122221221
Q ss_pred hc-----ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCC
Q 016418 270 GL-----AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAP 343 (390)
Q Consensus 270 ~~-----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~ 343 (390)
.. .++.+..+ ..++.|++.+...+. .....+.. +++||++.|+.+...++++.++|.+.|.++|.. ++..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~-g~~~- 381 (402)
T TIGR00897 306 YYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF-GAIG- 381 (402)
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHH-
Confidence 11 22333333 456667766665443 45556654 478999999999999999999999999999976 4433
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhc
Q 016418 344 FNCKGFSIIVASICLMVSLSCACM 367 (390)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~ 367 (390)
.+.+.+++.+++.+...+
T Consensus 382 ------~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 382 ------VVWIFAALYVVSAFLTAF 399 (402)
T ss_pred ------HHHHHHHHHHHHHHHHHH
Confidence 334455555555444443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-24 Score=192.74 Aligned_cols=318 Identities=9% Similarity=0.033 Sum_probs=219.8
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHH---
Q 016418 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLL--- 85 (390)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l--- 85 (390)
+....+....+....+.++..|.+|.|.++. |.+ ..++|++.+++.+...++++++|+++||+|||+..
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~~p~l~~~l~~~---g~s-----~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 75 (382)
T TIGR00902 4 QPFRWLALGFFGYFCAYGIFLPFFPAWLKGI---GLG-----EEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRL 75 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3445677788888899999999999998654 444 46679999999999999999999999999985433
Q ss_pred -HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH------------------------------
Q 016418 86 -LITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------ 134 (390)
Q Consensus 86 -~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------ 134 (390)
..+..+..+ .....+++ ++.+++.|.++|.+. +...|...++.
T Consensus 76 ~~~~~~l~~~--~~~~~~~~---~~~l~~~~~l~~~~~-~~~~p~~~al~~~~~~~~~~~~g~~~~~~slG~~~g~~l~g 149 (382)
T TIGR00902 76 LALASAIFAA--AFSAGAHN---AWLLFIAIGLFALFF-SAGMPIGDALANTWQKQFGLDYGKVRLIGSAAFIIGSALFG 149 (382)
T ss_pred HHHHHHHHHH--HHHHhhhh---HHHHHHHHHHHHHHH-ccchhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHH
Confidence 222222222 23446778 999999999888844 33455555554
Q ss_pred ----------HHHHHH-HHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHH
Q 016418 135 ----------VSIALL-IFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSF 203 (390)
Q Consensus 135 ----------~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (390)
...+.. ........+..+|+++++++++ ++ + .+ + .+.++.++|+|+++...+..+
T Consensus 150 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~---~~---~-~~~~~~~l~~~~~~~~l~~~~ 215 (382)
T TIGR00902 150 GLIGMFDEQNILAILTAGLAFMLIGFLIKPTIPPKDAIP-----ED--E---SQ---G-DSAFIALLKNPMNLRFLAAVC 215 (382)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHcCCCCCCCcccc-----cc--c---cc---c-chhHHHHHcChHHHHHHHHHH
Confidence 111111 1111122223343322111110 00 0 00 1 112355678999999999899
Q ss_pred HHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhHhcccchh
Q 016418 204 FYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFYGLAWASW 276 (390)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 276 (390)
+.........++.|.|+++ .|.++.+.|.++....+...+ ..+.+.||+++|+ +.+...+....+.+.++.+
T Consensus 216 l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 294 (382)
T TIGR00902 216 LIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFP 294 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence 8888999999999999987 699999999887765444443 3345556666666 6666777777777788877
Q ss_pred HHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHH-HHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHH
Q 016418 277 VPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAG-VQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVA 354 (390)
Q Consensus 277 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 354 (390)
..+ ...+.++..+...+....++++. |++++++.+++++. ...+|..+||.++|.++|+. +. . .+...
T Consensus 295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-g~-~-------~~~~~ 364 (382)
T TIGR00902 295 LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-GA-G-------TFVFM 364 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-H-------HHHHH
Confidence 766 67899999999999999999988 98999999999874 56799999999999999987 43 2 34555
Q ss_pred HHHHHHHHHhh
Q 016418 355 SICLMVSLSCA 365 (390)
Q Consensus 355 ~~~~~~~~~~~ 365 (390)
+.+.+++.++.
T Consensus 365 ~~~~~~~~~~~ 375 (382)
T TIGR00902 365 AIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-24 Score=194.96 Aligned_cols=305 Identities=11% Similarity=0.080 Sum_probs=207.8
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHH
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLL 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l 85 (390)
+|+|..+..++..++.........+.+|.+.++. |.+ ..+.|++.+.+.++..+++++.|+++||+|||+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~---~~s-----~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~ 75 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYF---NLP-----VSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL 75 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh---CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3445555666677777777777788888876543 444 35669999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------
Q 016418 86 LITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------- 134 (390)
Q Consensus 86 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------- 134 (390)
..+.++..++.++.+++++ ++.+++.|+++|+ +.+...+...+++
T Consensus 76 ~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~G~-~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 151 (394)
T PRK03699 76 IFGFALMILAVAGLMFSHS---LALFSIAMFVLGV-VSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA 151 (394)
T ss_pred HHHHHHHHHHHHHHHHcch---HHHHHHHHHHHHH-hhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999998 4344444433333
Q ss_pred ---------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHH
Q 016418 135 ---------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGIS 199 (390)
Q Consensus 135 ---------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (390)
+.+++.++..++. + .++.|+.+++++ ++ ++ . ..++ ..++.++...
T Consensus 152 ~~l~~~~~gw~~~f~~~~~~~~~~~~~~-~-~~~~p~~~~~~~----~~---~~--~----~~~~-----~~~~~~~~~~ 211 (394)
T PRK03699 152 AYLLARSIEWYWVYACIGLVYVAIFILT-L-FSEFPALGKHAP----KA---DK--P----VAKE-----KWGIGVLFLA 211 (394)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHH-H-hcCCccccccCc----cc---cC--c----cccc-----cCChHHHHHH
Confidence 1111111111111 1 122221111100 00 00 0 0000 1145566666
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHH---HHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcc
Q 016418 200 FVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMV---GIGSIVSQILVLPLLNPFV----ALLASIAYALFYGLA 272 (390)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 272 (390)
+..++..........+.|.|+++.+|+++.+.+.+.+.. ...+.+..+.+.||+++|+ ......+....+...
T Consensus 212 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~ 291 (394)
T PRK03699 212 IAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT 291 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc
Confidence 667777777778889999999988899998888776543 3444556688999999888 333333334444444
Q ss_pred cchhHH-HHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 273 WASWVP-YLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 273 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
++.+.. ...+..|++.+..++...+...+..| +++++..|......++|..++|.+.|.+.|.. +++..+
T Consensus 292 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~-g~~~~~ 362 (394)
T PRK03699 292 DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF-GLQAAL 362 (394)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-Cchhhh
Confidence 444333 35567787777788888888888776 55678889999999999999999999999987 665544
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-24 Score=201.56 Aligned_cols=315 Identities=12% Similarity=0.061 Sum_probs=228.5
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLL 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~ 86 (390)
++..+..+.+..++..++..+....+|.+.++. |.+. .+.+|+.+.+.++...+.+++|+++||+|||++++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l---~~s~-----~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~ 75 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTL---GASG-----NELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLM 75 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 445677788889999999999999999887554 4443 44599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------
Q 016418 87 ITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------- 134 (390)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------- 134 (390)
.+.++..++.+++++++| ++.++++|+++|+ +.+...+.....+
T Consensus 76 ~~~~~~~~~~~~~~~a~~---~~~li~~r~l~G~-g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lg 151 (495)
T PRK14995 76 LGGTLFGLASLAAAFSPT---ASWLIATRALLAI-GAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVG 151 (495)
T ss_pred HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999 5555555444333
Q ss_pred --------------HHHHHHHHHHHHHHHhcccCCCCCccccccccc----------------c-cccccc---------
Q 016418 135 --------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSG----------------L-KKAVNV--------- 174 (390)
Q Consensus 135 --------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~----------------~-~~~~~~--------- 174 (390)
+...+.++..++..+.+||++++++++. +... + .+...+
T Consensus 152 g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~-d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 230 (495)
T PRK14995 152 GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPL-NLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLL 230 (495)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-ChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 2222333344445556676543221111 1000 0 000000
Q ss_pred ------------cccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH
Q 016418 175 ------------LDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGS 242 (390)
Q Consensus 175 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 242 (390)
+.+.+++..+ ..++|+|.+....+..++..........++|.|+++.+|.++.+.|......++..
T Consensus 231 ~~~~~l~~f~~~e~~~~~p~~~--~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~ 308 (495)
T PRK14995 231 TGALLLGLFIRTQLAASRPMID--MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVAS 308 (495)
T ss_pred HHHHHHHHHHHHHhcCCCCCcC--HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0000111111 24567888888888888887788888889999999999999999998876555443
Q ss_pred H---HHHHHHHhhHHHHH----HHHHHHHHHHhHhc---ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhH
Q 016418 243 I---VSQILVLPLLNPFV----ALLASIAYALFYGL---AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKA 311 (390)
Q Consensus 243 ~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 311 (390)
. ...+.+.||+++|. +..+..++...+.. .++.+..+ ..++.|++.+...+.......+..|++++|.+
T Consensus 309 ~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~ 388 (495)
T PRK14995 309 GFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAA 388 (495)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchH
Confidence 3 45578999999877 44444444443322 23344333 56778999999888888889999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 312 QGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 312 ~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
.++.+...++|+.+|+.+.|.+++.
T Consensus 389 ~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 389 GAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=197.54 Aligned_cols=336 Identities=11% Similarity=0.021 Sum_probs=203.8
Q ss_pred cccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchH
Q 016418 5 FWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPL 84 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~ 84 (390)
..+++.++.+....++..++.+...|.+|.++++++ |. +..+.|++.+++.++..++++++|+++||+|||++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~-----s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~ 78 (420)
T PRK09528 6 YLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDIN--GL-----SGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKH 78 (420)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence 345677888888899999999999999999987643 43 34667999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---hccCc--hhhHHHHHHHHHHhhcccchHHHHHHHH--------------------------
Q 016418 85 LLITVSTTIVPFTLLA---FNQSQ--EFVYAYYVLRTISYIISQGSIFCIAVAY-------------------------- 133 (390)
Q Consensus 85 l~~~~~~~~i~~~~~~---~~~~~--~~~~~l~~~r~l~G~~~~g~~~~~~~~~-------------------------- 133 (390)
++++..+..+...... .++.. ......++.++..|... ....+....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~ 157 (420)
T PRK09528 79 LLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGF-LAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALC 157 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHH
Confidence 8876655444322111 11100 00111222233222200 0000000010
Q ss_pred ------H----------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhH
Q 016418 134 ------A----------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRG 197 (390)
Q Consensus 134 ------i----------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (390)
+ ..+++.++..+..++..||++++++.++ + +++ + +++.+.++ .+..+|+|.++.
T Consensus 158 ~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~----~--~~~~~~~~-~~~~l~~~~~~~ 227 (420)
T PRK09528 158 AFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN-A--LGA----N--ASAVSLKD-ALALLKLPKFWF 227 (420)
T ss_pred HHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc-c--hhc----c--cccccHHH-HHHHccCCCeEe
Confidence 0 2222222322233222333222111000 0 000 0 01112222 345667888877
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhc---CCCchhHHHHHHHHHH---HHHHHHHHHHhhHHHHH----HHHHHHHHHH
Q 016418 198 ISFVSFFYKLGMSGISAVLLFYLKAVF---GFNKNQFSEILMMVGI---GSIVSQILVLPLLNPFV----ALLASIAYAL 267 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (390)
+.+..+.............|.|+.+.+ +.+..+.|.+.++..+ .+.+..+++.||+++|+ +.++.+++..
T Consensus 228 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~ 307 (420)
T PRK09528 228 LVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRII 307 (420)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 666665555555556667777776543 4555666776655443 34456689999999988 4555556666
Q ss_pred hHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHH-HHHHHHHHHhhhhhhhhhhhcccccCCCCCC
Q 016418 268 FYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGF-IAGVQSISSLLSPLAMSPLTSWFLSTDAPFN 345 (390)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~ 345 (390)
+..+.++++..+ ...+.+.+.+...+....++.+..|++.+++..+. .+....+|..++|.+.|++.|.. +++..
T Consensus 308 l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~~-- 384 (420)
T PRK09528 308 GSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQGT-- 384 (420)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-CchHH--
Confidence 677777777655 45666777777777777888999999999988766 67778899999999999999987 65553
Q ss_pred CCchHHHHHHHHHHHHHHhhh
Q 016418 346 CKGFSIIVASICLMVSLSCAC 366 (390)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~ 366 (390)
+.+.+++.++...+.+
T Consensus 385 -----f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 385 -----YLILGGIVLLFTLISV 400 (420)
T ss_pred -----HHHHHHHHHHHHHHHH
Confidence 3444544444443333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-25 Score=203.30 Aligned_cols=316 Identities=10% Similarity=-0.022 Sum_probs=202.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhc--cCchhhHHHHHHHHHHhhccc
Q 016418 46 TCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFN--QSQEFVYAYYVLRTISYIISQ 123 (390)
Q Consensus 46 ~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~ 123 (390)
+.+.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++.++ .+ ++.+++.|+++|+ +.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~~~G~-~~ 145 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG---IALVVFCRVIQGL-AQ 145 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHH-hc
Confidence 456777888999999999999999999999999999999999999998888776543 55 7889999999999 66
Q ss_pred chHHHHHHHHH----------------------------------------------HHHHHHHHHHHHHHHhcccCCCC
Q 016418 124 GSIFCIAVAYA----------------------------------------------VSIALLIFVPVYMQFFLVETVES 157 (390)
Q Consensus 124 g~~~~~~~~~i----------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~ 157 (390)
+...+....++ +.+++.++..++.+...+|+|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~ 225 (465)
T TIGR00894 146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI 225 (465)
T ss_pred ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc
Confidence 77777776666 22333333333333445555433
Q ss_pred CcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHH
Q 016418 158 APRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMM 237 (390)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 237 (390)
+++.++++.+..++..+..++..+.+..++.++++|.++...+..++..........++|.|+++.+|.+..+.++..+.
T Consensus 226 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~ 305 (465)
T TIGR00894 226 HPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSL 305 (465)
T ss_pred CCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHH
Confidence 22211111000000000000000111224667789999999999999999999999999999999889999888887654
Q ss_pred HHH---HHHHHHHHHHhhHHHHH------------HHHHH--HHHHHhHhc-ccchhHHH-HHHHHHHHHhhhHHHHHHH
Q 016418 238 VGI---GSIVSQILVLPLLNPFV------------ALLAS--IAYALFYGL-AWASWVPY-LSASFGVIYVLVKPSTYAI 298 (390)
Q Consensus 238 ~~~---~~~~~~~~~~~~~~~~~------------~~~~~--~~~~~~~~~-~~~~~~~~-~~~~~g~~~~~~~~~~~~~ 298 (390)
..+ .+.+..+++.||..+|+ +.... .+..+.... ..+.+..+ ...+.+.+.+...+.....
T Consensus 306 ~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 385 (465)
T TIGR00894 306 PYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLIN 385 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 443 33455688999876543 11110 111111112 22222222 2333344444445555556
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhccccc
Q 016418 299 ISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTE 371 (390)
Q Consensus 299 ~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
..+..| +.+|.+.|+.+....++..++|.+.|.+.+.. +. ..+. ..+.+.++..+++.++.....+.
T Consensus 386 ~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~-~~-~~~~---~~f~~~~~~~~i~~i~~~~~~~~ 452 (465)
T TIGR00894 386 SLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQD-SK-NVWL---IVFLIMAFVNILCVIFYLIFGSA 452 (465)
T ss_pred hhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCC-Cc-hHHH---HHHHHHHHHHHHHHHHeeeeecc
Confidence 667776 58999999999999999999999999988742 11 1111 14556666666666555544433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=191.53 Aligned_cols=292 Identities=15% Similarity=0.045 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHH
Q 016418 17 PLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPF 96 (390)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~ 96 (390)
..+...++..+..|.+|.+.++. +.+. ...++..+++.++..++++++|+++||+|||++++.+.++..++.
T Consensus 24 ~~~~~~~~~~~~~p~l~~i~~~~---~~~~-----~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 95 (413)
T PRK15403 24 YDFAAYLTTDLIQPGIINVVRDF---NADV-----SLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLAC 95 (413)
T ss_pred HHHHHHHHHHhhccCHHHHHHHh---CCCH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHH
Confidence 34444556677889999876544 4333 555888999999999999999999999999999999999999999
Q ss_pred HHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH------------------------------------------
Q 016418 97 TLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------------------ 134 (390)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------------------ 134 (390)
+++.++++ ++.+++.|+++|+ +.+...+...+++
T Consensus 96 ~~~~~a~~---~~~l~~~r~l~Gi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~ 171 (413)
T PRK15403 96 AATLFTTS---MTQFLIARFIQGT-SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKV 171 (413)
T ss_pred HHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999 9999999999999 4444333333333
Q ss_pred ---HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhh
Q 016418 135 ---VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSG 211 (390)
Q Consensus 135 ---~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (390)
+.+++.++..+..++.+||++++++++. ...+..+.++.++|||.++...+..++.......
T Consensus 172 ~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~ 236 (413)
T PRK15403 172 LFAIIAVMGLIAFVGLLLAMPETVKRGAVPF---------------SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMS 236 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccCCCC---------------ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 2233333333333455677543211100 0012233456677899999888887777777777
Q ss_pred HHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHH----HHHHHhhHHHHH---HHHHHHHHHHhHh-----cccchhHH-
Q 016418 212 ISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVS----QILVLPLLNPFV---ALLASIAYALFYG-----LAWASWVP- 278 (390)
Q Consensus 212 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~- 278 (390)
+..+.|.++++.+|.++.+.++..........+. ..+..|+.++|. ......++..+.. ..++.+..
T Consensus 237 ~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~ 316 (413)
T PRK15403 237 WVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSV 316 (413)
T ss_pred HHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHH
Confidence 8888899999998999999888764443333322 222334333333 1111222222111 12222222
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 279 YLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
...++.+.+.+...|...+..-.. .+..+|++.++.+.....+...++...|++.+.
T Consensus 317 ~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 317 LGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355667888888877777533221 223479999999999999999999999998876
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-24 Score=198.83 Aligned_cols=313 Identities=13% Similarity=0.095 Sum_probs=225.4
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHH
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITV 89 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~ 89 (390)
.+..+..+.++..++..+..+.+|.+.++. |.+. .+.|++.+.+.++..++.++.|+++||+|||+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---g~s~-----~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 74 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDL---GSSL-----SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIST 74 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCh-----hhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH
Confidence 345667788888899899999999887554 5443 44599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-----------------------------------
Q 016418 90 STTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA----------------------------------- 134 (390)
Q Consensus 90 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i----------------------------------- 134 (390)
++..++.++++++++ ++.+++.|+++|+ +.+...+...+++
T Consensus 75 ~~~~~~~~~~~~~~~---~~~l~~~~~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 75 FAFTLGSLLCGVAPN---LELMIIFRVIQGF-GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred HHHHHHHHHHhCcCC---HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 999999999999999 9999999999999 5566666666666
Q ss_pred ----------HHHHHHHHHHHHHHHhcccCCCCCcccccc------------------cccccccccc------------
Q 016418 135 ----------VSIALLIFVPVYMQFFLVETVESAPRKDQE------------------SSGLKKAVNV------------ 174 (390)
Q Consensus 135 ----------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~------------------~~~~~~~~~~------------ 174 (390)
+.+.+.++..+...+..||++++++++.+. +.+++....+
T Consensus 151 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (485)
T TIGR00711 151 ENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLV 230 (485)
T ss_pred cCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Confidence 222233333344445566644322211100 0000000000
Q ss_pred --------cccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH---H
Q 016418 175 --------LDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGS---I 243 (390)
Q Consensus 175 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~---~ 243 (390)
+.+++++..+ ..++++|+++...+..++..+.......++|.|+++.+|.++.+.+......++.. .
T Consensus 231 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 308 (485)
T TIGR00711 231 AIIAFVVWELTDDNPLVD--LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSS 308 (485)
T ss_pred HHHHHHHHHHcCCCCccC--HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000111111 23567888888888888888888888899999999989999999888876555433 3
Q ss_pred HHHHHHHhhHHHHH----HHHHHHHHHHhHhc--c--cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHH
Q 016418 244 VSQILVLPLLNPFV----ALLASIAYALFYGL--A--WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGF 314 (390)
Q Consensus 244 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~--~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 314 (390)
+..+++.||++||+ +....+++...+.. . .+.+... ..++.|++.+...+.......+..|++++|++.|+
T Consensus 309 ~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~ 388 (485)
T TIGR00711 309 PIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSL 388 (485)
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHH
Confidence 45688899999887 44445555544442 1 1233333 45677888888777777778888999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhcc
Q 016418 315 IAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 315 ~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
.+....+|+.+|+.+.|.+.++
T Consensus 389 ~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 389 SNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-23 Score=186.88 Aligned_cols=298 Identities=14% Similarity=0.101 Sum_probs=192.8
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHH
Q 016418 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLIT 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~ 88 (390)
|-+.......+....+.....+.+|.+.++. |.++ .+.++..+.+.++..+++++.|+++||+|||+++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~---~~s~-----~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~ 74 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADL---NASE-----AQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG 74 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---CCCH-----HHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence 4445566677777888888889999887654 4443 5569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH----------------------------------
Q 016418 89 VSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------- 134 (390)
Q Consensus 89 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------- 134 (390)
.+...++..+..++++ ++.+++.|+++|+ +.+...+...+++
T Consensus 75 ~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 75 AALFIIASLLCSLAET---SSLFLAGRFLQGI-GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 8999999999999 5455555555555
Q ss_pred -----------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHH
Q 016418 135 -----------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSF 203 (390)
Q Consensus 135 -----------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (390)
+.+.+..+..++....+||+++++++++ . +..+..+..+++|+++...+...
T Consensus 151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~ 213 (392)
T PRK10473 151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAA------S-----------SKPRENSESLLNRFFLSRLVITT 213 (392)
T ss_pred HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCc------c-----------chHHHHHHHHhCHHHHHHHHHHH
Confidence 2222233333334455666543211100 0 00111233456777666555555
Q ss_pred HHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH---HHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchh
Q 016418 204 FYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGS---IVSQILVLPLLNPFV----ALLASIAYALFYGLAWASW 276 (390)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 276 (390)
+..........+.|.+.++.+|+++.+.+.+....++.. ....+++.||++||+ +.....++.+.+...++.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (392)
T PRK10473 214 LSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHA 293 (392)
T ss_pred HHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544445556667788888888999988887766555443 345578899999888 4444444444444444433
Q ss_pred HHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 016418 277 VPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTD 341 (390)
Q Consensus 277 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~ 341 (390)
... ...+.+.+.+...+.. ...+..|.++|+ |......++++.+|+.+++++.++. ++.
T Consensus 294 ~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~-g~~ 353 (392)
T PRK10473 294 VSLFGITLICAGFSVGFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL-GIS 353 (392)
T ss_pred HHHHHHHHHHHHHHHHhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh-ccc
Confidence 222 2333344444433332 334445544443 4444555677788888888888876 543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-23 Score=187.33 Aligned_cols=298 Identities=15% Similarity=0.110 Sum_probs=208.5
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLL 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~ 86 (390)
+++....+....++..++..+..|.+|.+.++. |.++ .+.|++.+.+.++..++++++|+++||+|||+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---g~s~-----~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 74 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAFPEIAADL---STPA-----SIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLL 74 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccHHHHHHHh---CCCH-----HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHH
Confidence 445555666666777788889999999887554 5443 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------
Q 016418 87 ITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------- 134 (390)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------- 134 (390)
.+.++..++.+...++++ ++.+++.|++.|+ +.+...+...+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 150 (385)
T TIGR00710 75 LGLFIFALSSLGLALSNN---IETLLVLRFVQAF-GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG 150 (385)
T ss_pred HHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHc-chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999 5566666666655
Q ss_pred -------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHH
Q 016418 135 -------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFV 201 (390)
Q Consensus 135 -------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (390)
+.++...+..+..++..||+++++++++ .++..+.++..+++|+++...+.
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 214 (385)
T TIGR00710 151 YILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQ----------------ISTYFETFLLLLKSKMFWGYALI 214 (385)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCC----------------HHHHHHHHHHHHcCchhHHHHHH
Confidence 2223333333334445565443221100 00112334566778888887777
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH---HHHHHHHHhhHHHHH----HHHHHHHHHHhHhcc--
Q 016418 202 SFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGS---IVSQILVLPLLNPFV----ALLASIAYALFYGLA-- 272 (390)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-- 272 (390)
..+..........+.|.++++.+|.++.+.+.+....++.. .+..+++.||+++|+ +.....++...+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (385)
T TIGR00710 215 YGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI 294 (385)
T ss_pred HHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666667777778888888888999998888776555443 345578899998887 333333333333221
Q ss_pred -c-c-hhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh
Q 016418 273 -W-A-SWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPL 333 (390)
Q Consensus 273 -~-~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l 333 (390)
. + .+... ...+.+++.+...+.......|..| +++|++.++.+.....++.+.+.+.+.+
T Consensus 295 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 295 LGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1 22222 3456778888888888888888877 6899999999988876555555555533
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=202.51 Aligned_cols=304 Identities=16% Similarity=0.098 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHH
Q 016418 51 IYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIA 130 (390)
Q Consensus 51 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~ 130 (390)
..+.|++.+++.++..+++++.|+++||+|||++++.+.++..++.++.+++++ ++.+++.|++.|+ +.+...+..
T Consensus 126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~r~l~G~-~~~~~~~~~ 201 (505)
T TIGR00898 126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN---YTVFLVFRLLVGM-GIGGIWVQA 201 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHh-hccchHHHH
Confidence 567799999999999999999999999999999999999999999999999999 9999999999999 556666666
Q ss_pred HHHH------------------------------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccc-c
Q 016418 131 VAYA------------------------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESS-G 167 (390)
Q Consensus 131 ~~~i------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~ 167 (390)
.+++ +.++..++ ..+..+++||++++...+.+.++ .
T Consensus 202 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~l~~~~~~~~a~ 280 (505)
T TIGR00898 202 VVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFL-FFLLSWFVPESPRWLISQGRIEEAL 280 (505)
T ss_pred HHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHhcCCChHHHHHCCCHHHHH
Confidence 6666 12222222 23344678988754211110000 0
Q ss_pred ----------c---ccc--cc--ccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchh
Q 016418 168 ----------L---KKA--VN--VLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQ 230 (390)
Q Consensus 168 ----------~---~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 230 (390)
+ ..+ .. ++.......+..++.++++|.++...+...+..+.........+.+.. .++.+...
T Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 359 (505)
T TIGR00898 281 KILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLG-NLGGNIYL 359 (505)
T ss_pred HHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCChHH
Confidence 0 000 00 000000000123456777888877776665555554444433444443 34666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccch--hHHH-HHHHHHHHHhhhHHHHHHHHhhcc
Q 016418 231 FSEILMMVGIGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWAS--WVPY-LSASFGVIYVLVKPSTYAIISKAS 303 (390)
Q Consensus 231 ~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~-~~~~~g~~~~~~~~~~~~~~~~~~ 303 (390)
...+..+..+.+.+..+++.||++||. +.+..+++.+.+...++. +... ..++.+++.+..++..+.+.+|.+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555666666777777789999999998 444445555555444432 3333 445556666777888889999999
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhcccc
Q 016418 304 GLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDT 370 (390)
Q Consensus 304 ~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (390)
|++.|+++.|+.+....+|+.++|.+.+ +.+. +... .+.+.+++.+++.+.....++
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~--~~~~-------~~~~~~~~~~~~~~~~~~lpe 496 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK--WLFL-------PLVLFGGLALLAGILTLFLPE 496 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH--HHhh-------HHHHHHHHHHHHHHHHHcCcC
Confidence 9999999999999999999999999998 4332 3322 334455555555555555443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=191.99 Aligned_cols=327 Identities=12% Similarity=0.080 Sum_probs=198.9
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHH
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITV 89 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~ 89 (390)
.+...+...+..........|.+|.+.++. |.+. .+.|++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---gls~-----~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~ 108 (476)
T PLN00028 37 AFHLSWISFFTCFVSTFAAAPLLPIIRDNL---NLTK-----SDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL 108 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 344455556666666666777788776444 4433 55588889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-----------------------------------
Q 016418 90 STTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA----------------------------------- 134 (390)
Q Consensus 90 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i----------------------------------- 134 (390)
+..+++.++.+++++ ++.+++.|++.|+ +.+...+ ...++
T Consensus 109 ~~~~~~~~~~~~~~s---~~~l~~~r~l~G~-~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~ 183 (476)
T PLN00028 109 MLTAPAVFCMSLVSS---ATGFIAVRFFIGF-SLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVF 183 (476)
T ss_pred HHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 8999999999998 4343322 22222
Q ss_pred -------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcch
Q 016418 135 -------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTL 195 (390)
Q Consensus 135 -------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (390)
+.+++.++..+..+ .+++++++.+.++ .++ +. ..++.+..+.++..++++++
T Consensus 184 ~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~-~~~~~~p~~~~~~----~~~--~~--~~~~~~~~~~~~~~~~~~~~ 254 (476)
T PLN00028 184 PLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL-TLGQDLPDGNYRE----LKK--SG--TMPKDSFSKVLRYGVTNYRT 254 (476)
T ss_pred HHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH-HHcCcCCCCchhh----HHh--cC--ccccccHHHHHHHHHcCchh
Confidence 00111111111222 2333222111000 000 00 00011223345566778888
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH-----------HHHH
Q 016418 196 RGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV-----------ALLA 261 (390)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~-----------~~~~ 261 (390)
|.+.+..++.........++.|.|+.+.+|+++.+.+.+.+..++.+. +..++++||++||. ...+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l 334 (476)
T PLN00028 255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTL 334 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 877777666666666677889999988889999888877765554443 56689999998762 2222
Q ss_pred HHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 016418 262 SIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLST 340 (390)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~ 340 (390)
.++..+.+...++.+... ..++.+++.+...+...++..+..| +++|++.|+.+...++|..++|.+.+ .+...++
T Consensus 335 ~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y 411 (476)
T PLN00028 335 GGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYST 411 (476)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH--hcCCccH
Confidence 222223333444433333 3445555555555556666666655 78999999987777777766665543 1111123
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhhhcc
Q 016418 341 DAPFNCKGFSIIVASICLMVSLSCACML 368 (390)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
.. .+.+.+++.+++.+..+..
T Consensus 412 ~~-------~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 412 ET-------GISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hh-------HHHHHHHHHHHHHHHHHhe
Confidence 33 3445555555555544433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-24 Score=182.36 Aligned_cols=328 Identities=16% Similarity=0.143 Sum_probs=238.8
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHH
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLL 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l 85 (390)
..+|+++.-.....++...+.+..|+.+.+- ++++.+..+.+++.++..+...+..++.|.+.||+|.|++.
T Consensus 11 ~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~--------~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~ 82 (417)
T COG2223 11 IARRNLWLSTLAFDVGFMVWTLFSPLGVFIK--------SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWT 82 (417)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHH
Confidence 3456777777777777777777777777653 44566667779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------
Q 016418 86 LITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------- 134 (390)
Q Consensus 86 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------- 134 (390)
..+.++..+-.+..+++.+.+.+|++++++.+.|+ + |........++
T Consensus 83 ~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~-~-GasFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P 160 (417)
T COG2223 83 ILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL-A-GASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAP 160 (417)
T ss_pred HHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc-c-cceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHH
Confidence 99999999999999998775446799999999999 4 33344555555
Q ss_pred ----------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHH-HHHHhhhcCcchhH
Q 016418 135 ----------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMR-DAALMVVSSPTLRG 197 (390)
Q Consensus 135 ----------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 197 (390)
+.....++..+..++...|.++.+++.+ +.+ +.++.+.++|+.|.
T Consensus 161 ~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~------------------~~~~~~~~~v~~~~~~W~ 222 (417)
T COG2223 161 LVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK------------------PQLPAQLKAVFSNKDTWL 222 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc------------------ccchhHHHHHhcCcchHH
Confidence 1122223334555666666554322211 111 33466778999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhHh
Q 016418 198 ISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFYG 270 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~ 270 (390)
+.+.++....++.++..++|.|++++||.++.+.|.........+.+ .+|+++||++.++ ....++++.....
T Consensus 223 lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~ 302 (417)
T COG2223 223 LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLS 302 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877766666664 5699999999888 3333333333333
Q ss_pred ccc-------chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 271 LAW-------ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 271 ~~~-------~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
... +.+... ..+..+++.+......+.++..+.| ++.|.+.|+.....++|++.-|...|...+..++++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~ 381 (417)
T COG2223 303 LFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTG 381 (417)
T ss_pred ccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHH
Confidence 332 223333 3345566666666677778888887 6889999999999999999999999999998844444
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhhccc
Q 016418 343 PFNCKGFSIIVASICLMVSLSCACMLD 369 (390)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (390)
.|.+...+.+++.++.+...
T Consensus 382 -------~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 382 -------AFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555544433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=178.31 Aligned_cols=290 Identities=21% Similarity=0.352 Sum_probs=205.5
Q ss_pred chhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHH
Q 016418 48 SEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIF 127 (390)
Q Consensus 48 ~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~ 127 (390)
+.+....|.+.+.+.+.+++.++.+|.++||+|||++++++.+..+++.++.+.+.| +..+...|++.|++- |..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~---F~afv~aR~l~Gi~k-gnl- 138 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN---FAAFVLARFLGGIFK-GNL- 138 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhcc-Cch-
Confidence 346678899999999999999999999999999999999999999999999999999 866667799999954 444
Q ss_pred HHHHHHH---------------------------------------------------HHHHHHHHHHHHHHHhcccCCC
Q 016418 128 CIAVAYA---------------------------------------------------VSIALLIFVPVYMQFFLVETVE 156 (390)
Q Consensus 128 ~~~~~~i---------------------------------------------------~~~~~~~~~~~~~~~~~~e~~~ 156 (390)
....+++ +..++.........+++||+.+
T Consensus 139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~ 218 (451)
T KOG2615|consen 139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP 218 (451)
T ss_pred HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 5677777 1111111112334467899876
Q ss_pred CCcccccccccccccccccccccccHHHHH-HhhhcCcchh-------HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCc
Q 016418 157 SAPRKDQESSGLKKAVNVLDRRYKSMRDAA-LMVVSSPTLR-------GISFVSFFYKLGMSGISAVLLFYLKAVFGFNK 228 (390)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 228 (390)
.+++.+++.+..+ ..+..++..+..+.. -...||++.. .+.+-.+.....+.......+.+..+.+|+++
T Consensus 219 ~rk~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss 296 (451)
T KOG2615|consen 219 LRKRNDEHSTLQE--AADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSS 296 (451)
T ss_pred chhhcccccchhh--hhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCCh
Confidence 6554421111111 000001111111100 1122343332 23344455555555566666666678899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHH---------HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHH
Q 016418 229 NQFSEILMMVGIGSIVSQILVLPLLNPFV---------ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAI 298 (390)
Q Consensus 229 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~ 298 (390)
.+.|-+++..|+.+.+.++.+.++..|.+ ++....-.++++.....+..++ ...+..+..+...+....+
T Consensus 297 ~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~L 376 (451)
T KOG2615|consen 297 MQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSL 376 (451)
T ss_pred hhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999988888876655 4444444555666666665555 5577788888899999999
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 299 ISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 299 ~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
+.+..|+++||++.|+..+...++.++||.+.|.+..|..+.+..+
T Consensus 377 v~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~ 422 (451)
T KOG2615|consen 377 VHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAY 422 (451)
T ss_pred HHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCcee
Confidence 9999999999999999999999999999999999999865555444
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-23 Score=189.54 Aligned_cols=312 Identities=12% Similarity=-0.005 Sum_probs=191.6
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHH-HHHHHHHHHHHhHhhhhcccccccCCchHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISG-LQQTVVGVFKMVVLPLLGQLADEYGRKPLL 85 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l 85 (390)
|++....++++.+++.++.....+..|.+.++. +.++.+......+ .......+...+++++.|+++||+|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTF---FPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 445667778889999999999999999777665 5555443211111 122233445567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCchhhH--------HHHHHHHHHhhcccchHHHHHHHHH-----------HH----------
Q 016418 86 LITVSTTIVPFTLLAFNQSQEFVY--------AYYVLRTISYIISQGSIFCIAVAYA-----------VS---------- 136 (390)
Q Consensus 86 ~~~~~~~~i~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~g~~~~~~~~~i-----------~~---------- 136 (390)
+.+.++..++.++++++++ ++ .+++.|+++|+ +.+...+....++ ..
T Consensus 90 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g 165 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPG---YATIGLAAPLLVLLGRLLQGF-SAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVA 165 (434)
T ss_pred HHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhhc-cccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHH
Confidence 9999999999999999998 65 46899999999 5565555555555 00
Q ss_pred HH----HHH-----------------------HHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhh
Q 016418 137 IA----LLI-----------------------FVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMV 189 (390)
Q Consensus 137 ~~----~~~-----------------------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (390)
.. +.. .......+..++.++++++.. ++ ++ +.+.++.++..
T Consensus 166 ~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~-----~~-~~------~~~~~~~~~~~ 233 (434)
T PRK15075 166 VVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFL-----AR-KH------RPSMREIFRSL 233 (434)
T ss_pred HHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHH-----Hh-hh------ccccccHHHHH
Confidence 00 000 000111112222211111000 00 00 00112223333
Q ss_pred hcCcchhHH-HHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHH---HHHHHHHHHHHhhHHHHH----HHHH
Q 016418 190 VSSPTLRGI-SFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVG---IGSIVSQILVLPLLNPFV----ALLA 261 (390)
Q Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~ 261 (390)
.++++.+.. ....++..........+.|.|+++.+|++..+.++.....+ +.+....+++.||++||+ +...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~ 313 (434)
T PRK15075 234 AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVL 313 (434)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 445444433 23333445556677888999999888999887776654443 444456689999999988 1111
Q ss_pred HHH-HHHhH---hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHH-HHHhhhhhhhhhhhc
Q 016418 262 SIA-YALFY---GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQS-ISSLLSPLAMSPLTS 335 (390)
Q Consensus 262 ~~~-~~~~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~~~~~g~~~~g~l~~ 335 (390)
..+ ..... ...++..... ...+.+++.+...+....+..|..|++.||++.|+.+.... +++.++|.+.|.+.|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 314 AILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111 11111 1112222222 23445666666667777888999999999999999765554 457889999999999
Q ss_pred cc
Q 016418 336 WF 337 (390)
Q Consensus 336 ~~ 337 (390)
..
T Consensus 394 ~~ 395 (434)
T PRK15075 394 VT 395 (434)
T ss_pred hc
Confidence 87
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-22 Score=181.28 Aligned_cols=322 Identities=17% Similarity=0.202 Sum_probs=220.9
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccC-CchHHHHHHHH
Q 016418 13 HLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYG-RKPLLLITVST 91 (390)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G-rk~~l~~~~~~ 91 (390)
.+....++..+..+...|.+|.|+++. |.+ ..++|.+.++..+...++++++|.++||++ +||++.+..++
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~~---G~s-----~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~ 77 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLESR---GFS-----GTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLL 77 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHH
Confidence 455667888889999999999999665 444 366799999999999999999999999986 57888888888
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------------
Q 016418 92 TIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------------- 134 (390)
Q Consensus 92 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------------- 134 (390)
.++........++ ++.++...++..++- ....|...++.
T Consensus 78 ~~~~~~~~~~~~~---f~~~~~~~~l~~~~~-~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~ 153 (400)
T PF03825_consen 78 SALALLLLAFSSS---FWWLFVIMLLFSFFF-SPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYL 153 (400)
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHHHH-ccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhh
Confidence 7777777777888 777777777776632 34445555555
Q ss_pred ----------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHH
Q 016418 135 ----------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFF 204 (390)
Q Consensus 135 ----------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (390)
+.+....+ .....+.+|+.++++++++. .+ +...++. ..++|+|++....+..++
T Consensus 154 ~~~~~~~~~~i~~~~~~l-l~~~~l~lp~~~~~~~~~~~------------~~-~~~~~~~-~~llk~~~~~~Fll~~~l 218 (400)
T PF03825_consen 154 GISGTSLIFYIAAILSLL-LAGFALFLPKTPPKRSAKES------------VK-KLLGLDA-LKLLKNPRFLVFLLAAFL 218 (400)
T ss_pred ccccccHHHHHHHHHHHH-HHHHHHhCCCCccccccCCC------------cc-cccchHH-HHHhcCccHHHHHHHHHH
Confidence 00001111 11112345665422221110 00 0111222 346789999999999999
Q ss_pred HHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHH---HHHHHhhHHHHH----HHHHHHHHHHhHhcc-cchh
Q 016418 205 YKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVS---QILVLPLLNPFV----ALLASIAYALFYGLA-WASW 276 (390)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~ 276 (390)
........+++.+.|+++.-|.+....+.+.++..+..++. .+.+.+|++.+. +.+..++-..+++.. ++.+
T Consensus 219 ~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~ 298 (400)
T PF03825_consen 219 IGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWP 298 (400)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999999999999999884467777777666555544433 344444444444 666667777777776 4434
Q ss_pred HHH-HH----HHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHH-HHHHHhhhhhhhhhhhcccccCCCCCCCCchH
Q 016418 277 VPY-LS----ASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGV-QSISSLLSPLAMSPLTSWFLSTDAPFNCKGFS 350 (390)
Q Consensus 277 ~~~-~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~ 350 (390)
..+ .. .+.|+..+..+.....++.+..|++.|++++|+++.. ..+|..+|..++|+++|+. +.+..+.+.. .
T Consensus 299 ~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~-g~~~~~~~~~-~ 376 (400)
T PF03825_consen 299 FIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF-GARGMFDWSA-V 376 (400)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cchhhhhHHH-H
Confidence 332 22 3589999999999999999999999999999998876 5799999999999999998 6665544333 3
Q ss_pred HHHHHHHHHHHHH
Q 016418 351 IIVASICLMVSLS 363 (390)
Q Consensus 351 ~~~~~~~~~~~~~ 363 (390)
+.+.+++.++..+
T Consensus 377 ~~v~a~~~~~~~~ 389 (400)
T PF03825_consen 377 FLVFAVMALVILV 389 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444333333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=184.47 Aligned_cols=322 Identities=11% Similarity=0.083 Sum_probs=200.6
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHH-H
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLL-L 86 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l-~ 86 (390)
+.....+++..++..++.++..|.+|.++.+++ |.++ .+.|++.+...+...+.+++.|.++||+||||.+ .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~--~~s~-----~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~ 86 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEV--HARP-----AMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIV 86 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 455677788899999999999999999986654 4333 5569988776665555555555559999998875 5
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------
Q 016418 87 ITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------- 134 (390)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------- 134 (390)
.+.+...++..+.+++++ ++.+++.+.+.+..+ +...|...++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i 162 (393)
T PRK15011 87 FCCLLGVLACTLFAWNRN---YFVLLFVGVFLSSFG-STANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPL 162 (393)
T ss_pred HHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHH
Confidence 566666677777888888 777765555444424 23333333332
Q ss_pred ---------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHH
Q 016418 135 ---------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGIS 199 (390)
Q Consensus 135 ---------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (390)
..+++.++..+..+..+||+++++++++ ++ . +..+ .+++..+...
T Consensus 163 ~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~-------~~~~------~~~~~~~~~~ 222 (393)
T PRK15011 163 AYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT-----GT--L-------EAPR------RNRRDTLLLF 222 (393)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc-----cc--c-------cccc------cccccHHHHH
Confidence 2233333334444555677543222110 00 0 0000 0112233333
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHH---HHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcc
Q 016418 200 FVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIG---SIVSQILVLPLLNPFV----ALLASIAYALFYGLA 272 (390)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 272 (390)
...+........+..+.|.|+++.+|+++.+.+.+.....+. +.+..+++.||++||+ +.....+.+......
T Consensus 223 ~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 302 (393)
T PRK15011 223 VICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA 302 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555667899999888899998888776544333 3356689999999988 222222333333334
Q ss_pred cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHH
Q 016418 273 WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSI 351 (390)
Q Consensus 273 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~ 351 (390)
++.+... ..++.+++.+...+....+.+|..| +++|+++++++...++|..++|.++|.+.|.. +++. .+
T Consensus 303 ~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~-------~~ 373 (393)
T PRK15011 303 HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHA-------VF 373 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHH-------HH
Confidence 4444433 3344555556555666677788888 56999999999999999999999999999976 5544 33
Q ss_pred HHHHHHHHHHHHhhhccc
Q 016418 352 IVASICLMVSLSCACMLD 369 (390)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~ 369 (390)
.+.+++.+++.+..++.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK15011 374 WFALVMIIATLFCLLRIK 391 (393)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 455555565555555443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=190.26 Aligned_cols=307 Identities=16% Similarity=0.117 Sum_probs=200.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHH
Q 016418 14 LLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTI 93 (390)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~ 93 (390)
.....+..........+..|.+.++. |. +..+.|++.+...++..+++++.|+++||+|||+++..+.++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 22 SFLIMLMDGYDLAAMGFAAPAISAEW---GL-----DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFS 93 (398)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhcc---CC-----CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 33344445555566667777665443 33 33566999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------------
Q 016418 94 VPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA--------------------------------------- 134 (390)
Q Consensus 94 i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------------------------------- 134 (390)
++.++..++++ ++.+++.|++.|+ +.+...+...+++
T Consensus 94 ~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 169 (398)
T TIGR00895 94 VFTLLCALATN---VTQLLILRFLAGL-GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG 169 (398)
T ss_pred HHHHHHHHccc---hHHHHHHHHHHhc-ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999 8999999999999 5566666666665
Q ss_pred ------HHHHHHHHHHHHHHHhcccCCCCCccccccc------------ccccc-cccccccccccHHHHHHhhhcC---
Q 016418 135 ------VSIALLIFVPVYMQFFLVETVESAPRKDQES------------SGLKK-AVNVLDRRYKSMRDAALMVVSS--- 192 (390)
Q Consensus 135 ------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~--- 192 (390)
+.+++..+..++....+||+++...+++.++ .++.+ +..+..++.+..++..+.++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (398)
T TIGR00895 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTA 249 (398)
T ss_pred ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhH
Confidence 2223334444445566777654211110000 00000 0000001111122223333332
Q ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHH---HHHHHHHHHHhhHHHHH---HHHHHHH-H
Q 016418 193 PTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGI---GSIVSQILVLPLLNPFV---ALLASIA-Y 265 (390)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~-~ 265 (390)
+..+...+..++..........+.|.+. +.+|.++.+.+.......+ .+.+..+++.||++||. ......+ .
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 328 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFA 328 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3333444445555566666777888444 4568888887777655544 44456688999998877 2222222 2
Q ss_pred HHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh
Q 016418 266 ALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPL 333 (390)
Q Consensus 266 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l 333 (390)
.......++.+..+ ..++.+++.+...+...++.+|..|+++||++.|+.+....+|..+||.+.|.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 329 VLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 22222233444443 567788888889999999999999999999999999999999999999999876
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=197.02 Aligned_cols=320 Identities=16% Similarity=0.151 Sum_probs=193.9
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHH
Q 016418 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLIT 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~ 88 (390)
+.+..+++..+++.+......+.+|.+.++. |.+ ..+.+++.+.+.++..+++++.|+++||+|||+++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~s-----~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 91 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEF---GLT-----TVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS 91 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 4566777888888888888888888776444 433 35569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH----------------------------------
Q 016418 89 VSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------- 134 (390)
Q Consensus 89 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------- 134 (390)
.++.+++.++..++++ ++.+++.|++.|+ +.+...+...+++
T Consensus 92 ~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 167 (496)
T PRK03893 92 IVLFSVGTLACGFAPG---YWTLFIARLVIGM-GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLV 167 (496)
T ss_pred HHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999 4454444444444
Q ss_pred ----------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHH-------------HHHhh--
Q 016418 135 ----------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRD-------------AALMV-- 189 (390)
Q Consensus 135 ----------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-- 189 (390)
..+.+..+..+......||+++++++++.++..++ ..+...+.+..... .+...
T Consensus 168 ~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (496)
T PRK03893 168 VPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRT-MVDILYRGEHRIINILLTLAAAAALWFCFAGNLQ 246 (496)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchh-HHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11111111111222234443322111110000000 00000000000000 00000
Q ss_pred -------------------------hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH-
Q 016418 190 -------------------------VSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI- 243 (390)
Q Consensus 190 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~- 243 (390)
.+.+.........+...........++|.|+++.+|+++.+.+.+.+...+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~ 326 (496)
T PRK03893 247 NAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAV 326 (496)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 000000011111111111122355788999987789999998888766554443
Q ss_pred --HHHHHHHhhHHHHH----HHHHHHHHHHhHhccc--chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHH
Q 016418 244 --VSQILVLPLLNPFV----ALLASIAYALFYGLAW--ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGF 314 (390)
Q Consensus 244 --~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 314 (390)
+..+++.||++||+ +.....+..+...... +.+... ..+..+.......+...+++++..|+++||+++|+
T Consensus 327 g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 406 (496)
T PRK03893 327 GCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGF 406 (496)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccch
Confidence 45588999999887 2222223322222222 222222 22222333333455667788999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 315 IAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 315 ~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
.+....+|..+||.+.|.+.|.. ++..
T Consensus 407 ~~~~~~~g~~lgp~l~g~l~~~~-g~~~ 433 (496)
T PRK03893 407 TYNVGALGGALAPILGALIAQRL-DLGT 433 (496)
T ss_pred hhhhhhHHHHHHHHHHHHHhccC-ChHH
Confidence 99999999999999999999976 5544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=194.59 Aligned_cols=322 Identities=9% Similarity=0.064 Sum_probs=191.8
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHH
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITV 89 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~ 89 (390)
......++.+.+.+..+......|.+-.+.. + ++...+..+.+++.+...++..++++++|+++||+|||+++..+.
T Consensus 17 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~ 93 (502)
T TIGR00887 17 AIVIAGVGFFTDSYDLFCISLVTKMLGYVYY--H-GKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL 93 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3445666777788888878887776544321 1 223444566699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCch---hhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------HHHHH--
Q 016418 90 STTIVPFTLLAFNQSQE---FVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------VSIAL-- 139 (390)
Q Consensus 90 ~~~~i~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------~~~~~-- 139 (390)
++..++.++++++++.. .++.+++.|+++|+ +.|...+....++ +...+
T Consensus 94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~-~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGV-GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888875421 15789999999999 6677667777777 00000
Q ss_pred ----------------------------------------HHHHHHHHHHhcccCCCCC---cccccccc----------
Q 016418 140 ----------------------------------------LIFVPVYMQFFLVETVESA---PRKDQESS---------- 166 (390)
Q Consensus 140 ----------------------------------------~~~~~~~~~~~~~e~~~~~---~~~~~~~~---------- 166 (390)
+.+...+..+++||+|++. ++++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~ 252 (502)
T TIGR00887 173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVK 252 (502)
T ss_pred HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccc
Confidence 0011223334689998752 11110000
Q ss_pred -cccccc-c---cccc-ccccHHHHHHhhhcCcchhHH---HHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHH-----
Q 016418 167 -GLKKAV-N---VLDR-RYKSMRDAALMVVSSPTLRGI---SFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFS----- 232 (390)
Q Consensus 167 -~~~~~~-~---~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----- 232 (390)
+++.++ + ++.+ .+.++++.++...+++..+.. ....+...+.+++...+.|.++++. |+++...+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~-G~~~~~~~~~~~~ 331 (502)
T TIGR00887 253 IEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAI-GYSPPAATNNAYE 331 (502)
T ss_pred cccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHH-cCCCCccchhHHH
Confidence 000000 0 0000 011233333221112221111 2223333344555666678888654 77643211
Q ss_pred ----------HHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhccc----chhHHHHH-HHHHHHHhhhHH
Q 016418 233 ----------EILMMVGIGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAW----ASWVPYLS-ASFGVIYVLVKP 293 (390)
Q Consensus 233 ----------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~-~~~g~~~~~~~~ 293 (390)
.+.....+.+.+..+++.||++||. +....+++...+.... +....... +....+.....+
T Consensus 332 ~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (502)
T TIGR00887 332 ELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNA 411 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCc
Confidence 1112233445556689999999998 3333333333332211 11111111 111222223455
Q ss_pred HHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 294 STYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 294 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
..+.+..|.+|++.|+++.|+.+...+++++++|.+.+.+.+.
T Consensus 412 ~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 454 (502)
T TIGR00887 412 TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454 (502)
T ss_pred hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence 6677889999999999999999999999999999999999885
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-22 Score=185.29 Aligned_cols=301 Identities=13% Similarity=0.073 Sum_probs=205.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHH
Q 016418 11 LLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVS 90 (390)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~ 90 (390)
+..+....++..+......+.+|.+.++. |.+ ..+.|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~---~~s-----~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~ 99 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQFQQAF---TLT-----NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34556666666777777888888774333 443 3666999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH----------------------------HHHH-
Q 016418 91 TTIVPFTLL---AFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA----------------------------VSIA- 138 (390)
Q Consensus 91 ~~~i~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i----------------------------~~~~- 138 (390)
+..++.+++ .++++ ++.++++|+++|+ +.+...+..+.++ ..+.
T Consensus 100 ~~~~~~~l~~~~~~a~~---~~~ll~~r~l~G~-g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 100 LYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998775 46788 9999999999999 6566666666654 1100
Q ss_pred ---------------------------------------HHHHHH-HHHHHhcccCCCCCcccccccccccccccccccc
Q 016418 139 ---------------------------------------LLIFVP-VYMQFFLVETVESAPRKDQESSGLKKAVNVLDRR 178 (390)
Q Consensus 139 ---------------------------------------~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (390)
+..+.. +..+....+.++.+++++ .+ ++
T Consensus 176 l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~----~~--------~~ 243 (438)
T PRK10133 176 LILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH----SD--------AK 243 (438)
T ss_pred HHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc----cc--------cc
Confidence 000000 111111111111110000 00 00
Q ss_pred cccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHH-hhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHH
Q 016418 179 YKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYL-KAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLN 254 (390)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~ 254 (390)
..+..+..+.++++|.++...+..++..........+.+.|+ ++.+|.++.+.+..+....+... ...+++.||++
T Consensus 244 ~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g 323 (438)
T PRK10133 244 QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFA 323 (438)
T ss_pred ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 011222335567788888777777777777777778888885 56779999999987766555444 45688899998
Q ss_pred HHH----HHHHHHHHHHhHhcccchhHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhh
Q 016418 255 PFV----ALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAM 330 (390)
Q Consensus 255 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~ 330 (390)
+|+ +..+....++.....++.+......+.|++.+..+|..++...+..| ++.+++.++.. ....+..++|.+.
T Consensus 324 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~-~~~~~as~l~~-~~~~g~~~~~~i~ 401 (438)
T PRK10133 324 PHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIV-MTIIGGGIVTPVM 401 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhccchhHHh-HHhccchHHHHHH
Confidence 887 33333333333333334333345678899999999999999999987 45788888876 4557889999999
Q ss_pred hhhhccc
Q 016418 331 SPLTSWF 337 (390)
Q Consensus 331 g~l~~~~ 337 (390)
|.+.|..
T Consensus 402 G~l~~~~ 408 (438)
T PRK10133 402 GFVSDAA 408 (438)
T ss_pred HHHHHhc
Confidence 9999876
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-22 Score=182.49 Aligned_cols=291 Identities=15% Similarity=0.062 Sum_probs=193.5
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHH
Q 016418 12 LHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVST 91 (390)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~ 91 (390)
........+..++.++..|.+|.+.++. |.+ ..+.|++.+++.++..++++++|+++||+|||+++..+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~---~~s-----~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 80 (401)
T PRK11043 9 VYLAGLSMLGFLATDMYLPAFKAIQADL---QTS-----ASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSL 80 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH---CCC-----HHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHH
Confidence 3344445566677788888888776544 443 35669999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------------
Q 016418 92 TIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------------- 134 (390)
Q Consensus 92 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------------- 134 (390)
..++.++..++++ ++.+++.|+++|+ +.+...+...+++
T Consensus 81 ~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 156 (401)
T PRK11043 81 FALGSLGMLWVES---AAQLLVLRFVQAV-GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH 156 (401)
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999998 4344444333333
Q ss_pred --------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHH
Q 016418 135 --------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYK 206 (390)
Q Consensus 135 --------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (390)
+.+.+.++..+ ..+.++|+++++++ + +.++.+++++++|+++...+...+..
T Consensus 157 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (401)
T PRK11043 157 FGWQAIFATLFAITLLLIL-PTLRLKPSKKARKQ-S------------------QDALTFKQLLKSKTYLGNVLIFAACS 216 (401)
T ss_pred CChHHHHHHHHHHHHHHHH-HHHHcCCCCCcccc-c------------------hHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 11122222222 22233433221110 0 11223455667777776655555555
Q ss_pred HHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHH---HHHHHHHHHhhHHHHH----HHHHHHHH---HHhHhc--ccc
Q 016418 207 LGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIG---SIVSQILVLPLLNPFV----ALLASIAY---ALFYGL--AWA 274 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~--~~~ 274 (390)
........+.|.+.++ +|+++.+.+.......+. +.+..+.+.||+++|+ .....+++ ...... .++
T Consensus 217 ~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (401)
T PRK11043 217 AAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPS 295 (401)
T ss_pred HHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 5566667788888876 599998888765443333 3334467778877666 22222222 112221 223
Q ss_pred hhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 275 SWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 275 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
.+... ...+.+.+.+..+|...+...+..| +++|++.|+.+.....+...++.+.|.+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 296 LVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 33333 3456677888888888888777776 6899999999999998999999999988774
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=190.79 Aligned_cols=291 Identities=13% Similarity=0.049 Sum_probs=182.3
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCc-hhhHHHHHHHHHHhhcccchHHH
Q 016418 50 AIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQ-EFVYAYYVLRTISYIISQGSIFC 128 (390)
Q Consensus 50 ~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~g~~~~ 128 (390)
+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++.++. ..++.+.+.|++.|+ +.+...+
T Consensus 59 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~-~~g~~~~ 137 (438)
T TIGR00712 59 SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGW-FQGMGWP 137 (438)
T ss_pred CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH-HhhcchH
Confidence 34566999999999999999999999999999999999999999988877764311 116778889999998 4454444
Q ss_pred HHHHHH----------------------------------------------HHHHHHHHHHHHHHHhcccCCCCCcccc
Q 016418 129 IAVAYA----------------------------------------------VSIALLIFVPVYMQFFLVETVESAPRKD 162 (390)
Q Consensus 129 ~~~~~i----------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 162 (390)
.....+ +.+++.++..+..++.+||++++.+.++
T Consensus 138 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 217 (438)
T TIGR00712 138 PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP 217 (438)
T ss_pred HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC
Confidence 444443 2233333334445556777654321111
Q ss_pred ccc-cccc-ccccccccccccHHHHH-HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q 016418 163 QES-SGLK-KAVNVLDRRYKSMRDAA-LMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVG 239 (390)
Q Consensus 163 ~~~-~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 239 (390)
.++ +++. ++..++.+...+.++.+ +.+++++.++...+..++..........+.|.|+++..|+++.+.+......+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~ 297 (438)
T TIGR00712 218 IEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYE 297 (438)
T ss_pred chhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHH
Confidence 100 0000 00000001111222322 34678898988888777777777788899999999888999888777655444
Q ss_pred ---HHHHHHHHHHHhhHHHHH----HHHHHH---HHHHhHhcc--cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCC
Q 016418 240 ---IGSIVSQILVLPLLNPFV----ALLASI---AYALFYGLA--WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLN 306 (390)
Q Consensus 240 ---~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~--~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~ 306 (390)
+.+.+..+++.||.++++ +..... ++...+... .+.+... ..+..+.+.............|..|++
T Consensus 298 ~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 377 (438)
T TIGR00712 298 YAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKK 377 (438)
T ss_pred HHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChh
Confidence 444456688999985432 221111 122222221 2233222 223333332222223334677899999
Q ss_pred chhhHHHHHHHHHHHH-HhhhhhhhhhhhcccccCCC
Q 016418 307 NQGKAQGFIAGVQSIS-SLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 307 ~~g~~~g~~~~~~~~~-~~~g~~~~g~l~~~~~~~~~ 342 (390)
+||++.|+.+....++ ..++|.+.|.+.|+. +++.
T Consensus 378 ~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~-g~~~ 413 (438)
T TIGR00712 378 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDG 413 (438)
T ss_pred heeeehhhhchHHHhhhhhhcchhHHHHHHhc-cchH
Confidence 9999999999988876 468999999999977 5554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-22 Score=183.36 Aligned_cols=317 Identities=11% Similarity=0.071 Sum_probs=202.4
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHH
Q 016418 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLIT 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~ 88 (390)
+.++.+....++...+.+...|.+|.|+.+.+ |.+ ..+.|++.+++.++..+++++.|+++||+|||+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s-----~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~ 74 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVN--GLS-----KTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWI 74 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 45677777888889999999999999986653 433 36679999999999999999999999999999999887
Q ss_pred HHHHHHHHHHH---HhccCc--hhhHHHHHHHHHHhhcccchHHHHHHHHH-----------------------------
Q 016418 89 VSTTIVPFTLL---AFNQSQ--EFVYAYYVLRTISYIISQGSIFCIAVAYA----------------------------- 134 (390)
Q Consensus 89 ~~~~~i~~~~~---~~~~~~--~~~~~l~~~r~l~G~~~~g~~~~~~~~~i----------------------------- 134 (390)
.....++.... .+.+.. ..++...+.+++.|+ ..+...+....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~ 153 (396)
T TIGR00882 75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGF-VFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIA 153 (396)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHH
Confidence 76665543322 122210 013344566777776 3233333333332
Q ss_pred -------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHH
Q 016418 135 -------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFV 201 (390)
Q Consensus 135 -------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (390)
+.+.+.++..++.+...||+++++++++ ..+ .+++. ++.+ .+++++|+|+++...+.
T Consensus 154 g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~---~~~~-~~~~~l~~~~~~~~~l~ 223 (396)
T TIGR00882 154 GILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVAN----ALG--ANASA---FSLK-LALELFRQRKFWMFVLY 223 (396)
T ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhc----ccc--cccCC---CCHH-HHHHHHcCCcHHHHHHH
Confidence 2233333333333333343322111100 000 00001 1122 23556778888777777
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhc---CCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhc
Q 016418 202 SFFYKLGMSGISAVLLFYLKAVF---GFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGL 271 (390)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 271 (390)
.+.....+.....+.+.|+++.+ +.+....|...+...+... ...+.+.||++||+ +..+.++.......
T Consensus 224 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~ 303 (396)
T TIGR00882 224 VVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF 303 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 66666666667677888887765 4455566776665544443 45578899999888 44445555555556
Q ss_pred ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHH-HHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 272 AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGF-IAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 272 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
.++.+..+ ..++.+++..........+..+..|++.+++..+. .+....+|+.++|.+.|++.|.. |++..+
T Consensus 304 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~~f 377 (396)
T TIGR00882 304 ATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQGAY 377 (396)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHHHH
Confidence 66666554 45666766665555556677788888888887766 67889999999999999999987 665543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-23 Score=191.31 Aligned_cols=322 Identities=14% Similarity=0.092 Sum_probs=186.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHH
Q 016418 11 LLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVS 90 (390)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~ 90 (390)
.....++.+.+.+..+.+.+..|.+.++...+...+.+.+..+.|++.+++.++..++++++|+++||+|||++++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~ 93 (479)
T PRK10077 14 TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAV 93 (479)
T ss_pred HHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34455566667777777788777665444211223446667788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---------cCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------H-
Q 016418 91 TTIVPFTLLAFN---------QSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------V- 135 (390)
Q Consensus 91 ~~~i~~~~~~~~---------~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------~- 135 (390)
+..++.+..+++ ++...++.+++.|+++|+ +.|...+...+++ +
T Consensus 94 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~ 172 (479)
T PRK10077 94 LFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI-GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVV 172 (479)
T ss_pred HHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh-hHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHH
Confidence 999888877763 222225678899999999 6677777787777 0
Q ss_pred --------------------------HHHHHHHHHHHHHHhcccCCCCCcccccccccc-c-cc---ccccccccccHHH
Q 016418 136 --------------------------SIALLIFVPVYMQFFLVETVESAPRKDQESSGL-K-KA---VNVLDRRYKSMRD 184 (390)
Q Consensus 136 --------------------------~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~ 184 (390)
...+..+...+..+++||++++..+++++++.+ . ++ ..+.....++.++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (479)
T PRK10077 173 YFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKH 252 (479)
T ss_pred HHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 000111112233456788765321111000000 0 00 0000000011111
Q ss_pred HHHh-hhcCcchhHHHHHHH---------HHHHHhhhHHHHHHHHHhhhcCCCchhHHHHH---HHHHHHHHHHHHHHHh
Q 016418 185 AALM-VVSSPTLRGISFVSF---------FYKLGMSGISAVLLFYLKAVFGFNKNQFSEIL---MMVGIGSIVSQILVLP 251 (390)
Q Consensus 185 ~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~---~~~~~~~~~~~~~~~~ 251 (390)
..+. ..+.+..+......+ ...........+.|.+.++ .|.+....+... ....+.+.+..+++.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~d 331 (479)
T PRK10077 253 SLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVD 331 (479)
T ss_pred HHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 001111111110111 1111122233444555554 477765544443 3334455566689999
Q ss_pred hHHHHH----HHHHHHHHHHhHhcc---cch--hHHHHHHHHHHHHhh-hHHHHHHHHhhccCCCchhhHHHHHHHHHHH
Q 016418 252 LLNPFV----ALLASIAYALFYGLA---WAS--WVPYLSASFGVIYVL-VKPSTYAIISKASGLNNQGKAQGFIAGVQSI 321 (390)
Q Consensus 252 ~~~~~~----~~~~~~~~~~~~~~~---~~~--~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 321 (390)
|++||. +....+++.+.+... +.. +.....++.+.+.+. ..|..+.+++|..|+++|+++.|+.+...++
T Consensus 332 r~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~ 411 (479)
T PRK10077 332 KFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI 411 (479)
T ss_pred HhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHH
Confidence 999988 444444444443321 111 222233344444443 3477789999999999999999999999999
Q ss_pred HHhhhhhhhhhhh
Q 016418 322 SSLLSPLAMSPLT 334 (390)
Q Consensus 322 ~~~~g~~~~g~l~ 334 (390)
+..+++.+.+.+.
T Consensus 412 g~~~~~~~~p~~~ 424 (479)
T PRK10077 412 ANYFVSWTFPMMD 424 (479)
T ss_pred HHHHHHHHhHHHH
Confidence 9999987776554
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=189.58 Aligned_cols=320 Identities=15% Similarity=0.104 Sum_probs=225.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccch
Q 016418 46 TCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGS 125 (390)
Q Consensus 46 ~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~ 125 (390)
+.+.+..+.|++.+.++.|+++++.+.|+++||+|-|+++..+.++.++++++..++.+.+ ++.+++.|+++|+ +.|.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-~~~~~~~R~lqGl-~~g~ 144 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-FYLLLVLRFLQGL-GQGV 144 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHhHH-HHhH
Confidence 4566778889999999999999999999999999999999999999999999999877644 4578999999999 6677
Q ss_pred HHHHHHHHH----------------------------------------------HHHHHHHHHHHHHHHhcccCCCCCc
Q 016418 126 IFCIAVAYA----------------------------------------------VSIALLIFVPVYMQFFLVETVESAP 159 (390)
Q Consensus 126 ~~~~~~~~i----------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~ 159 (390)
..|....+. +.+.++++..++...+..|+|.+++
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~ 224 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP 224 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 777666555 5556666665555566666665533
Q ss_pred ccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q 016418 160 RKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVG 239 (390)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 239 (390)
....+|.+.-++.+.+...++..+-.++.+++++.+|...+..+....+...+..+.|.|+++.+|+|..+.|++.++.-
T Consensus 225 ~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~ 304 (466)
T KOG2532|consen 225 NISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPF 304 (466)
T ss_pred CCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHH
Confidence 32211111111111001100001222466778999999999999999999999999999999999999999999987766
Q ss_pred HHHH---HHHHHHHhhHHHH---------H----HHHHHHHHHHhHhcccchh--HHHHHHHHHHHHhh-hHHHHHHHHh
Q 016418 240 IGSI---VSQILVLPLLNPF---------V----ALLASIAYALFYGLAWASW--VPYLSASFGVIYVL-VKPSTYAIIS 300 (390)
Q Consensus 240 ~~~~---~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~-~~~~~~~~~~ 300 (390)
+... +..+.++||+.+| . +....++.++.+++.+... ..+.......+..+ ..+..+.-..
T Consensus 305 l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~ 384 (466)
T KOG2532|consen 305 LAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQ 384 (466)
T ss_pred HHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhh
Confidence 5555 4668999998662 1 6666667777777766422 23333333333333 3333333334
Q ss_pred hccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhccccccC
Q 016418 301 KASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEEN 373 (390)
Q Consensus 301 ~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (390)
+..| ++.+..+|+.+....+..+++|.+.|.+...-...+|.. +|++.+++.+++.+++...-+.++
T Consensus 385 ~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~-----VF~i~a~i~~~~~i~f~~f~s~e~ 451 (466)
T KOG2532|consen 385 DIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI-----VFLIAAGILIVGNIIFLFFGSGEP 451 (466)
T ss_pred hccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH-----HHHHHHHHHHHhchheeEeecCcc
Confidence 4455 899999999999999999999999999984200122222 677788887777766655544333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-22 Score=178.54 Aligned_cols=319 Identities=14% Similarity=0.092 Sum_probs=210.1
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLI 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~ 87 (390)
||+++..+++.++....+.+..|+.+.+.++ +.+.+..+.+++.+++.+++.++.++.|++.||+|.|+++..
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~-------~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~ 105 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKI-------GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF 105 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 3677788888888888888888888866432 344555677999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-----cCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------HH-------H----
Q 016418 88 TVSTTIVPFTLLAFN-----QSQEFVYAYYVLRTISYIISQGSIFCIAVAYA--------------VS-------I---- 137 (390)
Q Consensus 88 ~~~~~~i~~~~~~~~-----~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------~~-------~---- 137 (390)
+.++..+..+..+++ ++ ++.+++.|++.|+ + +...+.....+ +. .
T Consensus 106 ~~ll~~i~~~~~~~a~~~~~~s---~~~lli~r~l~Gi-g-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 106 STAILIIPCVWLGIAVQNPNTP---FGIFIVIALLCGF-A-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HHHHHHHHHHHHHHHHcccCCC---HHHHHHHHHHHHH-H-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence 999999999999886 77 9999999999999 5 44556666665 00 0
Q ss_pred --------------------------------------HHHHHHHHHHHHhcccCCCCCccccccccccccccccccccc
Q 016418 138 --------------------------------------ALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRY 179 (390)
Q Consensus 138 --------------------------------------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (390)
.+.++..++.++..++.++ .+
T Consensus 181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---------------------~~ 239 (462)
T PRK15034 181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---------------------SR 239 (462)
T ss_pred HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------------------cc
Confidence 0000111111222222111 01
Q ss_pred ccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHHHHHHHHHHhhHHHHH-
Q 016418 180 KSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNK-NQFSEILMMVGIGSIVSQILVLPLLNPFV- 257 (390)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~- 257 (390)
.+.++ ....+|+|+.|.+.+.+++....+.++..++|.|.++.++-.. .....+..+.+......+|+++||+++++
T Consensus 240 ~~~~~-~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v 318 (462)
T PRK15034 240 ASIAD-QLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV 318 (462)
T ss_pred cCHHH-HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH
Confidence 12333 3447789999999999999998999999999999988763211 11122223334444457799999999988
Q ss_pred ---HHHHHHHHHHh--Hhccc----chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCC---------------------C
Q 016418 258 ---ALLASIAYALF--YGLAW----ASWVPY-LSASFGVIYVLVKPSTYAIISKASGL---------------------N 306 (390)
Q Consensus 258 ---~~~~~~~~~~~--~~~~~----~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~---------------------~ 306 (390)
+.+...+.... ..... +.+... ..+...++.|..+...+-++.+.+|+ +
T Consensus 319 l~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~ 398 (462)
T PRK15034 319 TLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVT 398 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHH
Confidence 22222222211 11111 223222 22333455555555666666666663 1
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhc
Q 016418 307 NQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACM 367 (390)
Q Consensus 307 ~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (390)
+.|.+.|+......+|+++-|.+.|...+..+++...+ ....+..+++..+.+.
T Consensus 399 ~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~-------~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 399 ETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAM-------KVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHH-------HHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999875555433 4444445555444433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-21 Score=177.36 Aligned_cols=290 Identities=9% Similarity=0.003 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCc----hHHHHHHHH
Q 016418 16 LPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRK----PLLLITVST 91 (390)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk----~~l~~~~~~ 91 (390)
...+...++.++..|.+|.+++|. |.+ ..++|++.+++.++..++++++|+++||+||| +.+.+....
T Consensus 11 ~~~~~~~~~~g~~~p~l~~~l~~~---g~s-----~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 82 (382)
T PRK11128 11 LSYFGYFFAYGVFLPFWSVWLKGQ---GYT-----PETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL 82 (382)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhc---CCC-----HHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 345666678899999999998664 444 46679999999999999999999999999994 333322222
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------------
Q 016418 92 TIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------------- 134 (390)
Q Consensus 92 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------------- 134 (390)
. ........++ +|.+++.|++.|+. .+...|...++.
T Consensus 83 ~--~~~~~~~~~~---~~~l~i~~~l~g~~-~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g 156 (382)
T PRK11128 83 F--AVAFWFGAHS---FWLLFVAIGLFNLF-FSPLVPLTDALANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG 156 (382)
T ss_pred H--HHHHHHhccc---HHHHHHHHHHHHHH-HcccccHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 2223344577 89999999999983 344445444443
Q ss_pred ------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHH
Q 016418 135 ------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLG 208 (390)
Q Consensus 135 ------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (390)
..++ ..+...+..+..||+++++++++ + .. +.++.+++++|+|+++...+..++....
T Consensus 157 ~~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~------~~----~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 220 (382)
T PRK11128 157 EQAILWILTA-GVASMLLGQLLRPTIMPQGESRQ-----Q------ES----AGWPAWKALLKEPTVWRFLLCVSLLQGS 220 (382)
T ss_pred hhHHHHHHHH-HHHHHHHHHHccCCCCCcccccc-----c------cc----cccchHHHHHcChhHHHHHHHHHHHHHH
Confidence 1111 11111222223343322111000 0 00 0112346677899999888888888777
Q ss_pred hhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-H
Q 016418 209 MSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-L 280 (390)
Q Consensus 209 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~ 280 (390)
......+.|.|.++ .|.++.+.|.+.+...+...+ ..+.+.||.++|+ +....+++.+.+...++.|..+ .
T Consensus 221 ~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
T PRK11128 221 HAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVI 299 (382)
T ss_pred hHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 77788888999976 599988889887766554443 3456777777776 5555556666666677777665 5
Q ss_pred HHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHH-HHHHHHHhhhhhhhhhhhccc
Q 016418 281 SASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIA-GVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 281 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~g~~~~g~l~~~~ 337 (390)
.++.|++.+...+....+..+. +++++++.++..+ .....|..+||.++|.++|..
T Consensus 300 ~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~ 356 (382)
T PRK11128 300 QILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL 356 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888888888888888887 5567799999887 445678899999999999987
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=206.01 Aligned_cols=314 Identities=13% Similarity=0.037 Sum_probs=210.3
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHH
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLL 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l 85 (390)
.+++.+..++...++..++.++....++.+....+ ..+.......+.++..+++.++.+++++++|+++||+|||+++
T Consensus 8 ~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 8 MKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGL--SGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 34566777888888888887765444433322221 2222222335568999999999999999999999999999976
Q ss_pred HH---HHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH----------------------------
Q 016418 86 LI---TVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------- 134 (390)
Q Consensus 86 ~~---~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------- 134 (390)
.. ..+...+..+.....++ +++++++|+++|+ +.+...|...+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~s---~~~l~~~~~l~gi-~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp 161 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGFHLNS---VPLLFAALFLMGI-HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGT 161 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHH
Confidence 43 22222222233334477 9999999999999 5567777777777
Q ss_pred ----------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHH
Q 016418 135 ----------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGI 198 (390)
Q Consensus 135 ----------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (390)
+...+..+..++..+.+|++++.++..+. + .....+..+.++.++++|.++..
T Consensus 162 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~ 230 (1140)
T PRK06814 162 IIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAPDLKI----D-------RNIIRSTITLLKYAKADKRIWLA 230 (1140)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCee----c-------cchHHHHHHHHHHHhcCchHHHH
Confidence 11112222223334455654332211110 0 00111344567888899999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHH---HHHHhhHHHHH----HHHHHHHHHHhHhc
Q 016418 199 SFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQ---ILVLPLLNPFV----ALLASIAYALFYGL 271 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~ 271 (390)
.+..++..+.......++|.|+++.+|.++.+.|++.+..+++..+.+ +.+.++..++. +.++.++..+.+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (1140)
T PRK06814 231 ILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAF 310 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHh
Confidence 888888888888888999999999999999999998877766655433 44444332222 33333332222222
Q ss_pred c--------------------cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhh
Q 016418 272 A--------------------WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAM 330 (390)
Q Consensus 272 ~--------------------~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~ 330 (390)
. .+.|..+ ..+++|++.+...+...+++++.+|++++|+++|+.+....++..+++.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~ 390 (1140)
T PRK06814 311 ASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL 390 (1140)
T ss_pred cccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence 1 3444444 556788888888888999999999999999999999999999999999999
Q ss_pred hhhhcc
Q 016418 331 SPLTSW 336 (390)
Q Consensus 331 g~l~~~ 336 (390)
|.+.+.
T Consensus 391 g~l~~~ 396 (1140)
T PRK06814 391 ALLQAL 396 (1140)
T ss_pred HHHHHh
Confidence 999854
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-21 Score=176.99 Aligned_cols=283 Identities=15% Similarity=0.147 Sum_probs=186.9
Q ss_pred HHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHh
Q 016418 22 WVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAF 101 (390)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~ 101 (390)
.++.++..|.+|.+.++. |.+ ..+.|++.+++.++..++.+++|+++||+|||+++..+.++..++...+.+
T Consensus 4 ~~~~~~~~p~~~~~~~~~---~~s-----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~ 75 (377)
T PRK11102 4 PLAIDMYLPALPVIAADF---GVS-----AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL 75 (377)
T ss_pred chHHHHHhccHHHHHHHh---CCC-----HHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH
Confidence 356778889999988654 444 356699999999999999999999999999999999999999999999999
Q ss_pred ccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------------------HH
Q 016418 102 NQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------------------VS 136 (390)
Q Consensus 102 ~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------------------~~ 136 (390)
+++ ++.+++.|++.|+ +.+...+...+++ +.
T Consensus 76 ~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 76 AQT---IDQLIYMRFLHGL-AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred Hcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 999 9999999999999 4455555555555 22
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHH
Q 016418 137 IALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVL 216 (390)
Q Consensus 137 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (390)
+.+..+..+...+..||+++++++++ .+ .++..+.++..+++|+++...+..++..........+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (377)
T PRK11102 152 ALAAILAAALVFFFIPETLPKERRQP-------------FH-LRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAG 217 (377)
T ss_pred HHHHHHHHHHHHHhCCccCcccccCC-------------CC-hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22233333334455666543221110 00 00112234456678887777776666666666667777
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHH---HHHHhHhcc-cchhHHH-HHHHH
Q 016418 217 LFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASI---AYALFYGLA-WASWVPY-LSASF 284 (390)
Q Consensus 217 ~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~-~~~~~~~-~~~~~ 284 (390)
|.+..+.+|+++.+.+.+....++... +..+++.||++||+ +..... +........ .+.+... .....
T Consensus 218 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (377)
T PRK11102 218 PFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAF 297 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 888888789999998888766655444 45588999999887 222211 112222211 2233333 22334
Q ss_pred HHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHH-HHHHhhhhhhhh
Q 016418 285 GVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQ-SISSLLSPLAMS 331 (390)
Q Consensus 285 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~~~~~g~~~~g 331 (390)
+.+.+...+.......|..| +++|++.++.+... .++..+++.+.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 298 VGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555667777776 88999999887664 456666665543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-21 Score=178.62 Aligned_cols=330 Identities=13% Similarity=0.066 Sum_probs=211.0
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhccccccc-----CC
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEY-----GR 81 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----Gr 81 (390)
++|+...++...+..++..+...+.+|.+.++. |.+. .+.|.. +...... ++.+++|+++||+ ||
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~---g~~~-----~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Gr 79 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAWMTVE---NIDL-----KTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGR 79 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCH-----HHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCC
Confidence 355566777777888888999999999998665 4333 334554 3333333 6889999999999 99
Q ss_pred chH-HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------
Q 016418 82 KPL-LLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------- 134 (390)
Q Consensus 82 k~~-l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------- 134 (390)
||. +..+.+..+++....++.+....++.+.+.+++.+++. +...+...++.
T Consensus 80 rr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~-a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ll 158 (491)
T PRK11010 80 RRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCS-ASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLV 158 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence 875 77888888888777777543222788888999999844 45555555555
Q ss_pred --------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcc
Q 016418 135 --------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPT 194 (390)
Q Consensus 135 --------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (390)
+.+++.++. .+..+..||+++++++ + +. . . ++..+.+++.+++++
T Consensus 159 g~~l~~~l~~~~~GWr~~f~i~a~l~ll~-~l~~~~~~e~~~~~~~-~-----~~--~---~---~~~~~~l~~~~~~~~ 223 (491)
T PRK11010 159 SGGLALWLADRYLGWQGMYWLMAALLIPC-IIATLLAPEPTDTIPV-P-----KT--L---E---QAVVAPLRDFFGRNN 223 (491)
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHH-HHHHHhcCCCcccccc-c-----cc--h---h---hhHHHHHHHHHcCcC
Confidence 112222222 2222345665422110 0 00 0 0 011223445566777
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHH----HHHHHHHHHHHHhhHHHHH----HHHHHHHHH
Q 016418 195 LRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMV----GIGSIVSQILVLPLLNPFV----ALLASIAYA 266 (390)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 266 (390)
.+...+..++..........+.+.|+.+.+|+++.+.+...... .+.+.+..+++.||+++|+ +.+..++..
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~ 303 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSN 303 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 77666666666666666777888888777899999998876433 3455567789999999877 222222221
Q ss_pred ---HhHhcc-cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 016418 267 ---LFYGLA-WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTD 341 (390)
Q Consensus 267 ---~~~~~~-~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~ 341 (390)
...... ++.+... ..++..++.+...+...++..+..+++.+++.+|+.+...++|..+++.+.|.+.|.. |++
T Consensus 304 l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~ 382 (491)
T PRK11010 304 AGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWP 382 (491)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChH
Confidence 122222 2333322 3344455556566667888889999999999999999999999999999999999976 554
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhhcccc
Q 016418 342 APFNCKGFSIIVASICLMVSLSCACMLDT 370 (390)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (390)
. .|.+.+++.+.+.+.....++
T Consensus 383 ~-------~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 383 T-------FYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHh
Confidence 4 345566666666555544443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-23 Score=182.76 Aligned_cols=288 Identities=9% Similarity=-0.000 Sum_probs=193.7
Q ss_pred HHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhcc
Q 016418 24 AEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQ 103 (390)
Q Consensus 24 ~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~ 103 (390)
......|.+|.+.++. |.+ ..+.|++.+.+.++..+++++.|+++||+|||+++..+.+...++.+.. ..+
T Consensus 15 ~~~~~~~~lp~l~~~~---~~s-----~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~ 85 (355)
T TIGR00896 15 ALTSVGPLLPQIRSAL---GMS-----FSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP 85 (355)
T ss_pred ccccCcccHHHHHHHh---CCC-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc
Confidence 3455678888877554 444 3666999999999999999999999999999999999998888887777 677
Q ss_pred CchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------HH-----------HHHH
Q 016418 104 SQEFVYAYYVLRTISYIISQGSIFCIAVAYA--------------------------------VS-----------IALL 140 (390)
Q Consensus 104 ~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------------------------~~-----------~~~~ 140 (390)
+ .+.+++.|++.|+ +.+...+....++ +. ....
T Consensus 86 ~---~~~l~~~~~~~g~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~ 161 (355)
T TIGR00896 86 G---TALLFAGTALIGV-GIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWA 161 (355)
T ss_pred c---HHHHHHHHHHHHH-HHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 7 8889999999998 4444333322222 00 0001
Q ss_pred HHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHH
Q 016418 141 IFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYL 220 (390)
Q Consensus 141 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (390)
.+..+.....+|+.++++++++ . ....+ .++.+|+|.++...+..++....+.....++|.|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 224 (355)
T TIGR00896 162 LPALLALLAWIPQVRRRVAANQ------T-------TTRLT----PVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAIL 224 (355)
T ss_pred HHHHHHHHHHhhhhccccCCCC------C-------CCCCC----CchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112223444322111100 0 00001 13345678877777766666777778888999999
Q ss_pred hhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHH-HHH----HHHHHHHHHHhHhcccchhHHHHHHHHHHHHhhhH
Q 016418 221 KAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLN-PFV----ALLASIAYALFYGLAWASWVPYLSASFGVIYVLVK 292 (390)
Q Consensus 221 ~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 292 (390)
++. |+++.+.+.+.+..++... +..+++.||++ ||. +....+++.+.+.+.++.+......+.|++.+...
T Consensus 225 ~~~-g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~ 303 (355)
T TIGR00896 225 ISH-GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGGAF 303 (355)
T ss_pred HHc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHh
Confidence 874 9999888888776655544 45578899984 443 33444445544444443333334567788888888
Q ss_pred HHHHHHHhhcc-CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 293 PSTYAIISKAS-GLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 293 ~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
|...+...+.. +++++++..++.+....++..++|.+.|.+.|+.++++.
T Consensus 304 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 304 PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 88777766544 456779999999999999999999999999998855554
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-21 Score=175.43 Aligned_cols=319 Identities=18% Similarity=0.195 Sum_probs=225.8
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHH
Q 016418 13 HLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTT 92 (390)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~ 92 (390)
.+....+...++.....+..|.+.++. |.+ ..+.+++.+...++..+++++.|+++||+|||+.+..+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~ 74 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDL---GLS-----ASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLF 74 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHc---CCC-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHH
Confidence 455677788888888999999887554 333 355699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-----------------HHHHHH-HHHHHHHHHhcccC
Q 016418 93 IVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-----------------VSIALL-IFVPVYMQFFLVET 154 (390)
Q Consensus 93 ~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-----------------~~~~~~-~~~~~~~~~~~~e~ 154 (390)
.++.+...+.++ ++.+++.|++.|+ +.+...+...+++ ....+. .+...+.....+.
T Consensus 75 ~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~- 149 (352)
T cd06174 75 ALGSLLLAFASS---LWLLLVGRFLLGL-GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES- 149 (352)
T ss_pred HHHHHHHHHhcc---HHHHHHHHHHHHc-ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999988 9999999999999 5466555555554 000000 0000111111110
Q ss_pred CCCCcccccccccccccccccccccccHHH-HHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHH
Q 016418 155 VESAPRKDQESSGLKKAVNVLDRRYKSMRD-AALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSE 233 (390)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 233 (390)
..++. . - -.......-. ...... .|.++...+..++..........+.|.+.++.+|.+..+.+.
T Consensus 150 ~~~~~--~----------~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (352)
T cd06174 150 LGWRW--L----------F-LILAILGLLLALLLLFL-LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGL 215 (352)
T ss_pred hhHHH--H----------H-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 00000 0 0 0000000000 000011 167777888888888888999999999999888889988888
Q ss_pred HHHHHHHHHH---HHHHHHHhhHHHHH-----HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccC
Q 016418 234 ILMMVGIGSI---VSQILVLPLLNPFV-----ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASG 304 (390)
Q Consensus 234 ~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~ 304 (390)
.....++... ...+.+.||.+||+ +.....++.......++.+... ..++.+.+.+...+...++..|..|
T Consensus 216 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 295 (352)
T cd06174 216 LLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAP 295 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Confidence 7766665554 44477889998775 4455555666666666655554 6678899999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhh
Q 016418 305 LNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCAC 366 (390)
Q Consensus 305 ~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (390)
+++|++.+|+.+...+++..++|.+.|.+.+.. +++. .+.+.+++.+++.+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~-------~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 296 PEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGG-------VFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-Ccch-------HHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999999999865 5554 33556666555555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=189.40 Aligned_cols=334 Identities=14% Similarity=0.071 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhcCCCCC---CcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHH
Q 016418 20 VHWVAEAMTVSVLVDVVTNALCPGQP---TCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPF 96 (390)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~l~~g~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~ 96 (390)
+..+..+...+.+|....+. +.+ +.+.+..+.|++.+++.++..++++++|+++||+|||+++..+.++..++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 115 (481)
T TIGR00879 39 MFGYDTGVIGGALALPAFEF---KFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGA 115 (481)
T ss_pred hcccccchhhhhhhcHHHHH---hcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHH
Confidence 33344455666666555443 222 122445677999999999999999999999999999999999999999998
Q ss_pred HHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH----------------------------HHH-----------
Q 016418 97 TLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA----------------------------VSI----------- 137 (390)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i----------------------------~~~----------- 137 (390)
+++.+..+...++.+++.|+++|+ +.+...+...+++ ..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 194 (481)
T TIGR00879 116 ILMGLAAFALSVEMLIVGRVLLGI-GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG 194 (481)
T ss_pred HHHHHhccccchHHHHHHHHHHHh-hhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 888665443226689999999999 6566666666666 111
Q ss_pred --------HHHHHHHHHHHHhcccCCCCCccccc-ccccc-------cccccccc----------------cccccHHHH
Q 016418 138 --------ALLIFVPVYMQFFLVETVESAPRKDQ-ESSGL-------KKAVNVLD----------------RRYKSMRDA 185 (390)
Q Consensus 138 --------~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~-------~~~~~~~~----------------~~~~~~~~~ 185 (390)
.+..+..++..+++||+++...+++. ++.++ ..++.... ......++.
T Consensus 195 w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (481)
T TIGR00879 195 WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSL 274 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence 11222223344566776532110000 00000 00000000 000011111
Q ss_pred HHhhhc---CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHH---HHHHHHHHHHHHhhHHHHH--
Q 016418 186 ALMVVS---SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMV---GIGSIVSQILVLPLLNPFV-- 257 (390)
Q Consensus 186 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~-- 257 (390)
....+ ++.++...+..+...........+.|.+.++ +|++..+.+...... ++.+.+..+++.||++||+
T Consensus 275 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 352 (481)
T TIGR00879 275 -FSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL 352 (481)
T ss_pred -HhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11111 1222222222332233334445556666554 588886666555433 3444556689999999888
Q ss_pred --HHHHHHHHHHhHh---c--ccc-----hhH-HHHHHHHHHHHhh-hHHHHHHHHhhccCCCchhhHHHHHHHHHHHHH
Q 016418 258 --ALLASIAYALFYG---L--AWA-----SWV-PYLSASFGVIYVL-VKPSTYAIISKASGLNNQGKAQGFIAGVQSISS 323 (390)
Q Consensus 258 --~~~~~~~~~~~~~---~--~~~-----~~~-~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 323 (390)
+....+++.+.+. . .++ .+. .....+.+.+.+. ..+....+..|..|+++|+++.|+.+...+++.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~ 432 (481)
T TIGR00879 353 LIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLAN 432 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHH
Confidence 4344444444333 1 111 122 2222333333332 346666778999999999999999999999999
Q ss_pred hhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhc
Q 016418 324 LLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACM 367 (390)
Q Consensus 324 ~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (390)
+++|.+.+.+.+.. ++...+ .+.+++.+++.+....
T Consensus 433 ~i~~~~~~~~~~~~-~~~~~f-------~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 433 FIVGFLFPTMLESI-GVGGVF-------IFFGGLNVLGLIFVYF 468 (481)
T ss_pred HHHHHHHHHHHHhc-Ccccee-------hhHHHHHHHHHHHHhe
Confidence 99999999999876 555544 3445554544444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-22 Score=202.69 Aligned_cols=316 Identities=13% Similarity=0.045 Sum_probs=215.0
Q ss_pred CcccccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCC
Q 016418 2 ASGFWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGR 81 (390)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr 81 (390)
.+...+++.+..++...++..++.......+..++.+.+ +. +.+....+++.+++.++..++++++|+++||+||
T Consensus 2 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~gr 76 (1146)
T PRK08633 2 MKNLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAY--DG---SEQVILTAIVNALFLLPFLLLSSPAGFLADKFSK 76 (1146)
T ss_pred ccchhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--Cc---ccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccH
Confidence 344556677777888888877776555444444443332 22 3334567999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHH---hccCchhhHHHHHHHHHHhhcccchHHHHHHHHH------------------------
Q 016418 82 KPLLLITVSTTIVPFTLLA---FNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------ 134 (390)
Q Consensus 82 k~~l~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------ 134 (390)
|++++.+.++..+..++.. ..++ ++.+++.|+++|+ +.+...+...+++
T Consensus 77 k~~l~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~ 152 (1146)
T PRK08633 77 NRVIRIVKLFEVGLTLLIVLAYYLGW---FWLAFAVTFLLGA-QSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAI 152 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHH
Confidence 9999998877665554433 4567 8999999999999 5566667666666
Q ss_pred ---------HHHH---------------------HHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHH
Q 016418 135 ---------VSIA---------------------LLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRD 184 (390)
Q Consensus 135 ---------~~~~---------------------~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (390)
+... ...+..++..+.+||.++....++ +. + ........++
T Consensus 153 ~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~---~~~~~~~~~~ 223 (1146)
T PRK08633 153 LAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF-----DK-K---KYLFPKLLWR 223 (1146)
T ss_pred HHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc-----cc-c---ccccHHHHHH
Confidence 1000 000111112233455443322111 00 0 0011123445
Q ss_pred HHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCch-hHHHHHHHHHHHHH---HHHHHHHhhHHHHH---
Q 016418 185 AALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKN-QFSEILMMVGIGSI---VSQILVLPLLNPFV--- 257 (390)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~~~~~~~~---~~~~~~~~~~~~~~--- 257 (390)
.++.++++|.++...+..++..........++|.|+++.+|++.. ..+++.+..+++.. +..+.+.||.+++.
T Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~ 303 (1146)
T PRK08633 224 NLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVP 303 (1146)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchh
Confidence 567788889888887777777777777888999999998899988 88888766665443 34466666665554
Q ss_pred -HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 258 -ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 258 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+.+..+++.+.+....+.+..+ ..++.|++.+...+...+++++..|++.||+++|+.+.+..++..+++.+++.+..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 304 LGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444 55778888888888889999999999999999999999999999888877776654
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=180.10 Aligned_cols=317 Identities=17% Similarity=0.138 Sum_probs=221.4
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHH
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLL 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l 85 (390)
++++.+..+++.+.+.....+.+..+.+..-... +.++ ...|++.+.+.+.+.+++|+.|+++|||+||+++
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~f---ni~~-----s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~ 101 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYF---NISD-----SELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI 101 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhc---CCCc-----hhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE
Confidence 3455677888889999999888877777554222 4444 5559999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------
Q 016418 86 LITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------- 134 (390)
Q Consensus 86 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------- 134 (390)
..|..++.++.+.++++.. +|++.++|.+.|+ |.+.+.|.+++++
T Consensus 102 ~vG~~iW~~Av~~~~fs~~---Fwq~~l~R~~vGi-GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvg 177 (493)
T KOG1330|consen 102 AVGIFIWTLAVFASGFSNH---FWQVLLCRGFVGI-GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVG 177 (493)
T ss_pred eeHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcc-chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEee
Confidence 9999999999999999988 9999999999999 8888889999988
Q ss_pred ---------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHH
Q 016418 135 ---------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGIS 199 (390)
Q Consensus 135 ---------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (390)
..+++.++..++..++.+|+++...++...+.. ..+...+..+.++.+.++|.+....
T Consensus 178 s~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~-------~~~~~ts~~kDl~~l~~~~v~v~~s 250 (493)
T KOG1330|consen 178 SVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENK-------MVKPFTSVWKDLKVLAKIKVFVLSS 250 (493)
T ss_pred eeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCc-------CCCCccchHHHHHHHHccCceeeeh
Confidence 777888888888888888876543222111000 0111123333445566677777777
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhh---cCCCch---hHHHHHHHHHHHHHHHHHHHHhhHHHHH---------------H
Q 016418 200 FVSFFYKLGMSGISAVLLFYLKAV---FGFNKN---QFSEILMMVGIGSIVSQILVLPLLNPFV---------------A 258 (390)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 258 (390)
+.+....+..+.+.-+.|.+.... .|.+.. ..+.+....+..+.+.++.++|++.|+. +
T Consensus 251 l~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g 330 (493)
T KOG1330|consen 251 LGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALG 330 (493)
T ss_pred HHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhh
Confidence 777666666666666666555332 232222 3445556677778888899999977654 2
Q ss_pred HHHHHHHHHhHhcccc--hhHHHHHHHHHHHHhhhHHH-HHHHHhhccCCCchhhHHHHHHHHHHH-HHhhhhhhhhhhh
Q 016418 259 LLASIAYALFYGLAWA--SWVPYLSASFGVIYVLVKPS-TYAIISKASGLNNQGKAQGFIAGVQSI-SSLLSPLAMSPLT 334 (390)
Q Consensus 259 ~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~g~~~~g~l~ 334 (390)
....+..+.+.....+ .+..+..+++|......... ..-+..+.+|+++|.+++++...+..+ |.+-+|.+.|.+.
T Consensus 331 ~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGils 410 (493)
T KOG1330|consen 331 APLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILS 410 (493)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHH
Confidence 2222222222222222 22233445555555554333 334778999999999999998888765 5556666999999
Q ss_pred cccccCC
Q 016418 335 SWFLSTD 341 (390)
Q Consensus 335 ~~~~~~~ 341 (390)
|+..++.
T Consensus 411 d~l~g~~ 417 (493)
T KOG1330|consen 411 DKLRGYK 417 (493)
T ss_pred HHhhCCC
Confidence 9876655
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=178.66 Aligned_cols=300 Identities=14% Similarity=0.065 Sum_probs=182.6
Q ss_pred HHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHH
Q 016418 21 HWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLA 100 (390)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~ 100 (390)
+.++.....+..+.+.++... +.++.+..........+...++..+++++.|+++||+|||+++..+.++..++.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 5 EWFDFYLYGFAAVLVFHTFFP-PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 344444455555544444320 1123222222222233445556668899999999999999999999999999999999
Q ss_pred hccCchh-----hHHHHHHHHHHhhcccchHHHHHHHHH-------------------------HHHH------------
Q 016418 101 FNQSQEF-----VYAYYVLRTISYIISQGSIFCIAVAYA-------------------------VSIA------------ 138 (390)
Q Consensus 101 ~~~~~~~-----~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------~~~~------------ 138 (390)
++++... .+.+++.|+++|+ +.+...+...+++ +...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 84 LLPSYATIGIWAPILLLLARLIQGF-SLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hCCChhhhHHHHHHHHHHHHHHHHh-hccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9988211 1257899999999 5455444444444 0000
Q ss_pred ------------HHHHH---HHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcc--hhHHHHH
Q 016418 139 ------------LLIFV---PVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPT--LRGISFV 201 (390)
Q Consensus 139 ------------~~~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 201 (390)
+..+. ........||+++++++++ + +++.+.+.++ ..++++ ++.....
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~----~~~~~~~~~~~~~~~ 227 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE-----K------HKKKRGPIRE----TLTKHRKPFLLGLGL 227 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh-----c------cccccCCHHH----HHHhchHHHHHHHHH
Confidence 00001 1111122344332111110 0 0011112222 223333 6666666
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH-----HHHHHHHHH-HhHhc-
Q 016418 202 SFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV-----ALLASIAYA-LFYGL- 271 (390)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~- 271 (390)
.++..........+.|.|.++.+|.++.+.+.......+... ...+++.||++||+ +........ .....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T TIGR00883 228 VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL 307 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777788899999988889998888777655544443 45588999999888 111111121 11111
Q ss_pred -ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHH-HHHHHHHHhhhhhhhhhhhccc
Q 016418 272 -AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFI-AGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 272 -~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
.++.+... ...+.+++.+...+..++.+.|.+|+++|+++.|+. +....+|..++|.+.|.+.|+.
T Consensus 308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~ 376 (394)
T TIGR00883 308 DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT 376 (394)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc
Confidence 23344443 446677777788888999999999999999999985 4556688889999999999986
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-22 Score=182.11 Aligned_cols=300 Identities=15% Similarity=0.150 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccc----cCC-chHHHHHHHHH
Q 016418 18 LCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADE----YGR-KPLLLITVSTT 92 (390)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr----~Gr-k~~l~~~~~~~ 92 (390)
.+...+..++..+.++.++.+.+ | .+..+.|++.++..+..++..|+.|+++|| +|| |+.++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~--g-----~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~ 80 (437)
T TIGR00792 8 DFGNNFIFAIVSTYLLFFYTDVL--G-----LSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPF 80 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcc--C-----CCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHH
Confidence 34455666777777777775543 4 344777999999999999999999999997 677 45677888888
Q ss_pred HHHHHHHHhccCch---hhHHHHHHHHHHhhcccchHHHHHHHHH-----------------------------------
Q 016418 93 IVPFTLLAFNQSQE---FVYAYYVLRTISYIISQGSIFCIAVAYA----------------------------------- 134 (390)
Q Consensus 93 ~i~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i----------------------------------- 134 (390)
+++.+++...++.. ..+.+++.+++.++ +.+.......++.
T Consensus 81 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l 159 (437)
T TIGR00792 81 SIVLVLLFTTPDFSATGKLVYAYITYILLGL-FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPL 159 (437)
T ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777765421 13445555666555 2111111111111
Q ss_pred ------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchh
Q 016418 135 ------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLR 196 (390)
Q Consensus 135 ------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (390)
+.+++..+..+...+..||+++++++ + .+++.+.++.++.++++|.++
T Consensus 160 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~-------~-------~~~~~~~~~~~~~l~~~~~~~ 225 (437)
T TIGR00792 160 VSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPK-------N-------IEKKLSLKQIFKALFKNDQLL 225 (437)
T ss_pred HHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCc-------c-------cccCCCHHHHHHHHhCCHHHH
Confidence 11111111111222233443211000 0 011124567778888999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHH---HHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMV---GIGSIVSQILVLPLLNPFV----ALLASIAYALFY 269 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 269 (390)
...+..++..........+.+.|.++.++ ++...+.+.... ++.+.+..+++.||++||+ +....+++.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 304 (437)
T TIGR00792 226 ILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF 304 (437)
T ss_pred HHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 88888888877777776676777776666 444555444333 3444455678899999887 444444454444
Q ss_pred hcc-cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccC-------CCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 016418 270 GLA-WASWVPY-LSASFGVIYVLVKPSTYAIISKASG-------LNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLST 340 (390)
Q Consensus 270 ~~~-~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~ 340 (390)
.+. ++.+... ..++.+++.+...+..+++.+|..| ++.+|+.+|+.+....++..+++.+.|.+.+.. ++
T Consensus 305 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~-G~ 383 (437)
T TIGR00792 305 FFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII-GY 383 (437)
T ss_pred HHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 443 2333333 4567788888888888899888765 456799999999999999999999999999876 55
Q ss_pred C
Q 016418 341 D 341 (390)
Q Consensus 341 ~ 341 (390)
+
T Consensus 384 ~ 384 (437)
T TIGR00792 384 V 384 (437)
T ss_pred C
Confidence 4
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-20 Score=170.17 Aligned_cols=317 Identities=14% Similarity=0.116 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhccccccc-----CCch-HHHHH
Q 016418 15 LLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEY-----GRKP-LLLIT 88 (390)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----Grk~-~l~~~ 88 (390)
....+..++..+...+.+|.|+++. |.+. .++|++..+... .+..+++|+++||+ |||| ++..+
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~---g~~~-----~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~ 74 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVE---GLDI-----QTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLT 74 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHc---CCCH-----HHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHH
Confidence 3445666778888999999999876 6555 555888666654 68899999999999 8765 78888
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH----------------------------------
Q 016418 89 VSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------- 134 (390)
Q Consensus 89 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------- 134 (390)
.+..+++....++.++...++.+++..++.+.+. +...+...+++
T Consensus 75 ~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l 153 (402)
T PRK11902 75 QVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLS-ASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL 153 (402)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 8888888888777743222677777777777633 44555555555
Q ss_pred ------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHH
Q 016418 135 ------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVS 202 (390)
Q Consensus 135 ------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (390)
+.+++.++. .+..+..||+++++++++ +.+++.++.++.++|||.++...+..
T Consensus 154 ~~~~~gw~~~f~i~a~~~l~~-~l~~~~~~e~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~l~~~ 218 (402)
T PRK11902 154 ADRVLGWGNTYLLMAGLMLAG-ALTTLWAPEPEVPARPPR--------------SLGEAVVGPLRDFFSRRGAWALLLLI 218 (402)
T ss_pred HhcccCHHHHHHHHHHHHHHH-HHHHHhcCCCcccccccc--------------hhHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 111122221 122344565433211100 00012345567788899988877776
Q ss_pred HHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHH----HHHHHHHHHHHhhHHHHH----HHHHHHHH---HHhHhc
Q 016418 203 FFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVG----IGSIVSQILVLPLLNPFV----ALLASIAY---ALFYGL 271 (390)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~ 271 (390)
++..........+.+.++.+.+|+++.+.+++....+ +.+.+..+++.||+++|+ +.....+. +.....
T Consensus 219 ~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~ 298 (402)
T PRK11902 219 VLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV 298 (402)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666554444455566677777999999988875433 445556689999998877 22222222 222233
Q ss_pred c-cchhHHH-HHH----HHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCC
Q 016418 272 A-WASWVPY-LSA----SFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFN 345 (390)
Q Consensus 272 ~-~~~~~~~-~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~ 345 (390)
. ++.+..+ ... ..+++.+...+....++++..|. +..+..+...+++..+++.++|.++|.. |+..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~G~l~~~~-G~~~--- 370 (402)
T PRK11902 299 TPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSA----TQYALLSALASVGRVYVGPTSGYLVEAY-GWPG--- 370 (402)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHH---
Confidence 3 3444443 222 33444445555556666666654 4456666666778877777899999987 6654
Q ss_pred CCchHHHHHHHHHHHHHHhhhccc
Q 016418 346 CKGFSIIVASICLMVSLSCACMLD 369 (390)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~ 369 (390)
.+.+.+++.+++.++.++.+
T Consensus 371 ----~f~~~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 371 ----FYLMTVVIALPGLALLWLMR 390 (402)
T ss_pred ----HHHHHHHHHHHHHHHHHHHh
Confidence 34556666666655554433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=171.10 Aligned_cols=298 Identities=13% Similarity=0.043 Sum_probs=198.6
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHH
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITV 89 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~ 89 (390)
.+..+....+..++..++..|.+|.+.++. |. +..+.|++.+.+.+++.+++++.|++.||+|||+++..+.
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~---~~-----s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~ 75 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQFQQAF---TL-----TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGL 75 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 355667777788888888999999886443 43 3466799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh---ccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------HHHHH------
Q 016418 90 STTIVPFTLLAF---NQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------VSIAL------ 139 (390)
Q Consensus 90 ~~~~i~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------~~~~~------ 139 (390)
++.+++.++... .++ ++.+++.|++.|+ +.+...+....++ +...+
T Consensus 76 ~l~~~g~~l~~~~~~~~~---~~~~l~~~~l~G~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 76 FLYALGAFLFWPAAEIMN---YTLFLVGLFILTA-GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred HHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHh-hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887654 356 8999999999999 6566655555544 00000
Q ss_pred -----------------------------------------HHHHHH--HHHHhcccCCCCCcccccccccccccccccc
Q 016418 140 -----------------------------------------LIFVPV--YMQFFLVETVESAPRKDQESSGLKKAVNVLD 176 (390)
Q Consensus 140 -----------------------------------------~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 176 (390)
..+..+ +.....++++. ++ ++ +
T Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~-~~-~~-----~-------- 216 (410)
T TIGR00885 152 QLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPAL-NH-SD-----A-------- 216 (410)
T ss_pred HHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc-cc-----c--------
Confidence 000001 11111111110 00 00 0
Q ss_pred cccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhc-CCCchhHHHHHH---HHHHHHHHHHHHHHhh
Q 016418 177 RRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVF-GFNKNQFSEILM---MVGIGSIVSQILVLPL 252 (390)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~---~~~~~~~~~~~~~~~~ 252 (390)
++.+.++..+.++|+|+++...+..++.........++++.|.++.. +.+....+...+ .....+-+.++++.||
T Consensus 217 -~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r 295 (410)
T TIGR00885 217 -KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY 295 (410)
T ss_pred -ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112223345667888888888888887777788899999987642 333222222221 2223344566899999
Q ss_pred HHHHH----HHHHHHHHHHhHhcccchhHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhh
Q 016418 253 LNPFV----ALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPL 328 (390)
Q Consensus 253 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~ 328 (390)
+++|+ ......+..++....++....+...+.+++.+..+|..++...+..+++.+....++... .+|+.+.|+
T Consensus 296 ~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~ 373 (410)
T TIGR00885 296 LAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPP 373 (410)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHH
Confidence 98887 444444444555555554445566788899999999999999999986654444444443 399999999
Q ss_pred hhhhhhccc
Q 016418 329 AMSPLTSWF 337 (390)
Q Consensus 329 ~~g~l~~~~ 337 (390)
+.|.+.|..
T Consensus 374 l~G~~~d~~ 382 (410)
T TIGR00885 374 LQGFIIDMK 382 (410)
T ss_pred HHHHHHHHh
Confidence 999999953
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-21 Score=174.33 Aligned_cols=295 Identities=15% Similarity=0.137 Sum_probs=193.2
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHH
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITV 89 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~ 89 (390)
.++..++..+..........|.+|.++++.+ |.+ ..+.|++.+++.++..+++++.|+++||+|||+.+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s-----~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 74 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDL--GLS-----TAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL 74 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHh--CCC-----HHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 4566777788888888888999997554443 444 356699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc-CchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------H
Q 016418 90 STTIVPFTLLAFNQ-SQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------V 135 (390)
Q Consensus 90 ~~~~i~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------~ 135 (390)
++..++.+++++++ + ++.+++.|+++|+ +++.. +....++ +
T Consensus 75 ~~~~i~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 75 LLLAIPCLWAGLAVQS---YSVLLLLRLFIGI-AGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred HHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-hchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999998 8 9999999999999 43443 3444444 0
Q ss_pred HH-------------------H----HHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcC
Q 016418 136 SI-------------------A----LLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSS 192 (390)
Q Consensus 136 ~~-------------------~----~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (390)
.. . +..+..++.....+|++++++++++.+.++. .. ..+.+.. +..+..+++
T Consensus 150 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~-~~~~~~~~~ 224 (366)
T TIGR00886 150 IGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGA--RW--SVGTGAL-GDQLKVFRD 224 (366)
T ss_pred HHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccc--cc--cccchhH-HHHHHHHhc
Confidence 00 0 0111112222334554432211110000000 00 0000111 123445668
Q ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHH
Q 016418 193 PTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAY 265 (390)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~ 265 (390)
|+++...+..++..........+.|.|+++.+|+++.+.+.+.....+.+. +..+++.||++||+ +......+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~ 304 (366)
T TIGR00886 225 RHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMG 304 (366)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHH
Confidence 888888777777777777888999999999899999888876655544443 45578999999876 32223333
Q ss_pred HHhHh--ccc--chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHH
Q 016418 266 ALFYG--LAW--ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSIS 322 (390)
Q Consensus 266 ~~~~~--~~~--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~ 322 (390)
..++. ..+ +.+..+ ...+...+.+...+...+...+..| +++|+++|+.+...++|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 305 AFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 22222 222 333322 3344555566666667777888887 79999999998887754
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=173.22 Aligned_cols=322 Identities=10% Similarity=-0.007 Sum_probs=208.7
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccc-cCCchH
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADE-YGRKPL 84 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grk~~ 84 (390)
++++.++.+....+...++.....+.+|.|+.+. .+.+.+..+.|++.+.+.++..++++++|+++|| +|||++
T Consensus 7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~-----~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~ 81 (475)
T TIGR00924 7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ-----AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT 81 (475)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH
Confidence 4567788888899999999999999999998653 1234445677999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH------------------------------
Q 016418 85 LLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------ 134 (390)
Q Consensus 85 l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------ 134 (390)
+.++.++.+++.++.+++++ ++.+++.|.+.|+ +.|...+...+++
T Consensus 82 l~~~~~~~~~g~~~~~~~~~---~~~~~~~~~l~g~-g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig 157 (475)
T TIGR00924 82 MVLGGIVLMLGHFMLAMSIY---PDLIFYGLGTIAV-GSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS 157 (475)
T ss_pred HHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence 99999999999999999888 8888899999998 5555444443333
Q ss_pred -----------------HHHHHHHHHHHHHHHhcccCCCCCccccccccccccccccc-------------------ccc
Q 016418 135 -----------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVL-------------------DRR 178 (390)
Q Consensus 135 -----------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 178 (390)
....+..+..++.+...++..++.++++.+..+++++.... ...
T Consensus 158 ~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
T TIGR00924 158 PLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVV 237 (475)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 11111111222222333322211110000000000000000 000
Q ss_pred ccc-----------------HHH-HHHhh--hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCch----hHHHH
Q 016418 179 YKS-----------------MRD-AALMV--VSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKN----QFSEI 234 (390)
Q Consensus 179 ~~~-----------------~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~g~~ 234 (390)
..+ .++ ..+.. .|...+..+.+...+.+..+....+.++.+.++..+.+.. ..+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~ 317 (475)
T TIGR00924 238 IANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWF 317 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHH
Confidence 000 000 00001 1112344455556666777777778888888775454422 25667
Q ss_pred HHHHHHHHHHHHHHHH---hhHHHHH-----------HHHHHHHHHHhHhc---------ccchhHHH-HHHHHHHHHhh
Q 016418 235 LMMVGIGSIVSQILVL---PLLNPFV-----------ALLASIAYALFYGL---------AWASWVPY-LSASFGVIYVL 290 (390)
Q Consensus 235 ~~~~~~~~~~~~~~~~---~~~~~~~-----------~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~g~~~~~ 290 (390)
.+..++..++.+..+. .++.||. ++++.++++..... ..+.|..+ ..++.+++...
T Consensus 318 ~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~ 397 (475)
T TIGR00924 318 QSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELM 397 (475)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 7777766665543322 2444431 66666666666553 23544444 66899999999
Q ss_pred hHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 291 VKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
..|..+++..+..|++.||+.+|+......+|..+++.+.....+.
T Consensus 398 ~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~ 443 (475)
T TIGR00924 398 ISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP 443 (475)
T ss_pred HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999888888776554
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-21 Score=171.49 Aligned_cols=290 Identities=17% Similarity=0.194 Sum_probs=183.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccc
Q 016418 45 PTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQG 124 (390)
Q Consensus 45 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g 124 (390)
++.+.+..| +.+.+++.+|.++++...|.++||+|||..+..+.++..++.++..++.....+.+++++|++.|+ ..|
T Consensus 54 s~~~~~~lw-S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl-~~g 131 (485)
T KOG0569|consen 54 SDSTLDLLW-SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGL-ACG 131 (485)
T ss_pred ChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HhH
Confidence 333344344 889999999999999999999999999999999999888888777765443349999999999999 556
Q ss_pred hHHHHHHHHH----------------------------------------------HHHHHHHHHHHHHHHhcccCCCCC
Q 016418 125 SIFCIAVAYA----------------------------------------------VSIALLIFVPVYMQFFLVETVESA 158 (390)
Q Consensus 125 ~~~~~~~~~i----------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~ 158 (390)
........|+ ....+..+..++...++||+|++-
T Consensus 132 l~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~L 211 (485)
T KOG0569|consen 132 LSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYL 211 (485)
T ss_pred HHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 6666666666 333344445566677899999862
Q ss_pred cc---cccc----------ccccccc-----ccccccccc-cHHHHHHhhhcCcchhHHHHHH----HHHHHH-hhhHHH
Q 016418 159 PR---KDQE----------SSGLKKA-----VNVLDRRYK-SMRDAALMVVSSPTLRGISFVS----FFYKLG-MSGISA 214 (390)
Q Consensus 159 ~~---~~~~----------~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~ 214 (390)
-. ++++ +++++++ ++.+.++.. .-+..+++++++|.++.-.... +...+. .+....
T Consensus 212 l~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~ 291 (485)
T KOG0569|consen 212 LIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFF 291 (485)
T ss_pred HHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHH
Confidence 11 1000 0000000 000000000 0111234556666655543333 222222 233333
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHH---HHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcc-----cc-hhHHH--
Q 016418 215 VLLFYLKAVFGFNKNQFSEILMMVG---IGSIVSQILVLPLLNPFV----ALLASIAYALFYGLA-----WA-SWVPY-- 279 (390)
Q Consensus 215 ~~~~~~~~~~g~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~-~~~~~-- 279 (390)
+...++++ .|+++.+..+.....+ +...+.+.++.||.|||. +...+.+..+++... .. .|..+
T Consensus 292 Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~ 370 (485)
T KOG0569|consen 292 YSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLC 370 (485)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444444 4888887666654444 445567789999999999 333333222222211 11 23332
Q ss_pred --HHHHHHHHHhh-hHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 280 --LSASFGVIYVL-VKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 280 --~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
..+.+.++.+. ..|..+-+.+|.+|++.|..++++...++.+..++-......+.+.+
T Consensus 371 i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~ 431 (485)
T KOG0569|consen 371 IAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI 431 (485)
T ss_pred HHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22344444444 57888999999999999999999999999999998888888888876
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-19 Score=159.37 Aligned_cols=317 Identities=13% Similarity=0.121 Sum_probs=189.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHH--HHHHHHHHHhHhhhhcc-cccccCCchHHHH
Q 016418 11 LLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQ--QTVVGVFKMVVLPLLGQ-LADEYGRKPLLLI 87 (390)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~G~-l~Dr~Grk~~l~~ 87 (390)
+..+....+..++..++..|.+|.+++|. |.+. .+.|++ .++..+...+.+|+++. .+||+||||..++
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~---g~~~-----~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~ 74 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRED---GAPL-----TALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL 74 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHc---CCCH-----HHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence 44556667888888999999999999776 5554 555886 46778889899999955 7999999888655
Q ss_pred HHHH-HHHHHHHHH-hccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------
Q 016418 88 TVST-TIVPFTLLA-FNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------- 134 (390)
Q Consensus 88 ~~~~-~~i~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------- 134 (390)
...+ ..+...... +........+++....+.+++. +...+...++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~ 153 (390)
T TIGR02718 75 PMQCLVSACLASLALVGPDVAGAGWAVGLLACASLAS-ATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT 153 (390)
T ss_pred HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 222222222 1111110222223333333311 22222222222
Q ss_pred --------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHH
Q 016418 135 --------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISF 200 (390)
Q Consensus 135 --------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (390)
+.+++.++..+.. ...+|+++++++++ . ...+.+++.+|+|.++....
T Consensus 154 ~~l~~~~gw~~~f~~~a~l~~~~~~~~-~~~~~~~~~~~~~~-------------~----~~~~~~~~~l~~~~~~~~~~ 215 (390)
T TIGR02718 154 LVLFGKFGQRPAFLLVACVPLASLVCV-LWLKDRAVASPEAP-------------L----ARRASLFRFFRRPLAWSLLA 215 (390)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHH-HHcCCCCcCccccc-------------h----hhHHHHHHHHcCcCHHHHHH
Confidence 2222333323333 23333222111000 0 00112355677888888888
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHH----HHHHHHHHHHhhHHHHH----HHHHHHHHH-HhHhc
Q 016418 201 VSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGI----GSIVSQILVLPLLNPFV----ALLASIAYA-LFYGL 271 (390)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~ 271 (390)
..++..........+.+.|++|. |+++++.|.+....+. .+.+..+++.||+++|+ +....+... .....
T Consensus 216 ~~~l~~~~~~~~~~~~~~~l~~~-G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~ 294 (390)
T TIGR02718 216 LALLSAMTAVSGFGLSKLYLVDA-GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQ 294 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhc-CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887888888999999885 9999999998765443 33445588899998887 222221111 11111
Q ss_pred -----ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCC-CchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 272 -----AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGL-NNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 272 -----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
.++.+..+ ...+.+++.+...+...+...+..++ +++|+.+++.+...++|..+||.++|.++|+. +++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~~-- 371 (390)
T TIGR02718 295 AAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYAG-- 371 (390)
T ss_pred HHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHH--
Confidence 11222222 22334555677777777777777765 88999999999999999999999999999987 6554
Q ss_pred CCCchHHHHHHHHHHHHHH
Q 016418 345 NCKGFSIIVASICLMVSLS 363 (390)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~ 363 (390)
.+.+.+++.+++..
T Consensus 372 -----~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 372 -----GFLSGTVLAVLAIL 385 (390)
T ss_pred -----HHHHHHHHHHHHHH
Confidence 33555555555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-20 Score=169.27 Aligned_cols=303 Identities=18% Similarity=0.201 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH-HhhcccchHHHHH
Q 016418 52 YISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTI-SYIISQGSIFCIA 130 (390)
Q Consensus 52 ~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l-~G~~~~g~~~~~~ 130 (390)
.+++|+.++......+..|+.+.+.||+|.|++.+.|.++..++.++..++++ +|++++..-+ .|+ |.+..+..+
T Consensus 81 ~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~---i~~l~lt~gvi~G~-G~~~~~~pa 156 (509)
T KOG2504|consen 81 SQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS---LWQLYLTFGVIGGL-GLGLIYLPA 156 (509)
T ss_pred cHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhc-cchhhhcch
Confidence 33599999999999999999999999999999999999999999999999999 8888776644 455 766666555
Q ss_pred HHHH--------------------------------------------HHHHHHHHHHHHHHHhcccCCCCCcc------
Q 016418 131 VAYA--------------------------------------------VSIALLIFVPVYMQFFLVETVESAPR------ 160 (390)
Q Consensus 131 ~~~i--------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~------ 160 (390)
...+ +.+.+.+-..+.....-|..++.+++
T Consensus 157 iviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~ 236 (509)
T KOG2504|consen 157 VVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLR 236 (509)
T ss_pred hhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhc
Confidence 4444 33333333333343433422221000
Q ss_pred --------------ccccc-----cc-----cccccccccccc-ccHHHHH----HhhhcCcchhHHHHHHHHHHHHhhh
Q 016418 161 --------------KDQES-----SG-----LKKAVNVLDRRY-KSMRDAA----LMVVSSPTLRGISFVSFFYKLGMSG 211 (390)
Q Consensus 161 --------------~~~~~-----~~-----~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (390)
....+ .. +...++++.+.. .+.+..+ ..++++|.++.+.+...+..+++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~ 316 (509)
T KOG2504|consen 237 NSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNV 316 (509)
T ss_pred cccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 00000 00 000000001000 0112222 3677899999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH------HHHHHHHHHHhHhcccchhHHH-HH
Q 016418 212 ISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV------ALLASIAYALFYGLAWASWVPY-LS 281 (390)
Q Consensus 212 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~ 281 (390)
...++|.|.++. |.+..+.+.+.++.++... +..|+++|+...++ +++..++.....++.++.+.++ ..
T Consensus 317 p~~~l~~~~~~~-g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~ 395 (509)
T KOG2504|consen 317 PFVYLPSYAKSL-GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFS 395 (509)
T ss_pred HHHHHHHHHhhc-CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999955 9999999999888887666 45589999877333 6667777777788888887776 77
Q ss_pred HHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHH
Q 016418 282 ASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLM 359 (390)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (390)
.++|++.+.........+.|..+.++...+.|+...++.++..+||++.|.+.|..++|...++..+...++.+.+..
T Consensus 396 ~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 396 ILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHH
Confidence 888999998888877899999999999999999999999999999999999999997788888776665555554433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-19 Score=161.47 Aligned_cols=185 Identities=16% Similarity=0.146 Sum_probs=142.4
Q ss_pred cHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHH---HHHHHHHHHHHHHHHHhhHHHH-
Q 016418 181 SMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEI---LMMVGIGSIVSQILVLPLLNPF- 256 (390)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~- 256 (390)
++++.+++++|+|.+...++..++..-+.+.+......|.++.+|++..+...+ ..+.++.+.+..+++.||++.|
T Consensus 269 ~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~ 348 (477)
T PF11700_consen 269 RLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT 348 (477)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 455667888899999999999999999999999999999999999999875544 4555566666778999999988
Q ss_pred -H----HHHHH-HHHHHhHh-------cccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHH
Q 016418 257 -V----ALLAS-IAYALFYG-------LAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSIS 322 (390)
Q Consensus 257 -~----~~~~~-~~~~~~~~-------~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~ 322 (390)
+ +++.. .+....+. -.++.|.++ ..++.|+..|..++...++.++..|+++.++.+|++.......
T Consensus 349 ~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s 428 (477)
T PF11700_consen 349 KRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS 428 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 4 22221 11111111 134556665 7789999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhcccccc
Q 016418 323 SLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEE 372 (390)
Q Consensus 323 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
..+||.+.|.+.+.+++.+.. +....++.+++.++....+.++
T Consensus 429 s~lGPll~g~i~~~tg~~r~g-------~~~l~~lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 429 SWLGPLLFGLITDATGSQRYG-------FLFLLVLFLIGLILLFFVDVEK 471 (477)
T ss_pred HHHHHHHHHHHHHHhCCchhH-------HHHHHHHHHHHHHHHhhccchh
Confidence 999999999999998555553 3445556666666665554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=155.35 Aligned_cols=315 Identities=15% Similarity=0.097 Sum_probs=209.3
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLI 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~ 87 (390)
+-.+..+....++.++......+.+|.+. +.++.+..+.+++..+++.++.+.+++.|++.+|+|+|+.++.
T Consensus 12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~--------~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~l 83 (422)
T COG0738 12 KLAFVLLTSLFFLWGFITCLNDILIPHLK--------EVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVL 83 (422)
T ss_pred eeHHHHHHHHHHHHHHHhhcchhhHHHHH--------HHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHH
Confidence 34455566666677777777888888664 3335555777999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------HHHHHHHHHHHH
Q 016418 88 TVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------VSIALLIFVPVY 146 (390)
Q Consensus 88 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------~~~~~~~~~~~~ 146 (390)
++.+++++..+..-+.+...+..++.+-++.|. |-+.....++.++ +.+.+..+. .
T Consensus 84 gL~l~avg~~lF~pAa~~~~y~~FL~~lFila~-Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~--g 160 (422)
T COG0738 84 GLLLYAVGAALFWPAASSKSYGFFLVALFILAS-GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLL--G 160 (422)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh-hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHH--H
Confidence 999999999988644333337888888888888 6667777777777 111111100 0
Q ss_pred HHHhccc-CCCCCcccc-------cc----------------------cccccccccccc-cccccHHHHHHhhhcCcch
Q 016418 147 MQFFLVE-TVESAPRKD-------QE----------------------SSGLKKAVNVLD-RRYKSMRDAALMVVSSPTL 195 (390)
Q Consensus 147 ~~~~~~e-~~~~~~~~~-------~~----------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 195 (390)
..+.+.+ .....++.. .. .+.++.+..++. .+.++ ....+++++|++
T Consensus 161 ~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~--~~~~~l~~~~~~ 238 (422)
T COG0738 161 SSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGS--AGLSSLFQNKHL 238 (422)
T ss_pred HHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccccc--chHHHHHhChHH
Confidence 0111100 000000000 00 000000000000 00011 034667789999
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHh
Q 016418 196 RGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALF 268 (390)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~ 268 (390)
+...+..|+.........++++.|+.+..|.+..+.+...+..-...++ .+..+.+|+...+ ..+...+.++.
T Consensus 239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~ 318 (422)
T COG0738 239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLA 318 (422)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997788888877766554443333 2233444555544 22233344445
Q ss_pred HhcccchhHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 269 YGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 269 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
..+.++.+.++..++.|.+.+..+|...+...+..| ++.. ..|..-.+..+|+++-|++.|++.|..
T Consensus 319 ~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts-~~s~~l~maivGGAiiP~l~G~i~d~~ 385 (422)
T COG0738 319 VALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTS-VGSGLLVMAIVGGAIIPPLQGVIADMF 385 (422)
T ss_pred HHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cccc-ccceeeeeheecchHHHHHHHHHHHhh
Confidence 556677777778899999999999999999999999 4443 444445667789999999999999987
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-19 Score=156.80 Aligned_cols=335 Identities=11% Similarity=0.088 Sum_probs=209.9
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHH
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLL 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l 85 (390)
.|+++.+......+...+.++...|.+|.++++.. |. +..++|.+.++..+...+.+|+.|.++||.|.||-+
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~--GL-----s~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~L 76 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVA--GL-----SGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHL 76 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-----CHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHH
Confidence 35667788888888899999999999999997633 44 446779999999999999999999999999966654
Q ss_pred HHHHHHHH---HHHHHHHhc----cCchhhHHHHHHHHHHhhcccchHHHHHHHHH------------------------
Q 016418 86 LITVSTTI---VPFTLLAFN----QSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------ 134 (390)
Q Consensus 86 ~~~~~~~~---i~~~~~~~~----~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------ 134 (390)
+....... .......+. .|. +...+++-+..|+. -....|...+++
T Consensus 77 l~~i~~l~~l~~pff~~v~~pll~~n~--~lg~iig~i~l~~~-f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai 153 (412)
T PF01306_consen 77 LWFIAILLLLFGPFFIYVFGPLLQSNF--WLGAIIGGIYLGLV-FNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAI 153 (412)
T ss_dssp HHHHHHHHHTCHHHHHHTHHHHHHTT---HHHHHHTTTTTTTT-TTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHH
Confidence 43332221 122222221 230 12222333333441 223346666666
Q ss_pred ------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchh
Q 016418 135 ------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLR 196 (390)
Q Consensus 135 ------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (390)
+.....++..++..+.-|+.+++.+..+. ... +++..+.++ ...++|+|++|
T Consensus 154 ~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~-~~~l~k~~~fw 223 (412)
T PF01306_consen 154 ASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA-----LGA----KKDKVSLKD-VLSLFKMRNFW 223 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT-----SSS----------HHH-HHHHTTSHHHH
T ss_pred HHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc-----ccc----CCCCCcHHH-HHHHhcchhHH
Confidence 11222222222222222222221111110 000 011113333 34567899999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcC---CCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFG---FNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYA 266 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~ 266 (390)
.+.+........+..+....+.|.+..++ .+....|++.+..-+... ....++.+|++.|+ +..+..+-.
T Consensus 224 ~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi 303 (412)
T PF01306_consen 224 FFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRI 303 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 99988888888888888888888876543 233456666655544443 34466777777777 555566677
Q ss_pred HhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHH-HHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 267 LFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFI-AGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 267 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
...++++++|.+. .-.+.++-.+.......-++++..|++..++.+.+. +...+++..+.+.+.|.++|+. |++.
T Consensus 304 ~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-G~~~-- 380 (412)
T PF01306_consen 304 IGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-GFQH-- 380 (412)
T ss_dssp HHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-HHHH--
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-CcHH--
Confidence 7888899888776 558999999999999999999999999999999885 5778999999999999999998 6554
Q ss_pred CCCchHHHHHHHHHHHHHHhhhcc
Q 016418 345 NCKGFSIIVASICLMVSLSCACML 368 (390)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
.+++.+.+.+...++..+.
T Consensus 381 -----tylimg~iv~~~~li~~f~ 399 (412)
T PF01306_consen 381 -----TYLIMGLIVLPFTLISAFT 399 (412)
T ss_dssp -----HHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHheee
Confidence 3355555555544444443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=167.93 Aligned_cols=305 Identities=13% Similarity=0.009 Sum_probs=187.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhccccccc----CCch-H
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEY----GRKP-L 84 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~----Grk~-~ 84 (390)
.......+.+...+..++..+.++.|+.+.+ |. +..++|.+.+...+..++..|+.|+++||. |||| .
T Consensus 9 ~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~--gl-----~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~ 81 (448)
T PRK09848 9 TIVGYSLGDVANNFAFAMGALFLLSYYTDVA--GV-----GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF 81 (448)
T ss_pred HHHhhccchHHhHHHHHHHHHHHHHHHHHHc--CC-----CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence 3344445666777777888888888886654 33 346779999999999999999999999986 7665 4
Q ss_pred HHHHHHHHHHHHHHHHhcc-Cc---hhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------
Q 016418 85 LLITVSTTIVPFTLLAFNQ-SQ---EFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------- 134 (390)
Q Consensus 85 l~~~~~~~~i~~~~~~~~~-~~---~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------- 134 (390)
+..+.+...+...+....+ .. ...+..+....+.++ +.+...+...++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~ 160 (448)
T PRK09848 82 LLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGL-CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV 160 (448)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHH-HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444433322111 10 001222222233333 1111211111111
Q ss_pred ---------------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHH
Q 016418 135 ---------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAAL 187 (390)
Q Consensus 135 ---------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (390)
+.+++..+..++.....||++++++ ++.+.++.++
T Consensus 161 ~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~------------------~~~~~~~~~~ 222 (448)
T PRK09848 161 CLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIV------------------AQPSLKISLQ 222 (448)
T ss_pred HHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCc------------------cCCCHHHHHH
Confidence 0000111111111112233211100 0124556677
Q ss_pred hhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHH---HHHHHHHHHHHHhhHHHHH----HHH
Q 016418 188 MVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMV---GIGSIVSQILVLPLLNPFV----ALL 260 (390)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~ 260 (390)
.++|||.++...+..++............|.|.++.+|.++...++..... .+.+....+.+.||+++|+ +..
T Consensus 223 ~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~ 302 (448)
T PRK09848 223 TLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGAL 302 (448)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 788999999998888888888888888888888888887665444433221 2223344467888888777 444
Q ss_pred HHHHHHHhHhccc--chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCC-------chhhHHHHHHHHHHHHHhhhhhhh
Q 016418 261 ASIAYALFYGLAW--ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLN-------NQGKAQGFIAGVQSISSLLSPLAM 330 (390)
Q Consensus 261 ~~~~~~~~~~~~~--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~~~~~g~~~~ 330 (390)
+..++.+.+.+.+ +.|..+ ..++.+++.+...+...++.+|..|++ ++|..+|+.+....+|..+|+.+.
T Consensus 303 ~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 303 LGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444433 344433 456778888888888899998888754 459999999999999999999999
Q ss_pred hhhhcccccCC
Q 016418 331 SPLTSWFLSTD 341 (390)
Q Consensus 331 g~l~~~~~~~~ 341 (390)
|.+.+.. |++
T Consensus 383 g~~l~~~-G~~ 392 (448)
T PRK09848 383 AFILGLS-GYI 392 (448)
T ss_pred HHHHHHc-CCC
Confidence 9998876 664
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-19 Score=151.97 Aligned_cols=335 Identities=15% Similarity=0.124 Sum_probs=217.9
Q ss_pred HHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCc-hHHHHHHHHHHHHHHHHHhccCc
Q 016418 27 MTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRK-PLLLITVSTTIVPFTLLAFNQSQ 105 (390)
Q Consensus 27 ~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk-~~l~~~~~~~~i~~~~~~~~~~~ 105 (390)
....++|.|.++....+..+...+..+.|...++..+..++.+|+.|.++|+.|+| +.+-....+..++..+..++++.
T Consensus 33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~ 112 (438)
T COG2270 33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPG 112 (438)
T ss_pred eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCC
Confidence 35566777777665221123334445569999999999999999999999999965 55556666667777777776653
Q ss_pred hhhHHHHHHHHHHhhcccchHHHHHHHHH---------------------HHHHHHHHHHHHHHHhcccCCCCCc-----
Q 016418 106 EFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------VSIALLIFVPVYMQFFLVETVESAP----- 159 (390)
Q Consensus 106 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------~~~~~~~~~~~~~~~~~~e~~~~~~----- 159 (390)
..++...+...+..+.. ........+++ +.+.+.++........-+++-....
T Consensus 113 s~~~~~l~~~il~~i~~-~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~ 191 (438)
T COG2270 113 SYLLLLLLFLILASIGF-EFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLP 191 (438)
T ss_pred chHHHHHHHHHHHHHhc-chhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccC
Confidence 33555666666666633 33333444554 2222222222222111111110000
Q ss_pred --cccccc--------------------cccccccccc-----ccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhH
Q 016418 160 --RKDQES--------------------SGLKKAVNVL-----DRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGI 212 (390)
Q Consensus 160 --~~~~~~--------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (390)
..+..+ .++..+..++ .+..+++++.++++++++++...+++.++..-+.+..
T Consensus 192 ~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~ti 271 (438)
T COG2270 192 PADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTI 271 (438)
T ss_pred ccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHH
Confidence 000000 0000000001 1222345666788889999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhHHHH---HHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchh-HHHHHHHH
Q 016418 213 SAVLLFYLKAVFGFNKNQFSEI---LMMVGIGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASW-VPYLSASF 284 (390)
Q Consensus 213 ~~~~~~~~~~~~g~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 284 (390)
......|....+|++..+...+ ..+.++.+.+..+++.+|++.|. +++...+..+...+..... ......+.
T Consensus 272 l~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~ 351 (438)
T COG2270 272 LAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLV 351 (438)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 9999999998999999876554 45566666677788888888887 5444444443333333333 33467899
Q ss_pred HHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHh
Q 016418 285 GVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSC 364 (390)
Q Consensus 285 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (390)
|...|..+....++..+.+|+++.++.+|+++...+.++..||.+.+.+.+.+++.+.. +....++..++...
T Consensus 352 g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g-------~~~i~vll~iGl~~ 424 (438)
T COG2270 352 GTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG-------VLSIIVLLLIGLLL 424 (438)
T ss_pred HHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH-------HHHHHHHHHhhHhh
Confidence 99999999999999999999999999999999999999999999999999988554442 23344455555555
Q ss_pred hhccc
Q 016418 365 ACMLD 369 (390)
Q Consensus 365 ~~~~~ 369 (390)
..+.+
T Consensus 425 L~~v~ 429 (438)
T COG2270 425 LLRVK 429 (438)
T ss_pred EEeec
Confidence 54444
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-21 Score=162.27 Aligned_cols=309 Identities=12% Similarity=0.066 Sum_probs=222.5
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcC------------------------------------------CCCCCc
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALC------------------------------------------PGQPTC 47 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~------------------------------------------~g~~~~ 47 (390)
.+..+....+++.+-.+.+.|.+|.|+.|.-. ....+.
T Consensus 22 ilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~ 101 (464)
T KOG3764|consen 22 ILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISL 101 (464)
T ss_pred EEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCc
Confidence 45567788888888899999999999877630 001233
Q ss_pred chhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHH
Q 016418 48 SEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIF 127 (390)
Q Consensus 48 ~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~ 127 (390)
+..+.++|++++...+.+++.+|+.|.+.||+|+|..+++|++....+++++++.++ ++.+++.|.+||+ +.+...
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---y~~l~vAR~LQgv-gsA~~~ 177 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---YPMLFVARSLQGV-GSAFAD 177 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---hHHHHHHHHHhhh-hHHHHH
Confidence 445677899999999999999999999999999999999999999999999999999 9999999999999 767777
Q ss_pred HHHHHHH----------------------------------------------HHHHHHHHHHHHHHHhcccCCCCCccc
Q 016418 128 CIAVAYA----------------------------------------------VSIALLIFVPVYMQFFLVETVESAPRK 161 (390)
Q Consensus 128 ~~~~~~i----------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~ 161 (390)
....+++ +.+++.++...+..+.++.++.++++.
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~ 257 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDST 257 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcccc
Confidence 7777776 566666666555555555433322111
Q ss_pred ccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q 016418 162 DQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIG 241 (390)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 241 (390)
+ +..++ ..++++|..+.........+.........++.+..|.+..+..+.|..+.-.++.
T Consensus 258 ~---------------~~~~~----~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~ 318 (464)
T KOG3764|consen 258 E---------------QGTPM----WSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLS 318 (464)
T ss_pred c---------------cCccH----HHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccc
Confidence 1 00122 4456788888887777777888888899999999888774444777765444433
Q ss_pred H---HHHHHHHHhhHH--HHH----HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCC---C--
Q 016418 242 S---IVSQILVLPLLN--PFV----ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGL---N-- 306 (390)
Q Consensus 242 ~---~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~---~-- 306 (390)
. .-..+.+.||++ |.. +++..+.......+.++...++ ..+..+++.+.............++. +
T Consensus 319 y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~ 398 (464)
T KOG3764|consen 319 YAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGF 398 (464)
T ss_pred hhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhcccc
Confidence 3 334578899998 433 5555555566666677665544 33444444444444443333333332 2
Q ss_pred -chhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 307 -NQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 307 -~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
..|.+.++......+|.++||.++|.+.+.. ++.|
T Consensus 399 ~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i-GF~w 434 (464)
T KOG3764|consen 399 NVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI-GFEW 434 (464)
T ss_pred ceeeeHHHHHHHHHHHhhhccccccchheeeh-hHHH
Confidence 4589999999999999999999999999987 7665
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=161.50 Aligned_cols=356 Identities=10% Similarity=0.045 Sum_probs=225.9
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCC--cchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHH
Q 016418 12 LHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPT--CSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITV 89 (390)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~ 89 (390)
.+.-.+.+.+......+..+.|.+-.... +.++ -+......+.+..+..+|.++++++.|+++||+|||+++...+
T Consensus 44 ~iAG~GfftDsYDlF~I~lVt~il~~lY~--~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~l 121 (538)
T KOG0252|consen 44 IIAGMGFFTDSYDLFSISLVTKILGYLYY--HGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKEL 121 (538)
T ss_pred HHhhhhhcccchhhhhHHHHHHHHHHHhc--CCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHH
Confidence 34445566666666666666665533332 2221 2344455588999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCc----hhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------
Q 016418 90 STTIVPFTLLAFNQSQ----EFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------- 134 (390)
Q Consensus 90 ~~~~i~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------- 134 (390)
++..++++++++.... ...+++.+.|++.|+ |-|.-+|.+.+..
T Consensus 122 iImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGi-GIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt 200 (538)
T KOG0252|consen 122 IIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGI-GIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVA 200 (538)
T ss_pred HHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhc-cccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHH
Confidence 9999999988876433 236889999999999 8888888887776
Q ss_pred ----------------------------HHHHHHHHHHHHHHHhcccCCCCCcccc-------------ccccccccccc
Q 016418 135 ----------------------------VSIALLIFVPVYMQFFLVETVESAPRKD-------------QESSGLKKAVN 173 (390)
Q Consensus 135 ----------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~-------------~~~~~~~~~~~ 173 (390)
..+.++.+..+...+.+||+++.+...+ .+...+.++..
T Consensus 201 ~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~ 280 (538)
T KOG0252|consen 201 LIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTA 280 (538)
T ss_pred HHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhcc
Confidence 3344444455555667788766541000 00000000000
Q ss_pred c-ccc-ccccHHHHHHhhh--cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHH----HHHHHH----HH
Q 016418 174 V-LDR-RYKSMRDAALMVV--SSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSE----ILMMVG----IG 241 (390)
Q Consensus 174 ~-~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~----~~~~~~----~~ 241 (390)
+ ... +.++.+.-.+... .-+.+......+|+.-.+++..+.+....+++. |+.+..... -.+..+ ..
T Consensus 281 ~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~i-g~~~~~~~~~~~~~vA~~~~iia~~ 359 (538)
T KOG0252|consen 281 ESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAI-GVIPSANTYHELFKVAEGNLIIAVC 359 (538)
T ss_pred ccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhh-ccCCCcchHHHHHHHHHHHHHHHHH
Confidence 0 000 1111111111222 235666777788888888888888888877754 766554333 111111 11
Q ss_pred HHH----HHHHHHhhHHHHH----HHHHHHHHHHhHhcccch-h---HHH--HHHHHHHHHhhhHHHHHHHHhhccCCCc
Q 016418 242 SIV----SQILVLPLLNPFV----ALLASIAYALFYGLAWAS-W---VPY--LSASFGVIYVLVKPSTYAIISKASGLNN 307 (390)
Q Consensus 242 ~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~---~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 307 (390)
+.+ .+..+.|+++|+. +++++.+..+.++...+. . ... ..+...++.-+.......+.+|.+|.+.
T Consensus 360 ~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv 439 (538)
T KOG0252|consen 360 STVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV 439 (538)
T ss_pred ccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH
Confidence 111 2246789999999 788888877777766552 1 111 1222233333344444557789999999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhccccccCC
Q 016418 308 QGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEENS 374 (390)
Q Consensus 308 ~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (390)
||+..|+....+..|+.+|....+++.++ ++ .+....+..+++.+.+..++.+..+..++.+++
T Consensus 440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~--~y-p~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~ 503 (538)
T KOG0252|consen 440 RSTCHGISAASGKAGAIVGAFGFLYLTDH--NY-PPNIGVRNVFIILAGCMLLGILFTLLIPETKGK 503 (538)
T ss_pred hhhhhhHHHHhccchHHHHHHHhhHhhhc--cC-CccccchHHHHHHHHHHHHhHheeEEeeccccc
Confidence 99999999999999999999999999884 21 111223346777888888888777776655443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-19 Score=162.62 Aligned_cols=314 Identities=15% Similarity=0.128 Sum_probs=186.8
Q ss_pred CCcccccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccc--
Q 016418 1 MASGFWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADE-- 78 (390)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-- 78 (390)
|++.+.+.++.....++.+...+........++.|+.+.+ +.+...+|.+.++..+..++..|+.|+++||
T Consensus 1 ~~~~~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~-------gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~ 73 (444)
T PRK09669 1 MNTSQLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVF-------GLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTR 73 (444)
T ss_pred CCCCcccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHcccceeeEeeecCC
Confidence 4444444444444445555555555556666777765543 4455778999999999999999999999998
Q ss_pred --cCC-chHHHHHHHHHHHHHHHHHhccCch---hhHHHHHHHHHHhhcccchHHHHHHHHH------------------
Q 016418 79 --YGR-KPLLLITVSTTIVPFTLLAFNQSQE---FVYAYYVLRTISYIISQGSIFCIAVAYA------------------ 134 (390)
Q Consensus 79 --~Gr-k~~l~~~~~~~~i~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------ 134 (390)
+|| |+.++.+.+..+++..+....++.+ ..+++++..++.+........ ...++.
T Consensus 74 ~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~i-p~~al~~~~t~~~~eR~~l~~~r~ 152 (444)
T PRK09669 74 TRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINV-PYCAMPGAITNDPRERHSLQSWRF 152 (444)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcc-hHHHhHHHhcCCHHHHHHHHHHHH
Confidence 777 5667778777777776655554311 123344444444431211111 111222
Q ss_pred -----------------------------------HHHHHHHHHHHHHHHhcccCCCCCccccccccccccccccccccc
Q 016418 135 -----------------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRY 179 (390)
Q Consensus 135 -----------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (390)
+.+++..+..+..++..+|.++++ .+++
T Consensus 153 ~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~-----------------~~~~ 215 (444)
T PRK09669 153 ALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPE-----------------VDNS 215 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCC-----------------CcCC
Confidence 011111111111112222221110 0011
Q ss_pred ccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHH---HHHHHHHHHHHHHHhhHHHH
Q 016418 180 KSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILM---MVGIGSIVSQILVLPLLNPF 256 (390)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~ 256 (390)
.+.++.++.++|||.++.+....++............++|.++..+ ++...+.+.. +.++.+....+++.||++||
T Consensus 216 ~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~ 294 (444)
T PRK09669 216 SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRV 294 (444)
T ss_pred CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 2456667888899999988888777767766656655555565544 2333333322 22334444557889999888
Q ss_pred H----HHHHHHH-HHHhHhc-ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccC-------CCchhhHHHHHHHHHHHH
Q 016418 257 V----ALLASIA-YALFYGL-AWASWVPY-LSASFGVIYVLVKPSTYAIISKASG-------LNNQGKAQGFIAGVQSIS 322 (390)
Q Consensus 257 ~----~~~~~~~-~~~~~~~-~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~~ 322 (390)
+ +.....+ ....... .++.+..+ ..++.+++.+...+..+++++|..| ++..|..+|..+....+|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg 374 (444)
T PRK09669 295 RAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLG 374 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHH
Confidence 8 3322222 2222222 23444443 5577899999999999999999876 233477889999999999
Q ss_pred HhhhhhhhhhhhcccccCC
Q 016418 323 SLLSPLAMSPLTSWFLSTD 341 (390)
Q Consensus 323 ~~~g~~~~g~l~~~~~~~~ 341 (390)
..+|+.+.|.+.+.. |++
T Consensus 375 ~alg~~i~g~ll~~~-Gy~ 392 (444)
T PRK09669 375 LAIGGAVVGWILAWV-DYV 392 (444)
T ss_pred HHHHHHHHHHHHHHc-CCC
Confidence 999999999999987 775
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-19 Score=157.22 Aligned_cols=270 Identities=15% Similarity=0.078 Sum_probs=173.4
Q ss_pred HHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhccccccc-----CCchH-HHHHHHHHHHHHHH
Q 016418 25 EAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEY-----GRKPL-LLITVSTTIVPFTL 98 (390)
Q Consensus 25 ~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----Grk~~-l~~~~~~~~i~~~~ 98 (390)
.++..+.+|.+.+|. |.+. .+.|+..+. .+...+ .+++|+++||+ ||||. ++.+.+..++....
T Consensus 4 ~~~~~~~~~~~~~~~---g~s~-----~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~ 73 (356)
T TIGR00901 4 LGLVGNTLPYWLRSK---NVSL-----KTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI 73 (356)
T ss_pred chhHHhHHHHHHHHc---CCCH-----HHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 456778889888665 5554 555777555 455554 89999999998 89886 56778888887777
Q ss_pred HHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------------------
Q 016418 99 LAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------------------- 134 (390)
Q Consensus 99 ~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------------------- 134 (390)
.++.++....+.+....++.+. ..+...+...+++
T Consensus 74 l~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~ 152 (356)
T TIGR00901 74 LSFLVPSTDLPLLAGLAFLIAF-FSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL 152 (356)
T ss_pred HHcCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 7777543336667777777776 3344455555555
Q ss_pred ---------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcc---hhHHHHHH
Q 016418 135 ---------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPT---LRGISFVS 202 (390)
Q Consensus 135 ---------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 202 (390)
+.++..++..+..++..||++++++++ + ++..+.++.++.++++|. ++...+..
T Consensus 153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (356)
T TIGR00901 153 ITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP-------K-------PLTQAVLKPIREFFQRKNMIQALLLLLLI 218 (356)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc-------h-------hHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 000011111111111234432111000 0 001123445566666765 66677777
Q ss_pred HHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHH----HHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcc--
Q 016418 203 FFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVG----IGSIVSQILVLPLLNPFV----ALLASIAYALFYGLA-- 272 (390)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-- 272 (390)
++..........+.|.|+++ +|+++.+.+.+....+ +.+.+..+++.||+++|+ +.++.++....+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~ 297 (356)
T TIGR00901 219 VLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLAS 297 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778888888999999988 7999999888775544 345566689999999877 333333333332221
Q ss_pred ---------cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHH
Q 016418 273 ---------WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQS 320 (390)
Q Consensus 273 ---------~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 320 (390)
++.+... ..++.+++.+...+...++.+|.+|+++||+.+|+.++..+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 298 NGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2234343 44667888899999999999999999999999999887654
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-18 Score=154.76 Aligned_cols=344 Identities=15% Similarity=0.084 Sum_probs=208.9
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhccccc----ccCCchH
Q 016418 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLAD----EYGRKPL 84 (390)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Grk~~ 84 (390)
+++..+....+-..++++...+.++.|.++. |.+. .+.+++..+..+...+.+|+.|+++| |+||||.
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~~l---g~~~-----~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp 75 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYVQEL---GIPH-----AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP 75 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCH-----HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH
Confidence 3455566666677788888999999887554 5433 66699999999999999999999999 5999998
Q ss_pred HHHH-HHHHHHHHHHHHhccCchh--------------hHHHHHHHHHHhhcccchHHHHHHHHH---------------
Q 016418 85 LLIT-VSTTIVPFTLLAFNQSQEF--------------VYAYYVLRTISYIISQGSIFCIAVAYA--------------- 134 (390)
Q Consensus 85 l~~~-~~~~~i~~~~~~~~~~~~~--------------~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------- 134 (390)
++.+ .+...++..+.+++++... .+..+++-.+..+ +.....+...+++
T Consensus 76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~-~~n~~~~p~rALiaDl~p~~~~~~~~a~ 154 (477)
T TIGR01301 76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDV-ANNMLQGPCRAFLADLTGGDARRTRIAN 154 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccCchhHHHHHHH
Confidence 7764 6666667677777655100 0111111111122 1122222223333
Q ss_pred -----------------------------------------------HHHHHHHHHHHHHHHhcccCCCCCccccccccc
Q 016418 135 -----------------------------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSG 167 (390)
Q Consensus 135 -----------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 167 (390)
+.+++.++..++..+..||.+..++++..+++.
T Consensus 155 ~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~ 234 (477)
T TIGR01301 155 AYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA 234 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc
Confidence 112223333344455667765422211100000
Q ss_pred ccccccccccccccHHHHHHhhhc-CcchhHHHHHHHHHHHHhhhHHHHHHHHHh-hhcCCCch-----hH----HH---
Q 016418 168 LKKAVNVLDRRYKSMRDAALMVVS-SPTLRGISFVSFFYKLGMSGISAVLLFYLK-AVFGFNKN-----QF----SE--- 233 (390)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~-----~~----g~--- 233 (390)
++.+ ..+....+++.++.+++ .|.++.+++..++.++++..+..+.+.|.. +.++-++. +- |.
T Consensus 235 ~~~~---~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l 311 (477)
T TIGR01301 235 APPS---KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGL 311 (477)
T ss_pred cccc---ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHH
Confidence 0000 01111234555555554 566888999999999999999999888875 55654332 11 11
Q ss_pred -HHHHHHHHHHHHHHHHHhhHHH-HH----HHHHHHHHHHhHhcccc---------------------hhHHH-HHHHHH
Q 016418 234 -ILMMVGIGSIVSQILVLPLLNP-FV----ALLASIAYALFYGLAWA---------------------SWVPY-LSASFG 285 (390)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~---------------------~~~~~-~~~~~g 285 (390)
+.++......+.--.+.+++++ |. +.++.++++....+.++ .+..+ .....|
T Consensus 312 ~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 391 (477)
T TIGR01301 312 MLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILG 391 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhh
Confidence 1222222222233456667763 34 54455555554443221 13333 557788
Q ss_pred HHHhhhHHHHHHHHhhccCC--CchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHH
Q 016418 286 VIYVLVKPSTYAIISKASGL--NNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLS 363 (390)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (390)
+..+..+..-++++++..|+ +.+|..+|+.|.+..+.+.+.....|.+.+.+ +.+... .+.+.++..+++.+
T Consensus 392 i~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~-g~~~~~-----~~~~~gv~~~~aa~ 465 (477)
T TIGR01301 392 IPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLF-GGGNLP-----AFVVGAVAAFVSGL 465 (477)
T ss_pred HHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHc-CCCCee-----HHHHHHHHHHHHHH
Confidence 99999999999999999985 45699999999999999999999999977776 433333 55777777777777
Q ss_pred hhhcccc
Q 016418 364 CACMLDT 370 (390)
Q Consensus 364 ~~~~~~~ 370 (390)
..++..+
T Consensus 466 ~~~~~~~ 472 (477)
T TIGR01301 466 LALILLP 472 (477)
T ss_pred HHHHhCC
Confidence 6665443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-18 Score=143.37 Aligned_cols=287 Identities=13% Similarity=0.069 Sum_probs=203.2
Q ss_pred HHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCc
Q 016418 26 AMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQ 105 (390)
Q Consensus 26 ~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~ 105 (390)
....|.++.+- ++.+.+....|++.++..+...+.+|+..+++.|+|.++.+..++++..++..+-... +
T Consensus 29 tsvgPLL~~Ir--------~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~- 98 (395)
T COG2807 29 TSVGPLLDEIR--------QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-G- 98 (395)
T ss_pred hhhhhhHHHHH--------HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-c-
Confidence 34556666554 4445566778999999999999999999999999999999999999999999988776 5
Q ss_pred hhhHHHHHHHHHHhhcccchHHHHHHHHH------------------------------------------HHHHHHHHH
Q 016418 106 EFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------------------VSIALLIFV 143 (390)
Q Consensus 106 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------------------~~~~~~~~~ 143 (390)
.+.++.+..+.|. +-+.......+.+ ..+......
T Consensus 99 --~~~L~~gt~l~G~-gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~a 175 (395)
T COG2807 99 --LPLLFLGTLLAGA-GIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLA 175 (395)
T ss_pred --HHHHHHHHHHHHh-hHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHH
Confidence 6888888888888 5455555555555 111222222
Q ss_pred HHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 016418 144 PVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAV 223 (390)
Q Consensus 144 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (390)
.+....++|...+++.... ..+..+. ..++|+|.-|.+.+...+..+.++....|+|.++.|+
T Consensus 176 llAl~~WlPq~~r~~~~~~-------------~~~~~~~----~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~ 238 (395)
T COG2807 176 LLALLIWLPQALREQAASI-------------ATKLVSV----RKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR 238 (395)
T ss_pred HHHHHHHhhhccccccccc-------------ccccccc----cccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 3333344555322111000 0000010 3367899999999999999999999999999999998
Q ss_pred cCCCchhHHHHHHHHHHHHHHH---HHHHHhhHHHHH-----HHHHHHHHHHhHhcccchhHHHHHHHHHHHHhhhHHHH
Q 016418 224 FGFNKNQFSEILMMVGIGSIVS---QILVLPLLNPFV-----ALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPST 295 (390)
Q Consensus 224 ~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 295 (390)
|+|+.+.|.+.+...+..... ...+.+|...++ ...+..+++..+.+.+........+++|++.+..+|..
T Consensus 239 -G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~la 317 (395)
T COG2807 239 -GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLA 317 (395)
T ss_pred -CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHH
Confidence 999999999887777666644 344455432222 33444444444444443322233588999999999999
Q ss_pred HHHHhhccC-CCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCC
Q 016418 296 YAIISKASG-LNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAP 343 (390)
Q Consensus 296 ~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~ 343 (390)
.+.+.+..+ +++.++-.|+.+.++++-...||.+.|.+.|..++++.+
T Consensus 318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~ 366 (395)
T COG2807 318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAP 366 (395)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHH
Confidence 988876654 456688889999999999999999999999998666553
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-18 Score=160.80 Aligned_cols=307 Identities=13% Similarity=0.100 Sum_probs=189.3
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhccccc----ccCC-chHHHH
Q 016418 13 HLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLAD----EYGR-KPLLLI 87 (390)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Gr-k~~l~~ 87 (390)
...++.+...+..++..+.++.|+.+.+ | .+...+|.+..+..+..++..|++|.++| |+|| |+.++.
T Consensus 10 ~yg~g~~~~~~~~~~~~~~l~~yyt~v~--G-----ls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~ 82 (473)
T PRK10429 10 SYGFGAFGKDFAIGIVYMYLMYYYTDVV--G-----LSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILI 82 (473)
T ss_pred hhccchhHHhHHHHHHHHHHHHHHHHhc--C-----CCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhh
Confidence 3445666677777888888888886654 4 34577799999999999999999999999 6698 677788
Q ss_pred HHHHHHHHHHHHHhccCch---hhHHHHHHHHHHhhcccchHHHHHHHHH------------------------------
Q 016418 88 TVSTTIVPFTLLAFNQSQE---FVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------ 134 (390)
Q Consensus 88 ~~~~~~i~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------ 134 (390)
+.+..+++..+....++.+ .+..+++...+.+++. ........++.
T Consensus 83 g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~-t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~ 161 (473)
T PRK10429 83 GTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTY-TIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAG 161 (473)
T ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHH-HHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888766665443211 1223333333333311 11111111111
Q ss_pred -----------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhc
Q 016418 135 -----------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVS 191 (390)
Q Consensus 135 -----------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (390)
+.+++..+..+..++..||.+++++. +.+.+++.++++.++.+++
T Consensus 162 ~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 229 (473)
T PRK10429 162 FTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQ------------VSAEGSHLTLKDIVALIYK 229 (473)
T ss_pred HHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccc------------ccccccCCCHHHHHHHHhc
Confidence 00111111111111222332111000 0001122467888888889
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHH---HHHHHHHHHHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMV---GIGSIVSQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~ 264 (390)
||.++.++...++..........+.+.|.++..+ ++...+.+.... .+.+.+..+.+.||++||+ +..+..+
T Consensus 230 n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 230 NDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVL 308 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 9999988888888888777777777766666544 455555554433 3344445578899999888 2222222
Q ss_pred HHHhHh-----cccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccC-------CCchhhHHHHHHHHHHHHHhhhhhhhh
Q 016418 265 YALFYG-----LAWASWVPY-LSASFGVIYVLVKPSTYAIISKASG-------LNNQGKAQGFIAGVQSISSLLSPLAMS 331 (390)
Q Consensus 265 ~~~~~~-----~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~~~~~g~~~~g 331 (390)
+.+.+. ...+.+..+ ..++.+++.+...+...++++|..| .+..|..+|.......++..+++.+.|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g 388 (473)
T PRK10429 309 SCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG 388 (473)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 122334333 4567788888888888899999866 334467999999999999999999999
Q ss_pred hhhcccccCC
Q 016418 332 PLTSWFLSTD 341 (390)
Q Consensus 332 ~l~~~~~~~~ 341 (390)
.+.+.. |++
T Consensus 389 ~~l~~~-Gy~ 397 (473)
T PRK10429 389 VVLGLI-GYV 397 (473)
T ss_pred HHHHHc-CCC
Confidence 999877 664
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-18 Score=156.29 Aligned_cols=317 Identities=9% Similarity=0.029 Sum_probs=193.5
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccc-cCCchH
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADE-YGRKPL 84 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grk~~ 84 (390)
+++|.++.++...+...+++....+.++.|+.+.+ |.++ ...+++.+.+.....+..++.|+++|| +||||+
T Consensus 11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~l--g~~~-----~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~ 83 (489)
T PRK10207 11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQL--GFSQ-----EQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT 83 (489)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCH-----HHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH
Confidence 45677888888999999999999999999987765 4443 444788888888888888999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhccCchhhHH-HHHHHHHHhhcccchHHHHHHHHH-----------------------------
Q 016418 85 LLITVSTTIVPFTLLAFNQSQEFVYA-YYVLRTISYIISQGSIFCIAVAYA----------------------------- 134 (390)
Q Consensus 85 l~~~~~~~~i~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~g~~~~~~~~~i----------------------------- 134 (390)
++.+.++..++.+.++++.+ ... +++.|.++|+ +.|...|...+++
T Consensus 84 ~~~g~~~~~~g~~~~~~~~~---~~~ll~~~~~l~~i-g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g 159 (489)
T PRK10207 84 IVLGAIVLAIGYFMTGMSLL---KPDLIFIALGTIAV-GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIS 159 (489)
T ss_pred HHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHH
Confidence 99999999999999998876 443 5588999998 6566666555555
Q ss_pred -----------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccc----------------ccccccccc
Q 016418 135 -----------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAV----------------NVLDRRYKS 181 (390)
Q Consensus 135 -----------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~ 181 (390)
....+..+..++.+...++..++.++++.++..+.... .........
T Consensus 160 ~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
T PRK10207 160 LSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVAN 239 (489)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 11111122222233333332211110100000000000 000000000
Q ss_pred --------------HHHHH--HhhhcCcchhHHHHH--HHHHHHHhhhHHHHHHHHHhhhcCCC-------chhHHHHHH
Q 016418 182 --------------MRDAA--LMVVSSPTLRGISFV--SFFYKLGMSGISAVLLFYLKAVFGFN-------KNQFSEILM 236 (390)
Q Consensus 182 --------------~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~g~~~~ 236 (390)
..+.. +...|+|.+....+. ..+.+..+......++.+.++..+.+ +.....+..
T Consensus 240 ~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~ 319 (489)
T PRK10207 240 LVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNP 319 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhH
Confidence 00000 122334443332222 34445555666677777877532321 111211222
Q ss_pred HHHHHHHHHHHHHHhhHHHHH-----------HHHHHHHHHHhH-----hcc-----cchhHHH-HHHHHHHHHhhhHHH
Q 016418 237 MVGIGSIVSQILVLPLLNPFV-----------ALLASIAYALFY-----GLA-----WASWVPY-LSASFGVIYVLVKPS 294 (390)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-----~~~-----~~~~~~~-~~~~~g~~~~~~~~~ 294 (390)
...+......+.+.||+++|. ++++.+++++.. ... .+.|... ..++.+++.+...|.
T Consensus 320 ~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~ 399 (489)
T PRK10207 320 FWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISAL 399 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHH
Confidence 222223333367888887772 555555555322 111 1234333 567889999999999
Q ss_pred HHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh
Q 016418 295 TYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPL 333 (390)
Q Consensus 295 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l 333 (390)
..+.+.+..|++.+|.++|+.+...++|+.+|..+.+..
T Consensus 400 g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 400 GLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999887777654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=156.58 Aligned_cols=274 Identities=17% Similarity=0.023 Sum_probs=186.4
Q ss_pred chhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHH
Q 016418 48 SEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIF 127 (390)
Q Consensus 48 ~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~ 127 (390)
+....+.|.+.+++.++++++.++.|.+.||++-.+.+....+.+++..++....+| ++.+++.|++.|++ ++..+
T Consensus 77 ~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s---~~~~ialr~llGl~-es~~w 152 (495)
T KOG2533|consen 77 KLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS---FPGLIALRFLLGLF-ESGGW 152 (495)
T ss_pred chhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHH-hcccc
Confidence 344455699999999999999999999999999888888888888888878878889 99999999999994 57777
Q ss_pred HHHHHHH---------------------------------------------------HHHHHHHHHHHHHHHhcccCCC
Q 016418 128 CIAVAYA---------------------------------------------------VSIALLIFVPVYMQFFLVETVE 156 (390)
Q Consensus 128 ~~~~~~i---------------------------------------------------~~~~~~~~~~~~~~~~~~e~~~ 156 (390)
|....++ +.+++.++..++..+++|+.|.
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 8888877 6677777777888888998877
Q ss_pred CCccccccccc--cccccccc-cc-ccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHH
Q 016418 157 SAPRKDQESSG--LKKAVNVL-DR-RYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFS 232 (390)
Q Consensus 157 ~~~~~~~~~~~--~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 232 (390)
+..-.++++.+ .++.++++ .. ..+.-+..+++.+++|.+|...+..++.....+++.+++|.|+++..|++..+..
T Consensus 233 ~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~ 312 (495)
T KOG2533|consen 233 KAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQAN 312 (495)
T ss_pred hccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhc
Confidence 43211111100 00000000 00 0001233456777899999999999999999999999999999986578777665
Q ss_pred HH---HHHHHHHHHHHHHHHHhhH----HHHH-----HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHH
Q 016418 233 EI---LMMVGIGSIVSQILVLPLL----NPFV-----ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAII 299 (390)
Q Consensus 233 ~~---~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~ 299 (390)
.+ ..+.++++.+..++++||+ .+|. ..+...++...+......+... .......+.....+......
T Consensus 313 ~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 392 (495)
T KOG2533|consen 313 LLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWT 392 (495)
T ss_pred cccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhc
Confidence 55 4566677777889999994 4444 2233333433333333333333 33444445556677777788
Q ss_pred hhccCCCchhh-HHHHHHHHHHHHHhh
Q 016418 300 SKASGLNNQGK-AQGFIAGVQSISSLL 325 (390)
Q Consensus 300 ~~~~~~~~~g~-~~g~~~~~~~~~~~~ 325 (390)
++....+.+.. ..+......+.++.+
T Consensus 393 s~~~~g~~k~~~~~~~~i~~~~s~~~~ 419 (495)
T KOG2533|consen 393 SANLAGNTKALTTVSAIIDGTGSAGAI 419 (495)
T ss_pred cccccchHHhHHHHhhhhcchhHHHHh
Confidence 77776554433 333333344444443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-17 Score=146.25 Aligned_cols=312 Identities=13% Similarity=0.075 Sum_probs=215.2
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccc----cCC-ch
Q 016418 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADE----YGR-KP 83 (390)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr----~Gr-k~ 83 (390)
+.......+.+...+..+.....+..|..|. .+.+...+|.+..+.-+-.++..|+.|.++|| +|| ||
T Consensus 12 ~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv-------~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP 84 (467)
T COG2211 12 KEKIGYGLGDFASNFAFGIVVLYLLFFYTDV-------FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRP 84 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHhcc-------cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccH
Confidence 3344455566666677777777777777544 35566888999999999999999999999995 776 67
Q ss_pred HHHHHHHHHHHHHHHHHhccCch---hhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------
Q 016418 84 LLLITVSTTIVPFTLLAFNQSQE---FVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------- 134 (390)
Q Consensus 84 ~l~~~~~~~~i~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------- 134 (390)
.++++.+..++...++..+++.+ .....++...+.+++-..... ...++.
T Consensus 85 ~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vni-Py~al~~~iT~d~~ER~~l~s~R~~~~~~g~~ 163 (467)
T COG2211 85 WLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNI-PYGALGPEITQDPQERASLTSWRMVFASLGGL 163 (467)
T ss_pred HHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeC-chhhcchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999988888877421 122233333344431100000 000111
Q ss_pred ---------------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHH
Q 016418 135 ---------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAAL 187 (390)
Q Consensus 135 ---------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (390)
+.+++..+..+.+++..+|+..+.++.+ ...+.++++.+.
T Consensus 164 l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~-------------~~~~~~~~~~~~ 230 (467)
T COG2211 164 LVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTK-------------TGVKLKLKDSFL 230 (467)
T ss_pred HHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCc-------------ccccccHHHHHH
Confidence 4445555555666666666654322111 112346677777
Q ss_pred hhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHH---HHHHHHHHHHHHHhhHHHHH----HHH
Q 016418 188 MVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMM---VGIGSIVSQILVLPLLNPFV----ALL 260 (390)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~ 260 (390)
.+++||+++..++..++...+.+...+...+|.+...|.+.......+.. ..+.+.+....+.+|++||+ +.+
T Consensus 231 ~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~ 310 (467)
T COG2211 231 LIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLL 310 (467)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHH
Confidence 88899999999999999999999999999999999888777665444332 22333455578888899888 666
Q ss_pred HHHHHHHhHhccc--chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCC-------CchhhHHHHHHHHHHHHHhhhhhhh
Q 016418 261 ASIAYALFYGLAW--ASWVPY-LSASFGVIYVLVKPSTYAIISKASGL-------NNQGKAQGFIAGVQSISSLLSPLAM 330 (390)
Q Consensus 261 ~~~~~~~~~~~~~--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~~~~~g~~~~ 330 (390)
+..++.+.+.+.+ +.+..+ ..++.+++.+...+..+++++|..+. +..|...|....+..+|.+++..+.
T Consensus 311 ~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~ 390 (467)
T COG2211 311 LLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP 390 (467)
T ss_pred HHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555554 334444 45788899999999999999987763 3448899999999999999999999
Q ss_pred hhhhcccccCCC
Q 016418 331 SPLTSWFLSTDA 342 (390)
Q Consensus 331 g~l~~~~~~~~~ 342 (390)
|++.+.. ||..
T Consensus 391 g~~L~~~-Gyv~ 401 (467)
T COG2211 391 GWILGAI-GYVP 401 (467)
T ss_pred HHHHHHc-CCCC
Confidence 9999988 6654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=152.09 Aligned_cols=300 Identities=18% Similarity=0.149 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhccccc----ccCCc-hHHHHHHHHHH
Q 016418 19 CVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLAD----EYGRK-PLLLITVSTTI 93 (390)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Grk-~~l~~~~~~~~ 93 (390)
+...+........++.|..+.+ +.++...|++..+..+..++..|+.|.++| |+||| +.++.+.+..+
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~-------gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~ 83 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVL-------GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLA 83 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHH
Confidence 3344444444445555554543 344477799999999999999999999999 79965 56778888888
Q ss_pred HHHHHHHhc-c-Cch---hhHHHHHHHHHHhhcccchHHHHHHHHH----------------------------------
Q 016418 94 VPFTLLAFN-Q-SQE---FVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------- 134 (390)
Q Consensus 94 i~~~~~~~~-~-~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------- 134 (390)
++..++... + +.. ...++.+..++..++. ........++.
T Consensus 84 ~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~-t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~ 162 (428)
T PF13347_consen 84 LSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAY-TFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI 162 (428)
T ss_pred HHHHHhhccccchhhhhhHHHHHHHHHHHHHHhh-hhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 888887766 4 111 1222334444334311 11111111221
Q ss_pred -------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcch
Q 016418 135 -------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTL 195 (390)
Q Consensus 135 -------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (390)
+.+++..+..++..+..||++++ .+..+++.+.++.++.+++||.+
T Consensus 163 l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~---------------~~~~~~~~~~~~~~~~~~~nr~~ 227 (428)
T PF13347_consen 163 LVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVE---------------VTEQEKKISLRDSLRSLFRNRPF 227 (428)
T ss_pred hhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccc---------------ccccccccccccchhhhcccchH
Confidence 22222222222333333331000 01112223567777889999999
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHH---HHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHh
Q 016418 196 RGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEIL---MMVGIGSIVSQILVLPLLNPFV----ALLASIAYALF 268 (390)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 268 (390)
+.+....++............++|.++..|.+ ...+.+. .+.++......+++.||++||+ +....+++.+.
T Consensus 228 ~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~ 306 (428)
T PF13347_consen 228 RILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLL 306 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHH
Confidence 99999999999999988999999999888766 3334433 3444555556688999999988 55555555555
Q ss_pred Hhccc--chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCC-------CchhhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 016418 269 YGLAW--ASWVPY-LSASFGVIYVLVKPSTYAIISKASGL-------NNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFL 338 (390)
Q Consensus 269 ~~~~~--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~ 338 (390)
..+.+ +.+..+ ...+.|++.+.......++.+|..+. ++.|..+|..+....++..+++.+.|.+.+..
T Consensus 307 ~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~- 385 (428)
T PF13347_consen 307 LFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV- 385 (428)
T ss_pred HHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-
Confidence 55543 555554 66888999999989999999988873 44599999999999999999999999999876
Q ss_pred cCCCC
Q 016418 339 STDAP 343 (390)
Q Consensus 339 ~~~~~ 343 (390)
|++..
T Consensus 386 Gy~~~ 390 (428)
T PF13347_consen 386 GYDAN 390 (428)
T ss_pred CcCCC
Confidence 66543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-23 Score=188.95 Aligned_cols=316 Identities=17% Similarity=0.184 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcCCCCCC----cchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHH
Q 016418 16 LPLCVHWVAEAMTVSVLVDVVTNALCPGQPT----CSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVST 91 (390)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~ 91 (390)
++.+..+...+...+..+.......+ +.++ .+.+..+.+++.+...++..+++++.|.++||+|||+.++.+.++
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 7 LGGFLFGYDLGLIGSFASLLGFLQFF-GWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHhhHHhhhhhhhcc-ccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 44467777777665555543311110 1111 111345679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc---CchhhHHHHHHHHHHhhcccchHHHHHHHHH----------------------------------
Q 016418 92 TIVPFTLLAFNQ---SQEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------- 134 (390)
Q Consensus 92 ~~i~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------- 134 (390)
..++.++.++++ + ++.+.++|++.|+ +.|...+....++
T Consensus 86 ~~i~~~~~~~~~~~~~---~~~~~~~R~~~G~-~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNN---FWMLLIGRFLIGF-GIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred cccccccccccccccc---ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 8 9999999999999 6676666777776
Q ss_pred -------------HHHHHHHHHHHHHHHhcccCCCCCccccccccc-----c----------cccccccccccccHHHHH
Q 016418 135 -------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSG-----L----------KKAVNVLDRRYKSMRDAA 186 (390)
Q Consensus 135 -------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~ 186 (390)
..+.+..+...+...++||+|++-..++++++. + .++..++.++.++.+..+
T Consensus 162 ~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (451)
T PF00083_consen 162 SYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASW 241 (451)
T ss_pred ccccccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceee
Confidence 111222222344556789998763222111100 0 000000000000000123
Q ss_pred HhhhcCcc----hhHHHHHHHHHHHH-hhhHHHHHHHHHhhhcCCCch-hHHHHHHHHHHHHHHHHHHHHhhHHHHH---
Q 016418 187 LMVVSSPT----LRGISFVSFFYKLG-MSGISAVLLFYLKAVFGFNKN-QFSEILMMVGIGSIVSQILVLPLLNPFV--- 257 (390)
Q Consensus 187 ~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~--- 257 (390)
+.+++++. +...........+. ......+.+...+ ..+.+.. ..........+.+.+.+.++.||++||.
T Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i 320 (451)
T PF00083_consen 242 RDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFE-NAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLI 320 (451)
T ss_pred eecccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 34444432 22222222222222 2233333344443 3466655 3334444555555566678999999997
Q ss_pred -HHHHHHHHHHhHh-----cccc----hhHH-HHHHHHHHHHh-hhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhh
Q 016418 258 -ALLASIAYALFYG-----LAWA----SWVP-YLSASFGVIYV-LVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLL 325 (390)
Q Consensus 258 -~~~~~~~~~~~~~-----~~~~----~~~~-~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 325 (390)
+....+++.+.+. ..++ .... ....+...+.+ ...+..+.+..|.+|.+.|+++.|+.....+++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i 400 (451)
T PF00083_consen 321 IGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFI 400 (451)
T ss_pred cccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 3333333333332 1111 1111 12222222323 345677788899999999999999999999999999
Q ss_pred hhhhhhhhhccc
Q 016418 326 SPLAMSPLTSWF 337 (390)
Q Consensus 326 g~~~~g~l~~~~ 337 (390)
+|.+...+.+..
T Consensus 401 ~~~~~~~~~~~~ 412 (451)
T PF00083_consen 401 IPFLFPYLFNNL 412 (451)
T ss_pred cccccccccccc
Confidence 999988888765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-16 Score=139.45 Aligned_cols=304 Identities=14% Similarity=0.108 Sum_probs=191.8
Q ss_pred HH-HHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHH
Q 016418 52 YI-SGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIA 130 (390)
Q Consensus 52 ~~-~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~ 130 (390)
.+ .|.+.++++.+++++.++.|.++||+|.|+++..+.+.+++..++.+++++ ++.+.+.|++.|+ +.|... ..
T Consensus 61 ~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S---l~~L~i~R~llGv-aEA~~~-A~ 135 (511)
T TIGR00806 61 ETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS---VWHMQLMEVFYSV-TMAARI-AY 135 (511)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHH-HH
Confidence 44 699999999999999999999999999999999999999999999999999 9999999999999 667776 66
Q ss_pred HHHH----------------------------------------------HHHHHHHHHHHHHHHhcccCCCC---Cccc
Q 016418 131 VAYA----------------------------------------------VSIALLIFVPVYMQFFLVETVES---APRK 161 (390)
Q Consensus 131 ~~~i----------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~---~~~~ 161 (390)
..++ ..........++..+++|..++. ++++
T Consensus 136 ~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~ 215 (511)
T TIGR00806 136 SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLE 215 (511)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhcccc
Confidence 6666 22333333444555667744331 0010
Q ss_pred --------cccccccccc-ccc--cc-cc---cccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCC
Q 016418 162 --------DQESSGLKKA-VNV--LD-RR---YKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGF 226 (390)
Q Consensus 162 --------~~~~~~~~~~-~~~--~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 226 (390)
+.++..+.+. ..+ ++ +. ...+...++...+||.++.-.+-..+...++..+.++.....++..+-
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~ 295 (511)
T TIGR00806 216 DVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDES 295 (511)
T ss_pred ccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCC
Confidence 0000000000 000 00 00 112233345556788888888888777777777777777666554221
Q ss_pred CchhHHHHHHH---HHHHHHHHHHHHHhhHHHHH------HHHHHHHHHHhHhcccchhHHHH-HHHHHHHHhhhHHHHH
Q 016418 227 NKNQFSEILMM---VGIGSIVSQILVLPLLNPFV------ALLASIAYALFYGLAWASWVPYL-SASFGVIYVLVKPSTY 296 (390)
Q Consensus 227 ~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~ 296 (390)
.+...|.+-++ .+....+..|++-.+..+.. ..++.+..++++...++.|..+. -+++...+....+...
T Consensus 296 ~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~ 375 (511)
T TIGR00806 296 LNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIAT 375 (511)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11133444333 33333444455544443322 33334445667778888888874 4777888888888888
Q ss_pred HHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc-c--cCCCCCCCCchHHHHHHHHHHHHHH
Q 016418 297 AIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF-L--STDAPFNCKGFSIIVASICLMVSLS 363 (390)
Q Consensus 297 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (390)
.-+++....+.-|..+|+++.+.-+-+.+-.. .+.|.. . +...-|...+..|.+.+.+.++...
T Consensus 376 ~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~---iVvd~~gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~ 442 (511)
T TIGR00806 376 FQIASSLSKELCALVFGINTFVATALKTIITA---VVSDKRGLGLQVRKQFRIYSVYFLVLSIICFFGAG 442 (511)
T ss_pred HHHHHHhcccceEEEEecHHHHHHHHHHheEE---EEEcccccCCCceeEEEehhhHHHHHHHHHHHHHH
Confidence 88888888788899999998887766654332 333331 0 1122233334455666655555544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=139.43 Aligned_cols=301 Identities=15% Similarity=0.085 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcccccc-cCCchHHHHHHHHHHHHHHHHHh---ccCchhhHHHHHHHHHHhhcccchHH
Q 016418 52 YISGLQQTVVGVFKMVVLPLLGQLADE-YGRKPLLLITVSTTIVPFTLLAF---NQSQEFVYAYYVLRTISYIISQGSIF 127 (390)
Q Consensus 52 ~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grk~~l~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~g~~~ 127 (390)
....++.+.+.....+...+.|++.|| +|-|..-++-+....++.++.+. .+. +|.+..+|++.|+ |+-...
T Consensus 79 akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~a---Fw~M~~GRF~FGI-GgESlA 154 (459)
T KOG4686|consen 79 AKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHA---FWTMLAGRFLFGI-GGESLA 154 (459)
T ss_pred eeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHH---HHHHHhhheeecc-Cchhhh
Confidence 344788899999999999999999996 68777766666666777766654 455 9999999999999 422222
Q ss_pred HHHHHHH------------------------------------------------HHHHHHHHHH------HHHHHhccc
Q 016418 128 CIAVAYA------------------------------------------------VSIALLIFVP------VYMQFFLVE 153 (390)
Q Consensus 128 ~~~~~~i------------------------------------------------~~~~~~~~~~------~~~~~~~~e 153 (390)
...+.|. ..++...+.. +.....+--
T Consensus 155 VaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~ 234 (459)
T KOG4686|consen 155 VAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGL 234 (459)
T ss_pred hhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2334444 1111000000 000000000
Q ss_pred CCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHH
Q 016418 154 TVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSE 233 (390)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 233 (390)
..++.+ +..+.++....+..+....++ -.|.+|.+.+..++...+..-+.+.-|.++++++|+|+.+.+.
T Consensus 235 ~D~rAe-rilh~e~g~~Ge~pkLtdv~~---------f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~ 304 (459)
T KOG4686|consen 235 SDDRAE-RILHLEEGFLGEEPKLTDVNT---------FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGN 304 (459)
T ss_pred hhhHHH-HHHhhhcCcccCCcccccccc---------cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccc
Confidence 000000 000000000000000111111 1688999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHH---HHHHHHhhHHHHH-----HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccC
Q 016418 234 ILMMVGIGSIV---SQILVLPLLNPFV-----ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASG 304 (390)
Q Consensus 234 ~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~ 304 (390)
+.+..-.++.+ ..+.++|+.|++. +.+....+-..+.++ .|..+ ...+.|.......-..+..++..+|
T Consensus 305 i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vp 382 (459)
T KOG4686|consen 305 ILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVP 382 (459)
T ss_pred hhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCC
Confidence 76655444443 4488999999987 222222222222222 23333 4567788888777778888999999
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhcccccc
Q 016418 305 LNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEE 372 (390)
Q Consensus 305 ~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
+++.|+++|..+..+++|-++.|++.|.+.|.-+++.+ ....|+..+.+.+....+.+...+++
T Consensus 383 E~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~----le~ffl~~~~~aL~svgil~~~N~kq 446 (459)
T KOG4686|consen 383 EEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN----LEAFFLIIGLMALTSVGILFYLNKKQ 446 (459)
T ss_pred HHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh----HHHHHHHHHHHHHHHHHHHhheeccc
Confidence 99999999999999999999999999999997644433 23344555555555555555554443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-17 Score=135.26 Aligned_cols=307 Identities=11% Similarity=0.024 Sum_probs=189.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHH
Q 016418 49 EAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFC 128 (390)
Q Consensus 49 ~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~ 128 (390)
.+..+..++......+..+++..||..+|++|||+.+....+...+...+.+.++| +..+.+.|.+.|+ +-|. .|
T Consensus 110 ~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn---f~~L~~f~~l~~~-g~gg-~p 184 (528)
T KOG0253|consen 110 PSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN---FASLCVFRALWGF-GVGG-LP 184 (528)
T ss_pred hhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC---eehhhHHHHHHhc-cCCC-cc
Confidence 45566689999999999999999999999999999999999999999999999999 9999999999998 5455 34
Q ss_pred HHHHHH-------------------------------------------HHHHHHHHHHHHHHHhcccCCCCCccccccc
Q 016418 129 IAVAYA-------------------------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQES 165 (390)
Q Consensus 129 ~~~~~i-------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 165 (390)
...++- +....++..+....+++||+++..-.+.+++
T Consensus 185 v~~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~ 264 (528)
T KOG0253|consen 185 VDSAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDY 264 (528)
T ss_pred HhHHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChH
Confidence 433322 2222444445556677899987421110000
Q ss_pred -------------------------ccc--cccc--------cccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhh
Q 016418 166 -------------------------SGL--KKAV--------NVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMS 210 (390)
Q Consensus 166 -------------------------~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (390)
.++ ++++ ++.++...+..+.+..-++ |.-..++...|...+.++
T Consensus 265 kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lr-kttlllw~iwfgnafsyy 343 (528)
T KOG0253|consen 265 KALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLR-KTTLLLWRIWFGNAFSYY 343 (528)
T ss_pred HHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHH-HHHHHHHHHHHhhHHHHH
Confidence 000 0000 0001111222222221121 112223333343444444
Q ss_pred hHHHHHHHHHhhh--cCC------------------Cch--hHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHH
Q 016418 211 GISAVLLFYLKAV--FGF------------------NKN--QFSEILMMVGIGSIVSQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 211 ~~~~~~~~~~~~~--~g~------------------~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 264 (390)
+..-......+.. .+. +.. .-.+..+...+.+.++.+++.||+|||+ ++++.++
T Consensus 344 g~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~i 423 (528)
T KOG0253|consen 344 GSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGI 423 (528)
T ss_pred HHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3332222222211 010 000 1233456677888888899999999999 4455555
Q ss_pred HHHhHhcccchh-HHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCC
Q 016418 265 YALFYGLAWASW-VPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAP 343 (390)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~ 343 (390)
..++.....+.. .....+..-++..+.+.+.+.+..|.+|...|+++.|..+.+.++|+++.|.+. ...+. +...
T Consensus 424 flfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~--s~sl- 499 (528)
T KOG0253|consen 424 FLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAEL--STSL- 499 (528)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhcc--ceee-
Confidence 555444444332 223556666777777788899999999999999999999999999999999998 33332 2222
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhccccc
Q 016418 344 FNCKGFSIIVASICLMVSLSCACMLDTE 371 (390)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
+..+.+.+++++.+...+++-+
T Consensus 500 ------~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 500 ------PIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred ------hHHHHHHHHHHHHHHheeeeec
Confidence 3355666666666666555433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-16 Score=143.56 Aligned_cols=314 Identities=14% Similarity=0.104 Sum_probs=182.7
Q ss_pred CCcccccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccc--
Q 016418 1 MASGFWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADE-- 78 (390)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-- 78 (390)
|++++.+.++......+.+...+...+....+..|..+.+ | .+...+|.+..+.-+-.++..|+.|.++||
T Consensus 1 ~~~~~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~--G-----l~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~ 73 (460)
T PRK11462 1 MKSEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIF--G-----IPAGFVGTMFLVARALDAISDPCMGLLADRTR 73 (460)
T ss_pred CCCCcccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhh--C-----CCHHHHHHHHHHHHHHHHHHhhhheehhccCC
Confidence 5555444444455556666666666777777777765554 4 445778999999999999999999999995
Q ss_pred --cCCc-hHHHHHHHHHHHHHHHHHhccCch---hhHHHHHHHHHHhhcccchHHHHHHHHH------------------
Q 016418 79 --YGRK-PLLLITVSTTIVPFTLLAFNQSQE---FVYAYYVLRTISYIISQGSIFCIAVAYA------------------ 134 (390)
Q Consensus 79 --~Grk-~~l~~~~~~~~i~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------ 134 (390)
+||| +.++++.+..+++..++...++.+ ....+++...+..++- ........++.
T Consensus 74 ~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~-t~~~ipy~al~~~lt~d~~eRt~l~s~r~ 152 (460)
T PRK11462 74 SRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLY-TVVNIPYCALGGVITNDPTQRISLQSWRF 152 (460)
T ss_pred CCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH-HHHhccHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6874 667778788888877666555311 1222333333333211 11111111111
Q ss_pred -----------------------------------HHHHHHHHHHHHHHHhcccCCCCCccccccccccccccccccccc
Q 016418 135 -----------------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRY 179 (390)
Q Consensus 135 -----------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (390)
+.+++..+...+.....||.++. .+++
T Consensus 153 ~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~------------------~~~~ 214 (460)
T PRK11462 153 VLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA------------------PPTT 214 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC------------------CccC
Confidence 01111111111111112221110 0111
Q ss_pred ccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHH---HHHHHHHHHHHHHHhhHHHH
Q 016418 180 KSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILM---MVGIGSIVSQILVLPLLNPF 256 (390)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~ 256 (390)
.+.++.++..++||.++.+....++.............+|.+..+|. +...+.+.. +.++.+....+.+.||++||
T Consensus 215 ~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk 293 (460)
T PRK11462 215 TSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV 293 (460)
T ss_pred CCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 24677778888999988887777777777666667777777766553 333333333 33344445668889998888
Q ss_pred H----HHHHHHH-HHHhHhcccc-hhHH-HHHHHHHHHHhhhHHHHHHHHhhccC-------CCchhhHHHHHHHHHHHH
Q 016418 257 V----ALLASIA-YALFYGLAWA-SWVP-YLSASFGVIYVLVKPSTYAIISKASG-------LNNQGKAQGFIAGVQSIS 322 (390)
Q Consensus 257 ~----~~~~~~~-~~~~~~~~~~-~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~~ 322 (390)
. +.....+ ..+......+ .+.. ...++.+++.+...+..+++..|..+ .+..|..++.......+|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg 373 (460)
T PRK11462 294 TIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLG 373 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHH
Confidence 7 1121222 2222222222 2222 23455677766667777778887766 334466678878899999
Q ss_pred HhhhhhhhhhhhcccccCCC
Q 016418 323 SLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 323 ~~~g~~~~g~l~~~~~~~~~ 342 (390)
..+++.+.|.+.+.. |+..
T Consensus 374 ~alg~~i~g~iL~~~-Gy~~ 392 (460)
T PRK11462 374 LAFGGALIGWMLAYG-GYDA 392 (460)
T ss_pred HHHHHHHHHHHHHHc-CCCC
Confidence 999999999999876 6643
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-16 Score=149.18 Aligned_cols=280 Identities=18% Similarity=0.155 Sum_probs=180.3
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHH
Q 016418 50 AIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCI 129 (390)
Q Consensus 50 ~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~ 129 (390)
+.....+..+++.+|.++++.++|+++||+|||++++.+.++..++.+..++++| ++.+++.|++.|++. +.....
T Consensus 116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~---~~~~~~~Rfl~G~~~-~~~~~~ 191 (521)
T KOG0255|consen 116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN---YWMFLIFRFLSGFFG-SGPLTV 191 (521)
T ss_pred cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhhc-cchhHH
Confidence 3456688899999999999999999999999999999999999999999999999 999999999999955 444445
Q ss_pred HHHHH------------------------------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccc-
Q 016418 130 AVAYA------------------------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESS- 166 (390)
Q Consensus 130 ~~~~i------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~- 166 (390)
...++ +..+...+. ++.++..||++++...+.+.++
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~-~~~~~l~~Es~rwl~~~g~~~~a 270 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLF-LLLWFLPPESPRWLLSKGRIDEA 270 (521)
T ss_pred hHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHccCcChHHHHHcCchHHH
Confidence 55544 222222222 2335666699876432221110
Q ss_pred c---cccc-----ccccc---------cccc----cHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcC
Q 016418 167 G---LKKA-----VNVLD---------RRYK----SMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFG 225 (390)
Q Consensus 167 ~---~~~~-----~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 225 (390)
. ++.. ..++. +... ..+..+..+++.|+++...+...+..+.......-++..... +|
T Consensus 271 ~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~-lg 349 (521)
T KOG0255|consen 271 IKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSG-LG 349 (521)
T ss_pred HHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhh-cC
Confidence 0 0000 00000 0000 000113445556655555555555554444444444444433 35
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchh---HHH-HHHHHHHHHhhhHHHHHH
Q 016418 226 FNKNQFSEILMMVGIGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASW---VPY-LSASFGVIYVLVKPSTYA 297 (390)
Q Consensus 226 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~-~~~~~g~~~~~~~~~~~~ 297 (390)
.+......+....-.......+...|+.+||. +.....++++...+..... ... ...+...+.+..+.....
T Consensus 350 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (521)
T KOG0255|consen 350 GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFL 429 (521)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544333334444444455578889998888 5555666666666554322 222 445555566666677788
Q ss_pred HHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 298 IISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 298 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+..|..|+..|+.+.+..+....++.+++|.+.-....
T Consensus 430 ~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 430 YSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999888755543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-15 Score=141.74 Aligned_cols=116 Identities=10% Similarity=0.086 Sum_probs=86.7
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccc-cCCchHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADE-YGRKPLLL 86 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grk~~l~ 86 (390)
++.++.++...+...++.....+.++.|+.+.+ |.++ ...+++.+.+........+++|+++|| +|||+.+.
T Consensus 20 p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l--g~s~-----~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~ 92 (500)
T PRK09584 20 PKAFYLIFSIELWERFGYYGLQGIMAVYLVKQL--GMSE-----ADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM 92 (500)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 456788888889999998888889999986665 5443 334666666665556666789999999 59999999
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHH
Q 016418 87 ITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAY 133 (390)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~ 133 (390)
.+.++..++..+++++++. .+.+++.|.++|+ +.|...+...++
T Consensus 93 ~g~~~~~ig~~l~~~~~~~--~~~l~~~~~l~gi-g~g~~~~~~~~l 136 (500)
T PRK09584 93 LGAIVLAIGYALVAWSGHD--AGIVYMGMATIAV-GNGLFKANPSSL 136 (500)
T ss_pred HHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHH-hhhcccCCHHHH
Confidence 9999999999888887431 5667788888888 545444443333
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-17 Score=151.06 Aligned_cols=280 Identities=17% Similarity=0.140 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHH
Q 016418 52 YISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAV 131 (390)
Q Consensus 52 ~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~ 131 (390)
.+.+++.+...++..+++++.|+++|++|||+.++.+.+...++.++.++++| +++++++|++.|+ +.|.......
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~---~~~l~~GR~l~G~-g~G~~~~~~p 164 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS---WYQLIVGRILTGL-GVGGASVLAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhcc-chhhhhhcch
Confidence 34589999999999999999999999999999999999999999999999999 9999999999999 6666665555
Q ss_pred HHH---------------------------------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccc
Q 016418 132 AYA---------------------------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESS 166 (390)
Q Consensus 132 ~~i---------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 166 (390)
.|+ ..+.++.+...+..+++||+|++..++.+.++
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~ 244 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEE 244 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHH
Confidence 555 11122223333346778998876332111100
Q ss_pred -------------ccccccccccc------c-cccHHHHHHhhhc----CcchhHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 016418 167 -------------GLKKAVNVLDR------R-YKSMRDAALMVVS----SPTLRGISFVSFFYKLGMSGISAVLLFYLKA 222 (390)
Q Consensus 167 -------------~~~~~~~~~~~------~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (390)
++.+.+.+..+ . ....+..++.+++ ++......+..+....+......+.+.+++.
T Consensus 245 a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~ 324 (513)
T KOG0254|consen 245 AKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS 324 (513)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh
Confidence 00000000000 0 0000001122222 1122223333333344445555666666665
Q ss_pred hcCCCc--hhHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcc----c--------chhHHH--HHH
Q 016418 223 VFGFNK--NQFSEILMMVGIGSIVSQILVLPLLNPFV----ALLASIAYALFYGLA----W--------ASWVPY--LSA 282 (390)
Q Consensus 223 ~~g~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~--------~~~~~~--~~~ 282 (390)
. |.+. ...........+.+.+...++.||++||. +.....++.++++.. . ..+..+ ..+
T Consensus 325 ~-g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (513)
T KOG0254|consen 325 A-GLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCL 403 (513)
T ss_pred c-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHH
Confidence 5 5553 34455556666666677789999999999 333333333333221 1 112222 222
Q ss_pred HHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 283 SFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 283 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
..........|..+.+.+|.+|.+.|+++.++....+.....+-....-...+.
T Consensus 404 ~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~ 457 (513)
T KOG0254|consen 404 FIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA 457 (513)
T ss_pred HHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333445666777889999999999999999999988877654444444443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-16 Score=140.99 Aligned_cols=325 Identities=26% Similarity=0.401 Sum_probs=213.5
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcch-hHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHH
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSE-AIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLIT 88 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~ 88 (390)
....+....++..+++++..+..........|....+.+. .....+.-.....+...+.++..|.++||+|||..+...
T Consensus 19 ~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~ 98 (463)
T KOG2816|consen 19 SMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLP 98 (463)
T ss_pred hhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHH
Confidence 3456667788888888887766665554444322222221 112223333333688899999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHHHHHHHhhccc-chHHHHHHHHH---------------------------------
Q 016418 89 VSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQ-GSIFCIAVAYA--------------------------------- 134 (390)
Q Consensus 89 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~-g~~~~~~~~~i--------------------------------- 134 (390)
.+...+..+...+.. +|.+ + +.+++++ +.......+++
T Consensus 99 ~~~~~l~~~~~~~~~----~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~ 170 (463)
T KOG2816|consen 99 LFGTILPALCLLFQG----YWFF-L---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGY 170 (463)
T ss_pred HHHHHHhHHHHHHHH----HHHh-h---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 988888877776654 2222 2 4444221 11222333333
Q ss_pred ------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHH
Q 016418 135 ------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVS 202 (390)
Q Consensus 135 ------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (390)
+..+..++..+...+.+||+.++++++..+..+.+......... .+..+..+...++|..+.+.+..
T Consensus 171 ~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~l~l~l~~ 249 (463)
T KOG2816|consen 171 LVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHV-ADAFQSLTKVGPDRLLLLLLLVA 249 (463)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhh-hhhhhhhcccCCCccchHHHHHH
Confidence 56666667777788889998776554421111111111100100 11111122233455556655555
Q ss_pred HHHHHHhhhHHH-HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHH----HHHhhHHHHH----HHHHHHHHHHhHhccc
Q 016418 203 FFYKLGMSGISA-VLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQI----LVLPLLNPFV----ALLASIAYALFYGLAW 273 (390)
Q Consensus 203 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~ 273 (390)
++.......-.. ..+.|++..++|++.+.+.+.+..++...+.+. .+...++.++ ++..-.+....+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~ 329 (463)
T KOG2816|consen 250 FLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT 329 (463)
T ss_pred HHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc
Confidence 555444333222 557788999999999999888777766665443 4444455554 7777888889999999
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCC
Q 016418 274 ASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAP 343 (390)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~ 343 (390)
+.|+.+.............|...+..+...+++++|+++++...+..+...++|.+.+.++..+......
T Consensus 330 ~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~~~~~ 399 (463)
T KOG2816|consen 330 ETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLDDLPG 399 (463)
T ss_pred cchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhccc
Confidence 9999998888888889999999999999999999999999999999999999999999998776444333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-15 Score=140.24 Aligned_cols=310 Identities=11% Similarity=0.005 Sum_probs=174.4
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccC-----CchHHH
Q 016418 12 LHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYG-----RKPLLL 86 (390)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G-----rk~~l~ 86 (390)
..+....+..++. ++....++.++++.+ |.+. .+.+...+...++..+- +++|.++||++ ||+.++
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~l--g~s~-----~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G~rRr~~l~ 99 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDL--GLDG-----ARYQRLVGLSSLGWALK-PFAGVMSDTFPLFGYTKRWYLV 99 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHHhc--CCCH-----HHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCccchHHHH
Confidence 3444455666666 666666666766544 5444 55678888899998885 55999999997 777778
Q ss_pred HHHHHHH-HHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------
Q 016418 87 ITVSTTI-VPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------- 134 (390)
Q Consensus 87 ~~~~~~~-i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------- 134 (390)
++.++.. +.....+..++. .....+..++.++ +.+.......++.
T Consensus 100 ~~~~l~~~~~~~~l~~~~~~--~~~~~~~~~l~~~-~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~ 176 (468)
T TIGR00788 100 LSGLLGSAILYGLLPGKVSS--AKVAAAFIFLAAL-AKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSL 176 (468)
T ss_pred HHHHHHHHHHHHhcccccch--HHHHHHHHHHHHH-HHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHH
Confidence 7776663 443333333441 2233335666666 3233333333333
Q ss_pred ----------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccc--cccccccc-cccccHHHHHHhhhcCcch
Q 016418 135 ----------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGL--KKAVNVLD-RRYKSMRDAALMVVSSPTL 195 (390)
Q Consensus 135 ----------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 195 (390)
+.+.+.++. .....++||++.....+..++... ........ ..++..++.++ .+++|.+
T Consensus 177 l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~i 254 (468)
T TIGR00788 177 LGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRG-AIQLLEI 254 (468)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHH-HHhcHHH
Confidence 222222222 233456677531111110000000 00000000 01112233333 3567887
Q ss_pred hHHHHHHHH-HHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhH----HHHH----HHHHHHHHH
Q 016418 196 RGISFVSFF-YKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLL----NPFV----ALLASIAYA 266 (390)
Q Consensus 196 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~ 266 (390)
+...+..++ ............ .+.++..|+++.+.|.+....++..++. ..+.+|+ +.|. +.++.+++.
T Consensus 255 ~~~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g-~~~~~~~~~~~~~r~~l~~~~~l~~~~~ 332 (468)
T TIGR00788 255 AKPLIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCG-VGGYDRFLKTFPYRLLFGVTTLLYTLSS 332 (468)
T ss_pred HHHHHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHH-HHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 776665555 222222211111 1334567999999999988777655544 3334443 3333 223333322
Q ss_pred HhHhcc----------cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 267 LFYGLA----------WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 267 ~~~~~~----------~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+..... ++.+... ..++.+++.+........++++..|++++|+.+++.+++.++|..+++.++|.+.+
T Consensus 333 ~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 333 LFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred hCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221110 2222222 45677888888888889999999999999999999999999999999999999999
Q ss_pred cc
Q 016418 336 WF 337 (390)
Q Consensus 336 ~~ 337 (390)
+.
T Consensus 413 ~~ 414 (468)
T TIGR00788 413 TI 414 (468)
T ss_pred Hc
Confidence 87
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=152.33 Aligned_cols=230 Identities=12% Similarity=0.129 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHH
Q 016418 17 PLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPF 96 (390)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~ 96 (390)
..+...+..+...+.++.+.+++ +.++ .+.|++.+.+.++++++.++.|+++||+|||+++.++.++.+++.
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F---~lss-----~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ 112 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRF---KLST-----SSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS 112 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhh---CCCC-----CcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence 34444444566777777665444 4444 455999999999999999999999999999999999999999999
Q ss_pred HHHHhcc----------------------------C--------------------chhhHHHHHHHHHHhhcccchHHH
Q 016418 97 TLLAFNQ----------------------------S--------------------QEFVYAYYVLRTISYIISQGSIFC 128 (390)
Q Consensus 97 ~~~~~~~----------------------------~--------------------~~~~~~l~~~r~l~G~~~~g~~~~ 128 (390)
+++++.+ + ...+..++++|+++|+ +.+...+
T Consensus 113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~Gi-G~~~~~~ 191 (633)
T TIGR00805 113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGI-GATPIFP 191 (633)
T ss_pred HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhc-cCCcchh
Confidence 9887753 0 0025677899999999 6677777
Q ss_pred HHHHHH-----------------------------HH--------------------------------------HHHHH
Q 016418 129 IAVAYA-----------------------------VS--------------------------------------IALLI 141 (390)
Q Consensus 129 ~~~~~i-----------------------------~~--------------------------------------~~~~~ 141 (390)
...+++ +. +++.+
T Consensus 192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~ 271 (633)
T TIGR00805 192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL 271 (633)
T ss_pred cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 777777 00 00111
Q ss_pred HHHHHHHHhcccCCCCCcc-ccc--ccccc--cccccc---cccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHH
Q 016418 142 FVPVYMQFFLVETVESAPR-KDQ--ESSGL--KKAVNV---LDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGIS 213 (390)
Q Consensus 142 ~~~~~~~~~~~e~~~~~~~-~~~--~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (390)
+. .+.++.+|++.+++.+ .+. ++.+. +.+.++ ......+..+.++.+++||.++...+..++.......+.
T Consensus 272 l~-~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~ 350 (633)
T TIGR00805 272 LT-SIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYI 350 (633)
T ss_pred HH-HHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 11 1223445654332211 100 00000 000000 001112334456778899999999999999999999999
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHH----HHHHHHHHHHHhhHHHH
Q 016418 214 AVLLFYLKAVFGFNKNQFSEILMMVG----IGSIVSQILVLPLLNPF 256 (390)
Q Consensus 214 ~~~~~~~~~~~g~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~ 256 (390)
.++|.|+++.+|+++.+.+++..... +.+.+.++++.||++.+
T Consensus 351 ~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 351 TFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 99999999999999999988876544 34455668888988743
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-13 Score=126.76 Aligned_cols=95 Identities=15% Similarity=0.042 Sum_probs=80.0
Q ss_pred CCcccccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhccccccc-
Q 016418 1 MASGFWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEY- 79 (390)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~- 79 (390)
|+++.++++.++.++...+...++.......+|.|+.+.+ |.+ ....+.+.+.+.....++.+++|+++||+
T Consensus 1 ~~~~~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~l--gls-----~~~a~~i~~~~~~~~~l~~ligG~LaDRil 73 (493)
T PRK15462 1 MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQL--KYD-----DNHAYELFSAYCSLVYVTPILGGFLADKVL 73 (493)
T ss_pred CCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6667777888888888899999998888899999986654 443 35558889999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHhc
Q 016418 80 GRKPLLLITVSTTIVPFTLLAFN 102 (390)
Q Consensus 80 Grk~~l~~~~~~~~i~~~~~~~~ 102 (390)
||||++.++.++..++.++.+..
T Consensus 74 Grrr~iliG~il~~lg~lll~~~ 96 (493)
T PRK15462 74 GNRMAVMLGALLMAIGHVVLGAS 96 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988776654
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-13 Score=128.26 Aligned_cols=292 Identities=13% Similarity=0.098 Sum_probs=180.1
Q ss_pred HHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchh
Q 016418 28 TVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEF 107 (390)
Q Consensus 28 ~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~ 107 (390)
....++.+..|. |.++ +. .|+.+...++..+..|+.|+++|.+|||.+++.+.++..++.++++-++|
T Consensus 63 ~a~~l~~I~~di---G~~~-~~-----~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~--- 130 (599)
T PF06609_consen 63 PASILPYINADI---GGSD-NW-----SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQN--- 130 (599)
T ss_pred cHHHHHHHHHhc---CCCc-cc-----hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCc---
Confidence 345566555444 5443 22 78888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccchHHHHHHHHH---------------------------------------------HHHHHHHH
Q 016418 108 VYAYYVLRTISYIISQGSIFCIAVAYA---------------------------------------------VSIALLIF 142 (390)
Q Consensus 108 ~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------------------------------~~~~~~~~ 142 (390)
...++.+..+.|+ +.|... .....+ +..++..+
T Consensus 131 ~~~~iag~~l~Gv-gaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i 208 (599)
T PF06609_consen 131 MNTFIAGMVLYGV-GAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGI 208 (599)
T ss_pred HHHHHHHHHHHHH-hhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHH
Confidence 9999999999999 545443 222222 23333333
Q ss_pred HHHHH-HHhcccCCCCCcccc---ccccc--c----------------------c-ccccccc-----------------
Q 016418 143 VPVYM-QFFLVETVESAPRKD---QESSG--L----------------------K-KAVNVLD----------------- 176 (390)
Q Consensus 143 ~~~~~-~~~~~e~~~~~~~~~---~~~~~--~----------------------~-~~~~~~~----------------- 176 (390)
.++.. +++.|.+.++.+.++ .++-. | . ....+..
T Consensus 209 ~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~ 288 (599)
T PF06609_consen 209 ALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFV 288 (599)
T ss_pred HHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHH
Confidence 33322 233343221111111 01000 0 0 0000000
Q ss_pred ------cccccHHHHHHhhhcC-cchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCch---hHHHHHHHHHH---HHH
Q 016418 177 ------RRYKSMRDAALMVVSS-PTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKN---QFSEILMMVGI---GSI 243 (390)
Q Consensus 177 ------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~g~~~~~~~~---~~~ 243 (390)
..++++.. ..++|+ |.+...++..++....+.....++|......++-++. ..++.....++ .+.
T Consensus 289 ~wE~~~~~~~Pl~P--~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~ 366 (599)
T PF06609_consen 289 VWEWFGAPKDPLFP--HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGA 366 (599)
T ss_pred HhhhhccCCCCcCC--HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHH
Confidence 00011111 335555 4565556677777777778888888888777766553 33444333332 233
Q ss_pred HHHHHHHhhHHHHH-----HHHHHHHHHHhHhc--ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHH
Q 016418 244 VSQILVLPLLNPFV-----ALLASIAYALFYGL--AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFI 315 (390)
Q Consensus 244 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 315 (390)
+..+.+..+++|.+ +.+...+++..++. .++....+ ..++.+++.+..........+-..|+++.|++.|+.
T Consensus 367 ~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~ 446 (599)
T PF06609_consen 367 VILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLT 446 (599)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHH
Confidence 33356666665544 33333322222322 22333333 567788888888777788888889999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhc
Q 016418 316 AGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 316 ~~~~~~~~~~g~~~~g~l~~ 335 (390)
.+.+.+|+.+|..+...++.
T Consensus 447 ~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 447 GSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 99999999999888877664
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-15 Score=133.88 Aligned_cols=321 Identities=16% Similarity=0.189 Sum_probs=210.4
Q ss_pred cccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCC-ch
Q 016418 5 FWELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGR-KP 83 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr-k~ 83 (390)
+.+||.+++..+.+++..+..+++.+..-.|+++. +++.+. ...|++.++..++.++++|..|+++.|.++ |+
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l-D~~A~~-----~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~ 103 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL-DPTATA-----TFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKK 103 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhc-CCCCCc-----chhhHHHHHHHHHHHhcchhhcccccccCCccc
Confidence 45678899999999999999999988888888652 223222 455999999999999999999999999996 88
Q ss_pred HHHHHHHHHHHHHHHH-HhccCch-hhHHHHHHHHHHhhcccchHHHHHHHHH---------------------------
Q 016418 84 LLLITVSTTIVPFTLL-AFNQSQE-FVYAYYVLRTISYIISQGSIFCIAVAYA--------------------------- 134 (390)
Q Consensus 84 ~l~~~~~~~~i~~~~~-~~~~~~~-~~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------------------- 134 (390)
.++.+.++..++.+++ .+..-.. ..|.++++|++.|+ |.+.. ....+|+
T Consensus 104 Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gv-g~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilG 181 (488)
T KOG2325|consen 104 PLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGV-GVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILG 181 (488)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCc-CcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHh
Confidence 8889999999999888 3322111 37899999999999 64443 5666776
Q ss_pred -------------------------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHH
Q 016418 135 -------------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMR 183 (390)
Q Consensus 135 -------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (390)
+.+++.++..+...++++|..+...+++.++.++++.+.+..+ ..++
T Consensus 182 p~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 259 (488)
T KOG2325|consen 182 PTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSDIEKVK-KPKL- 259 (488)
T ss_pred HHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccchhhhc-cCCh-
Confidence 6677777777778888888776654433222211111111010 0010
Q ss_pred HHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhH----HHHHHHHHHHHHHHH-HHHHhhHH---H
Q 016418 184 DAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQF----SEILMMVGIGSIVSQ-ILVLPLLN---P 255 (390)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----g~~~~~~~~~~~~~~-~~~~~~~~---~ 255 (390)
..+..+.+.+..+...+......+..+.+....++|+..+. |...++.++...... .+..-+++ +
T Consensus 260 -------d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~ 332 (488)
T KOG2325|consen 260 -------DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDK 332 (488)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 01223344455555556666667777778888888877754 344455555544322 22222222 2
Q ss_pred HH----HHHHHHHHHHhHhc----cc---------------------------chhHHH--HHHHHHHHHhhhHHHHHHH
Q 016418 256 FV----ALLASIAYALFYGL----AW---------------------------ASWVPY--LSASFGVIYVLVKPSTYAI 298 (390)
Q Consensus 256 ~~----~~~~~~~~~~~~~~----~~---------------------------~~~~~~--~~~~~g~~~~~~~~~~~~~ 298 (390)
|. +.+.......+... .. +.+.++ ..+++|.+.........++
T Consensus 333 r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tl 412 (488)
T KOG2325|consen 333 RRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTL 412 (488)
T ss_pred ceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHH
Confidence 32 32222222221111 00 011112 2245566666677788889
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCC
Q 016418 299 ISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAP 343 (390)
Q Consensus 299 ~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~ 343 (390)
.+|...|+++++.+|+++.....+..++|.+...++... ++++.
T Consensus 413 ySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~-g~~~v 456 (488)
T KOG2325|consen 413 YSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS-GPRPV 456 (488)
T ss_pred HHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc-CccHH
Confidence 999999999999999999999999999999999999887 66653
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-13 Score=125.90 Aligned_cols=179 Identities=8% Similarity=-0.057 Sum_probs=112.2
Q ss_pred HHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchh-----HHHHHHHHHHHHHHHHHHHHhhHHHHH--
Q 016418 185 AALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQ-----FSEILMMVGIGSIVSQILVLPLLNPFV-- 257 (390)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~-- 257 (390)
.+.+.+++..+|.++...++.........+.+.+..+..-|.+... .-.+.++.+..+=+..+++..+..||.
T Consensus 345 t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~ 424 (591)
T PTZ00207 345 TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAE 424 (591)
T ss_pred hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccc
Confidence 5566677889999999999988777777777777766553442222 122234444444455566653333322
Q ss_pred -----------HHHHHHHHHHhHhcccc-hhHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhh
Q 016418 258 -----------ALLASIAYALFYGLAWA-SWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLL 325 (390)
Q Consensus 258 -----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 325 (390)
..+ +.++.+++....+ ....+..++.|++.|..++.....++|++. ++-|+-+-+.....-+|..+
T Consensus 425 ~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~ 502 (591)
T PTZ00207 425 DRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIF 502 (591)
T ss_pred cccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHH
Confidence 222 3344444444433 333446788999999999999999999999 99999888888777777776
Q ss_pred h-hhhhhhhhcccccCCCCCC-----CCchHHHHHHHHHHHHHHhh
Q 016418 326 S-PLAMSPLTSWFLSTDAPFN-----CKGFSIIVASICLMVSLSCA 365 (390)
Q Consensus 326 g-~~~~g~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 365 (390)
- -.+.|.+||+-...+.... .....|++.+.+...+.+..
T Consensus 503 ~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s 548 (591)
T PTZ00207 503 LNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITS 548 (591)
T ss_pred HHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHH
Confidence 5 5678888886421111111 11235666666666555543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-12 Score=112.66 Aligned_cols=191 Identities=17% Similarity=0.140 Sum_probs=141.3
Q ss_pred ccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH---HHHHHH-HHhhH
Q 016418 178 RYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGS---IVSQIL-VLPLL 253 (390)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~---~~~~~~-~~~~~ 253 (390)
+..++++.++++..+|+.+++....++..+++..-+..+-+|--+.+|+++.+..-+....+.+. ....++ +.++.
T Consensus 193 ~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~ 272 (403)
T PF03209_consen 193 PRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRL 272 (403)
T ss_pred CCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33578888899999999999999999999999999999999999999999998777765555433 333333 34456
Q ss_pred HHHH----HHHHHHHHHHhH---hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhh
Q 016418 254 NPFV----ALLASIAYALFY---GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLL 325 (390)
Q Consensus 254 ~~~~----~~~~~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 325 (390)
++++ +.....+++... +...+.|.+- ..+++|++.|.......+...+..++++.|..+|.....+.++..+
T Consensus 273 ~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Gl 352 (403)
T PF03209_consen 273 GKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGL 352 (403)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHH
Confidence 6555 444444444433 3344566665 6689999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccccCC--CCCCCCchHHHHHHHHHHHHHHhhhcc
Q 016418 326 SPLAMSPLTSWFLSTD--APFNCKGFSIIVASICLMVSLSCACML 368 (390)
Q Consensus 326 g~~~~g~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
+..++|.+.|...... .+..-.+.+|.+=+++++.+..+....
T Consensus 353 g~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~l 397 (403)
T PF03209_consen 353 GTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGRL 397 (403)
T ss_pred HHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998642111 122233346666666666666555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-11 Score=106.57 Aligned_cols=279 Identities=13% Similarity=0.125 Sum_probs=173.4
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHH
Q 016418 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLIT 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~ 88 (390)
+.+....++.|+...+.++..+....|+.+. +.. +......++..+.+.++..++..+.+.+..+.........+
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~---~~~--~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~ 82 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSIL---GPI--ETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA 82 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH---CCc--chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 4566778888999999999988888888665 322 33456679999999999999999999888664221000000
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHHHHH-HHHHHHHHHHHHhcccCCCCCccccccccc
Q 016418 89 VSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYAVSI-ALLIFVPVYMQFFLVETVESAPRKDQESSG 167 (390)
Q Consensus 89 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 167 (390)
..- .+ .. .....|...+ +..++..++....+||.+++++++.
T Consensus 83 ~~~-----------~~---~~------------------~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~----- 125 (310)
T TIGR01272 83 TAN-----------AE---AA------------------KVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARV----- 125 (310)
T ss_pred hhh-----------HH---HH------------------HHHHHHHHHHHHHHHHHHHHHHccCCCCCccccccc-----
Confidence 000 00 00 0001111111 1112222222333454322111100
Q ss_pred ccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhh--cCCCchhHHHHHHHHHHHHH--
Q 016418 168 LKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAV--FGFNKNQFSEILMMVGIGSI-- 243 (390)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~~-- 243 (390)
++ ++ .. +. +..+++|.++...+..++..........|.+.|+++. +|+++.+.+...+......+
T Consensus 126 ~~--~~-~~----~~----~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iG 194 (310)
T TIGR01272 126 SS--GD-TT----QK----TSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVG 194 (310)
T ss_pred cc--cc-cc----ch----hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 00 00 00 2234577778777777877778899999999999754 68898888877655544333
Q ss_pred -HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHH
Q 016418 244 -VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGV 318 (390)
Q Consensus 244 -~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 318 (390)
+.++.+.||+++++ +..+..++.++....++.+..+...+.|++.+..+|...+...+..| ++.+++.++. ..
T Consensus 195 r~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~ 272 (310)
T TIGR01272 195 RFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CL 272 (310)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HH
Confidence 45578888888776 33333344433333344444445567899999999999999999888 4567777775 56
Q ss_pred HHHHHhhhhhhhhhhhcccccCCCC
Q 016418 319 QSISSLLSPLAMSPLTSWFLSTDAP 343 (390)
Q Consensus 319 ~~~~~~~g~~~~g~l~~~~~~~~~~ 343 (390)
..+|+.++|.+.|.+.|.. +.+.+
T Consensus 273 ~~~Gg~i~P~l~G~lad~~-g~~~a 296 (310)
T TIGR01272 273 AIVGGAIVPLLQGSLADCL-GIQLA 296 (310)
T ss_pred HHhcchHHHHHHHHHHHhc-cchHH
Confidence 7899999999999999976 55543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-13 Score=121.50 Aligned_cols=151 Identities=11% Similarity=0.072 Sum_probs=120.7
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~ 264 (390)
+|.++.+.+..++...+.....+++|.|+++.+|+++.+.|+..+...+... ...|.++||++||+ +.+...+
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~ 85 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFAS 85 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 4556778888888889999999999999998889999999998876655444 45589999999988 5555566
Q ss_pred HHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCC
Q 016418 265 YALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAP 343 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~ 343 (390)
+.+.+.+.++.+..+ ...+.+.+.+...+...++..|..|+++|+++.|+.+...++|..+||.+++.+.+ . +++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~ 163 (395)
T PRK10054 86 GFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLP 163 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcH
Confidence 666777777766555 33455666666778888999999999999999999999999999999999999875 3 55553
Q ss_pred C
Q 016418 344 F 344 (390)
Q Consensus 344 ~ 344 (390)
+
T Consensus 164 f 164 (395)
T PRK10054 164 F 164 (395)
T ss_pred H
Confidence 3
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.6e-13 Score=118.38 Aligned_cols=155 Identities=17% Similarity=0.253 Sum_probs=117.5
Q ss_pred hhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHH---HHHHHHHHHHHhhHHHHH----HHH
Q 016418 188 MVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVG---IGSIVSQILVLPLLNPFV----ALL 260 (390)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~ 260 (390)
.++.++....+.+...+.......+.+++--++++. +..+...|......- +..-+..+.+.+++|+-+ ++.
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~-~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa 444 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDL-GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLA 444 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhh
Confidence 456678877777777777777777888886677766 545554453322221 222234455666666655 788
Q ss_pred HHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHH-HHHHhhhhhhhhhhhcccc
Q 016418 261 ASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQ-SISSLLSPLAMSPLTSWFL 338 (390)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~~~~~g~~~~g~l~~~~~ 338 (390)
+..+-++.+....|+|..+ .-++-|+..+..+.+..++++...||+.+.+++|+..... .+|-.+|.+++|.+.+.+
T Consensus 445 ~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f- 523 (618)
T KOG3762|consen 445 CNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF- 523 (618)
T ss_pred HHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-
Confidence 8888899999999999988 6699999999999999999999999999999999987654 789999999999999987
Q ss_pred cCCCCC
Q 016418 339 STDAPF 344 (390)
Q Consensus 339 ~~~~~~ 344 (390)
+....|
T Consensus 524 g~~ttf 529 (618)
T KOG3762|consen 524 GARTTF 529 (618)
T ss_pred hhHHHH
Confidence 544433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-12 Score=114.62 Aligned_cols=158 Identities=21% Similarity=0.256 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhc
Q 016418 199 SFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGL 271 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 271 (390)
.+..++...........+|.++.+.+|.++.+.+++.+...+... +..+.+.||++||+ +.+..+++.+...+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 455666777777778888867777789999999998776655444 45589999999998 55555555334334
Q ss_pred ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchH
Q 016418 272 AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFS 350 (390)
Q Consensus 272 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~ 350 (390)
+++.+..+ ..++.|++.+...+...+++.|..|+++|+++.|+.+....+|..++|.+++.+.+.. +++. .
T Consensus 82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~-------~ 153 (352)
T PF07690_consen 82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-GWRW-------A 153 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-HHCC-------H
T ss_pred hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-cccc-------c
Confidence 45656444 6688899999999999999999999999999999999999999999999999999766 5555 3
Q ss_pred HHHHHHHHHHHHHh
Q 016418 351 IIVASICLMVSLSC 364 (390)
Q Consensus 351 ~~~~~~~~~~~~~~ 364 (390)
+.+.+++.++..++
T Consensus 154 ~~~~~~~~~~~~il 167 (352)
T PF07690_consen 154 FLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhh
Confidence 45566666655543
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-11 Score=106.04 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=96.9
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhccccccc-CCchHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEY-GRKPLL 85 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grk~~l 85 (390)
+.|.++.++...+...+++.-....+..|+..++ ++. .+.+...+.-+.+.|..-.-....++|+++||+ |+|+.+
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~--~~g-Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI 95 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQL--GDG-LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc--ccc-CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 4678999999999999999877777777887776 322 444445556666666666667788999999996 999999
Q ss_pred HHHHHHHHHHHHHHHhcc--CchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 86 LITVSTTIVPFTLLAFNQ--SQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 86 ~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
..+.++..++.++.+... + ...++++-.+.++ |.|..-+...+++
T Consensus 96 ~lGail~~iGh~~L~~~~~~~---~~gl~i~L~~I~i-G~Gl~K~NiS~ll 142 (498)
T COG3104 96 VLGAILMAIGHLVLAISSVSG---PGGLYIGLALIIV-GTGLFKPNISSLL 142 (498)
T ss_pred HHHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHh-ccccccccHHHHH
Confidence 999999999999999884 5 6778888888887 7788877777777
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-12 Score=115.99 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHh
Q 016418 196 RGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALF 268 (390)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~ 268 (390)
+.+....++...+.....++++.|+++.+|+++.+.|+..+...+... +..+.+.||++||+ +.....++.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~ 92 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 456677888888888899999999988889999999999877665554 45589999999988 66666667777
Q ss_pred HhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 269 YGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 269 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
+...++.|.++ ..++.|++.+...|...+++.+..|+++|+++.|+.+...++|..+||.++|.+.+ . +++.
T Consensus 93 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~-~-g~~~ 165 (400)
T PRK11646 93 MAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ-Y-DFRL 165 (400)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hHHH
Confidence 77777776665 55777888888888899999999999999999999999999999999999999984 3 5544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-12 Score=118.33 Aligned_cols=150 Identities=13% Similarity=0.113 Sum_probs=120.9
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhh--cCCCchhHHHHHHHHHHHHH---HHHHHHHhh-HHHHH----HHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAV--FGFNKNQFSEILMMVGIGSI---VSQILVLPL-LNPFV----ALLA 261 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~-~~~~~----~~~~ 261 (390)
.+.++.+....++..++++....++|.|+++. +|++..+.+.+.+...+... +.+|+++|| ++||+ +.+.
T Consensus 9 p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~ 88 (475)
T TIGR00924 9 PKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIV 88 (475)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHH
Confidence 34556667777777899999999999999887 89999999988766655444 456899999 89998 6666
Q ss_pred HHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCc---hhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 262 SIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNN---QGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
.+++.+++...++.+... ...+.+++.+...|...+++.+.+|+++ |+++.++.+...++|..+||.++|.+.+..
T Consensus 89 ~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~ 168 (475)
T TIGR00924 89 LMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY 168 (475)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777776655554 4567788888888999999999998754 888999999999999999999999999866
Q ss_pred ccCCC
Q 016418 338 LSTDA 342 (390)
Q Consensus 338 ~~~~~ 342 (390)
+++.
T Consensus 169 -g~~~ 172 (475)
T TIGR00924 169 -GYHV 172 (475)
T ss_pred -ChHH
Confidence 5554
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.1e-12 Score=115.51 Aligned_cols=156 Identities=12% Similarity=0.006 Sum_probs=119.3
Q ss_pred HHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----H
Q 016418 186 ALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----A 258 (390)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~ 258 (390)
++.++++|.++......++..+.........|.+.++. +.++.+.|++.+...+... +..+.+.||++||+ +
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~ 88 (417)
T PRK10489 10 LSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMM-TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLA 88 (417)
T ss_pred HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEeh
Confidence 35566788888888888888888888888888888775 6788888988876666554 35588999999998 4
Q ss_pred HHHHHHHHHhHh-----cccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhh
Q 016418 259 LLASIAYALFYG-----LAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSP 332 (390)
Q Consensus 259 ~~~~~~~~~~~~-----~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~ 332 (390)
....+++..... ..++.+..+ ..++.|++.+...+...+.+.+..|+++|+++.++.+...++|..+||.++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~ 168 (417)
T PRK10489 89 RGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGL 168 (417)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 444443333222 233444444 55677888888888889999999999999999999999999999999999999
Q ss_pred hhcccccCCCC
Q 016418 333 LTSWFLSTDAP 343 (390)
Q Consensus 333 l~~~~~~~~~~ 343 (390)
+.+.. ++++.
T Consensus 169 l~~~~-~~~~~ 178 (417)
T PRK10489 169 LIAAG-GVAWN 178 (417)
T ss_pred HHHHH-hhHHH
Confidence 98865 55543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.9e-12 Score=112.90 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHh
Q 016418 196 RGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALF 268 (390)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~ 268 (390)
+.+....++..++.......+|.|..+. +.++.+.+++.+...+... +..+.+.||++||+ +.....++...
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 2 RLLFAAQLISLIGTAITQVALPLYVLAG-TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 3456677777788888888889888875 8899999988776665554 35589999999999 33333344444
Q ss_pred Hhccc-----chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 269 YGLAW-----ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 269 ~~~~~-----~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
....+ +.+.++ ..++.|++.+...+...+++.|..|+++|+++.|+.+....+|..+||.+++.+.+.. +++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~ 159 (365)
T TIGR00900 81 LPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKW 159 (365)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHH
Confidence 44443 556555 5577899999999999999999999999999999999999999999999999998876 5544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-10 Score=102.02 Aligned_cols=272 Identities=11% Similarity=0.065 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCc---hhhH--HHHHHHHHHhhcccchHH
Q 016418 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQ---EFVY--AYYVLRTISYIISQGSIF 127 (390)
Q Consensus 53 ~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~---~~~~--~l~~~r~l~G~~~~g~~~ 127 (390)
+.-|..-+|.+.+.....++-|+.||+|-|...+++..+.+++..+-..+... +.++ ....+..+.+. +.-...
T Consensus 80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~-Aq~Fim 158 (480)
T KOG2563|consen 80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA-AQPFIL 158 (480)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH-hhhHhh
Confidence 34677788999999999999999999999999999999999998876665432 1133 44455555444 222211
Q ss_pred HH--HHHHH---------------------------------------------------HHHHHHHHHHHHHHHhcccC
Q 016418 128 CI--AVAYA---------------------------------------------------VSIALLIFVPVYMQFFLVET 154 (390)
Q Consensus 128 ~~--~~~~i---------------------------------------------------~~~~~~~~~~~~~~~~~~e~ 154 (390)
.. -.+-. ...++..+.+.+..+..++.
T Consensus 159 ~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~ 238 (480)
T KOG2563|consen 159 GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKK 238 (480)
T ss_pred ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11 11111 12222233333333334443
Q ss_pred CCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCch---hH
Q 016418 155 VESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKN---QF 231 (390)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~ 231 (390)
|+..+........ ..++.+..+..++|+++..+.+++......++...+.+-.-+... |.+.. ..
T Consensus 239 P~tPps~s~~~~~-----------~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~s-gY~~~~aG~i 306 (480)
T KOG2563|consen 239 PPTPPSASQAALQ-----------DASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPS-GYEGVFAGYI 306 (480)
T ss_pred CCCCCchhHhhhh-----------cCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccc-cCCccccchh
Confidence 3332221100000 125777788899999999988888887777777776666444443 44433 44
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHH-HHhHhccc----chhHHHHHHHHHHHHhhhHHHHHHHHhh
Q 016418 232 SEILMMVGIGSIVSQILVLPLLNPFV-----ALLASIAY-ALFYGLAW----ASWVPYLSASFGVIYVLVKPSTYAIISK 301 (390)
Q Consensus 232 g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 301 (390)
+.+..+.|..+.+..+.+.||.++.+ ......++ +.+..... +.+......++|.+.....|...-+..|
T Consensus 307 g~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE 386 (480)
T KOG2563|consen 307 GALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVE 386 (480)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeee
Confidence 55556667777777799999987776 11222222 11111111 2223335678888888889988888888
Q ss_pred ccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 302 ASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 302 ~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
..-|..-++..|+.+...++-+.+-..+.+...+..
T Consensus 387 ~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~ 422 (480)
T KOG2563|consen 387 TTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDL 422 (480)
T ss_pred eccccCCcccceeEEeehhHHHHHHHHHHHHHhhcc
Confidence 877788889999999999988888888888888765
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-11 Score=106.26 Aligned_cols=170 Identities=15% Similarity=0.090 Sum_probs=142.4
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHH---HHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQ---ILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~ 264 (390)
...++.+.++.|............+|...+|. |.+....|.+.+..+....+.+ ..+.+|++||+ .+.+..+
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl-~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADL-GVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 34566778888888888888899999988875 9999999999888877666543 67789999999 6677778
Q ss_pred HHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCC
Q 016418 265 YALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAP 343 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~ 343 (390)
+-++.+++++++.+. .-++.++..+..++...+...+.+|+++|+++.++......++..+|.+++.++-|.+ |++.+
T Consensus 91 ~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-GWR~~ 169 (394)
T COG2814 91 SNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GWRAT 169 (394)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-hHHHH
Confidence 888999999998887 6699999999999999999999999999999999999999999999999999999988 77774
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhcccc
Q 016418 344 FNCKGFSIIVASICLMVSLSCACMLDT 370 (390)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (390)
| .+.+.+.+++....+...+
T Consensus 170 F-------~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 170 F-------LAIAVLALLALLLLWKLLP 189 (394)
T ss_pred H-------HHHHHHHHHHHHHHHHhCC
Confidence 4 5566666666655544433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-11 Score=111.35 Aligned_cols=167 Identities=12% Similarity=0.127 Sum_probs=119.9
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHH---HHHHHHHHHhhH-HHHH----HHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIG---SIVSQILVLPLL-NPFV----ALLASI 263 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~---~~~~~~~~~~~~-~~~~----~~~~~~ 263 (390)
.+.++......+...+.+++...++|.|+++.+|+++.+.+.+....... ..+.+|+++||+ |||+ +.+...
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~ 87 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMA 87 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 45566777777788888999999999999988899999888776555443 335669999998 9988 555555
Q ss_pred HHHHhHhccc-chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCC--chhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 016418 264 AYALFYGLAW-ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLN--NQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLS 339 (390)
Q Consensus 264 ~~~~~~~~~~-~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~ 339 (390)
++.+++...+ +....+ ...+..++.+...+...+++.|.+|++ +|++++++.....++|..++|.+.|++.+.. +
T Consensus 88 lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-G 166 (493)
T PRK15462 88 IGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-S 166 (493)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-C
Confidence 5555444332 222222 333455666777777788999999875 6899999999999999999999999998865 5
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhhh
Q 016418 340 TDAPFNCKGFSIIVASICLMVSLSCAC 366 (390)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (390)
++.. |.+.++..+++.+...
T Consensus 167 w~~~-------F~iaaigm~l~li~~~ 186 (493)
T PRK15462 167 WAMG-------FGLAAVGMIAGLVIFL 186 (493)
T ss_pred hHHH-------HHHHHHHHHHHHHHHH
Confidence 5553 3444444444444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=112.33 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=103.0
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HHHHHH
Q 016418 214 AVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LSASFG 285 (390)
Q Consensus 214 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g 285 (390)
..+|.+ .+.+|.++.+.|+..+...+... ...+.+.||++||+ +.....++.+...+.++.+.++ ..++.|
T Consensus 30 ~~~~~l-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G 108 (390)
T PRK03545 30 GLLSDI-AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIA 108 (390)
T ss_pred cchHHH-HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345554 45579999999988766654433 34579999999999 6666667777777788877776 557788
Q ss_pred HHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 286 VIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
++.+...+...+++.|..|+++|++++|+......++..++|++++.+.+.. ++++.+
T Consensus 109 ~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f 166 (390)
T PRK03545 109 FAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTF 166 (390)
T ss_pred HHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-cHHHHH
Confidence 8888888889999999999999999999999999999999999999998866 665533
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-11 Score=111.52 Aligned_cols=146 Identities=11% Similarity=0.096 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHh
Q 016418 196 RGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALF 268 (390)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~ 268 (390)
....+..++.++........+|.+.++ +|+++.+.|++.+...+... +..+++.||++||+ +.+..+++.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~ 104 (434)
T PRK11663 26 ITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHH
Confidence 344455555555555667777777766 69999999988776655544 45589999999998 66666667777
Q ss_pred HhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCC
Q 016418 269 YGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAP 343 (390)
Q Consensus 269 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~ 343 (390)
....++.+.+. ..++.|++.+...+...+++.+.+|+++||+++|+.+...++|..++|.+.+.+.+.. ++++.
T Consensus 105 ~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~ 179 (434)
T PRK11663 105 FGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-GWRYG 179 (434)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHH
Confidence 77777776665 4466788888888888999999999999999999999999999999999999998866 55553
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-11 Score=108.56 Aligned_cols=146 Identities=12% Similarity=0.029 Sum_probs=112.2
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~ 264 (390)
++.++...+..++...........+|.++++++|.|+.+.|++.+...+...+ ..|.+.||++||+ +.+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGL 93 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHH
Confidence 56667777777777777778888899898888899999999998877766554 4589999999999 3232222
Q ss_pred HHH---hHhc-----ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 265 YAL---FYGL-----AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 265 ~~~---~~~~-----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+.+ .... .++.+.++ ..++.|++.+...+...++..+..|+|+|++++|..+.....+..+||.+++.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~ 173 (392)
T PRK12382 94 AGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS 173 (392)
T ss_pred HHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 1111 12334443 55788888888888888899999999999999999999999999999999999987
Q ss_pred cc
Q 016418 336 WF 337 (390)
Q Consensus 336 ~~ 337 (390)
..
T Consensus 174 ~~ 175 (392)
T PRK12382 174 HF 175 (392)
T ss_pred cc
Confidence 65
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-10 Score=98.78 Aligned_cols=217 Identities=12% Similarity=0.035 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHH
Q 016418 15 LLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIV 94 (390)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i 94 (390)
.....+...+..+..|.+=...++. |.++ .+++.+.........+..++.|.++||+|||+.-+.-+++.++
T Consensus 40 l~vY~La~~aDWLQGpY~Y~LY~~y---g~~~-----~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~ 111 (354)
T PF05631_consen 40 LLVYLLAMAADWLQGPYLYALYESY---GFSE-----HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSL 111 (354)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHc---CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 3445556677778777655444443 4444 5558889999999999999999999999999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH------------------------HHHHHHHHHHHHHHHh
Q 016418 95 PFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------VSIALLIFVPVYMQFF 150 (390)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------~~~~~~~~~~~~~~~~ 150 (390)
+++. -..++ ++.++++|++.|+ +.....+.-.++. ..+++.+...++.-+.
T Consensus 112 scl~-k~~~~---~~~L~~GRvlgGi-aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l 186 (354)
T PF05631_consen 112 SCLT-KHSSN---YPVLLLGRVLGGI-ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL 186 (354)
T ss_pred HHHH-Hhccc---cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 8864 44577 9999999999999 5455555555555 0111222222222111
Q ss_pred cccCCCCCcccc---------------cccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHH
Q 016418 151 LVETVESAPRKD---------------QESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAV 215 (390)
Q Consensus 151 ~~e~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (390)
..........+- ..-.++..+..+..+..++.++.++.++++|+++.+.+...++-...+.+...
T Consensus 187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVfl 266 (354)
T PF05631_consen 187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFL 266 (354)
T ss_pred HHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheee
Confidence 111100000000 00000000000011122366777888899999999999999988888877776
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 016418 216 LLFYLKAVFGFNKNQFSEILMMVGIGSIVSQ 246 (390)
Q Consensus 216 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 246 (390)
+.+-++.. + +....|++++......++++
T Consensus 267 WtPaL~~~-~-~~~P~GlIFssFM~a~MlGS 295 (354)
T PF05631_consen 267 WTPALDPD-D-EELPLGLIFSSFMVAMMLGS 295 (354)
T ss_pred eeceecCC-C-CCCCchHHHHHHHHHHHHHH
Confidence 66666522 1 23346888877766666654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-11 Score=110.12 Aligned_cols=141 Identities=11% Similarity=-0.016 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcc
Q 016418 200 FVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLA 272 (390)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 272 (390)
...+.............|.+.+ .+|.++.+.+++.+...+... +..+.+.||++||+ +.....++.+.....
T Consensus 12 ~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 90 (385)
T TIGR00710 12 CLSILGPLGIDMYLPAFPEIAA-DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS 90 (385)
T ss_pred HHHHHHHHHHHHhcccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555556665555 469999999988776655444 45588999999998 555666666666677
Q ss_pred cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 273 WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 273 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
++.+... ..++.|++.+...+...+++.|..|+++|+++.|+.+....++..++|.+++.+.+.. +++.
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~ 160 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-SWHA 160 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH
Confidence 7766665 5578899999999999999999999999999999999999999999999999998865 5444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-11 Score=109.15 Aligned_cols=130 Identities=11% Similarity=-0.015 Sum_probs=103.9
Q ss_pred hHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HHH
Q 016418 211 GISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LSA 282 (390)
Q Consensus 211 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~ 282 (390)
.....+|.+.+ .+|+++.+.++..+...+... ...+.+.||++||+ +.++.+++.+.....++.+.++ ..+
T Consensus 38 ~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 116 (394)
T PRK10213 38 LPVSLLTPMAQ-DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRA 116 (394)
T ss_pred HHHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 33445666555 569999999987655554444 34578999999998 5666666666777777777776 568
Q ss_pred HHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 283 SFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 283 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
+.|++.+...+...+++.|.+|+++|+++.++.....+++..++|.+++.+.+.. ++++
T Consensus 117 l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~ 175 (394)
T PRK10213 117 CLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GWRN 175 (394)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHH
Confidence 8899999999999999999999999999999999999999999999999999876 5554
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-11 Score=108.52 Aligned_cols=142 Identities=15% Similarity=0.085 Sum_probs=108.8
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~ 264 (390)
+|+++.+.+..++..++........+...++ +|.++.+.+++.+...+... ...|.+.||++||+ +..+.++
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~ 80 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLL 80 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHH
Confidence 4667778888888887766666666666544 47788888877665555444 45588999999999 4444444
Q ss_pred HHHhHhcccchhHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 265 YALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
+.+.+....+. ....++.|++.+...|...+++.|.+|+++|+++.|+.+....++..+||.++|.+.++
T Consensus 81 ~~~~~~~~~~~--~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 81 GCLLMLFGIHP--LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443443333 33456789999999999999999999999999999999999999999999999999985
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-11 Score=110.51 Aligned_cols=146 Identities=15% Similarity=0.073 Sum_probs=114.9
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~ 264 (390)
++++..+.+..+...+........+|.++++.+|.|+.+.|+..+...+...+ ..|.+.||++||+ +.+..++
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 93 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL 93 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence 66777888888888888888999999999888899999999988777665554 4589999999999 3333333
Q ss_pred HHHhHh---cccc-----hhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 265 YALFYG---LAWA-----SWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 265 ~~~~~~---~~~~-----~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+..... ..++ .+.++ ..++.|++.+...+...++..+..|+++|+++.++......+|..+||.+++.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~ 173 (399)
T PRK05122 94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH 173 (399)
T ss_pred HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 322222 2222 22233 45788999998889888999999999999999999999999999999999999988
Q ss_pred cc
Q 016418 336 WF 337 (390)
Q Consensus 336 ~~ 337 (390)
..
T Consensus 174 ~~ 175 (399)
T PRK05122 174 WG 175 (399)
T ss_pred cc
Confidence 65
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-11 Score=108.44 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=119.5
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~ 264 (390)
++.++.+....++...........+|.+.++. |.|..+.|++.+...+... +..+.+.||++||+ +....++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQE-HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888888888899999999999999865 9999999999877765554 35589999999998 5666666
Q ss_pred HHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 265 YALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
+.......++.+.++ ..++.|++.+...|...+...+..++++|++++|..+...++|..+||.+.+.+.+.
T Consensus 84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 84 GCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 666677777777665 557889998888888888888888889999999999999999999999999998765
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-11 Score=109.67 Aligned_cols=149 Identities=12% Similarity=0.010 Sum_probs=119.5
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~ 264 (390)
++.++.+....+............+|.+.++ +|.+..+.|+..+...+... ...+.+.||++||+ +....++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI 80 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence 3456667777777777777778888876654 69999998888776665554 45588999999998 6666677
Q ss_pred HHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 265 YALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
+.++..++++.+.++ ..++.|++.+...+.....+.+..|+++|++++|.......++..++|.+++.+.+.. ++++
T Consensus 81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr~ 158 (382)
T PRK10091 81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-SWRY 158 (382)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-cHHH
Confidence 777788888887776 5678899888888888888999999999999999999999999999999999988865 5554
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.8e-11 Score=110.87 Aligned_cols=148 Identities=14% Similarity=0.045 Sum_probs=118.1
Q ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHH---HHHHHHHHHhhHHHHH----HHHHHHHH
Q 016418 193 PTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIG---SIVSQILVLPLLNPFV----ALLASIAY 265 (390)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~ 265 (390)
+.++.+.+..++...........+|.+.++ +|.++.+.+++.+...+. ..+..+.+.||++||+ +.....++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 356677777788777888888899998876 599999888776554433 3456689999999998 44555555
Q ss_pred HHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 266 ALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 266 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
.+.....++.+.++ ..++.|++.+...|...+.+.|..|+++|+++.|+.+...++|..+||.++|.+.+.. ++++
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~ 165 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHW 165 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHH
Confidence 55666666666665 5688899999999999999999999999999999999999999999999999999876 5554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-11 Score=110.49 Aligned_cols=150 Identities=16% Similarity=0.096 Sum_probs=118.2
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHH---HHHHHHHHHhh-HHHHH----HHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIG---SIVSQILVLPL-LNPFV----ALLASI 263 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~---~~~~~~~~~~~-~~~~~----~~~~~~ 263 (390)
.|.++.++...+...+++++...+++.|+++.+|++..+.+++....... ..+.+|+++|| +|||+ +.++..
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 45567777788888899999999999999999999998877765444322 22467999999 99998 666666
Q ss_pred HHHHhHhcccchhH-H-HHHHHHHHHHhhhHHHHHHHHhhccCCCc--hhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 016418 264 AYALFYGLAWASWV-P-YLSASFGVIYVLVKPSTYAIISKASGLNN--QGKAQGFIAGVQSISSLLSPLAMSPLTSWFLS 339 (390)
Q Consensus 264 ~~~~~~~~~~~~~~-~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~ 339 (390)
++.+......+... + ....+.+++.+...|...+++.|.+|+++ |++++++.....++|..+||.++|++.++. +
T Consensus 93 ~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-g 171 (489)
T PRK10207 93 IGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-G 171 (489)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 77666666654332 3 24567788889898999999999998774 578999999999999999999999999876 5
Q ss_pred CCC
Q 016418 340 TDA 342 (390)
Q Consensus 340 ~~~ 342 (390)
+++
T Consensus 172 w~~ 174 (489)
T PRK10207 172 YSV 174 (489)
T ss_pred hHH
Confidence 544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-11 Score=107.02 Aligned_cols=158 Identities=10% Similarity=0.072 Sum_probs=114.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH-----HHHHHHHHHHhHh
Q 016418 199 SFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV-----ALLASIAYALFYG 270 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 270 (390)
++.+++..++.......+|.|+++++|.++.+.|++.+...+...+ ..+.+.||.+||+ +.....++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 4567778888888999999999888899999999988776654443 4478899999776 3333344555666
Q ss_pred cccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhH--HHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCC
Q 016418 271 LAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKA--QGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCK 347 (390)
Q Consensus 271 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~ 347 (390)
.+++.+.++ ..++.+.+.+...|...++..|..|++.|+++ .+......++|..+||.+++.+.+.. +++.
T Consensus 83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~----- 156 (375)
T TIGR00899 83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTV----- 156 (375)
T ss_pred hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHH-----
Confidence 677776655 44566666666778888888888887777654 57788888999999999999998865 5554
Q ss_pred chHHHHHHHHHHHHHHh
Q 016418 348 GFSIIVASICLMVSLSC 364 (390)
Q Consensus 348 ~~~~~~~~~~~~~~~~~ 364 (390)
.+.+.+.+.++..+.
T Consensus 157 --~f~~~~~~~~~~~~~ 171 (375)
T TIGR00899 157 --MFLTAALAFVLCGVL 171 (375)
T ss_pred --HHHHHHHHHHHHHHH
Confidence 335555544444433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=104.57 Aligned_cols=141 Identities=20% Similarity=0.153 Sum_probs=108.5
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHH
Q 016418 194 TLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYA 266 (390)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~ 266 (390)
.++...+..+...........+.|.++++.+|+|+.+.+++.+...+... +..+.+.||++||+ +.+...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34556666777777777788888877888889999999988766655444 45589999999998 666666666
Q ss_pred HhHhccc-chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 267 LFYGLAW-ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 267 ~~~~~~~-~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+...+.+ +.+.++ ..++.|++.+. .+...+++.+..|+++|+++.++.....++|..+++.+.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 82 LWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 7777777 766665 55667777543 45567889999999999999999998888888888888877765
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-11 Score=108.18 Aligned_cols=142 Identities=12% Similarity=0.031 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHH
Q 016418 195 LRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYAL 267 (390)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (390)
+....+..+...+.........|.+. +.+|.++.+.+++.+...+... +..+.+.||++||+ +.+..+++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 92 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVA-GEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTL 92 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666554 5569999999988766655444 45589999999998 5555556666
Q ss_pred hHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 268 FYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
...+.++.+..+ ..++.|++.+...+...+++.|..|+++|+++.|+.+....+|..+++.+.+.+.+..
T Consensus 93 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 163 (405)
T TIGR00891 93 ACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW 163 (405)
T ss_pred HHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666777777665 5688899999999999999999999999999999999999999999999999988764
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=106.20 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhc
Q 016418 199 SFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGL 271 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 271 (390)
.+.+++............| .+++++|++..+.|+..+...+... +..+++.||++||+ +.++..++.+...+
T Consensus 14 ~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 92 (412)
T TIGR02332 14 FILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMF 92 (412)
T ss_pred HHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 3333443444444444444 6677789999999998876665544 34488999999998 66666677777777
Q ss_pred ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 272 AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 272 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+++.+.++ ..++.|++.+...|....++.|.+|+++|+++.|+.+....+|..+++.+++.+.+
T Consensus 93 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 93 ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77877665 56888999999999999999999999999999999999999999999999998875
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-11 Score=109.06 Aligned_cols=130 Identities=13% Similarity=0.114 Sum_probs=103.9
Q ss_pred hHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HHH
Q 016418 211 GISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LSA 282 (390)
Q Consensus 211 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~ 282 (390)
......|. +++.+|.++.+.+++.+...+... +..+.+.||++||+ +.+...++.......++.+.++ ..+
T Consensus 12 ~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (399)
T TIGR00893 12 NLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRV 90 (399)
T ss_pred hhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 33344444 556679999999988876665544 45589999999998 5556666666777777777666 558
Q ss_pred HHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 283 SFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 283 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
+.|++.+...+....++.|..|+++|+++.|+.+....+|..++|.+.+.+.+.. ++++
T Consensus 91 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~ 149 (399)
T TIGR00893 91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQW 149 (399)
T ss_pred HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-CchH
Confidence 8899999999999999999999999999999999999999999999999988865 5444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.7e-11 Score=109.48 Aligned_cols=171 Identities=12% Similarity=0.145 Sum_probs=126.4
Q ss_pred hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHH
Q 016418 190 VSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLAS 262 (390)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~ 262 (390)
+|+|.++.+++...+.+++......-.+.+..+. .-|+...+++.....+... +..|.++||++||+ +-+..
T Consensus 7 lr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~l-t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~ 85 (524)
T PF05977_consen 7 LRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQL-TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLR 85 (524)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 4689999999999999999888888888777665 5578888887766554444 45689999999999 11111
Q ss_pred -----HHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 263 -----IAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 263 -----~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
.+..+...-..+.|.++ +.++.|++.+...|+.++.+.+.+|+++..++.++.+...++...+||.++|.++..
T Consensus 86 ~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~ 165 (524)
T PF05977_consen 86 ALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF 165 (524)
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 11111222223556665 668899999999999999999999999999999999999999999999999999987
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHhhhccc
Q 016418 337 FLSTDAPFNCKGFSIIVASICLMVSLSCACMLD 369 (390)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (390)
. |... .|.+.++..++........+
T Consensus 166 ~-G~~~-------~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 166 F-GAAA-------AFLINALSFLISILALLRWK 190 (524)
T ss_pred H-HHHH-------HHHHHHHHHHHHHHHHHHcc
Confidence 6 5554 34555555555444443333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=109.45 Aligned_cols=146 Identities=10% Similarity=0.011 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFY 269 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~ 269 (390)
.+.+..+.............|.+.++ +|.++.+.++..+...+... ...+++.||++||+ +.....++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 34455556666666677777776665 59998888888766555444 45689999999998 666666777777
Q ss_pred hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 270 GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 270 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
...++.+.++ ..++.|++.+...+...+++.|.+|+++|+++.++......+|..+||.++|.+.++. ++++.+
T Consensus 85 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w~~~f 159 (485)
T TIGR00711 85 GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-HWRWIF 159 (485)
T ss_pred hCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-Cceehh
Confidence 7777777665 5678899999999999999999999999999999999999999999999999999876 666544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-10 Score=108.43 Aligned_cols=148 Identities=15% Similarity=0.015 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHH---HHHHHHHHHhhHHHHH----HHHHHHHHHH
Q 016418 195 LRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIG---SIVSQILVLPLLNPFV----ALLASIAYAL 267 (390)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (390)
+..+.+..++...-....+..+|.+.++ +|.+..+.++..+...+. ..+..|.++||++||+ +.....++.+
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4455666677777777788888888765 588888888877555543 3345689999999999 6667777777
Q ss_pred hHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhcc-CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 268 FYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKAS-GLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
..+.+++.+.++ ..++.|++.+...|.....+.+.. |+++|++++|+......+|..+||.++|.+.++. ++++.|
T Consensus 87 ~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-gwr~~f 164 (495)
T PRK14995 87 AAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF-YWGSVF 164 (495)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHH
Confidence 888888888776 557889999988888777776654 7789999999999999999999999999999976 665533
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-10 Score=104.54 Aligned_cols=147 Identities=9% Similarity=-0.016 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHH
Q 016418 195 LRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYAL 267 (390)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (390)
.+...+..++...........+|.+.+ .+|+|..+.++..+...+... +..+++.||++||+ +.....++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 87 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIAE-YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVA 87 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444555555555556666777655 569999998888766554443 45689999999998 5555566666
Q ss_pred hHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 268 FYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
...+.++.+..+ ..++.|++.+...+...+.+.|..|+++|+++.+..+....++..++|.+.+.+.+...++++
T Consensus 88 l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~ 163 (394)
T PRK03699 88 GLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW 163 (394)
T ss_pred HHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 667777766665 557888888888888888999999999999999999888899999999999888754224444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=107.98 Aligned_cols=153 Identities=15% Similarity=0.136 Sum_probs=115.3
Q ss_pred cCc-chhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHH---HHHHHHHHHHhh-HHHHH----HHHH
Q 016418 191 SSP-TLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGI---GSIVSQILVLPL-LNPFV----ALLA 261 (390)
Q Consensus 191 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~---~~~~~~~~~~~~-~~~~~----~~~~ 261 (390)
++| .++..+...++..++++....+++.|+++.+|++..+.+........ ......|++.|| ++||+ +.+.
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 444 57888888888899999999999999999999998887666544332 222456999999 59998 5556
Q ss_pred HHHHHHhHhcccc-hhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCc--hhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 262 SIAYALFYGLAWA-SWVPY-LSASFGVIYVLVKPSTYAIISKASGLNN--QGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 262 ~~~~~~~~~~~~~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
..++...+.+.++ .+.++ ...+.+++.+...+...+++.+.+|+++ ++.+.++.+...++|..+||.+.|++.+..
T Consensus 98 ~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~ 177 (500)
T PRK09584 98 LAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY 177 (500)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666543 33333 4467788888888888899999998653 456788889999999999999999999876
Q ss_pred ccCCCCC
Q 016418 338 LSTDAPF 344 (390)
Q Consensus 338 ~~~~~~~ 344 (390)
++++.|
T Consensus 178 -g~~~~F 183 (500)
T PRK09584 178 -GWSVAF 183 (500)
T ss_pred -CHHHHH
Confidence 665533
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=105.70 Aligned_cols=135 Identities=16% Similarity=0.081 Sum_probs=103.7
Q ss_pred HhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-
Q 016418 208 GMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY- 279 (390)
Q Consensus 208 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~- 279 (390)
.........|.+. +.+|.++.+.+++.+...+... +..+.+.||++||+ +.....++.+.....++.+..+
T Consensus 32 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (398)
T TIGR00895 32 DLAAMGFAAPAIS-AEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLI 110 (398)
T ss_pred HHHHHHhhHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 3334444455544 4569999988888766554443 45588999999998 5555556666666667766655
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 280 LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
..++.|++.+...+...+++.|..|+++|+++.|+.+....+|..++|.+.+.+.+.. +++..+
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~~ 174 (398)
T TIGR00895 111 LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWRSLF 174 (398)
T ss_pred HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-cceeeh
Confidence 5578888888899999999999999999999999999999999999999999998876 665544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-11 Score=104.44 Aligned_cols=167 Identities=15% Similarity=0.065 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFY 269 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~ 269 (390)
...+.+...++.--.++...|.. .+..++|..+.|.+.+...+...+ ..|.++||.+.|. ++++.++..+++
T Consensus 33 ~~fiGYa~fYl~RknF~~a~p~l-~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~ 111 (448)
T COG2271 33 SIFIGYAAFYLTRKNFNLAMPAL-IEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILF 111 (448)
T ss_pred HHHHHHHHHHHHHHhHhhccHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHH
Confidence 33444444444444444444444 445589999999998877766553 5689999999888 889999999999
Q ss_pred hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhh--hhhhcccccCCCCCCC
Q 016418 270 GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAM--SPLTSWFLSTDAPFNC 346 (390)
Q Consensus 270 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~--g~l~~~~~~~~~~~~~ 346 (390)
++.++.+.+. +..+-|.+.+...|.....+...+|+++||+..++.|+..++|+.+.|++. +.+.++. +.+..|
T Consensus 112 Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~-~w~~~f-- 188 (448)
T COG2271 112 GFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-GWRAAF-- 188 (448)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc-chhHHH--
Confidence 9998877776 667889999999999999999999999999999999999999999999999 8888765 555544
Q ss_pred CchHHHHHHHHHHHHHHhhhcccccc
Q 016418 347 KGFSIIVASICLMVSLSCACMLDTEE 372 (390)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
++.+++.++..++.++..|++
T Consensus 189 -----~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 189 -----YFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred -----HHHHHHHHHHHHHHHHHhCCC
Confidence 445555554444444443333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-10 Score=104.43 Aligned_cols=143 Identities=14% Similarity=-0.015 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHH--HhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhH
Q 016418 199 SFVSFFYKLGMSGISAVLLFY--LKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFY 269 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~ 269 (390)
.+..+.....+.....+.|.+ +++.+|.++.+.++..+...+... +..+.+.||++||+ +.....++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 88 (401)
T PRK11043 9 VYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM 88 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 333333334444445555544 455679999999988776655443 45689999999999 445555566666
Q ss_pred hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 270 GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 270 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
...++.+... ..++.|++.+...+...+.+.|.+|++++++..+..+....++..++|.+++.+.+.. +++.
T Consensus 89 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~ 161 (401)
T PRK11043 89 LWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-GWQA 161 (401)
T ss_pred HHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHH
Confidence 6667766665 4567788877777777888999999888999999999889999999999999998866 5544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-10 Score=104.85 Aligned_cols=122 Identities=14% Similarity=0.063 Sum_probs=86.3
Q ss_pred HHHHHHHHHhhhcCCCchhHHHHHHHHHH---HHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HHHH
Q 016418 212 ISAVLLFYLKAVFGFNKNQFSEILMMVGI---GSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LSAS 283 (390)
Q Consensus 212 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~ 283 (390)
.....| .+.+.+|++..+.+...+...+ .+.+..+++.||++||+ +.+..+++.++..+.++.+.++ ..++
T Consensus 55 ~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l 133 (476)
T PLN00028 55 AAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFF 133 (476)
T ss_pred HHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 333344 4456679999988876544433 33356689999999998 5555556666666677766665 4466
Q ss_pred HHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 284 FGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
.|++.+...+ ...++.+.+|+++||++.|+.+...++|..+++.+.+.+.+
T Consensus 134 ~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~ 184 (476)
T PLN00028 134 IGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFP 184 (476)
T ss_pred HHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777765433 45678899999999999999998888888888777766543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-10 Score=103.25 Aligned_cols=146 Identities=14% Similarity=0.032 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHH
Q 016418 195 LRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYAL 267 (390)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (390)
+.......+....+.......+|.+.++ +|.+..+.++..+...+... +..+++.||++||+ +.....++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3444445555555556666677776665 59999888887766554443 45689999999998 5555566666
Q ss_pred hHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 268 FYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
.....++.+..+ ..++.|++.+...+...+++.|..|+++|+++.|..+....++..++|.+++.+.+.. +++.
T Consensus 84 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-g~~~ 158 (392)
T PRK10473 84 LCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-PWQS 158 (392)
T ss_pred HHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHH
Confidence 666666666554 5577788888888888999999999999999999999999999999999998887754 4433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-10 Score=101.71 Aligned_cols=149 Identities=11% Similarity=0.062 Sum_probs=106.8
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH----HHHHHHHhhHHHHH-----HHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI----VSQILVLPLLNPFV-----ALLAS 262 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~ 262 (390)
|.+.+...+..++...........+|.|+++.+|.++.+.|+..+...+.+. +.+++ .||.+||+ +.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~ 92 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLG 92 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHH
Confidence 5566777888899999988899999999999999999999998654443332 34455 89999887 23333
Q ss_pred HHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCch--hhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 016418 263 IAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQ--GKAQGFIAGVQSISSLLSPLAMSPLTSWFLS 339 (390)
Q Consensus 263 ~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~ 339 (390)
.+......++++.+.++ ...+.+...+...|....+..+..+++.| +...+..+...++|..+||.+++.+.++. +
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-g 171 (393)
T PRK15011 93 VLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-S 171 (393)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-C
Confidence 34445555666666554 33444444556677777788777665544 34457888889999999999999999876 6
Q ss_pred CCC
Q 016418 340 TDA 342 (390)
Q Consensus 340 ~~~ 342 (390)
++.
T Consensus 172 w~~ 174 (393)
T PRK15011 172 FTV 174 (393)
T ss_pred hHH
Confidence 655
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-10 Score=101.56 Aligned_cols=145 Identities=19% Similarity=0.133 Sum_probs=109.1
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~ 264 (390)
++.+....+..++..........+.+.+.++ +|.++.+.|...+..++... ...+.+.||++||+ +..+..+
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~ 90 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCV 90 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 5666777888888888888788888988866 59999999998776665544 45589999999998 4444444
Q ss_pred HHHhH---hcc-cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHH-hhhhhhhhhhhccc
Q 016418 265 YALFY---GLA-WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISS-LLSPLAMSPLTSWF 337 (390)
Q Consensus 265 ~~~~~---~~~-~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~-~~g~~~~g~l~~~~ 337 (390)
+.+.. ... .+.+..+ ..++.|++.+...+...+.+.+..|+++|++++|+.+...++|. .++|.+++.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~ 169 (402)
T TIGR00897 91 GHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF 169 (402)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33322 232 3444444 45667888777777777888899999999999999999999997 57999999988765
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.8e-10 Score=107.42 Aligned_cols=151 Identities=9% Similarity=-0.049 Sum_probs=106.4
Q ss_pred HHhhhcCcchhHHHHHHHHHHHHh----hhHHHHHHHHHhhhcCCCchhHHHHHHHHHH---HHHHHHHHHHhhHHHHH-
Q 016418 186 ALMVVSSPTLRGISFVSFFYKLGM----SGISAVLLFYLKAVFGFNKNQFSEILMMVGI---GSIVSQILVLPLLNPFV- 257 (390)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~- 257 (390)
++.....+..|.+.+...+..+.. ......+| .+.+.+|.+..+.+++.+...+ ++.+..++++||++||+
T Consensus 156 l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp-~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~ 234 (742)
T TIGR01299 156 IQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLP-SAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQC 234 (742)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 344444454454444444333332 22333444 3444568998888877655444 34456689999999999
Q ss_pred ---HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh
Q 016418 258 ---ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPL 333 (390)
Q Consensus 258 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l 333 (390)
+.++.+++.++..++++.+.++ ..++.|++.+...+...+++.|.+|++.||+..++.+....+|..+++.++..+
T Consensus 235 lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 235 LLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666677766665 568889999999999999999999999999999999999999999999888777
Q ss_pred hccc
Q 016418 334 TSWF 337 (390)
Q Consensus 334 ~~~~ 337 (390)
....
T Consensus 315 l~~~ 318 (742)
T TIGR01299 315 IPHY 318 (742)
T ss_pred HHhc
Confidence 6543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-10 Score=104.01 Aligned_cols=138 Identities=14% Similarity=0.040 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhc
Q 016418 199 SFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGL 271 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 271 (390)
....++............|.+.++ +|+++.+.+++.+...+... +..+.+.||++||+ +..+..++.+....
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 99 (406)
T PRK11551 21 FLVALLEGLDLQSAGVAAPRMAQE-FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ 99 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 344444445555556666666554 69999999988776655444 45589999999999 44455555556666
Q ss_pred ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 272 AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 272 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
.++.+... ..++.|++.+...+...+++.|.+|+++|++++++.+....+|..+++.+++.+.+..
T Consensus 100 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 166 (406)
T PRK11551 100 AWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA 166 (406)
T ss_pred hccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 67766665 5578899988889999999999999999999999999999999999999988777654
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=103.70 Aligned_cols=132 Identities=17% Similarity=0.095 Sum_probs=104.5
Q ss_pred hhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-H
Q 016418 209 MSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-L 280 (390)
Q Consensus 209 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~ 280 (390)
.......+|.+.++ +|.++.+.++..+...+... +..+.+.||++||+ +....+++.......++.+..+ .
T Consensus 7 ~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 7 IDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34455677777766 59999999988766655444 45588999999988 5556666666666677766665 5
Q ss_pred HHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 281 SASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 281 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
.++.|++.+...+...+++.|..|+++|+++.++.+....+|..++|.+++.+.+.. +++.
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~ 146 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHA 146 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHH
Confidence 577888888888899999999999999999999999999999999999999998865 5444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-10 Score=100.46 Aligned_cols=140 Identities=16% Similarity=0.074 Sum_probs=98.7
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~ 264 (390)
+|.++...+................+.+-++.+|+|+.+.+++.++..+...+ ..+.+.||+|.|+ +.+...+
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 34555555555555555555555555555556899999999888766655553 3489999999887 5555555
Q ss_pred HHHhHhcc-----cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhh
Q 016418 265 YALFYGLA-----WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSP 332 (390)
Q Consensus 265 ~~~~~~~~-----~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~ 332 (390)
..+...++ ++.+.++ ..++.|++ +..++.....+++.+|+++||++.|+.....++|..+++.+...
T Consensus 113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555554 5666665 56778886 66788889999999999999999999976667777665555544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-10 Score=102.61 Aligned_cols=146 Identities=19% Similarity=0.164 Sum_probs=106.4
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchh-----HHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHH
Q 016418 194 TLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQ-----FSEILMMVGIGSI---VSQILVLPLLNPFV----ALLA 261 (390)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~ 261 (390)
.+....+..++..........++|.+.++ +|.+..+ .|.+.+...+... ...+.+.||++||+ +...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 93 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 34455667777777878888899999876 4877554 3555555444433 34588999999998 4445
Q ss_pred HHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 016418 262 SIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLST 340 (390)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~ 340 (390)
.+++.......++.+.++ ..++.|++.+ ..+...+.+.+..|+++|+++.|+.+....+|..++|.+.+.+.+.. ++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~ 171 (408)
T PRK09874 94 MGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY-GL 171 (408)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CH
Confidence 555555566666666655 4456666544 45777788889999999999999999999999999999999998865 54
Q ss_pred CC
Q 016418 341 DA 342 (390)
Q Consensus 341 ~~ 342 (390)
+.
T Consensus 172 ~~ 173 (408)
T PRK09874 172 RP 173 (408)
T ss_pred HH
Confidence 44
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-10 Score=104.29 Aligned_cols=146 Identities=14% Similarity=0.037 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHH
Q 016418 195 LRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYAL 267 (390)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (390)
+....+..+.............|. +++.+|+++.+.++..+...+... +..+.+.||++||+ +.+..+++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~ 98 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYL-IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTG 98 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 334444444444444444444443 455679999988887665554443 45589999999998 5566666666
Q ss_pred hHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 268 FYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
...+.++.+.++ ..++.|++.+...+....++.|..|+++|+++.|+......+|..+++.+.+.+.+.. +++.
T Consensus 99 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-~w~~ 173 (426)
T PRK12307 99 LSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-GWRA 173 (426)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-CHHH
Confidence 777777776665 5588899999999999999999999999999999999999999999999988887765 5544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-10 Score=104.00 Aligned_cols=169 Identities=12% Similarity=0.054 Sum_probs=107.0
Q ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHH
Q 016418 189 VVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLA 261 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~ 261 (390)
.+++|+++...+..++...+.....+++|.|+++++|+++.+.|...+...+...+ ..|.+.||++||+ +...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~ 85 (420)
T PRK09528 6 YLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISG 85 (420)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 34588899998999999988888999999999998899999999998877766664 5589999999998 1111
Q ss_pred HHHHHHhH-hcc-cchhH--HHH-H----HHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhh
Q 016418 262 SIAYALFY-GLA-WASWV--PYL-S----ASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSP 332 (390)
Q Consensus 262 ~~~~~~~~-~~~-~~~~~--~~~-~----~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~ 332 (390)
.++..... ... .+.+. ... . +..+.+.....+....+..+ .+ +++|..+|..+...++|..++|.++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~g~~~g~~~~~~~~g~~i~~~~~g~ 163 (420)
T PRK09528 86 LLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-VS-RRSGFEYGRARMWGSLGWALCAFIAGI 163 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-HH-hhccccchhhHHhhhHHHHHHHHHHHH
Confidence 11111111 100 11111 111 1 12222222233333333332 22 456788899999999999999999999
Q ss_pred hhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhcc
Q 016418 333 LTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACML 368 (390)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
+.+. +++.+ +.+.++..++.....+..
T Consensus 164 l~~~--~~~~~-------f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 164 LFNI--NPQIN-------FWLGSGSALILLVLLFFA 190 (420)
T ss_pred HHhc--CchHh-------HHHHHHHHHHHHHHHhcc
Confidence 9874 44443 344454444444444433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.7e-10 Score=100.00 Aligned_cols=126 Identities=11% Similarity=-0.033 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HH
Q 016418 210 SGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LS 281 (390)
Q Consensus 210 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~ 281 (390)
......+|... +++|+|..+.++..+...+... +..+.+.||++||+ +....+++.+..+++++.+.++ ..
T Consensus 26 ~~~~~~lp~i~-~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r 104 (393)
T PRK09705 26 TSVGPLLPQLR-QASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSA 104 (393)
T ss_pred hccchhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHH
Confidence 34455566555 4569999999998876555444 45589999999999 7788888888888888887766 56
Q ss_pred HHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 282 ASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
++.|++.+...+....++.+..| ++|++++|........|..+|+.+++.+.++.
T Consensus 105 ~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~ 159 (393)
T PRK09705 105 LLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS 159 (393)
T ss_pred HHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899999988888888898887 78999999999999999999999999888764
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.8e-10 Score=101.23 Aligned_cols=133 Identities=16% Similarity=0.043 Sum_probs=100.2
Q ss_pred HhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-
Q 016418 208 GMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY- 279 (390)
Q Consensus 208 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~- 279 (390)
....+...+|.+. +.+|.++.+.+...+...+... ...+.+.||++||+ +.....++.+.....++.+.++
T Consensus 28 ~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 106 (406)
T PRK15402 28 ANDMIQPGMLAVV-EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTL 106 (406)
T ss_pred hhhhHhcchHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 3444555555544 4569999988887766555444 45588999999998 5555556666666667766665
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 280 LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
..++.|.+.+...+...+.+.|.+|+++|++..++......++..++|.+++.+.+.. +++.
T Consensus 107 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-~w~~ 168 (406)
T PRK15402 107 LRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL-PWRG 168 (406)
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CccH
Confidence 5577788888878888899999999999999999998888899999999999998865 5544
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=105.16 Aligned_cols=138 Identities=20% Similarity=0.198 Sum_probs=104.3
Q ss_pred HHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccch
Q 016418 203 FFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWAS 275 (390)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 275 (390)
++.......+....|. +++.+|+++.+.+++.+...+... +..+++.||++||+ +.....++.++....++.
T Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 83 (379)
T TIGR00881 5 AAYYLVRKNFALAMPY-LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL 83 (379)
T ss_pred hHHHHhHHhhhhhhHH-HHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence 3444444555555564 555679999999988776665554 45589999999998 666666677777777777
Q ss_pred hHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhh-hhhhhhcccccCCC
Q 016418 276 WVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPL-AMSPLTSWFLSTDA 342 (390)
Q Consensus 276 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~-~~g~l~~~~~~~~~ 342 (390)
+..+ ..++.|++.+...+...+++.|..|+++|+++.|+.+....+|..++|. +.+.+.+.. +++.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~ 151 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-SWHW 151 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC-Cchh
Confidence 7665 5577888888889999999999999999999999999999999999994 555555543 4443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.6e-10 Score=100.52 Aligned_cols=143 Identities=12% Similarity=-0.030 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHh
Q 016418 198 ISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYG 270 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 270 (390)
......+..+........+|.+.++ +|.++.+.++..+...+... ...+.+.||++||+ +.....++.+...
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 91 (394)
T PRK11652 13 LVLLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL 91 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455556666654 59999999988776665544 34589999999998 5555555555666
Q ss_pred cccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 271 LAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 271 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
..++.+.++ ..++.|++.+...+....+..|..++++++++.+..+....++..++|.+++.+.+.. +++.
T Consensus 92 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~ 163 (394)
T PRK11652 92 FAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRA 163 (394)
T ss_pred HHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHH
Confidence 666666655 5577788887777777888889899899999999999999999999999999998765 5444
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.4e-10 Score=100.63 Aligned_cols=147 Identities=16% Similarity=0.087 Sum_probs=103.8
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~ 264 (390)
||.+|.+....++...+......++|.|+++++|.++.+.|...+...+...+ ..|+++||++||+ +....++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLV 80 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 47788888999999999999999999999988899999999988777766654 4589999999998 2222222
Q ss_pred HHH---hHhccc----chh-HHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 265 YAL---FYGLAW----ASW-VPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 265 ~~~---~~~~~~----~~~-~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
... .+...+ +.+ ... ..++.+++.+...+...++..+..+ ++++.+|......++|..+||.++|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 158 (396)
T TIGR00882 81 LFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS 158 (396)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc
Confidence 111 111111 111 112 2355666777777777777766543 34567788888889999999999998876
Q ss_pred ccccCCC
Q 016418 336 WFLSTDA 342 (390)
Q Consensus 336 ~~~~~~~ 342 (390)
. +++.
T Consensus 159 ~--~~~~ 163 (396)
T TIGR00882 159 I--DPQI 163 (396)
T ss_pred c--CchH
Confidence 4 5544
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-12 Score=119.54 Aligned_cols=313 Identities=14% Similarity=0.170 Sum_probs=2.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHH
Q 016418 15 LLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIV 94 (390)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i 94 (390)
.+..+...+..+.....++.+-+ .++.+..+.|++.+.+-++..+..++..++.+|..|-|++-.+.++.++
T Consensus 9 ~~~~~~q~~~~g~~~~~lttiEr--------RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~ 80 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSLTTIER--------RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL 80 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence 33444444444555555554432 3355557779999999999999999999999998888889999999999
Q ss_pred HHHHHHhcc----C-------------------------------------------chhhHHHHHHHHHHhhcccchHH
Q 016418 95 PFTLLAFNQ----S-------------------------------------------QEFVYAYYVLRTISYIISQGSIF 127 (390)
Q Consensus 95 ~~~~~~~~~----~-------------------------------------------~~~~~~l~~~r~l~G~~~~g~~~ 127 (390)
+.+++++-+ . ...++.++++.++.|+ |+...+
T Consensus 81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~Gi-G~~pl~ 159 (539)
T PF03137_consen 81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGI-GATPLY 159 (539)
T ss_dssp -----------------------------------------------------------------------SS-S-----
T ss_pred HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhc-cccCCc
Confidence 988776511 0 0124667889999999 778888
Q ss_pred HHHHHHH-------------------------------------------------------------------HHHHHH
Q 016418 128 CIAVAYA-------------------------------------------------------------------VSIALL 140 (390)
Q Consensus 128 ~~~~~~i-------------------------------------------------------------------~~~~~~ 140 (390)
+...+|+ +.+.+.
T Consensus 160 tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 160 TLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 9999999 333333
Q ss_pred HHHHHHHHHhcccCCCCCc----ccccccccc----ccccccc------ccccccHHHHHHhhhcCcchhHHHHHHHHHH
Q 016418 141 IFVPVYMQFFLVETVESAP----RKDQESSGL----KKAVNVL------DRRYKSMRDAALMVVSSPTLRGISFVSFFYK 206 (390)
Q Consensus 141 ~~~~~~~~~~~~e~~~~~~----~~~~~~~~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (390)
++..+.. +.+|+..+..+ +++.++.++ .++.+++ .+..+++...++.+.+||.+....+......
T Consensus 240 ~l~aipl-~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~ 318 (539)
T PF03137_consen 240 FLSAIPL-FFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFES 318 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-HcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3333333 33444333221 000000000 0000001 1122344455677889999999999999999
Q ss_pred HHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHH----HHHHHHHHHHhhHHHHH------HHHHHHHHHHh---Hhc--
Q 016418 207 LGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGI----GSIVSQILVLPLLNPFV------ALLASIAYALF---YGL-- 271 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~-- 271 (390)
....++.++.|.|++.+|+.++.+++.+.....+ .+.+.+|++.+|++-+. ..+...+..+. ..+
T Consensus 319 ~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~ 398 (539)
T PF03137_consen 319 FIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLG 398 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeec
Confidence 9999999999999999999999887777655444 55566678877764433 11111111111 000
Q ss_pred ---------c-----------------------------------cch----h-HHH-HHHHHHHHHhhhHHHHHHHHhh
Q 016418 272 ---------A-----------------------------------WAS----W-VPY-LSASFGVIYVLVKPSTYAIISK 301 (390)
Q Consensus 272 ---------~-----------------------------------~~~----~-~~~-~~~~~g~~~~~~~~~~~~~~~~ 301 (390)
. ++. + .+. ..++..+..+..........-+
T Consensus 399 C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR 478 (539)
T PF03137_consen 399 CPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLR 478 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeec
Confidence 0 000 1 111 1122233333444444556678
Q ss_pred ccCCCchhhHHHHHHHHHH-HHHhhhhhhhhhhhccc
Q 016418 302 ASGLNNQGKAQGFIAGVQS-ISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 302 ~~~~~~~g~~~g~~~~~~~-~~~~~g~~~~g~l~~~~ 337 (390)
.+|+++|+.+.|+...+.+ +|.+-||++.|.+.|..
T Consensus 479 ~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 479 CVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -------------------------------------
T ss_pred cCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 9999999999999987765 57788999999999963
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-08 Score=93.50 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHH
Q 016418 280 LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLM 359 (390)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (390)
-.++..+.....+-....+.+|..|+...|+.+++..++.++|..++..++..+.+.++-.+..|.-.....++..++.+
T Consensus 324 d~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~l 403 (433)
T PF03092_consen 324 DTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQL 403 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHH
Confidence 33555666666666667789999999999999999999999999999999999988873222223222234455555555
Q ss_pred HHHHhhhccccccC
Q 016418 360 VSLSCACMLDTEEN 373 (390)
Q Consensus 360 ~~~~~~~~~~~~~~ 373 (390)
+...+....+++++
T Consensus 404 l~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 404 LPLPLLFLLPPQKR 417 (433)
T ss_pred HHHHHHHHcCCCch
Confidence 55555545554333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.1e-10 Score=100.24 Aligned_cols=131 Identities=15% Similarity=0.060 Sum_probs=97.8
Q ss_pred hhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-H
Q 016418 209 MSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-L 280 (390)
Q Consensus 209 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~ 280 (390)
.+......|. +++.+|++..+.++..+...+...+ ..+.+.||++||+ +.+..+++.+...+.++.+.++ .
T Consensus 19 ~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (377)
T TIGR00890 19 VYTWTLLAPP-LGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLT 97 (377)
T ss_pred HhhhhhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445444 4456799999999988777666554 4589999999998 6666677777777888877765 5
Q ss_pred HHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 281 SASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 281 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
..+.|++.+...+.......+..| ++|+++.++......+|..+++++.+.+.+.. +++.
T Consensus 98 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 157 (377)
T TIGR00890 98 YGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE-GVPA 157 (377)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-cHHH
Confidence 567888888877777778888877 67999999999999999888777777766543 4443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.6e-10 Score=103.78 Aligned_cols=146 Identities=14% Similarity=0.081 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHH
Q 016418 195 LRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYAL 267 (390)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (390)
+..+.+..++..+.........|.+. +.+|.++.+.+.+.+...+... +..+.+.||++||+ +.+..+++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 100 (496)
T PRK03893 22 FSAAWLGYLLDGFDFVLITLVLTEVQ-GEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTL 100 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34455555555566656666666554 5569999988887665554433 45689999999998 5555566666
Q ss_pred hHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 268 FYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
...+.++.+.++ ..++.|++.+...+...+++.|.+|+++|+++.++......+|..++|.+.+.+.+.. +++.
T Consensus 101 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~ 175 (496)
T PRK03893 101 ACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW-GWRA 175 (496)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHH
Confidence 666777766665 5678898888889999999999999999999999999999999999999999998865 4443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=98.05 Aligned_cols=139 Identities=14% Similarity=0.199 Sum_probs=117.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHH---HHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHH
Q 016418 225 GFNKNQFSEILMMVGIGSIVSQ---ILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTY 296 (390)
Q Consensus 225 g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~ 296 (390)
+-+..++|++++...+...+.+ |.+.||+++|. ++..+..+.+++++..+++..+ +-.+.|++.+.......
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 3455678999988888777644 78899999998 8888888999999999988776 66899999999999999
Q ss_pred HHHhhccCCCc-hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhccccc
Q 016418 297 AIISKASGLNN-QGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTE 371 (390)
Q Consensus 297 ~~~~~~~~~~~-~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
++++|.+|+++ ||+++|+.-.+.++|-.+||+.+|.+||.. |++.|| ++.++++++-..+.++..+.
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPF-------lVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPF-------LVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcH-------HHHHHHHHHHHHHHHheeCc
Confidence 99999999775 699999999999999999999999999988 888866 66777777666665554444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=101.29 Aligned_cols=148 Identities=21% Similarity=0.181 Sum_probs=99.2
Q ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHH
Q 016418 193 PTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAY 265 (390)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~ 265 (390)
+.++...+...........+....| ++++. |.++.+.++..+...+... +..+++.||++||+ +.++.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 104 (438)
T TIGR00712 27 QVFLGIFFGYAAYYLVRKNFALAMP-YLVEQ-GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV 104 (438)
T ss_pred HHHHHHHHHHHHHHHHhccHHhhhH-HHHHc-CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence 3333334444444333333444445 45554 9999999988776665554 45589999999988 44455555
Q ss_pred HHhHhcc----cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 016418 266 ALFYGLA----WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLST 340 (390)
Q Consensus 266 ~~~~~~~----~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~ 340 (390)
.+..... ++.+... ..++.|++.+...+.....+.|.+|+++||+++|+.+....++..++|.+.+...+...++
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w 184 (438)
T TIGR00712 105 MLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW 184 (438)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 5444433 2333333 4467788888888888888999999999999999999999999999998887655432244
Q ss_pred CC
Q 016418 341 DA 342 (390)
Q Consensus 341 ~~ 342 (390)
+.
T Consensus 185 ~~ 186 (438)
T TIGR00712 185 HA 186 (438)
T ss_pred HH
Confidence 43
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=97.76 Aligned_cols=133 Identities=8% Similarity=-0.105 Sum_probs=93.3
Q ss_pred HHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH
Q 016418 207 LGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY 279 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 279 (390)
.....+...+|.+.+ ++|+++.+.|++.+...+... +..|++.||++||+ .......+.......++.+.++
T Consensus 5 ~~~~~~~~~lp~i~~-~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (368)
T TIGR00903 5 AIWVTFSPVLSLVAE-DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLL 83 (368)
T ss_pred HHHHHHHhhHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 344555666666655 469999999988766544333 45599999999988 2222222222222224555554
Q ss_pred -HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 280 -LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 280 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
..++.|++.+. .+.......|..|+++|+++.++.+....+|..+++.+++.+.+.. +++.
T Consensus 84 ~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~ 145 (368)
T TIGR00903 84 ACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-GLQL 145 (368)
T ss_pred HHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHH
Confidence 55788888875 4455566689999999999999999999999999999999998765 5554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-09 Score=100.51 Aligned_cols=229 Identities=15% Similarity=0.230 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHH
Q 016418 16 LPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVP 95 (390)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~ 95 (390)
+..+...+..+.....+..+- +.+ +.++ .+.|++.+.+-++..+...+..+..-|.-|-|++-++.++.+++
T Consensus 104 ~~~~~q~l~~~y~~s~IttiE-rRF--~i~S-----s~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 104 LAAFAQGLYVGYFNSVITTIE-RRF--KISS-----SQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred HHHHHHHhhhhhhhhhhhhhh-hhc--CCCC-----CcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 334444444444444444432 222 3333 44599999999999999999999999999989999999999999
Q ss_pred HHHHHhcc------------------C-----------------------c--------hhhHHHHHHHHHHhhcccchH
Q 016418 96 FTLLAFNQ------------------S-----------------------Q--------EFVYAYYVLRTISYIISQGSI 126 (390)
Q Consensus 96 ~~~~~~~~------------------~-----------------------~--------~~~~~l~~~r~l~G~~~~g~~ 126 (390)
.++.++-+ + . ..+..++++.++.|+ |....
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI-G~Tpi 254 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI-GATPI 254 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc-CCCCC
Confidence 88887620 0 0 023467788999999 76777
Q ss_pred HHHHHHHH----------------------------------------------------------------HHHHHHHH
Q 016418 127 FCIAVAYA----------------------------------------------------------------VSIALLIF 142 (390)
Q Consensus 127 ~~~~~~~i----------------------------------------------------------------~~~~~~~~ 142 (390)
++...+|+ +.+.+.++
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 78888888 44444444
Q ss_pred HHHHHHHhcccCCCCCccc----ccccccccc----cccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHH
Q 016418 143 VPVYMQFFLVETVESAPRK----DQESSGLKK----AVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISA 214 (390)
Q Consensus 143 ~~~~~~~~~~e~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (390)
..+.. +++|...++.+++ +.+..++++ +.....+..+++.+.++.+++||.+....+...+....+.++.+
T Consensus 335 ~a~p~-f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~t 413 (735)
T KOG3626|consen 335 SAVPL-FFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYIT 413 (735)
T ss_pred HHHHH-HhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHH
Confidence 44444 4455544433221 111111111 11111122345556678888999999999999999999999999
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHHH----HHHHHHHhhHH
Q 016418 215 VLLFYLKAVFGFNKNQFSEILMMVGIGSI----VSQILVLPLLN 254 (390)
Q Consensus 215 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~ 254 (390)
++|.|++.+||.++..+..+....++.+. +++|++..|+.
T Consensus 414 FlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 414 FLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred hhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence 99999999999999988888766665544 44456655543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-09 Score=95.86 Aligned_cols=141 Identities=7% Similarity=-0.012 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHH
Q 016418 195 LRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYAL 267 (390)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (390)
+..+....+...+.........|.+ ++.+|.++.+.|++.+...+... +..+++.||++||+ +..+.+++..
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 4445555555666665666667655 66679999999988766655444 45589999999998 5555556655
Q ss_pred hHhc---ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 268 FYGL---AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 268 ~~~~---~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
.... .++.+.+. ..++.|++.+...+..+.++.+..|++++++..++.+...++|..+||.+.+.+...
T Consensus 84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5432 23555554 557889999999999999999999999999999999999999999999999988643
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=101.21 Aligned_cols=141 Identities=9% Similarity=0.033 Sum_probs=111.9
Q ss_pred hhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhH
Q 016418 221 KAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVK 292 (390)
Q Consensus 221 ~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~ 292 (390)
++.+|.++...|++.....+..++ ..++++||.+|+. +..+-.++.+..++....|++. .-.+.|+|.+...
T Consensus 60 ~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~ 139 (493)
T KOG1330|consen 60 QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYS 139 (493)
T ss_pred HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhc
Confidence 456788888888776655554443 4589999999999 7777788888888888888887 5689999999999
Q ss_pred HHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhcc
Q 016418 293 PSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACML 368 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
|+.+++++|.+|.++|++++++.+....+|..+|-+.++.+.++...+++.+. ..+++.++..++.+..
T Consensus 140 ~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~-------~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 140 PIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR-------GSAVLGVIVGLLVFLF 208 (493)
T ss_pred ccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE-------eehHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988888744666553 3455555544444333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-09 Score=96.11 Aligned_cols=145 Identities=16% Similarity=0.186 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH-----HHHHHHHH-
Q 016418 195 LRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV-----ALLASIAY- 265 (390)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~- 265 (390)
.+.+.+.++..........+++|.|+++. |+|..++|...+...+...+ ..+.+.||.+|+. ......+.
T Consensus 6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~~~-g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 6 FRWLALGFFGYFCAYGIFLPFFPAWLKGI-GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34466777777788888899999999875 99999999998776665554 3467889988754 11111111
Q ss_pred HHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCC
Q 016418 266 ALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAP 343 (390)
Q Consensus 266 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~ 343 (390)
......+++.|.++ ...+.+.+.+...|...++..+. +++|++..|......++|..++|.++|.+.++. +++..
T Consensus 85 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~~~ 160 (382)
T TIGR00902 85 AAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQNI 160 (382)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-ChhHH
Confidence 22233456677665 44557777777788887776553 477899999999999999999999999999987 66653
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-09 Score=97.24 Aligned_cols=146 Identities=9% Similarity=0.018 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HH
Q 016418 210 SGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LS 281 (390)
Q Consensus 210 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~ 281 (390)
......+|.. .+.+|.+..+.+...+...+... +..+.++||++||+ +.....++.+....+++.+.++ ..
T Consensus 33 ~~~~p~l~~i-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r 111 (413)
T PRK15403 33 DLIQPGIINV-VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIAR 111 (413)
T ss_pred HhhccCHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3334444443 44568888887777665544433 45589999999999 6666666777777777776665 55
Q ss_pred HHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHH
Q 016418 282 ASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVS 361 (390)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (390)
++.|++.+...+.......|.+|+++++++.++.+....++..+||.+++.+.++. ++++ .|.+.++..+++
T Consensus 112 ~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-gw~~-------~f~~~~~~~~i~ 183 (413)
T PRK15403 112 FIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-HWKV-------LFAIIAVMGLIA 183 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHH-------HHHHHHHHHHHH
Confidence 77888877666777788899999999999999999999999999999999988765 5554 334455544444
Q ss_pred HHh
Q 016418 362 LSC 364 (390)
Q Consensus 362 ~~~ 364 (390)
.+.
T Consensus 184 ~~~ 186 (413)
T PRK15403 184 FVG 186 (413)
T ss_pred HHH
Confidence 433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=96.91 Aligned_cols=144 Identities=17% Similarity=0.148 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFY 269 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~ 269 (390)
......+.............|.+.++. |.++.+.+...+...+... +..+.+.||++||+ +.....++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDL-GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 345566677777778888888888765 8899988888766655544 45589999999998 566666666666
Q ss_pred hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 270 GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 270 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
...++.+..+ ..++.|++.+...+...++..|..|+|+|++..++.+....+|..++|.+.+.+.+.. +++.
T Consensus 82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 154 (352)
T cd06174 82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-GWRW 154 (352)
T ss_pred HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHH
Confidence 6666766665 5678889999999999999999999999999999999999999999999999999875 4444
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-09 Score=98.82 Aligned_cols=129 Identities=9% Similarity=-0.061 Sum_probs=94.7
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHH---HHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HH-HH
Q 016418 213 SAVLLFYLKAVFGFNKNQFSEILMMVGIG---SIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LS-AS 283 (390)
Q Consensus 213 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 283 (390)
..+++.+. +.+|++..+.++..+...+. .....+++.||++||+ +.+...++.+...+.++.+..+ .. ++
T Consensus 39 ~~~~~~i~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 117 (455)
T TIGR00892 39 TVFFKELQ-QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFI 117 (455)
T ss_pred hhhHHHHH-HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455444 45699999888876654432 2345589999999998 5555556666666777776664 23 56
Q ss_pred HHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 284 FGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
.|++.+...+...+.+.+.+| ++|+++.|+.+....+|..++|.+.+.+.+.. +++.+|
T Consensus 118 ~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f 176 (455)
T TIGR00892 118 TGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSF 176 (455)
T ss_pred HHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHH
Confidence 688877765666677788886 78999999999999999999999999999876 665533
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-09 Score=95.40 Aligned_cols=143 Identities=16% Similarity=0.208 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH-----HHHHH-HHHHHh
Q 016418 198 ISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV-----ALLAS-IAYALF 268 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~-~~~~~~ 268 (390)
....++....+.....+++|.|+++. |.|..++|...+...+...+ ..+.+.||.+|+. ..+.. ......
T Consensus 9 ~~~~~~~~~~~~g~~~p~l~~~l~~~-g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 87 (382)
T PRK11128 9 LALSYFGYFFAYGVFLPFWSVWLKGQ-GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAF 87 (382)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 33446666677788899999999775 99999999998877665554 3467899998743 11111 112222
Q ss_pred HhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 269 YGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 269 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
....++.|.++ ..++.+.+.+...|...++..+. +++|+++.|......++|..+||.++|.+.+++ +++..+
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f 161 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAIL 161 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHH
Confidence 33345666665 44667877777788777776665 356788888889999999999999999999987 666533
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.1e-09 Score=95.15 Aligned_cols=143 Identities=10% Similarity=-0.031 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHH-HHHHHHHHHHhhH-----HHHH-----HHHHHHHHHH
Q 016418 199 SFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGI-GSIVSQILVLPLL-----NPFV-----ALLASIAYAL 267 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~ 267 (390)
...++............+|.|++++ |++..++|++...... ..-...+.+.||+ +||+ +....+++..
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 4455666677778889999999988 9999999988544332 2224558899999 6655 3444444444
Q ss_pred hHhccc---chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 268 FYGLAW---ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 268 ~~~~~~---~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
.+.+.+ +.+.+. ..++.+.+.+...+...+++.|..|+++|+++.++.....++|..+++.+.+.+.+...+++.
T Consensus 84 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~ 162 (402)
T PRK11902 84 AMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN 162 (402)
T ss_pred HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence 444442 344444 445667777778899999999999999999999999999999999999999988874324443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.5e-10 Score=102.47 Aligned_cols=127 Identities=14% Similarity=0.026 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHh-----cccchh
Q 016418 209 MSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYG-----LAWASW 276 (390)
Q Consensus 209 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~ 276 (390)
-..+....|.+ .+.+|++..+.|++.+...+... +..|.++||+++|+ +.+..++.....+ .+++.+
T Consensus 45 r~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (467)
T PRK09556 45 RKNFKAAQNDM-ISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLG 123 (467)
T ss_pred hcChhhhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 33444555654 45579999999988766655444 45589999999998 3333333333333 345666
Q ss_pred HHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 277 VPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 277 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
.++ ..++.|++.+...|...+++.+.+|+++||+++|+.+...++|..+++.+..++.+.
T Consensus 124 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 124 LMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence 555 557889998988899999999999999999999999999999999999888776654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-08 Score=91.75 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=110.9
Q ss_pred HHHHHHHHHhhhcCCCchh-HHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HHH
Q 016418 212 ISAVLLFYLKAVFGFNKNQ-FSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LSA 282 (390)
Q Consensus 212 ~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~ 282 (390)
..++...++.+.+|++..+ .|.+.+....... +..++++||++.|+ +.+..++...+.+++++.+.+. .-+
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ 123 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEV 123 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555777688999999 8888766655444 46689999999998 5555666666777776766655 669
Q ss_pred HHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHH
Q 016418 283 SFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSL 362 (390)
Q Consensus 283 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (390)
++|++.+... ....++.+.+|+++|+++.|+.+....+|.++++++++.+. .+ +...-.. ...+......++.
T Consensus 124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~-gWr~y~~----Ln~Isl~s~~~a~ 196 (511)
T TIGR00806 124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TL-GWISYST----LNIISLVFMTFSV 196 (511)
T ss_pred HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CchhHHH----HHHHHHHHHHHHH
Confidence 9999999998 89999999999999999999999999999999999999943 33 3332111 2233444445555
Q ss_pred Hhhhccc
Q 016418 363 SCACMLD 369 (390)
Q Consensus 363 ~~~~~~~ 369 (390)
++.++++
T Consensus 197 ~~a~~LP 203 (511)
T TIGR00806 197 FLALFLK 203 (511)
T ss_pred HHHHhCC
Confidence 5555554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-08 Score=93.23 Aligned_cols=139 Identities=8% Similarity=0.006 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHH
Q 016418 195 LRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYAL 267 (390)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (390)
+..+.+..+...+.........|.+ ++.+|.++.+.|+..+...+... +..+.+.||++||+ +..+.+++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~ 106 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3445555666666667777777776 77789999999988766655444 45589999999998 5555566655
Q ss_pred hH---hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 016418 268 FY---GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLT 334 (390)
Q Consensus 268 ~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~ 334 (390)
+. ..+++.+.+. ..++.|++.+...+..+.++.+..|++++++.+++.+....+|..++|.+++.+.
T Consensus 107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3456666555 5688899999999999999988877666667899999999999999999987665
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-07 Score=80.53 Aligned_cols=310 Identities=11% Similarity=0.070 Sum_probs=158.2
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHH
Q 016418 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLIT 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~ 88 (390)
|..+.++...++...+.-+.....|.++.+.. .++ . ...+...-.-.+..+++++..|.+.||..|+++...+
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~---p~s--L--l~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~ 74 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIF---PGS--L--LPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTS 74 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCC--c--HHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHH
Confidence 55678889999999999999999999987762 112 1 2224444455677888999999999999999987777
Q ss_pred HHHHHHHHHH----HH--hcc-C-----chhhHHHHHHHHHHhhcccchHHHHHHHHH----------------------
Q 016418 89 VSTTIVPFTL----LA--FNQ-S-----QEFVYAYYVLRTISYIISQGSIFCIAVAYA---------------------- 134 (390)
Q Consensus 89 ~~~~~i~~~~----~~--~~~-~-----~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i---------------------- 134 (390)
.+..-++..+ .. +.. + ......+++.-.+.|... -.........
T Consensus 75 l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~--~Las~~~~iavERDWVvvi~~~~~~~La~~NA 152 (432)
T PF06963_consen 75 LVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE--RLASIANTIAVERDWVVVIAGGDPGALARMNA 152 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH--HHHHhhhhheeccchhhhhcCCChhhHHHHHH
Confidence 6544333222 11 111 1 111222233222323211 1111111111
Q ss_pred -------------------------------HHHHHHHHHHHHHHHh-------cccCCCCCcccccccccccc---ccc
Q 016418 135 -------------------------------VSIALLIFVPVYMQFF-------LVETVESAPRKDQESSGLKK---AVN 173 (390)
Q Consensus 135 -------------------------------~~~~~~~~~~~~~~~~-------~~e~~~~~~~~~~~~~~~~~---~~~ 173 (390)
+.+...++...+=+++ .|+-..++++++.++.++.+ +..
T Consensus 153 ~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
T PF06963_consen 153 TMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESS 232 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccccccccccccc
Confidence 1222222222221111 12211111111111110000 000
Q ss_pred ccc-------cccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---
Q 016418 174 VLD-------RRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI--- 243 (390)
Q Consensus 174 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~--- 243 (390)
+.. +.....++.|+..+++|.+.......++ ++..-.+...+..|+..+ |+++..+|.+-+...+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalL-Y~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT 310 (432)
T PF06963_consen 233 SDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALL-YFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGT 310 (432)
T ss_pred chhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHH-HHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 000 1112233446666777765554444444 334445677888899888 9999999887655544444
Q ss_pred HHHHHHHhhHHHHH----HHH----HHHHHHHhHhcccch--hHHHHHH-----HHHHHHhhhHHHHHHHHhhccCCCch
Q 016418 244 VSQILVLPLLNPFV----ALL----ASIAYALFYGLAWAS--WVPYLSA-----SFGVIYVLVKPSTYAIISKASGLNNQ 308 (390)
Q Consensus 244 ~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~--~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~ 308 (390)
....++.+|+|..+ ++. +..++...+....++ ......+ +-=+|.=..-.+..-+++|.+|+++|
T Consensus 311 ~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~R 390 (432)
T PF06963_consen 311 WVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESER 390 (432)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHh
Confidence 34344444544444 111 111222222222221 1111111 22223333445666788999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhh
Q 016418 309 GKAQGFIAGVQSISSLLSPLA 329 (390)
Q Consensus 309 g~~~g~~~~~~~~~~~~g~~~ 329 (390)
|+..|.-+..+++...+.-.+
T Consensus 391 g~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 391 GAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877755444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.6e-09 Score=96.02 Aligned_cols=114 Identities=19% Similarity=0.131 Sum_probs=82.3
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhccc----chhHHH-HH
Q 016418 214 AVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAW----ASWVPY-LS 281 (390)
Q Consensus 214 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~-~~ 281 (390)
...| ++.+. |.++.+.++..+...+... +..|.+.||++||+ +.++.++..+...+.+ +.+..+ ..
T Consensus 50 ~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
T PRK11273 50 LAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 127 (452)
T ss_pred HhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 3444 55566 9999999988776665554 35589999999998 4455555555554432 344433 45
Q ss_pred HHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhh-hhhh
Q 016418 282 ASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLL-SPLA 329 (390)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~-g~~~ 329 (390)
++.|++.+...+.....+.+.+|+++|+++.|+.+....+|..+ +|.+
T Consensus 128 ~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 176 (452)
T PRK11273 128 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF 176 (452)
T ss_pred HHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 67788888888877788889999999999999999998888654 4544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-07 Score=81.28 Aligned_cols=266 Identities=14% Similarity=0.076 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 55 GLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 55 g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
.-+.-...-.++...++...+.|..|.|++++.+.+...+...+..+.++ .+.+-+..+..|+ +.+. ..+..+|+
T Consensus 44 ~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s---v~~mq~~q~~yg~-~~a~-evay~sYi 118 (412)
T PF01770_consen 44 NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS---VLAMQLMQFFYGL-ATAA-EVAYYSYI 118 (412)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc---HHHHHHHHHHHHH-HHHH-HHHHHHHh
Confidence 34445555566777788889999999999999999999999999999999 9999999999999 4233 34566666
Q ss_pred ----------------------------------------------HHHHHHHHHHHHHHHhcccCCCCC---cccc---
Q 016418 135 ----------------------------------------------VSIALLIFVPVYMQFFLVETVESA---PRKD--- 162 (390)
Q Consensus 135 ----------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~---~~~~--- 162 (390)
..........++..+++|.+++.. ++.+
T Consensus 119 ys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~ 198 (412)
T PF01770_consen 119 YSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQ 198 (412)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCcccc
Confidence 222233333344445677654321 1000
Q ss_pred ------ccccccccc----c-cccc----ccccc---HHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhh-
Q 016418 163 ------QESSGLKKA----V-NVLD----RRYKS---MRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAV- 223 (390)
Q Consensus 163 ------~~~~~~~~~----~-~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (390)
.++.++..+ . +.+. +.... +.+.++...++|.++...+-..+...++..+.++.....++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~ 278 (412)
T PF01770_consen 199 DANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVP 278 (412)
T ss_pred ccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 000000000 0 0000 11111 222344455789888888888888888777777777666554
Q ss_pred -cCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH------HHHHHHHHHHhHhcccchhHHHHH-HHHHHHHhhhH
Q 016418 224 -FGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV------ALLASIAYALFYGLAWASWVPYLS-ASFGVIYVLVK 292 (390)
Q Consensus 224 -~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~ 292 (390)
-+-+....|.+-+...+.+. +..+.+..++.+.. ..++.+..++++...++.|..+.. ++++.......
T Consensus 279 ~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fli 358 (412)
T PF01770_consen 279 PSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLI 358 (412)
T ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 11122234555444443333 34455544444433 233344456667777788887744 56677777777
Q ss_pred HHHHHHHhhccCCCchhhHHHHHHHHHHHHHhh
Q 016418 293 PSTYAIISKASGLNNQGKAQGFIAGVQSISSLL 325 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 325 (390)
+....-+++....|.-|.++|+++.+.-+-+.+
T Consensus 359 TiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 359 TIASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred HHHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 888888888888888899999988776655553
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-08 Score=94.65 Aligned_cols=171 Identities=9% Similarity=-0.041 Sum_probs=118.9
Q ss_pred cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHH-HHHHHHHHHHhhH-----HHHH-----HH
Q 016418 191 SSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGI-GSIVSQILVLPLL-----NPFV-----AL 259 (390)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-----~~~~-----~~ 259 (390)
++|+...+....+............+|.++++. |.+..+++.+...... ..-+..+.+.||+ |||+ +.
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~ 88 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAWMTVE-NIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQ 88 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHH
Confidence 356667777777777888888888999999887 9999888886322222 3334558899998 8776 33
Q ss_pred HHHHHHHHhHhcc---cchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 260 LASIAYALFYGLA---WASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 260 ~~~~~~~~~~~~~---~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+..+++...+++. ++.+.+. ..++.+++.+...+...++..|.+|+++|+++.++......+|..+++.+.+.+.+
T Consensus 89 i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~ 168 (491)
T PRK11010 89 LLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD 168 (491)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333343444343 2344443 55677888888888889999999999999999999999999999999999999987
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHhhhccc
Q 016418 336 WFLSTDAPFNCKGFSIIVASICLMVSLSCACMLD 369 (390)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (390)
...+++. .|.+.+++.++..+..+..+
T Consensus 169 ~~~GWr~-------~f~i~a~l~ll~~l~~~~~~ 195 (491)
T PRK11010 169 RYLGWQG-------MYWLMAALLIPCIIATLLAP 195 (491)
T ss_pred cccCHHH-------HHHHHHHHHHHHHHHHHhcC
Confidence 3214544 33445544444444433333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=105.97 Aligned_cols=149 Identities=11% Similarity=0.035 Sum_probs=100.1
Q ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHH----hhhcCCCc-hhHHHHHHHHHH---HHHHHHHHHHhhHHHHHH--
Q 016418 189 VVSSPTLRGISFVSFFYKLGMSGISAVLLFYL----KAVFGFNK-NQFSEILMMVGI---GSIVSQILVLPLLNPFVA-- 258 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~-~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~-- 258 (390)
++++++++.++...++..+..+.....++.+. .+..+.+. ...++..++..+ ......|.++||++||+.
T Consensus 7 l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~ 86 (1140)
T PRK06814 7 LMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAK 86 (1140)
T ss_pred hhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHH
Confidence 45677788887777777766554433333222 22212221 234444433333 333455899999999871
Q ss_pred ----H-HHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhh
Q 016418 259 ----L-LASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSP 332 (390)
Q Consensus 259 ----~-~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~ 332 (390)
. +............++.|.++ ..++.|++.+...|...+++.+.+|++++++++|+.++..++|..+||.++|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~ 166 (1140)
T PRK06814 87 ILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGL 166 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111112235666665 66888999999999999999999999999999999999999999999999999
Q ss_pred hhccc
Q 016418 333 LTSWF 337 (390)
Q Consensus 333 l~~~~ 337 (390)
+.+..
T Consensus 167 l~~~~ 171 (1140)
T PRK06814 167 ATISG 171 (1140)
T ss_pred HHhcc
Confidence 99865
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-09 Score=99.11 Aligned_cols=122 Identities=14% Similarity=-0.002 Sum_probs=92.9
Q ss_pred hcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhHhcc--cchhHHH-HHHHHHHHHhhhH
Q 016418 223 VFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFYGLA--WASWVPY-LSASFGVIYVLVK 292 (390)
Q Consensus 223 ~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~-~~~~~g~~~~~~~ 292 (390)
.++++..+.|.+.+...+...+ ..+.+.||+++|+ +.++..+..++.... .+.+..+ ..++.|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 5688888888887766555553 4589999999998 444444444333222 3344444 5688899999999
Q ss_pred HHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 293 PSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
|....++.|..|+++|+++.|+.+....+|..++|.+.+.+.+...+++.++
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f 201 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIF 201 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeh
Confidence 9999999999999999999999999999999999999999987622555544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-09 Score=101.24 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=97.1
Q ss_pred hHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH---HHHHHHHHhhHHHHH----HHHHHHHHHHhHhccc----------
Q 016418 211 GISAVLLFYLKAVFGFNKNQFSEILMMVGIGS---IVSQILVLPLLNPFV----ALLASIAYALFYGLAW---------- 273 (390)
Q Consensus 211 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---------- 273 (390)
++....-.-++++++++..+.|++.+...+.. .+..+++.||.+|++ +.++.+++.+++++++
T Consensus 50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~ 129 (633)
T TIGR00805 50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYST 129 (633)
T ss_pred HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence 33333334556778999999888765544443 345578999999888 7777777776665542
Q ss_pred ---------------------------------------c-hh-HHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhH
Q 016418 274 ---------------------------------------A-SW-VPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKA 311 (390)
Q Consensus 274 ---------------------------------------~-~~-~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 311 (390)
+ .+ .++ ..++.|++.+...+...+++.|.+|+++|++.
T Consensus 130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~ 209 (633)
T TIGR00805 130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY 209 (633)
T ss_pred cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence 1 12 222 55888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 312 QGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 312 ~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
.|+.+....+|..+|+.++|.+.+.+
T Consensus 210 ~~i~~~~~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 210 IGILESIAVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 99999999999999999999988754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-08 Score=89.77 Aligned_cols=126 Identities=10% Similarity=-0.050 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH--HHHHHHHHhhH-----HHHH-----HHHHHHHHHHhHhccc---c
Q 016418 210 SGISAVLLFYLKAVFGFNKNQFSEILMMVGIGS--IVSQILVLPLL-----NPFV-----ALLASIAYALFYGLAW---A 274 (390)
Q Consensus 210 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~--~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~---~ 274 (390)
.......|.+.+|. |+|..+.|+.... ++.. ....+.+.||+ |||+ +.+..++......+.. +
T Consensus 5 ~~~~~~~~~~~~~~-g~s~~~~g~~~~~-~~~~~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSK-NVSLKTIGFFSLV-GLPYSLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHc-CCCHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 34456677777765 9999999988633 2221 34558899998 6766 2333334433444442 2
Q ss_pred hhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 275 SWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 275 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
.+... ..++.+.+.+...+...+++.|..|+|+|+++.|+......+|..+++.+++.+.+..
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~ 146 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE 146 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333 3455667777788899999999999999999999999999999999999999998876
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.3e-09 Score=96.15 Aligned_cols=103 Identities=10% Similarity=-0.020 Sum_probs=79.2
Q ss_pred chhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccc---hhHHH-HHHHHHHHHhhhHHHHH
Q 016418 228 KNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWA---SWVPY-LSASFGVIYVLVKPSTY 296 (390)
Q Consensus 228 ~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~-~~~~~g~~~~~~~~~~~ 296 (390)
..+.+++.+...+... +..+.+.||++||+ +.++..++.++.....+ .+.++ ..++.|++.+...+...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 149 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP 149 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence 6778887766655444 45589999999998 44444445444433322 22343 56888999999999999
Q ss_pred HHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhh
Q 016418 297 AIISKASGLNNQGKAQGFIAGVQSISSLLSPLAM 330 (390)
Q Consensus 297 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~ 330 (390)
+++.|..|+++|+++.++.+....+|..+++.+.
T Consensus 150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-08 Score=103.24 Aligned_cols=148 Identities=12% Similarity=0.134 Sum_probs=104.2
Q ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCch--hHHHHHHHHHH---HHHHHHHHHHhhHHHHH----HH
Q 016418 189 VVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKN--QFSEILMMVGI---GSIVSQILVLPLLNPFV----AL 259 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~g~~~~~~~~---~~~~~~~~~~~~~~~~~----~~ 259 (390)
.++++.++.++...++..+........+..++...++.+.. ..+++.++..+ ...+..|.++||++||+ +.
T Consensus 5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~ 84 (1146)
T PRK08633 5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK 84 (1146)
T ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence 34577777777777777766666555665556555555433 24544444333 33345589999999998 22
Q ss_pred HHHHHHHH---hHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 260 LASIAYAL---FYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 260 ~~~~~~~~---~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
++..+..+ +....++.+.++ ..++.|++.+...+...+++.|.+|+++|++++|+.+....+|..+||.+++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 222234555554 55788999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 016418 336 W 336 (390)
Q Consensus 336 ~ 336 (390)
.
T Consensus 165 ~ 165 (1146)
T PRK08633 165 S 165 (1146)
T ss_pred h
Confidence 5
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=77.02 Aligned_cols=103 Identities=15% Similarity=0.066 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHH
Q 016418 239 GIGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQG 313 (390)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g 313 (390)
.+......+++.||.+||+ +.....++.+.....++.+... ..++.+++.+...+...++..|..|+++|+++.+
T Consensus 11 ~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (141)
T TIGR00880 11 QLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALG 90 (141)
T ss_pred HHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHH
Confidence 3444555678899999988 4444445555555556665554 5578888888888999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 314 FIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 314 ~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
+.+....++..++|.+.+.+.+.. +++.
T Consensus 91 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 118 (141)
T TIGR00880 91 LMSAGIALGPLLGPPLGGVLAQFL-GWRA 118 (141)
T ss_pred HHHHhHHHHHHHhHHhHHHHhccc-chHH
Confidence 999999999999999999998765 4433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-08 Score=90.68 Aligned_cols=138 Identities=10% Similarity=-0.118 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhc--CCCchhHHHHHHH--H------HHHHHHHHHHHHhhHHHHH----HHHHH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVF--GFNKNQFSEILMM--V------GIGSIVSQILVLPLLNPFV----ALLAS 262 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~g~~~~~--~------~~~~~~~~~~~~~~~~~~~----~~~~~ 262 (390)
...+..++...-........|.+..+.+ +.++. .+...+. . ...+.+..|.+.||+|||+ +....
T Consensus 26 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~ 104 (438)
T PRK09952 26 GSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMM 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3334444444444444444454555443 55555 3443211 1 1223345589999999999 66666
Q ss_pred HHHHHhHhcccchh--------HHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh
Q 016418 263 IAYALFYGLAWASW--------VPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPL 333 (390)
Q Consensus 263 ~~~~~~~~~~~~~~--------~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l 333 (390)
+++.++.++.++.+ .++ ..++.|++.+...+....++.|..|+++||+..+..+....+|..+++.+.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l 184 (438)
T PRK09952 105 GIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI 184 (438)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777887754 232 457889999999999999999999999999999999888888888887777666
Q ss_pred hc
Q 016418 334 TS 335 (390)
Q Consensus 334 ~~ 335 (390)
..
T Consensus 185 ~~ 186 (438)
T PRK09952 185 SM 186 (438)
T ss_pred HH
Confidence 54
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-08 Score=88.75 Aligned_cols=173 Identities=13% Similarity=0.038 Sum_probs=116.3
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHH---HHHHh----hHHHHH-----HHHH
Q 016418 194 TLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQ---ILVLP----LLNPFV-----ALLA 261 (390)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~---~~~~~----~~~~~~-----~~~~ 261 (390)
++..+....+..++.+.....+.++|+++ +|.++...+.+..+..+.+.+.+ |.++| |+|||+ +...
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 34455666677788888888999998865 59999999998877777666544 88999 599999 3444
Q ss_pred HHHHHHhHhcccchh-----------------HHH-HHHHHHHHHhhhHHHHHHHHhhccCCCch--hhHHHHHHHHHHH
Q 016418 262 SIAYALFYGLAWASW-----------------VPY-LSASFGVIYVLVKPSTYAIISKASGLNNQ--GKAQGFIAGVQSI 321 (390)
Q Consensus 262 ~~~~~~~~~~~~~~~-----------------~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~~ 321 (390)
..+++.++++.++.+ ... ...+..++.....+...+++.|.+|+++| +.+.++.+...++
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHH
Confidence 555555665544321 111 22344556677777889999999998865 6899999999999
Q ss_pred HHhhhhhhhhhh--hcccccCC--CCCC----CCchHHHHHHHHHHHHHHhhhcc
Q 016418 322 SSLLSPLAMSPL--TSWFLSTD--APFN----CKGFSIIVASICLMVSLSCACML 368 (390)
Q Consensus 322 ~~~~g~~~~g~l--~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
|+.+|+.+++.. .+.+ +.. .... .....|.+.+++.+++..+....
T Consensus 164 G~ilg~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~ 217 (477)
T TIGR01301 164 GNVLGYAAGAYSGLYKIF-PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSA 217 (477)
T ss_pred HHHHHHHHHHHHhHHHhc-ccccccccccccchHHHHHHHHHHHHHHHHHHHeee
Confidence 999999998875 2221 110 0000 11125666776666666655443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-08 Score=89.50 Aligned_cols=94 Identities=10% Similarity=-0.183 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchh--------HHH-HHHHHHHHHhhhHHHHHHHHhhccCCCc
Q 016418 241 GSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASW--------VPY-LSASFGVIYVLVKPSTYAIISKASGLNN 307 (390)
Q Consensus 241 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 307 (390)
.+.+..|+++||+|||+ +....+++.+..++.++.. .++ ..++.|++.+...|...+++.|..|+++
T Consensus 78 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 34456689999999999 5566666666666666542 222 5578899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 016418 308 QGKAQGFIAGVQSISSLLSPLAMSPLT 334 (390)
Q Consensus 308 ~g~~~g~~~~~~~~~~~~g~~~~g~l~ 334 (390)
||+..++.......|..+++.+...+.
T Consensus 158 rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 158 KGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888877788787777655443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.1e-08 Score=90.66 Aligned_cols=139 Identities=9% Similarity=0.001 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHH-HHH----HH----HHHHHHHHHHhhHHHHH----HHHH
Q 016418 195 LRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEIL-MMV----GI----GSIVSQILVLPLLNPFV----ALLA 261 (390)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~-~~~----~~----~~~~~~~~~~~~~~~~~----~~~~ 261 (390)
.....+..++...-...+....|...+ .++.++.+.+... +.. +. .+.+..+.+.||++||+ +...
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAK-TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 444566666666666666767775555 4577776544332 111 11 23345589999999999 6666
Q ss_pred HHHHHHhHhcccchhH---------HHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhh
Q 016418 262 SIAYALFYGLAWASWV---------PYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSP 332 (390)
Q Consensus 262 ~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~ 332 (390)
..++.....+.++.+. ....++.|++.+...+....++.|.+|+++|+++.++.+...+++..+++.+++.
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777553 2245788888888888888999999999999999999999988888888888777
Q ss_pred hh
Q 016418 333 LT 334 (390)
Q Consensus 333 l~ 334 (390)
+.
T Consensus 176 l~ 177 (434)
T PRK15075 176 LN 177 (434)
T ss_pred HH
Confidence 64
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=90.39 Aligned_cols=173 Identities=15% Similarity=0.139 Sum_probs=133.6
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcC----CCchhHHHHHHHHH-HH--HHHHHHHHHhh-HHHHH----HH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFG----FNKNQFSEILMMVG-IG--SIVSQILVLPL-LNPFV----AL 259 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~g~~~~~~~-~~--~~~~~~~~~~~-~~~~~----~~ 259 (390)
.|.++.+...-+.--+++++....+..|+...++ +|.+++.-+++..+ .+ ..+.+|+++|| +|+|+ +.
T Consensus 20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 5567778888889999999999999999988777 88877655554433 22 23577999999 57777 77
Q ss_pred HHHHHHHHhHhccc--chhHH-HHHHHHHHHHhhhHHHHHHHHhhccCCC--chhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 016418 260 LASIAYALFYGLAW--ASWVP-YLSASFGVIYVLVKPSTYAIISKASGLN--NQGKAQGFIAGVQSISSLLSPLAMSPLT 334 (390)
Q Consensus 260 ~~~~~~~~~~~~~~--~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~~~~~g~~~~g~l~ 334 (390)
++..++.++++..+ ....+ +...+..+|.|..-|...+++.|.+|++ +|-..+++.....++|+.++|.+.+++.
T Consensus 100 il~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~ 179 (498)
T COG3104 100 ILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA 179 (498)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH
Confidence 77888888888774 33333 3556778999999999999999999865 3677888888999999999999999999
Q ss_pred cccccCCCCCCCCchHHHHHHHHHHHHHHhhhcccccc
Q 016418 335 SWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTEE 372 (390)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
++. +++. .|..+++-+..+++.++..+++.
T Consensus 180 ~~~-g~~~-------gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 180 INY-GWHV-------GFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred Hhh-CHHH-------HHHHHHHHHHHHHHHHHHccchh
Confidence 987 6555 44667777777777777666543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.5e-08 Score=89.96 Aligned_cols=109 Identities=12% Similarity=-0.033 Sum_probs=80.8
Q ss_pred CchhHHHHHHHHH---HHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccc------hhHHH-HHHHHHHHHhhhH
Q 016418 227 NKNQFSEILMMVG---IGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWA------SWVPY-LSASFGVIYVLVK 292 (390)
Q Consensus 227 ~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~-~~~~~g~~~~~~~ 292 (390)
+..+.+++.+... +.+.+..+++.||+|||+ +.++..++.++.....+ .+.++ ..++.|++.+...
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 133 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY 133 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence 3444455544443 344456689999999998 44445555555454433 33333 5578899999999
Q ss_pred HHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 293 PSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+....+++|.+|+++||++.++.+....+|..+++.+...+..
T Consensus 134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~ 176 (502)
T TIGR00887 134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLA 176 (502)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988876643
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=89.19 Aligned_cols=93 Identities=6% Similarity=-0.112 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhH--------H-HHHHHHHHHHhhhHHHHHHHHhhccCCCch
Q 016418 242 SIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWV--------P-YLSASFGVIYVLVKPSTYAIISKASGLNNQ 308 (390)
Q Consensus 242 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 308 (390)
+.+..|.++||+|||+ +.++.+++.++.++.++.+. + ..-++.|++.+...+...+++.|..|+++|
T Consensus 73 g~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~R 152 (490)
T PRK10642 73 GGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKR 152 (490)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCC
Confidence 4455589999999999 77777778888888887643 2 255788999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhh
Q 016418 309 GKAQGFIAGVQSISSLLSPLAMSPLT 334 (390)
Q Consensus 309 g~~~g~~~~~~~~~~~~g~~~~g~l~ 334 (390)
|+..++......+|..+|+.+...+.
T Consensus 153 g~~~~~~~~~~~~G~~lg~~~~~~~~ 178 (490)
T PRK10642 153 GFMGSWLDFGSIAGFVLGAGVVVLIS 178 (490)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888887776665543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-07 Score=86.41 Aligned_cols=119 Identities=9% Similarity=0.064 Sum_probs=86.1
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHHH--HHHHHHHhhHHHHH----HHHHHHHHHHhHhcc------cchhHHH-HH
Q 016418 215 VLLFYLKAVFGFNKNQFSEILMMVGIGSI--VSQILVLPLLNPFV----ALLASIAYALFYGLA------WASWVPY-LS 281 (390)
Q Consensus 215 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~-~~ 281 (390)
.....+++.+|+|..+.+.+.+.....+. +..|++.||+++|. +.+...++.++.+++ .+.+.+. ..
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r 127 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYN 127 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 33345677789999998887655332222 24589999999999 666666676666665 3556554 55
Q ss_pred HHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 016418 282 ASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLT 334 (390)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~ 334 (390)
++.|.+.+...+.....+.+.+| ++||++.|+......+|.++.+.+...++
T Consensus 128 ~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 128 GLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888887 78999999999999999986444444443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.8e-08 Score=87.21 Aligned_cols=125 Identities=14% Similarity=0.043 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HH
Q 016418 210 SGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LS 281 (390)
Q Consensus 210 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~ 281 (390)
......+|.+.+ .+|+++.+.++..+...+... +..+.+.||++||+ +.....++.+.. ..++.+.++ ..
T Consensus 17 ~~~~~~lp~l~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 94 (355)
T TIGR00896 17 TSVGPLLPQIRS-ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT 94 (355)
T ss_pred ccCcccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 334556666555 559999999998766655554 45589999999998 444444444444 445555544 55
Q ss_pred HHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 282 ASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
++.|++.+...+.......|..| ++|+++.|+.+....+|..+++.+.+.+.+..
T Consensus 95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 149 (355)
T TIGR00896 95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS 149 (355)
T ss_pred HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67788888777777778888876 68999999999999999999999999888754
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.8e-08 Score=90.11 Aligned_cols=110 Identities=12% Similarity=-0.108 Sum_probs=81.0
Q ss_pred CCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhcc---------cc---hhHHH-HHHHH
Q 016418 225 GFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLA---------WA---SWVPY-LSASF 284 (390)
Q Consensus 225 g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------~~---~~~~~-~~~~~ 284 (390)
+.++.+.++..+...++.. +..+.+.||++||+ +.....++.+..... ++ .+.++ ..++.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~ 130 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG 130 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence 7777888887765554444 45589999999999 333333343333321 12 12222 45888
Q ss_pred HHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 016418 285 GVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLT 334 (390)
Q Consensus 285 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~ 334 (390)
|++.+...+...+++.|.+|+++||+++|+.+....+|..+++.+.+.+.
T Consensus 131 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 180 (479)
T PRK10077 131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA 180 (479)
T ss_pred hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998887766554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.4e-08 Score=85.56 Aligned_cols=123 Identities=14% Similarity=0.105 Sum_probs=90.6
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhHhcccch---hHHH-HH
Q 016418 213 SAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFYGLAWAS---WVPY-LS 281 (390)
Q Consensus 213 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~-~~ 281 (390)
...+...+++.+|+|+.|.+++.++..+.+.+ .-+++.||+|.|+ +.++..+-.+...++.+. |.++ ..
T Consensus 33 ~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~g 112 (417)
T COG2223 33 FSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIG 112 (417)
T ss_pred HHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence 33344455688899999999998887777764 4488999999888 555555555555555443 3555 33
Q ss_pred HHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 282 ASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
.+.|++ |..+......+++.+|+|++|.+.|++. ..|+|..+...+...+....
T Consensus 113 ll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~ 166 (417)
T COG2223 113 LLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF 166 (417)
T ss_pred HHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence 444443 4456777889999999999999999998 88999888888888887766
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=86.07 Aligned_cols=100 Identities=13% Similarity=0.013 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHHH-HHHHHHHHhhhHHHHHHHHhhccCCCchh
Q 016418 235 LMMVGIGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPYL-SASFGVIYVLVKPSTYAIISKASGLNNQG 309 (390)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 309 (390)
+++....+....|-++|+.|||. +.+..++.+++++.+.+...++. -++.|+..+-. ....++++|.+++|+|+
T Consensus 77 F~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~r~ 155 (451)
T KOG2615|consen 77 FSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKYRP 155 (451)
T ss_pred HHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhhcc
Confidence 34444444455588999999999 66667777888888888744444 56777776655 44689999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 310 KAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 310 ~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
.+++..++..++|..+||.++|++.+
T Consensus 156 l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 156 LGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ceeeeeehhhhcchhhcchhhhHHHh
Confidence 99999999999999999999999988
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-08 Score=87.49 Aligned_cols=144 Identities=16% Similarity=0.154 Sum_probs=96.7
Q ss_pred cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHH---HHHHHhhHHHHH-HH-HHHH--
Q 016418 191 SSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVS---QILVLPLLNPFV-AL-LASI-- 263 (390)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~-~~-~~~~-- 263 (390)
||+.++.+....++..+.+....++++.++++..|+++.++|.++++..+...+. .|.+.||++.|+ -+ .+..
T Consensus 5 ~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~ 84 (412)
T PF01306_consen 5 KNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILL 84 (412)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHH
Confidence 4778899999999999999999999999999877999999999999888777763 478899998666 11 1111
Q ss_pred ---HHHHhHhcc----cchhHHH--HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 016418 264 ---AYALFYGLA----WASWVPY--LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLT 334 (390)
Q Consensus 264 ---~~~~~~~~~----~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~ 334 (390)
..+..+.+. .+.+... ....+++......|..-++..+.. ++.+--+|=....+++|.+++..++|.++
T Consensus 85 ~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~ 162 (412)
T PF01306_consen 85 LLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILF 162 (412)
T ss_dssp HTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheee
Confidence 111111111 1222111 112334445556677666665554 34556677788899999999999999999
Q ss_pred cc
Q 016418 335 SW 336 (390)
Q Consensus 335 ~~ 336 (390)
+.
T Consensus 163 ~i 164 (412)
T PF01306_consen 163 NI 164 (412)
T ss_dssp HH
T ss_pred ee
Confidence 85
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=87.73 Aligned_cols=135 Identities=14% Similarity=0.193 Sum_probs=94.8
Q ss_pred HHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhh----HHHHH-----HHHHHHHHHHhHh
Q 016418 203 FFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPL----LNPFV-----ALLASIAYALFYG 270 (390)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~----~~~~~-----~~~~~~~~~~~~~ 270 (390)
+...........+++.|+.+.+|.++.+.|.+.++..+...+ ..|.++|| +|||+ +....+++.+.+.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 344556667778889999999999999999999877776664 44889998 45544 4444444454444
Q ss_pred cccch------hHH-HHHHHHHHHHhhhHHHHHHHHhhcc-CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 271 LAWAS------WVP-YLSASFGVIYVLVKPSTYAIISKAS-GLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 271 ~~~~~------~~~-~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
..++. +.. ...++.+.+.+...+...++..+.. ++++|++..+..+....+|..+++.+.+.+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~ 163 (437)
T TIGR00792 89 TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYF 163 (437)
T ss_pred hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44321 111 1335566667766667778888876 4688999999999998998888888777776544
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-07 Score=83.71 Aligned_cols=92 Identities=13% Similarity=-0.062 Sum_probs=73.1
Q ss_pred HHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhH--------HH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhh
Q 016418 244 VSQILVLPLLNPFV----ALLASIAYALFYGLAWASWV--------PY-LSASFGVIYVLVKPSTYAIISKASGLNNQGK 310 (390)
Q Consensus 244 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (390)
+..+.+.||++||+ +.+...++.+...+.++.+. .+ ..++.|++.+...+...+++.|..|+++|++
T Consensus 53 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~ 132 (394)
T TIGR00883 53 IVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGF 132 (394)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchH
Confidence 45589999999999 55566666666666665431 22 4467788888888888999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 311 AQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 311 ~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
..+..+....+|..+++.+.+.+..
T Consensus 133 ~~~~~~~~~~~G~~i~~~~~~~~~~ 157 (394)
T TIGR00883 133 YGSFQQVGAPVGLLLAALTVLLLSY 157 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776654
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-05 Score=71.72 Aligned_cols=272 Identities=15% Similarity=0.118 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 55 GLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 55 g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
|.+.-+-.++.++..+.+-++.+|...+.-.....++..++.++.+++++ .+.-+++-.+.++ +.|..-..-.++.
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~---v~~~l~Gv~las~-ssg~GE~tfL~lt 137 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS---VWVRLLGVVLASL-SSGLGEVTFLSLT 137 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc---hhHHHHHHHHHhh-hhhhhHHHHHHHH
Confidence 55666677788888888888899988766666677788889999999998 8877888888887 4344433333433
Q ss_pred -----------------------------------------HHHHHHHHHHHHHHHhcccCCCCCccccccc---cccc-
Q 016418 135 -----------------------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQES---SGLK- 169 (390)
Q Consensus 135 -----------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~~~- 169 (390)
....++++..+..++.+|+++.+++.++.+. .+++
T Consensus 138 ~~y~~~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~~~~~ 217 (402)
T PF02487_consen 138 HFYGKSSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEAEDDL 217 (402)
T ss_pred HhcCccccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCcccccc
Confidence 2233333333333445554332221111100 0000
Q ss_pred cc-----ccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHH--hhhcCCCchhHHHHHHHHHHHH
Q 016418 170 KA-----VNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYL--KAVFGFNKNQFSEILMMVGIGS 242 (390)
Q Consensus 170 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~g~~~~~~~~~~ 242 (390)
.. .++....+.+.++.++.+ |.+...++-.++.+++.+..+.-...-+ .....-...+..+......++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~k~~~~---k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~GV 294 (402)
T PF02487_consen 218 LESETSESKPDSSSKLSFKEKLKRL---KPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLGV 294 (402)
T ss_pred cccccccccccccchhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHHH
Confidence 00 000111122333333322 3333344444444445444433322222 1221111223334444444433
Q ss_pred HHHHHHH-HhhHHHHH-HHHHHHH------HHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHH
Q 016418 243 IVSQILV-LPLLNPFV-ALLASIA------YALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQG 313 (390)
Q Consensus 243 ~~~~~~~-~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g 313 (390)
.+..... .=|+.+.. -.++..+ .-..+-+.++.|... ..+..|+..|..+......+.+..|+++|--++|
T Consensus 295 FISRSS~~~~rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg 374 (402)
T PF02487_consen 295 FISRSSLPFFRIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLG 374 (402)
T ss_pred hhhhcceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3321110 00222222 1111111 111223345666665 6677789899988888888898899999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhh
Q 016418 314 FIAGVQSISSLLSPLAMSPL 333 (390)
Q Consensus 314 ~~~~~~~~~~~~g~~~~g~l 333 (390)
......+.|..++..++-++
T Consensus 375 ~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 375 AVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 99999988888776664433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-06 Score=76.53 Aligned_cols=133 Identities=15% Similarity=0.034 Sum_probs=101.8
Q ss_pred HHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHH---HHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhccc---
Q 016418 204 FYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVG---IGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAW--- 273 (390)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--- 273 (390)
+.+......+..+-+.+++.++.+..+.+++....- ....+..+++.+|++.|. ++.+.+++..++.-+.
T Consensus 23 fl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~ 102 (422)
T COG0738 23 FLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102 (422)
T ss_pred HHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 333344455666667888889999999888754332 233345589999999998 7777777777665333
Q ss_pred chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 274 ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 274 ~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
++..+. ..++.+.|.+...+..+.++....|++...+-+.+.+.++.+|..++|.+++.+..+
T Consensus 103 ~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred hHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 233333 447888899999999999999999998889999999999999999999999999884
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-07 Score=75.70 Aligned_cols=257 Identities=16% Similarity=0.052 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 55 GLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 55 g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
|.+.-...-...+...+.|.++|+-|||+.-+.-++.+.+++ +.-.+++ +-.++++|.+-|+ +.....+.-.++.
T Consensus 75 gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpq---YkVLmVGR~LGGi-aTsLLFSaFEsWl 149 (454)
T KOG4332|consen 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQ---YKVLMVGRVLGGI-ATSLLFSAFESWL 149 (454)
T ss_pred ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCc---eEEEeehhhhhhH-HHHHHHHHHHHHH
Confidence 555566666677788889999999999997655555444443 2345667 8889999999999 5455555555544
Q ss_pred ----------------------------HHHHHHHHHH--HHHHHhcccCCCCCccccc----------ccccccccccc
Q 016418 135 ----------------------------VSIALLIFVP--VYMQFFLVETVESAPRKDQ----------ESSGLKKAVNV 174 (390)
Q Consensus 135 ----------------------------~~~~~~~~~~--~~~~~~~~e~~~~~~~~~~----------~~~~~~~~~~~ 174 (390)
+.+++..+.. +.-++-+-...+.+..... .-.++..+..+
T Consensus 150 iaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~ 229 (454)
T KOG4332|consen 150 IAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSE 229 (454)
T ss_pred HHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhh
Confidence 2222221111 1111111100000000000 00000000000
Q ss_pred cccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCch--hHHHHHHHHHHHHHHHHHHHHhh
Q 016418 175 LDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKN--QFSEILMMVGIGSIVSQILVLPL 252 (390)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~ 252 (390)
.+.-....+...+.+..++++..+-....++-...+.+...+.+-+ .-++. --|.+++.....+++.+...++.
T Consensus 230 ~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaL----spn~e~iPhGfiFatFMlASmLGSSla~Rl 305 (454)
T KOG4332|consen 230 NKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL----SPNDEEIPHGFIFATFMLASMLGSSLASRL 305 (454)
T ss_pred hHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccC----CCCcccCCchhHHHHHHHHHHHhhHHHHHH
Confidence 0111123334445556666665554444444333333322222222 21122 24777777777777765554454
Q ss_pred HHHHH---------HHHHHHHHHHhHhcc----cc---h-hHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHH
Q 016418 253 LNPFV---------ALLASIAYALFYGLA----WA---S-WVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFI 315 (390)
Q Consensus 253 ~~~~~---------~~~~~~~~~~~~~~~----~~---~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 315 (390)
..|+. .++..+..+.+.... ++ + ..++...++-.+.|..+|..+-+-++..|++.|++.+-++
T Consensus 306 ~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfF 385 (454)
T KOG4332|consen 306 LSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFF 385 (454)
T ss_pred HhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhe
Confidence 44443 223332222222111 11 1 1223445667888999999999999999999998887766
Q ss_pred HHHHH
Q 016418 316 AGVQS 320 (390)
Q Consensus 316 ~~~~~ 320 (390)
..--+
T Consensus 386 RvPLn 390 (454)
T KOG4332|consen 386 RVPLN 390 (454)
T ss_pred echhh
Confidence 54443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.7e-08 Score=90.42 Aligned_cols=116 Identities=8% Similarity=-0.054 Sum_probs=91.2
Q ss_pred HhhhcCCC---chhHHHHHHHHHHHH---HHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HHHHHHHHH
Q 016418 220 LKAVFGFN---KNQFSEILMMVGIGS---IVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LSASFGVIY 288 (390)
Q Consensus 220 ~~~~~g~~---~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~ 288 (390)
+.++++++ +.+.++..+...++. .+..+.++||+|||+ +.+...++.+...++++.+.++ ..++.|++.
T Consensus 115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~ 194 (505)
T TIGR00898 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGI 194 (505)
T ss_pred EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Confidence 34556887 667777665544443 346689999999998 5555666666777778877766 568889999
Q ss_pred hhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 289 VLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+...+...+++.|.+|+++|+++.++......+|..++|.+++.+.+
T Consensus 195 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (505)
T TIGR00898 195 GGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD 241 (505)
T ss_pred cchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999988889999999888766654
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.1e-07 Score=81.48 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHH-HH----HHHHHHHHHHh
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNP-FV----ALLASIAYALF 268 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~-~~----~~~~~~~~~~~ 268 (390)
.+....++.+..+....+.++.+++++.|.+..+.|++.+...+...+ ..+.+.||.+| |+ +.+...+....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 356677778888888889999999988899999999998777766654 44889999855 44 34444455555
Q ss_pred HhcccchhHHH-HHHHHHHHHhhhHHHHHHHH----h----hccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh
Q 016418 269 YGLAWASWVPY-LSASFGVIYVLVKPSTYAII----S----KASGLNNQGKAQGFIAGVQSISSLLSPLAMSPL 333 (390)
Q Consensus 269 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~----~----~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l 333 (390)
..+.++.+... ..++.+++.+...+...+.. . |......|.+..| .+|..+||.++|.+
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l 153 (418)
T TIGR00889 86 AAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL 153 (418)
T ss_pred HHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh
Confidence 55666665554 44555666555555544432 2 2222234455444 46788888888877
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.5e-07 Score=85.42 Aligned_cols=140 Identities=11% Similarity=0.201 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhh----HHHHH-----HHHHHHHH
Q 016418 198 ISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPL----LNPFV-----ALLASIAY 265 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~----~~~~~-----~~~~~~~~ 265 (390)
..+..+...+.......+++.|+++.+|.++..+|.++.+..+...+ ..|.++|| +|||+ +.+..+++
T Consensus 11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~ 90 (473)
T PRK10429 11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVV 90 (473)
T ss_pred hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHH
Confidence 34455556667777888999999999999999999998887777665 34889994 47766 44444555
Q ss_pred HHhHhcccc---h----hHHHHHHHHHHHHhhhHHHHHHHHhhcc-CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 266 ALFYGLAWA---S----WVPYLSASFGVIYVLVKPSTYAIISKAS-GLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 266 ~~~~~~~~~---~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
+.++...++ . |......+...+.........++..|.. ++++|.+..+......+++..+.+.+...+.+..
T Consensus 91 ~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~ 170 (473)
T PRK10429 91 LFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYV 170 (473)
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444433221 1 1111234556677777778888999988 5789999999877777887777666655554443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-05 Score=71.20 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=56.5
Q ss_pred HHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 58 QTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 58 ~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
.++-+....+++++.+.+.|+.|.|..+.++........+...+.+ -+.+++.-.+.|+ |.+..+.....|+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N----~y~~yfssallG~-Gaallw~GqG~yl 127 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN----SYYLYFSSALLGF-GAALLWTGQGGYL 127 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc----hHHHHHHHHHhhh-hHHheecccceeh
Confidence 5677777888889999999999999999999999998887776655 4778888999999 6555444333343
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=86.40 Aligned_cols=123 Identities=14% Similarity=0.078 Sum_probs=98.8
Q ss_pred hhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhHhcccc--hhHHH-HHHHHHHHHhhh
Q 016418 222 AVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFYGLAWA--SWVPY-LSASFGVIYVLV 291 (390)
Q Consensus 222 ~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~-~~~~~g~~~~~~ 291 (390)
+.+++++.+-+++++....+.++ -.+++.||+|-|+ +.++.++..++.+.+.+ .+.++ .-++.|++.+..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 35788899999998777666654 4489999999888 55666666666655443 34333 668999999999
Q ss_pred HHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 292 KPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 292 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
+|+...+..+-.|+++|++..++......+|.+++-++.|.+.+...|+...|
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sif 198 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIF 198 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHH
Confidence 99999999999999999999999999999999999999999999722665544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.8e-07 Score=81.84 Aligned_cols=164 Identities=11% Similarity=-0.014 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHH--HHHHHHHHHHH----HHHHhhHHHHHH----H-HHHHH
Q 016418 196 RGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEIL--MMVGIGSIVSQ----ILVLPLLNPFVA----L-LASIA 264 (390)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~--~~~~~~~~~~~----~~~~~~~~~~~~----~-~~~~~ 264 (390)
..+...++.....++.....+|.++++. |.|..++|.+. ....+...+.+ .+..||.+||+. . +....
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~-g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLRED-GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 4455667777788888899999999987 99999999873 33333333322 334666777761 1 11111
Q ss_pred HHHhHh---cccc--hhHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 016418 265 YALFYG---LAWA--SWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLS 339 (390)
Q Consensus 265 ~~~~~~---~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~ 339 (390)
...... ...+ .|.........+......+...++..|..++++++...+.......+|..+|+...+.+.++. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~-g 161 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF-G 161 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C
Confidence 111121 1212 122223344455566666777778888888777788888887777888898888888888876 6
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhhhcc
Q 016418 340 TDAPFNCKGFSIIVASICLMVSLSCACML 368 (390)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
++.+ |.+.+++.++..+..+..
T Consensus 162 w~~~-------f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 162 QRPA-------FLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHc
Confidence 6553 355555554444443333
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-06 Score=78.36 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH-----HHHHHHHHHH
Q 016418 196 RGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV-----ALLASIAYAL 267 (390)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~ 267 (390)
.++...+++..+..+...++++.|+++. |+|..++|.+.+...+...+ ..+.++||..+++ ..+..++...
T Consensus 5 ~rLs~~~f~~f~~~G~~~p~~~~~L~~~-G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~ 83 (400)
T PF03825_consen 5 FRLSLMYFLYFFAYGAFLPYLPLYLESR-GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALL 83 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Confidence 3456677777888888999999999987 89999999999888777665 3478899976544 3333444444
Q ss_pred hHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhh
Q 016418 268 FYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLA 329 (390)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~ 329 (390)
.....++.|.+. ...+..+......|...++..+... ++++-+|-....+++|-.++...
T Consensus 84 ~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~ 144 (400)
T PF03825_consen 84 LLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA 144 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence 445555666554 5566677777788888888887775 34455666677777777766544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-06 Score=78.95 Aligned_cols=128 Identities=14% Similarity=-0.009 Sum_probs=83.3
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHH---HHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HHHHH
Q 016418 213 SAVLLFYLKAVFGFNKNQFSEILMMV---GIGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LSASF 284 (390)
Q Consensus 213 ~~~~~~~~~~~~g~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 284 (390)
.+.++...++ .|-++. ..++.... ........|.++|.+|||. +.++..++.++.+.+++...++ ...+.
T Consensus 64 a~~l~~I~~d-iG~~~~-~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~ 141 (599)
T PF06609_consen 64 ASILPYINAD-IGGSDN-WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY 141 (599)
T ss_pred HHHHHHHHHh-cCCCcc-chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence 3444544444 465443 34443333 3333345589999999999 7777888888888888877776 55777
Q ss_pred HHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 285 GVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 285 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
|++.+.... ....++|..|.+.|+...++.....-.....+|.++..+.... ++++.+
T Consensus 142 GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~-~WRw~~ 199 (599)
T PF06609_consen 142 GVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS-GWRWIF 199 (599)
T ss_pred HHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC-CcchHH
Confidence 888766553 4556899999999988777666554445556666665554432 455543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.5e-07 Score=82.57 Aligned_cols=138 Identities=12% Similarity=0.125 Sum_probs=93.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhh----HHHHH-----HHHHHHHHHH
Q 016418 200 FVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPL----LNPFV-----ALLASIAYAL 267 (390)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~----~~~~~-----~~~~~~~~~~ 267 (390)
+..+...........+++.|+.+.+|+++..+|.++.+..+...+ ..|.++|| +|||+ +.+..++...
T Consensus 16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~ 95 (444)
T PRK09669 16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL 95 (444)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence 344444555566678889999999999999999999888777765 44889998 55555 3333334443
Q ss_pred hHhcccc-------hhHHHHHHHHHHHHhhhHHHHHHHHhhcc-CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 268 FYGLAWA-------SWVPYLSASFGVIYVLVKPSTYAIISKAS-GLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 268 ~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
+....++ .|......+.+.+.........++..|.. ++++|++..+.......+|..+++.+...+....
T Consensus 96 l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~ 173 (444)
T PRK09669 96 LTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDIL 173 (444)
T ss_pred HHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333322 11111234555566666666678888877 5578999999999888998888887776666554
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.7e-06 Score=73.73 Aligned_cols=88 Identities=22% Similarity=0.272 Sum_probs=65.9
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhccccc----ccCCchH
Q 016418 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLAD----EYGRKPL 84 (390)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Grk~~ 84 (390)
+.+..+....+-..+++..-...++.|+++. |.+. .+.+.+-....+...+.+|+.|..+| ||||||.
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l---Gvph-----k~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP 103 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSL---GVPH-----KWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP 103 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHc---CCCc-----ccccccccccccccceecccccccccccccccccccc
Confidence 5566666667777777888888888888776 6655 34477777888889999999999999 5888765
Q ss_pred H-HHHHHHHHHHHHHHHhccC
Q 016418 85 L-LITVSTTIVPFTLLAFNQS 104 (390)
Q Consensus 85 l-~~~~~~~~i~~~~~~~~~~ 104 (390)
+ ..+.+...++.++..++.+
T Consensus 104 fI~~~s~~i~~~l~Lig~aaD 124 (498)
T KOG0637|consen 104 FILAGSLLIAVSLFLIGYAAD 124 (498)
T ss_pred hHHHhhHHHHHHHhhhhhHhh
Confidence 5 4556667777777777665
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.7e-07 Score=82.07 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=103.3
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHh----hHHHHH-----HHHHHHHHHHhH
Q 016418 202 SFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLP----LLNPFV-----ALLASIAYALFY 269 (390)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~----~~~~~~-----~~~~~~~~~~~~ 269 (390)
.+...+.......+++.|+.+..|.++...|.+..+..+...+ ..|.++| |+|||+ +.+..++++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHh
Confidence 3455556666777888999999999999999998888777775 4488899 788877 666666666666
Q ss_pred hcc-c-c-------hhHHHHHHHHHHHHhhhHHHHHHHHhhccC-CCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 016418 270 GLA-W-A-------SWVPYLSASFGVIYVLVKPSTYAIISKASG-LNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFL 338 (390)
Q Consensus 270 ~~~-~-~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~ 338 (390)
... + + .|.....+++.++.........++..|..+ +++|.+..+..+....+|..+...+.+.+.+..+
T Consensus 90 f~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g 168 (428)
T PF13347_consen 90 FSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFG 168 (428)
T ss_pred hccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 554 3 1 112223355677777778888889999987 4689999999999999999888888888887763
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.7e-07 Score=59.47 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHH
Q 016418 13 HLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVST 91 (390)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~ 91 (390)
.+-...++...+.+...|.+|.+.++. |.+. .++|.+.++..+...+++|++|.++||++|++..+.....
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~~---Gl~~-----~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQL---GLSP-----SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhc---CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 344556677778899999999998654 4444 6779999999999999999999999999998877665443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.9e-06 Score=77.98 Aligned_cols=139 Identities=11% Similarity=0.132 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhh----HHHHH-----HHHHHHHHH
Q 016418 199 SFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPL----LNPFV-----ALLASIAYA 266 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~----~~~~~-----~~~~~~~~~ 266 (390)
.+..+..+........++..|+.+..|.++..+|.++.+.-+.-.+ .-|.++|| +|||+ +.+..++.+
T Consensus 15 g~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~ 94 (460)
T PRK11462 15 GMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVC 94 (460)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence 3444455666677778899999999999999999998887776664 34889996 46665 434444444
Q ss_pred HhHhcccc----h---hHHHHHHHHHHHHhhhHHHHHHHHhhccC-CCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 267 LFYGLAWA----S---WVPYLSASFGVIYVLVKPSTYAIISKASG-LNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 267 ~~~~~~~~----~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
.++...++ . |......++..+.........++..|..+ +++|++..+.......+|..+++.+...+.+..
T Consensus 95 ~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~ 173 (460)
T PRK11462 95 VLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI 173 (460)
T ss_pred HHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433331 1 11123345677777777777888888876 688999999999999999888888877776655
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.3e-07 Score=68.83 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=60.6
Q ss_pred HHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 58 QTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 58 ~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
.+.+.++..+++++.|++.||+|||+.+..+.....++.+.....++ ++.+.+.+++.|+ +.+...+...+++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~ 76 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---ITVLIIARFLQGF-GAAFALVAGAALI 76 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHhHHHHH
Confidence 34567788899999999999999999999999999999888888888 8889999999999 4455555555554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-05 Score=66.81 Aligned_cols=121 Identities=16% Similarity=0.197 Sum_probs=76.4
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHHH--HHHHHHHhhHHHHH----HHHHHHHHHHhHhcc-------cchhHHH-
Q 016418 214 AVLLFYLKAVFGFNKNQFSEILMMVGIGSI--VSQILVLPLLNPFV----ALLASIAYALFYGLA-------WASWVPY- 279 (390)
Q Consensus 214 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~~~~~~~- 279 (390)
..+..-+++.+|+|..+...+-....++.. +..|.+.|+.+.+. +.+...+++...... .+.|.+.
T Consensus 22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~ 101 (250)
T PF06813_consen 22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCL 101 (250)
T ss_pred hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHH
Confidence 344556678889999988777655444433 45589999999988 444444444443322 1233333
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 280 LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
..++.+.+.............+.+| ++||++.|+.-....+++.+-..+...+++
T Consensus 102 ~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 102 FLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 2233344444444555555567888 789999999999999888865555555544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-05 Score=74.42 Aligned_cols=166 Identities=12% Similarity=0.045 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH--HHHHHHhhHH-----HHH----HHHHH-H
Q 016418 196 RGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV--SQILVLPLLN-----PFV----ALLAS-I 263 (390)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~-----~~~----~~~~~-~ 263 (390)
..+...++..... .......+.++++.+|.++.+++.+.+...+...+ ..+.++|++. ||. +.++. .
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~ 107 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSA 107 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHH
Confidence 3444456666666 77777888888888899999998887777766653 4689999995 343 22222 2
Q ss_pred HHHHhHhcccchh-HHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhh---HHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 016418 264 AYALFYGLAWASW-VPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGK---AQGFIAGVQSISSLLSPLAMSPLTSWFL 338 (390)
Q Consensus 264 ~~~~~~~~~~~~~-~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~---~~g~~~~~~~~~~~~g~~~~g~l~~~~~ 338 (390)
+.+..+...++.. ... ..++.+++.+...+...++..|..+ |+++. .++......++|..+|+.++|.+.+..
T Consensus 108 ~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~- 185 (468)
T TIGR00788 108 ILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT- 185 (468)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 2223333333322 222 4467778888888888999999888 54443 344444455689999999999999876
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHhhhccccc
Q 016418 339 STDAPFNCKGFSIIVASICLMVSLSCACMLDTE 371 (390)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
+++. .+.+.+.+.++......+.+++
T Consensus 186 ~~~~-------~f~~~a~l~ll~~~~~~~~~E~ 211 (468)
T TIGR00788 186 LTRI-------LFLITAALLLLQLFVSNLSKER 211 (468)
T ss_pred Ccch-------HHHHHHHHHHHHHHHHHhcccc
Confidence 5554 3344555555544333444443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-05 Score=72.98 Aligned_cols=129 Identities=16% Similarity=0.043 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhH---hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCc
Q 016418 236 MMVGIGSIVSQILVLPLLNPFV----ALLASIAYALFY---GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNN 307 (390)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 307 (390)
.+.++.+....++++|++|||. ..+...++.++. ...++...++ .-++.|+..+.......-+++|..|++.
T Consensus 70 ~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~ 149 (485)
T KOG0569|consen 70 FIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL 149 (485)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh
Confidence 3445555567799999999997 222222222222 2334455555 4588999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhh-hhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhccccc
Q 016418 308 QGKAQGFIAGVQSISSLLSPLAMSP-LTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACMLDTE 371 (390)
Q Consensus 308 ~g~~~g~~~~~~~~~~~~g~~~~g~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
||....+......+|..++..++.. +... ...|++ .+....+..++..+...+.++.
T Consensus 150 RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt--~~~W~~-----l~~~~~i~~~~~l~~l~~~PES 207 (485)
T KOG0569|consen 150 RGALGTLLQIGVVIGILLGQVLGLPSLLGT--EDLWPY-----LLAFPLIPALLQLALLPFLPES 207 (485)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHccHHhcCC--CcchHH-----HHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999889888888555432 2221 222443 3344445455555555555543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-06 Score=79.47 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHH---HHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHH
Q 016418 196 RGISFVSFFYKLGMSGISAVL---LFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAY 265 (390)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~ 265 (390)
|...+..|+......+..... -..+++.++.+..+++++.++...... ...+.+.||++.|. +.++..++
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g 124 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG 124 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 444455555444433333222 234456668777777777655543333 34478889999888 77888889
Q ss_pred HHhHhcccchhHHH--HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCC
Q 016418 266 ALFYGLAWASWVPY--LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAP 343 (390)
Q Consensus 266 ~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~ 343 (390)
+++..++++.|.++ ..++.|+|.++.+......+...++ ++|+.+.|+......+|.++-|.+...+.+.. |++..
T Consensus 125 ~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~-G~r~~ 202 (509)
T KOG2504|consen 125 LLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKY-GWRGA 202 (509)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHh-CcHHH
Confidence 99999999998886 5578899999988888888887776 89999999999999999999999999999977 66553
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00013 Score=63.17 Aligned_cols=152 Identities=14% Similarity=0.044 Sum_probs=93.8
Q ss_pred HHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhHHH--------
Q 016418 184 DAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNP-------- 255 (390)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------- 255 (390)
+.++.+.+-|..+.+.......-.++.+-....+.-+.|+ |.+..+.+......--..++. +....|+..
T Consensus 256 k~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~-Gv~ke~Lal~~v~~~plqI~l-~~~~gk~ta~~~pl~~~ 333 (510)
T KOG3574|consen 256 KLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEH-GVPKEELALIAVPLVPLQIAL-PLYIGKWTAGPRPLNVF 333 (510)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHc-CCChhHheeeeeehhhHHHhh-hhhheeecCCCCcchHH
Confidence 3456667788888888888888888888888888888877 998887766542221222222 222222211
Q ss_pred --HH------HHHHHHHHHHhHhccc---c----hhHHHH--HHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHH
Q 016418 256 --FV------ALLASIAYALFYGLAW---A----SWVPYL--SASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGV 318 (390)
Q Consensus 256 --~~------~~~~~~~~~~~~~~~~---~----~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 318 (390)
+. +..-.++....-.+.+ . ...+.. -.+.+...-..+...++..+++.||...|+.+.+.|+.
T Consensus 334 lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTL 413 (510)
T KOG3574|consen 334 LKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTL 413 (510)
T ss_pred HHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHH
Confidence 11 1111111111111111 0 111111 12334444445667778889999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhccc
Q 016418 319 QSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 319 ~~~~~~~g~~~~g~l~~~~ 337 (390)
.++|+---..+..++.|.+
T Consensus 414 snLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 414 SNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHhcCCcHHHHHHHhcccC
Confidence 9999888778888888865
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0035 Score=57.75 Aligned_cols=89 Identities=19% Similarity=0.189 Sum_probs=57.1
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhH-hhhhcccccccCCchHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVV-LPLLGQLADEYGRKPLL 85 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~G~l~Dr~Grk~~l 85 (390)
+.+.+....+..|+..+++.+.-|.=-.+ ..+..+.......++.+...++..+. .++.+++++|++|++++
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR~lKD~l-------vv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf 77 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILRDTKDTL-------VVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALF 77 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhe-------eecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhH
Confidence 44556666666666666666555443322 22222112234477777777776666 89999999999999998
Q ss_pred HHHHHHHHHHHHHHHhc
Q 016418 86 LITVSTTIVPFTLLAFN 102 (390)
Q Consensus 86 ~~~~~~~~i~~~~~~~~ 102 (390)
-.....+.....++++.
T Consensus 78 ~~~~~~F~~~f~lF~~v 94 (472)
T TIGR00769 78 YTVISPFLGFFALFAFV 94 (472)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87777666666655543
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-05 Score=71.22 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH---------HHHHHHHH
Q 016418 198 ISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV---------ALLASIAY 265 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~ 265 (390)
.....+.....+.....++..|..+..|.++..+|.++.+.-+.-++ ..|.+.||..+|. +.+..++.
T Consensus 17 Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~ 96 (467)
T COG2211 17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIV 96 (467)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHH
Confidence 44455666677788889999999999999999999999888877775 4478888755443 33333344
Q ss_pred HHhHhcccc-----hh--HHHHHHHHHHHHhhhHHHHHHHHhhccC-CCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 266 ALFYGLAWA-----SW--VPYLSASFGVIYVLVKPSTYAIISKASG-LNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 266 ~~~~~~~~~-----~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
..+...+++ .+ ..+.-.+.++++........++..+..+ +++|.+..+.-....++|..+...+.+.+....
T Consensus 97 ~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~ 176 (467)
T COG2211 97 AVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLF 176 (467)
T ss_pred HHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444434432 12 2224467788888887777888888764 578999999999999999999999998888887
Q ss_pred ccCC
Q 016418 338 LSTD 341 (390)
Q Consensus 338 ~~~~ 341 (390)
++.+
T Consensus 177 g~~~ 180 (467)
T COG2211 177 GGGD 180 (467)
T ss_pred CCCc
Confidence 4443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.7e-05 Score=71.94 Aligned_cols=100 Identities=14% Similarity=-0.045 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchh
Q 016418 235 LMMVGIGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQG 309 (390)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 309 (390)
..+.+..+.+..+.++|++|||. +.+...++.++.+.+++.+.+. ..++.|+|.|........+.+|..|++.||
T Consensus 98 ~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG 177 (513)
T KOG0254|consen 98 LNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRG 177 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhH
Confidence 34444555566789999999998 7777778888888888877776 558999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 310 KAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 310 ~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
...+..+....+|..++ .+.+...+
T Consensus 178 ~l~~~~~l~~~~Gi~~~-~~~~~~~~ 202 (513)
T KOG0254|consen 178 TLVSLYQLFITIGILLG-YCINYGTS 202 (513)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhhhc
Confidence 99999999999888877 44444443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00019 Score=62.04 Aligned_cols=127 Identities=13% Similarity=0.026 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHhHhcccchhHHHHHHH
Q 016418 212 ISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFV--------ALLASIAYALFYGLAWASWVPYLSAS 283 (390)
Q Consensus 212 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (390)
....++.. ++.+|.|....|++.++..+...+. ..+.+++.||. ++++.+++.++=.....+..+....+
T Consensus 31 vgPLL~~I-r~~~gls~s~aGlLTtLPll~fg~~-ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l 108 (395)
T COG2807 31 VGPLLDEI-RQDLGLSFSVAGLLTTLPLLAFGLF-APAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLL 108 (395)
T ss_pred hhhhHHHH-HHHhcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 33444433 4456999999999887766555444 34445555554 44444444444434322233335578
Q ss_pred HHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 016418 284 FGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTD 341 (390)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~ 341 (390)
.|.+.+..+....+.+.+.+| ++.+..+|++.....+++++++.+.-.+.++.++++
T Consensus 109 ~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~ 165 (395)
T COG2807 109 AGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWR 165 (395)
T ss_pred HHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHH
Confidence 899999999999999999999 788999999999999999999999999988753333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.2e-05 Score=70.83 Aligned_cols=118 Identities=23% Similarity=0.221 Sum_probs=89.9
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCc--h
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRK--P 83 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk--~ 83 (390)
++.|++...+++.++..-+.+.+......|..+.+ |.+. .+...+..+..+...+++.++|++.||+|.| +
T Consensus 278 ~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~l--g~s~-----~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~ 350 (477)
T PF11700_consen 278 RKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVL--GMST-----TQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKR 350 (477)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence 45567777778888877788888888888877665 5554 3346666777888999999999999999999 8
Q ss_pred HHHHHHHHHHHHHHHHHh--------ccCchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 84 LLLITVSTTIVPFTLLAF--------NQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 84 ~l~~~~~~~~i~~~~~~~--------~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
+++.+++...+..+...+ .++ .+.+++.-++.|+ ..|...+...++.
T Consensus 351 ~l~~~l~~~~~i~~~g~~G~~~~~~g~~~---~~~f~~~a~~~G~-~~G~~qs~sRs~~ 405 (477)
T PF11700_consen 351 TLLISLILWIIIPLYGLFGFWPSFFGLKS---PWEFWVLAVLIGL-FMGGIQSASRSLF 405 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCccc---HHHHHHHHHHHHH-HhhhHHHHHHHHH
Confidence 888888877555544444 455 7888899999999 4577777777777
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0013 Score=57.33 Aligned_cols=138 Identities=13% Similarity=0.020 Sum_probs=81.1
Q ss_pred hhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH-HHHHHH---HHHHhHhcccchhHHH-HHHHHHHHHhhhHH
Q 016418 222 AVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV-ALLASI---AYALFYGLAWASWVPY-LSASFGVIYVLVKP 293 (390)
Q Consensus 222 ~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~ 293 (390)
+.+|++..+++.++...-..+.+ ..|.+.||+|||+ +++.+. ++.+ .-..++.+.++ .-++.|++....+.
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHH
Confidence 35799999998887555444443 3378999999999 332222 2222 22334555555 44788888888877
Q ss_pred HHHHHH-hhc----cCCCchhhHHHHHHH-HHHHHHhhhhhhhhhhhcccccC--CCCCCCCchHHHHHHHHHHHHHHhh
Q 016418 294 STYAII-SKA----SGLNNQGKAQGFIAG-VQSISSLLSPLAMSPLTSWFLST--DAPFNCKGFSIIVASICLMVSLSCA 365 (390)
Q Consensus 294 ~~~~~~-~~~----~~~~~~g~~~g~~~~-~~~~~~~~g~~~~g~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (390)
..-++. .|. .|++..+..++.... .+.+-.+.+..++-.+.++. +. .. +|.....+..++.++.
T Consensus 141 ~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~-~~g~va-------PF~~a~~~l~~~~~~I 212 (354)
T PF05631_consen 141 AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF-GFGPVA-------PFDAAIVLLAVAAVLI 212 (354)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh-CCCCcc-------hHHHHHHHHHHHHHHH
Confidence 777644 333 454555666665552 33444455555555666654 33 33 4566666666666655
Q ss_pred hcc
Q 016418 366 CML 368 (390)
Q Consensus 366 ~~~ 368 (390)
...
T Consensus 213 ~~~ 215 (354)
T PF05631_consen 213 LKT 215 (354)
T ss_pred Hhc
Confidence 433
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-05 Score=53.84 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=63.9
Q ss_pred HHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHh
Q 016418 22 WVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAF 101 (390)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~ 101 (390)
+++-..+.|.+|.+.+|. +.+..+.|++.+.+++|++++++...++.++..+++.+..+.+...+..+.+++
T Consensus 5 GigRFayTplLP~M~~~~--------~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADG--------GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred hhHHHHHHhHhHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 344556889999887443 333466799999999999999999999999988899999999999999999999
Q ss_pred ccC
Q 016418 102 NQS 104 (390)
Q Consensus 102 ~~~ 104 (390)
.++
T Consensus 77 ~~~ 79 (85)
T PF06779_consen 77 THS 79 (85)
T ss_pred Hhc
Confidence 888
|
Note that many members are hypothetical proteins. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00019 Score=61.49 Aligned_cols=290 Identities=15% Similarity=0.087 Sum_probs=163.4
Q ss_pred hhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH---------------
Q 016418 70 PLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA--------------- 134 (390)
Q Consensus 70 ~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i--------------- 134 (390)
.+.=.+.|-...|++++.-.+.......+..+.++ .+.+=+.-+..|... +. -.+..+|+
T Consensus 60 vpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s---V~~mQvlE~FyG~~t-Aa-EIAYysYIYs~Vd~~~Yqrvt~y 134 (433)
T KOG3810|consen 60 VPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS---VKAMQVLEFFYGPAT-AA-EIAYYSYIYSKVDPEMYKRVTGY 134 (433)
T ss_pred HHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCC---chheeeehhhcChHH-HH-HHhhhheeeeecCHHHHHHHHHH
Confidence 34445789998999999888888888888888888 777777777777722 22 23444444
Q ss_pred -------------------------------HHHHHHHHHHHHHHHhcccCCCCC--cccccccccccccccccccc---
Q 016418 135 -------------------------------VSIALLIFVPVYMQFFLVETVESA--PRKDQESSGLKKAVNVLDRR--- 178 (390)
Q Consensus 135 -------------------------------~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~--- 178 (390)
...............++|..++.. ++++++....+.++.++..+
T Consensus 135 ~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~ 214 (433)
T KOG3810|consen 135 CRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMS 214 (433)
T ss_pred hHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCccchhhH
Confidence 222233333344445666655221 01110000001111111111
Q ss_pred -----cccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCch--hHHH---HHHHHHHHHHHHHHH
Q 016418 179 -----YKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKN--QFSE---ILMMVGIGSIVSQIL 248 (390)
Q Consensus 179 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~g~---~~~~~~~~~~~~~~~ 248 (390)
...+.+.++..-+||+++.-.+-..+...++..+.++.....++.- -++. ..|. +....|..+.+..+.
T Consensus 215 ~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~-~~~~~vyNG~veAv~tlLGa~~~~~~g~ 293 (433)
T KOG3810|consen 215 YLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA-PNPANVYNGAVEAVSTLLGAIAALAAGY 293 (433)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC-CCchhhhcCHHHHHHHHHHHHHHHHHHh
Confidence 1122233445567898888777777777777777776666665542 1111 1222 233444444455566
Q ss_pred HHhhHHHHH------HHHHHHHHHHhHhcccchhHHHHH-HHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHH
Q 016418 249 VLPLLNPFV------ALLASIAYALFYGLAWASWVPYLS-ASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSI 321 (390)
Q Consensus 249 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 321 (390)
+.-.+.|+. +.+..+...+.+..+++.|..++. .++........++....+++....|.-|..+|++..+.-+
T Consensus 294 l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~ 373 (433)
T KOG3810|consen 294 LNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALI 373 (433)
T ss_pred eeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHH
Confidence 554444543 333444455566667777877744 6667777777788888888888888899999998877665
Q ss_pred HHhhhhhhhhhhhcccc---cCCCCCCCCchHHHHHHHHHHHHHHhhhcc
Q 016418 322 SSLLSPLAMSPLTSWFL---STDAPFNCKGFSIIVASICLMVSLSCACML 368 (390)
Q Consensus 322 ~~~~g~~~~g~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
-+.+ +.-.+.|..+ ..+.-+...+.-|++.+.+.++.....+..
T Consensus 374 lQsi---lT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 374 LQSI---LTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred HHHh---heEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence 5543 4444455320 112223333345677777777776554433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.1e-05 Score=68.52 Aligned_cols=140 Identities=12% Similarity=-0.025 Sum_probs=96.2
Q ss_pred hhcCCCchhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHH----hHhcccchhHHH-HHHHHHHHHhhhHH
Q 016418 222 AVFGFNKNQFSEILMMVGI---GSIVSQILVLPLLNPFVALLASIAYAL----FYGLAWASWVPY-LSASFGVIYVLVKP 293 (390)
Q Consensus 222 ~~~g~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~g~~~~~~~~ 293 (390)
+..+....+.+.+.++..+ ++.+..+.+.||+.-.+++....+... +....++.+.++ ..++.|+..+..+|
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP 153 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP 153 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence 3445556666665544443 344455888999885553333332222 222355677776 66999999999999
Q ss_pred HHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc-----ccCCCCCCCCchHHHHHHHHHHHHHHhhhcc
Q 016418 294 STYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF-----LSTDAPFNCKGFSIIVASICLMVSLSCACML 368 (390)
Q Consensus 294 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
....++...+.+++||..+|+..+...+|+++|+.+...+...- .++++ .|++.+++.+...++.++.
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~-------~FiI~G~i~~~~gi~~f~~ 226 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRW-------LFIIEGVITLVLGIVVFFF 226 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCcee-------ehhHHHHHHHHHHheEEEE
Confidence 99999999999999999999999999999999999988875421 13333 5566776666655544443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-05 Score=75.00 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHH
Q 016418 239 GIGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQG 313 (390)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g 313 (390)
...+.+..|.++|++|||. ++++..++-+..+++++.+.+. .-++.|++.+........+..|.+++++|+.+..
T Consensus 131 ~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~ 210 (521)
T KOG0255|consen 131 VLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALT 210 (521)
T ss_pred HHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHH
Confidence 3444455589999999999 7777777778888899988886 6699999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhc
Q 016418 314 FIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 314 ~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+ ......+..++|...+++..
T Consensus 211 ~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 211 L-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred H-HHHHHHHHHHHHHHHHHHHh
Confidence 9 88888888889999888887
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.2e-05 Score=66.41 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=89.0
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHH
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLL 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l 85 (390)
++++++....++.++..=+.+.+...-..|.. .+.+.+..+..++.....+..++++.++|++.||+|.|+++
T Consensus 249 ~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~-------~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl 321 (438)
T COG2270 249 RGRKNLVLFLIARFFYIDGVNTILAMGGVFGA-------ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL 321 (438)
T ss_pred hcccchHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 44567776666666666566555555555644 33445556668888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 86 LITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 86 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
..+.++..+..+...+... ...+.++-.+.|. ..|...+.+.+|.
T Consensus 322 ~~~lvi~~~~~~~~~~~~~---~~~f~i~gll~g~-s~G~~qA~SRSy~ 366 (438)
T COG2270 322 MIGLVILSIAALYLIFLEG---ELDFWILGLLVGT-SLGGAQASSRSYL 366 (438)
T ss_pred hHHHHHHHHHHHHHHHccc---cHHHHHHHHHHHH-hcchHHHHHHHHH
Confidence 9999999998888777766 5566677777888 4566777888887
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00014 Score=67.57 Aligned_cols=133 Identities=15% Similarity=0.129 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhH----HHHH-----HHH-HHHHH
Q 016418 199 SFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLL----NPFV-----ALL-ASIAY 265 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~----~~~~-----~~~-~~~~~ 265 (390)
.+..+...........+++.|+++..|+++.++|.+.....+...+ ..|.++||. |||+ +.+ ....+
T Consensus 14 g~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~ 93 (448)
T PRK09848 14 SLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS 93 (448)
T ss_pred ccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence 3444455566666677888899999999999999998877766664 448899986 5555 212 22222
Q ss_pred HHhHhcc----cch--h-HHHHHHHHHHHHhhhHHHHHHHHhhccCC-CchhhHHHHHHHHHH-----HHHhhhhhhhh
Q 016418 266 ALFYGLA----WAS--W-VPYLSASFGVIYVLVKPSTYAIISKASGL-NNQGKAQGFIAGVQS-----ISSLLSPLAMS 331 (390)
Q Consensus 266 ~~~~~~~----~~~--~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~-----~~~~~g~~~~g 331 (390)
.+.+... .+. + ......+.+.+.+...+...++..+..++ ++|.+..+......+ ++..++|.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 94 VLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred HHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 111 1 11233556777777777777776666543 567777666554333 34444444443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00022 Score=64.95 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=91.7
Q ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhh-hcCCCchhHHHHHHHHHHHHHHHH---HHHHhhHHH--HH---HHHHHH
Q 016418 193 PTLRGISFVSFFYKLGMSGISAVLLFYLKA-VFGFNKNQFSEILMMVGIGSIVSQ---ILVLPLLNP--FV---ALLASI 263 (390)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~--~~---~~~~~~ 263 (390)
|.++...+..++....+....+..-.|+++ ..+-+....|++.+...++.++.. ++...|.++ +. +.+++.
T Consensus 34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~ 113 (488)
T KOG2325|consen 34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAI 113 (488)
T ss_pred HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHH
Confidence 345556666677666666666666667766 125666778888877777766543 555555553 33 667777
Q ss_pred HHHHhH-h--cccc--hhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 016418 264 AYALFY-G--LAWA--SWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLT 334 (390)
Q Consensus 264 ~~~~~~-~--~~~~--~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~ 334 (390)
++.+++ . ..++ .+.++ .-++.|+|.+.. ....+++++..-.++|.++++..+....+|..+||.+...+.
T Consensus 114 ~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 114 IGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 776665 2 2222 22222 346666665544 556888888877799999999888888888888887765544
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00016 Score=63.89 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=79.1
Q ss_pred hcCCCchhHHHHHHHHHHHHH--HHHHHHHhhHH-----HHH-----HHHHHHHHHHhHh-----ccc-------chh--
Q 016418 223 VFGFNKNQFSEILMMVGIGSI--VSQILVLPLLN-----PFV-----ALLASIAYALFYG-----LAW-------ASW-- 276 (390)
Q Consensus 223 ~~g~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~-----~~~-------~~~-- 276 (390)
+++.+....+.+.+.-....- ...|..+|+-. ||. +......+..+.. ... +.|
T Consensus 9 EL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g 88 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG 88 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence 356666666666655544443 23377888877 665 3333333222222 122 222
Q ss_pred HHH---HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 277 VPY---LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 277 ~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
... ...++|++.....+...+++.|..|+|+|+++.++...+.-+|..++..+.|.+.+.+
T Consensus 89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~ 152 (403)
T PF03209_consen 89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF 152 (403)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 222 2356788888899999999999999999999999999999999999999999999864
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00039 Score=66.88 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=98.5
Q ss_pred HhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhh-HHHHH----HHHHHHHHHHhHhcccc-----
Q 016418 208 GMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPL-LNPFV----ALLASIAYALFYGLAWA----- 274 (390)
Q Consensus 208 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~----- 274 (390)
++++....+..|+.+.+|++......++.......- +.+++++|+ +||++ +.++..++..++.....
T Consensus 2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~ 81 (654)
T TIGR00926 2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH 81 (654)
T ss_pred ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 345667778888888889888766555433322211 344777776 66666 44445555555544321
Q ss_pred h---hHH-HHHHHHHHHHhhhHHHHHHHHhhccCCCc---hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCC
Q 016418 275 S---WVP-YLSASFGVIYVLVKPSTYAIISKASGLNN---QGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCK 347 (390)
Q Consensus 275 ~---~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~ 347 (390)
. ... +...+..+|.+..-|+..+...|..++++ +-+.+.++....++|+.+++.+.+++-+..+.++- +...
T Consensus 82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~-~~~~ 160 (654)
T TIGR00926 82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGC-QDCY 160 (654)
T ss_pred chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-Ccch
Confidence 1 112 24467788888888999999998887543 56778888888999999999999988754312110 0001
Q ss_pred chHHHHHHHHHHHHHHhhhc
Q 016418 348 GFSIIVASICLMVSLSCACM 367 (390)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~ 367 (390)
...|.+.+++.+++.+....
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 11455566666666555443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.2e-07 Score=82.95 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhccc---chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhH
Q 016418 240 IGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAW---ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKA 311 (390)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 311 (390)
+.+.+..+.++||+|||. +.....++.++..+++ +.+.+. ..++.|++.|...+....++.|..|+++||+.
T Consensus 60 ~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~ 139 (451)
T PF00083_consen 60 IVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFL 139 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 444456688999999999 6666677777777887 666665 55889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhh
Q 016418 312 QGFIAGVQSISSLLSPLAMSPL 333 (390)
Q Consensus 312 ~g~~~~~~~~~~~~g~~~~g~l 333 (390)
.++.+....+|..++..+.-..
T Consensus 140 ~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 140 SSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred cccccccccccccccccccccc
Confidence 9999988888888777665444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00028 Score=61.91 Aligned_cols=89 Identities=13% Similarity=-0.051 Sum_probs=64.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHH
Q 016418 11 LLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVS 90 (390)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~ 90 (390)
++...+..++....+......++.|+.+. ...+.+..+.+...+.+..+..++....+++.||+|+||.+..+..
T Consensus 142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~-----~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~ 216 (310)
T TIGR01272 142 LVLGALGIFVYVGAEVSAGSFLVNFLSDP-----HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAF 216 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 44444444444445566666778887543 1223445666899999999999999999999999999999888888
Q ss_pred HHHHHHHHHHhccC
Q 016418 91 TTIVPFTLLAFNQS 104 (390)
Q Consensus 91 ~~~i~~~~~~~~~~ 104 (390)
+..++.++....++
T Consensus 217 l~~~~~~l~~~~~~ 230 (310)
T TIGR01272 217 LAVLLSIGAALTHG 230 (310)
T ss_pred HHHHHHHHHHHcCC
Confidence 77777766655554
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00015 Score=64.62 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=71.9
Q ss_pred chhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhccc--c-h-----hHHHHHHHHHHHHhhhH
Q 016418 228 KNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAW--A-S-----WVPYLSASFGVIYVLVK 292 (390)
Q Consensus 228 ~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~-~-----~~~~~~~~~g~~~~~~~ 292 (390)
+...+.+..+..++.+ +..|++.|++|||+ .+++..++.++.+... + + |+...-+++|+|.|.-+
T Consensus 83 s~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY 162 (538)
T KOG0252|consen 83 SGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY 162 (538)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence 3344444444333333 45599999999999 5555555554444432 1 1 22224578999999999
Q ss_pred HHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh
Q 016418 293 PSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPL 333 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l 333 (390)
|...+..+|....+.||.-.+....++..|...|.++.-.+
T Consensus 163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv 203 (538)
T KOG0252|consen 163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIV 203 (538)
T ss_pred cchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHH
Confidence 99999999999999999988888777777666655554443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0016 Score=59.96 Aligned_cols=132 Identities=19% Similarity=0.226 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH--HHHHHHhhHH----HHH-----HHHHHHHHHHhHhccc----chh
Q 016418 212 ISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV--SQILVLPLLN----PFV-----ALLASIAYALFYGLAW----ASW 276 (390)
Q Consensus 212 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~----~~~ 276 (390)
......+|+++.+|+++.+...+.....+...+ .-|.++|-+. ||+ +.++..++...+...+ +..
T Consensus 8 ~~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 8 SRLAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 344455688888999999988888777766653 5588999763 333 3333323333333322 222
Q ss_pred HH-HHHHHHHHHHhhhHHHHHHHHhhccC--CCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 277 VP-YLSASFGVIYVLVKPSTYAIISKASG--LNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 277 ~~-~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
.. .+.++..++.........+...|... ++.+|..++.......+|+.++..+.|.+.+.. +++..+
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f 157 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVF 157 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEe
Confidence 22 24466677777777777777776652 233788999999999999999999999999976 666544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0023 Score=58.87 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHH
Q 016418 240 IGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFI 315 (390)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 315 (390)
+.....-|.++|+++||. ......+......+.. +|.+. ..-...+.+.......++++|....++|....|+.
T Consensus 76 ~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll 153 (463)
T KOG2816|consen 76 LISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLL 153 (463)
T ss_pred HHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh-hcccccchhhhhhhhhhheeeccchhHHHHHHHHH
Confidence 333344488999999998 2222222222222222 22222 22223334456677788999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhc
Q 016418 316 AGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCACM 367 (390)
Q Consensus 316 ~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (390)
+.....+..++|.+++.+.... ++.. .+.+..+..++.......
T Consensus 154 ~~~~~~~~~~~p~~~~~~~~~~-~~a~-------~f~ia~~~~~~~~~y~~~ 197 (463)
T KOG2816|consen 154 SGTFGAGLVIGPALGGYLVKFL-GIAL-------VFLIAAASGILSLLYMLL 197 (463)
T ss_pred HHHHHHHHhHHHHHHHHHHHhc-CchH-------HHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999875 5444 446666666666555443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0023 Score=55.76 Aligned_cols=130 Identities=15% Similarity=0.032 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHHH-HH
Q 016418 210 SGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFYGLAWASWVPY-LS 281 (390)
Q Consensus 210 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~ 281 (390)
......+..-+....|.+..+..++.........+ .-+...|+++||+ ......+.-.+-...++...+. +-
T Consensus 94 ~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~ 173 (528)
T KOG0253|consen 94 MMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFR 173 (528)
T ss_pred HHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHH
Confidence 33444445555666666665666554433332222 3378899999999 3333333444444555554443 55
Q ss_pred HHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCC
Q 016418 282 ASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~ 342 (390)
.+.++|.|. .|...++-.|..|..+|+.-+-.. ....+|......+.=....++ |+++
T Consensus 174 ~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~-gwr~ 231 (528)
T KOG0253|consen 174 ALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF-GWRY 231 (528)
T ss_pred HHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-hHHH
Confidence 778888888 888889999999999998766655 777788887777766666655 4443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.016 Score=52.76 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=95.8
Q ss_pred cHHHHHH---hhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhHH--H
Q 016418 181 SMRDAAL---MVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLN--P 255 (390)
Q Consensus 181 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~ 255 (390)
+.++.++ .+.|-|++..+.+.....-.++..-......-+.|. |++.+..+.+..+.--..++. ++.+.|+. +
T Consensus 263 ~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEk-G~~KE~LAl~~li~~P~qii~-~~~~~Kws~g~ 340 (544)
T PF13000_consen 263 SIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEK-GLSKEDLALLVLIDFPFQIIL-PYYIGKWSAGS 340 (544)
T ss_pred hHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHc-CCCHHHhHHHHHHhhhHHHHH-HHHhhhhhcCC
Confidence 3444443 345688889898888888888888888888888777 999888776653332233333 23222221 0
Q ss_pred H-----------------------------H----HHH----HHHHHH-HhHhcccc----hhHHHHH----HHHHHHHh
Q 016418 256 F-----------------------------V----ALL----ASIAYA-LFYGLAWA----SWVPYLS----ASFGVIYV 289 (390)
Q Consensus 256 ~-----------------------------~----~~~----~~~~~~-~~~~~~~~----~~~~~~~----~~~g~~~~ 289 (390)
+ + ++. ...++. +...+..+ .+.+... .+..+...
T Consensus 341 ~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~st 420 (544)
T PF13000_consen 341 PPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMST 420 (544)
T ss_pred CccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 1 0 111 111111 11222211 1111111 33344455
Q ss_pred hhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 290 LVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
..+....++-+++.+|..-|+.+.+.|++.++|+---..+.=++.|.+
T Consensus 421 vmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 421 VMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 567888889999999999999999999999999887777777777765
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0022 Score=55.74 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHH
Q 016418 14 LLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTI 93 (390)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~ 93 (390)
.....+....+.....+..+.+..+. +.+.. . ...++..+.+.++..++.++.|.++||+|||+.+..+.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 80 (338)
T COG0477 7 LALAALLLGLDLGLLSPALPLLLSTL---SLSSG--R-LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFL 80 (338)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHc---CCCch--h-HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHH
Confidence 34445555566667777777776554 22221 0 234888999999999999999999999999988888887655
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHH
Q 016418 94 VPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIA 130 (390)
Q Consensus 94 i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~ 130 (390)
++.+...+..+ ...+.+++.|..+|+ +.+...+..
T Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~ 115 (338)
T COG0477 81 LGTLLLALAPN-VGLALLLILRLLQGL-GGGGLLPVA 115 (338)
T ss_pred HHHHHHHhCcc-chHHHHHHHHHHHHh-hhHHHHHHH
Confidence 55555555544 237889999999888 434444433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.002 Score=53.94 Aligned_cols=72 Identities=19% Similarity=0.076 Sum_probs=54.0
Q ss_pred chhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCc----hhhHHHHHHHHHHhh
Q 016418 48 SEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQ----EFVYAYYVLRTISYI 120 (390)
Q Consensus 48 ~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~----~~~~~l~~~r~l~G~ 120 (390)
+.++.+...+.+...+|..+ +++.|.+.||+|.|.++.++.+...++......+.+. ..+|.+.+...+.|.
T Consensus 33 ~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~ 108 (250)
T PF06813_consen 33 GYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGN 108 (250)
T ss_pred CCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcc
Confidence 33345557888888888876 5889999999999999999999999998776653211 126777776666666
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0066 Score=54.40 Aligned_cols=143 Identities=8% Similarity=-0.057 Sum_probs=78.4
Q ss_pred cchhHHHHHHHHHHHHhhh---HHHHHHHHHhhhcCCCchhHHHH---HHHHHHHHHHHHHHHHhhHHHHH----HHHHH
Q 016418 193 PTLRGISFVSFFYKLGMSG---ISAVLLFYLKAVFGFNKNQFSEI---LMMVGIGSIVSQILVLPLLNPFV----ALLAS 262 (390)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 262 (390)
|+-|..++...+..+.... .+.-...+.++.|| +....-++ +...++.-.+.+.|+.|+.|-|. +....
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln 119 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN 119 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence 3334444444444444311 12233345666667 44433344 34444444456688999999888 44444
Q ss_pred HHHHHhHhcccc------hh--HHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh
Q 016418 263 IAYALFYGLAWA------SW--VPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPL 333 (390)
Q Consensus 263 ~~~~~~~~~~~~------~~--~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l 333 (390)
+++..+=..+.. .+ ... ...+.+.........-.-+..-.+|+++|+.+..+..+.+.+|.++|..+...+
T Consensus 120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence 444443322222 22 111 112222222222222223445568999999999999999999999988888888
Q ss_pred hcc
Q 016418 334 TSW 336 (390)
Q Consensus 334 ~~~ 336 (390)
...
T Consensus 200 V~~ 202 (480)
T KOG2563|consen 200 VPS 202 (480)
T ss_pred cCC
Confidence 775
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.047 Score=42.13 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHh---cccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchh
Q 016418 234 ILMMVGIGSIVSQILVLPLLNPFVALLASIAYALFYG---LAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQG 309 (390)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 309 (390)
......+.. +....+.++++.|..+++..+.+.++. +-++.+.++ ...+.|++.+..+...-.++.+..+++.++
T Consensus 46 ~Y~~~~~s~-l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~ 124 (156)
T PF05978_consen 46 LYGSFAISC-LFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIG 124 (156)
T ss_pred HHHHHHHHH-HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHh
Confidence 334444444 344677889999885555555544433 233445555 668999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 310 KAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 310 ~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
+-.|+.-.+...+..+|....-.+.+
T Consensus 125 ~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 125 RNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988888888777655544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0022 Score=42.85 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH
Q 016418 196 RGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV 257 (390)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~ 257 (390)
+.+-..+++...+.+....++|.|+++. |.|+.++|.+.++.-+...+ ..+.++||.+|++
T Consensus 3 ~~lk~~yf~~f~~~g~~~Pfl~~~~~~~-Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 3 LPLKAFYFFYFAALGCLYPFLPLYLKQL-GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHhhhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 3455667778888899999999999985 99999999998776655553 4588999999887
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0068 Score=51.35 Aligned_cols=270 Identities=15% Similarity=0.076 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 55 GLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 55 g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
|.+.-+-.+..++..+..-...||+.--.-.....++.+.+..+.+++++ .++-+.+..+..+ ++|..-..-.++-
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s---~~~sL~GV~~aSi-ssGlGEiTFL~ls 140 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNS---VPMSLLGVVFASI-SSGLGEITFLALS 140 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccc---hhHHHhhhhhhhh-cCCcceeehhhhh
Confidence 66667777788888788888899875433344456667777888888888 6766666666655 3333221111111
Q ss_pred ------------------------------------------HHHHHHHHHHHHHHHhcccCCCCCccc--ccccc-cc-
Q 016418 135 ------------------------------------------VSIALLIFVPVYMQFFLVETVESAPRK--DQESS-GL- 168 (390)
Q Consensus 135 ------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~-~~- 168 (390)
+...++++.....++.+++++...... +..+. ++
T Consensus 141 s~Y~~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~~~~~~ 220 (409)
T KOG3880|consen 141 SRYPSIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTEIIPSQ 220 (409)
T ss_pred ccCCCceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCccceeccCC
Confidence 445555555555555565544332110 00000 00
Q ss_pred -----cccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhh--hcCCCch---hHHHHHHHH
Q 016418 169 -----KKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKA--VFGFNKN---QFSEILMMV 238 (390)
Q Consensus 169 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~---~~g~~~~~~ 238 (390)
..+.+...+.....+|.++.+ +++...++-....+++.+.++.-+...+.- ..|.+-. +.-+.....
T Consensus 221 ~~~~~a~e~~sv~s~~~~~~e~~~~i---~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvlY 297 (409)
T KOG3880|consen 221 YLPFEAAEEKSVPSRRLGLKETLKRI---KPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVLY 297 (409)
T ss_pred CCcccccccccCchhhhcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhheee
Confidence 000010111223444444333 233334444445555554444433332211 1133221 222332222
Q ss_pred HHHHHHHHHHHHhhH---HHHH-------HHHHHHHHHHhHhcccchhHHHHH-HHHHHHHhhhHHHHHHHHhhccCCCc
Q 016418 239 GIGSIVSQILVLPLL---NPFV-------ALLASIAYALFYGLAWASWVPYLS-ASFGVIYVLVKPSTYAIISKASGLNN 307 (390)
Q Consensus 239 ~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 307 (390)
.++..+.. -+-++ ..-+ --.+..+.-..+.+.++.|...+. +.=|+..|..+....--+.+..++++
T Consensus 298 QlGVFiSR--SS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~ 375 (409)
T KOG3880|consen 298 QLGVFISR--SSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDV 375 (409)
T ss_pred eeeEEEEe--ccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchH
Confidence 22111100 00000 0000 111122223345566777766643 44577777777777777778788899
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhh
Q 016418 308 QGKAQGFIAGVQSISSLLSPLAMSPL 333 (390)
Q Consensus 308 ~g~~~g~~~~~~~~~~~~g~~~~g~l 333 (390)
|--+++......++|..++..++=.+
T Consensus 376 rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 376 REFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHhHhhheecchhhHHHHHHHhccc
Confidence 99999998888888877665554443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0024 Score=58.35 Aligned_cols=110 Identities=11% Similarity=0.191 Sum_probs=91.3
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHH
Q 016418 13 HLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTT 92 (390)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~ 92 (390)
.+++...+.+.+.+.+...+=++++|. +..+ ..-|........+-++.-++.+++..|+|+-+++..++.+.
T Consensus 375 lff~~av~mG~g~~lv~tFLfWHled~---~~~~-----~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~ 446 (618)
T KOG3762|consen 375 LFFFVAVVMGAGVGLVFTFLFWHLEDL---GGIK-----TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACN 446 (618)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhhc---CCcc-----eeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHH
Confidence 355666677777888888887777665 3322 33477777778888888899999999999999999999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 93 IVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 93 ~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
.+=.+...+.+| .|+.+...+++|+ ..+..+....+|+
T Consensus 447 ~~Rf~~~S~L~n---~W~vLPieilqgi-t~aliWaa~~sY~ 484 (618)
T KOG3762|consen 447 VGRFLYYSYLQN---PWMVLPIEILQGI-THALIWAAIISYA 484 (618)
T ss_pred HHHHHHHHHhcC---chheeeHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999999 9999999999999 6688888888888
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.089 Score=47.42 Aligned_cols=127 Identities=14% Similarity=0.115 Sum_probs=86.7
Q ss_pred HhhhHHHHHHHHHhhh-cCCCchhHHHH----HHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccchhHH
Q 016418 208 GMSGISAVLLFYLKAV-FGFNKNQFSEI----LMMVGIGSIVSQILVLPLLNPFV----ALLASIAYALFYGLAWASWVP 278 (390)
Q Consensus 208 ~~~~~~~~~~~~~~~~-~g~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 278 (390)
-+--..+++..|+.+. .|++..++.-- .+-..+...+....+.|.++.|. +.+...+...++.+.++.+.+
T Consensus 18 ~frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~m 97 (412)
T PF01770_consen 18 EFRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAM 97 (412)
T ss_pred hcCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHH
Confidence 3445678888888775 68887765421 22233444455578899999988 333333444455566665554
Q ss_pred H-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 279 Y-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 279 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
- .-+..|...+. ..+.++++-..+|+++--++.+......-+|..++..++-.+..
T Consensus 98 q~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 98 QLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred HHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 45677776665 55667888888898888999999999888888888887776665
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00013 Score=68.77 Aligned_cols=130 Identities=17% Similarity=0.050 Sum_probs=2.7
Q ss_pred HHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHH---HHHHhhHHHHH----HHHHHHHHHHhHhccc------
Q 016418 207 LGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQ---ILVLPLLNPFV----ALLASIAYALFYGLAW------ 273 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~------ 273 (390)
....++....-.-++++|+++..+.|++.+..-+...+.. .++.+|-.|-+ +.++.+++.+++...+
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y 95 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPY 95 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence 4444444444456678899999999999887776666543 33444432222 6666666655544311
Q ss_pred ----------------------------------------c---h-hHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCch
Q 016418 274 ----------------------------------------A---S-WVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQ 308 (390)
Q Consensus 274 ----------------------------------------~---~-~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 308 (390)
+ . +.++ ..++.|+|....++...+++-|.+++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s 175 (539)
T PF03137_consen 96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS 175 (539)
T ss_dssp --------------------------------------------------------SSS---------------------
T ss_pred ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence 0 0 1111 33677888888999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 309 GKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 309 g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
+...|+......+|-++|-.++|.....
T Consensus 176 plYiGi~~~~~~lGPa~Gf~lg~~~L~~ 203 (539)
T PF03137_consen 176 PLYIGILYAMSILGPALGFLLGSFCLRI 203 (539)
T ss_dssp ----------------------------
T ss_pred ccchhhhhHHhhccHHHHHHHHHHHHhc
Confidence 9999999999999999888888877754
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.14 Score=47.53 Aligned_cols=42 Identities=2% Similarity=0.096 Sum_probs=38.5
Q ss_pred HHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 294 STYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 294 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
..+++++|....++..|-+++.....++|..+|+.+..++.+
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999998888774
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.087 Score=47.11 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhh
Q 016418 274 ASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLA 329 (390)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~ 329 (390)
..|......++|+..|-.....+.+..+.+|++++-.+-.+....-..|...|..+
T Consensus 343 ~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 343 DGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred chHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34555577899999999999999999999987777665555555555555544433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.21 Score=48.58 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhHhhhhcccccc-cCCchHHHHHHHHHHHHHHHHHhc
Q 016418 55 GLQQTVVGVFKMVVLPLLGQLADE-YGRKPLLLITVSTTIVPFTLLAFN 102 (390)
Q Consensus 55 g~~~~~~~~~~~~~~~~~G~l~Dr-~Grk~~l~~~~~~~~i~~~~~~~~ 102 (390)
..+...+....-+...++|.++|+ +||++.+..+.++..++..+.++.
T Consensus 26 ~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~ 74 (654)
T TIGR00926 26 TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG 74 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666666778889999996 599999999999999998877764
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.058 Score=45.54 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=59.0
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHH
Q 016418 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLIT 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~ 88 (390)
..++.+....+.....+.=....-|.+.++.+ |.++ ...|-+.+.-....+..+|+.|.++||+||+...+.+
T Consensus 264 ppfw~~~iicv~yyva~fPFi~lg~~fF~~rf--GlS~-----~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~ 336 (459)
T KOG4686|consen 264 PPFWVLVIICVLYYVAWFPFITLGPMFFQKRF--GLSA-----VSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS 336 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh--CCCh-----hhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence 35666666666666665555555566666655 5544 4447777888888899999999999999999776655
Q ss_pred H-HHHHHHHHHHHhc
Q 016418 89 V-STTIVPFTLLAFN 102 (390)
Q Consensus 89 ~-~~~~i~~~~~~~~ 102 (390)
. +...++.....+.
T Consensus 337 a~~~tl~~H~~l~Ft 351 (459)
T KOG4686|consen 337 ACILTLLGHSGLFFT 351 (459)
T ss_pred HHHHHHHHhhhHHhh
Confidence 4 4445555555543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.093 Score=40.53 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=56.0
Q ss_pred HHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 59 TVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 59 ~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
++......+++++.+.+.++.|.|+.++++.+...+-.... +-++ .+.++..-.+.|+ +.+..+.....++
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~---~~~l~~~s~l~G~-~~a~lW~aqg~yl 114 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPN---SYTLYPASALLGF-GAALLWTAQGTYL 114 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhh---HHHHHHHHHHHhh-hhHHhhHhhhHHH
Confidence 45556666777777888999999999999999988665554 4556 7889999999999 7678887766666
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.2 Score=47.33 Aligned_cols=136 Identities=17% Similarity=0.136 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhHHHHH---------HHHH-HHHHH-
Q 016418 198 ISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLLNPFV---------ALLA-SIAYA- 266 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~- 266 (390)
+....++..++...+...+.-.+...+|-+....+.+.++.-.+..++ .++..|+.|+. ...+ ..++.
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalG-s~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ 97 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVG-ALLSKYLLRDAAAGFVAVELLLALLGGLSAL 97 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666667777777777777877777666655543333333 45555554332 1100 00111
Q ss_pred HhH---hcccchhH-HH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 267 LFY---GLAWASWV-PY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 267 ~~~---~~~~~~~~-~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
++. .+...... .+ ..++.++..|+..|....+..+... ++.|+..|-....+.+|+.+|+++.+++.-
T Consensus 98 ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 98 ILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 111 11101111 11 3355677788888887776655332 345677888888899999999999888765
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0066 Score=50.05 Aligned_cols=294 Identities=13% Similarity=0.114 Sum_probs=147.9
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhccccc---------cc
Q 016418 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLAD---------EY 79 (390)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~D---------r~ 79 (390)
...+..-.+.++..+..+.....+-.++.+. |.++.+. ..++-...+..++..|+.|..+| |+
T Consensus 17 ~svf~yGvGHmlNDitAScWFTYlllfltqi---glsp~~~-----AmlML~GQVtda~st~ftGi~~d~nll~~~idr~ 88 (412)
T KOG4830|consen 17 TSVFAYGVGHMLNDITASCWFTYLLLFLTQI---GLSPSSR-----AMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRI 88 (412)
T ss_pred eeeeeechhHHHhhHHHHHHHHHHHHHHHHh---cCCcchh-----HHHHHhhHHHHHHhcccccccccccccHHHhhhh
Confidence 3445556778888888888888888787665 5555333 46667777888888999886654 89
Q ss_pred CCchH-HHHHHHHHHHHH-HHHHhc--------cCc-hhhHHHHHHHHHHhhcccchHHHHHHHHH-HHHHHHHHHHHH-
Q 016418 80 GRKPL-LLITVSTTIVPF-TLLAFN--------QSQ-EFVYAYYVLRTISYIISQGSIFCIAVAYA-VSIALLIFVPVY- 146 (390)
Q Consensus 80 Grk~~-l~~~~~~~~i~~-~~~~~~--------~~~-~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-~~~~~~~~~~~~- 146 (390)
|||+. -.++.++..++. ....++ .+. ....++.+.-.+.|+ +.+..--...+.+ ..+-..+...+.
T Consensus 89 G~~~~wh~~gt~lVslSf~~ifg~a~iF~~~~~~s~vanlglyaialvVFgv-~~A~~ke~tea~~R~~~~~~v~lG~~~ 167 (412)
T KOG4830|consen 89 GRRMSWHLIGTVLVSLSFPMIFGFAKIFLCKSTTSEVANLGLYAIALVVFGV-GWASVKESTEALIRLAGWLVVVLGITV 167 (412)
T ss_pred cceeeeeecccEEEEEechhhcCceeEEeeccHHHHHHHhHHHHHHhheeee-eeecccccHHHHHHHhhhheeeeceeE
Confidence 98764 344443333221 111111 110 002233333344444 2222211222222 222111111110
Q ss_pred ---HHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 016418 147 ---MQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAV 223 (390)
Q Consensus 147 ---~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (390)
...+-+|+...-..++ .+..+-.|..-+++-.+....+.+.+.-...+....++++|..+.
T Consensus 168 ~~vF~~~TrEP~~~~~~~~----------------s~~~Rm~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfvidd 231 (412)
T KOG4830|consen 168 AFVFYAFTREPTNSFSSDA----------------SELVRMHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDD 231 (412)
T ss_pred EEEEeecccCcccccCcch----------------hhhhcccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeeh
Confidence 0111122211100000 001122234445566777788888888888888889999998887
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHH--HhhHHHHH------HHHHHHHHHHhHh-cccchh--HHHHHHHHHHHHhhhH
Q 016418 224 FGFNKNQFSEILMMVGIGSIVSQILV--LPLLNPFV------ALLASIAYALFYG-LAWASW--VPYLSASFGVIYVLVK 292 (390)
Q Consensus 224 ~g~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~-~~~~~~--~~~~~~~~g~~~~~~~ 292 (390)
.+++....+++-.+.-+.+...+... .++-++|. +.+....+...+. ..++.- ......+.|+..+...
T Consensus 232 lqm~qsakAllP~v~Yl~SF~VS~v~~eipwngkrlKayYsaGgiiwifcga~ilLlpr~i~symyAisvfIGIAnAiml 311 (412)
T KOG4830|consen 232 LQMEQSAKALLPMVAYLSSFSVSMVNSEIPWNGKRLKAYYSAGGIIWIFCGAVILLLPRGIKSYMYAISVFIGIANAIML 311 (412)
T ss_pred hhHHHHHhhhhHHHHHHhhhhHHhhcccCCcCcceeeeeeecccHHHHHhhhheeecccchHHHHHHHHHHHHHHHHHHH
Confidence 77776665555444444443333222 22333333 3333333222222 222222 2224567788888766
Q ss_pred HHHHHHHhhccCCC--chhhHHHHHHHHHHHHHhhhh
Q 016418 293 PSTYAIISKASGLN--NQGKAQGFIAGVQSISSLLSP 327 (390)
Q Consensus 293 ~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~~~~~g~ 327 (390)
....++.+.....+ ..+-..|-.+.+..+...++-
T Consensus 312 vtslsitavli~~~~~~~aFv~GamSF~DKlS~GiA~ 348 (412)
T KOG4830|consen 312 VTSLSITAVLINKNTESGAFVYGAMSFFDKLSNGIAY 348 (412)
T ss_pred HHHHHHHHHHhhcccCCceEEEehHHHHHhhcccHHH
Confidence 66666666555543 334455666777666665443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.59 Score=43.15 Aligned_cols=52 Identities=10% Similarity=0.071 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhh
Q 016418 278 PYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLA 329 (390)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~ 329 (390)
.+..+++|+..|......+.+..+.+++++|..+-.+....-.+|-.+|..+
T Consensus 376 ~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 376 IILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477889999999989888899999998888888887777778787777665
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.023 Score=54.71 Aligned_cols=181 Identities=12% Similarity=0.064 Sum_probs=113.4
Q ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHH---HHHHhhHHHHH----HHHHHHHH
Q 016418 193 PTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQ---ILVLPLLNPFV----ALLASIAY 265 (390)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~ 265 (390)
+.+..++....+......++....-.-++++++++..+.|++.+..-+...+.. .+...|..|-+ +.++.+++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 333333333333333333444444455678899998888877655444444332 33444443333 66666666
Q ss_pred HHhHhccc-------------------------------------------------c--hhHHH--HHHHHHHHHhhhH
Q 016418 266 ALFYGLAW-------------------------------------------------A--SWVPY--LSASFGVIYVLVK 292 (390)
Q Consensus 266 ~~~~~~~~-------------------------------------------------~--~~~~~--~~~~~g~~~~~~~ 292 (390)
.++..+.+ + +|.++ ..++.|+|....+
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 65554320 0 23222 3367888888899
Q ss_pred HHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC-CCCC-------CCCc---hHHHHHHHHHHHH
Q 016418 293 PSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLST-DAPF-------NCKG---FSIIVASICLMVS 361 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~-~~~~-------~~~~---~~~~~~~~~~~~~ 361 (390)
+...+++-|.+.+++.....|+..++..+|=++|-.+++.....+.+. ..+- .|.| +-|++++.+.++.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888887665343 1110 1111 2567777777777
Q ss_pred HHhhhccccccC
Q 016418 362 LSCACMLDTEEN 373 (390)
Q Consensus 362 ~~~~~~~~~~~~ 373 (390)
.+..+++++..+
T Consensus 336 a~p~f~fPk~lp 347 (735)
T KOG3626|consen 336 AVPLFFFPKELP 347 (735)
T ss_pred HHHHHhCcccCc
Confidence 777776665544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.11 Score=45.88 Aligned_cols=135 Identities=10% Similarity=-0.010 Sum_probs=73.7
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH-HHHHHHHh-----hHHHHH-----HHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI-VSQILVLP-----LLNPFV-----ALL 260 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~-~~~~~~~~-----~~~~~~-----~~~ 260 (390)
.+++..+...+.......+... .+|..++.. |.|-...+......---+. +.-..+.| |+|||+ +..
T Consensus 30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak-~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ 107 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAK-GVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQY 107 (510)
T ss_pred hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCC-CcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence 4556666666777666666555 888888855 6666655544322221111 23334455 899988 444
Q ss_pred HHHHHHHhHhcccc---------hhHHH---HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhh
Q 016418 261 ASIAYALFYGLAWA---------SWVPY---LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPL 328 (390)
Q Consensus 261 ~~~~~~~~~~~~~~---------~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~ 328 (390)
..+..+..+....+ +.... ..+++-+..+.--.+...+.-....+++.|-+........+.|.++|..
T Consensus 108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ 187 (510)
T KOG3574|consen 108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV 187 (510)
T ss_pred HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence 43333333333221 11111 2244455555555566667767777788777766555555555554433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.1 Score=41.91 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=54.8
Q ss_pred ccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhH----HHHHHHHHHHHHHHHHHHHh
Q 016418 176 DRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQF----SEILMMVGIGSIVSQILVLP 251 (390)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----g~~~~~~~~~~~~~~~~~~~ 251 (390)
.+++.+.+|.++.+.++|.+..+.+...+.....+.++..+-..+++.+. ++.+. |-.....|+...+.. .++.
T Consensus 263 ~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysafmG~~~~~tGivtii~~-~l~~ 340 (491)
T PF03219_consen 263 KKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSAFMGKFSSWTGIVTIIMM-FLSS 340 (491)
T ss_pred cCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34456889999999999999999999888888888888888777777654 44442 223344455554443 4445
Q ss_pred hHHHHH
Q 016418 252 LLNPFV 257 (390)
Q Consensus 252 ~~~~~~ 257 (390)
++-||.
T Consensus 341 ~iir~~ 346 (491)
T PF03219_consen 341 NIIRRF 346 (491)
T ss_pred HHHHHh
Confidence 544444
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.34 Score=41.80 Aligned_cols=129 Identities=18% Similarity=0.092 Sum_probs=80.1
Q ss_pred HHhhhHHHHHHHHHhhhcCCCc--hhHHHHHHHHHHHH---HHHHHHHHhhHHHHH----HHHHHHHHHHhHhcccc--h
Q 016418 207 LGMSGISAVLLFYLKAVFGFNK--NQFSEILMMVGIGS---IVSQILVLPLLNPFV----ALLASIAYALFYGLAWA--S 275 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~--~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~ 275 (390)
..........+.+..+. +.+. ...+.......+.. ....+.+.||.+||. +......+.+......+ .
T Consensus 16 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
T COG0477 16 LDLGLLSPALPLLLSTL-SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGL 94 (338)
T ss_pred HhcchHHHHHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchH
Confidence 44444455555555554 3333 23444443333222 245588889888776 22222333334444443 3
Q ss_pred hHHH-HHHHHHHHHhhhHHHHHHHHhhccCC-CchhhHHHHHHH-HHHHHHhhhhhhhhhhhcc
Q 016418 276 WVPY-LSASFGVIYVLVKPSTYAIISKASGL-NNQGKAQGFIAG-VQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 276 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~-~~~~~~~~g~~~~g~l~~~ 336 (390)
+... .....|++.+...+...++..+..|+ ++|+...+.... ....+..++|.+.+.+.+.
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 33447888888889999999999997 678888888888 5778888888777777765
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.78 Score=42.09 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=76.9
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHH---HHHHHhhHHHHH-----------HH
Q 016418 194 TLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVS---QILVLPLLNPFV-----------AL 259 (390)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~-----------~~ 259 (390)
..+.+....++.....-......+.++.+.+.-+-...+..-...++..++. -|...||..|.+ +.
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence 3466788888888898889999999998886544332222222222333332 256677776665 22
Q ss_pred HHHHHHHHhHh-ccc----chhHHHHHH----HHHHHHhhhHHHHHH-----HHhhcc--CCCchhhHHHHHHHHHHHHH
Q 016418 260 LASIAYALFYG-LAW----ASWVPYLSA----SFGVIYVLVKPSTYA-----IISKAS--GLNNQGKAQGFIAGVQSISS 323 (390)
Q Consensus 260 ~~~~~~~~~~~-~~~----~~~~~~~~~----~~g~~~~~~~~~~~~-----~~~~~~--~~~~~g~~~g~~~~~~~~~~ 323 (390)
...+..+.... ... +.+.....+ +.+...-........ ++..+. +++...+..+...-+.-...
T Consensus 83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck 162 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK 162 (432)
T ss_pred HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence 33332222222 211 123222221 122211112111111 222233 33445566666666667799
Q ss_pred hhhhhhhhhhhccc
Q 016418 324 LLSPLAMSPLTSWF 337 (390)
Q Consensus 324 ~~g~~~~g~l~~~~ 337 (390)
.++|.+.|.+.+..
T Consensus 163 llaPl~vG~l~t~~ 176 (432)
T PF06963_consen 163 LLAPLFVGLLMTFA 176 (432)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999999865
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.14 Score=46.24 Aligned_cols=83 Identities=13% Similarity=0.015 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhccCCC---chhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHH
Q 016418 280 LSASFGVIYVLVKPSTYAIISKASGLN---NQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASI 356 (390)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (390)
...+.++|.|..-|...++..|.++++ ++.+.+..+....++|..+++...+++-+.. ++.. .|.+.++
T Consensus 39 gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~-~~~~-------~f~i~~~ 110 (372)
T PF00854_consen 39 GLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY-GWFL-------GFGIPAI 110 (372)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHH-------HHHHHHH
T ss_pred HHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhcccc-chhh-------hhhHHHH
Confidence 557789999999999999999999866 3466777888899999999999999998755 5544 4566777
Q ss_pred HHHHHHHhhhcccc
Q 016418 357 CLMVSLSCACMLDT 370 (390)
Q Consensus 357 ~~~~~~~~~~~~~~ 370 (390)
..+++.+..+..++
T Consensus 111 ~~~~~~~~f~~~~~ 124 (372)
T PF00854_consen 111 GMLLALIVFLSGRK 124 (372)
T ss_dssp HHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHhCCc
Confidence 77777666655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.15 E-value=2.6 Score=38.85 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=52.3
Q ss_pred cccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchh---HHHHHHHHHHHHHHHHHHHHhhH
Q 016418 177 RRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQ---FSEILMMVGIGSIVSQILVLPLL 253 (390)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~ 253 (390)
+.+..+.+.++.+.++|.++.+.+...+.+.+.+.+...+-.-.++.+..+... .|.+....|+...+........+
T Consensus 266 k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ 345 (509)
T COG3202 266 KLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNL 345 (509)
T ss_pred cccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344578889999999999999998888888888877776666555554333222 23334455555455444555555
Q ss_pred HHHH
Q 016418 254 NPFV 257 (390)
Q Consensus 254 ~~~~ 257 (390)
-||.
T Consensus 346 ir~~ 349 (509)
T COG3202 346 IRRV 349 (509)
T ss_pred HHHh
Confidence 5554
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.11 E-value=3.3 Score=39.72 Aligned_cols=57 Identities=11% Similarity=0.005 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 280 LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
-.+++|++.........-+.-+.+|++.|+.++++......+|..++..+.......
T Consensus 464 QyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~ 520 (571)
T KOG1237|consen 464 QYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFS 520 (571)
T ss_pred HHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447889999998888888888899999999999999999999999998888766554
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.8 Score=38.48 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=57.3
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLI 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~ 87 (390)
++..+.++++.++...+.-+.-.....++.+. +.++.-.. ..-..+-....++..++.|...|+..|+|++..
T Consensus 26 s~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L---~gnsl~lv----Avyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~ 98 (503)
T KOG2601|consen 26 SSTVIFLYLGYFLTTWGDRMWEFSVSLFMILL---GGNSLLLV----AVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQT 98 (503)
T ss_pred cceeehhhHHHHHhHhhHhHHHHHHHHHHHHH---cCceehhH----HHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHH
Confidence 45567788889999999888888888888666 44443332 233334445667788899999999999999887
Q ss_pred HHHHHHH
Q 016418 88 TVSTTIV 94 (390)
Q Consensus 88 ~~~~~~i 94 (390)
.+.+.-+
T Consensus 99 ~L~lqNl 105 (503)
T KOG2601|consen 99 WLLLQNL 105 (503)
T ss_pred HHhhccH
Confidence 7655433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.14 Score=46.26 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=90.5
Q ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHH---HHHHhh----HHHHH-----HHH
Q 016418 193 PTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQ---ILVLPL----LNPFV-----ALL 260 (390)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~----~~~~~-----~~~ 260 (390)
+.+.......+...+++..-.++.++|+++. |.+....+.+....-+.+.+.+ |..+|| +|||+ +..
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSL-GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHc-CCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 3445555666667788888889999999876 8888877777766556666543 677785 56666 333
Q ss_pred HHHHHHHhHhcccc----------h----hHHH-H--H-HHHHHHHhhhHHHHHHHHhhccCCCchhh-HHHHHHHHHHH
Q 016418 261 ASIAYALFYGLAWA----------S----WVPY-L--S-ASFGVIYVLVKPSTYAIISKASGLNNQGK-AQGFIAGVQSI 321 (390)
Q Consensus 261 ~~~~~~~~~~~~~~----------~----~~~~-~--~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~~ 321 (390)
...+++.++.++.+ . +... . . -+.-+..........+++.|...++++-+ +.+....+..+
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av 190 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV 190 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence 34444445444321 1 1111 1 1 12333444556667889999988777777 99999999999
Q ss_pred HHhhhhhhhh
Q 016418 322 SSLLSPLAMS 331 (390)
Q Consensus 322 ~~~~g~~~~g 331 (390)
|+.+|-.+++
T Consensus 191 GnvLGY~~g~ 200 (498)
T KOG0637|consen 191 GNVLGYALGS 200 (498)
T ss_pred cceeeeeccc
Confidence 9988777665
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.9 Score=29.30 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=44.9
Q ss_pred HhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHH---HHHHHhhHHHHH----HHHHHHHHHHhHhcccchhH
Q 016418 208 GMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVS---QILVLPLLNPFV----ALLASIAYALFYGLAWASWV 277 (390)
Q Consensus 208 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 277 (390)
+-..+...+|...+|. ++|..+.|++-+...++..+. ..++.++..++. +++...+....+++.++.+.
T Consensus 7 gRFayTplLP~M~~~~-~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~ 82 (85)
T PF06779_consen 7 GRFAYTPLLPLMQADG-GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL 82 (85)
T ss_pred HHHHHHhHhHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3445667788777766 999999999887766555443 233333333233 77777777777777776543
|
Note that many members are hypothetical proteins. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=88.43 E-value=16 Score=33.25 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=49.9
Q ss_pred HHHHHHHhhHH--HHH--HHHHHHHHHHhHhcccchhHHHH-HHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHH
Q 016418 244 VSQILVLPLLN--PFV--ALLASIAYALFYGLAWASWVPYL-SASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGV 318 (390)
Q Consensus 244 ~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 318 (390)
+...++.+|+. .|. ...+..+++++.+++++.+.-++ ..+.+++.+..-.....+.. .+|+. ..+-..+.
T Consensus 77 l~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~~----~l~~wssG 151 (402)
T PF02487_consen 77 LIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGKS----SLSAWSSG 151 (402)
T ss_pred HHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCcc----ccccccCC
Confidence 34455555543 333 66777788888888888776653 35566666665555555544 45532 23444445
Q ss_pred HHHHHhhhhhhhhhhhc
Q 016418 319 QSISSLLSPLAMSPLTS 335 (390)
Q Consensus 319 ~~~~~~~g~~~~g~l~~ 335 (390)
.+.++.+|+...-.+.+
T Consensus 152 TG~aGl~Ga~~y~~lT~ 168 (402)
T PF02487_consen 152 TGGAGLVGALYYLGLTT 168 (402)
T ss_pred cChhhHHHHHHHHHHHH
Confidence 55556666555544443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=88.27 E-value=23 Score=33.40 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=37.5
Q ss_pred HHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 294 STYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 294 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
..+.+.+|..+.++..|.+++.....++|..++..+...+.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999988888877776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.95 E-value=11 Score=35.03 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=69.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhHhc---ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHH
Q 016418 244 VSQILVLPLLNPFVALLASIAYALFYGL---AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQ 319 (390)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 319 (390)
+..+-+.++++.|..+++.+.++..+.. -.|.+..+ ...+.|+|.+..+...-.++++..+++...+..++.-.+.
T Consensus 68 l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~ 147 (461)
T KOG3098|consen 68 LFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIG 147 (461)
T ss_pred HhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHH
Confidence 3446778889999855555555444332 23455555 6689999999988888889999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhcc
Q 016418 320 SISSLLSPLAMSPLTSW 336 (390)
Q Consensus 320 ~~~~~~g~~~~g~l~~~ 336 (390)
..+..+|....-.+...
T Consensus 148 ~~~li~Ggi~l~~~~~~ 164 (461)
T KOG3098|consen 148 QSSLIIGGIILFIYFQF 164 (461)
T ss_pred HHHHHhhhHhheeeeEe
Confidence 98888876665555443
|
|
| >PRK11588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.69 E-value=26 Score=32.94 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=15.4
Q ss_pred hcCCCchhHHHHHHHHHHHHHHH
Q 016418 223 VFGFNKNQFSEILMMVGIGSIVS 245 (390)
Q Consensus 223 ~~g~~~~~~g~~~~~~~~~~~~~ 245 (390)
.+||...+.+.++...++...+.
T Consensus 306 ~~gW~~~Eia~~Fl~~giv~G~i 328 (506)
T PRK11588 306 VNAWFIPEIASQFFTMGLVIGLI 328 (506)
T ss_pred cccccHHHHHHHHHHHHHHHHHh
Confidence 35777777777777666665554
|
|
| >TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype | Back alignment and domain information |
|---|
Probab=85.92 E-value=28 Score=31.86 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=23.9
Q ss_pred HHHhHhhhhcccccccCCchHHHHHHHHHHHHH
Q 016418 64 FKMVVLPLLGQLADEYGRKPLLLITVSTTIVPF 96 (390)
Q Consensus 64 ~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~ 96 (390)
.....+++.|-.++|..-+..++.+.+...+-+
T Consensus 110 a~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY 142 (404)
T TIGR03644 110 VATAMSIVSGAVAERMKLWPFLLFAVVLTGFIY 142 (404)
T ss_pred HHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHH
Confidence 444456788999999988888887776655433
|
Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment. |
| >PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=85.68 E-value=3 Score=28.82 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhhccccccC----CCCCCcccccCCCCC
Q 016418 350 SIIVASICLMVSLSCACMLDTEEN----STNDEREDIEEPLIS 388 (390)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 388 (390)
.|.+.+++.+.+..........++ +..+.+|.|++|+++
T Consensus 55 AFvI~avlfv~sl~vav~~~~~r~~~~r~~~~~~d~EraPLLn 97 (97)
T PF08611_consen 55 AFVIAAVLFVLSLVVAVPKWTGRDAFFRREAESTDRERAPLLN 97 (97)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccchhhhcccCCCccccccccC
Confidence 667778777776665543222221 222356777888764
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.30 E-value=12 Score=26.49 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=30.0
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 305 LNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 305 ~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
++.++.++++--....+++.+-....|++.|++ -.+.|+
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~-agTsPw 75 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKF-AGTSPW 75 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcH
Confidence 355677888877888888888888899999998 444554
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.55 E-value=4.7 Score=34.22 Aligned_cols=118 Identities=11% Similarity=0.003 Sum_probs=60.6
Q ss_pred HHhhhcCCCchhHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHh---cccchhHHH-HHHHHHHHHhh
Q 016418 219 YLKAVFGFNKNQFSEILMMV----GIGSIVSQILVLPLLNPFVALLASIAYALFYG---LAWASWVPY-LSASFGVIYVL 290 (390)
Q Consensus 219 ~~~~~~g~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~g~~~~~ 290 (390)
|+-+.+|+...++|.++... .+.+.+. +-+.||.|||++.+...+.+.+.- .++++-.++ .-.+-|+....
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtiv-gSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsL 140 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIV-GSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSL 140 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHH-HHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHH
Confidence 44556688888777665221 1223333 678999999993333333333322 233333333 44666777777
Q ss_pred hHHHHHHH-HhhccCCCc-----hhhHHHHHH-HHHHHHHhhhhhhhhhhhccc
Q 016418 291 VKPSTYAI-ISKASGLNN-----QGKAQGFIA-GVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 291 ~~~~~~~~-~~~~~~~~~-----~g~~~g~~~-~~~~~~~~~g~~~~g~l~~~~ 337 (390)
.+...-++ +.|...++. ....++=.. ..+.+-.+++...+..+.|++
T Consensus 141 LFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~ 194 (454)
T KOG4332|consen 141 LFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF 194 (454)
T ss_pred HHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 77766664 455553221 122222222 223344455555555666665
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=80.49 E-value=18 Score=33.84 Aligned_cols=61 Identities=7% Similarity=-0.018 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhh--hcCCCchhHHHHH------HHHHHHHHHHHHHHHhhHHHHH
Q 016418 196 RGISFVSFFYKLGMSGISAVLLFYLKA--VFGFNKNQFSEIL------MMVGIGSIVSQILVLPLLNPFV 257 (390)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~ 257 (390)
..+.+.+++.....+......|..+++ . +.+-.+.|.+. +.=-+=+=+.-....+|+|||+
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~-~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRK 71 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAK-KVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRK 71 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccC-CCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcc
Confidence 345566666666666555678888887 3 45555544432 1111111123356678899998
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.28 E-value=6.2 Score=27.80 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhccccccc-CCchHHHHHHHHH
Q 016418 53 ISGLQQTVVGVFKMVVLPLLGQLADEY-GRKPLLLITVSTT 92 (390)
Q Consensus 53 ~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grk~~l~~~~~~~ 92 (390)
..+.-.+.-+++..+.....||+.||| |-+|+.++..++.
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lll 83 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLL 83 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 335555667777778888889999997 6676655544433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.94 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.89 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.52 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.51 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.49 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.45 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.43 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.87 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.78 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-31 Score=242.81 Aligned_cols=337 Identities=13% Similarity=0.058 Sum_probs=241.0
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHH
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITV 89 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~ 89 (390)
.+..+....+...+..+...+.+|.+.++ . .+..+.|++.+++.++..++++++|+++||+|||+++..+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQ--------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTTSS--------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 34455566666666767777888866522 2 33455699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----ccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------
Q 016418 90 STTIVPFTLLAF----NQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------- 134 (390)
Q Consensus 90 ~~~~i~~~~~~~----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------- 134 (390)
++.+++.+++++ +++ ++.++++|+++|+ +.+...+...+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHH-HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 899 9999999999999 5566667777777
Q ss_pred ---------------HHHHHHHHHHHHHHHhcccCCCCCccccccccccc--ccccccccccccHHHH-HHhhhcCcchh
Q 016418 135 ---------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLK--KAVNVLDRRYKSMRDA-ALMVVSSPTLR 196 (390)
Q Consensus 135 ---------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 196 (390)
+.+++.++..++.++.+||++++.+.++.++.+++ .+.++..+++.+.++. .+..+++|.++
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLW 255 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHH
Confidence 23334444445555677887655332211111110 0000011111122222 36677899999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhH--HHHH----HHHHHH-HHH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLL--NPFV----ALLASI-AYA 266 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~--~~~~----~~~~~~-~~~ 266 (390)
...+..++..........+.|.|+++.+|+++.+.+.+....++... +..+++.||+ +||. +..+.. ++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999889999988888766655444 4558899998 8777 222322 455
Q ss_pred HhHhccc--chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHH-HHhhhhhhhhhhhcccccCCC
Q 016418 267 LFYGLAW--ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSI-SSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 267 ~~~~~~~--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~g~~~~g~l~~~~~~~~~ 342 (390)
+.+...+ +.+... ..++.|++.+...+...++..|..|+++||+++|+.+...++ |..++|.+.|.+.+.. ++..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~ 414 (451)
T 1pw4_A 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDG 414 (451)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHH
Confidence 5555543 344443 556778888888888899999999999999999999999999 9999999999999976 5444
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhhc
Q 016418 343 PFNCKGFSIIVASICLMVSLSCACM 367 (390)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (390)
.+.+.+++.+++.+....
T Consensus 415 -------~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 415 -------GFMVMIGGSILAVILLIV 432 (451)
T ss_dssp -------HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 345555555555544443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-28 Score=222.73 Aligned_cols=308 Identities=13% Similarity=0.079 Sum_probs=230.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHH
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITV 89 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~ 89 (390)
.+..+....+...+..+...+.+|.+.++. |.++ .+.|++.+++.++..++++++|+++||+|||++++.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~-----~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~ 98 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAF---TLTN-----FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL 98 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CCCS-----HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHc---CCCH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH
Confidence 445566667777777788899999876554 6555 55699999999999999999999999999999999999
Q ss_pred HHHHHHHHHH---HhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------
Q 016418 90 STTIVPFTLL---AFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------- 134 (390)
Q Consensus 90 ~~~~i~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------- 134 (390)
++.+++.++. .++++ ++.+++.|++.|+ +.+...+...+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 99 FLYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccc---HHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 88899 9999999999999 6577777777777
Q ss_pred -HH-------------------------------H----HHHHHHHH--HHHHhcccCCCCCcccccccccccccccccc
Q 016418 135 -VS-------------------------------I----ALLIFVPV--YMQFFLVETVESAPRKDQESSGLKKAVNVLD 176 (390)
Q Consensus 135 -~~-------------------------------~----~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 176 (390)
+. - ....+..+ +..+..++++.++++++ .
T Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-------------~ 241 (438)
T 3o7q_A 175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS-------------D 241 (438)
T ss_dssp HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCC-------------C
T ss_pred HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc-------------c
Confidence 11 0 01111111 11112222111111000 0
Q ss_pred cccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHH-HhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhh
Q 016418 177 RRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFY-LKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPL 252 (390)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~ 252 (390)
++..+.++.++.++++|.++...+..++..........+.|.| +++.+|.++.+.+.......+... +..+++.||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r 321 (438)
T 3o7q_A 242 AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR 321 (438)
T ss_dssp SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112334556778889999999999898888888999999999 888889999988887766554443 466899999
Q ss_pred HHHHH----HHHHHHHHHHhHhcccchhHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhh
Q 016418 253 LNPFV----ALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPL 328 (390)
Q Consensus 253 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~ 328 (390)
++||+ +.+...++.+.....++.+..+..++.+++.+...|...++..|..|++ ++++.++.. ...++..++|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~ 399 (438)
T 3o7q_A 322 FAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTP 399 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHH
Confidence 99998 5555566666666666666555667888888989999999999999955 888888877 67799999999
Q ss_pred hhhhhhcccccCCCCC
Q 016418 329 AMSPLTSWFLSTDAPF 344 (390)
Q Consensus 329 ~~g~l~~~~~~~~~~~ 344 (390)
+.|.+.|..++++..+
T Consensus 400 ~~g~l~~~~g~~~~~~ 415 (438)
T 3o7q_A 400 VMGFVSDAAGNIPTAE 415 (438)
T ss_dssp HHHHHHHHHTSSGGGG
T ss_pred HHHHHHHHhcchHHHH
Confidence 9999999883266544
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=223.87 Aligned_cols=354 Identities=13% Similarity=0.075 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHH
Q 016418 16 LPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVP 95 (390)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~ 95 (390)
++.++.+.+.+++.+.+|.+..+...+...+.+.+..+.|++.+++.++.+++++++|+++||+|||++++++.++..++
T Consensus 19 lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~ 98 (491)
T 4gc0_A 19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS 98 (491)
T ss_dssp HHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34455666667777777766544321112233455677799999999999999999999999999999999999999999
Q ss_pred HHHHHh------------------ccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-----------------------
Q 016418 96 FTLLAF------------------NQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA----------------------- 134 (390)
Q Consensus 96 ~~~~~~------------------~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i----------------------- 134 (390)
.+++++ ++| +++++++|+++|+ +.|...+....++
T Consensus 99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~-g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g 174 (491)
T 4gc0_A 99 GVGSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGI-GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG 174 (491)
T ss_dssp HHHHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence 999884 677 9999999999999 6677778887777
Q ss_pred -----------------------------HHHHHHHHHHHHHHHhcccCCCCCccccccccccc--------c----ccc
Q 016418 135 -----------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLK--------K----AVN 173 (390)
Q Consensus 135 -----------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--------~----~~~ 173 (390)
....+..+..+...+.+||+|++...+.++++.++ + +..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~ 254 (491)
T 4gc0_A 175 QLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQ 254 (491)
T ss_dssp HHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHH
Confidence 11122223334455677888765222111110000 0 000
Q ss_pred ccccccccHHH--HHHhhhcCcchhHHHHHHHHHHHH-hhhHHHHHHHHHhhhcCCCchhHHHH---HHHHHHHHHHHHH
Q 016418 174 VLDRRYKSMRD--AALMVVSSPTLRGISFVSFFYKLG-MSGISAVLLFYLKAVFGFNKNQFSEI---LMMVGIGSIVSQI 247 (390)
Q Consensus 174 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~---~~~~~~~~~~~~~ 247 (390)
+..+.....++ ......+.++.........+.... ......+.+.+.+ ..+.+....... ..+..+.+.+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (491)
T 4gc0_A 255 EIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TLGASTDIALLQTIIVGVINLTFTVLAI 333 (491)
T ss_dssp HHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hcCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 00000000000 011122333333333333333333 3344444444444 446655544333 3344455556778
Q ss_pred HHHhhHHHHH----HHHHHHHHHHhHhc---c-cchhHHH-HHHHHHHHH-hhhHHHHHHHHhhccCCCchhhHHHHHHH
Q 016418 248 LVLPLLNPFV----ALLASIAYALFYGL---A-WASWVPY-LSASFGVIY-VLVKPSTYAIISKASGLNNQGKAQGFIAG 317 (390)
Q Consensus 248 ~~~~~~~~~~----~~~~~~~~~~~~~~---~-~~~~~~~-~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 317 (390)
++.||++||+ +.....++.+.+.. . .+.+... ...+...+. ....|..+.+.+|.+|++.|+++.|+.+.
T Consensus 334 ~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~ 413 (491)
T 4gc0_A 334 MTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA 413 (491)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHH
T ss_pred HHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence 9999999998 33333333332221 1 1222222 222222332 33457778899999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhh-hccccccCCCC
Q 016418 318 VQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCA-CMLDTEENSTN 376 (390)
Q Consensus 318 ~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 376 (390)
.+++++.+++.+.+.+.+.. .... ....+..+++.+++.+++.++. ++.+|.+.++-
T Consensus 414 ~~~~~~~i~~~~~p~l~~~~-~~~~-~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 414 AQWLANYFVSWTFPMMDKNS-WLVA-HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp HHHHHHHHHHTHHHHHCHHH-HHHH-HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHh-hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 99999999998887776532 1000 0111224555666666655544 44555555443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-27 Score=216.91 Aligned_cols=323 Identities=9% Similarity=-0.043 Sum_probs=210.9
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccc-cCCchHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADE-YGRKPLLL 86 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grk~~l~ 86 (390)
++.++.+....+...++.....+.++.|+.+.. ..++.+.+..+.|++.+.+.++..++++++|+++|| +|||+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~ 89 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLI--STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF 89 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 456677777888888888888888888886641 112334455777999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------
Q 016418 87 ITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------- 134 (390)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------- 134 (390)
.+.++..++.++++++++ ++.+++.|+++|+ +.+...+...+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFG---ASALFGSIILIII-GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHSCCS---TTHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999 6566777777766
Q ss_pred ---------------HHHHHHHHHHHHHHHhcccCCCCCccccccccccccccc--cc----------------------
Q 016418 135 ---------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVN--VL---------------------- 175 (390)
Q Consensus 135 ---------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~--~~---------------------- 175 (390)
+.++..++..+...+..|+..+++.+++.++.++++.++ +.
T Consensus 166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 245 (491)
T 4aps_A 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS 245 (491)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 222222222222222223322211111110000000000 00
Q ss_pred ccc--------------------cccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHH
Q 016418 176 DRR--------------------YKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEIL 235 (390)
Q Consensus 176 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 235 (390)
.++ .++.+...+...+....+...+..++....+......++.|.++..+.+..+.+...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (491)
T 4aps_A 246 LPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQ 325 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGT
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHh
Confidence 000 000000001111222344455556666667777788889999887777744444443
Q ss_pred H---HHHHHHHHHHHHHHhhHHHHH---------HHHHHHHHHHhHhccc---------chhHHH-HHHHHHHHHhhhHH
Q 016418 236 M---MVGIGSIVSQILVLPLLNPFV---------ALLASIAYALFYGLAW---------ASWVPY-LSASFGVIYVLVKP 293 (390)
Q Consensus 236 ~---~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~g~~~~~~~~ 293 (390)
. ...+......+++.||++||. +..+.++++..+.... +.+... ..++.+++.+...+
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 405 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISP 405 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTT
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH
Confidence 3 333334445578899998774 4444555555444421 333333 55778888888889
Q ss_pred HHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 294 STYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 294 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
..+++..|..|+++||++.|+.+...++|..++|.+.+.+.+.
T Consensus 406 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 406 VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988764
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=213.52 Aligned_cols=295 Identities=15% Similarity=0.102 Sum_probs=215.5
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHH
Q 016418 12 LHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVST 91 (390)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~ 91 (390)
..+....++..++.+...|.+|.+.++. |.++ .+.|++.+.+.++..+++++.|+++||+|||+++..+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~-----~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 74 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDL---NVRE-----GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI 74 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS---SSTT-----HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHc---CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 4566778888889999999999886443 4443 5669999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------------
Q 016418 92 TIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------------- 134 (390)
Q Consensus 92 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------------- 134 (390)
..++.++.+++++ ++.+++.|++.|+ +.+...+...+++
T Consensus 75 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 75 FMLATLVAVTTSS---LTVLIAASAMQGM-GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999999 9999999999999 5566667766666
Q ss_pred --------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHH
Q 016418 135 --------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYK 206 (390)
Q Consensus 135 --------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (390)
+.+++..+..+...+.+||+++++++++ +.+++ +++.+|+|+++...+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~----~~~~~~~~~~~~~~~~~~~~~ 212 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT--------------RLLTS----YKTLFGNSGFNCYLLMLIGGL 212 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC--------------CTTTC----STHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc--------------cHHHH----HHHHhcCcchHHHHHHHHHHH
Confidence 1222222222223344565543322110 00112 234556788888888888888
Q ss_pred HHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH--HHHH-HHHHHHh--Hhc--ccchh
Q 016418 207 LGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV--ALLA-SIAYALF--YGL--AWASW 276 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~-~~~~~~~--~~~--~~~~~ 276 (390)
........+.|.|+++.+|.++.+.+.+....++...+ ..+.+.||.+++. +... ...+... ... .++.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (375)
T 2gfp_A 213 AGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVW 292 (375)
T ss_dssp HHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHH
Confidence 88888999999999987899998888887766655543 3355566665533 2222 1112211 111 12344
Q ss_pred HHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 277 VPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 277 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
... ..++.+++.+...+...++..|..| ++||++.|+.+...++|..++|.+.|.+.+..
T Consensus 293 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 293 TLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp HHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 443 5567788888889999999999998 89999999999999999999999999998764
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=203.90 Aligned_cols=333 Identities=11% Similarity=0.091 Sum_probs=198.4
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLL 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~ 86 (390)
++|+++.+....++...+.+...|.+|.|+++.+ |.++. +.|++.+.+.++..++++++|+++||+|||++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~s~~-----~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~ 77 (417)
T 2cfq_A 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN--HISKS-----DTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTT--CCCTT-----TSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4566777777778888888899999999987654 55553 3499999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HHHhccCchhh-HHHHHHHHHHhhcccchHH----HHHHHHH------------------------
Q 016418 87 ITVSTTIVPFT---LLAFNQSQEFV-YAYYVLRTISYIISQGSIF----CIAVAYA------------------------ 134 (390)
Q Consensus 87 ~~~~~~~i~~~---~~~~~~~~~~~-~~l~~~r~l~G~~~~g~~~----~~~~~~i------------------------ 134 (390)
.+..+..+... ...+.+. . ..++..+.+.|+ ..+... +....+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 153 (417)
T 2cfq_A 78 WIITGMLVMFAPFFIFIFGPL---LQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153 (417)
T ss_dssp HHHHHTTSCHHHHHHHTHHHH---HHTTCCHHHHGGGS-STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 88776654321 1111111 0 011223333333 111111 1111111
Q ss_pred ---HHHHH--------------HHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhH
Q 016418 135 ---VSIAL--------------LIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRG 197 (390)
Q Consensus 135 ---~~~~~--------------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (390)
+.+.+ ..+......+..||+++++.+++ + .+++ + +++.+.+ .++.++++|+++.
T Consensus 154 ~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~----~~~~~~~-~~~~~~~~~~~~~ 224 (417)
T 2cfq_A 154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA-N-AVGA--N----HSAFSLK-LALELFRQPKLWF 224 (417)
T ss_dssp HHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSS-S-SSSS--C----CCCCCHH-HHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcccccccccc-c-cccc--c----cccccHH-HHHHHhcCCchhh
Confidence 00000 00111111122232221111000 0 0000 0 0011222 2345667888877
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhcCC---CchhHHHHHHHHH---HHHHHHHHHHHhhHHHHH----HHHHHHHHHH
Q 016418 198 ISFVSFFYKLGMSGISAVLLFYLKAVFGF---NKNQFSEILMMVG---IGSIVSQILVLPLLNPFV----ALLASIAYAL 267 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (390)
..+..+.....+.....++|.|+.+.++. +....+....... +.+.+..+++.||++||+ +....++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 225 LSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 77665655555566667788888766542 2334455554433 334456689999999998 4444555555
Q ss_pred hHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHH-HHHHHHHHhhhhhhhhhhhcccccCCCCCC
Q 016418 268 FYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFI-AGVQSISSLLSPLAMSPLTSWFLSTDAPFN 345 (390)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~ 345 (390)
.....++.+... ...+.+++.+...+....+..|..|++.||++++.. +...++|+.++|.+.|.+.+.. +++.
T Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~--- 380 (417)
T 2cfq_A 305 GSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQG--- 380 (417)
T ss_dssp HHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHH---
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHH---
Confidence 555555555444 334556666666677788999999999999999994 8888999999999999999865 4433
Q ss_pred CCchHHHHHHHHHHHHHHhhhc
Q 016418 346 CKGFSIIVASICLMVSLSCACM 367 (390)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~ 367 (390)
.|.+.+++.+++.+..+.
T Consensus 381 ----~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 381 ----AYLVLGLVALGFTLISVF 398 (417)
T ss_dssp ----HHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHHHHh
Confidence 345556665655554443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-22 Score=185.93 Aligned_cols=123 Identities=15% Similarity=0.038 Sum_probs=98.7
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCC-CCcchhHHHHHHHHHHHHHHHHhHhhhhccccccc-CCch
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQ-PTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEY-GRKP 83 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grk~ 83 (390)
+.++.++.+....++..++.....+.++.|+.+.+ |. .+.+.+..+.|++.+++.++..+++++.|+++||+ |||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~ 86 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTAL--LLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN 86 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSC--SSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 34567788888899999998888899998887654 40 00113335569999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHhcc-CchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 84 LLLITVSTTIVPFTLLAFNQ-SQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 84 ~l~~~~~~~~i~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
++..+.++..++.++.++++ + ++.+++.|++.|+ +.+...+...+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~ 134 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFEHS---VQGFYTGLFLIAL-GSGGIKPLVSSFM 134 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHH-HHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHH-hccccchhHHHHH
Confidence 99999999999999999998 8 9999999999999 5455566666665
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.4e-13 Score=122.29 Aligned_cols=150 Identities=9% Similarity=0.115 Sum_probs=125.3
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhh-----cCCCchhHHHHHHHHHHHHH---HHHHHHHhh-HHHHH----H
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAV-----FGFNKNQFSEILMMVGIGSI---VSQILVLPL-LNPFV----A 258 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~-~~~~~----~ 258 (390)
.+.++......++..+.+.....+++.|+++. +|.++.+.+++.+...+... +..|.++|| ++||+ +
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~ 91 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWG 91 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 34566777778888888888889999999887 89999999988776665544 456899999 89998 6
Q ss_pred HHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCc--hhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 259 LLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNN--QGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
.++..++.+....+++.+.++ ..++.|++.+...+...+++.|.+|+++ |+++.+..+...++|..++|.+++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 92 GVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp HHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777777888888877766 6688899999999999999999999988 7778888999999999999999999998
Q ss_pred ccccCCC
Q 016418 336 WFLSTDA 342 (390)
Q Consensus 336 ~~~~~~~ 342 (390)
.. +++.
T Consensus 172 ~~-g~~~ 177 (491)
T 4aps_A 172 AA-GYHV 177 (491)
T ss_dssp HS-CHHH
T ss_pred hh-hHHH
Confidence 65 5554
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=120.38 Aligned_cols=150 Identities=18% Similarity=0.159 Sum_probs=120.6
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~ 264 (390)
.+.+....+..+............+|.+.++. .++.+.|++.+...+... +..+.+.||++||+ +.++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 34455566666666777777777788777654 888888988776665544 45589999999999 6666777
Q ss_pred HHHhHhc----ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 016418 265 YALFYGL----AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLS 339 (390)
Q Consensus 265 ~~~~~~~----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~ 339 (390)
+.++..+ .++.+.++ ..++.|++.+...+...+++.|.+|+++|+++.|+.+....+|..++|.+++.+.+.. +
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g 183 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-N 183 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-C
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 7777777 77777666 6688899999999999999999999999999999999999999999999999988876 5
Q ss_pred -CCCCC
Q 016418 340 -TDAPF 344 (390)
Q Consensus 340 -~~~~~ 344 (390)
++.++
T Consensus 184 ~w~~~f 189 (451)
T 1pw4_A 184 DWHAAL 189 (451)
T ss_dssp CSTTCT
T ss_pred cHHHHH
Confidence 66655
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-12 Score=117.84 Aligned_cols=139 Identities=9% Similarity=-0.000 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFY 269 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~ 269 (390)
.+.+..+...+.........|.+ ++.+|.+..+.|++.+...+... +..+.+.||++||+ +.+..+++.++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666664 45569999999998877766554 46689999999999 666666666666
Q ss_pred ---hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh-cc
Q 016418 270 ---GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLT-SW 336 (390)
Q Consensus 270 ---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~-~~ 336 (390)
...++.+.++ ..++.|++.+...+...+++.|..|+++|+++.|+.+....+|..++|.+++.+. +.
T Consensus 109 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6677777776 6688999999999999999999999999999999999999999999999999998 44
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-12 Score=119.46 Aligned_cols=166 Identities=12% Similarity=0.059 Sum_probs=129.6
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcC------CCchhHHHHHHHHHHHHH---HHHHHHHhhH-HHHH----
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFG------FNKNQFSEILMMVGIGSI---VSQILVLPLL-NPFV---- 257 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~g~~~~~~~~~~~---~~~~~~~~~~-~~~~---- 257 (390)
+|.++.+.+..++..+.++....+++.|+++.+| +++.+.+++.+...+... +..|.+.||+ +||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4667778888888888888899999999988889 999999988776665544 4668999999 9988
Q ss_pred HHHHHHHHHHhHhccc-chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHH---HHHHHHHHHhhhhhhhhh
Q 016418 258 ALLASIAYALFYGLAW-ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGF---IAGVQSISSLLSPLAMSP 332 (390)
Q Consensus 258 ~~~~~~~~~~~~~~~~-~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~~~~~g~~~~g~ 332 (390)
+.++..++.++....+ +.+.++ ..++.|++.+...+...+++.|.+|+++|++..+. .+...++|..++|.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 91 LSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777 766665 56788999999999999999999999999876666 888999999999999999
Q ss_pred hhcccccCCCCCCCCchHHHHHHHHHHHHHHhh
Q 016418 333 LTSWFLSTDAPFNCKGFSIIVASICLMVSLSCA 365 (390)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (390)
+.+.. +++. .+.+.+++.+++.+..
T Consensus 171 l~~~~-g~~~-------~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 171 LLKNF-GAAV-------AFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHTS-CHHH-------HHHHHHHHHHHHHHHH
T ss_pred Hhccc-cHHH-------HHHHHHHHHHHHHHHH
Confidence 98765 4443 3444555544444443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-12 Score=116.02 Aligned_cols=158 Identities=9% Similarity=-0.077 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFY 269 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~ 269 (390)
.+....++...........+|.+.++ +|.++.+.+++.+...+...+ ..+.+.||++||+ +.....++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34556666667777777777776554 699999999888777666554 4489999999998 666677777777
Q ss_pred hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCc
Q 016418 270 GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKG 348 (390)
Q Consensus 270 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~ 348 (390)
...++.+.++ ..++.|++.+...+...+++.|..|+++|+++.+..+....+|..++|.+++.+.+.. +++.
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~------ 155 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA------ 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH------
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH------
Confidence 7777777665 5678899999999999999999999999999999999999999999999999998865 5443
Q ss_pred hHHHHHHHHHHHHHH
Q 016418 349 FSIIVASICLMVSLS 363 (390)
Q Consensus 349 ~~~~~~~~~~~~~~~ 363 (390)
.+.+.++..++..+
T Consensus 156 -~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 156 -CYLFLLVLCAGVTF 169 (375)
T ss_dssp -HHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHH
Confidence 33445555554444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-10 Score=103.97 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=95.4
Q ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHH
Q 016418 189 VVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLA 261 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~ 261 (390)
.+|+|+++......++....+.....++|.|+++.+|.++.+.|.+.+...+... +..|.++||++||+ +...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~ 82 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG 82 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4568888888888888888888888999999998889999999988876665544 45589999999998 1211
Q ss_pred HHH---HHHhHhcccch--hHHHHHHHHHH----HHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhh
Q 016418 262 SIA---YALFYGLAWAS--WVPYLSASFGV----IYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSP 332 (390)
Q Consensus 262 ~~~---~~~~~~~~~~~--~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~ 332 (390)
..+ ........+.. .......+.+. +.+...+....+..+. + ++++...|..+....+|..++|.+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~-~~~~~~~g~~~~~~~~g~~~~~~l~~~ 160 (417)
T 2cfq_A 83 MLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV-S-RRSNFEFGRARMFGCVGWALGASIVGI 160 (417)
T ss_dssp TTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH-H-HHHTCCHHHHSSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-h-hhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111111110 01111112222 2222333333444332 1 456777888888888999999999999
Q ss_pred hhcccccCCCCC
Q 016418 333 LTSWFLSTDAPF 344 (390)
Q Consensus 333 l~~~~~~~~~~~ 344 (390)
+.+. +++.++
T Consensus 161 l~~~--~~~~~f 170 (417)
T 2cfq_A 161 MFTI--NNQFVF 170 (417)
T ss_dssp HHHH--CSHHHH
T ss_pred HHHh--chhHHH
Confidence 9874 444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.1e-08 Score=90.93 Aligned_cols=108 Identities=11% Similarity=-0.185 Sum_probs=82.1
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHh------------------cccchhHHH-HHHH
Q 016418 230 QFSEILM---MVGIGSIVSQILVLPLLNPFV----ALLASIAYALFYG------------------LAWASWVPY-LSAS 283 (390)
Q Consensus 230 ~~g~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------------------~~~~~~~~~-~~~~ 283 (390)
..|++.+ +....+.+..|+++||+|||+ +.++..++.+..+ .+++.+.++ .-++
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 3445443 333445566799999999999 4444555555444 345666665 6689
Q ss_pred HHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 284 FGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
.|++.+...+....++.|..|+++|++..+..+.....|..+++.+........
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 189 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSG 189 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccc
Confidence 999999999999999999999999999999999999999998888877766543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.44 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.09 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.2e-29 Score=231.26 Aligned_cols=286 Identities=14% Similarity=0.044 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHHHHHHHhcc----CchhhHHHHHHHHHHhhcccchHH
Q 016418 52 YISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQ----SQEFVYAYYVLRTISYIISQGSIF 127 (390)
Q Consensus 52 ~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~----~~~~~~~l~~~r~l~G~~~~g~~~ 127 (390)
.+.|++.+++.++..++++++|+++||+|||+++..+.++.+++.+++++++ + ++.+++.|++.|+ +.+...
T Consensus 59 ~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~ 134 (447)
T d1pw4a_ 59 GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGW-FQGMGW 134 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHH-HHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhh---HHHHHHHHHHHHH-hhhhhh
Confidence 4459999999999999999999999999999999999999999998888764 5 7889999999999 546666
Q ss_pred HHHHHHH----------------------------------------------HHHHHHHHHHHHHHHhcccCCCCCccc
Q 016418 128 CIAVAYA----------------------------------------------VSIALLIFVPVYMQFFLVETVESAPRK 161 (390)
Q Consensus 128 ~~~~~~i----------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~ 161 (390)
+...+++ +.+.+..+..++.+...+|++++....
T Consensus 135 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (447)
T d1pw4a_ 135 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP 214 (447)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC
T ss_pred hHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccc
Confidence 6666666 444555555566666677765544332
Q ss_pred cccccccc---ccccccccccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHH
Q 016418 162 DQESSGLK---KAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMV 238 (390)
Q Consensus 162 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 238 (390)
+.++.+++ +..++..++....+...+..+++|.++......++..........+.+.|+++.++.+..+.+......
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 215 PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 294 (447)
T ss_dssp SCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred hhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcc
Confidence 22111111 111111112223333456778899999999888998888899999999999999899998888776555
Q ss_pred HHH---HHHHHHHHHhhHHHHH----H---HHHHHHHHHhHhc--ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCC
Q 016418 239 GIG---SIVSQILVLPLLNPFV----A---LLASIAYALFYGL--AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGL 305 (390)
Q Consensus 239 ~~~---~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~--~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 305 (390)
.+. +.+..+++.||.+|+. . ............. ..+.+... ..++.|++.+...+....+..|..|+
T Consensus 295 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 374 (447)
T d1pw4a_ 295 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK 374 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT
T ss_pred hhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 443 4456688899887654 1 1111222222222 22344443 45667777778888888999999999
Q ss_pred CchhhHHHHHHHHHHH-HHhhhhhhhhhhhcccccCCC
Q 016418 306 NNQGKAQGFIAGVQSI-SSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 306 ~~~g~~~g~~~~~~~~-~~~~g~~~~g~l~~~~~~~~~ 342 (390)
+.||++.|+.+...++ |..++|.+.|.+.|.. ++..
T Consensus 375 ~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~-g~~~ 411 (447)
T d1pw4a_ 375 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDG 411 (447)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHH
Confidence 9999999999998887 5667899999999976 5443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=4.5e-28 Score=217.74 Aligned_cols=336 Identities=10% Similarity=0.047 Sum_probs=212.2
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHH
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLL 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l 85 (390)
.|+|+++.+....++..++.+...|.+|.|++|.+ |.++ .+.|++.+++.++..++++++|+++||+|||+++
T Consensus 4 lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~--g~s~-----~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l 76 (417)
T d1pv7a_ 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN--HISK-----SDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL 76 (417)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCH-----HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 46788899999999999999999999999887754 4443 6679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCchh-hHHHHHHHHHHhhcccchHHH---HHHHHH---------------------------
Q 016418 86 LITVSTTIVPFTLLAFNQSQEF-VYAYYVLRTISYIISQGSIFC---IAVAYA--------------------------- 134 (390)
Q Consensus 86 ~~~~~~~~i~~~~~~~~~~~~~-~~~l~~~r~l~G~~~~g~~~~---~~~~~i--------------------------- 134 (390)
+.+.....++..+..+..+... ....+..+.+.+...+....+ ......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (417)
T d1pv7a_ 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS 156 (417)
T ss_dssp HHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccc
Confidence 9999998888888777665110 111233333333311111111 111100
Q ss_pred ---------------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHH
Q 016418 135 ---------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGIS 199 (390)
Q Consensus 135 ---------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (390)
.......+......+..+|++++++++++++.++++ ..++..+...+++..+...
T Consensus 157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 226 (417)
T d1pv7a_ 157 IVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSA----------FSLKLALELFRQPKLWFLS 226 (417)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCC----------CCHHHHHHHTTSSHHHHHH
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccc----------ccccccccccccccccchh
Confidence 222333333444445556555443332211111110 1111112233445445454
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhc---CCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhH
Q 016418 200 FVSFFYKLGMSGISAVLLFYLKAVF---GFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFY 269 (390)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~ 269 (390)
.................+.+..... +.+....+.......+... ...+.+.||.++++ +....+++.+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~ 306 (417)
T d1pv7a_ 227 LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcc
Confidence 4444444444444444444443322 2233334444444333333 34467788888877 566666777777
Q ss_pred hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHH-HHHHHHHhhhhhhhhhhhcccccCCCCCCCC
Q 016418 270 GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIA-GVQSISSLLSPLAMSPLTSWFLSTDAPFNCK 347 (390)
Q Consensus 270 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~ 347 (390)
...++.+..+ ..++.+++.+...+...++++|.+|+++||++.|+.. ....+|..++|.+.|.+.|.. +++.
T Consensus 307 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~----- 380 (417)
T d1pv7a_ 307 SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQG----- 380 (417)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHH-----
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHH-----
Confidence 7777777766 6678899999999999999999999999999999864 566799999999999999987 6554
Q ss_pred chHHHHHHHHHHHHHHhhh
Q 016418 348 GFSIIVASICLMVSLSCAC 366 (390)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~ 366 (390)
.+.+.+++.++..++..
T Consensus 381 --~~~~~~~~~~~~~~~~~ 397 (417)
T d1pv7a_ 381 --AYLVLGLVALGFTLISV 397 (417)
T ss_dssp --HHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHH
Confidence 33455555554444433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=6.2e-12 Score=112.82 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhHhccc----chhHHH
Q 016418 211 GISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFYGLAW----ASWVPY 279 (390)
Q Consensus 211 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~ 279 (390)
.+....| +++| +|+|..+.|++.+...+... +..|.++||++||+ +.++.+++.++.+... +.+..+
T Consensus 43 ~~~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (447)
T d1pw4a_ 43 NFALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120 (447)
T ss_dssp SHHHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHH
T ss_pred HHHHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHH
Confidence 3343334 5565 59999999998877665544 45589999999999 5555555655555443 444444
Q ss_pred -HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCC
Q 016418 280 -LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPF 344 (390)
Q Consensus 280 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~ 344 (390)
..++.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+...+++..+
T Consensus 121 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~ 186 (447)
T d1pw4a_ 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 186 (447)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCT
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccc
Confidence 66888999999999999999999999999999999999999999999999998887654555544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1.9e-10 Score=101.27 Aligned_cols=148 Identities=9% Similarity=-0.020 Sum_probs=99.0
Q ss_pred hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHH
Q 016418 190 VSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLAS 262 (390)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~ 262 (390)
+|||++|.+.+..++..+.......++|.|+++.+|.|+.+.|++.++..+... +..|.++||++||+ +....
T Consensus 4 lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~ 83 (417)
T d1pv7a_ 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 469999999999999999999999999999999889999999999887766655 45589999999998 33334
Q ss_pred HHHHHhHhcccchhHH-----HHHHHHHHHHhhhHHHHHHHHhhccC--CCchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 263 IAYALFYGLAWASWVP-----YLSASFGVIYVLVKPSTYAIISKASG--LNNQGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 263 ~~~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
.++........+.... ......+.+.+...........+..+ .+++....+........+..++|.+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (417)
T d1pv7a_ 84 LVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc
Confidence 4444444433332211 12222233333333333332222222 1234556677777888888999999999887
Q ss_pred cc
Q 016418 336 WF 337 (390)
Q Consensus 336 ~~ 337 (390)
..
T Consensus 164 ~~ 165 (417)
T d1pv7a_ 164 IN 165 (417)
T ss_dssp HC
T ss_pred cc
Confidence 53
|