Citrus Sinensis ID: 016420

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

MEGSSGDGKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMYRGNVDIKDEEVMCIGPDWIAR

ccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccccccccccccccEEEcccccccHHHHHHHHccccccEEEccccccccccHHHHHHHccccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHcccccEEEcHHHHcccccccc

cccccccccccHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHcccEEEEccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHHcccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEcccccHccHHHHHHHHHcccccEEEEcccccccccHHHHHHHHHcccccEEEEcEEEEEccccccc

megssgdgktsimdlpddCLCFIFQwldcgtdcesfgltchRWLDIQNLCRrsvqfqcsftlitcsslsqpiidirSFHVGRLLTRfqhlnwlslsgctelpdsglnQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTavrtsscrtvtgigfngcsptlayidaescqlgpegiigivsggglefLNVSgmsstlnggglaaIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLslchevrfpgwasvglncnnleKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMYrgnvdikdeevmcigpdwiar

megssgdgktsiMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLItcsslsqpiIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYankknsrvsstAWELFKMyrgnvdikdeevmcigpdwiar

************MDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMYRGNVDIKDEEVMCIGPDWI**

*************DLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMYRGNVDIKDEEVMCIGPDWIA*

**********SIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMYRGNVDIKDEEVMCIGPDWIAR

*******GKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMYRGNVDIKDEEVMCIGPD****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		390	2.2.26 [Sep-21-2011]
Q9SRR1		395	F-box/LRR-repeat protein	yes	no	0.982	0.969	0.606	1e-129
Q9C5D2		610	F-box/LRR-repeat protein	no	no	0.858	0.549	0.259	7e-24
Q708Y0		623	EIN3-binding F-box protei	no	no	0.843	0.528	0.257	7e-19
Q9CZV8		436	F-box/LRR-repeat protein	yes	no	0.761	0.681	0.257	4e-17
Q96IG2		436	F-box/LRR-repeat protein	yes	no	0.761	0.681	0.257	4e-17
Q58DG6		436	F-box/LRR-repeat protein	yes	no	0.761	0.681	0.257	4e-17
Q5BJ29		491	F-box/LRR-repeat protein	no	no	0.610	0.484	0.249	7e-17
Q9UJT9		491	F-box/LRR-repeat protein	no	no	0.610	0.484	0.249	5e-16
Q8BH16		423	F-box/LRR-repeat protein	no	no	0.751	0.692	0.266	1e-15
Q9SKK0		628	EIN3-binding F-box protei	no	no	0.833	0.517	0.257	1e-15

>sp\|Q9SRR1\|FBL12_ARATH F-box/LRR-repeat protein 12 OS=Arabidopsis thaliana GN=FBL12 PE=2 SV=1	Back alignment and function desciption

 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/384 (60%), Positives = 302/384 (78%), Gaps = 1/384 (0%)

Query: 4   SSGDGKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLI 63
           S  + +TSI+ LPDDCL FIFQ LD   D +SFGLTCHRWL+IQN+ RRS+QFQCSF+++
Sbjct: 7   SDNNVETSIIHLPDDCLSFIFQRLDSVADHDSFGLTCHRWLNIQNISRRSLQFQCSFSVL 66

Query: 64  TCSSLSQPIIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDC 123
             SSLSQ   D+ S H+ RLLTRFQ L  LSLSGCT L DS L+ L+  G++L TLYLDC
Sbjct: 67  NPSSLSQTNPDVSSHHLHRLLTRFQWLEHLSLSGCTVLNDSSLDSLRYPGARLHTLYLDC 126

Query: 124 CFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGL 183
           CF I+D+G+S IA+ C +L+ +SLYRCN++D+GLE LA    +L  VNL+YC  +SD G+
Sbjct: 127 CFGISDDGISTIASFCPNLSVVSLYRCNISDIGLETLARASLSLKCVNLSYCPLVSDFGI 186

Query: 184 RALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFL 243
           +ALSQ C QL +V+ S+C+++TG+GF+GCSPTL Y+DA+SCQL P+GI GI+SGGG+EFL
Sbjct: 187 KALSQACLQLESVKISNCKSITGVGFSGCSPTLGYVDADSCQLEPKGITGIISGGGIEFL 246

Query: 244 NVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCH 303
           N+SG+S  +   GL  IG+G A++L+ LNLRMCR VGDESI AIAKGCPLL+EWNL+LCH
Sbjct: 247 NISGVSCYIRKDGLVPIGSGIASKLRILNLRMCRTVGDESIEAIAKGCPLLQEWNLALCH 306

Query: 304 EVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAW 363
           EV+  GW +VG  C NL+KLHVNRCRNLCD+GL ALR GC  L ILY N  N+R++ TA 
Sbjct: 307 EVKISGWEAVGKWCRNLKKLHVNRCRNLCDQGLLALRCGCMNLQILYMN-GNARLTPTAI 365

Query: 364 ELFKMYRGNVDIKDEEVMCIGPDW 387
           E+F+++R ++ ++ EE+M IGPDW
Sbjct: 366 EMFRLHRADITLRTEEMMVIGPDW 389

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9C5D2\|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1	Back alignment and function description

>sp\|Q708Y0\|EBF2_ARATH EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1	Back alignment and function description

>sp\|Q9CZV8\|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3	Back alignment and function description

>sp\|Q96IG2\|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2	Back alignment and function description

>sp\|Q58DG6\|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2	Back alignment and function description

>sp\|Q5BJ29\|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1	Back alignment and function description

>sp\|Q9UJT9\|FBXL7_HUMAN F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1	Back alignment and function description

>sp\|Q8BH16\|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1	Back alignment and function description

>sp\|Q9SKK0\|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		390
255567196		389	ubiquitin-protein ligase, putative [Rici	0.997	1.0	0.687	1e-153
224140835		374	predicted protein [Populus trichocarpa]	0.902	0.941	0.660	1e-128
18397984		395	F-box/LRR-repeat protein 12 [Arabidopsis	0.982	0.969	0.606	1e-127
297829306		394	F-box family protein [Arabidopsis lyrata	0.979	0.969	0.608	1e-127
356520324		388	PREDICTED: F-box/LRR-repeat protein 12-l	0.969	0.974	0.604	1e-122
125533996		381	hypothetical protein OsI_35725 [Oryza sa	0.923	0.944	0.462	6e-90
115485015		381	Os11g0264200 [Oryza sativa Japonica Grou	0.923	0.944	0.462	6e-90
357156953		381	PREDICTED: F-box/LRR-repeat protein 12-l	0.920	0.942	0.455	5e-89
242070489		386	hypothetical protein SORBIDRAFT_05g00653	0.935	0.945	0.437	7e-82
40850582		313	F-box-like protein [Musa acuminata]	0.723	0.900	0.531	8e-81

>gi\|255567196\|ref\|XP_002524579.1\| ubiquitin-protein ligase, putative [Ricinus communis] gi\|223536132\|gb\|EEF37787.1\| ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 268/390 (68%), Positives = 316/390 (81%), Gaps = 1/390 (0%)

Query: 1   MEGSSGDGKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSF 60
           M   S DG TSIM L DDCL  IFQWLDC +D ESFGLTC R LDIQN+ RRS+QFQCSF
Sbjct: 1   MVDHSSDGPTSIMHLSDDCLSIIFQWLDCNSDRESFGLTCRRLLDIQNINRRSLQFQCSF 60

Query: 61  TLITCSSLSQPIIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLY 120
           T+   +SL Q  + I SFH+ RLLTRFQHL++LSLSGCT+LPDS L  LQ YGS+L +L+
Sbjct: 61  TIFNLTSLPQRSLFINSFHIHRLLTRFQHLHFLSLSGCTDLPDSALIPLQFYGSRLHSLH 120

Query: 121 LDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISD 180
           LDCCF +TDNGLS+I +GC  LT ISLYRCN+TD+GLE LA+ CS L ++NL+YC  +SD
Sbjct: 121 LDCCFGLTDNGLSLITSGCPYLTVISLYRCNITDIGLETLANGCSALKQINLSYCPLVSD 180

Query: 181 CGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGL 240
           CGLR++SQ C QL AV+ S CR ++G+GF GCSPTLAYIDAESC L P+G++GIVSGGGL
Sbjct: 181 CGLRSISQACCQLQAVKISCCREISGVGFTGCSPTLAYIDAESCNLDPKGVMGIVSGGGL 240

Query: 241 EFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLS 300
           E+LNVSG+S ++ G GLAAIG+GFA RLK LNLRMCR VGDES  AIAKGCPLL+EWNL+
Sbjct: 241 EYLNVSGISWSIKGDGLAAIGSGFAARLKILNLRMCRTVGDESATAIAKGCPLLQEWNLA 300

Query: 301 LCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS 360
           LCH V+  GW S+G  CN LEKLHVNRCRNLCDRGLQALR+GCK L +LY N K+ RVSS
Sbjct: 301 LCHGVQISGWESIGFGCNRLEKLHVNRCRNLCDRGLQALREGCKMLSVLYLN-KSCRVSS 359

Query: 361 TAWELFKMYRGNVDIKDEEVMCIGPDWIAR 390
            A ELFK+YRGNV+I++EEVMCIGP    R
Sbjct: 360 NAIELFKLYRGNVEIREEEVMCIGPARTFR 389

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224140835\|ref\|XP_002323784.1\| predicted protein [Populus trichocarpa] gi\|222866786\|gb\|EEF03917.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi|18397984|ref|NP_566312.1| F-box/LRR-repeat protein 12 [Arabidopsis thaliana] gi|30680350|ref|NP_850534.1| F-box/LRR-repeat protein 12 [Arabidopsis thaliana] gi|75207381|sp|Q9SRR1.1|FBL12_ARATH RecName: Full=F-box/LRR-repeat protein 12 gi|6041850|gb|AAF02159.1|AC009853_19 unknown protein [Arabidopsis thaliana] gi|26452863|dbj|BAC43510.1| unknown protein [Arabidopsis thaliana] gi|30793809|gb|AAP40357.1| putative F-box protein family, AtFBL12 [Arabidopsis thaliana] gi|332641038|gb|AEE74559.1| F-box/LRR-repeat protein 12 [Arabidopsis thaliana] gi|332641039|gb|AEE74560.1| F-box/LRR-repeat protein 12 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297829306\|ref\|XP_002882535.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi\|297328375\|gb\|EFH58794.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356520324\|ref\|XP_003528813.1\| PREDICTED: F-box/LRR-repeat protein 12-like [Glycine max]	Back alignment and taxonomy information

>gi\|125533996\|gb\|EAY80544.1\| hypothetical protein OsI_35725 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi|115485015|ref|NP_001067651.1| Os11g0264200 [Oryza sativa Japonica Group] gi|62733985|gb|AAX96094.1| F-box protein family, AtFBL12, putative [Oryza sativa Japonica Group] gi|77549686|gb|ABA92483.1| Leucine Rich Repeat family protein, expressed [Oryza sativa Japonica Group] gi|113644873|dbj|BAF28014.1| Os11g0264200 [Oryza sativa Japonica Group] gi|125576796|gb|EAZ18018.1| hypothetical protein OsJ_33566 [Oryza sativa Japonica Group] gi|215704798|dbj|BAG94826.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704804|dbj|BAG94832.1| unnamed protein product [Oryza sativa Japonica Group]

Back alignment and taxonomy information

>gi\|357156953\|ref\|XP_003577632.1\| PREDICTED: F-box/LRR-repeat protein 12-like [Brachypodium distachyon] gi\|357156956\|ref\|XP_003577633.1\| PREDICTED: F-box/LRR-repeat protein 12-like [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|242070489\|ref\|XP_002450521.1\| hypothetical protein SORBIDRAFT_05g006530 [Sorghum bicolor] gi\|241936364\|gb\|EES09509.1\| hypothetical protein SORBIDRAFT_05g006530 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|40850582\|gb\|AAR96013.1\| F-box-like protein [Musa acuminata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		390
TAIR\|locus:2079721		395	AT3G07550 "AT3G07550" [Arabido	0.982	0.969	0.606	1.7e-128
TAIR\|locus:2166978		405	AT5G23340 [Arabidopsis thalian	0.843	0.812	0.291	5.4e-31
TAIR\|locus:505006471		610	AT4G15475 "AT4G15475" [Arabido	0.689	0.440	0.284	3.3e-25
UNIPROTKB\|F1NHD2		423	FBXL2 "Uncharacterized protein	0.776	0.716	0.286	5.3e-24
UNIPROTKB\|Q58DG6		436	FBXL20 "F-box/LRR-repeat prote	0.761	0.681	0.257	8.2e-23
UNIPROTKB\|Q96IG2		436	FBXL20 "F-box/LRR-repeat prote	0.761	0.681	0.257	8.2e-23
MGI\|MGI:1919444		436	Fbxl20 "F-box and leucine-rich	0.761	0.681	0.257	8.2e-23
UNIPROTKB\|Q17R01		400	FBXL14 "F-box/LRR-repeat prote	0.641	0.625	0.294	3e-22
MGI\|MGI:2141676		400	Fbxl14 "F-box and leucine-rich	0.641	0.625	0.294	3e-22
RGD\|1305523		400	Fbxl14 "F-box and leucine-rich	0.641	0.625	0.294	3e-22

TAIR\|locus:2079721 AT3G07550 "AT3G07550" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 233/384 (60%), Positives = 302/384 (78%)

Query:     4 SSGDGKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLI 63
             S  + +TSI+ LPDDCL FIFQ LD   D +SFGLTCHRWL+IQN+ RRS+QFQCSF+++
Sbjct:     7 SDNNVETSIIHLPDDCLSFIFQRLDSVADHDSFGLTCHRWLNIQNISRRSLQFQCSFSVL 66

Query:    64 TCSSLSQPIIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDC 123
               SSLSQ   D+ S H+ RLLTRFQ L  LSLSGCT L DS L+ L+  G++L TLYLDC
Sbjct:    67 NPSSLSQTNPDVSSHHLHRLLTRFQWLEHLSLSGCTVLNDSSLDSLRYPGARLHTLYLDC 126

Query:   124 CFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGL 183
             CF I+D+G+S IA+ C +L+ +SLYRCN++D+GLE LA    +L  VNL+YC  +SD G+
Sbjct:   127 CFGISDDGISTIASFCPNLSVVSLYRCNISDIGLETLARASLSLKCVNLSYCPLVSDFGI 186

Query:   184 RALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFL 243
             +ALSQ C QL +V+ S+C+++TG+GF+GCSPTL Y+DA+SCQL P+GI GI+SGGG+EFL
Sbjct:   187 KALSQACLQLESVKISNCKSITGVGFSGCSPTLGYVDADSCQLEPKGITGIISGGGIEFL 246

Query:   244 NVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCH 303
             N+SG+S  +   GL  IG+G A++L+ LNLRMCR VGDESI AIAKGCPLL+EWNL+LCH
Sbjct:   247 NISGVSCYIRKDGLVPIGSGIASKLRILNLRMCRTVGDESIEAIAKGCPLLQEWNLALCH 306

Query:   304 EVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAW 363
             EV+  GW +VG  C NL+KLHVNRCRNLCD+GL ALR GC  L ILY N  N+R++ TA 
Sbjct:   307 EVKISGWEAVGKWCRNLKKLHVNRCRNLCDQGLLALRCGCMNLQILYMNG-NARLTPTAI 365

Query:   364 ELFKMYRGNVDIKDEEVMCIGPDW 387
             E+F+++R ++ ++ EE+M IGPDW
Sbjct:   366 EMFRLHRADITLRTEEMMVIGPDW 389

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR\|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q17R01 FBXL14 "F-box/LRR-repeat protein 14" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:2141676 Fbxl14 "F-box and leucine-rich repeat protein 14" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1305523 Fbxl14 "F-box and leucine-rich repeat protein 14" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SRR1	FBL12_ARATH	No assigned EC number	0.6067	0.9820	0.9696	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		390
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	5e-14
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-11

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 70.4 bits (173), Expect = 5e-14
 Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 6/129 (4%)

Query: 82  RLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSS 141
             L+    L  L L G   + D GL  L      LQ L L  C  ITD+G+  +AT C  
Sbjct: 46  DQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPK 105

Query: 142 LTSISLYRCN----VTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQ-LTAV 196
           L +I+L R      +TDV L  L   C+ L  V  A C  ++D G+  L+ GCS+ L  +
Sbjct: 106 LQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELASGCSKSLERL 164

Query: 197 RTSSCRTVT 205
             ++CR +T
Sbjct: 165 SLNNCRNLT 173

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		390
KOG4341		483	consensus F-box protein containing LRR [General fu	100.0
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.95
KOG4341		483	consensus F-box protein containing LRR [General fu	99.88
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.64
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.58
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.55
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.55
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.51
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.45
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.37
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.37
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.32
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.22
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.22
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.16
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.99
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	98.88
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	98.86
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.81
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.77
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.68
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.66
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.63
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.56
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	98.53
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.51
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.46
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.41
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.39
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.37
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.31
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.27
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.2
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.15
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	97.99
KOG3864		221	consensus Uncharacterized conserved protein [Funct	97.92
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	97.89
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	97.83
KOG4237		498	consensus Extracellular matrix protein slit, conta	97.66
KOG4237		498	consensus Extracellular matrix protein slit, conta	97.64
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.63
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.36
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.36
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.35
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.28
KOG4308		478	consensus LRR-containing protein [Function unknown	97.24
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.16
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.15
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.06
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.03
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	97.01
KOG4308		478	consensus LRR-containing protein [Function unknown	96.97
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.56
KOG0617		264	consensus Ras suppressor protein (contains leucine	96.54
PRK15386		426	type III secretion protein GogB; Provisional	96.33
KOG0472		565	consensus Leucine-rich repeat protein [Function un	96.32
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.31
PLN03150		623	hypothetical protein; Provisional	96.24
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.17
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.1
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.09
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.02
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	95.89
KOG2997		366	consensus F-box protein FBX9 [General function pre	95.83
PRK15386		426	type III secretion protein GogB; Provisional	95.58
PLN03150		623	hypothetical protein; Provisional	95.43
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.25
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	95.17
KOG0472		565	consensus Leucine-rich repeat protein [Function un	94.92
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	94.86
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.81
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	94.58
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.89
PF13013		109	F-box-like_2: F-box-like domain	93.11
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	91.97
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	91.19
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	90.45
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	89.44
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	89.33
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	89.26
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	87.68
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	86.4
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	85.14
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	83.1
PF09372		97	PRANC: PRANC domain; InterPro: IPR018272 This pres	80.43

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=2.6e-36  Score=253.45  Aligned_cols=371  Identities=23%  Similarity=0.374  Sum_probs=278.7

Q ss_pred             cCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhccc--ccccee---eecccc-----------cccccCCCCcchh
Q 016420           11 SIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNL--CRRSVQ---FQCSFT-----------LITCSSLSQPIID   74 (390)
Q Consensus        11 ~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~~--~~~~~~---~~~~~~-----------~~~~~~l~~~~~~   74 (390)
                      ....||+|++..||++|+. ..+.+++++|+.|+..+..  .|-.+.   +..+..           ...+..+..++..
T Consensus        71 ~~~~LPpEl~lkvFS~LDt-ksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r  149 (483)
T KOG4341|consen   71 ISRSLPPELLLKVFSMLDT-KSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCR  149 (483)
T ss_pred             ccccCCHHHHHHHHHHHhH-HHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccc
Confidence            3457999999999999997 7888889999999986421  111111   111100           1112233333322


Q ss_pred             -hhhhHHHHHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEeccc-cc
Q 016420           75 -IRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRC-NV  152 (390)
Q Consensus        75 -~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~  152 (390)
                       +....+..+...+|++++|.+.+|..+++..+..+++.|++|++|++..|..+++..+..+.+.|++|+.|+++.| .+
T Consensus       150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi  229 (483)
T KOG4341|consen  150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI  229 (483)
T ss_pred             cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence             2344555666777888888888888888877778888888888888888777788777777778888888888888 77


Q ss_pred             ChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCccccc---ccCCCCCeEEeeccC-CCh
Q 016420          153 TDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFN---GCSPTLAYIDAESCQ-LGP  228 (390)
Q Consensus       153 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~-~~~  228 (390)
                      +..+++.+.+++.+++.+...+|...+.+.+..+..+++.+..+++..|..+++..+.   ..+..|+.|..+++. +.+
T Consensus       230 ~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d  309 (483)
T KOG4341|consen  230 SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD  309 (483)
T ss_pred             hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence            7777777777777777777777777777777777777777777777777777765542   223467888887765 666


Q ss_pred             hhHHhhh-cCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCCh
Q 016420          229 EGIIGIV-SGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRF  307 (390)
Q Consensus       229 ~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  307 (390)
                      ..+..+. ..++|+.|.+.++.. .++.++..++. .++.|+.+++..|..+.+..+..+..+||.|+.|.+++|..++|
T Consensus       310 ~~l~aLg~~~~~L~~l~l~~c~~-fsd~~ft~l~r-n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  310 EVLWALGQHCHNLQVLELSGCQQ-FSDRGFTMLGR-NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD  387 (483)
T ss_pred             HHHHHHhcCCCceEEEeccccch-hhhhhhhhhhc-CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence            6666663 457888888888865 45566665554 47888889888888777777888888899999999998888888


Q ss_pred             hHHHHHhh---cCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCChHHHHHHHhhcCceeEeecceeeeC
Q 016420          308 PGWASVGL---NCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMYRGNVDIKDEEVMCIG  384 (390)
Q Consensus       308 ~~~~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~~~~~l~~~~~~l~~~~~~~~~~~  384 (390)
                      +++..+..   ....|+.+.+.+|+.+++..++.+. .|++|+.+++.+ |..++++++..++.++|++++..+......
T Consensus       388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~-~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~  465 (483)
T KOG4341|consen  388 EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELID-CQDVTKEAISRFATHLPNIKVHAYFAPVTP  465 (483)
T ss_pred             hhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeec-hhhhhhhhhHHHHhhCccceehhhccCCCC
Confidence            88777753   3468888889999888888777776 799999999999 999999999999999999999999988887


Q ss_pred             Cc
Q 016420          385 PD  386 (390)
Q Consensus       385 ~~  386 (390)
                      |.
T Consensus       466 p~  467 (483)
T KOG4341|consen  466 PG  467 (483)
T ss_pred             cc
Confidence            75

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		390
3ogk_B		592	Structure Of Coi1-Ask1 In Complex With Coronatine A		8e-07
2p1m_B		594	Tir1-ask1 Complex Structure Length = 594		6e-06

>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592

Back alignment and structure

Iteration: 1

Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 85/373 (22%), Positives = 145/373 (38%), Gaps = 53/373 (14%) Query: 17 DDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIR 76 DD + + ++ D +S L C RW I + R V +T T LS+ ++R Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYT-ATPDRLSRRFPNLR 76 Query: 77 SFHV-GRLLTRFQHL---NW--LSLSGCTELPDSGLNQLQNY------------------ 112 S + G+ +L NW TE+ ++ L QL++ Sbjct: 77 SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNN-LRQLKSVHFRRMIVSDLDLDRLAKA 135 Query: 113 -GSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVG---LEILASTCSTLM 168 L+TL LD C T +GL I T C + ++ + + ++ L LA ++L Sbjct: 136 RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195 Query: 169 RVN--LAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQL 226 +N + IS L +++ C L +V+ + +GF + L S Sbjct: 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE 255 Query: 227 G---PEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDES 283 PE + +V L L +S M G I FA +++ L+L + + E Sbjct: 256 DIGMPEKYMNLVFPRKLCRLGLSYM-----GPNEMPILFPFAAQIRKLDL-LYALLETED 309 Query: 284 IVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRN----------LCD 333 + + CP LE L + + G + C L++L + R + + Sbjct: 310 HCTLIQKCPNLE--VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 Query: 334 RGLQALRDGCKQL 346 RGL AL GC++L Sbjct: 368 RGLIALAQGCQEL 380

PyMOL of 3ogk

>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		390
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	7e-42
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	4e-30
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	5e-29
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-09
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	4e-39
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-31
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	4e-29
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	6e-13
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-36
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	5e-15
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-15
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-13
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-07
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-14
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-10
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-12
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-12
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-11
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-08
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-07
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	6e-11
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	1e-10
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	3e-08
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-07
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	6e-07
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	2e-04
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	5e-04
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

 Score =  153 bits (389), Expect = 7e-42
 Identities = 68/343 (19%), Positives = 123/343 (35%), Gaps = 53/343 (15%)

Query: 9   KTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLITCSSL 68
           K   +  P++ L  +F ++    D  S  L C  W +I+  CRR V              
Sbjct: 3   KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVF------------- 49

Query: 69  SQPIIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQIT 128
              I +  +     ++ RF  +  + L G     D  L               D      
Sbjct: 50  ---IGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLV-------------PDGWGGYV 93

Query: 129 DNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQ 188
              +  +++  + L  I L R  VTD  LE++A +      + L+ C   S  GL A++ 
Sbjct: 94  YPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA 153

Query: 189 GCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGM 248
            C  L  +       V  +  +     L++   ++                L  LN+S +
Sbjct: 154 TCRNLKELDLRESD-VDDVSGHW----LSHF-PDTY-------------TSLVSLNISCL 194

Query: 249 SSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLC-HEVRF 307
           +S ++   L  + T     LK+L L     V  E +  + +  P LEE        EVR 
Sbjct: 195 ASEVSFSALERLVTRC-PNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRP 251

Query: 308 PGWASVGLNCNNLEKL-HVNRCRNLCDRGLQALRDGCKQLLIL 349
             ++ + +  +  ++L  ++   +     L A+   C +L  L
Sbjct: 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294

PyMOL of 2p1m

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		390
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.97
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.92
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.87
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.79
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.79
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.76
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.71
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.71
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.69
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.62
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.62
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.6
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.6
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.58
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.57
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.57
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.56
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.54
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.53
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.53
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.52
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.52
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.51
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.51
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.5
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.5
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.5
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.5
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.49
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.49
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.49
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.49
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.48
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.47
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.46
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.46
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.46
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.44
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.44
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.44
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.43
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.43
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.41
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.41
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.41
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.41
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.41
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.41
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.4
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.4
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.4
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.39
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.39
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.39
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.38
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.37
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.37
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.37
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.37
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.36
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.35
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.34
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.34
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.34
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.33
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.33
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.32
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.32
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.31
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.31
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.3
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.3
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.26
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.25
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.24
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.23
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.22
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.21
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.18
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.15
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.15
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.14
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.12
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.08
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.08
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.08
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.07
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.04
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.04
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.03
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.02
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.02
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.0
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.0
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.0
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	98.97
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	98.97
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.95
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.9
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.87
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.87
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.87
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.85
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.81
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.8
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.78
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.75
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.75
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.68
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.59
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.59
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.58
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.58
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.57
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.57
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.57
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.55
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.5
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.5
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.48
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.47
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.46
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.45
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.44
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.44
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.41
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.34
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.26
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.25
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.24
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.23
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.09
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.01
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.01
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.95
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	97.91
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.89
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.88
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.86
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.82
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.81
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.79
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	97.58
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.43
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.42
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.41
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.34
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.25
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.2
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.2
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.19
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.14
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.89
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.2
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.16
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	94.89
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	93.24
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	89.56
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	87.24
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	84.26
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	81.62

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=100.00  E-value=5.7e-33  Score=265.27  Aligned_cols=362  Identities=18%  Similarity=0.287  Sum_probs=214.0

Q ss_pred             CCCcCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhccccccceeeeccccc---------ccccCCCCcc------
Q 016420            8 GKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTL---------ITCSSLSQPI------   72 (390)
Q Consensus         8 ~~~~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~------   72 (390)
                      +.+.|+.||+|||.+||+||+..+|+.++++|||+|+++....+..+.+......         .++..+....      
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~   81 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD   81 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence            4688999999999999999994489999999999999986555555544321100         0111111000      


Q ss_pred             --------hhhhhhHHHHHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCe
Q 016420           73 --------IDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTS  144 (390)
Q Consensus        73 --------~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  144 (390)
                              .......+..+...+++|++|+++++. +++..+..+...+++|++|++++|..+++.++..+...|++|++
T Consensus        82 ~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~  160 (594)
T 2p1m_B           82 FNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE  160 (594)
T ss_dssp             GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCE
T ss_pred             cccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCE
Confidence                    011122345566777888888888753 66666777766678888888888766777777777777888888


Q ss_pred             EEecccccChHH---HHHHHhcCcccceeeccCCC-CCCHHHHHHHHHcCCCCCEEeccccCccCc-ccccccCCCCCeE
Q 016420          145 ISLYRCNVTDVG---LEILASTCSTLMRVNLAYCL-HISDCGLRALSQGCSQLTAVRTSSCRTVTG-IGFNGCSPTLAYI  219 (390)
Q Consensus       145 L~l~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L  219 (390)
                      |++++|.+++.+   +..+...+++|++|+++++. .++...+..+...+|+|++|++.+|..... ..+....++|++|
T Consensus       161 L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  240 (594)
T 2p1m_B          161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL  240 (594)
T ss_dssp             EECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred             EeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence            888877554433   33344456788888887764 466677777777788888888887743332 1222345677777


Q ss_pred             EeeccC--CCh---------------------------hhHHhh-hcCCCccEEEecCCccccccchhHhhhhccCCCcc
Q 016420          220 DAESCQ--LGP---------------------------EGIIGI-VSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLK  269 (390)
Q Consensus       220 ~l~~~~--~~~---------------------------~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  269 (390)
                      ++..+.  +..                           ..+..+ ..+++|++|+++++.  ..+.++..+ ...+++|+
T Consensus       241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--l~~~~l~~~-~~~~~~L~  317 (594)
T 2p1m_B          241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT--VQSYDLVKL-LCQCPKLQ  317 (594)
T ss_dssp             ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC--CCHHHHHHH-HTTCTTCC
T ss_pred             ccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC--CCHHHHHHH-HhcCCCcC
Confidence            765442  111                           111111 134556666665554  222222222 12356666


Q ss_pred             EEecCCCCCCChHHHHHHHhcCCCCceeec--------ccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHH
Q 016420          270 TLNLRMCRNVGDESIVAIAKGCPLLEEWNL--------SLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRD  341 (390)
Q Consensus       270 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l--------~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~  341 (390)
                      +|++.+|  +++.++..+...+++|+.|++        ..+..+++.++..+...|++|+.|.++. ..+++.++..+..
T Consensus       318 ~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~  394 (594)
T 2p1m_B          318 RLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIAR  394 (594)
T ss_dssp             EEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHH
T ss_pred             EEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHh
Confidence            6666655  445555555555666666666        2334556666666665566666664443 3566666666665


Q ss_pred             cCCCCceeecc-----ccCCcCC----hHHHHHHHhhcCceeEee
Q 016420          342 GCKQLLILYAN-----KKNSRVS----STAWELFKMYRGNVDIKD  377 (390)
Q Consensus       342 ~~~~L~~L~l~-----~~c~~l~----~~~~~~l~~~~~~l~~~~  377 (390)
                      .|++|+.|+++     + |+.++    +.++..+...+++++.-.
T Consensus       395 ~~~~L~~L~L~~~~~~~-~~~l~~~~~~~~~~~l~~~~~~L~~L~  438 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKA-PDYLTLEPLDIGFGAIVEHCKDLRRLS  438 (594)
T ss_dssp             HCTTCCEEEEEESSTTC-CCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred             hCCCcceeEeecccCCC-cccccCCchhhHHHHHHhhCCCccEEe
Confidence            66667777666     5 66666    566666655666554433

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		390
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-07
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1nexb1		100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.003

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 9e-07
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 32/269 (11%)

Query: 80  VGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGC 139
            GRLL++         S   +      +       ++Q + L     I  + L  I + C
Sbjct: 17  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPF-----RVQHMDLSNS-VIEVSTLHGILSQC 70

Query: 140 SSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTS 199
           S L ++SL    ++D  +  LA   S L+R+NL+ C   S+  L+ L   CS+L  +  S
Sbjct: 71  SKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 129

Query: 200 SCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAA 259
            C   T          ++    +    G                               +
Sbjct: 130 WCFDFTEKHVQVAVAHVSETITQLNLSG---------------------YRKNLQKSDLS 168

Query: 260 IGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNN 319
                   L  L+L     + ++      +    L+  +LS C+++       +G     
Sbjct: 169 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELG-EIPT 226

Query: 320 LEKLHVNRCRNLCDRGLQALRDGCKQLLI 348
           L+ L V     + D  LQ L++    L I
Sbjct: 227 LKTLQVFGI--VPDGTLQLLKEALPHLQI 253

PyMOL of d2astb2

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		390
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.93
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.88
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.65
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.63
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.6
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.2
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.15
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.14
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.13
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.07
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.06
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.99
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.97
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.97
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.95
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.9
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.89
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.78
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.76
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.75
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.75
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.73
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.72
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.71
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.69
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.64
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.63
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.62
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.56
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.47
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.36
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.28
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.23
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.2
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.14
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.07
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.94
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	97.9
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	97.88
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.86
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.19
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.09
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.06
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.88

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-24  Score=184.89  Aligned_cols=216  Identities=24%  Similarity=0.307  Sum_probs=165.2

Q ss_pred             CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCC
Q 016420          114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQL  193 (390)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L  193 (390)
                      .+|++|++++|. +++..+..+...|++|++|++.+|.+++..+..+.+ +++|++|++++|..+++.++..+.+.||+|
T Consensus        46 ~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhc
Confidence            578888888764 777777777778888888888888777777777654 788888888887778888888877778888


Q ss_pred             CEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEec
Q 016420          194 TAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNL  273 (390)
Q Consensus       194 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  273 (390)
                      ++|++++|..+.+.+                                                +.......+++|++|++
T Consensus       124 ~~L~ls~c~~~~~~~------------------------------------------------~~~~~~~~~~~L~~L~l  155 (284)
T d2astb2         124 DELNLSWCFDFTEKH------------------------------------------------VQVAVAHVSETITQLNL  155 (284)
T ss_dssp             CEEECCCCTTCCHHH------------------------------------------------HHHHHHHSCTTCCEEEC
T ss_pred             ccccccccccccccc------------------------------------------------chhhhcccccccchhhh
Confidence            888877765433221                                                11112223677888888


Q ss_pred             CCCC-CCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeecc
Q 016420          274 RMCR-NVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYAN  352 (390)
Q Consensus       274 ~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~  352 (390)
                      +++. .+++.++..+...||+|+.|++++|..+++.++..+. .+++|++|++++|..+++.++..+. .+|+|+.|+++
T Consensus       156 ~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~  233 (284)
T d2astb2         156 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVF  233 (284)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECT
T ss_pred             cccccccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHHh-cCCCCCEEeee
Confidence            8763 4778888888888999999999988888888877776 4789999999998888888887765 68999999998


Q ss_pred             ccCCcCChHHHHHHHhhcCceeEeecceeeeC
Q 016420          353 KKNSRVSSTAWELFKMYRGNVDIKDEEVMCIG  384 (390)
Q Consensus       353 ~~c~~l~~~~~~~l~~~~~~l~~~~~~~~~~~  384 (390)
                      + |  +++.++..+...+|++++.......++
T Consensus       234 ~-~--~~d~~l~~l~~~lp~L~i~~~~ls~~~  262 (284)
T d2astb2         234 G-I--VPDGTLQLLKEALPHLQINCSHFTTIA  262 (284)
T ss_dssp             T-S--SCTTCHHHHHHHSTTSEESCCCSCCTT
T ss_pred             C-C--CCHHHHHHHHHhCccccccCccCCCCC
Confidence            8 7  888888888888998888665554443

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure