Citrus Sinensis ID: 016423
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | 2.2.26 [Sep-21-2011] | |||||||
| A1DLW4 | 216 | Hsp70 nucleotide exchange | N/A | no | 0.415 | 0.75 | 0.280 | 1e-11 | |
| Q4WDH3 | 216 | Hsp70 nucleotide exchange | yes | no | 0.394 | 0.712 | 0.282 | 6e-11 | |
| Q1E3S4 | 212 | Hsp70 nucleotide exchange | N/A | no | 0.394 | 0.726 | 0.294 | 2e-10 | |
| Q4P7F2 | 285 | Hsp70 nucleotide exchange | N/A | no | 0.482 | 0.659 | 0.281 | 2e-10 | |
| Q6C239 | 280 | Hsp70 nucleotide exchange | yes | no | 0.328 | 0.457 | 0.310 | 6e-10 | |
| Q0CH70 | 212 | Hsp70 nucleotide exchange | N/A | no | 0.387 | 0.712 | 0.286 | 7e-10 | |
| Q4I624 | 213 | Hsp70 nucleotide exchange | yes | no | 0.392 | 0.718 | 0.289 | 1e-09 | |
| A2R4I6 | 287 | Hsp70 nucleotide exchange | yes | no | 0.276 | 0.376 | 0.330 | 2e-09 | |
| Q2GXZ7 | 267 | Hsp70 nucleotide exchange | N/A | no | 0.276 | 0.404 | 0.319 | 3e-09 | |
| Q32KV6 | 462 | Nucleotide exchange facto | yes | no | 0.410 | 0.346 | 0.303 | 1e-08 |
| >sp|A1DLW4|FES1_NEOFI Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fes1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 78 SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI 137
+++ +L+W+I +S A+ A D +P+ + + + L PSDA L++ A+
Sbjct: 4 NMNNLLKWSIENSTSAR---QAADSNDAAPAPTSRSNLNPEMLSALFGGPSDADLMKAAM 60
Query: 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANG------------QLNHPDTDIRKISAWI 185
+ L++ + LE+ A L+E IDNAN L H + ++R+++AW
Sbjct: 61 EALHSDEVDLENKMIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAWC 120
Query: 186 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAGQEMF 242
+G A QNN Q +++ L L+ M S A KA+Y +SS +RN + F
Sbjct: 121 IGTAVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMDEF 178
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117) |
| >sp|Q4WDH3|FES1_ASPFU Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=fes1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 78 SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI 137
+++ +L+W+I +S A+ A + P+ + + + L PSDA L++ A+
Sbjct: 4 NMNNLLKWSIENSTSAR---QAGNSNGTGPAPASRSNLNPEMLSALFGGPSDADLMKAAM 60
Query: 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANG------------QLNHPDTDIRKISAWI 185
+ L++ + LE+ A L+E IDNAN L H + ++R+++AW
Sbjct: 61 EALHSDEVDLENKMIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAWC 120
Query: 186 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRN 234
+G A QNN Q +++ L L+ M S A KA+Y +SS +RN
Sbjct: 121 IGTAVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRN 170
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) |
| >sp|Q1E3S4|FES1_COCIM Hsp70 nucleotide exchange factor FES1 OS=Coccidioides immitis (strain RS) GN=FES1 PE=3 SV=2 | Back alignment and function description |
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Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 93/173 (53%), Gaps = 19/173 (10%)
Query: 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
S ++ +L+W+I +S PA+ + Q Q S L + ++ L+ PSDA L++ A
Sbjct: 3 SHMNNLLKWSIENSVPAQPDDPEQVKQERSLDRLDTQALQ--RLLSN--APSDADLMKAA 58
Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANGQ------------LNHPDTDIRKISAW 184
++ +++ +LE+ A L+E +DNAN L+ + +RK++AW
Sbjct: 59 MEVVSDDFATLENKLIAFDNFEQLIENLDNANNMGVLGLWTPLVEALSDAEPQMRKMAAW 118
Query: 185 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV--KALYTVSSLIRNN 235
+G A QNN + Q ++L+ A+ KL+ + K+ + V KA+Y +SS +RN+
Sbjct: 119 CIGTAVQNNEMAQNKLLDFKAVPKLLSLAKTD-PDTTVRRKAIYALSSAVRNH 170
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Coccidioides immitis (strain RS) (taxid: 246410) |
| >sp|Q4P7F2|FES1_USTMA Hsp70 nucleotide exchange factor FES1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=FES1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 25/213 (11%)
Query: 82 MLQWAIGHSDPAKLKETA-QDVQRLSPSELKKRQMEIKE--LMEKLKTPSDAQL----IQ 134
+L+W + +S + A Q V+++S R+ ++ + L + S+AQ+ +
Sbjct: 10 LLKWGLANSGSTGVASFASQSVEQISADIEAGRRPDLADPNLYNAIMGKSEAQMMAEELS 69
Query: 135 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQ------------LNHPDTDIRKIS 182
+AID ++ +L D AL +L+E IDNAN L+ P+ +I+ +
Sbjct: 70 VAID----TSRTLPDRMTALDNFEMLIEQIDNANNMTSMKMWSPIISLLSAPEAEIQTAA 125
Query: 183 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 242
AWI+G A QNN Q VL+ ++ L+ ++ S E KA+Y +S L+++N A F
Sbjct: 126 AWIIGTAVQNNDKAQMAVLDFHPVAALLDLLHSHVDEVRAKAMYALSGLLKHNPAAMHQF 185
Query: 243 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 275
G ML L + + +R RK L+ L
Sbjct: 186 DQLDGWNMLNMALVDPNLGLR--RKTAFLINAL 216
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) |
| >sp|Q6C239|FES1_YARLI Hsp70 nucleotide exchange factor FES1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FES1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 17/145 (11%)
Query: 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHP 174
P DAQL+ A+ + LED + A +LVE +DNAN QL+ P
Sbjct: 33 PDDAQLMVQAMVVITQPDNKLEDKEVAFDNFEMLVENLDNANMMKNLKLWEPLLAQLSSP 92
Query: 175 DTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSFVEEAVKALYTVSSLI 232
++K++AW++ A+QNNP Q+ ++E G + KL+ + E VK+L+ ++S I
Sbjct: 93 HPSLQKLAAWVVATATQNNPKSQEALVEQGDAGIKKLVDLTSHDDPEVVVKSLFALASAI 152
Query: 233 RNNLAGQEMFYVEAGDLMLQDILGN 257
RN ++F G L+ ++G+
Sbjct: 153 RNCDDAYKLFESADG---LKKVVGH 174
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
| >sp|Q0CH70|FES1_ASPTN Hsp70 nucleotide exchange factor fes1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fes1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 20/171 (11%)
Query: 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
++++ +L+W+I +S A + A ++ R + + + PSDA L++ +
Sbjct: 3 ANMNKILKWSIQNSTNASSDQNAA-------ADATSRGLTPEMMATLFGGPSDADLMKAS 55
Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANGQ------------LNHPDTDIRKISAW 184
++ L + + LE+ A L+E IDNAN L H + D+R+++AW
Sbjct: 56 MEALRSDEVDLENKLVAFDNFEQLIESIDNANNLEPLGLWTPLVELLRHEEADMRRMAAW 115
Query: 185 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRN 234
+G A QNN Q +++ L AL L+ M S A KA+Y +SS +RN
Sbjct: 116 CVGTAVQNNEKAQDKLVVLNALPTLVAMSTSDPNPAARKKAVYALSSAVRN 166
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663) |
| >sp|Q4I624|FES1_GIBZE Hsp70 nucleotide exchange factor FES1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=FES1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 30/183 (16%)
Query: 79 IDGMLQWAIGHSDPAKLKETAQDVQ-RLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIA 136
++ +L+W+I S+ K A + +L+P ELM L PSDA L++ +
Sbjct: 6 LNELLKWSIEQSEATKNDPDAPPAKTQLTP-----------ELMAALMGGPSDADLMKAS 54
Query: 137 IDDL---NNSTLSLEDSQRALQELLILVEPIDNANG------------QLNHPDTDIRKI 181
++ + N +SL+D A L+E +DNAN QL H + ++RK+
Sbjct: 55 MEIITSDNAEEVSLDDKLVAFDNFEQLIENLDNANNIANLSLWTPLLDQLKHEEREMRKM 114
Query: 182 SAWILGKASQNNPLVQKQVLELGALSKLMKMV--KSSFVEEAVKALYTVSSLIRNNLAGQ 239
+AW +G A QNN Q+++L +G + L+ + + V+ KA+Y +SS +RN
Sbjct: 115 AAWCVGTAVQNNEKTQERLLAVGGVPMLVDLATKEDEPVDVRRKAVYALSSAVRNYQPAM 174
Query: 240 EMF 242
++F
Sbjct: 175 DLF 177
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533) |
| >sp|A2R4I6|FES1_ASPNC Hsp70 nucleotide exchange factor fes1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fes1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 13/121 (10%)
Query: 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQ------------LNHP 174
PS+A L++ A++ L + + LE+ A L+E IDNAN L+H
Sbjct: 55 PSEADLMKAAMEALRSDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLDHK 114
Query: 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIR 233
+ D+R+++AW +G A QNN Q +++ L AL KL+ + + KA+Y +SS +R
Sbjct: 115 EPDMRRMAAWCIGTAVQNNEKAQDKLIVLNALPKLVSLATADTTPVVRKKAVYAISSAVR 174
Query: 234 N 234
N
Sbjct: 175 N 175
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) |
| >sp|Q2GXZ7|FES1_CHAGB Hsp70 nucleotide exchange factor FES1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=FES1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 14/122 (11%)
Query: 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHP 174
PS+A+L++ A++ L + + +L++ A L+E +DNAN G L H
Sbjct: 81 PSEAELMKAAMEVLTDKSATLDNQLIAFDNFEQLIESLDNANNLEPLKLWAPLLGLLAHD 140
Query: 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV--KALYTVSSLI 232
+ ++R+++AW +G A QNN Q+++L G L L+ + + AV KA+Y +SS +
Sbjct: 141 EAEMRRMAAWCVGTAVQNNARTQERLLAEGGLPILVGLATKEGEDVAVRRKAIYALSSAV 200
Query: 233 RN 234
RN
Sbjct: 201 RN 202
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901) |
| >sp|Q32KV6|SIL1_BOVIN Nucleotide exchange factor SIL1 OS=Bos taurus GN=SIL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 21/181 (11%)
Query: 109 ELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA- 167
ELKK E+ ++E +D Q++ I+ N+S+ SLE+ AL +L V +DNA
Sbjct: 167 ELKKDFEELNVVIE-----TDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQ 221
Query: 168 ------------NGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 215
NG LN + +++ +A++LG A +NP VQ + +E GAL KL+ ++ +
Sbjct: 222 DLLSFGGLQVVING-LNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILAT 280
Query: 216 -SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 274
+ KAL+ + SL+R+ Q+ F G +L+ ++ E+ L + V+L+ D
Sbjct: 281 EQPLTTKKKALFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKGMEV-LAVRVVTLLYD 339
Query: 275 L 275
L
Sbjct: 340 L 340
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Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | ||||||
| 359473854 | 395 | PREDICTED: hsp70 nucleotide exchange fac | 0.920 | 0.908 | 0.719 | 1e-148 | |
| 255543300 | 395 | sil1, putative [Ricinus communis] gi|223 | 0.938 | 0.926 | 0.689 | 1e-146 | |
| 224053615 | 400 | predicted protein [Populus trichocarpa] | 0.894 | 0.872 | 0.694 | 1e-139 | |
| 296085572 | 320 | unnamed protein product [Vitis vinifera] | 0.769 | 0.937 | 0.759 | 1e-129 | |
| 449445798 | 395 | PREDICTED: nucleotide exchange factor SI | 0.951 | 0.939 | 0.631 | 1e-126 | |
| 297819910 | 382 | binding protein [Arabidopsis lyrata subs | 0.923 | 0.942 | 0.603 | 1e-123 | |
| 15231095 | 382 | nucleotide exchange factor SIL1 [Arabido | 0.923 | 0.942 | 0.590 | 1e-121 | |
| 356574918 | 372 | PREDICTED: nucleotide exchange factor SI | 0.897 | 0.940 | 0.592 | 1e-111 | |
| 307135818 | 444 | SIL1 [Cucumis melo subsp. melo] | 0.925 | 0.813 | 0.529 | 1e-110 | |
| 357462195 | 378 | Nucleotide exchange factor SIL1 [Medicag | 0.797 | 0.822 | 0.631 | 1e-102 |
| >gi|359473854|ref|XP_002269010.2| PREDICTED: hsp70 nucleotide exchange factor FES1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/374 (71%), Positives = 306/374 (81%), Gaps = 15/374 (4%)
Query: 20 MITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSI 79
+ + +A+RVN SSS GLFWSTAKE+ D RK+E + + VND+ +LDGGFSS+
Sbjct: 17 FVGAVMAQADRVNKSSSGGLFWSTAKEEGDLMRKSEAQESTVG---VNDNADLDGGFSSL 73
Query: 80 DGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 139
DGMLQWAIGHSDP KLKETAQDVQR SP+ELKKRQMEIKELMEKLK PSDAQL+QIAI D
Sbjct: 74 DGMLQWAIGHSDPTKLKETAQDVQRFSPNELKKRQMEIKELMEKLKMPSDAQLMQIAIAD 133
Query: 140 LNNSTLSLEDSQRALQELLILVEPIDNANG------------QLNHPDTDIRKISAWILG 187
LNNS+L +ED RALQELLILVEPIDNAN +L++PD +IRK SAWILG
Sbjct: 134 LNNSSLPMEDHHRALQELLILVEPIDNANDLNKLGGLTVVIRELDNPDPEIRKTSAWILG 193
Query: 188 KASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
KASQNNP+VQKQVLELGAL KLMKMV SSFVEEA KALY VS+LIRNNLA QE+FY +AG
Sbjct: 194 KASQNNPVVQKQVLELGALPKLMKMVNSSFVEEATKALYAVSALIRNNLAAQELFYAKAG 253
Query: 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 307
DLMLQDIL N S +IRL RK V LVGDLA+CQLE+ HK E P F +R FLKSVVDLTAS+
Sbjct: 254 DLMLQDILSNPSIDIRLRRKTVFLVGDLAECQLESTHKAELPFFSNRHFLKSVVDLTASS 313
Query: 308 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVE 367
DLDLQEKAL A+KNLLQLRTTEALV KD+C LD ALER+R+QLQ++M EE QRDY MD+E
Sbjct: 314 DLDLQEKALIAVKNLLQLRTTEALVFKDYCDLDGALERMRKQLQQLMDEEYQRDYVMDLE 373
Query: 368 ALRREVELIFFRKL 381
+L REVELIF +KL
Sbjct: 374 SLCREVELIFHKKL 387
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543300|ref|XP_002512713.1| sil1, putative [Ricinus communis] gi|223548674|gb|EEF50165.1| sil1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/380 (68%), Positives = 316/380 (83%), Gaps = 14/380 (3%)
Query: 15 LLVLLMITMAIGRAERVNNSSSA-GLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELD 73
L+ +++ITM + ER+N SSS+ G+FWST KE+ D RKAE ++D +AAA+VNDHD LD
Sbjct: 9 LVTVILITM-VAEGERLNKSSSSSGVFWSTVKEESDLLRKAEPDEDPSAAAVVNDHDHLD 67
Query: 74 GGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLI 133
GGFSS+DGMLQWA+GHSDP KLKETAQDV+RLSP++LK RQ+EIKELM++LK PSDA L+
Sbjct: 68 GGFSSLDGMLQWAVGHSDPEKLKETAQDVRRLSPTDLKNRQLEIKELMDELKMPSDAHLM 127
Query: 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANG------------QLNHPDTDIRKI 181
Q AI+DL+NS+L LED RALQELLILVEPIDNAN +LNHPD++IR+I
Sbjct: 128 QNAINDLSNSSLPLEDHHRALQELLILVEPIDNANDLSKLGGLGVLIRELNHPDSNIRRI 187
Query: 182 SAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 241
SAW+LGKASQNNP VQKQVLE+GAL+KLM+MVKS+ EE +KALY VS+LIRNNLAGQE+
Sbjct: 188 SAWVLGKASQNNPFVQKQVLEMGALNKLMQMVKSNCAEEGIKALYAVSALIRNNLAGQEL 247
Query: 242 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 301
FY EAGD MLQ+ILG+SS +IRL RKAV LV DLA+CQLEN+ + E P F +RFFLKSVV
Sbjct: 248 FYAEAGDQMLQEILGDSSTDIRLRRKAVFLVADLAECQLENVGRAELPFFSNRFFLKSVV 307
Query: 302 DLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRD 361
DL +S DLDLQEKAL A+KNLLQL+T EA V+KDFCGLD ALER+RQQL +M +E RD
Sbjct: 308 DLVSSTDLDLQEKALVAVKNLLQLKTIEASVIKDFCGLDGALERMRQQLHVLMTQETYRD 367
Query: 362 YAMDVEALRREVELIFFRKL 381
YA D+E+LRREVELIF+ KL
Sbjct: 368 YATDIESLRREVELIFYSKL 387
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053615|ref|XP_002297899.1| predicted protein [Populus trichocarpa] gi|222845157|gb|EEE82704.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 252/363 (69%), Positives = 301/363 (82%), Gaps = 14/363 (3%)
Query: 33 NSSSAGLFWSTAKEDEDQPRKAE--RNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHS 90
S++AGL WST K++ D KAE +DDS+AAA+VNDHD+LDGGFSS++GML WAIGHS
Sbjct: 30 TSATAGLLWSTGKDEPDLLSKAEPENSDDSSAAAVVNDHDDLDGGFSSLEGMLHWAIGHS 89
Query: 91 DPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDS 150
DP KLKE A+DVQRLS SEL+KRQ+E+KELMEK+K PSDA+L+ +AIDDLNNS+ SLED
Sbjct: 90 DPTKLKENAEDVQRLSASELQKRQIELKELMEKMKMPSDAELMHMAIDDLNNSSSSLEDR 149
Query: 151 QRALQELLILVEPIDNANG------------QLNHPDTDIRKISAWILGKASQNNPLVQK 198
QRALQELLILVEP+DNAN +L+HPD DIR++SAW+LGKA QNN VQK
Sbjct: 150 QRALQELLILVEPLDNANDLNKLGGLAIVIQELDHPDHDIRRLSAWVLGKACQNNAAVQK 209
Query: 199 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 258
Q+LELGALSKL+KMVKSS +EEA+KALY VS+LI+N+LAGQE FY E GD MLQ+IL NS
Sbjct: 210 QILELGALSKLIKMVKSSSIEEAIKALYAVSTLIQNHLAGQEFFYAEDGDAMLQEILSNS 269
Query: 259 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 318
S +IRL RKAVS+V DLA+ QLEN+ + E P FR+RFFLKSVVDLTAS DLDLQEKAL A
Sbjct: 270 SNDIRLLRKAVSVVADLAEYQLENIIRAESPCFRNRFFLKSVVDLTASTDLDLQEKALVA 329
Query: 319 IKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFF 378
+KNLLQL+TT+ALVLKD C LD +LER+R+QL ++M EED RDYA+D+E LR EVELIF
Sbjct: 330 VKNLLQLKTTDALVLKDLCNLDGSLERMRRQLLDLMAEEDHRDYAVDLETLRGEVELIFH 389
Query: 379 RKL 381
KL
Sbjct: 390 EKL 392
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085572|emb|CBI29304.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/312 (75%), Positives = 263/312 (84%), Gaps = 12/312 (3%)
Query: 82 MLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLN 141
MLQWAIGHSDP KLKETAQDVQR SP+ELKKRQMEIKELMEKLK PSDAQL+QIAI DLN
Sbjct: 1 MLQWAIGHSDPTKLKETAQDVQRFSPNELKKRQMEIKELMEKLKMPSDAQLMQIAIADLN 60
Query: 142 NSTLSLEDSQRALQELLILVEPIDNANG------------QLNHPDTDIRKISAWILGKA 189
NS+L +ED RALQELLILVEPIDNAN +L++PD +IRK SAWILGKA
Sbjct: 61 NSSLPMEDHHRALQELLILVEPIDNANDLNKLGGLTVVIRELDNPDPEIRKTSAWILGKA 120
Query: 190 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249
SQNNP+VQKQVLELGAL KLMKMV SSFVEEA KALY VS+LIRNNLA QE+FY +AGDL
Sbjct: 121 SQNNPVVQKQVLELGALPKLMKMVNSSFVEEATKALYAVSALIRNNLAAQELFYAKAGDL 180
Query: 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL 309
MLQDIL N S +IRL RK V LVGDLA+CQLE+ HK E P F +R FLKSVVDLTAS+DL
Sbjct: 181 MLQDILSNPSIDIRLRRKTVFLVGDLAECQLESTHKAELPFFSNRHFLKSVVDLTASSDL 240
Query: 310 DLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEAL 369
DLQEKAL A+KNLLQLRTTEALV KD+C LD ALER+R+QLQ++M EE QRDY MD+E+L
Sbjct: 241 DLQEKALIAVKNLLQLRTTEALVFKDYCDLDGALERMRKQLQQLMDEEYQRDYVMDLESL 300
Query: 370 RREVELIFFRKL 381
REVELIF +KL
Sbjct: 301 CREVELIFHKKL 312
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445798|ref|XP_004140659.1| PREDICTED: nucleotide exchange factor SIL1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 248/393 (63%), Positives = 301/393 (76%), Gaps = 22/393 (5%)
Query: 4 RRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDED---QPRKAERNDDS 60
RR+ + LW + L+I A N+SS GL WS+AK++ D R E + +
Sbjct: 2 RRSLVVGLCLWFSLTLVIVDA-------NDSSLEGLIWSSAKQEGDLLIDHRPQEDSSAA 54
Query: 61 TAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKEL 120
AA++V+D D DGGFSS+D MLQWAIGHSDPAKLK+TAQDV+RLSP+E+KKRQ EIK+L
Sbjct: 55 AAASVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPNEIKKRQEEIKDL 114
Query: 121 MEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANG----------- 169
+E+LK PSDA+L+QIA+DDL NS+LSLED RALQELL+LVEPIDNAN
Sbjct: 115 IEELKLPSDAKLMQIAVDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAVLT 174
Query: 170 -QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTV 228
+LNH D D+RKI+AWILGKASQNNP+VQKQVLELGAL+KL+ M KS FVEEA+KALY +
Sbjct: 175 RELNHVDPDVRKIAAWILGKASQNNPIVQKQVLELGALAKLVSMAKSDFVEEAIKALYAI 234
Query: 229 SSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 288
SSL++NNL+GQE+FY EAG++MLQDIL NSS +IRL +KAV LV DLA QLE + E
Sbjct: 235 SSLVQNNLSGQELFYAEAGEIMLQDILSNSSMDIRLQKKAVFLVSDLAVTQLEKPDEAER 294
Query: 289 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 348
P F DR FLKSVV+L S D+DLQEKAL A+KNLL LRTT+A VLK+FCGLD ALER+R
Sbjct: 295 PFFGDRLFLKSVVNLIHSTDIDLQEKALIALKNLLLLRTTKAQVLKEFCGLDAALERMRM 354
Query: 349 QLQEVMLEEDQRDYAMDVEALRREVELIFFRKL 381
+L+ +M EED RDYAMDVE LR +VEL F KL
Sbjct: 355 KLKVLMEEEDHRDYAMDVEDLRSQVELTFLEKL 387
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297819910|ref|XP_002877838.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323676|gb|EFH54097.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/383 (60%), Positives = 295/383 (77%), Gaps = 23/383 (6%)
Query: 11 RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
R + LLV++ + + AE+VN SS G+ WSTA+++ AE +DS ++ + D
Sbjct: 8 RCMLLLVVISL-VGCSIAEKVN--SSGGIVWSTARDE------AELVEDS--GVVIGEQD 56
Query: 71 ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 130
++DGGFSS+DGML WAIGHSDPA LKE A+D +++S EL+KRQ+E+KEL+EKLK PSDA
Sbjct: 57 QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSDA 116
Query: 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDI 178
L+QIAIDDL NS+LSLED RALQELLILVEPIDNAN G+LNH DT++
Sbjct: 117 NLMQIAIDDLKNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176
Query: 179 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 238
RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSDEEAVKALFAVSALIRNNIAG 236
Query: 239 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 298
Q+MFY G +ML+D++ N S +I+L RKAV LVGDLA+ QL+N K E P+F+DRFFLK
Sbjct: 237 QDMFYAAHGYIMLKDVMSNGSLDIKLRRKAVFLVGDLAESQLQNTGKDELPIFKDRFFLK 296
Query: 299 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 358
SVVDL DLDLQEKAL AI+ LLQL++ E +LK+FCGL+ LER++ QL+E M +E
Sbjct: 297 SVVDLIVVLDLDLQEKALTAIQTLLQLKSIEPQILKEFCGLEETLERMKLQLEESMADEY 356
Query: 359 QRDYAMDVEALRREVELIFFRKL 381
+RDYA DVE++R EVELIF +KL
Sbjct: 357 KRDYAADVESIRGEVELIFRQKL 379
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231095|ref|NP_190766.1| nucleotide exchange factor SIL1 [Arabidopsis thaliana] gi|4678927|emb|CAB41318.1| hypothetical protein [Arabidopsis thaliana] gi|20268764|gb|AAM14085.1| unknown protein [Arabidopsis thaliana] gi|21689669|gb|AAM67456.1| unknown protein [Arabidopsis thaliana] gi|332645350|gb|AEE78871.1| nucleotide exchange factor SIL1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/383 (59%), Positives = 296/383 (77%), Gaps = 23/383 (6%)
Query: 11 RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
R ++LLV++ + + AE+VN SS G+ WS+ +++ AE +DS ++ + D
Sbjct: 8 RYVFLLVVISL-VGFSIAEKVN--SSGGMVWSSVRDE------AELVEDS--GVVIGEQD 56
Query: 71 ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 130
++DGGFSS+DGML WAIGHSDPA LKE A+D +++S EL+KRQ+E+KEL+EKLK PS+A
Sbjct: 57 QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSNA 116
Query: 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDI 178
+L+QIAIDDLNNS+LSLED RALQELLILVEPIDNAN G+LNH DT++
Sbjct: 117 KLMQIAIDDLNNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176
Query: 179 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 238
RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSTEEAVKALFAVSALIRNNIAG 236
Query: 239 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 298
Q++F+ G +ML+D++ N S +++L RKAV LVGDLA+ QL+N K E P+F+DR FLK
Sbjct: 237 QDLFFAAHGYIMLRDVMNNGSLDMKLRRKAVFLVGDLAESQLQNTEKDELPIFKDRLFLK 296
Query: 299 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 358
SVVDL DLDLQEKAL AI+ LLQL++ E VLK+ CGL+ ALER++ QL+E M +E
Sbjct: 297 SVVDLIVVLDLDLQEKALTAIQTLLQLKSIEPQVLKESCGLEEALERMKLQLEESMADEY 356
Query: 359 QRDYAMDVEALRREVELIFFRKL 381
+RDYA DVE++R EVELIF +KL
Sbjct: 357 KRDYAADVESIRGEVELIFRQKL 379
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574918|ref|XP_003555590.1| PREDICTED: nucleotide exchange factor SIL1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/385 (59%), Positives = 266/385 (69%), Gaps = 35/385 (9%)
Query: 16 LVLLMITMAI----GRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDE 71
L LL T A+ G AE N +S GL WSTA E+ D +
Sbjct: 7 LSLLFFTAAVAAETGGAE--PNLTSGGLLWSTAAEESDLAPPPD---------------- 48
Query: 72 LDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQ 131
DGGFSS+DGMLQWAI HSDP KLKE+A+ QRL PSEL KRQ EIKE+MEK+K PSDA+
Sbjct: 49 -DGGFSSLDGMLQWAISHSDPGKLKESAEAQQRLPPSELYKRQFEIKEIMEKMKMPSDAE 107
Query: 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANG------------QLNHPDTDIR 179
L++IAI DLNN + SLED RALQELL LVE IDNAN +L D IR
Sbjct: 108 LMRIAISDLNNVSTSLEDRHRALQELLELVESIDNANDLSKLGGLLAVREELYCSDPGIR 167
Query: 180 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 239
I+AW+LGKASQNN +VQ+Q+LELG LS+LMKMV S+ +EEA KALY VS+LIRN+LA Q
Sbjct: 168 TIAAWVLGKASQNNAIVQQQILELGVLSRLMKMVNSNSMEEANKALYAVSALIRNDLASQ 227
Query: 240 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 299
+FY EAG MLQDIL N+S ++RL RKAV L+ DLA QLEN+ + E P F D+ LK+
Sbjct: 228 GLFYAEAGGWMLQDILSNTSLDVRLRRKAVRLLADLAAYQLENVDREEQPFFNDQDLLKA 287
Query: 300 VVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQ 359
VVDLT S DLDLQEKAL AIK+LLQLRTTEA V KDFC L AL R+RQ L ++M +E Q
Sbjct: 288 VVDLTTSTDLDLQEKALVAIKSLLQLRTTEARVFKDFCALGDALNRMRQLLHDLMADEYQ 347
Query: 360 RDYAMDVEALRREVELIFFRKLDDS 384
RDY MDVE LR EVE F RKL S
Sbjct: 348 RDYVMDVENLRVEVEHTFQRKLKQS 372
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307135818|gb|ADN33690.1| SIL1 [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 241/455 (52%), Positives = 291/455 (63%), Gaps = 94/455 (20%)
Query: 4 RRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAA 63
RR+ + LW + L+I A N+SS GL WS+AKED + AA
Sbjct: 2 RRSLVVGLCLWFSLTLVIADA-------NDSSLEGLIWSSAKEDSA----------AAAA 44
Query: 64 AIVNDHDELDG-------------------------------GFSSIDGMLQ-------- 84
+V+D D DG G SI M++
Sbjct: 45 PVVHDADGFDGGFSSLDSMLQWAIGPVTKQGLPDNSIDVSFAGLHSIRAMIEEFLLHPPS 104
Query: 85 ----------------WAI----------GHSDPAKLKETAQDVQRLSPSELKKRQMEIK 118
W I GHSDPAKLK+TAQDV++LSPSE+KKRQ EIK
Sbjct: 105 RDKGVFLWLAEVCAVVWYIWGERNDRVFWGHSDPAKLKDTAQDVKQLSPSEIKKRQEEIK 164
Query: 119 ELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANG--------- 169
+L+E+LK PSDA+L+QIA+DDL NS+LSLED RALQELL+LVEPIDNAN
Sbjct: 165 DLIEELKLPSDAKLMQIAVDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAV 224
Query: 170 ---QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALY 226
+LNH D D+RKI+AWILGKASQNNP+VQKQVLELGAL+KL+ MVKS FVEEA+KALY
Sbjct: 225 LTRELNHVDPDVRKIAAWILGKASQNNPIVQKQVLELGALAKLVSMVKSDFVEEAIKALY 284
Query: 227 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 286
+SSL++NNL+GQ++FY EAG+ MLQDIL NSS +IRL +KAV L DL QLE +
Sbjct: 285 AISSLVQNNLSGQKLFYAEAGETMLQDILSNSSMDIRLQKKAVFLASDLTVTQLEKPDEA 344
Query: 287 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 346
E P F DRFFLKSVV+L S D+DLQEKAL A+KNLL LRTT+A VLK+FCGLD ALER+
Sbjct: 345 ERPFFGDRFFLKSVVNLIHSTDIDLQEKALIALKNLLLLRTTKAQVLKEFCGLDAALERM 404
Query: 347 RQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKL 381
R +L+ +M EED RDYAMDVE LR +VE IF KL
Sbjct: 405 RMKLKVLMEEEDHRDYAMDVEDLRSQVEQIFLEKL 439
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462195|ref|XP_003601379.1| Nucleotide exchange factor SIL1 [Medicago truncatula] gi|355490427|gb|AES71630.1| Nucleotide exchange factor SIL1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/323 (63%), Positives = 247/323 (76%), Gaps = 12/323 (3%)
Query: 73 DGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQL 132
DGGF S+D ML WAI HSDP KLKE+AQ Q+LSPSEL+KRQ+EIKE+MEK K SDA+L
Sbjct: 55 DGGFPSMDSMLHWAISHSDPEKLKESAQSHQKLSPSELQKRQLEIKEIMEKTKMLSDAEL 114
Query: 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANG------------QLNHPDTDIRK 180
++IAI DLNN++ SLED RAL ELL LVEP+DNAN +L H D+ IR
Sbjct: 115 MKIAIKDLNNASTSLEDRYRALLELLELVEPLDNANDLNKLGGLHAVTQELKHYDSGIRA 174
Query: 181 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 240
+AW+LGKASQNNP Q+QVLELG LS+L+ MVKSS +EE +KALY VS+L RNNLA QE
Sbjct: 175 TAAWVLGKASQNNPTFQQQVLELGVLSRLIAMVKSSSIEEGIKALYAVSALTRNNLANQE 234
Query: 241 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 300
+FY E G LMLQDIL N+S +I+L RKAV L+ DLA QLEN++K EPP F ++ LKSV
Sbjct: 235 LFYAEGGGLMLQDILRNASIDIKLRRKAVLLLTDLADYQLENVNKDEPPFFNNQDLLKSV 294
Query: 301 VDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQR 360
VDLTAS DLDLQEKAL AIK+LLQLRTT+A V +D C L AL R ++ L ++M +EDQR
Sbjct: 295 VDLTASTDLDLQEKALVAIKSLLQLRTTKARVFRDLCALGDALNRTKELLHDLMADEDQR 354
Query: 361 DYAMDVEALRREVELIFFRKLDD 383
DY MDVE +R EVE I+ RKL++
Sbjct: 355 DYVMDVENVRIEVESIYHRKLEN 377
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | ||||||
| TAIR|locus:2083800 | 382 | AT3G51980 "AT3G51980" [Arabido | 0.923 | 0.942 | 0.590 | 1.1e-110 | |
| TAIR|locus:2185113 | 324 | Fes1C "Fes1C" [Arabidopsis tha | 0.656 | 0.790 | 0.294 | 3.5e-13 | |
| TAIR|locus:2084365 | 363 | Fes1B "Fes1B" [Arabidopsis tha | 0.666 | 0.716 | 0.285 | 2.3e-12 | |
| TAIR|locus:2083559 | 363 | Fes1A "Fes1A" [Arabidopsis tha | 0.712 | 0.765 | 0.254 | 3.9e-12 | |
| UNIPROTKB|F1NWG7 | 380 | SIL1 "Uncharacterized protein" | 0.674 | 0.692 | 0.27 | 3.9e-10 | |
| ASPGD|ASPL0000004813 | 218 | AN6543 [Emericella nidulans (t | 0.402 | 0.720 | 0.264 | 4.5e-10 | |
| UNIPROTKB|Q32KV6 | 462 | SIL1 "Nucleotide exchange fact | 0.746 | 0.629 | 0.273 | 2.9e-09 | |
| MGI|MGI:1932040 | 465 | Sil1 "endoplasmic reticulum ch | 0.735 | 0.617 | 0.294 | 1.1e-08 | |
| CGD|CAL0000409 | 284 | orf19.3649 [Candida albicans ( | 0.517 | 0.711 | 0.278 | 1.4e-08 | |
| RGD|735103 | 465 | Sil1 "SIL1 homolog, endoplasmi | 0.448 | 0.376 | 0.314 | 4.9e-08 |
| TAIR|locus:2083800 AT3G51980 "AT3G51980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
Identities = 226/383 (59%), Positives = 296/383 (77%)
Query: 11 RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
R ++LLV++ + + AE+VN SS G+ WS+ +++ AE +DS ++ + D
Sbjct: 8 RYVFLLVVISL-VGFSIAEKVN--SSGGMVWSSVRDE------AELVEDS--GVVIGEQD 56
Query: 71 ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 130
++DGGFSS+DGML WAIGHSDPA LKE A+D +++S EL+KRQ+E+KEL+EKLK PS+A
Sbjct: 57 QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSNA 116
Query: 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDI 178
+L+QIAIDDLNNS+LSLED RALQELLILVEPIDNAN G+LNH DT++
Sbjct: 117 KLMQIAIDDLNNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176
Query: 179 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 238
RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSTEEAVKALFAVSALIRNNIAG 236
Query: 239 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 298
Q++F+ G +ML+D++ N S +++L RKAV LVGDLA+ QL+N K E P+F+DR FLK
Sbjct: 237 QDLFFAAHGYIMLRDVMNNGSLDMKLRRKAVFLVGDLAESQLQNTEKDELPIFKDRLFLK 296
Query: 299 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 358
SVVDL DLDLQEKAL AI+ LLQL++ E VLK+ CGL+ ALER++ QL+E M +E
Sbjct: 297 SVVDLIVVLDLDLQEKALTAIQTLLQLKSIEPQVLKESCGLEEALERMKLQLEESMADEY 356
Query: 359 QRDYAMDVEALRREVELIFFRKL 381
+RDYA DVE++R EVELIF +KL
Sbjct: 357 KRDYAADVESIRGEVELIFRQKL 379
|
|
| TAIR|locus:2185113 Fes1C "Fes1C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 195 (73.7 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 85/289 (29%), Positives = 139/289 (48%)
Query: 80 DGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 139
DG+L+W++ HSD + T Q + + Q + +++++LK + Q++Q
Sbjct: 9 DGLLKWSLSHSDGTR--PTCQLSEEDRKWFAEAMQSQTVDVVKRLKEIT--QVLQTPQQV 64
Query: 140 LNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILG 187
L ++ +D + L EL VE ID AN G L + + +IR SA ++
Sbjct: 65 LEAHEVTPQDIEGLLDELQEHVESIDMANDLHSVGGLVPLLGYLKNSNANIRAKSADVVS 124
Query: 188 KASQNNPLVQKQVLELGAL-SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246
+NNP Q+ V+E L S L++ + + +AL +SSLIRNN G F +
Sbjct: 125 TIVENNPRSQESVMEANGLESLLLRFTSDTDMHSRTQALGAISSLIRNNKPGITGFRIAN 184
Query: 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV-DLTA 305
G L+D L S +R RKA++L+ L + EN + + F L ++ L +
Sbjct: 185 GYSGLKDALETDS--VRFQRKALNLLHYLLQ---ENDSDSDIAI---EFGLHHLMMHLVS 236
Query: 306 SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTAL--ERLRQQLQE 352
S D D++E AA++ LL+L +A CG ERLRQ L++
Sbjct: 237 SFDADVRE---AALRGLLEL--VKARKDCSTCGSSIVKGDERLRQILKD 280
|
|
| TAIR|locus:2084365 Fes1B "Fes1B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 85/298 (28%), Positives = 137/298 (45%)
Query: 80 DGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 139
DG+L+W++ HSD A + R ++ Q + + ++K S Q++++
Sbjct: 9 DGLLKWSLSHSDGASSSSRISEEDR--QWFVEAMQAHTIDSISRMKVIS--QIMKMPEQV 64
Query: 140 LNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILG 187
L ++ +D + L EL VE ID AN L + + IR SA +L
Sbjct: 65 LEAQGVTPDDLEGMLAELQEHVESIDLANDLHSIGGLVPLLSYLKNSNAKIRAKSADVLT 124
Query: 188 KASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246
QNNP Q+ V+E L+ + + KAL +SSLIRNN G F +
Sbjct: 125 TVVQNNPRSQQLVMEANGFEPLLTNFIADPDIRVRTKALGAISSLIRNNQPGITAFRLAN 184
Query: 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 306
G L+D L + + +R RKA++L+ L Q N + + RD F + ++ L ++
Sbjct: 185 GYAGLRDALVSDT--VRFQRKALNLLHYLL--QESNS---DCKIVRDLGFPRIMIHLASN 237
Query: 307 ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE------VMLEED 358
D +++E AL + LL+L E++ LD LRQ L+E VM +ED
Sbjct: 238 QDFEVREFAL---RGLLELAREESVR-----NLDRGDVNLRQLLEERTRRIIVMSDED 287
|
|
| TAIR|locus:2083559 Fes1A "Fes1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 79/311 (25%), Positives = 152/311 (48%)
Query: 80 DGMLQWAIGHSDPAK-LKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAID 138
DG+L+W++ H+D + ++ +++ ++ ++ + +++ + M+++ ++Q
Sbjct: 9 DGLLKWSLSHADGTRPTRQLSEEDRKWFMEAMQSQTVDVVKRMKEITL-----VMQTPEQ 63
Query: 139 DLNNSTLSLEDSQRALQELLILVEPIDNANGQ------------LNHPDTDIRKISAWIL 186
L ++ ED Q L EL VE ID AN L + +IR +A ++
Sbjct: 64 VLVEHGVTPEDIQDLLDELQEHVESIDMANDLHSIGGLVPLLSFLKNSHANIRAKAADVV 123
Query: 187 GKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE 245
QNNP Q+ V+E AL L+ S + +AL +SSLIR+N G F +
Sbjct: 124 STIVQNNPRSQELVMETNALESLLSNFTSDTDIHARTQALGAISSLIRHNKPGVTAFKLA 183
Query: 246 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 305
G L+D L + S +R RKA++L+ L + + ++ + L F + ++ L +
Sbjct: 184 NGYAGLRDALASDS--VRFQRKALNLLQYLLQ-EDDSDRSIATGLG----FPRVMMHLAS 236
Query: 306 SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMD 365
S D +++E AA++ LL+L + +D + E+LRQ L+E ++ D
Sbjct: 237 SDDAEIRE---AALRGLLELSREKN---DGSSSIDKSDEKLRQLLEE-RIKGITLMSQED 289
Query: 366 VEALRREVELI 376
+E ++ E +L+
Sbjct: 290 LETVKEERQLV 300
|
|
| UNIPROTKB|F1NWG7 SIL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 171 (65.3 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 81/300 (27%), Positives = 141/300 (47%)
Query: 94 KLKETAQDVQRLSPSELKKRQME-IKELMEKL--KTPSDAQLIQIAIDDLNNSTLSLEDS 150
K E A+ + K R +E +KE EKL K +D +++ I N+S +L++
Sbjct: 64 KESEKAERMAHEEEVRKKFRPIEQLKEEFEKLNVKMETDYEIMDKLISKFNSSASTLDEK 123
Query: 151 QRALQELLILVEPIDNANG------------QLNHPDTDIRKISAWILGKASQNNPLVQK 198
AL +L V +DNA LN + +++ +A++LG A +NP VQ
Sbjct: 124 VAALYDLEYYVHQVDNAKDFLSMGGLRLVIEGLNSTEAVLKEHAAFVLGAALSSNPKVQI 183
Query: 199 QVLELGALSKLMKMVKSSFVEEAVK--ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL- 255
+ +E GAL KL+ +V + +AVK AL+ +SSL+R+ Q+ F G +L+ +
Sbjct: 184 EAIEGGALQKLLVIVATE-QPQAVKKKALFALSSLLRHFPYAQQQFLKLGGLQVLRGLFR 242
Query: 256 --GNSSFEIR----LHRKAVSLV-------GDLAKCQLENMHKVE-PPLFRDRFFLKSVV 301
G S+ +R L+ V + GD A+ +++ +V+ P ++ + +V
Sbjct: 243 QPGTSALCVRAVTLLYDLFVEKMLLEDSQHGDHAEEKVQQYRRVQLVPAVLEQDWCVAVP 302
Query: 302 DLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRD 361
L A + D +EK L A+ L++ + L L LR + +E+ E +RD
Sbjct: 303 GLLALPEHDAREKVLKAVAVLMEFCRER---FRGDAALGATLGLLRSEYEELAAAE-RRD 358
|
|
| ASPGD|ASPL0000004813 AN6543 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 46/174 (26%), Positives = 84/174 (48%)
Query: 78 SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI 137
+++ +L+W I +S + + + + S+ + + + L PS+A L++ A+
Sbjct: 4 NMNNLLKWGIQNSTATQQTSDSNN----NASQAPRSNITPEMLSALFGGPSEADLMKAAM 59
Query: 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANGQ------------LNHPDTDIRKISAWI 185
+ L + + LE+ A L+E IDNAN L H + D+R+++AW
Sbjct: 60 EALRSDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEPDMRRMAAWC 119
Query: 186 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAG 238
+G A QNN Q +++ + A+ L+ M V KA+Y +SS +RN G
Sbjct: 120 IGTAVQNNEKAQDKLIVMNAIPTLVSMSTQDPVPAVRKKAVYALSSAVRNYQPG 173
|
|
| UNIPROTKB|Q32KV6 SIL1 "Nucleotide exchange factor SIL1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 88/322 (27%), Positives = 154/322 (47%)
Query: 93 AKLKETAQDVQRLSPSELKKRQME-IKELMEKLKT--PSDAQLIQIAIDDLNNSTLSLED 149
A+++ + +D +R + + R +E +K+ E+L +D Q++ I+ N+S+ SLE+
Sbjct: 143 AEMENSKEDQERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVRLINKFNSSSSSLEE 202
Query: 150 SQRALQELLILVEPIDNA-------------NGQLNHPDTDIRKISAWILGKASQNNPLV 196
AL +L V +DNA NG LN + +++ +A++LG A +NP V
Sbjct: 203 KIAALFDLEYYVHQMDNAQDLLSFGGLQVVING-LNSTEPLVKEYAAFVLGAAFSSNPKV 261
Query: 197 QKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 255
Q + +E GAL KL+ ++ + + KAL+ + SL+R+ Q+ F G +L+ ++
Sbjct: 262 QVEAIEGGALQKLLVILATEQPLTTKKKALFALCSLLRHFPYAQQQFLKLGGLQVLRSLV 321
Query: 256 GNSSFEIRLHRKAVSLVGDLA--KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 313
E+ L + V+L+ DL K E ++ + R V L S LQE
Sbjct: 322 QEKGMEV-LAVRVVTLLYDLVTEKMFAEEDAELTWDMSPKRLQQYRQVHLLPS----LQE 376
Query: 314 KALAAIK-NLLQLRTTEAL--VLKDFCGL-DTALERLRQQLQ-EVMLEEDQRDY-AMDVE 367
+ I +LL L +A VL+ L T +R Q Q L Q +Y A+
Sbjct: 377 QGWCEITAHLLALPEHDAREKVLQTLGALLATCRDRFHQDTQLHRTLGTLQAEYQALAAL 436
Query: 368 ALRREVELIFFRKLDDSGSNMI 389
L+ + +FR+L DS +++
Sbjct: 437 ELQEGEDEGYFRELLDSIDSLL 458
|
|
| MGI|MGI:1932040 Sil1 "endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 160 (61.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 94/319 (29%), Positives = 150/319 (47%)
Query: 94 KLKETAQDVQRLSP-SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQR 152
+L A Q P ELKK E EL L+T D Q++ I+ N+S+ SLE+
Sbjct: 154 ELARQATVKQLFRPIEELKK---EFDELNVVLET--DMQIMVRLINKFNSSSSSLEEKVA 208
Query: 153 ALQELLILVEPIDNA-------------NGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 199
AL +L V +DNA NG LN + +++ +A++LG A +NP VQ +
Sbjct: 209 ALFDLEYYVHQMDNAQDLLSFGGLQVVING-LNSTEPLVKEYAAFVLGAAFSSNPKVQVE 267
Query: 200 VLELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 258
+E GAL KL+ ++ ++ A K L+ + SL+R+ Q+ F G +L+ ++
Sbjct: 268 AIEGGALQKLLVILATNQPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEK 327
Query: 259 SFEIRLHRKAVSLVGDLAKCQLENMH-KVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 317
S ++ L + V+L+ DL E M + E L +D K LQE+
Sbjct: 328 SAKV-LAVRVVTLLYDLVT---EKMFAEEEAELTQDSSPEKLQQYRQVQLLPGLQEQGWC 383
Query: 318 AIK-NLLQLRTTEAL--VLKDFCGL-DTALERLRQQLQ-EVMLEEDQRDY-AMDVEALRR 371
I LL L +A VL+ L T +R RQ LQ L Q +Y A+ L+
Sbjct: 384 EITAQLLALPEHDAREKVLQTLGALLTTCRDRYRQDLQLSRTLGRLQAEYQALASLELQE 443
Query: 372 EVELIFFRKLDDSGSNMIR 390
+ +FR+L S +++++
Sbjct: 444 GEDDGYFRELLASINSLMK 462
|
|
| CGD|CAL0000409 orf19.3649 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 62/223 (27%), Positives = 109/223 (48%)
Query: 118 KELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN--GQLN--H 173
K L + P +A L++ +I + ++ +SLED + AL+ +L+E +DNAN G L +
Sbjct: 28 KALNQLFGGPDEATLMKESIKVVESTDVSLEDKEIALENFEMLIENLDNANNIGNLKLWN 87
Query: 174 P--------DT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAV 222
P DT +++ + I+G A QNNP Q+ E LS+L+++ + E
Sbjct: 88 PLIDILAKEDTPVELKVLICGIIGTAVQNNPKSQEDFNETEGLSELIELAQDDKKFELQS 147
Query: 223 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 282
KAL +SS IR G F G ++ N+ +++R+ +SL+ + L++
Sbjct: 148 KALCAISSFIRYFQPGYAKFEKLQGLKLINFDNKNNKYQLRI----LSLISSILSNGLDD 203
Query: 283 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325
K + + +L SV L ++ L +K+L + L QL
Sbjct: 204 SLKAQFKEAKLPHYLASV--LNEDSNTSLVDKSLNIVSQLNQL 244
|
|
| RGD|735103 Sil1 "SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 62/197 (31%), Positives = 100/197 (50%)
Query: 94 KLKETAQDVQRLSP-SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQR 152
+L A Q P ELKK E EL L+T D Q++ I+ N+S+ SLE+
Sbjct: 154 ELARQATVKQLFRPIEELKK---EFDELNVVLET--DMQIMVRLINKFNSSSSSLEEKVA 208
Query: 153 ALQELLILVEPIDNA-------------NGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 199
AL +L V +DNA NG LN + +++ +A++LG A +NP VQ +
Sbjct: 209 ALFDLEYYVHQMDNAQDLLSFGGLQVVING-LNSTEPLVKEYAAFVLGAAFSSNPKVQVE 267
Query: 200 VLELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 258
+E GAL KL+ ++ + A K L+ + SL+R+ Q+ F G +L+ ++
Sbjct: 268 AIEGGALQKLLVILATEQPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEK 327
Query: 259 SFEIRLHRKAVSLVGDL 275
S ++ L + V+L+ DL
Sbjct: 328 SAKV-LAVRVVTLLYDL 343
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 390 | |||
| COG0216 | 363 | COG0216, PrfA, Protein chain release factor A [Tra | 0.002 |
| >gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 89 HSDPAKLKETAQDVQRLSP-----SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNS 143
SDP + ++ +++ L P E KK Q ++++ E L D ++ ++A +++
Sbjct: 29 ISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKEL 88
Query: 144 TLSLEDSQRALQELLILVEPIDNAN 168
+E+ + L+ LL+ +P D+ N
Sbjct: 89 EAKIEELEEELKILLLPKDPNDDKN 113
|
Length = 363 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 100.0 | |
| PF08609 | 92 | Fes1: Nucleotide exchange factor Fes1; InterPro: I | 99.81 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.75 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.7 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.61 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.5 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.45 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.42 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.33 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.25 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.03 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.99 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.99 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.97 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 98.91 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 98.76 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.53 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.51 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 98.45 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.36 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 98.32 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 98.24 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.1 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.07 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 98.06 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 98.05 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.04 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.01 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.0 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.93 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.86 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.79 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.68 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.67 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.6 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.59 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 97.56 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.4 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 97.31 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.27 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.25 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.19 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 97.12 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.11 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.08 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.06 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 96.93 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 96.85 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 96.8 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 96.79 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 96.7 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 96.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.66 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.52 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.48 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 96.47 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.4 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 96.33 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 96.25 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 96.24 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.22 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 96.2 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 96.16 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 96.12 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.03 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.96 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 95.96 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.91 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 95.91 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 95.88 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 95.85 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 95.82 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 95.8 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 95.79 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 95.74 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.71 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 95.59 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 95.38 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 95.37 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 95.36 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 95.34 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 95.26 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 95.14 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 95.06 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 95.01 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 94.82 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 94.77 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 94.7 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 94.68 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.63 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.59 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.54 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 94.24 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 94.1 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 93.95 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 93.93 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 93.82 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 93.44 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 93.33 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 93.29 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 93.21 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 93.13 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 93.0 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 92.99 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 92.98 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 92.89 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 92.87 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 92.46 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 92.26 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 92.24 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 91.87 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 91.83 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 91.58 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 91.56 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 91.43 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 91.26 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 91.24 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 91.23 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 91.15 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 90.98 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 90.97 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 90.26 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 90.18 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 90.13 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 90.01 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 90.01 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 89.91 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 89.87 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 89.84 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 89.84 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 89.7 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 89.51 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 89.48 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 89.32 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 89.3 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 89.23 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 88.77 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 88.54 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 88.14 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 87.95 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 87.91 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 87.83 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 87.69 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 87.53 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 86.79 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 86.49 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 86.41 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 86.41 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 86.26 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 85.88 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 85.46 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 85.42 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 85.41 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 85.27 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 84.87 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 84.19 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 83.66 | |
| PF14726 | 98 | RTTN_N: Rotatin, an armadillo repeat protein, cent | 83.14 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 82.26 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 82.17 | |
| KOG1087 | 470 | consensus Cytosolic sorting protein GGA2/TOM1 [Int | 82.04 | |
| PF06012 | 329 | DUF908: Domain of Unknown Function (DUF908); Inter | 81.16 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 81.03 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 80.92 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 80.79 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 80.6 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 80.36 |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=348.75 Aligned_cols=298 Identities=32% Similarity=0.443 Sum_probs=255.7
Q ss_pred CCChHHHHHhHhhcC--CCCCcccc--------ccccCCCCHHHHHHhHHHHHHHHHHcC---------CCChHHHHHH-
Q 016423 76 FSSIDGMLQWAIGHS--DPAKLKET--------AQDVQRLSPSELKKRQMEIKELMEKLK---------TPSDAQLIQI- 135 (390)
Q Consensus 76 ~~~~~gLLkwsi~~s--~~~~~~~~--------~~~~~~~s~e~l~~r~~~L~eal~~~~---------~~~d~~~Mk~- 135 (390)
+++|+|+++|++.++ .|+.+... ..... ++ +++++|+.++|...+ ++...+.|+.
T Consensus 11 ~~~~~gl~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~~ 85 (342)
T KOG2160|consen 11 PPNQEGLLEWSLQLSQSLGSRPDIQISGDLGMAEAKLK--DE---KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSMI 85 (342)
T ss_pred CccccchhhcccccccccCCCchhhhccchhhhhhhcc--Cc---ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHhh
Confidence 688999999999999 55443110 00111 12 248999999998764 1223345555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc
Q 016423 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203 (390)
Q Consensus 136 ~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~ 203 (390)
++.+++.+++++++|+.|||+|++|||+||||| .+|+++++.||+.|+|+|||++||||++|+.+++.
T Consensus 86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 677788899999999999999999999999999 67899999999999999999999999999999999
Q ss_pred CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc
Q 016423 204 GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 282 (390)
Q Consensus 204 g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~ 282 (390)
|++++|+.+|++++ ..+|.||+|||||+||||+|++.+|...+|+.+|+.++++++.++++++||+||+++|+.
T Consensus 166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~----- 240 (342)
T KOG2160|consen 166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ----- 240 (342)
T ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-----
Confidence 99999999999765 578999999999999999999999999999999999999977799999999999999996
Q ss_pred CCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHHhhhhhhhhhh
Q 016423 283 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDY 362 (390)
Q Consensus 283 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~el~~~e~~~ey 362 (390)
.+....+.+...++...+.++..+.+.++.|+++.++..++..-....+.+...++++..++.+.+.+...+..+++.+|
T Consensus 241 ~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l 320 (342)
T KOG2160|consen 241 EDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQL 320 (342)
T ss_pred hhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555557888999999999999999999999999999998765444446666788999999999999988777889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 016423 363 AMDVEALRREVELIFFRKLDD 383 (390)
Q Consensus 363 ~~dl~~lr~e~~~~~~~~~~~ 383 (390)
++++...+-|+..+|+++++.
T Consensus 321 ~~~l~~~~~e~~~~~~~~~~~ 341 (342)
T KOG2160|consen 321 VNSLWEICGEVPSILRKLLGS 341 (342)
T ss_pred HHHHHHHhcccHHHHHHHhcc
Confidence 999999999999999999874
|
|
| >PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-20 Score=150.37 Aligned_cols=87 Identities=33% Similarity=0.522 Sum_probs=70.2
Q ss_pred CChHHHHHhHhhcCCCCCccccccccCCCCHHHHHHhHHHHHHHHHHc-CCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 016423 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQ 155 (390)
Q Consensus 77 ~~~~gLLkwsi~~s~~~~~~~~~~~~~~~s~e~l~~r~~~L~eal~~~-~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd 155 (390)
++|+|||||||+||.++...+.+ ...++.+ +|++|..++|+.+ ++|+|+++||+++++|.+++.++|+|+.|||
T Consensus 3 ~~l~~LLkWsI~ns~~~~~~~~~-~~~~~~~----~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald 77 (92)
T PF08609_consen 3 PNLNGLLKWSIENSTTSASDAPP-SAEQPDE----ERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALD 77 (92)
T ss_pred HHHHHHHHHHHHcCCCCcccccc-CcCCchh----hhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 57999999999999544321111 1122222 2677788887776 5999999999999999999999999999999
Q ss_pred HHHHhhccccccc
Q 016423 156 ELLILVEPIDNAN 168 (390)
Q Consensus 156 ~Le~lve~IDnAn 168 (390)
+|++|||+|||||
T Consensus 78 ~le~LVE~IDNAN 90 (92)
T PF08609_consen 78 NLEELVENIDNAN 90 (92)
T ss_pred HHHHHHHcccccc
Confidence 9999999999998
|
Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity []. |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=171.47 Aligned_cols=170 Identities=22% Similarity=0.264 Sum_probs=147.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+|.|+++.|+++|.|+||+++...|.+++.++++|++++|+.++..... ...+.++|+||++|||..|....-.....
T Consensus 159 ~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~i 238 (514)
T KOG0166|consen 159 QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPI 238 (514)
T ss_pred HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 78899999999999999999999999999999999999999999987764 67899999999999997444443345688
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
++.|..++++. |..+...|||+|+||+ ++.++....+++.|+|+.|+++|.+++..++..||++++++++...
T Consensus 239 Lp~L~~ll~~~--D~~Vl~Da~WAlsyLs-----dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 239 LPALLRLLHST--DEEVLTDACWALSYLT-----DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD 311 (514)
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHHh-----cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence 99999999987 7889999999999999 4678889999999999999999999999999999999999998776
Q ss_pred hHHHHHHhhCCcHHHHHHH
Q 016423 328 TEALVLKDFCGLDTALERL 346 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~L 346 (390)
...+.+. .+|+-+.|..|
T Consensus 312 ~QTq~vi-~~~~L~~l~~l 329 (514)
T KOG0166|consen 312 EQTQVVI-NSGALPVLSNL 329 (514)
T ss_pred HHHHHHH-hcChHHHHHHH
Confidence 6666666 56654444333
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-17 Score=159.21 Aligned_cols=170 Identities=20% Similarity=0.260 Sum_probs=144.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH--HHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV--EEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~--~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
++|.+++.+||.+|.|+||+++...+.+++.++++|++.+|+.++.++.. .+.+.+.|.||+|||+..|....-....
T Consensus 164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq 243 (526)
T COG5064 164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ 243 (526)
T ss_pred HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH
Confidence 78899999999999999999999999999999999999999999987654 6678999999999999544434434466
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+++|..++.+- |+.+...|+|+|+||. ++..+-...+++.|+.+.|+++|.+++..++..|++.++++++..
T Consensus 244 alpiL~KLiys~--D~evlvDA~WAiSYls-----Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 244 ALPILAKLIYSR--DPEVLVDACWAISYLS-----DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS 316 (526)
T ss_pred HHHHHHHHHhhc--CHHHHHHHHHHHHHhc-----cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence 799999999986 7778999999999998 355566788999999999999999999999999999999999866
Q ss_pred hhHHHHHHhhCCcHHHHHHH
Q 016423 327 TTEALVLKDFCGLDTALERL 346 (390)
Q Consensus 327 ~~~r~~~~~~~gL~~~L~~L 346 (390)
....+.+. .||..+.+..|
T Consensus 317 D~QTqviI-~~G~L~a~~~l 335 (526)
T COG5064 317 DDQTQVII-NCGALKAFRSL 335 (526)
T ss_pred ccceehhe-ecccHHHHHHH
Confidence 44444444 88875554444
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-14 Score=147.57 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=142.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+|.++++.++..|..+||+++..+....+.++..|++|.|..+++... ...+..|.|+||+++.+++.-.++++.+|-
T Consensus 286 ~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l 365 (514)
T KOG0166|consen 286 DLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANL 365 (514)
T ss_pred HHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHccc
Confidence 7889999999999999999999999999999999999999999999554 457888999999999999999999999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
++.|+.+|++. +.++|..|+|+|+++++ .+.++....+++.|++++++.+|...|.++...+|.++.+|...++
T Consensus 366 ~p~Li~~l~~~--ef~~rKEAawaIsN~ts----~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 366 IPVLINLLQTA--EFDIRKEAAWAISNLTS----SGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHHHHHHHhcc--chHHHHHHHHHHHhhcc----cCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999986 78999999999999997 4678889999999999999999999999999999999999998764
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=152.32 Aligned_cols=199 Identities=18% Similarity=0.132 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHhhccccccc-----ccCCCCChHHHHHHHHHHHHHhhC---ChHHHHHHHhcCcHHHHHHhhcCCCH
Q 016423 147 LEDSQRALQELLILVEPIDNAN-----GQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSFV 218 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~IDnAn-----~lL~s~~~~vR~~Aa~vLgta~QN---Np~~Q~~~le~g~l~~Ll~LL~s~~~ 218 (390)
.+-+..|+..|..++..-|+.. .+|.++++.++..+..+||++++. +...++.....|++|.|++|+.+.+.
T Consensus 544 ~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~ 623 (2102)
T PLN03200 544 PKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKE 623 (2102)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCH
Confidence 3445555555555555544443 567788888888888888887663 22233444467999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchH
Q 016423 219 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 298 (390)
Q Consensus 219 ~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~ 298 (390)
..+..|.|+|++++.+++.....+...||+++|+.+|++. +.++++.++|.|.+|+. ......+..+++.|+++
T Consensus 624 ~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~--~~~v~keAA~AL~nL~~----~~~~~q~~~~v~~GaV~ 697 (2102)
T PLN03200 624 ETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN--TEAVATQSARALAALSR----SIKENRKVSYAAEDAIK 697 (2102)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHh----CCCHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999986 56689999999999995 23445556778999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHH
Q 016423 299 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE 352 (390)
Q Consensus 299 ~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~e 352 (390)
.|+++|++.|.++.+.|+.+|.+|++++ +.+..+...+++.++++.||+...+
T Consensus 698 pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~ 750 (2102)
T PLN03200 698 PLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLE 750 (2102)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChH
Confidence 9999999999999999999999999987 4566677688899999999876553
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=148.89 Aligned_cols=183 Identities=11% Similarity=0.047 Sum_probs=150.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc
Q 016423 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203 (390)
Q Consensus 136 ~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~ 203 (390)
.++.++.+...+ .+..+.+.|..++-++.+.. .+|.+.+.++|..++|+|..++.+++..++.+.+.
T Consensus 367 LV~Llr~k~p~~-vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ 445 (2102)
T PLN03200 367 LVKLLKPRDTKL-VQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGR 445 (2102)
T ss_pred HHHHhCCCCCch-hHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 344444443222 23444555555454543322 68889999999999999999999999999999999
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 204 g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
|++|.|+++|.+++...+..|+++|+++..+++.....+.++||++.|+++|.++ +.++|..|+|.|++|+. .
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~NLa~-----~ 518 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG--SQKAKEDSATVLWNLCC-----H 518 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhC-----C
Confidence 9999999999998888999999999999999998888999999999999999986 67899999999999994 2
Q ss_pred CCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+..+..+.+.|+++.|+++|.+.+...++.|+.+|.+|+..+
T Consensus 519 ~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~ 561 (2102)
T PLN03200 519 SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA 561 (2102)
T ss_pred cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Confidence 3334455668899999999999999999999999999997654
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-13 Score=131.32 Aligned_cols=199 Identities=18% Similarity=0.158 Sum_probs=165.4
Q ss_pred ChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhhccccc-------cc------ccCCCCChHHHHHHHHHHHHHhhC
Q 016423 128 SDAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEPIDN-------AN------GQLNHPDTDIRKISAWILGKASQN 192 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~--~~~s~e~~~~aLd~Le~lve~IDn-------An------~lL~s~~~~vR~~Aa~vLgta~QN 192 (390)
.|...|.+++.+|.. .+.++|-...|.=.+.||.+--.. ++ .+|.|++..|+.-|...+|+++-.
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 344455555555543 223456666666667776653211 11 688999999999999999999999
Q ss_pred ChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHH
Q 016423 193 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 272 (390)
Q Consensus 193 Np~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LL 272 (390)
+....+.++.+|+++.+..+|++....+|..|.|.||+++-++....+++++.+-+++|+++|.+- +.++|..|||++
T Consensus 316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a--e~k~kKEACWAi 393 (526)
T COG5064 316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA--EYKIKKEACWAI 393 (526)
T ss_pred CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH--HHHHHHHHHHHH
Confidence 988888899999999999999998888999999999999999999999999999999999999985 899999999999
Q ss_pred HHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHH
Q 016423 273 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 330 (390)
Q Consensus 273 s~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r 330 (390)
++..+.. ...|+....++++|+++.|.++|...|..+.+-+|.|+.+++..++..+
T Consensus 394 sNatsgg--~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~ 449 (526)
T COG5064 394 SNATSGG--LNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDR 449 (526)
T ss_pred Hhhhccc--cCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHH
Confidence 9998732 2467888999999999999999999998999999999999999875443
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=100.96 Aligned_cols=118 Identities=21% Similarity=0.225 Sum_probs=107.6
Q ss_pred HHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhh
Q 016423 199 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 278 (390)
Q Consensus 199 ~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~ 278 (390)
.+.+.|+++.|++++.+.+..++..++++|++++.+.+.....+...|+++.|..+|.++ +.+++..++++|++|+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~- 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAA- 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHcc-
Confidence 467889999999999988888999999999999999999999999999999999999986 67899999999999994
Q ss_pred hhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 279 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 279 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
..+.....+.+.|+++.+++++..++..+++.++.+|.+|.
T Consensus 79 ----~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 ----GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ----CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 34456677888999999999999999999999999999886
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.7e-11 Score=97.21 Aligned_cols=105 Identities=24% Similarity=0.347 Sum_probs=97.4
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+|.++++.+|..|+++|++++.++|.....+++.|++|.|++++.+++..++..|+++|++++.+.+.....+...|+++
T Consensus 15 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 94 (120)
T cd00020 15 LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVP 94 (120)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChH
Confidence 45667789999999999999999999999999999999999999998889999999999999999888888888899999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHh
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
.|.+++.++ +.+++..++++|.+|+
T Consensus 95 ~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 95 KLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 999999986 6789999999999987
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-08 Score=105.11 Aligned_cols=191 Identities=16% Similarity=0.187 Sum_probs=154.8
Q ss_pred CHHHHHHHHHHHHHhhccccccc----------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC
Q 016423 146 SLEDSQRALQELLILVEPIDNAN----------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 215 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnAn----------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s 215 (390)
+.|+...+.+.|..+.+..+-.. ..|.|+++.||..+++.|+.++.++....+.+.+.+.++.++.++.+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~ 130 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD 130 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC
Confidence 44555555566666666543322 67899999999999999999999999888889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcC
Q 016423 216 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 295 (390)
Q Consensus 216 ~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g 295 (390)
++.++...|+-+|+.+.++ +++.+.++..++...|..++..+ +.-+|.++..++.+++. ..++..+.+.+.|
T Consensus 131 ~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~-----~S~~~~~~~~~sg 202 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIAS-----HSPEAAEAVVNSG 202 (503)
T ss_pred CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHh-----cCHHHHHHHHhcc
Confidence 9999999999999999986 56667777888899999999874 23468889999999985 5677788889999
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHH
Q 016423 296 FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERL 346 (390)
Q Consensus 296 ~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~L 346 (390)
+++.++..|.++|.-++..++.+|..|+.. +...+-+. ..|+ +.....+
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~~yL~-~~gi~~~L~~~l 252 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAET-PHGLQYLE-QQGIFDKLSNLL 252 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHHHHHH-hCCHHHHHHHHH
Confidence 999999999999999999999999999984 44555555 4454 4444433
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=108.33 Aligned_cols=170 Identities=12% Similarity=0.152 Sum_probs=145.4
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
..++.++|..|..||.+++-- ...+..+...|++.+|.+|-++.+..++..|+.||++++.. ..+.+.++..||+++|
T Consensus 136 mtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvL 213 (550)
T KOG4224|consen 136 MTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVL 213 (550)
T ss_pred cCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhh
Confidence 367888999898888888776 45777888899999999988888889999999999999644 5667788899999999
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcC--chHHHHHhhcCCChhHHHHHHHHHHHHHhcChhH
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF--FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE 329 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g--~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~ 329 (390)
+.++.+. +..+|-.++..|+++.. +...++.+.+.+ +++.|++++..++..++-.|..||.+|+.+....
T Consensus 214 Vsll~s~--d~dvqyycttaisnIaV------d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 214 VSLLKSG--DLDVQYYCTTAISNIAV------DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred hhhhccC--ChhHHHHHHHHhhhhhh------hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 9999987 56689999999999984 556677888888 9999999999999999999999999999987777
Q ss_pred HHHHHhhCCcHHHHHHHHHHHHH
Q 016423 330 ALVLKDFCGLDTALERLRQQLQE 352 (390)
Q Consensus 330 r~~~~~~~gL~~~L~~Lr~~l~e 352 (390)
+...+ .+++...++.|++.+-.
T Consensus 286 ~eiv~-ag~lP~lv~Llqs~~~p 307 (550)
T KOG4224|consen 286 REIVE-AGSLPLLVELLQSPMGP 307 (550)
T ss_pred hHHHh-cCCchHHHHHHhCcchh
Confidence 66554 89999899988765443
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=100.55 Aligned_cols=169 Identities=16% Similarity=0.201 Sum_probs=140.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcC--cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g--~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.+|++.+.++|..++.+|++++=. ...+..+.+.+ .+|.|++|..+.++.++-.|-.||.++.-+..+ +..+.++|
T Consensus 215 sll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y-q~eiv~ag 292 (550)
T KOG4224|consen 215 SLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY-QREIVEAG 292 (550)
T ss_pred hhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh-hhHHHhcC
Confidence 678999999999999999999655 55778888887 899999999999999999999999998766544 56778999
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCC-hhHHHHHHHHHHHHHhc
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD-LDLQEKALAAIKNLLQL 325 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d-~~v~EkAL~aL~~L~~~ 325 (390)
|++.++++|+++ ..++....++.|.++.- +|-..-.+.+.||++.||.+|.-.| .+++-+|..+|++|+..
T Consensus 293 ~lP~lv~Llqs~--~~plilasVaCIrnisi------hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 293 SLPLLVELLQSP--MGPLILASVACIRNISI------HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred CchHHHHHHhCc--chhHHHHHHHHHhhccc------ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 999999999987 56688899999999983 5555566789999999999998875 45999999999999986
Q ss_pred ChhHHHHHHhhCCcHHHHHHHH
Q 016423 326 RTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 326 ~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
.+..+.+++..+.+....+.++
T Consensus 365 se~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 365 SEHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred hhhhhHHHhhcCchHHHHHHHh
Confidence 6566777875666655555443
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-08 Score=99.20 Aligned_cols=152 Identities=20% Similarity=0.136 Sum_probs=125.9
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
+.+.+=+..|..-|--.+-+ -..-..++..|++.+|+..+++++.++|.+|.+.|+..++|||+.|.++.+.||++.|.
T Consensus 94 s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 45566677888888888776 34556689999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcC--CChhHHHHHHHHHHHHHhcChhHH
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIKNLLQLRTTEA 330 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~~v~EkAL~aL~~L~~~~~~~r 330 (390)
.+|.++ .+...|+||+++|++|+. .++.....|...+-...|...+.+ .+..++-||+..+..|++......
T Consensus 173 ~~ls~~-~~~~~r~kaL~AissLIR-----n~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 173 KILSSD-DPNTVRTKALFAISSLIR-----NNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred HHHccC-CCchHHHHHHHHHHHHHh-----cCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence 999966 366789999999999996 344444455554448899999988 578899999999999997543333
Q ss_pred H
Q 016423 331 L 331 (390)
Q Consensus 331 ~ 331 (390)
.
T Consensus 247 d 247 (342)
T KOG2160|consen 247 D 247 (342)
T ss_pred h
Confidence 3
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-08 Score=93.93 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=122.7
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
.+.+|.++..|..++|+. ...|..|+.+.+.|+++.+..+++++++.++.+|++|+.++.-+ .+++.... .-+-.++
T Consensus 23 ~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~~Ik-~~i~~Vc 99 (254)
T PF04826_consen 23 STEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQEQIK-MYIPQVC 99 (254)
T ss_pred cCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHHHHH-HHHHHHH
Confidence 357899999999999998 45689999999999999999999999999999999999998655 44445443 3344555
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHH
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 331 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~ 331 (390)
..++..+ .+..+|..++.+|.+|+. ..+....+. +.++.++.+|.+.+..++..++.+|.+|++.....+.
T Consensus 100 ~~~~s~~-lns~~Q~agLrlL~nLtv------~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~ 170 (254)
T PF04826_consen 100 EETVSSP-LNSEVQLAGLRLLTNLTV------TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRE 170 (254)
T ss_pred HHHhcCC-CCCHHHHHHHHHHHccCC------CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHH
Confidence 5555544 356689999999999974 333344443 4788999999999999999999999999987544555
Q ss_pred HHHhhCCcHHHHH
Q 016423 332 VLKDFCGLDTALE 344 (390)
Q Consensus 332 ~~~~~~gL~~~L~ 344 (390)
.+. ...+...+.
T Consensus 171 Ll~-~q~~~~~~~ 182 (254)
T PF04826_consen 171 LLS-AQVLSSFLS 182 (254)
T ss_pred HHh-ccchhHHHH
Confidence 443 444444443
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.6e-08 Score=102.73 Aligned_cols=190 Identities=15% Similarity=0.174 Sum_probs=147.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc--chHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--GQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~--a~~~f~~~g 246 (390)
.+|.+.++.++..|+.-|..+|-.+.+++..+.+.|+|++|+.+|.+.+.+|+..|.+|+-||+-+... +.-++.+.|
T Consensus 240 ~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~ 319 (717)
T KOG1048|consen 240 SMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELN 319 (717)
T ss_pred HHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcC
Confidence 678899999999999999999999999999999999999999999999999999999999999998766 788889999
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc--------------CCChhHH
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------------SADLDLQ 312 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~--------------~~d~~v~ 312 (390)
|+..++++|.... |..++..+..++++|.+ .+..+..++. ..+..|..-+- ..+.++.
T Consensus 320 Gv~~l~~~Lr~t~-D~ev~e~iTg~LWNLSS------~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 320 GVPTLVRLLRHTQ-DDEVRELITGILWNLSS------NDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred ChHHHHHHHHhhc-chHHHHHHHHHHhcccc------hhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 9999999999642 55689999999999985 3334443333 33333333221 1146788
Q ss_pred HHHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 016423 313 EKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVMLEEDQRDYAMDV 366 (390)
Q Consensus 313 EkAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l~el~~~e~~~ey~~dl 366 (390)
-.+..||.++...+...|+.++.-.|| +.++-.++.-+..-.-+....|-|.-+
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCi 446 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCI 446 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 999999999999888999999955554 666665554444332233444444443
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=92.76 Aligned_cols=151 Identities=14% Similarity=0.137 Sum_probs=121.1
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
-..+...+.+||-++-.++-.=...+.-+-...++.+|++++..+...+...++.||.|++-.|.+-+..|...||+..|
T Consensus 387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 45677888888888887755433333333333678999999977767788999999999999999999999999999999
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChh
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 328 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~ 328 (390)
...+.++ +..+|.+++|.|+++.. +.++..+..+...-....++.+.+.+|..+||.++..|.+|++...+
T Consensus 467 ~s~~~~~--~~n~r~~~~~~Lr~l~f----~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 467 ESMLTDP--DFNSRANSLWVLRHLMF----NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHhcCC--CchHHHHHHHHHHHHHh----cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 9999987 67789999999999996 34445555555555566677788888999999999999999996433
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=85.84 Aligned_cols=189 Identities=23% Similarity=0.310 Sum_probs=134.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC----HHHHHHHHHHHHHHhhCCccchHHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~----~~vr~kAL~ALSsLiR~~~~a~~~f~~ 244 (390)
++|.+++.-++..|+.+++.+....+....... .+.++.++..+.+.. .++..-|+.+++.++|. +.....|.+
T Consensus 112 ~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~ 189 (312)
T PF03224_consen 112 KLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWK 189 (312)
T ss_dssp HH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHh
Confidence 577889999999999999999888776555433 456788888887632 34568899999999977 666788889
Q ss_pred cCcHHHHHHHh-----cCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHH
Q 016423 245 EAGDLMLQDIL-----GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAA 318 (390)
Q Consensus 245 ~gGl~~L~~lL-----~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~a 318 (390)
.||++.|..+| .+++.+..++=.++++++-|.. +++..+.+...++++.++++++.. ...+..-++.+
T Consensus 190 ~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF------~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~ 263 (312)
T PF03224_consen 190 SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF------EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAI 263 (312)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc------CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHH
Confidence 99999999999 3444688899999999998874 566677788889999999999775 56777778889
Q ss_pred HHHHHhcChh-HHHHHHhhCCcHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 016423 319 IKNLLQLRTT-EALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRRE 372 (390)
Q Consensus 319 L~~L~~~~~~-~r~~~~~~~gL~~~L~~Lr~~l~el~~~e~~~ey~~dl~~lr~e 372 (390)
+.+|+...+. +...+- .|++.++++.|...- ..|| |-.+|++.|.+.
T Consensus 264 l~Nl~~~~~~~~~~~mv-~~~~l~~l~~L~~rk---~~De---dl~edl~~L~e~ 311 (312)
T PF03224_consen 264 LRNLLSKAPKSNIELMV-LCGLLKTLQNLSERK---WSDE---DLTEDLEFLKEI 311 (312)
T ss_dssp HHHTTSSSSTTHHHHHH-HH-HHHHHHHHHSS-----SSH---HHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHH-HccHHHHHHHHhcCC---CCCH---HHHHHHHHHHhh
Confidence 9999987653 455555 788877777764431 1233 444566555543
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.9e-06 Score=89.93 Aligned_cols=165 Identities=16% Similarity=0.160 Sum_probs=134.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
++|.+.+.++...+..+|..++-. +.++..+.+.|++|+|++++.+++..+...++.+|-||.-+ +.....++..|.+
T Consensus 297 ~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlI 374 (708)
T PF05804_consen 297 KCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLI 374 (708)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCc
Confidence 677899999999999999999655 55899999999999999999998888888899999998644 6668899999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcC-CChhHHHHHHHHHHHHHhcCh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+.|+.+|.++ + .+.-++.+|++|+. +++.+..|...++++.++.++-. ++..+...++.++.+|+....
T Consensus 375 PkLv~LL~d~--~--~~~val~iLy~LS~------dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 375 PKLVELLKDP--N--FREVALKILYNLSM------DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHHHHHhCCC--c--hHHHHHHHHHHhcc------CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 9999999875 2 45568899999984 66778889999999999997655 466666667778888888764
Q ss_pred hHHHHHHhhCCcHHHHHHH
Q 016423 328 TEALVLKDFCGLDTALERL 346 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~L 346 (390)
+.+.+...+||..++++.
T Consensus 445 -naqlm~~g~gL~~L~~ra 462 (708)
T PF05804_consen 445 -NAQLMCEGNGLQSLMKRA 462 (708)
T ss_pred -HHHHHHhcCcHHHHHHHH
Confidence 556777667777666543
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-05 Score=77.92 Aligned_cols=174 Identities=11% Similarity=0.086 Sum_probs=129.6
Q ss_pred HHHHHHHhhccccccc------ccCCC-CChHHH---HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc--CCCHHH
Q 016423 153 ALQELLILVEPIDNAN------GQLNH-PDTDIR---KISAWILGKASQNNPLVQKQVLELGALSKLMKMVK--SSFVEE 220 (390)
Q Consensus 153 aLd~Le~lve~IDnAn------~lL~s-~~~~vR---~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~--s~~~~v 220 (390)
+|-.=.++|..|+.++ .++.+ .+.++| ..+++.|..++.|. .++..+.+.|+++.++.++. ++++.|
T Consensus 268 ~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~~~h~~~p~V 346 (461)
T KOG4199|consen 268 ALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLALRHSDDPLV 346 (461)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHHHHcCCChHH
Confidence 3444457777888877 45543 455566 56777788887664 59999999999999999974 345667
Q ss_pred HHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHH
Q 016423 221 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 300 (390)
Q Consensus 221 r~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~L 300 (390)
-..++.+||-|+--.|.....|++.||-.+.++.++.......+|+++|++|.|++. ...+.+..++..|+ ..|
T Consensus 347 i~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~-----rs~~~~~~~l~~Gi-E~L 420 (461)
T KOG4199|consen 347 IQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV-----RSAENRTILLANGI-EKL 420 (461)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-----hhhhccchHHhccH-HHH
Confidence 788888999998888999999999999999999998654466799999999999996 34566777777775 445
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 301 VDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 301 v~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
+..-...+.++...+-.||.-|-++. .-|..|.
T Consensus 421 i~~A~~~h~tce~~akaALRDLGc~v-~lre~wt 453 (461)
T KOG4199|consen 421 IRTAKANHETCEAAAKAALRDLGCDV-YLREEWT 453 (461)
T ss_pred HHHHHhcCccHHHHHHHHHHhcCcch-hhHHHhc
Confidence 55556666677777777777776654 3455554
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-05 Score=82.50 Aligned_cols=201 Identities=18% Similarity=0.165 Sum_probs=150.2
Q ss_pred HHHHHHHHHHcCCCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-------------ccCCCCChHHH
Q 016423 114 QMEIKELMEKLKTPS-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-------------GQLNHPDTDIR 179 (390)
Q Consensus 114 ~~~L~eal~~~~~~~-d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-------------~lL~s~~~~vR 179 (390)
.+-|+..++...+.+ ..+.+.....-|..+ ++.-|.-++..+..+++.-+.+- .+|.+++..|.
T Consensus 59 ~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va 136 (503)
T PF10508_consen 59 CDILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVA 136 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHH
Confidence 345555555443322 233343444444443 34556666777777766654422 68899999999
Q ss_pred HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCC
Q 016423 180 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 259 (390)
Q Consensus 180 ~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~ 259 (390)
..|+.+|..++.+.+..+ .++..+.++.|..++...+..+|.+++..+..+.++.+.........|.++.+...|.++
T Consensus 137 ~~A~~~L~~l~~~~~~~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d- 214 (503)
T PF10508_consen 137 KAAIKALKKLASHPEGLE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD- 214 (503)
T ss_pred HHHHHHHHHHhCCchhHH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-
Confidence 999999999998766554 577888899999999887778899999999999999999999988889999999999985
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChh------HHHHHHHHHHHHHhc
Q 016423 260 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD------LQEKALAAIKNLLQL 325 (390)
Q Consensus 260 ~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~------v~EkAL~aL~~L~~~ 325 (390)
|+-+|..++-+|+.|+. .+...+.+.+.|+++.|+.++...+.+ +.--.+...++++..
T Consensus 215 -DiLvqlnalell~~La~------~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 215 -DILVQLNALELLSELAE------TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred -cHHHHHHHHHHHHHHHc------ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 88899999999999994 566688899999999999999765222 223333555566653
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-05 Score=86.26 Aligned_cols=142 Identities=16% Similarity=0.138 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCC
Q 016423 180 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 259 (390)
Q Consensus 180 ~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~ 259 (390)
..|..+|.+++ .|+.+...+.+.|+++.|+++|++++.++..-++..|..|.- +..+.....+.|.++.|..++.++
T Consensus 267 rv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~- 343 (708)
T PF05804_consen 267 RVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSE- 343 (708)
T ss_pred HHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCC-
Confidence 35677899994 557899999999999999999999988888888888887753 456788888999999999999987
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 260 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 260 ~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
+..++..|+.+|.+|+. +++.+..+++.|+++.|+.+|..+ +.+..++.+|.+|.... .++..+.
T Consensus 344 -~~~l~~~aLrlL~NLSf------d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~ 408 (708)
T PF05804_consen 344 -NEDLVNVALRLLFNLSF------DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFA 408 (708)
T ss_pred -CHHHHHHHHHHHHHhCc------CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHh
Confidence 46689999999999984 788899999999999999999865 46677999999988753 5777776
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.8e-05 Score=77.10 Aligned_cols=170 Identities=12% Similarity=0.089 Sum_probs=139.0
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH-HHH---HHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEA---VKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~-~vr---~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
-+|++-..++-.|++++=+|..||. +.+.||+..|+.++.+.+. .+| ..++.-|+.|. ++.......++.||.+
T Consensus 254 ~dp~~L~~l~~tl~~lAVr~E~C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~ 331 (461)
T KOG4199|consen 254 IDPDSLVSLSTTLKALAVRDEICKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLD 331 (461)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChH
Confidence 3488889999999999999998887 7789999999999998653 344 45676777665 5567788999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHhcCh
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~~~~ 327 (390)
.|+.++....+++.+...++..|+-|+- -.|+.-..+++.|.-...++.++.. ...+|..+..++.+++..+.
T Consensus 332 ~ii~l~~~h~~~p~Vi~~~~a~i~~l~L-----R~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 332 KIITLALRHSDDPLVIQEVMAIISILCL-----RSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHh-----cCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999986555678889999999999984 4677778889999999999999664 67999999999999999877
Q ss_pred hHHHHHHhhCCcHHHHHHHHHHHH
Q 016423 328 TEALVLKDFCGLDTALERLRQQLQ 351 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~Lr~~l~ 351 (390)
..+..+- ..|.+.++..=+..++
T Consensus 407 ~~~~~~l-~~GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 407 ENRTILL-ANGIEKLIRTAKANHE 429 (461)
T ss_pred hccchHH-hccHHHHHHHHHhcCc
Confidence 7777776 7888888776655544
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=77.74 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 253 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~ 253 (390)
.+.+...|..+|--++..+|.+|..|....++..|+.+|.. .+..++..++.++.+++.++|+++..|...+|+..+..
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 44467789999999999999999999999999999999954 34678999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHHHHh
Q 016423 254 ILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 254 lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
++++.+.+..+|.|.+-+|+-.+
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHH
Confidence 99988788889888875555444
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.5e-06 Score=56.66 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=38.4
Q ss_pred ChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016423 193 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 233 (390)
Q Consensus 193 Np~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR 233 (390)
||..++.+++.|++|+|+++|++.+..++..|+|||++|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57888999999999999999999999999999999999975
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00062 Score=70.44 Aligned_cols=195 Identities=19% Similarity=0.169 Sum_probs=130.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+|++++.-|...|+.+++.+++-.+.........-.++-|...+++. +...+.-++.+++.|+|..+. ...|.+.+|
T Consensus 108 ~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~-R~~f~~~~~ 186 (429)
T cd00256 108 NLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEY-RFAFVLADG 186 (429)
T ss_pred HHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchH-HHHHHHccC
Confidence 677888888999999999999876553222111111334455566543 344566778899999998444 578888999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhcC
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~~ 326 (390)
++.|..+|+....+..++=++++++.-|.. +++..+.+...++++.++++++.. -..+..-++.++.+|+..+
T Consensus 187 v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF------~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 187 VPTLVKLLSNATLGFQLQYQSIFCIWLLTF------NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHhc------cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 999999998654467889999999998874 333455667789999999999875 4566666777888888742
Q ss_pred ------hhHHHHHHhhCCcHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 016423 327 ------TTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIF 377 (390)
Q Consensus 327 ------~~~r~~~~~~~gL~~~L~~Lr~~l~el~~~e~~~ey~~dl~~lr~e~~~~~ 377 (390)
..+...+- .||+.+.+..|..+- ..|+ |-.+||..|.+.++..+
T Consensus 261 ~~~~~~~~~~~~mv-~~~l~~~l~~L~~rk---~~De---dL~edl~~L~e~L~~~~ 310 (429)
T cd00256 261 VDREVKKTAALQMV-QCKVLKTLQSLEQRK---YDDE---DLTDDLKFLTEELKNSV 310 (429)
T ss_pred cccchhhhHHHHHH-HcChHHHHHHHhcCC---CCcH---HHHHHHHHHHHHHHHHH
Confidence 12333444 577767666553320 0122 34455655665555543
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00023 Score=68.86 Aligned_cols=190 Identities=17% Similarity=0.138 Sum_probs=134.5
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHH
Q 016423 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLV 196 (390)
Q Consensus 117 L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~ 196 (390)
+++.+..+....|+-.-..++-.+.+....+..+...-+ +..|.--..+|+++++.+|..|.+++.+++.+ .+.
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-----~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en 87 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-----LGGISLIGSLLNDPNPSVREKALNALNNLSVN-DEN 87 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-----cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhh
Confidence 455555554445566555555555554433333221000 00011111578899999999999999999655 557
Q ss_pred HHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 016423 197 QKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 274 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s~--~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~ 274 (390)
|..+-. .++.+++...+. +.+++..++.+|.+|...+.. +..+ .+.++.+..+|.+. +.++|..++.+|.+
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l--~~~i~~ll~LL~~G--~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHML--ANYIPDLLSLLSSG--SEKTKVQVLKVLVN 160 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhH--HhhHHHHHHHHHcC--ChHHHHHHHHHHHH
Confidence 776543 588888876654 357899999999999765333 3333 46899999999986 67789999999999
Q ss_pred HhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhc
Q 016423 275 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 275 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~ 325 (390)
|+. +++....++...++..++.++... +.++...++..+.+|...
T Consensus 161 LS~------np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 161 LSE------NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred hcc------CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 984 788888888899999999999886 778899999999998653
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.2e-06 Score=60.07 Aligned_cols=55 Identities=20% Similarity=0.394 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 231 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsL 231 (390)
+.||..|+|+||++++..+.....+. ..++|.|+.+|.++++.||.+|.|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47999999999999999888777644 45799999999988889999999999975
|
... |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=78.97 Aligned_cols=227 Identities=16% Similarity=0.163 Sum_probs=165.6
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-----------------ccCCC-CChHHHHHHHHHHHH
Q 016423 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-----------------GQLNH-PDTDIRKISAWILGK 188 (390)
Q Consensus 127 ~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-----------------~lL~s-~~~~vR~~Aa~vLgt 188 (390)
.++.-.||+.++=+.+.+ ++-. .|+.|.++||.+-..| .+|++ .+.+|.-.||.+|..
T Consensus 163 ~sasSk~kkLL~gL~~~~-Des~---Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRalty 238 (1051)
T KOG0168|consen 163 SSASSKAKKLLQGLQAES-DESQ---QLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTY 238 (1051)
T ss_pred ccchHHHHHHHHhccccC-ChHH---HHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 344558999988888764 3333 4566777788777766 67776 457899999999999
Q ss_pred HhhCChHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHH
Q 016423 189 ASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 267 (390)
Q Consensus 189 a~QNNp~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~K 267 (390)
++---|.+-..++++++||.|+.-|-. +-..|.+.+|.||--|-|.||. +...+||+...+..|.== .+-.||+
T Consensus 239 l~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFF--Si~aQR~ 313 (1051)
T KOG0168|consen 239 LCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFF--SIHAQRV 313 (1051)
T ss_pred HHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHH--HHHHHHH
Confidence 999999999999999999999876653 4468999999999999999987 456789998888777532 4568999
Q ss_pred HHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHH
Q 016423 268 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 268 A~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
|+....|.|.. ..++....+. ..+|.|..+|+..|....|.++-|+..++......++.+.+-|.. .+++...
T Consensus 314 AlaiaaN~Cks----i~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~ 386 (1051)
T KOG0168|consen 314 ALAIAANCCKS----IRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQ 386 (1051)
T ss_pred HHHHHHHHHhc----CCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHH
Confidence 99999999973 3555555553 579999999999999999999999999987543344445444442 1222222
Q ss_pred HHHHHhhh-hhhhhhhHHHHHHHH
Q 016423 348 QQLQEVML-EEDQRDYAMDVEALR 370 (390)
Q Consensus 348 ~~l~el~~-~e~~~ey~~dl~~lr 370 (390)
+-+. ... --....|+..|--+.
T Consensus 387 qLls-vt~t~Ls~~~~~~vIrmls 409 (1051)
T KOG0168|consen 387 QLLS-VTPTILSNGTYTGVIRMLS 409 (1051)
T ss_pred HHHh-cCcccccccchhHHHHHHH
Confidence 1111 111 224677877764444
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.01 E-value=7e-05 Score=70.05 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=108.5
Q ss_pred hcCCCCHHHHHHHHHHHHHhhccc---cccc--------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc
Q 016423 141 NNSTLSLEDSQRALQELLILVEPI---DNAN--------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203 (390)
Q Consensus 141 ~~~~~s~e~~~~aLd~Le~lve~I---DnAn--------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~ 203 (390)
.+++.+=+.+..+|+.|+.++..- +... ..+++....|-..||.+|+.++..-...-+.+. .
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~ 93 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-D 93 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence 444455566666666666665543 1111 355666677889999999999988433333232 2
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 204 g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
..+|.|++.+.+.+..++..|..+|-.++.+.+...... ...+...+.+. ++.+|..++..+..++..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~----- 161 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSK--NPQVREECAEWLAIILEK----- 161 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCC--CHHHHHHHHHHHHHHHHH-----
Confidence 478999999999887889999999999999877222221 34566666666 678899999999998852
Q ss_pred CCCCchhhhh----cCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 284 HKVEPPLFRD----RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 284 ~~~~~~~l~~----~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+.....+.. ..+++.+..++...+.++|+.|-.++..+...-
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 2211222222 457888889999999999999999999998753
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.9e-05 Score=77.48 Aligned_cols=176 Identities=16% Similarity=0.117 Sum_probs=128.6
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHc
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 245 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~----g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~ 245 (390)
.....+..|+.-+++|++..+ -||..+..|.++ +++..|.+..++++.+|-.....||+|+|..|..+..+|.+.
T Consensus 50 ~i~~~~~tv~~~qssC~A~~s-k~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~l 128 (604)
T KOG4500|consen 50 GIMTASDTVYLFQSSCLADRS-KNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNL 128 (604)
T ss_pred ceeeccchhhhhhHHHHHHHh-hhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhc
Confidence 334567789999999999997 557777777776 567788888888878899999999999999999999999999
Q ss_pred CcHHHHHHHhcCC-----ChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHH
Q 016423 246 AGDLMLQDILGNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAA 318 (390)
Q Consensus 246 gGl~~L~~lL~s~-----~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~a 318 (390)
||-+++++.|..- ....++-.-++.+|++-+ ..+.+.+..+.+.|+++.|+..+.-+ +....|+.+..
T Consensus 129 gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~-----l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~ 203 (604)
T KOG4500|consen 129 GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI-----LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAP 203 (604)
T ss_pred CCceehHhhhccccccCCccHHHHHHHHHHHHHHhh-----CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhc
Confidence 9988888888631 123455555666666665 25677888899999999999888554 78888999888
Q ss_pred HHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHHH
Q 016423 319 IKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQ 351 (390)
Q Consensus 319 L~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l~ 351 (390)
..+|++.-...-..+-..|.+ ...+..|.+..+
T Consensus 204 f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~ 237 (604)
T KOG4500|consen 204 FFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVR 237 (604)
T ss_pred cccHHHHHHHhhhhhhccchHHHHHHHHHHHhhc
Confidence 888876521100111124555 344455544433
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00052 Score=74.30 Aligned_cols=190 Identities=21% Similarity=0.214 Sum_probs=144.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc---------------------------ccccc---ccCCCCChHHHHH
Q 016423 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEP---------------------------IDNAN---GQLNHPDTDIRKI 181 (390)
Q Consensus 132 ~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~---------------------------IDnAn---~lL~s~~~~vR~~ 181 (390)
-|+-.+.+|+....++|-...+||.+.-++-. -||-. .++...+=.||..
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~ 141 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLY 141 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhH
Confidence 45555555555555555555555555444432 22222 4556677889999
Q ss_pred HHHHHHHHhhC-ChHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCC
Q 016423 182 SAWILGKASQN-NPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 259 (390)
Q Consensus 182 Aa~vLgta~QN-Np~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~ 259 (390)
|...|.++..+ -+++|+.++.. -++.+|+.+|.+.-..+|-.|++-|+.++|+|+.-|+.+.=.|.+.-|..++....
T Consensus 142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 142 AIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999888 67899999988 57999999999877889999999999999999999998877899999999997432
Q ss_pred --hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC---C----------hhHHHHHHHHHHHHHh
Q 016423 260 --FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---D----------LDLQEKALAAIKNLLQ 324 (390)
Q Consensus 260 --~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d----------~~v~EkAL~aL~~L~~ 324 (390)
+.--+.-.++++|.+|+. .+......|.+.++++.|.++|+.+ | ..-.-.+|.+|..|+.
T Consensus 222 g~dGgIVveDCL~ll~NLLK-----~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVs 296 (970)
T KOG0946|consen 222 GLDGGIVVEDCLILLNNLLK-----NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVS 296 (970)
T ss_pred CCCCcchHHHHHHHHHHHHh-----hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcC
Confidence 122367889999999995 5778889999999999999999664 2 1233457788888886
Q ss_pred cC
Q 016423 325 LR 326 (390)
Q Consensus 325 ~~ 326 (390)
-+
T Consensus 297 P~ 298 (970)
T KOG0946|consen 297 PG 298 (970)
T ss_pred CC
Confidence 43
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00041 Score=68.00 Aligned_cols=133 Identities=12% Similarity=0.049 Sum_probs=70.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCccchHHHH----
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFY---- 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~L-L~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~---- 243 (390)
.+++++++.+|..|+|+||.+- ..+..|. ..++.|..+ +++++..||..|+.+|+.+....+.....+.
T Consensus 61 ~ll~~~d~~vR~~A~~aLg~lg-~~~~~~~-----~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~ 134 (280)
T PRK09687 61 ELCSSKNPIERDIGADILSQLG-MAKRCQD-----NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQ 134 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhcC-CCccchH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHH
Confidence 4566777777777777777762 2111111 245666655 3344456677777777766433221101100
Q ss_pred ----------------------HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHH
Q 016423 244 ----------------------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 301 (390)
Q Consensus 244 ----------------------~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 301 (390)
....++.|..+|.++ +..+|..|++.|..+-. ....+++.|+
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~--~~~VR~~A~~aLg~~~~--------------~~~~~~~~L~ 198 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDP--NGDVRNWAAFALNSNKY--------------DNPDIREAFV 198 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCC--CHHHHHHHHHHHhcCCC--------------CCHHHHHHHH
Confidence 011344444555443 23345555555544420 1225666777
Q ss_pred HhhcCCChhHHHHHHHHHHHHH
Q 016423 302 DLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 302 ~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
..|...+.+++..|+.+|+.+-
T Consensus 199 ~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 199 AMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred HHhcCCChHHHHHHHHHHHccC
Confidence 7777777788888777776643
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.5e-05 Score=61.85 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCccchHHHHH
Q 016423 178 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 178 vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~--~~~vr~kAL~ALSsLiR~~~~a~~~f~~ 244 (390)
+|..-..+||+++.+|+.+|+.+.+.|+||.++..-.-+ ++-+|..|++||-+|+.+|+.+|..+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 567778999999999999999999999999999986544 3568999999999999999999887754
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00077 Score=66.04 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=67.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCC
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 284 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~ 284 (390)
+++.|+.+|++++..||..|+++|+.+ +...+ ...+.|+.+|.+. +..+|..|++.|..+-
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~-~~~~~--------~~~~~L~~~L~D~--~~~VR~~A~~aLg~~~-------- 220 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSN-KYDNP--------DIREAFVAMLQDK--NEEIRIEAIIGLALRK-------- 220 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC-CCCCH--------HHHHHHHHHhcCC--ChHHHHHHHHHHHccC--------
Confidence 578888888887778888888888887 11111 3467899999876 5668999999888753
Q ss_pred CCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 285 KVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 285 ~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
...+++.|+..|.+++ ++..+..+|+.+-.
T Consensus 221 --------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 221 --------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred --------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 2368999999999876 56667766666553
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0027 Score=71.23 Aligned_cols=172 Identities=15% Similarity=0.105 Sum_probs=126.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.|++..-|.+|.-+|+.++-..+++=..-+. .+++..+..|++..+-||-.|+.||+-+-.++.|-.......--+
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 6788999999999999999998886544333221 467777777888888899999999999999999998888877778
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchH-HHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK-SVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~-~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+.|+..+.+.. .++++..|+..+-++..+ ..++...... .+++. .+.-++.+....++|.++.++++.+..
T Consensus 434 ~aL~~~ld~~~-~~rV~ahAa~al~nf~E~----~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A-- 505 (1075)
T KOG2171|consen 434 PALIALLDSTQ-NVRVQAHAAAALVNFSEE----CDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA-- 505 (1075)
T ss_pred HHHHHHhcccC-chHHHHHHHHHHHHHHHh----CcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH--
Confidence 88999888774 789999999999999852 2333222222 24444 444556777899999999999999863
Q ss_pred hHHHHHHhhCCcHHHHHHHHHHHHH
Q 016423 328 TEALVLKDFCGLDTALERLRQQLQE 352 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~Lr~~l~e 352 (390)
+...|.+ =.+.+...|+.-+..
T Consensus 506 -A~~~F~p--Y~d~~Mp~L~~~L~n 527 (1075)
T KOG2171|consen 506 -AQEKFIP--YFDRLMPLLKNFLQN 527 (1075)
T ss_pred -HhhhhHh--HHHHHHHHHHHHHhC
Confidence 3444432 234555656555543
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00083 Score=68.41 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=120.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHH---HHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCccchHHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLV---QKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~---Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~~a~~~f~~ 244 (390)
++|...+.-+...+.|+|+.++++.+.. ++.-+. ...|-.++++ .++.-..-|..+|..++|. ++-...|..
T Consensus 121 ~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~ 196 (442)
T KOG2759|consen 121 NLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVI 196 (442)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeee
Confidence 5777788889899999999999885422 111222 2233344444 3445567788899999998 444788899
Q ss_pred cCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHH
Q 016423 245 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLL 323 (390)
Q Consensus 245 ~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~ 323 (390)
++|+..++.++.+.+.+..+|-..+|++.-|.. +|...+.+...+.++.|+.++++. ...|..-++.++.++.
T Consensus 197 adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF------n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll 270 (442)
T KOG2759|consen 197 ADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF------NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL 270 (442)
T ss_pred cCcchhhHHHHhccCcchhHHHHHHHHHHHhhc------CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999996555688999999999998874 566667788889999999999875 3455555566677777
Q ss_pred hcCh------hHHHHHHhhCCcHHHHHHHH
Q 016423 324 QLRT------TEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 324 ~~~~------~~r~~~~~~~gL~~~L~~Lr 347 (390)
.-++ +....+. .|++.+.+..|.
T Consensus 271 ~k~~~~~~~k~~~~~mv-~~~v~k~l~~L~ 299 (442)
T KOG2759|consen 271 DKGPDRETKKDIASQMV-LCKVLKTLQSLE 299 (442)
T ss_pred ccCchhhHHHHHHHHHH-hcCchHHHHHHH
Confidence 7663 2333444 677766666553
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0028 Score=71.53 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhhccccccc---ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHH
Q 016423 147 LEDSQRALQELLILVEPIDNAN---GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVK 223 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~IDnAn---~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~k 223 (390)
.+-|..|.+.|.++.+...... ..|.++++.||..|+.+|+.+-. +-.+.|+..|.+++..||..
T Consensus 666 ~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~~VR~~ 733 (897)
T PRK13800 666 AAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGDPDHRVRIE 733 (897)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCHHHHHH
Confidence 3445566666666655443322 56677777788887777776521 12334556666666666666
Q ss_pred HHHHHHHH---------hhCCccc-----hHHHHHc-----CcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh-----
Q 016423 224 ALYTVSSL---------IRNNLAG-----QEMFYVE-----AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----- 279 (390)
Q Consensus 224 AL~ALSsL---------iR~~~~a-----~~~f~~~-----gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~----- 279 (390)
|+++|+.+ +.+..+- ...+... .+++.|..+++++ +..+|..|+..|..+-...
T Consensus 734 Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~--d~~VR~aA~~aLg~~g~~~~~~~~ 811 (897)
T PRK13800 734 AVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDP--DPLVRAAALAALAELGCPPDDVAA 811 (897)
T ss_pred HHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCC--CHHHHHHHHHHHHhcCCcchhHHH
Confidence 66666643 1110000 1111111 1256677777765 4667777777776654210
Q ss_pred ----hhcCCCCCchh-------hhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 280 ----LENMHKVEPPL-------FRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 280 ----l~~~~~~~~~~-------l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
+.+.++..+.. +-....++.|+.+|..++..||..|+.+|..+
T Consensus 812 l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 812 ATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 11111111111 11234456666666666666666666666654
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0008 Score=72.86 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=101.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCC
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~ 285 (390)
+|..+.+|.+..+.++..|-+-|-=+|+++..+...+...||+..|+.+|.++ ...+++.||+.|.+|+.. ..+.
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~---~~~~ 309 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFG---KSTD 309 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhcc---cCCc
Confidence 78899999998888999888888889999999999999999999999999987 566899999999999953 2344
Q ss_pred CCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhc
Q 016423 286 VEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~ 325 (390)
+.+-.+.+.+=++.++.+|... |.+++|.+..+|++|.+.
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 5667788899999999999874 899999999999999985
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.008 Score=64.26 Aligned_cols=184 Identities=15% Similarity=0.111 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc----------------ccCCC-------CChHHHHHHHHH
Q 016423 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN----------------GQLNH-------PDTDIRKISAWI 185 (390)
Q Consensus 129 d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn----------------~lL~s-------~~~~vR~~Aa~v 185 (390)
..+.+++|+..|+... .++|..+|--+-.++..-|.-. ++|.+ +....+.-|..+
T Consensus 3 ~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred chHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 3466778888887765 6777777777777777654211 67765 456789999999
Q ss_pred HHHHhhCChHHH--HHHHhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhH
Q 016423 186 LGKASQNNPLVQ--KQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 262 (390)
Q Consensus 186 Lgta~QNNp~~Q--~~~le~g~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~ 262 (390)
|++.+. -|... ..+. +-+|.|+.++.+.+. ++..-|+..|.+++ .+|.++.+|.+.|+++.|.+++.+. .
T Consensus 81 L~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~---~ 153 (543)
T PF05536_consen 81 LAAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ---S 153 (543)
T ss_pred HHHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC---c
Confidence 999988 45543 2333 369999999988776 78889999999999 8899999999999999999999874 3
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCc-h-hhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 263 RLHRKAVSLVGDLAKCQLENMHKVEP-P-LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 263 klr~KA~~LLs~L~~~~l~~~~~~~~-~-~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..+-.|+.++.+++... ..+.. + .-.-..++..+...+...+....-..+..|..++..
T Consensus 154 ~~~E~Al~lL~~Lls~~----~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSRL----GQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred chHHHHHHHHHHHHHhc----chhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 45778999999998631 11110 0 001124445555555555444555556666666654
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0016 Score=64.41 Aligned_cols=158 Identities=19% Similarity=0.158 Sum_probs=112.5
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhc------CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLEL------GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~------g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
++++++.......|+.+.+.+|...+.|.+. ....++++++.+++..+..+|.+.++.++...+....... .+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HH
Confidence 4688899999999999999999888888883 3688999999988888999999999999998776554422 23
Q ss_pred cHHHHHHHhcCC--ChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhh------cC-CChhHHHHHHH
Q 016423 247 GDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT------AS-ADLDLQEKALA 317 (390)
Q Consensus 247 Gl~~L~~lL~s~--~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL------~~-~d~~v~EkAL~ 317 (390)
-++.+...+.+. +.+..++.-++.++..|+. .+..+..+.+.|.++.+..+| ++ .+.+++..++.
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~------~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR------SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT------SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC------cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 345555555532 1245567778899999984 677888999999999999999 23 37899999999
Q ss_pred HHHHHHhcChhHHHHHHhhCCc
Q 016423 318 AIKNLLQLRTTEALVLKDFCGL 339 (390)
Q Consensus 318 aL~~L~~~~~~~r~~~~~~~gL 339 (390)
|++.|.-.. .....+. .+++
T Consensus 221 ~lWlLSF~~-~~~~~~~-~~~~ 240 (312)
T PF03224_consen 221 CLWLLSFEP-EIAEELN-KKYL 240 (312)
T ss_dssp HHHHHTTSH-HHHHHHH-TTSH
T ss_pred HHHHHhcCH-HHHHHHh-ccch
Confidence 999988754 4555565 3443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0058 Score=63.76 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=103.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+-|.++++.+|..|..+|++++ +|..-+. .++.+.+++.++++-||.+|+.|+..+.+.+|...... -+
T Consensus 86 kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~----~~ 154 (526)
T PF01602_consen 86 KDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE----LI 154 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG----HH
T ss_pred HhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH----HH
Confidence 4578999999999999999996 4544433 57889999999889999999999999999988865441 26
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHH-hhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDL-AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L-~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+.+..+|.++ ++.++..|+.++..+ .. +.... -.-..+++.+..++...++-.+.++++++..+....+
T Consensus 155 ~~l~~lL~d~--~~~V~~~a~~~l~~i~~~------~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~ 224 (526)
T PF01602_consen 155 PKLKQLLSDK--DPSVVSAALSLLSEIKCN------DDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP 224 (526)
T ss_dssp HHHHHHTTHS--SHHHHHHHHHHHHHHHCT------HHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH
T ss_pred HHHhhhccCC--cchhHHHHHHHHHHHccC------cchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh
Confidence 7889999765 677899999999998 21 11101 1123455666666677888899999988888776543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=52.00 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=66.1
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCC
Q 016423 206 LSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 284 (390)
Q Consensus 206 l~~Ll~LL-~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~ 284 (390)
||.|++.| ++++..+|..|+++|+.+ . ....++.|..+++++ ++.+|..|++.|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~---~--------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL---G--------DPEAIPALIELLKDE--DPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC---T--------HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc---C--------CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhC--------
Confidence 68899999 666788999999999932 1 113488999999775 7789999999998763
Q ss_pred CCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHH
Q 016423 285 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIK 320 (390)
Q Consensus 285 ~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~ 320 (390)
....++.|..++.++ +..++..|+.+|+
T Consensus 60 --------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 345788899988886 5566888887764
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00066 Score=53.54 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=61.0
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
+++++.+|..|+++||..- ++ .++|.|+.++++++..+|..|++||+.+ .....++.|
T Consensus 10 ~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i-----------~~~~~~~~L 67 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRI-----------GDPEAIPAL 67 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCC-----------HHHHTHHHH
T ss_pred cCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------CCHHHHHHH
Confidence 7889999999999999441 11 3599999999988889999999999976 134578899
Q ss_pred HHHhcCCChhHHHHHHHHHHH
Q 016423 252 QDILGNSSFEIRLHRKAVSLV 272 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LL 272 (390)
..++.++. +..+|..|+..|
T Consensus 68 ~~~l~~~~-~~~vr~~a~~aL 87 (88)
T PF13646_consen 68 IKLLQDDD-DEVVREAAAEAL 87 (88)
T ss_dssp HHHHTC-S-SHHHHHHHHHHH
T ss_pred HHHHcCCC-cHHHHHHHHhhc
Confidence 99998763 455677776655
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0087 Score=68.72 Aligned_cols=180 Identities=13% Similarity=0.103 Sum_probs=121.3
Q ss_pred cCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHc-C
Q 016423 170 QLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE-A 246 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~-g 246 (390)
.|.+..++|..-.+.||-++.=+ .......+.+.|-+-.|....-... .......|.||=||--|+..+...|+.- |
T Consensus 402 QL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDG 481 (2195)
T KOG2122|consen 402 QLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDG 481 (2195)
T ss_pred HHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccc
Confidence 34555556665566666666544 2234555555666666655543222 1222334555556666777777788765 4
Q ss_pred cHHHHHHHhcCC--ChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 247 GDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 247 Gl~~L~~lL~s~--~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
.+.+|+..|.-. ....++.-.+-.+|.|..+.. ...++.++.+.+++++..|..+|++....+...++.+|++|..
T Consensus 482 ALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~I--At~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA 559 (2195)
T KOG2122|consen 482 ALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLI--ATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 559 (2195)
T ss_pred hHHHHHhhccccCCcchhhhhhcCccHHHHHHhHh--hccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhc
Confidence 589999999744 234556666777777766532 2467889999999999999999999999999999999999998
Q ss_pred cChhHHHHHHhhCCcHHHHHHHHHHHH
Q 016423 325 LRTTEALVLKDFCGLDTALERLRQQLQ 351 (390)
Q Consensus 325 ~~~~~r~~~~~~~gL~~~L~~Lr~~l~ 351 (390)
-.+..++.+.+.+.+--+.+++++.++
T Consensus 560 R~p~DQq~LwD~gAv~mLrnLIhSKhk 586 (2195)
T KOG2122|consen 560 RSPEDQQMLWDDGAVPMLRNLIHSKHK 586 (2195)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhhhh
Confidence 777777777755555555555555544
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.019 Score=59.92 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=104.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+++.+++..+|..+--.+......+|..- ++ +++.|.+=+.++++.+|.-|+.+||++. .+.-.. .-.
T Consensus 49 ~l~~s~~~~~Krl~yl~l~~~~~~~~~~~--~l---~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~-----~l~ 116 (526)
T PF01602_consen 49 KLISSKDLELKRLGYLYLSLYLHEDPELL--IL---IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE-----PLI 116 (526)
T ss_dssp CTCSSSSHHHHHHHHHHHHHHTTTSHHHH--HH---HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH-----HHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHhhcchhHH--HH---HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh-----HHH
Confidence 67789999999999999999999998722 22 5677778888888889999999999986 233222 246
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
+.+..++.++ ++.+|++|+..+..+.. .+|+. +... +++.+..+|...|+.++..|+.++..+
T Consensus 117 ~~v~~ll~~~--~~~VRk~A~~~l~~i~~-----~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 117 PDVIKLLSDP--SPYVRKKAALALLKIYR-----KDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHSS--SHHHHHHHHHHHHHHHH-----HCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--chHHHHHHHHHHHHHhc-----cCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 7888888887 56899999999999985 23332 2233 899999999989999999999999998
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=67.42 Aligned_cols=151 Identities=13% Similarity=0.117 Sum_probs=116.0
Q ss_pred cCCCCChHHH-HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 170 QLNHPDTDIR-KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 170 lL~s~~~~vR-~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.++--.+++. ++++-+|-.+...-...+--...+.+.++|+++|+.+...+..-++.+|++.+-.+.+-+..|...|-+
T Consensus 396 ~vn~~~d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iI 475 (743)
T COG5369 396 KVNRKQDDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSII 475 (743)
T ss_pred cCCccchHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHH
Confidence 4443334443 345566666666655566667777888999999988655556678999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+|+..+.++ |..+|.++.|.++++.. +-++..+=.+...--+..++++.+.++..+|+.++..|.++.+..
T Consensus 476 dvl~~~v~sK--DdaLqans~wvlrHlmy----ncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~ 547 (743)
T COG5369 476 DVLVNLVMSK--DDALQANSEWVLRHLMY----NCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT 547 (743)
T ss_pred HHHHHHhhcc--hhhhhhcchhhhhhhhh----cCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence 9999999976 55799999999999995 223332223444555678889999999999999999999999854
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=44.00 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=34.8
Q ss_pred hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016423 194 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 232 (390)
Q Consensus 194 p~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLi 232 (390)
+..+..+.+.|++|+|++++.+++..++..|++||++++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346677889999999999999888899999999999986
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0014 Score=45.08 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=35.2
Q ss_pred ccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 016423 236 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 236 ~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
+.....+.+.||++.|+.+|.++ +..++..|+|+|++|+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSP--DPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCC--CHHHHHHHHHHHHHHh
Confidence 56678889999999999999976 7889999999999997
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0097 Score=67.22 Aligned_cols=155 Identities=17% Similarity=0.093 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHhhccccccc---ccCCCCChHHHHHHHHHHHHH----------hhCChHHHHHHHhc---------
Q 016423 146 SLEDSQRALQELLILVEPIDNAN---GQLNHPDTDIRKISAWILGKA----------SQNNPLVQKQVLEL--------- 203 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnAn---~lL~s~~~~vR~~Aa~vLgta----------~QNNp~~Q~~~le~--------- 203 (390)
++.-|..|++.|..+-. .... ..|.++++.||..|+++|+.+ .-.|+.+|..+.+.
T Consensus 697 d~~VR~~A~~aL~~~~~--~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 697 DPVVRAAALDVLRALRA--GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred CHHHHHHHHHHHHhhcc--CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccc
Confidence 34555566665544310 1111 566777778888887777753 22355666555442
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-------------------hHHHHHc---CcHHHHHHHhcCCChh
Q 016423 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-------------------QEMFYVE---AGDLMLQDILGNSSFE 261 (390)
Q Consensus 204 g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-------------------~~~f~~~---gGl~~L~~lL~s~~~d 261 (390)
..++.|+.++++++..+|..|+.+|+.+-.. +.. ..++... ..++.|..+|.++ +
T Consensus 775 ~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~--~ 851 (897)
T PRK13800 775 PAGDAVRALTGDPDPLVRAAALAALAELGCP-PDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDP--H 851 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-chhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCC--C
Confidence 2368899999888888999999999877221 110 0011111 1234444444443 3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHH
Q 016423 262 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 320 (390)
Q Consensus 262 ~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~ 320 (390)
..+|..|+..|..+- .+....+.|...++.+|.+|+..|..+|.
T Consensus 852 ~~VR~~A~~aL~~~~---------------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 852 LDVRKAAVLALTRWP---------------GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHHHhccC---------------CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 344445544444431 02245667788888889999999988875
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.094 Score=54.19 Aligned_cols=209 Identities=15% Similarity=0.062 Sum_probs=145.5
Q ss_pred HHHHHHHhhcccccccccCCCCC--hHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 016423 153 ALQELLILVEPIDNANGQLNHPD--TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230 (390)
Q Consensus 153 aLd~Le~lve~IDnAn~lL~s~~--~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSs 230 (390)
.++.+.++|++.. -+.+.. -.+-..+|..+.-+.-....-|..+-....+..++.-+.+++......+..||+|
T Consensus 266 l~e~~~~lv~~~k----~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigN 341 (604)
T KOG4500|consen 266 LLEDSIDLVRNMK----DFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGN 341 (604)
T ss_pred hHHHHHHHHHhcc----cccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 3455666666531 122222 2344567777766666655455544333388899999999888888889999999
Q ss_pred HhhCCccchHHHHHcCcHHHHHHHhcCC---ChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC
Q 016423 231 LIRNNLAGQEMFYVEAGDLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 307 (390)
Q Consensus 231 LiR~~~~a~~~f~~~gGl~~L~~lL~s~---~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 307 (390)
+.|+... ...|++.+-+..|+.+|... +.+++++--++.+|++|+ .....+..+...|+.+.+...++..
T Consensus 342 faR~D~~-ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~------IPv~nka~~~~aGvteaIL~~lk~~ 414 (604)
T KOG4500|consen 342 FARRDDI-CIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM------IPVSNKAHFAPAGVTEAILLQLKLA 414 (604)
T ss_pred hhccchH-HHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc------ccCCchhhccccchHHHHHHHHHhc
Confidence 9998544 57788899999999998642 247888999999999998 3556677899999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcH---HHHHHHHHHHHHhhhhhhhhhhH-HHHHHHHHHHHHHHHHHhhh
Q 016423 308 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD---TALERLRQQLQEVMLEEDQRDYA-MDVEALRREVELIFFRKLDD 383 (390)
Q Consensus 308 d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~---~~L~~Lr~~l~el~~~e~~~ey~-~dl~~lr~e~~~~~~~~~~~ 383 (390)
.+.++-+-+.++.-+.... .+- .|.|. .++++| ...-+..||+ --.|..|-=.-+|-|.|+++
T Consensus 415 ~ppv~fkllgTlrM~~d~q-----e~~-a~eL~kn~~l~ekL-------v~Wsks~D~aGv~gESnRll~~lIkHs~~kd 481 (604)
T KOG4500|consen 415 SPPVTFKLLGTLRMIRDSQ-----EYI-ACELAKNPELFEKL-------VDWSKSPDFAGVAGESNRLLLGLIKHSKYKD 481 (604)
T ss_pred CCcchHHHHHHHHHHHhch-----HHH-HHHHhcCHHHHHHH-------HHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence 9999999999988887532 222 34442 233333 2333356666 34556676677777877765
Q ss_pred cc
Q 016423 384 SG 385 (390)
Q Consensus 384 ~~ 385 (390)
++
T Consensus 482 v~ 483 (604)
T KOG4500|consen 482 VI 483 (604)
T ss_pred hH
Confidence 54
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.094 Score=57.86 Aligned_cols=208 Identities=14% Similarity=0.089 Sum_probs=150.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhccccccc--------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHH
Q 016423 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNAN--------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVL 201 (390)
Q Consensus 136 ~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn--------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~l 201 (390)
.+-.|-+.+...|-...|--.|-+++|-+--.- +++.-..-+|-+++..+|-.+.+-+| .+++
T Consensus 215 ~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL 291 (1051)
T KOG0168|consen 215 VLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAIL 291 (1051)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHH
Confidence 333344455567777888888888888653321 67778889999999999999999988 4689
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhh
Q 016423 202 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 281 (390)
Q Consensus 202 e~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~ 281 (390)
+.|+|...+..|+--+..++++|+...+|+|..-++-.-.|+ ...+++|..+|+.. |.+....++-.+.+++..-
T Consensus 292 ~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v-~ealPlL~~lLs~~--D~k~ies~~ic~~ri~d~f-- 366 (1051)
T KOG0168|consen 292 QAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV-MEALPLLTPLLSYQ--DKKPIESVCICLTRIADGF-- 366 (1051)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH-HHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhc--
Confidence 999999999999766678899999999999999544333333 46799999999976 6677888888888888532
Q ss_pred cCCCCCchhhhhcCchHHHHHhhcCCC----hhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHH
Q 016423 282 NMHKVEPPLFRDRFFLKSVVDLTASAD----LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE 352 (390)
Q Consensus 282 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d----~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~e 352 (390)
.+.++..+.+..+|++....++|.... ..+---..+.|..+.+..+.-+..+- ..++-.+|..+=+.|..
T Consensus 367 ~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 367 QHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQGYSK 440 (1051)
T ss_pred ccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHhccCc
Confidence 245677888999999999999997753 34555566666666664333222221 34455555555555544
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.067 Score=55.56 Aligned_cols=148 Identities=14% Similarity=-0.007 Sum_probs=113.2
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLEL-----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-----g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
....+++.....-.|..+.+.+|..-..|.+. ....+++.+|..++..+..+|.+.++.++...+.........-
T Consensus 64 ~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~ 143 (429)
T cd00256 64 QIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDY 143 (429)
T ss_pred ccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHH
Confidence 35678899999999999999999988888886 4678888999988778899999999999976554322211111
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHh
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~ 324 (390)
-++.|...|.++. +...+.=++.++..|+. .+..+..+.+.+.++.|+++|+.. +.+++-.++-|++.|.=
T Consensus 144 ~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~------~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF 216 (429)
T cd00256 144 YFNWLKEQLNNIT-NNDYVQTAARCLQMLLR------VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTF 216 (429)
T ss_pred HHHHHHHHhhccC-CcchHHHHHHHHHHHhC------CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 2345666666542 34456667788888884 677888888888999999999763 67999999999999986
Q ss_pred cC
Q 016423 325 LR 326 (390)
Q Consensus 325 ~~ 326 (390)
..
T Consensus 217 ~~ 218 (429)
T cd00256 217 NP 218 (429)
T ss_pred cH
Confidence 53
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0049 Score=52.97 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCc
Q 016423 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGA 205 (390)
Q Consensus 126 ~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~ 205 (390)
.+++.+++|..+++|..+ .++.+.+-||.=||..+...|..+..+-+.|+
T Consensus 38 ~~~~~~llk~L~~lL~~s------------------------------~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~ 87 (119)
T PF11698_consen 38 EENNFELLKKLIKLLDKS------------------------------DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGA 87 (119)
T ss_dssp SSGGGHHHHHHHHHH-SH------------------------------HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSH
T ss_pred HHcccHHHHHHHHHHccC------------------------------CCcceeehhhcchHHHHHHChhHHHHHHhcCh
Confidence 346889999999888432 24556677999999999999999999988999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCC
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~ 235 (390)
=..++.|+.+++++||..||.|+.-++.++
T Consensus 88 K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 88 KERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999987653
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.017 Score=64.65 Aligned_cols=172 Identities=17% Similarity=0.143 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHhhcc----ccccc---------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC
Q 016423 149 DSQRALQELLILVEP----IDNAN---------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 215 (390)
Q Consensus 149 ~~~~aLd~Le~lve~----IDnAn---------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s 215 (390)
-|..||.-|-.+++- +|.|- ++|.|+-.++|--=+.+=+.+..-.|.||..+++.++-...++.|..
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 455666666555543 33332 89999999999999999999999999999999999888888888877
Q ss_pred C-C--HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh
Q 016423 216 S-F--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 292 (390)
Q Consensus 216 ~-~--~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~ 292 (390)
. . ++-|.-|.+-|+.+++||+.+|++..+.|-+.+-...|.++. .+-+|.=.|-+|.-|-.. .+..+=.=.
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d-----~~~Arw~G~ 639 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWED-----YDEARWSGR 639 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhh-----cchhhhccc
Confidence 3 2 356888999999999999999999998888888888888752 456777788888877741 222222224
Q ss_pred hcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 293 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 293 ~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
..+....|..+|+.+-++|+-.|+.||++++..+
T Consensus 640 r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 640 RDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred cccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 6688889999999999999999999999999865
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0063 Score=50.96 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 221 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 221 r~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
|.-.+-.|++++-.++..|+.+.+.||++++.....-+..++.+|-.|.|.|.+|+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e 59 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCE 59 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHh
Confidence 556788899999999999999999999999999987555688999999999999995
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.051 Score=60.17 Aligned_cols=181 Identities=14% Similarity=0.068 Sum_probs=115.4
Q ss_pred ChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHH-----hhcccccc-cccCCCCChHHHHHHHHHHHHHhhCChHHHHH
Q 016423 128 SDAQLIQIAIDDLNNSTLS--LEDSQRALQELLI-----LVEPIDNA-NGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 199 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~~~~s--~e~~~~aLd~Le~-----lve~IDnA-n~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~ 199 (390)
..++++--++..|.+.-.+ +--|--||-.|-. +++.+-.+ .++|.+.++-||..|+-++..+.+.+|. .
T Consensus 98 ~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---l 174 (746)
T PTZ00429 98 LQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---L 174 (746)
T ss_pred cChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---c
Confidence 3455555555555543332 3333334444322 22222222 1678899999999999999999999884 4
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh
Q 016423 200 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 279 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~ 279 (390)
+.+.|.++.|.++|.+.+..|...|+.+|..+...+|.... ...+-+.-|...|.+- +.-.|...+-+|....
T Consensus 175 v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~--~EW~Qi~IL~lL~~y~--- 247 (746)
T PTZ00429 175 FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPEC--NEWGQLYILELLAAQR--- 247 (746)
T ss_pred ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcC--ChHHHHHHHHHHHhcC---
Confidence 55678899999999988888999999999999876654322 2233344455555442 4556666665554321
Q ss_pred hhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 280 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 280 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
|..... -..++..+...|++.+..|.-.|++++..+...
T Consensus 248 -----P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 248 -----PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred -----CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 211111 136777788888888888888888887777653
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.14 Score=57.94 Aligned_cols=207 Identities=18% Similarity=0.223 Sum_probs=131.1
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC--
Q 016423 115 MEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-- 192 (390)
Q Consensus 115 ~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-- 192 (390)
..|...+..+.-| |.++.++|-+.+++-..+.. ...+|.++. =.+.++.+|..|+-.+-..+.-
T Consensus 4 ~~l~qLl~~l~sp-Dn~vr~~Ae~~l~~~~~~~~-~l~~L~~i~------------~~~~~p~~Rq~aaVl~Rkl~~~~w 69 (1075)
T KOG2171|consen 4 APLEQLLQQLLSP-DNEVRRQAEEALETLAKTEP-LLPALAHIL------------ATSADPQVRQLAAVLLRKLLTKHW 69 (1075)
T ss_pred hHHHHHHHHhcCC-CchHHHHHHHHHHHhhcccc-hHHHHHHHH------------hcCCChHHHHHHHHHHHHHHHHHh
Confidence 3455566655554 56778888888876443333 444555552 2578899999988776665432
Q ss_pred ---ChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHH
Q 016423 193 ---NPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 268 (390)
Q Consensus 193 ---Np~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA 268 (390)
+..+|+.+ -..|+..+.+++ ..+|.|-.-.|+.+.|+--+. . =.+.++.|.++.+++ ++.+|--|
T Consensus 70 ~~l~~e~~~si-----ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e--~--WPell~~L~q~~~S~--~~~~rE~a 138 (1075)
T KOG2171|consen 70 SRLSAEVQQSI-----KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE--K--WPELLQFLFQSTKSP--NPSLRESA 138 (1075)
T ss_pred hcCCHHHHHHH-----HHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc--c--hHHHHHHHHHHhcCC--CcchhHHH
Confidence 44455543 345666666655 579999999999999996665 1 134567777777776 67789999
Q ss_pred HHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 269 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 269 ~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
.++|+.+.... .......+ ..+.+.+.+.+..++..++-.|++|+.+++...+.....+..+. .+|..+-+
T Consensus 139 l~il~s~~~~~----~~~~~~~~--~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~---~llP~~l~ 209 (1075)
T KOG2171|consen 139 LLILSSLPETF----GNTLQPHL--DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR---DLLPSLLN 209 (1075)
T ss_pred HHHHHhhhhhh----ccccchhH--HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH---HHhHHHHH
Confidence 99999998521 22222211 13445556666777667999999999999987632334443232 33444444
Q ss_pred HHHHhhh
Q 016423 349 QLQEVML 355 (390)
Q Consensus 349 ~l~el~~ 355 (390)
.+.+..+
T Consensus 210 vl~~~i~ 216 (1075)
T KOG2171|consen 210 VLQEVIQ 216 (1075)
T ss_pred HhHhhhh
Confidence 4555444
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.22 Score=55.32 Aligned_cols=152 Identities=14% Similarity=0.157 Sum_probs=101.9
Q ss_pred HhHHHHHHHHHHcC-CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-cccccc-------ccCCCCChHHHHHH
Q 016423 112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNAN-------GQLNHPDTDIRKIS 182 (390)
Q Consensus 112 ~r~~~L~eal~~~~-~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve-~IDnAn-------~lL~s~~~~vR~~A 182 (390)
+|++-+++++..+. |.+-..+.-+.+..+... +.+.|.-..--+..+-+ +-|.|- +-|.++++-||..|
T Consensus 48 ~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLA 125 (746)
T PTZ00429 48 RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALA 125 (746)
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 36777777777663 444445555555555433 44544443322333333 233332 55778999999999
Q ss_pred HHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhH
Q 016423 183 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 262 (390)
Q Consensus 183 a~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~ 262 (390)
...++.+-- |. +++. .++.+.+.+.+.++-||.+|+.|+..+-+.+|.- +...+-++.|..+|.++ ++
T Consensus 126 LRtLs~Ir~--~~----i~e~-l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel---v~~~~~~~~L~~LL~D~--dp 193 (746)
T PTZ00429 126 VRTMMCIRV--SS----VLEY-TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL---FYQQDFKKDLVELLNDN--NP 193 (746)
T ss_pred HHHHHcCCc--HH----HHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc---ccccchHHHHHHHhcCC--Cc
Confidence 999998732 22 2222 4667788888888889999999999999887753 33344567788888876 67
Q ss_pred HHHHHHHHHHHHHhh
Q 016423 263 RLHRKAVSLVGDLAK 277 (390)
Q Consensus 263 klr~KA~~LLs~L~~ 277 (390)
-+...|+.+|..+..
T Consensus 194 ~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 194 VVASNAAAIVCEVND 208 (746)
T ss_pred cHHHHHHHHHHHHHH
Confidence 789999999999974
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.58 Score=52.56 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=83.5
Q ss_pred HHHHHHHHHHh------cCCCCHHHHHHHHHHHHHhhccccc-c---c-----------ccCCCCChHHHHHHHHHHHHH
Q 016423 131 QLIQIAIDDLN------NSTLSLEDSQRALQELLILVEPIDN-A---N-----------GQLNHPDTDIRKISAWILGKA 189 (390)
Q Consensus 131 ~~Mk~~l~~l~------~~~~s~e~~~~aLd~Le~lve~IDn-A---n-----------~lL~s~~~~vR~~Aa~vLgta 189 (390)
..|.=++.+|+ .+....-.+..||-.+--+++-+.. + + ..++|+.--+|++|||+++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 45566677776 3334456777888877777765543 2 2 456788888999999999999
Q ss_pred hhCChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHh
Q 016423 190 SQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 255 (390)
Q Consensus 190 ~QNNp~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL 255 (390)
+.-+=+-+..+.+ ++....+.+.++ .-+|++-|..||.++|++++.+-..+. ..-.+++..+|
T Consensus 490 ~~~df~d~~~l~~--ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~-~hvp~~mq~lL 553 (1010)
T KOG1991|consen 490 SSIDFKDPNNLSE--ALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS-AHVPPIMQELL 553 (1010)
T ss_pred HhccCCChHHHHH--HHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh-hhhhHHHHHHH
Confidence 8555444554544 567777777744 458999999999999999887744443 33334444444
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.11 Score=55.58 Aligned_cols=156 Identities=16% Similarity=0.200 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 209 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~L 209 (390)
++.+.+..++|.+.. +..+...++..+...+ ..+...+..|+..|..-...=|..|+. +|..+
T Consensus 2 ie~lY~~~~~L~~a~-d~~~~~~~y~~il~~~-----------kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~ 64 (556)
T PF05918_consen 2 IEKLYENYEILADAK-DKSQHEEDYKEILDGV-----------KGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQ 64 (556)
T ss_dssp HHHHHHHHHHHHHTG-GGGGGHHHHHHHHHGG-----------GS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHH
T ss_pred HHHHHHHHhHhhcCC-CcccCHHHHHHHHHHc-----------cCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHH
Confidence 355666667776642 2223333444443322 257889999999999999999999998 56679
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCC-hhHHHHHHHHHHHHHHhhhhhhcCCCCCc
Q 016423 210 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS-FEIRLHRKAVSLVGDLAKCQLENMHKVEP 288 (390)
Q Consensus 210 l~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~-~d~klr~KA~~LLs~L~~~~l~~~~~~~~ 288 (390)
+.|..+++..+|..|+-+|..+|++++.-...+ ..+|.++|+++. ....+..++ |..|+. .+
T Consensus 65 ~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~s---L~~ll~-----~d---- 127 (556)
T PF05918_consen 65 LDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNS---LMSLLK-----QD---- 127 (556)
T ss_dssp HHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHH---HHHHHH-----H-----
T ss_pred HHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHH---HHHHHh-----cC----
Confidence 999999999999999999999999988776665 368999999763 222233333 333332 11
Q ss_pred hhhhhcCchHHHHHhhc---CCChhHHHHHHHHHHHHH
Q 016423 289 PLFRDRFFLKSVVDLTA---SADLDLQEKALAAIKNLL 323 (390)
Q Consensus 289 ~~l~~~g~v~~Lv~lL~---~~d~~v~EkAL~aL~~L~ 323 (390)
..+.+..+...+. +.|..++|+++..|..=+
T Consensus 128 ----~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 128 ----PKGTLTGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp ----HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred ----cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 1233334433333 446678888877665433
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.18 Score=54.13 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=116.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHH---HHHHhcCcHHHHHHhhcCC-------CHHHHHHHHHHHHHHhhCCccc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQ---KQVLELGALSKLMKMVKSS-------FVEEAVKALYTVSSLIRNNLAG 238 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q---~~~le~g~l~~Ll~LL~s~-------~~~vr~kAL~ALSsLiR~~~~a 238 (390)
.+|++.+++=|..+.-.+..++.+++..+ ..+.+.=+.+-|-+||.+. ....+.=|+.-|+++++. |..
T Consensus 12 ~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~-~~~ 90 (543)
T PF05536_consen 12 SLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD-PEL 90 (543)
T ss_pred HHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC-hhh
Confidence 57888888899999999999999987433 3477775578888888873 234566788889999984 332
Q ss_pred hHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHH
Q 016423 239 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 318 (390)
Q Consensus 239 ~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~a 318 (390)
...-.-.+=++.|.+++.+.. +..+...+..+|..+++ .++-...+.+.|.++.|++.+.+ .....|.|+.+
T Consensus 91 a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias------~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 91 ASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLLAIAS------SPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred hcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHc------CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 222223467999999998763 34688899999999984 78888999999999999999988 55789999999
Q ss_pred HHHHHhcC
Q 016423 319 IKNLLQLR 326 (390)
Q Consensus 319 L~~L~~~~ 326 (390)
+..++...
T Consensus 163 L~~Lls~~ 170 (543)
T PF05536_consen 163 LLNLLSRL 170 (543)
T ss_pred HHHHHHhc
Confidence 99988753
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.08 Score=58.00 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=146.8
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc---c------ccC--CCCChHHHHHHHHHHHHHhhCC--
Q 016423 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA---N------GQL--NHPDTDIRKISAWILGKASQNN-- 193 (390)
Q Consensus 127 ~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnA---n------~lL--~s~~~~vR~~Aa~vLgta~QNN-- 193 (390)
++.++.+....+-+.++. -.+||-.|.--|--+-...-.+ . +.| ...++++-..|...+..+..+.
T Consensus 18 ~s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred ccHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 456667777777776643 3556655544332222222111 1 233 2478888899999998888775
Q ss_pred ------hH--------HHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-hHHHHH-cCcHHHHHHHhc
Q 016423 194 ------PL--------VQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYV-EAGDLMLQDILG 256 (390)
Q Consensus 194 ------p~--------~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-~~~f~~-~gGl~~L~~lL~ 256 (390)
+. .-+.|++. +-+..|+..+...+-.||..++--||+++++-|+- ++++.. .-|++-|+.+|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 22 23556655 67888889998877789999999999999997765 444443 469999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC----ChhHHHHHHHHHHHHHhcChhHHHH
Q 016423 257 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA----DLDLQEKALAAIKNLLQLRTTEALV 332 (390)
Q Consensus 257 s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~----d~~v~EkAL~aL~~L~~~~~~~r~~ 332 (390)
+.. ..+|-.++.+|..|+ +.++...+.+.=.++...|.+++... .--|.+-+|..|.+|+..+..-++.
T Consensus 177 Dsr--E~IRNe~iLlL~eL~-----k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~ 249 (970)
T KOG0946|consen 177 DSR--EPIRNEAILLLSELV-----KDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNF 249 (970)
T ss_pred hhh--hhhchhHHHHHHHHH-----ccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhH
Confidence 863 347888999999998 46777777777789999999999653 3478999999999999988777888
Q ss_pred HHhhCCc
Q 016423 333 LKDFCGL 339 (390)
Q Consensus 333 ~~~~~gL 339 (390)
|+ .++-
T Consensus 250 Fr-E~~~ 255 (970)
T KOG0946|consen 250 FR-EGSY 255 (970)
T ss_pred Hh-cccc
Confidence 87 5553
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.036 Score=49.03 Aligned_cols=118 Identities=9% Similarity=0.045 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 254 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~l 254 (390)
+.+-+++..--|++.+- .|..-....+.+++..++.-|...+..+.+.++.+|+|+|-+ +.+.+...+++|++.++.+
T Consensus 30 ~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I~ea~g~plii~~ 107 (173)
T KOG4646|consen 30 NIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFIREALGLPLIIFV 107 (173)
T ss_pred cHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHHHHhcCCceEEee
Confidence 44444444444445433 466777888899999999999998888899999999999977 5566777899999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHH
Q 016423 255 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 301 (390)
Q Consensus 255 L~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 301 (390)
++++ ...+.--|+.++.+|. ......++.+....+++.+-
T Consensus 108 lssp--~e~tv~sa~~~l~~l~-----~~~Rt~r~ell~p~Vv~~v~ 147 (173)
T KOG4646|consen 108 LSSP--PEITVHSAALFLQLLE-----FGERTERDELLSPAVVRTVQ 147 (173)
T ss_pred cCCC--hHHHHHHHHHHHHHhc-----CcccchhHHhccHHHHHHHH
Confidence 9987 2223444555555555 23444555555444444433
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.012 Score=67.72 Aligned_cols=137 Identities=19% Similarity=0.179 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCCC--HHH--HH---HHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 181 ISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSF--VEE--AV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 181 ~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~~--~~v--r~---kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
.|+|-|+.=|..| +..|... |+|..|+.+|.-+. ..+ .. --|.-+|++|-.+.+-.+....++-+..|.
T Consensus 460 SALWNLSAHcteN---KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LL 536 (2195)
T KOG2122|consen 460 SALWNLSAHCTEN---KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLL 536 (2195)
T ss_pred HHHhhhhhccccc---chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHH
Confidence 3566555544444 3444443 89999999997552 222 22 457788999999888777888999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+.|++. +..+..++|..|+||.. -+++..+.+.+.|.+..|-+++++.+..+-+-+..+|.+|+...+
T Consensus 537 Q~LKS~--SLTiVSNaCGTLWNLSA-----R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 537 QHLKSH--SLTIVSNACGTLWNLSA-----RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHhhhc--ceEEeecchhhhhhhhc-----CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 999987 56789999999999995 578889999999999999999999999999999999999998753
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.014 Score=50.22 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=59.0
Q ss_pred CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 204 GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 204 g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
..+..|+++|.++. +.+..-|++=|+-++|++|.+.......||-..++.++.++ +..+|..|+.++.-|+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE--DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 36889999996544 44566799999999999999988888899999999999986 77899999999998874
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.18 Score=50.56 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhhccccccc-------ccCCCCChHHHHHHHHHHHHHhhCCh--HHHHH--HHhcCcHHHHHHhhcCCCH
Q 016423 150 SQRALQELLILVEPIDNAN-------GQLNHPDTDIRKISAWILGKASQNNP--LVQKQ--VLELGALSKLMKMVKSSFV 218 (390)
Q Consensus 150 ~~~aLd~Le~lve~IDnAn-------~lL~s~~~~vR~~Aa~vLgta~QNNp--~~Q~~--~le~g~l~~Ll~LL~s~~~ 218 (390)
.+..|+.|-.--+...-|. .-|.+++..|+..||.-||.+..|.. .+-.. +...|.++.++..+..++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 4455565555444444443 45788999999999999999998865 23332 4477899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHH-hcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCch
Q 016423 219 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI-LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 297 (390)
Q Consensus 219 ~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~l-L~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v 297 (390)
+|...|+-.|+.+.+- |.+.++....+-...+... |.-.+.++ .|.+...+|-.+.+ ..+.........|++
T Consensus 143 eVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndi-aRvRVleLIieifS-----iSpesaneckkSGLl 215 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDI-ARVRVLELIIEIFS-----ISPESANECKKSGLL 215 (524)
T ss_pred HHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhH-HHHHHHHHHHHHHh-----cCHHHHhHhhhhhHH
Confidence 9999999999998764 7777777766544333222 21121233 77888888888875 455556667778888
Q ss_pred HHHHHhhcC-CChhHHHHHHHHHHHHHh
Q 016423 298 KSVVDLTAS-ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 298 ~~Lv~lL~~-~d~~v~EkAL~aL~~L~~ 324 (390)
..|..-|+. .|.-++-.++..+..|+.
T Consensus 216 dlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 216 DLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 888777776 477777778777777775
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.01 Score=43.13 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 016423 219 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 275 (390)
Q Consensus 219 ~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L 275 (390)
.+|..|+++|+.+..+.+..... +....++.|..+|.++ +..+|..|++.|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 58999999999988887776665 4578899999999877 447899999999865
|
... |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.063 Score=57.60 Aligned_cols=107 Identities=12% Similarity=0.166 Sum_probs=92.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-hHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-~~~f~~~gG 247 (390)
++|..|+..|...+..+|.++|-.-...|..|+..|++..|+.++.+.+..+|.+++|+|-.+.-+...- +.++...=|
T Consensus 426 qll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~ 505 (678)
T KOG1293|consen 426 QLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIP 505 (678)
T ss_pred HHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhh
Confidence 6777788889999999999999998889999999999999999999988889999999999998886554 445555557
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
-..|..+..++ +..+|.-+..+++||+-
T Consensus 506 a~~i~~l~nd~--d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 506 ANLILDLINDP--DWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHHhhc
Confidence 77777777776 78899999999999984
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.62 Score=46.39 Aligned_cols=197 Identities=17% Similarity=0.110 Sum_probs=106.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhC---ChHHHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QN---Np~~Q~~~le~g~l~~Ll~LL~s~~--~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
+.++....+=+..|+.+++-++=. .....+ +++ ...|.|.+++.+.+ ..+|..+++||+-++--.........
T Consensus 93 k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e-i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~ 170 (309)
T PF05004_consen 93 KSLKKGKSEEQALAARALALLALTLGAGEDSEE-IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETE 170 (309)
T ss_pred HHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH-HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHH
Confidence 456655556667788888876433 344444 343 36888999888655 35677787777765432111111111
Q ss_pred -HcCcHH--HHHHHhcCCC--------hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHH
Q 016423 244 -VEAGDL--MLQDILGNSS--------FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 312 (390)
Q Consensus 244 -~~gGl~--~L~~lL~s~~--------~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~ 312 (390)
...-+. ....+.+.+. ++..+..-|+...+-|++. .++...... -...++.++.+|.++|.+||
T Consensus 171 ~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~----~~~~~~~~~-~~~~~~~l~~lL~s~d~~VR 245 (309)
T PF05004_consen 171 ELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTT----LPDSKLEDL-LEEALPALSELLDSDDVDVR 245 (309)
T ss_pred HHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhc----CCHHHHHHH-HHHHHHHHHHHhcCCCHHHH
Confidence 001111 1111122211 1345777777777766652 122111221 24568999999999999999
Q ss_pred HHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 016423 313 EKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKL 381 (390)
Q Consensus 313 EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~el~~~e~~~ey~~dl~~lr~e~~~~~~~~~ 381 (390)
-.|-.+|.-|.....++...+ ..+....|-.++++++.+- .-|... .=|++-...|++-+
T Consensus 246 iAAGEaiAll~E~~~~~~~~~-----~~~~~~~l~~~l~~La~dS--~K~~sK--kdrk~qRs~Frdil 305 (309)
T PF05004_consen 246 IAAGEAIALLYELARDHEEDF-----LYEDMEELLEQLRELATDS--SKSRSK--KDRKQQRSSFRDIL 305 (309)
T ss_pred HHHHHHHHHHHHHhhcccccc-----cccCHHHHHHHHHHHHHhc--cCccch--hHHHHHHHHHHHHH
Confidence 999999998887543222112 2223344555556665432 222222 13555666666654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.019 Score=38.51 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=33.4
Q ss_pred cchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 016423 237 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 237 ~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
.....+.+.||++.|+.+++++ +.+++..|+++|++|+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~--~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSE--DEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHc
Confidence 3567788999999999999965 6789999999999986
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.38 Score=52.66 Aligned_cols=195 Identities=14% Similarity=0.114 Sum_probs=123.2
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchH-HHHHcCcH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE-MFYVEAGD 248 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~-~f~~~gGl 248 (390)
-+++++=.-|..|+-+.|.+--.=...+-.-+..+++|.++.+..+++.-++..+-|+++-++.+.|.+.. ......-+
T Consensus 372 ~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l 451 (859)
T KOG1241|consen 372 NIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKL 451 (859)
T ss_pred hcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHH
Confidence 46778888899999999999777555666666678999999999966667788899999999988775433 33334556
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhc---CchHHHHHhhcC---CChhHHHHHHHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR---FFLKSVVDLTAS---ADLDLQEKALAAIKNL 322 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~---g~v~~Lv~lL~~---~d~~v~EkAL~aL~~L 322 (390)
++++.-|.+ .+++-.++||.+.+|+...-+.....-....... .++..|++.-.. .+..+|..|-.||..|
T Consensus 452 ~~l~~gL~D---ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl 528 (859)
T KOG1241|consen 452 SALLEGLND---EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL 528 (859)
T ss_pred HHHHHHhhh---CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 777777776 5889999999999999532111100000001111 233333333333 3578999999999999
Q ss_pred HhcChhHHHHHHhhCCcHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 016423 323 LQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEA 368 (390)
Q Consensus 323 ~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~el~~~e~~~ey~~dl~~ 368 (390)
+...++..-... ..-..-.+.+|.+-+.+-....++++-..||+.
T Consensus 529 Ik~st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs 573 (859)
T KOG1241|consen 529 IKNSTDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNELQS 573 (859)
T ss_pred HHcCcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHH
Confidence 987655222221 111234555565555522223334555555443
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.14 Score=46.30 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=94.5
Q ss_pred HHHHhcCcHHHHHHhhcCCCH------HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHH
Q 016423 198 KQVLELGALSKLMKMVKSSFV------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 271 (390)
Q Consensus 198 ~~~le~g~l~~Ll~LL~s~~~------~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~L 271 (390)
..|++.||++.|++++.+... +.-..+|.|+..|.-|.-- ........-+.-+...+..+..+..+...|+..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~v-sWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIV-SWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcC-chhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 458999999999999987652 4456778888887776432 233334444556666666554477889999999
Q ss_pred HHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChh
Q 016423 272 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 328 (390)
Q Consensus 272 Ls~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~ 328 (390)
|-+++. ..+.....+.+.=-++.|+.+|..++.++|-+|+..+-+|..-.++
T Consensus 84 LEs~Vl-----~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 84 LESIVL-----NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHh-----CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999994 4556677777788899999999999999999999999998875543
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.43 Score=48.79 Aligned_cols=175 Identities=17% Similarity=0.132 Sum_probs=121.8
Q ss_pred CCCCHHHHHHHHHHHHHhhccccccc-----------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH
Q 016423 143 STLSLEDSQRALQELLILVEPIDNAN-----------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 211 (390)
Q Consensus 143 ~~~s~e~~~~aLd~Le~lve~IDnAn-----------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~ 211 (390)
......||+.||.=...+++--+..+ .+..++++.+|..|...|+.++--|| +.+.++||+..|++
T Consensus 78 ~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~ 154 (371)
T PF14664_consen 78 DNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLR 154 (371)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHH
Confidence 34457899999988888876544443 45567899999999999999999999 55888999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCC-----ChhH--HHHHHHHHHHHHHhhhhhhcCC
Q 016423 212 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-----SFEI--RLHRKAVSLVGDLAKCQLENMH 284 (390)
Q Consensus 212 LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~-----~~d~--klr~KA~~LLs~L~~~~l~~~~ 284 (390)
.+-+.+-+.....+.++=-++ ++|.....+...-.++.+..-+.+. +++. ..-..+..+|..++.+ =
T Consensus 155 ~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs-----W 228 (371)
T PF14664_consen 155 ALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS-----W 228 (371)
T ss_pred HHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-----C
Confidence 998755455556666666555 4466555444334456666555433 1122 2445677888888752 2
Q ss_pred CCCchhhh-hcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 285 KVEPPLFR-DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 285 ~~~~~~l~-~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+...-.-. +...++.++..|..++.++++..+..+..+....
T Consensus 229 ~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 229 PGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred CceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 22221111 2257889999999999999999999999998764
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.23 Score=43.13 Aligned_cols=108 Identities=18% Similarity=0.098 Sum_probs=80.4
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChH-
Q 016423 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPL- 195 (390)
Q Consensus 117 L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~- 195 (390)
+.+|-.......|.+.+.+..+.++.......+-..+|-. -|.++++.++..|..+|-.++.|...
T Consensus 5 I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~k-------------rl~~~n~~vql~AL~lLd~~vkNcg~~ 71 (133)
T cd03561 5 IERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRK-------------KIKYGNPHVQLLALTLLELLVKNCGKP 71 (133)
T ss_pred HHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHhCChH
Confidence 3444443334567888888888888776565555554433 36788999999999999999999744
Q ss_pred HHHHHHhcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhhCCcc
Q 016423 196 VQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNLA 237 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~s~---~~~vr~kAL~ALSsLiR~~~~ 237 (390)
++..+.....+..|++++... +..|+.|++..|-+.-..++.
T Consensus 72 f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 72 FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 888888878888899999863 467999998888777655543
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.4 Score=52.54 Aligned_cols=178 Identities=10% Similarity=0.006 Sum_probs=114.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
+-|.++.|.....|+.|||.++-=.-..-.+ -+.|+.|+.....+.. .++..++-||+-+|.+-.|..-.-..+..
T Consensus 97 ~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~w---p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~i 173 (859)
T KOG1241|consen 97 RTLGSPEPRRPSSAAQCVAAIACIELPQNQW---PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDI 173 (859)
T ss_pred HHcCCCCCCccchHHHHHHHHHHhhCchhhC---HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHH
Confidence 5678899999999999999886431111000 1345666666665554 48899999999999996665333333445
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+..++.-.....++..+|.-|..+|.+=+.-. ...+......+-+++.+++.-+++|..++-+|+.||..|++.-=
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~----~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFT----KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHH----HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 56666666544456778888888888765421 11222223334555666778888999999999999999998532
Q ss_pred hHHHHHHhhCC-cHHHHHHHHHHHHHhh
Q 016423 328 TEALVLKDFCG-LDTALERLRQQLQEVM 354 (390)
Q Consensus 328 ~~r~~~~~~~g-L~~~L~~Lr~~l~el~ 354 (390)
+.-..+- ... +.-++..++++.++.+
T Consensus 250 ~~m~~yM-~~alfaitl~amks~~deVa 276 (859)
T KOG1241|consen 250 EFMEPYM-EQALFAITLAAMKSDNDEVA 276 (859)
T ss_pred HHHHHHH-HHHHHHHHHHHHcCCcHHHH
Confidence 1111111 111 3457788888888755
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.043 Score=59.71 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=97.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHH---HHHHHHHHHh---hCCccchHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV---KALYTVSSLI---RNNLAGQEMF 242 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~---kAL~ALSsLi---R~~~~a~~~f 242 (390)
..|+++++.+|.+|+..+|.++---..|++.-+=.-.--.|...|..+.+++.- +|++||-|.+ .-+||.
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi---- 881 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI---- 881 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh----
Confidence 468899999999999999998654333443221111113466777777777644 5566665554 223443
Q ss_pred HHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 243 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 243 ~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
.+-++-|..+|++. ..|++.+..-|+..++. ..++....=.=+-+|=-|+++|++.+..++..|.++++-+
T Consensus 882 --~dllPrltPILknr--heKVqen~IdLvg~Iad-----rgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 882 --KDLLPRLTPILKNR--HEKVQENCIDLVGTIAD-----RGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYI 952 (1172)
T ss_pred --hhhcccchHhhhhh--HHHHHHHHHHHHHHHHh-----cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34568888999987 68899999999999995 3444333222235666788888888888888888888777
Q ss_pred Hh
Q 016423 323 LQ 324 (390)
Q Consensus 323 ~~ 324 (390)
+.
T Consensus 953 ak 954 (1172)
T KOG0213|consen 953 AK 954 (1172)
T ss_pred HH
Confidence 65
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.16 Score=57.24 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=92.0
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 253 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~ 253 (390)
+++=|..||.+|+.++.|-+.-|+..++.+.|..-+..++++. +-+|--++-+|+-|=.+|+.++..-...+..+.|..
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 4689999999999999999999999999999999999999864 346778899999999999999988888999999999
Q ss_pred HhcCCChhHHHHHHHHHHHHHHhh
Q 016423 254 ILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 254 lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+|.++ .+.+|.-|+|+|..++.
T Consensus 650 ~LsD~--vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 650 LLSDP--VPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HhcCc--cHHHHHHHHHHHHHHhc
Confidence 99987 67899999999999996
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.87 Score=47.92 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=46.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH-HHHHHHHHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVS 229 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~-~vr~kAL~ALS 229 (390)
++....+++++..+...+-+..-. ...+...+..|.+|.|..++.+++- ....+.+|-+|
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S 412 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLS 412 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhc
Confidence 566789999999999999999544 5688889999999999999998753 23444444444
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.37 Score=41.98 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|-+......|.+.+.+..+.++.....+.+-..+|- +-|.++++.++..|..++.++++| .+
T Consensus 4 ~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~-------------krl~~~n~~v~l~AL~lLe~~vkNcg~ 70 (133)
T smart00288 4 LIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLK-------------KRLNNKNPHVALLALTLLDACVKNCGS 70 (133)
T ss_pred HHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHH-------------HHHcCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3444444434456777888888888776555555444432 235789999999999999999999 57
Q ss_pred HHHHHHHhcCcHHHHHHhhcCCCH-H-HHHHHHHHHHHHhhCC
Q 016423 195 LVQKQVLELGALSKLMKMVKSSFV-E-EAVKALYTVSSLIRNN 235 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s~~~-~-vr~kAL~ALSsLiR~~ 235 (390)
.++..+...+.+..|.++++.... + |+.|++..+.+-...+
T Consensus 71 ~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 71 KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 788889889999999999987642 3 8999988888776554
|
Unpublished observations. Domain of unknown function. |
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.32 Score=43.10 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=79.3
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC-hHH
Q 016423 118 KELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN-PLV 196 (390)
Q Consensus 118 ~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN-p~~ 196 (390)
.+|=.......|...+-+..+.++.....+.+-..++-. -|.+.++.++..|..+|-++++|. +.+
T Consensus 6 ekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~K-------------Rl~~~n~~v~l~AL~LLe~~vkNCG~~f 72 (144)
T cd03568 6 EKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMK-------------RLNHKDPNVQLRALTLLDACAENCGKRF 72 (144)
T ss_pred HHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 333333333457778888888888766556555544432 247789999999999999999995 468
Q ss_pred HHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCc
Q 016423 197 QKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~ 236 (390)
+..+.....+..|+++++. .+..|+.|.+.-|-.....++
T Consensus 73 h~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 73 HQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 8888888999999999988 567899999888887766554
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.13 Score=53.16 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=85.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
..|.++++.||..++..||.+ + ..++.+.|+.+|+++++.+|..++.+++. |+. .-.
T Consensus 93 ~~L~d~~~~vr~aaa~ALg~i-~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~--r~~----------~~~ 149 (410)
T TIGR02270 93 AVLQAGPEGLCAGIQAALGWL-G----------GRQAEPWLEPLLAASEPPGRAIGLAALGA--HRH----------DPG 149 (410)
T ss_pred HHhcCCCHHHHHHHHHHHhcC-C----------chHHHHHHHHHhcCCChHHHHHHHHHHHh--hcc----------ChH
Confidence 567778888999999999965 1 12467889999998888888877766655 221 123
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
+.+..+|++. +..++..|+..|.+|-. ...++.|...+.+.|..|+..|+.++..+
T Consensus 150 ~~L~~~L~d~--d~~Vra~A~raLG~l~~----------------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 150 PALEAALTHE--DALVRAAALRALGELPR----------------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHhhcc----------------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 4678888865 78899999999998852 35566677889999999999999888665
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.29 Score=52.66 Aligned_cols=141 Identities=18% Similarity=0.132 Sum_probs=92.2
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHH--HHHHHhcCcHHHHHHhhcCCCHHHHH---HHHHHHHHHhhCC---ccchH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLV--QKQVLELGALSKLMKMVKSSFVEEAV---KALYTVSSLIRNN---LAGQE 240 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~--Q~~~le~g~l~~Ll~LL~s~~~~vr~---kAL~ALSsLiR~~---~~a~~ 240 (390)
.+|+|+.+.+|.+|+..+|.++.-=..| -..+.++| ..|...|..+.+++.- +|+++|-|..|-. ||.
T Consensus 611 ~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi-- 686 (975)
T COG5181 611 KLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPI-- 686 (975)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCch--
Confidence 6789999999999999999884321101 11122222 2244555666666644 5666665554432 222
Q ss_pred HHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHH
Q 016423 241 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 320 (390)
Q Consensus 241 ~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~ 320 (390)
.|-++.|..+|.+. ..|++.++..++.-++. ..++....=.=+-+|=-|+++|.+.+..++..|..+++
T Consensus 687 ----~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~-----~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 687 ----SGILPSLTPILRNK--HQKVVANTIALVGTICM-----NSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred ----hhccccccHhhhhh--hHHHhhhHHHHHHHHHh-----cCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 45678899999987 67899999999999985 33443322222356667888888888888888887777
Q ss_pred HHHh
Q 016423 321 NLLQ 324 (390)
Q Consensus 321 ~L~~ 324 (390)
.+..
T Consensus 756 ~Is~ 759 (975)
T COG5181 756 CISR 759 (975)
T ss_pred hHHh
Confidence 6664
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.29 Score=43.19 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC-h
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN-P 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN-p 194 (390)
++.+|-+......|...+-+..+.++.....+.+-..++. +-|++.++.+.-.|..+|-++++|. +
T Consensus 5 ~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~-------------krl~~~n~~v~l~AL~LLe~~vkNCG~ 71 (139)
T cd03567 5 WLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLA-------------HKIQSPQEKEALQALTVLEACMKNCGE 71 (139)
T ss_pred HHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHH-------------HHHcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 3444444444556778888888888765544443333322 2357899999999999999999994 7
Q ss_pred HHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhCC
Q 016423 195 LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s------~~~~vr~kAL~ALSsLiR~~ 235 (390)
.++..+...+.+..|+++++. .+..|+.|.+.-|=.--..+
T Consensus 72 ~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 72 RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999963 34678888887766655444
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.45 Score=42.03 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=77.3
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-ChHH
Q 016423 118 KELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NPLV 196 (390)
Q Consensus 118 ~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np~~ 196 (390)
.+|-.......|...+.+..+.++.....+.+-..++- +-|.+.++.++..|..+|-++++| .+.+
T Consensus 10 ~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~-------------krl~~~n~~vql~AL~LLe~~vkNCG~~f 76 (142)
T cd03569 10 EKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALK-------------KRLLSKNPNVQLYALLLLESCVKNCGTHF 76 (142)
T ss_pred HHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHH-------------HHHcCCChHHHHHHHHHHHHHHHHCCHHH
Confidence 33333333445677788888888765544444443332 235789999999999999999999 5778
Q ss_pred HHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCc
Q 016423 197 QKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~ 236 (390)
+..+...+.+..|++++.. .+..|+.|++..|-+-...++
T Consensus 77 h~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 77 HDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 8889999999999999975 346789999888877655543
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.1 Score=47.06 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=78.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-hHHHHHcCcHHHHHHHhcCC-------ChhHHHHHHHHHHHHHHhh
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGNS-------SFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-~~~f~~~gGl~~L~~lL~s~-------~~d~klr~KA~~LLs~L~~ 277 (390)
...+++.+.+.+. ..+.+..|.-.+|.++.. ...|+..||+..|..+|..- ..+..+...++..|..|+.
T Consensus 68 p~~~i~~L~~~~~--~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 68 PEWYIKKLKSRPS--TSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHTTT----HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCc--cHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 4456666665432 228888899999997765 78999999999999998521 1345678888999999883
Q ss_pred hhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 278 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 278 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
........+...+++..++..|.+++..++..|+..|..+.
T Consensus 146 -----~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 -----TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp -----SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 22223344556899999999999999999999998887653
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.28 Score=44.59 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 254 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~l 254 (390)
++.||..+.-++|.++...|..=+. .+|.+...|.++++.||..|+..|+-|+.+..--.+ ...+..+..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence 5789999999999999887754433 589999999999999999999999999876322111 1122566677
Q ss_pred hcCCChhHHHHHHHHHHHHHHhh
Q 016423 255 LGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 255 L~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+.++ ++.++.-|..++..+..
T Consensus 72 l~D~--~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 72 LVDE--NPEIRSLARSFFSELLK 92 (178)
T ss_pred HcCC--CHHHHHHHHHHHHHHHH
Confidence 7765 67799999999999985
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.66 Score=47.43 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=111.4
Q ss_pred HHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHH
Q 016423 184 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIR 263 (390)
Q Consensus 184 ~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~k 263 (390)
.-+-.+.+.+|..+....-.-.++.+..++-+++.++|..+...+-=++.+ +.....+...+.-..++..|..++...-
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 345566678887777766555667777655555578888888888777766 5567888888988888888875432222
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHH
Q 016423 264 LHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTAL 343 (390)
Q Consensus 264 lr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L 343 (390)
=|..|..+++.++.-. .++. ....|+++.++.+..+.+..++..++.+|..|+-. +++.+...+|+..++
T Consensus 84 ER~QALkliR~~l~~~---~~~~----~~~~~vvralvaiae~~~D~lr~~cletL~El~l~---~P~lv~~~gG~~~L~ 153 (371)
T PF14664_consen 84 EREQALKLIRAFLEIK---KGPK----EIPRGVVRALVAIAEHEDDRLRRICLETLCELALL---NPELVAECGGIRVLL 153 (371)
T ss_pred HHHHHHHHHHHHHHhc---CCcc----cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh---CHHHHHHcCCHHHHH
Confidence 3678999999998510 1111 23779999999999999999999999999999875 345555467777666
Q ss_pred HHHHH
Q 016423 344 ERLRQ 348 (390)
Q Consensus 344 ~~Lr~ 348 (390)
..+-+
T Consensus 154 ~~l~d 158 (371)
T PF14664_consen 154 RALID 158 (371)
T ss_pred HHHHh
Confidence 66654
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.88 Score=46.67 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc-CC---CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 250 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~-s~---~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~ 250 (390)
.+.|=..|+.++.+...|.|.+...+.+.|.++.++.-+. .. +.++-...-.+|+++|=| ..+++.|.+.+-+..
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~ 200 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDK 200 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHH
Confidence 4678889999999999999999999999999999999998 33 234555556777777766 677899999999999
Q ss_pred HHHHhcCC
Q 016423 251 LQDILGNS 258 (390)
Q Consensus 251 L~~lL~s~ 258 (390)
+.+++.++
T Consensus 201 ~f~if~s~ 208 (379)
T PF06025_consen 201 LFEIFTSP 208 (379)
T ss_pred HHHHhCCH
Confidence 99998875
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.3 Score=45.09 Aligned_cols=144 Identities=13% Similarity=0.059 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhhC-ChHHHHH----HH------hcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHH
Q 016423 177 DIRKISAWILGKASQN-NPLVQKQ----VL------ELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 177 ~vR~~Aa~vLgta~QN-Np~~Q~~----~l------e~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~ 244 (390)
.||..|..+|++++++ +++.=-. ++ ..+.-+.|+..+-.| +..+|..|+.+++.|+.+..+-.....+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3799999999999999 5442111 10 122445566665444 4679999999999999886442222211
Q ss_pred cC-------------------cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCC-CchhhhhcCchHHHHHhh
Q 016423 245 EA-------------------GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRDRFFLKSVVDLT 304 (390)
Q Consensus 245 ~g-------------------Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~-~~~~l~~~g~v~~Lv~lL 304 (390)
.+ -...|..+|+..+ +..+....+..+..|++. ...+ ....+. ..++..+-.++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~----tPY~rL~~~ll-~~~v~~v~~~l 154 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQA----TPYHRLPPGLL-TEVVTQVRPLL 154 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHcc----CChhhcCHhHH-HHHHHHHHHHH
Confidence 11 1344555666543 444666777777777751 2222 222222 24455566677
Q ss_pred cCCChhHHHHHHHHHHHHHhcC
Q 016423 305 ASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 305 ~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+.|++++..++.+++.|+...
T Consensus 155 ~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 155 RHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred hcCCCcHHHHHHHHHHHHHcCC
Confidence 8889999999999999998753
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.62 Score=43.32 Aligned_cols=141 Identities=15% Similarity=0.069 Sum_probs=88.3
Q ss_pred CCCChHHHHHHHHHHHHHhhCC--hHHHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 172 NHPDTDIRKISAWILGKASQNN--PLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNN--p~~Q~~~le~--g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
++.+=+.|..|..-|-.++..| ......+.+. ..++.++..+++....+...|+..++.+.++.......+ ...-
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 4556678899999999988888 2233333332 455667777765555678899999999998866665555 2445
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCc-hHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF-LKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~-v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
++.|...+.++ ..-++..|..+|..++.. .+ ....+ ...+...+.+.++.++..++..+..++...
T Consensus 96 l~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~-----~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 96 LPPLLKKLGDS--KKFIREAANNALDAIIES-----CS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHHGGG-----HHHHHHHHHHHHHHHTT-----S-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHccc--cHHHHHHHHHHHHHHHHH-----CC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 67888888876 345788888999999841 11 01233 566677778889999999999999998753
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.058 Score=34.90 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhC
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRN 234 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~ 234 (390)
.+|.+++++++++..||..|+++|+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 379999999999999999999999999876
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.1 Score=46.10 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHhhCChHH-------------HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHH
Q 016423 176 TDIRKISAWILGKASQNNPLV-------------QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 242 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~-------------Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f 242 (390)
+++...||..++.++...+.+ +++|+.. .+|+|++-..+.+.+.+...+.|||.+++|-|...-.-
T Consensus 283 ~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~ 361 (415)
T PF12460_consen 283 PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP 361 (415)
T ss_pred hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH
Confidence 778889999999988884444 5555544 59999999988777788899999999999877654333
Q ss_pred HHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 243 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 243 ~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.-..-+++|.+.|..+ +..++.-++..+..++.
T Consensus 362 ~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 362 ELPTLLPLLLQSLSLP--DADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 3345689999999876 55688899999999985
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.71 Score=51.09 Aligned_cols=131 Identities=19% Similarity=0.223 Sum_probs=98.7
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
+.+.++|..-=--+=..++.+| +...+ +++.+.+=+.++++.+|..|+..+|.+ |- .++. ..-+..+.
T Consensus 66 trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l-~~-----~el~-~~~~~~ik 133 (757)
T COG5096 66 TRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQDPNEEIRGFALRTLSLL-RV-----KELL-GNIIDPIK 133 (757)
T ss_pred hcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhccCCCHHHHHHHHHHHHhc-Ch-----HHHH-HHHHHHHH
Confidence 5567777777777777788888 44444 466777778888888999999999887 22 2221 23467888
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+++.++ ...+|++|+.++..+.+ -++ ..+.+.|.+..+..++...|+.+.-.|+.+|..+-..
T Consensus 134 ~~l~d~--~ayVRk~Aalav~kly~-----ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 134 KLLTDP--HAYVRKTAALAVAKLYR-----LDK---DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHccCC--cHHHHHHHHHHHHHHHh-----cCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 999887 56899999999999984 232 3455778999999999999999999999888887653
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.9 Score=44.22 Aligned_cols=184 Identities=14% Similarity=0.090 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHhhccccccc---------------------ccCCCCC--hH--HHH-HHHHHHHHHhhCChHHHHH
Q 016423 146 SLEDSQRALQELLILVEPIDNAN---------------------GQLNHPD--TD--IRK-ISAWILGKASQNNPLVQKQ 199 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnAn---------------------~lL~s~~--~~--vR~-~Aa~vLgta~QNNp~~Q~~ 199 (390)
.++.|+.||.+|..--|.+++-. ..|+.++ +. -|. .|..++-.+++ +|+.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 45778888888887777765432 4555432 22 222 23333334444 8999999
Q ss_pred HHhcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhCCccchHHH-HHcCcHHHHHHHhcCCChhHHHHHHHHHHHH
Q 016423 200 VLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMF-YVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 273 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~-----~~vr~kAL~ALSsLiR~~~~a~~~f-~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs 273 (390)
|++.+..--|...|+..+ +-+|..++.-|+++++...+-.-.| ....-++...+++... +.--|.-|.|.+.
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--selSKtvAtfIlq 164 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SELSKTVATFILQ 164 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 999997666777776554 2478999999999999765554455 4556678888888765 4456888999999
Q ss_pred HHhhhh--hhcCCCCCchhh-hhcCchHHHH-HhhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 274 DLAKCQ--LENMHKVEPPLF-RDRFFLKSVV-DLTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 274 ~L~~~~--l~~~~~~~~~~l-~~~g~v~~Lv-~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
.++... +.... ...+.| .=..++..++ .+...++..+..++.+|-..|.... ..+..++
T Consensus 165 KIL~dd~GL~yiC-~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-rar~aL~ 227 (262)
T PF04078_consen 165 KILLDDVGLNYIC-QTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-RAREALR 227 (262)
T ss_dssp HHHHSHHHHHHHT-SSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-THHHHHH
T ss_pred HHHcchhHHHHHh-cCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-HHHHHHH
Confidence 998632 11000 111222 1123333333 3445568899999999999988754 4454444
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.64 Score=45.22 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchH
Q 016423 219 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 298 (390)
Q Consensus 219 ~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~ 298 (390)
.+...|+..|-.+|=-||+.+..|....++.+|+++|... .++.++..++-+|-.++- .++.....|.+.+-+.
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~-~~~~i~~a~L~tLv~iLl-----d~p~N~r~FE~~~Gl~ 179 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS-NPPAIQSACLDTLVCILL-----DSPENQRDFEELNGLS 179 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC-CCchHHHHHHHHHHHHHH-----cChHHHHHHHHhCCHH
Confidence 3566788899999999999999999999999999999543 256788888887777774 4677777899999999
Q ss_pred HHHHhhcCC--ChhHHHHHHHHHHHHHhc
Q 016423 299 SVVDLTASA--DLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 299 ~Lv~lL~~~--d~~v~EkAL~aL~~L~~~ 325 (390)
.++.++++. +.+++-|++..|.-.+..
T Consensus 180 ~v~~llk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 180 TVCSLLKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HHHHHHccccccHHHhHHHHHHHHHHHcc
Confidence 999999875 778999999988877754
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.62 Score=48.81 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=117.7
Q ss_pred ccCCCCCh--HHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHc
Q 016423 169 GQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVE 245 (390)
Q Consensus 169 ~lL~s~~~--~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~ 245 (390)
+++.+++- .||..|+.+|-.+... ...+.+...| +..++.+.+.. +.+.+.-.+.-|..+.+|.......++..
T Consensus 187 rmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa 263 (832)
T KOG3678|consen 187 RMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAA 263 (832)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Confidence 45555554 5799999999877543 2466677666 77777777543 35678888899999999998888999999
Q ss_pred CcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 246 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
||+..++--.... ++.+.+.++..|.+.+- ...-..+..+++..+..-|..+-.+.|.-++-+|..|+..|++.
T Consensus 264 ~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L----~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 264 GGLDAVLYWCRRT--DPALLRHCALALGNCAL----HGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred cccchheeecccC--CHHHHHHHHHHhhhhhh----hchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 9998887777654 57788899888888874 23445566677777777788877777888999999999999987
Q ss_pred ChhHHHHHH
Q 016423 326 RTTEALVLK 334 (390)
Q Consensus 326 ~~~~r~~~~ 334 (390)
.+-.| ..+
T Consensus 338 KE~E~-~Vr 345 (832)
T KOG3678|consen 338 KEVER-EVR 345 (832)
T ss_pred hhhhH-HHh
Confidence 54444 344
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.36 Score=50.49 Aligned_cols=126 Identities=16% Similarity=0.076 Sum_probs=87.4
Q ss_pred hHHHHHHHhcCcHHHHHHhh---------c-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCC-----
Q 016423 194 PLVQKQVLELGALSKLMKMV---------K-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS----- 258 (390)
Q Consensus 194 p~~Q~~~le~g~l~~Ll~LL---------~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~----- 258 (390)
|..-+.++...++..|+++. . ..+..+..-|+-+|+|++-+++.++..|.+.|+...+...|+..
T Consensus 12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~ 91 (446)
T PF10165_consen 12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ 91 (446)
T ss_pred cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence 33444444445566676666 2 23457899999999999999999999999999999999999754
Q ss_pred -ChhHHHHHHHHHHHHHHhhhhhhcCCCCCch-hhhhcCchHHHHHhhcC-----------------CChhHHHHHHHHH
Q 016423 259 -SFEIRLHRKAVSLVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTAS-----------------ADLDLQEKALAAI 319 (390)
Q Consensus 259 -~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~-~l~~~g~v~~Lv~lL~~-----------------~d~~v~EkAL~aL 319 (390)
.+..-+-.|.+|+++++.. +.+. .+.+++.+..++..|.. .+......+|..+
T Consensus 92 ~~d~~Fl~~RLLFLlTa~~~--------~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKll 163 (446)
T PF10165_consen 92 PSDVEFLDSRLLFLLTALRP--------DDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLL 163 (446)
T ss_pred ChhHHHHHHHHHHHHhcCCh--------hHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHH
Confidence 3445567788888887652 3333 34455677777665511 1445667778888
Q ss_pred HHHHhcCh
Q 016423 320 KNLLQLRT 327 (390)
Q Consensus 320 ~~L~~~~~ 327 (390)
.++..+.+
T Consensus 164 FNit~~~~ 171 (446)
T PF10165_consen 164 FNITLHYP 171 (446)
T ss_pred HHhhhccC
Confidence 88876644
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.54 Score=50.99 Aligned_cols=145 Identities=13% Similarity=0.129 Sum_probs=97.9
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC---
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA--- 246 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g--- 246 (390)
.|...++-||...--+|.|+++.. ..|.+ ..++|.|..+|.+.+-....-|+.||+-+|-+...-.+.=....
T Consensus 98 ~lgd~~~lIr~tvGivITTI~s~~-~~~~w---pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~ 173 (885)
T KOG2023|consen 98 GLGDASPLIRATVGIVITTIASTG-GLQHW---PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN 173 (885)
T ss_pred hccCchHHHHhhhhheeeeeeccc-ccccc---hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchH
Confidence 344566677777777777775553 34554 45799999999988767788999999999987554322111111
Q ss_pred -cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 247 -GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 247 -Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
-++-+.++++++ ++++|..|++.+...+.- .. ..-.+.-..++..+..+-...++.||..+.+++.-|+..
T Consensus 174 ~mipkfl~f~~h~--spkiRs~A~~cvNq~i~~-----~~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 174 IMIPKFLQFFKHP--SPKIRSHAVGCVNQFIII-----QT-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred HhHHHHHHHHhCC--ChhHHHHHHhhhhheeec-----Cc-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 245666677776 788999999999887741 11 111122245666777777677888999998888888875
Q ss_pred C
Q 016423 326 R 326 (390)
Q Consensus 326 ~ 326 (390)
.
T Consensus 246 r 246 (885)
T KOG2023|consen 246 R 246 (885)
T ss_pred c
Confidence 4
|
|
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.77 Score=40.19 Aligned_cols=106 Identities=22% Similarity=0.230 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC-h
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN-P 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN-p 194 (390)
++.+|-.......|...+.+..+.++.......+-..+ |. +-|.+.++.++..|..++-++++|. +
T Consensus 9 li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~---l~----------krl~~~~~~vq~~aL~lld~lvkNcg~ 75 (140)
T PF00790_consen 9 LIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARA---LR----------KRLKHGNPNVQLLALTLLDALVKNCGP 75 (140)
T ss_dssp HHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHH---HH----------HHHTTSSHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHH---HH----------HHHhCCCHHHHHHHHHHHHHHHHcCCH
Confidence 34444444334445666666666666653333333322 22 2457899999999999999999996 7
Q ss_pred HHHHHHHhcCcHHHHHHhhcCCC-HH---HHHHHHHHHHHHhhC
Q 016423 195 LVQKQVLELGALSKLMKMVKSSF-VE---EAVKALYTVSSLIRN 234 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s~~-~~---vr~kAL~ALSsLiR~ 234 (390)
.++..+.....+..|.+++.+.. .. |+.|++--|..--..
T Consensus 76 ~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 76 RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 88888888889999999987654 33 888888777665443
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.49 Score=45.56 Aligned_cols=147 Identities=21% Similarity=0.286 Sum_probs=83.1
Q ss_pred cccCCcCCCC--CCChHHHHHhHhhcCCCCCcc-ccccccCCCCHHHHHHhHHHHHHHHHHcCCC-ChHHHHHHHHHHHh
Q 016423 66 VNDHDELDGG--FSSIDGMLQWAIGHSDPAKLK-ETAQDVQRLSPSELKKRQMEIKELMEKLKTP-SDAQLIQIAIDDLN 141 (390)
Q Consensus 66 ~~~~~~~~~~--~~~~~gLLkwsi~~s~~~~~~-~~~~~~~~~s~e~l~~r~~~L~eal~~~~~~-~d~~~Mk~~l~~l~ 141 (390)
..|-.++|-. .|-++|||+|++--+.....+ .+..+..++||..+. =|+|-++.+. .-+++ ++.
T Consensus 96 qLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrla------LEaLcKLsV~e~NVDl------iLa 163 (257)
T PF12031_consen 96 QLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLA------LEALCKLSVIENNVDL------ILA 163 (257)
T ss_pred eeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHH------HHHHHHhheeccCcce------eee
Confidence 3445666655 477999999999744332210 022345679996432 3455555431 11110 011
Q ss_pred cCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHH-HHHHHhcCcHHHHHHhhcCCCHH-
Q 016423 142 NSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLV-QKQVLELGALSKLMKMVKSSFVE- 219 (390)
Q Consensus 142 ~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~-Q~~~le~g~l~~Ll~LL~s~~~~- 219 (390)
.+. -...+..+..|-.++. ..+++-.|+-|.-+|.+++|..... +....+.+++..|+..+......
T Consensus 164 Tpp--~sRlE~l~~~L~r~l~---------~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 164 TPP--FSRLERLFHTLVRLLG---------MREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNA 232 (257)
T ss_pred CCC--HHHHHHHHHHHHHHhc---------cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 111 1112222233333221 3578889999999999999996554 46677789999999999754332
Q ss_pred HHHHHHHHHHHHhhCCcc
Q 016423 220 EAVKALYTVSSLIRNNLA 237 (390)
Q Consensus 220 vr~kAL~ALSsLiR~~~~ 237 (390)
....--+-+.. |+||+
T Consensus 233 ~~~~~q~g~~~--~~np~ 248 (257)
T PF12031_consen 233 HQVASQHGMQA--RDNPE 248 (257)
T ss_pred HHHHhhhhhhc--ccCcc
Confidence 23333333444 66654
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=93.29 E-value=2.8 Score=43.50 Aligned_cols=89 Identities=19% Similarity=0.014 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc-cccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSK 208 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~-IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~ 208 (390)
.+.....+..+.+. .+.-+..++.-+...-++ ..-...+|+++++.||..|+.+||.+-.- ..+|.
T Consensus 116 ~~a~~~L~~~L~~~--~p~vR~aal~al~~r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~ 182 (410)
T TIGR02270 116 RQAEPWLEPLLAAS--EPPGRAIGLAALGAHRHDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSEST 182 (410)
T ss_pred hHHHHHHHHHhcCC--ChHHHHHHHHHHHhhccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHH
Confidence 34444444555433 333444555444443222 11112677788888888888888887332 35777
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHH
Q 016423 209 LMKMVKSSFVEEAVKALYTVSSL 231 (390)
Q Consensus 209 Ll~LL~s~~~~vr~kAL~ALSsL 231 (390)
|...+.+.++.||..|+.+++-+
T Consensus 183 L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 183 LRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHc
Confidence 88888888888888888887544
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.21 E-value=5 Score=43.08 Aligned_cols=101 Identities=15% Similarity=0.079 Sum_probs=79.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc-cchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~-~a~~~f~~~gG 247 (390)
++|.++..+-|..+..-|..+ +++-..|-.+.....++.|++-|++.++.|..+++.-++++|.... ++...|.
T Consensus 343 ~~l~~~~~~tri~~L~Wi~~l-~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl---- 417 (675)
T KOG0212|consen 343 KYLSDDREETRIAVLNWIILL-YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFL---- 417 (675)
T ss_pred HHhhcchHHHHHHHHHHHHHH-HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHH----
Confidence 789999999999999999999 5555578878888999999999999999999999999999998743 3444442
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.-|.+.+..+ ..-+..++.+.++.||.
T Consensus 418 -~sLL~~f~e~--~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 418 -LSLLEMFKED--TKLLEVRGNLIIRQLCL 444 (675)
T ss_pred -HHHHHHHhhh--hHHHHhhhhHHHHHHHH
Confidence 2344444444 45578899999999985
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.47 Score=42.18 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=98.8
Q ss_pred CcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc
Q 016423 204 GALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 282 (390)
Q Consensus 204 g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~ 282 (390)
+.+..|+.-.... +.+.+...+--|.|..-+ |.+.....+.+.+.+.+..|..+ +..+..-+..-|+++|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~--ne~LvefgIgglCNlC------ 86 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQ--NELLVEFGIGGLCNLC------ 86 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcc--cHHHHHHhHHHHHhhc------
Confidence 4566677666654 456677788778887655 77888999999999999999987 7789999999999999
Q ss_pred CCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHHh
Q 016423 283 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV 353 (390)
Q Consensus 283 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~el 353 (390)
.++...+.+++.+-++.++..++++.....-.++.++.-|.-.+...|..+ +.+.+-++-+.+.+.
T Consensus 87 ~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~el-----l~p~Vv~~v~r~~~s 152 (173)
T KOG4646|consen 87 LDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDEL-----LSPAVVRTVQRWRES 152 (173)
T ss_pred cChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHh-----ccHHHHHHHHHHHHH
Confidence 477778889999999999999999876666666666655554333333322 344445555555543
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.93 Score=41.15 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCch
Q 016423 218 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 297 (390)
Q Consensus 218 ~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v 297 (390)
+.+|..++-+++-|+..+|...+.+ .+.+...|.++ ++.+|+.|+..|++|+.+ + .+.-.|-+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~-----~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~-----d-----~ik~k~~l 64 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPY-----LPNLYKCLRDE--DPLVRKTALLVLSHLILE-----D-----MIKVKGQL 64 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhH-----HHHHHHHHCCC--CHHHHHHHHHHHHHHHHc-----C-----ceeehhhh
Confidence 4689999999999999888766555 57888999987 678999999999999952 1 11112333
Q ss_pred -HHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 298 -KSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 298 -~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..++.++..+|.+++..|..++..+...
T Consensus 65 ~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 65 FSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 6777888888999999999999998874
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.68 Score=49.20 Aligned_cols=154 Identities=11% Similarity=0.124 Sum_probs=112.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-hHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-~~~f~~~gG 247 (390)
+.|+.|+.-|...+...+++.+=-=...|..|++.|.|..|+.++.+.+..++.+.+|.+--++-|+... +-+|....|
T Consensus 438 ~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig 517 (743)
T COG5369 438 DALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIG 517 (743)
T ss_pred HHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcC
Confidence 4555555556666777777766665568999999999999999999888889999999999999887765 447888999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcC----chHHHHHhhcCC-ChhHHHHHHHHHHHH
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF----FLKSVVDLTASA-DLDLQEKALAAIKNL 322 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g----~v~~Lv~lL~~~-d~~v~EkAL~aL~~L 322 (390)
.+.++....++ +-+++.....++.+++-.. .-+++.++.+.+.. +.+.+++-+... ..++++..-..+...
T Consensus 518 ~~kvl~~~NDp--c~~vq~q~lQilrNftc~~--~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~a 593 (743)
T COG5369 518 VEKVLSYTNDP--CFKVQHQVLQILRNFTCDT--SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNA 593 (743)
T ss_pred HHHHHHHhcCc--ccccHHHHHHHHHhccccc--ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Confidence 99999999887 6889999999999997410 01244444444332 444555555555 456677766656665
Q ss_pred HhcC
Q 016423 323 LQLR 326 (390)
Q Consensus 323 ~~~~ 326 (390)
++++
T Consensus 594 a~d~ 597 (743)
T COG5369 594 ACDD 597 (743)
T ss_pred hccc
Confidence 5544
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=92.98 E-value=3.3 Score=44.54 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHH
Q 016423 113 RQMEIKELMEKLKTPSDAQLIQIAIDDL----NNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGK 188 (390)
Q Consensus 113 r~~~L~eal~~~~~~~d~~~Mk~~l~~l----~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgt 188 (390)
+.+..+..|+..++. ..+|+....+ -.. =++-...|++.+.+|||+ ++..||.+|..-|-.
T Consensus 21 ~~~~y~~il~~~kg~---~k~K~Laaq~I~kffk~--FP~l~~~Ai~a~~DLcED----------ed~~iR~~aik~lp~ 85 (556)
T PF05918_consen 21 HEEDYKEILDGVKGS---PKEKRLAAQFIPKFFKH--FPDLQEEAINAQLDLCED----------EDVQIRKQAIKGLPQ 85 (556)
T ss_dssp GHHHHHHHHHGGGS----HHHHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHT-----------SSHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHccCC---HHHHHHHHHHHHHHHhh--ChhhHHHHHHHHHHHHhc----------ccHHHHHHHHHhHHH
Confidence 455667777765552 2244433332 221 245566789999999987 568999999999999
Q ss_pred HhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHH
Q 016423 189 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 268 (390)
Q Consensus 189 a~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA 268 (390)
+|.+||..-.. +...|++||.+++......+=.+|.++++..|.+.-. .++.+++..+..+..+|.++
T Consensus 86 ~ck~~~~~v~k-----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~-------~lf~~i~~~~~~de~~Re~~ 153 (556)
T PF05918_consen 86 LCKDNPEHVSK-----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT-------GLFSQIESSKSGDEQVRERA 153 (556)
T ss_dssp G--T--T-HHH-----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHH---HS-HHHHHHH
T ss_pred HHHhHHHHHhH-----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH-------HHHHHHHhcccCchHHHHHH
Confidence 99998754433 4668999999988777777778888888877764221 12333332222355689999
Q ss_pred HHHHHHHh
Q 016423 269 VSLVGDLA 276 (390)
Q Consensus 269 ~~LLs~L~ 276 (390)
+.+|..=+
T Consensus 154 lkFl~~kl 161 (556)
T PF05918_consen 154 LKFLREKL 161 (556)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHH
Confidence 87765444
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.3 Score=45.65 Aligned_cols=143 Identities=14% Similarity=0.111 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCc------------------
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNL------------------ 236 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~------------------ 236 (390)
-.++=+.+.|+=-+.-|-+.+ +.+...+.|+.|..+++++.. .|-+=.+..+-+++-..|
T Consensus 214 ~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~ 292 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVL 292 (442)
T ss_pred hhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCch
Confidence 345556777777776665544 556777899999999986542 233334444444443332
Q ss_pred --------------------------------------------------------------cchHHHHHcC--cHHHHH
Q 016423 237 --------------------------------------------------------------AGQEMFYVEA--GDLMLQ 252 (390)
Q Consensus 237 --------------------------------------------------------------~a~~~f~~~g--Gl~~L~ 252 (390)
.+...|.+.+ -+.+|+
T Consensus 293 k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~ 372 (442)
T KOG2759|consen 293 KTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILI 372 (442)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHH
Confidence 1233343332 355666
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.+|..++ |+.+..=||+=|...+. ..|..+..+.+.|.-..++++++++|++|+-+|+.|+..|..+
T Consensus 373 ~lLe~s~-Dp~iL~VAc~DIge~Vr-----~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 373 KLLETSN-DPIILCVACHDIGEYVR-----HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHhcCC-CCceeehhhhhHHHHHH-----hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 6666543 44455556666666663 4677888899999999999999999999999999999998864
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.87 E-value=4.5 Score=45.81 Aligned_cols=216 Identities=17% Similarity=0.162 Sum_probs=121.9
Q ss_pred ccCCCCHHHHHHhHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHH---HHH-------HHHHHHhhccc-cc---
Q 016423 101 DVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDS---QRA-------LQELLILVEPI-DN--- 166 (390)
Q Consensus 101 ~~~~~s~e~l~~r~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~---~~a-------Ld~Le~lve~I-Dn--- 166 (390)
+.+-|--.|| |.+|++..-.+..+++++.++-.++.|.+..-.+.+. -.+ =+.++++||++ +|
T Consensus 20 DfRfMAtsDL---m~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s 96 (1233)
T KOG1824|consen 20 DFRFMATSDL---MTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLS 96 (1233)
T ss_pred chhhhhHHHH---HHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhcc
Confidence 4566655554 5667766544455677788888888888765332211 111 13355555543 22
Q ss_pred -----------------cc----------------------ccC--CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCc
Q 016423 167 -----------------AN----------------------GQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLELGA 205 (390)
Q Consensus 167 -----------------An----------------------~lL--~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~ 205 (390)
|| +.+ ..+...|+..++.+++.+.++--..--. +..+.
T Consensus 97 ~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~i 175 (1233)
T KOG1824|consen 97 GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSI 175 (1233)
T ss_pred chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHH
Confidence 11 011 1233346777777777776653222111 22234
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCC
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~ 285 (390)
+..++.-+.+.-..+|.||+++||.+.-..+.. .| .+-+..|.+-|..+ +....-+--..+|..++.+. ..
T Consensus 176 l~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~--ly--~~li~~Ll~~L~~~-~q~~~~rt~Iq~l~~i~r~a----g~ 246 (1233)
T KOG1824|consen 176 LKCLLPQLQSPRLAVRKKAITALGHLASSCNRD--LY--VELIEHLLKGLSNR-TQMSATRTYIQCLAAICRQA----GH 246 (1233)
T ss_pred HHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH--HH--HHHHHHHHhccCCC-CchHHHHHHHHHHHHHHHHh----cc
Confidence 444555555555678999999999987654331 22 23345566666544 22223333556777777532 11
Q ss_pred CCchhhhhcCchHHHHHhh---cCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 286 VEPPLFRDRFFLKSVVDLT---ASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL---~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
.+.. .-..+++.+.+.. ..+|.+++|+.+.++..++. .|+..+-
T Consensus 247 r~~~--h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~---rcp~ei~ 293 (1233)
T KOG1824|consen 247 RFGS--HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR---RCPKEIL 293 (1233)
T ss_pred hhhc--ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH---hChhhhc
Confidence 1111 1235667777776 66789999999999999997 4666664
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.46 E-value=1.8 Score=45.43 Aligned_cols=144 Identities=14% Similarity=0.076 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhh--ccccc-cc----ccC----CCCChHHHHHHHHHHHHHhhCChHHHHHHH
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILV--EPIDN-AN----GQL----NHPDTDIRKISAWILGKASQNNPLVQKQVL 201 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lv--e~IDn-An----~lL----~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~l 201 (390)
+-..+.++..++....-++.+-.-||++. ++.|. || ..| ..+.+++....+.+|+++.......-+.++
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv 261 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV 261 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34456677777765555555544444332 22232 22 122 256778999999999999998666666688
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhh
Q 016423 202 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 278 (390)
Q Consensus 202 e~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~-~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~ 278 (390)
+.|++..++--....++.+...+..||+|+.-| ....+...++...-+-|..+-.+. |.-+|-.||..+.-|++.
T Consensus 262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELLRLHACLAVAVLATN 337 (832)
T ss_pred hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHHHHHHHHHHhhhhhh
Confidence 889999988888877777777777788886554 566677777777777666655554 556899999999999864
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.4 Score=36.40 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCC
Q 016423 179 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 258 (390)
Q Consensus 179 R~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~ 258 (390)
|..+...|+.++...++.=...++ -.+|+++..+.+.+..||..|..||-++++......-. .-..-+..|..++.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 556667777776654444222222 37999999999988899999999999998886553322 1245678888888876
Q ss_pred ChhHHHHHHHHHHHHHHh
Q 016423 259 SFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 259 ~~d~klr~KA~~LLs~L~ 276 (390)
+..+|. ++.+|-.|+
T Consensus 81 --d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 81 --DENVRS-AAELLDRLL 95 (97)
T ss_pred --chhHHH-HHHHHHHHh
Confidence 555554 556666665
|
|
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=92.24 E-value=3.9 Score=36.04 Aligned_cols=107 Identities=15% Similarity=0.085 Sum_probs=75.6
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC-hH
Q 016423 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN-PL 195 (390)
Q Consensus 117 L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN-p~ 195 (390)
+.+|=+......|.+.+.+..+.++.....+.+-..++..= +-.+.++.+.-.|..+|-++++|. +.
T Consensus 6 IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkR------------l~~~~n~~v~l~aL~LLe~~vkNCG~~ 73 (141)
T cd03565 6 IEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKR------------LNGNKNHKEVMLTLTVLETCVKNCGHR 73 (141)
T ss_pred HHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHH------------HccCCCHHHHHHHHHHHHHHHHHccHH
Confidence 34443333334577888888888877665555555544321 223578889999999999999995 68
Q ss_pred HHHHHHhcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhhCC
Q 016423 196 VQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 196 ~Q~~~le~g~l~~-Ll~LL~s~---~~~vr~kAL~ALSsLiR~~ 235 (390)
++..+...+.+.. |++++... +..|+.|.+.-|-+....+
T Consensus 74 fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 74 FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 8888888899987 99999742 3478888887777765544
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.4 Score=39.67 Aligned_cols=114 Identities=15% Similarity=0.107 Sum_probs=82.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc--HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 282 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG--l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~ 282 (390)
....+..+|.+.+..-|-.++.-+..++..+++ +.|..+++ +..|..+|+.+ .+..++.-++..+.+|+... .
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~--~ 100 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLI--R 100 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHh--c
Confidence 566788899988877788999899999988764 56656655 57788888876 36778889999999998632 2
Q ss_pred CCCCCchhhhh---cCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 283 MHKVEPPLFRD---RFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 283 ~~~~~~~~l~~---~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..++....+.- .++++.++.+++. ....+.++.+|..++..
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 34444333322 2455555555554 67889999999999974
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=91.83 E-value=2 Score=38.96 Aligned_cols=105 Identities=13% Similarity=0.190 Sum_probs=72.7
Q ss_pred hHHHHHcCcHHHHHHHhcCCCh----hHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHH
Q 016423 239 QEMFYVEAGDLMLQDILGNSSF----EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQ 312 (390)
Q Consensus 239 ~~~f~~~gGl~~L~~lL~s~~~----d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~ 312 (390)
...|+..||+..|...+.+... ...+...++..+..|.. +....=...+..+++.++..++.. |..+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMe------Hg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~ 77 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELME------HGIVSWDTLSDSFIKKIASYVNSSAMDASIL 77 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHh------cCcCchhhccHHHHHHHHHHHccccccchHH
Confidence 3589999999999999987632 12455666666666662 222121245677888888888765 78999
Q ss_pred HHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHH
Q 016423 313 EKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ 349 (390)
Q Consensus 313 EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~ 349 (390)
..||..|.+++..++.-.+.+.+.-.++.++.-|+..
T Consensus 78 q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~ 114 (160)
T PF11841_consen 78 QRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVS 114 (160)
T ss_pred HHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC
Confidence 9999999999987765445555455566666666543
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.2 Score=43.87 Aligned_cols=86 Identities=19% Similarity=0.158 Sum_probs=65.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.+++..+|..|++.+|..-.. -++|.|..++.+.+..+|..|++||+.+ +++ ..+
T Consensus 50 ~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~--~~~---------~a~ 107 (335)
T COG1413 50 KLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGEL--GDP---------EAV 107 (335)
T ss_pred HHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHcc--CCh---------hHH
Confidence 466778899999999997776322 2689999999998889999999977765 222 245
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+.|+.+|..+ .+..+|..+++.|..+-.
T Consensus 108 ~~li~~l~~d-~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 108 PPLVELLEND-ENEGVRAAAARALGKLGD 135 (335)
T ss_pred HHHHHHHHcC-CcHhHHHHHHHHHHhcCc
Confidence 6677777743 377899999999998864
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.56 E-value=4.2 Score=45.22 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=71.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+=|.++++.||..|...++.+= .+ -+-..+++++.+++.+.++-||.+|.+||..+=|=.+ +.+.+.|-.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~-----~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~ 168 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLR-----VK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLI 168 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcC-----hH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHH
Confidence 4567899999999999998871 22 2223478899999999888999999999999875433 344455566
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
..+..++.+. ++.+.+.|+..+..+..
T Consensus 169 ~~l~~l~~D~--dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 169 DILKELVADS--DPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHhhCC--CchHHHHHHHHHHHhch
Confidence 6667766665 67788888888877654
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=91.43 E-value=14 Score=38.01 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=79.5
Q ss_pred HHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc--------chHHHHHc----CcHHHHHHH
Q 016423 187 GKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--------GQEMFYVE----AGDLMLQDI 254 (390)
Q Consensus 187 gta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~--------a~~~f~~~----gGl~~L~~l 254 (390)
|-+..|+|...+ .+..|+.++.+ .++...|.-++.-++.+.+. ..+-++.. --++.|++.
T Consensus 260 aLv~R~~~~~~~------~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~ 331 (415)
T PF12460_consen 260 ALVMRGHPLATE------LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEG 331 (415)
T ss_pred HHHHcCCchHHH------HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHH
Confidence 445566665554 46779999987 44566666677777766322 22222222 235555665
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh--hcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 255 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 255 L~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.... +...|..-+.+|++++. +-| .+.+. -..++|.+++.|..+|.+++..++.+|..++...
T Consensus 332 ~~~~--~~~~k~~yL~ALs~ll~-----~vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 332 FKEA--DDEIKSNYLTALSHLLK-----NVP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred Hhhc--ChhhHHHHHHHHHHHHh-----hCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 5544 22267777888888885 222 11111 1468888999999999999999999999999854
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.26 E-value=3.4 Score=45.69 Aligned_cols=196 Identities=16% Similarity=0.135 Sum_probs=117.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhhccccccc------------
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSL---------------EDSQRALQELLILVEPIDNAN------------ 168 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~---------------e~~~~aLd~Le~lve~IDnAn------------ 168 (390)
.+++++++=...+-.+-||+.+..+-+.+.-+ .+....|--+-++|..-|+-+
T Consensus 24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna 103 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNA 103 (948)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHH
Confidence 45777764233445578999999888877433 223333444445555554422
Q ss_pred --ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 --GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 --~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
+-|.|||+=||-....-|+++ ++.=+-...+|.+...|.+...=||+.|+.||-++-+++. +.-..
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckL-------kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-----~L~pD 171 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKL-------KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-----HLIPD 171 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhc-------CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-----hhcCC
Confidence 568899999999999998887 1112223468888888988888899999999999987732 22345
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh----hh-c--CCC----CCc-------------hhhhhcCchHHHHH
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----LE-N--MHK----VEP-------------PLFRDRFFLKSVVD 302 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~----l~-~--~~~----~~~-------------~~l~~~g~v~~Lv~ 302 (390)
+-+++.++|.... |+.-+|+|...|...-.+. +. + .-+ ... ..-.+.-+++.+.+
T Consensus 172 apeLi~~fL~~e~-DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~ 250 (948)
T KOG1058|consen 172 APELIESFLLTEQ-DPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYN 250 (948)
T ss_pred hHHHHHHHHHhcc-CchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHH
Confidence 6666777765442 5556666654443322211 00 0 011 110 01124567778888
Q ss_pred hhcCCChhHHHHHHHHHHHHHh
Q 016423 303 LTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 303 lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+|.+.+..+.-.|..+|.+|..
T Consensus 251 lL~stssaV~fEaa~tlv~lS~ 272 (948)
T KOG1058|consen 251 LLSSTSSAVIFEAAGTLVTLSN 272 (948)
T ss_pred HHhcCCchhhhhhcceEEEccC
Confidence 9987766665555544444443
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=91.24 E-value=6.3 Score=38.71 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=75.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHH-----
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV----- 244 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~----- 244 (390)
.+.|+++.||..|..|+|-++-=+.+.-.. .++.+...+..++..++..|+.+|.-++..|....-.-..
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 568899999999999999998877633322 3777888887777889999999999988877643222111
Q ss_pred ---cCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 245 ---EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 245 ---~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
..-..++.+.+.+. +..++.-|+--++-|+-
T Consensus 110 ~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLL 143 (298)
T ss_pred chHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHh
Confidence 22356677777766 56689999999998874
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.85 Score=35.93 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 179 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 179 R~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
...|.|++|++++. |.-...+-+.+.++.++++....+ ..+|--|.|+|+=+.+. ..+.+.+.
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~ 67 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILD 67 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHH
Confidence 46799999999876 445555667899999999998765 57899999999876554 55555443
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.15 E-value=1.3 Score=48.88 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=93.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+=|+|++--+...|.-+||+++.- .-++ ...|.+-+++++.++-+|.||+.|.--++|.-|.-.+.|..
T Consensus 114 nDL~s~nq~vVglAL~alg~i~s~-Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~---- 182 (866)
T KOG1062|consen 114 NDLNSSNQYVVGLALCALGNICSP-EMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI---- 182 (866)
T ss_pred hhccCCCeeehHHHHHHhhccCCH-HHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH----
Confidence 568899999999999999999654 2222 36788889999988889999999999999998888777752
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc---------------CCChhHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---------------SADLDLQE 313 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---------------~~d~~v~E 313 (390)
....+|.++ +.-+-.-++.++..||. .+++....+.+ +++.+|..|+ -+|+-+|-
T Consensus 183 -~~~~lL~ek--~hGVL~~~l~l~~e~c~-----~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi 252 (866)
T KOG1062|consen 183 -AFRKLLCEK--HHGVLIAGLHLITELCK-----ISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI 252 (866)
T ss_pred -HHHHHHhhc--CCceeeeHHHHHHHHHh-----cCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHH
Confidence 334445544 23345566677777774 34444444443 5555555441 13566777
Q ss_pred HHHHHHHHHHhcC
Q 016423 314 KALAAIKNLLQLR 326 (390)
Q Consensus 314 kAL~aL~~L~~~~ 326 (390)
+.|+.|.-|-+..
T Consensus 253 ~iLrlLriLGq~d 265 (866)
T KOG1062|consen 253 RILRLLRILGQND 265 (866)
T ss_pred HHHHHHHHhcCCC
Confidence 7777766666543
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.98 E-value=3.6 Score=40.53 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=41.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSL 231 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsL 231 (390)
.+|.+.++.+|..|+.+||.+ .+ ...++.|+.++.. .+..+|..|.++|..+
T Consensus 81 ~~l~d~~~~vr~~a~~aLg~~-~~----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~ 133 (335)
T COG1413 81 ELLSDEDPRVRDAAADALGEL-GD----------PEAVPPLVELLENDENEGVRAAAARALGKL 133 (335)
T ss_pred HHhcCCCHHHHHHHHHHHHcc-CC----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhc
Confidence 467788889999999988877 21 2368999999985 6677999999999876
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.97 E-value=5.8 Score=45.65 Aligned_cols=167 Identities=17% Similarity=0.132 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhcc-ccccc----------------ccC-CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHH
Q 016423 149 DSQRALQELLILVEP-IDNAN----------------GQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 210 (390)
Q Consensus 149 ~~~~aLd~Le~lve~-IDnAn----------------~lL-~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll 210 (390)
..+-+|..|.-+|.- -|-|. .+| .+.++.|+..|..+|..+..|-| |-+.+.+.|.+-.|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHHHHH
Confidence 334456666665543 35564 223 35788899999999999977765 777788889999999
Q ss_pred HhhcCCCHHHHH---HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC
Q 016423 211 KMVKSSFVEEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE 287 (390)
Q Consensus 211 ~LL~s~~~~vr~---kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~ 287 (390)
.||.+-+ +.|. ..+|||++ ++.-..+-.++||+..|..++-.. +....|..|+-|+..|..+.+ ..|..
T Consensus 1820 ~lLHS~P-S~R~~vL~vLYAL~S----~~~i~keA~~hg~l~yil~~~c~~-~~~QqRAqaAeLlaKl~Adkl--~GPrV 1891 (2235)
T KOG1789|consen 1820 TLLHSQP-SMRARVLDVLYALSS----NGQIGKEALEHGGLMYILSILCLT-NSDQQRAQAAELLAKLQADKL--TGPRV 1891 (2235)
T ss_pred HHHhcCh-HHHHHHHHHHHHHhc----CcHHHHHHHhcCchhhhhHHHhcc-CcHHHHHHHHHHHHHhhhccc--cCCce
Confidence 9999864 3444 56677665 355566778899998888877644 256688899999999986442 23322
Q ss_pred chhhh---h-------cCchHHHHHhhcCC--------ChhHHHHHHHHHHHHHh
Q 016423 288 PPLFR---D-------RFFLKSVVDLTASA--------DLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 288 ~~~l~---~-------~g~v~~Lv~lL~~~--------d~~v~EkAL~aL~~L~~ 324 (390)
.-.++ - .+-..+.|+.+..+ +...+.+.-..+..++.
T Consensus 1892 ~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~ 1946 (2235)
T KOG1789|consen 1892 TITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVG 1946 (2235)
T ss_pred eeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHH
Confidence 11111 1 12236677777543 34556666666666653
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.26 E-value=2.6 Score=46.32 Aligned_cols=145 Identities=19% Similarity=0.158 Sum_probs=97.0
Q ss_pred HHHHHcCCCChH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-------ccCCCCChHHHHHHHHHHHHHh
Q 016423 119 ELMEKLKTPSDA-QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-------GQLNHPDTDIRKISAWILGKAS 190 (390)
Q Consensus 119 eal~~~~~~~d~-~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-------~lL~s~~~~vR~~Aa~vLgta~ 190 (390)
.+.+++.-.+|. .+....+....+ +...=+--.||+=|.-++ ..|-|+ .+|+|+-+=+|..|.-++-.+.
T Consensus 95 aa~qSf~~~tdvlmL~tn~~rkdl~-S~n~ye~giAL~GLS~fv-TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvF 172 (877)
T KOG1059|consen 95 AASQSFHDDTDVLMLTTNLLRKDLN-SSNVYEVGLALSGLSCIV-TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVF 172 (877)
T ss_pred HHHHhhcCCccHHHHHHHHHHHHhc-cCccchhhheeccccccc-CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 455665433322 233333333333 334445556777776666 445555 6899999999999999998885
Q ss_pred hCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHH
Q 016423 191 QNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 270 (390)
Q Consensus 191 QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~ 270 (390)
---|..-. -++|+|..-|.++++.|...|+..|+-|.|.||.+.-.+. +.+..+|.+.+ +.=+..|.+-
T Consensus 173 LkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA-----P~ffkllttSs-NNWmLIKiiK 241 (877)
T KOG1059|consen 173 LKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA-----PLFYKLLVTSS-NNWVLIKLLK 241 (877)
T ss_pred HhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc-----HHHHHHHhccC-CCeehHHHHH
Confidence 55443221 3699999999999999999999999999999999866552 45555655432 3335667777
Q ss_pred HHHHHh
Q 016423 271 LVGDLA 276 (390)
Q Consensus 271 LLs~L~ 276 (390)
++.+|+
T Consensus 242 LF~aLt 247 (877)
T KOG1059|consen 242 LFAALT 247 (877)
T ss_pred HHhhcc
Confidence 777776
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.18 E-value=19 Score=35.08 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=102.2
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhCCccchHHHHH-cCc
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMFYV-EAG 247 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-----~~vr~kAL~ALSsLiR~~~~a~~~f~~-~gG 247 (390)
+...-|..-+-+|=-++..+|+.+..|+....=-.|-..|+..+ +-+|..++..|++|+.+.......|.. .+-
T Consensus 90 ~~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeI 169 (293)
T KOG3036|consen 90 PAQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEI 169 (293)
T ss_pred ccccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 44556777777777777888999999999873333444554322 347999999999999998887777764 566
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC----c---hhh-hhcCchHHH-HHhhcCCChhHHHHHHHH
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE----P---PLF-RDRFFLKSV-VDLTASADLDLQEKALAA 318 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~----~---~~l-~~~g~v~~L-v~lL~~~d~~v~EkAL~a 318 (390)
++...+++... +.--|.-|.|.+.-++. ++.- + +.| .-.-++..+ .++.+.++..+..++++|
T Consensus 170 VPlCLrime~G--SelSKtvA~fIlqKIll------dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRc 241 (293)
T KOG3036|consen 170 VPLCLRIMESG--SELSKTVATFILQKILL------DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRC 241 (293)
T ss_pred HHHHHHHHhcc--cHHHHHHHHHHHHHHhh------ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 78888888865 33356677788777763 2211 1 111 112233333 344566789999999999
Q ss_pred HHHHHhcChhHHHHHH
Q 016423 319 IKNLLQLRTTEALVLK 334 (390)
Q Consensus 319 L~~L~~~~~~~r~~~~ 334 (390)
...|... +..|..++
T Consensus 242 YlrLsdn-prar~aL~ 256 (293)
T KOG3036|consen 242 YLRLSDN-PRARAALR 256 (293)
T ss_pred HHHhcCC-HHHHHHHH
Confidence 9998764 45666665
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.13 E-value=43 Score=39.00 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=105.3
Q ss_pred HHHhHHHHHHHHHHc-CC--CChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhhccccccc---------ccCCCC
Q 016423 110 LKKRQMEIKELMEKL-KT--PSDAQLIQIAIDDLNNST---LSLEDSQRALQELLILVEPIDNAN---------GQLNHP 174 (390)
Q Consensus 110 l~~r~~~L~eal~~~-~~--~~d~~~Mk~~l~~l~~~~---~s~e~~~~aLd~Le~lve~IDnAn---------~lL~s~ 174 (390)
+.-|..||+-....+ .. .+.....++++..+.... ........-||.+--++.-.|+.+ ...++.
T Consensus 587 l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~ 666 (1176)
T KOG1248|consen 587 LASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSS 666 (1176)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccc
Confidence 335888888877443 32 233345666655543322 233344555677766666666665 223567
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
+..+|..+-.+|..+++. |.++..+... .....|.+-+++.+...+..++.+|+.|++.++.-...|+...-.++|+
T Consensus 667 ~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL 745 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVIL 745 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 899999999999999988 6666655544 3455666666666667899999999999999884344444444445544
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHh
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
.. +. .+.+.|+.|--+|..|.
T Consensus 746 ~~-Ke--~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 746 SL-KE--VNVKARRNAFALLVFIG 766 (1176)
T ss_pred hc-cc--ccHHHHhhHHHHHHHHH
Confidence 43 33 36667777777777777
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.01 E-value=9.6 Score=40.45 Aligned_cols=163 Identities=13% Similarity=0.138 Sum_probs=114.6
Q ss_pred HHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChh
Q 016423 183 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE 261 (390)
Q Consensus 183 a~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d 261 (390)
..++.++.|.....|..|+++ +.-|..+++.++ .+.-..++..+++|.-..-+-..-....+-++-+...|+.....
T Consensus 485 mK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~e 562 (791)
T KOG1222|consen 485 MKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADE 562 (791)
T ss_pred HHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccc
Confidence 457888999988899999994 667777887665 45677888888888554344344555678889999998743223
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHhcChhHHHHHHhhCCc
Q 016423 262 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339 (390)
Q Consensus 262 ~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL 339 (390)
..++...+-.+..++. +.+-...+...|+++.++++|+.. |..+.-..+-...+++.+ +..|..+.....+
T Consensus 563 ddLvL~~vi~~GT~a~------d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~ 635 (791)
T KOG1222|consen 563 DDLVLQIVIACGTMAR------DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETAL 635 (791)
T ss_pred hhhhhHHHHHhhhhhh------hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccc
Confidence 3467777777777663 333334466789999999999774 667777777777788877 3566666666666
Q ss_pred H-HHHHHHHHHHHHhh
Q 016423 340 D-TALERLRQQLQEVM 354 (390)
Q Consensus 340 ~-~~L~~Lr~~l~el~ 354 (390)
. .++..++..+.+.-
T Consensus 636 ~AylIDLMHDkN~eiR 651 (791)
T KOG1222|consen 636 GAYLIDLMHDKNAEIR 651 (791)
T ss_pred hHHHHHHHhcccHHHH
Confidence 3 45666666666543
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.01 E-value=7.2 Score=43.90 Aligned_cols=160 Identities=14% Similarity=0.183 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHhhcccc--cc-c----------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHH
Q 016423 147 LEDSQRALQELLILVEPID--NA-N----------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMK 211 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~ID--nA-n----------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~ 211 (390)
-.++..||+.+-..+++-- -- + ..+...|..|-..|+.+|.-++--+... +..+ +.+|.|+.
T Consensus 267 WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~---~~~~~~~v~p~lld 343 (815)
T KOG1820|consen 267 WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL---FRKYAKNVFPSLLD 343 (815)
T ss_pred hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh---hHHHHHhhcchHHH
Confidence 3577888888887777643 10 1 2345677888899999999998876554 3332 67899999
Q ss_pred hhcCCCHHH---HHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCc
Q 016423 212 MVKSSFVEE---AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 288 (390)
Q Consensus 212 LL~s~~~~v---r~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~ 288 (390)
-+..-...+ .++++-++++.+. . ..-.+.+...+++. .+.++.....++...+.. .++...
T Consensus 344 ~lkekk~~l~d~l~~~~d~~~ns~~-----l-----~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~----~~~~~~ 407 (815)
T KOG1820|consen 344 RLKEKKSELRDALLKALDAILNSTP-----L-----SKMSEAILEALKGK--NPQIKGECLLLLDRKLRK----LGPKTV 407 (815)
T ss_pred HhhhccHHHHHHHHHHHHHHHhccc-----H-----HHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhh----cCCcCc
Confidence 988765444 4566666666111 1 11235666777776 566777776666666642 233444
Q ss_pred hhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 289 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 289 ~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+.---.+++++++...+..+.+||..|++++..+...
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 4444568888888888888999999999999998863
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=89.91 E-value=6.7 Score=39.62 Aligned_cols=148 Identities=17% Similarity=0.135 Sum_probs=112.1
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC---cHHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLM 250 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g---Gl~~ 250 (390)
+++++--.+-.+|-.|+...+ +-..++....+-.+.+.+..++=++..-|...+..++..|+.....|...+ -+..
T Consensus 135 ~~~dial~~g~mlRec~k~e~-l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~ 213 (335)
T PF08569_consen 135 ENPDIALNCGDMLRECIKHES-LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQK 213 (335)
T ss_dssp GSTTTHHHHHHHHHHHTTSHH-HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred cCccccchHHHHHHHHHhhHH-HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 456666677778888877744 445677788889999999888878999999999998888888888888766 3457
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC-chhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
...+|.++ +-=.|+.++-||+.|+.. ..+... ...+.+..-++.++.+|++....+|-.|-+...-++..+.
T Consensus 214 ~~~Ll~s~--NYvtkrqslkLL~ellld---r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 214 YNKLLESS--NYVTKRQSLKLLGELLLD---RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHCT-S--SHHHHHHHHHHHHHHHHS---GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHccCC--CeEeehhhHHHHHHHHHc---hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 77888876 455899999999999952 122222 3445677889999999999999999999999999998653
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.87 E-value=3.8 Score=44.70 Aligned_cols=183 Identities=12% Similarity=0.111 Sum_probs=107.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHH
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 250 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~ 250 (390)
|..+--+||.+|...++.++++.|..-.. ++..|+.+++++...||.||++||--+..|-. +...-++.
T Consensus 382 lEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~eeql~~ 450 (823)
T KOG2259|consen 382 LEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLA------IREEQLRQ 450 (823)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe------ecHHHHHH
Confidence 34455689999999999999999987765 46779999999888899999999998877621 22334567
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHH
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 330 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r 330 (390)
+...|.+. ++.+|...--+|.+.= -++ .+- + .-++..+...|... +.=+...++|+.-+.+ +++
T Consensus 451 il~~L~D~--s~dvRe~l~elL~~~~-------~~d-~~~-i-~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGq---nH~ 514 (823)
T KOG2259|consen 451 ILESLEDR--SVDVREALRELLKNAR-------VSD-LEC-I-DMCVAHLLKNLGKY-PQDRDEILRCMGRIGQ---NHR 514 (823)
T ss_pred HHHHHHhc--CHHHHHHHHHHHHhcC-------CCc-HHH-H-HHHHHHHHHHhhhC-CCCcHHHHHHHHHHhc---cCh
Confidence 77888765 4545554433333221 111 111 1 11222333333221 1123345566666655 344
Q ss_pred HHHHhhCCcHHHHHHHHHHHHH------hhhhhhhhhhHHHHHH-------------HHHHHHHHHHHHhhhcccccC
Q 016423 331 LVLKDFCGLDTALERLRQQLQE------VMLEEDQRDYAMDVEA-------------LRREVELIFFRKLDDSGSNMI 389 (390)
Q Consensus 331 ~~~~~~~gL~~~L~~Lr~~l~e------l~~~e~~~ey~~dl~~-------------lr~e~~~~~~~~~~~~~~~~~ 389 (390)
..+. .-++.-++. ...+.|+..|...|=- .+.|.+.-+...|+.+-+|..
T Consensus 515 ~lv~---------s~m~rfl~kh~~f~t~e~s~ed~~y~akLilv~nAa~~~p~ii~s~Pea~hrhla~Lr~sspnLv 583 (823)
T KOG2259|consen 515 RLVL---------SNMGRFLEKHTSFATIEPSLEDGFYIAKLILVRNAARADPGIIVSRPEAHHRHLAILRCSSPNLV 583 (823)
T ss_pred hhHH---------HHHHHHHHhcccccccCccccChhhhhhhhhhhhhhhhCCCeeeechHHHHHHHHHHhccCCCCC
Confidence 3332 112222222 1124457777766321 236778888888888888864
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.84 E-value=4.9 Score=44.49 Aligned_cols=119 Identities=14% Similarity=0.263 Sum_probs=64.2
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhh--------h--h---cCCC------CCchhh-------------hhcCchHH
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQ--------L--E---NMHK------VEPPLF-------------RDRFFLKS 299 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~--------l--~---~~~~------~~~~~l-------------~~~g~v~~ 299 (390)
..+|.++ |..+|+|++.+.-+|++.. + | ..+. ..+..+ ....+++.
T Consensus 323 LrvLss~--dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ 400 (948)
T KOG1058|consen 323 LRVLSSP--DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSL 400 (948)
T ss_pred HHHcCcc--cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 4445565 7889999999999998742 1 0 0111 112222 12456677
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcH-HHHHHHHHHHHHhhh--------hhhhhhhHHHHHHHH
Q 016423 300 VVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD-TALERLRQQLQEVML--------EEDQRDYAMDVEALR 370 (390)
Q Consensus 300 Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~-~~L~~Lr~~l~el~~--------~e~~~ey~~dl~~lr 370 (390)
+++++...+...---++..+.... .....|+ ..+++|...+.+.-+ .. ..+||+..+..+
T Consensus 401 ll~fisD~N~~aas~vl~FvrE~i----------ek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi-~GeYce~~~~i~ 469 (948)
T KOG1058|consen 401 LLDFISDSNEAAASDVLMFVREAI----------EKFPNLRASIIEKLLETFPQIRSSKICRGALWI-LGEYCEGLSEIQ 469 (948)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHH----------HhCchHHHHHHHHHHHhhhhhcccccchhHHHH-HHHHHhhhHHHH
Confidence 777777666443333333333333 2233442 334555555554332 44 789998875544
Q ss_pred HHHHHHHHHHhhhc
Q 016423 371 REVELIFFRKLDDS 384 (390)
Q Consensus 371 ~e~~~~~~~~~~~~ 384 (390)
. +-.+-+++||+.
T Consensus 470 ~-~~k~i~~slGEv 482 (948)
T KOG1058|consen 470 S-VIKIIRQSLGEV 482 (948)
T ss_pred H-HHHHHHHhcccc
Confidence 3 334557777764
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.84 E-value=2.9 Score=45.63 Aligned_cols=156 Identities=14% Similarity=0.067 Sum_probs=108.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHH-HHhc---CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQ-VLEL---GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~-~le~---g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~ 244 (390)
.+|.+++....+-|..+|..++...+..-+. +... -.||++++..+++++..|.-|+.++-..|-..+.+...-+
T Consensus 135 ~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i- 213 (885)
T KOG2023|consen 135 ELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI- 213 (885)
T ss_pred HHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH-
Confidence 3567788788888999999998886654332 2222 2589999999999999999999999887766554422111
Q ss_pred cCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 245 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 245 ~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
-.-++.|..+ .++ .++.+|...|..+..|+.. ......+.+ .++++.+....+..|..+--.|.....+++.
T Consensus 214 D~Fle~lFal-anD-~~~eVRk~vC~alv~Llev----r~dkl~phl--~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 214 DKFLEILFAL-AND-EDPEVRKNVCRALVFLLEV----RPDKLVPHL--DNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHH-ccC-CCHHHHHHHHHHHHHHHHh----cHHhcccch--HHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 1112333332 333 4788999999999999842 111222222 4788888888888888888889999999998
Q ss_pred cChhHHHHHH
Q 016423 325 LRTTEALVLK 334 (390)
Q Consensus 325 ~~~~~r~~~~ 334 (390)
.. .|+..+.
T Consensus 286 qp-i~~~~L~ 294 (885)
T KOG2023|consen 286 QP-ICKEVLQ 294 (885)
T ss_pred Cc-CcHHHHH
Confidence 75 7877765
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=89.70 E-value=1.2 Score=39.87 Aligned_cols=95 Identities=18% Similarity=0.075 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHh-cCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le-~g~l~~Ll~LL~--s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
.+-...+..+++++-+--|.+=..++. .|.++.++.+.. +.+..+...++-+|+.-|-+ .....|+..+|++.|.
T Consensus 57 ~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~ 134 (157)
T PF11701_consen 57 MDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLK 134 (157)
T ss_dssp CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHH
T ss_pred chhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHH
Confidence 346678999999999999998777664 488899999998 66677889999999998755 3456777889999999
Q ss_pred HHhcCCChhHH-HHHHHHHHHH
Q 016423 253 DILGNSSFEIR-LHRKAVSLVG 273 (390)
Q Consensus 253 ~lL~s~~~d~k-lr~KA~~LLs 273 (390)
..++.+. +.. +|..|+-.|.
T Consensus 135 ~~~~~~~-~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 135 ELYKNSK-DDSEIRVLAAVGLC 155 (157)
T ss_dssp HHTTTCC--HH-CHHHHHHHHH
T ss_pred HHHcccc-chHHHHHHHHHHHh
Confidence 9996543 344 6777766554
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.51 E-value=4.1 Score=42.56 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=88.1
Q ss_pred CCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh-hhcCC---CCCchhhhhcCchHHHHHhhcCC--
Q 016423 234 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ-LENMH---KVEPPLFRDRFFLKSVVDLTASA-- 307 (390)
Q Consensus 234 ~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~-l~~~~---~~~~~~l~~~g~v~~Lv~lL~~~-- 307 (390)
..|.-.--|++.+|++.|..+|...++|+ -.-.+-|+..|+..- +.++. +.+.+.+++.+++..|++-+..-
T Consensus 113 t~PdLYp~lveln~V~slL~LLgHeNtDI--~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdE 190 (536)
T KOG2734|consen 113 TMPDLYPILVELNAVQSLLELLGHENTDI--AIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDE 190 (536)
T ss_pred cChHHHHHHHHhccHHHHHHHhcCCCchh--HHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhh
Confidence 45777778999999999999999886675 456777777777421 11111 14567889999999999988543
Q ss_pred ----ChhHHHHHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 016423 308 ----DLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVMLEEDQRDYAMDVEA 368 (390)
Q Consensus 308 ----d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l~el~~~e~~~ey~~dl~~ 368 (390)
+.+-...++..+.+++...+..++..... |+ .=+|.+ +..-++++--+.||.+|-+
T Consensus 191 svkeea~gv~~~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~r----l~~k~~f~aNk~YasEiLa 251 (536)
T KOG2734|consen 191 SVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ-GLLSWLLKR----LKGKAAFDANKQYASEILA 251 (536)
T ss_pred cchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh-hHHHHHHHH----HhcccCcchhHHHHHHHHH
Confidence 45667788999999998877655554433 54 333343 3444455557888888743
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.48 E-value=9.5 Score=43.34 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=76.9
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
.+..+..|.-.+.|||.++-+||.. .+|+|=..+.++....|.-++.|+--.+...|+..+.... .-+.-.
T Consensus 942 E~~eegtR~vvAECLGkL~l~epes--------LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~f 1012 (1233)
T KOG1824|consen 942 ECAEEGTRNVVAECLGKLVLIEPES--------LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDF 1012 (1233)
T ss_pred ccchhhhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHH
Confidence 4466778999999999999999953 6889888888888778888888888888888887776543 344555
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
..+++++ |..+|+-|+..+.+.+.
T Consensus 1013 l~~~~dp--Dl~VrrvaLvv~nSaah 1036 (1233)
T KOG1824|consen 1013 LKLLRDP--DLEVRRVALVVLNSAAH 1036 (1233)
T ss_pred HHHHhCC--chhHHHHHHHHHHHHHc
Confidence 6677876 88999999999988885
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.62 Score=29.99 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=25.6
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 296 FLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 296 ~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+++.+.++++.++..+|..|+.+|+.|++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999986
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=89.30 E-value=24 Score=35.90 Aligned_cols=96 Identities=14% Similarity=0.204 Sum_probs=62.0
Q ss_pred HHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHH-HHHHHHHHHHHHh
Q 016423 154 LQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE-EAVKALYTVSSLI 232 (390)
Q Consensus 154 Ld~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~-vr~kAL~ALSsLi 232 (390)
-|+++|+++.|. .+....+|..++--|++-+++ |..+..|..+|...++++.+...... .-.-++.++--++
T Consensus 20 ~Dev~ylld~l~------~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l 92 (361)
T PF07814_consen 20 ADEVEYLLDGLE------SSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVL 92 (361)
T ss_pred HHHHHHHHhhcc------cCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 477777777764 344567888888888888774 88888999999999999999654432 2222222333333
Q ss_pred hCCccchHHHHHcCcHHHHHHHhc
Q 016423 233 RNNLAGQEMFYVEAGDLMLQDILG 256 (390)
Q Consensus 233 R~~~~a~~~f~~~gGl~~L~~lL~ 256 (390)
....+....+...+-..++..++.
T Consensus 93 ~~d~~~~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 93 SRDGLNMHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred ccCCcchhhhhchhHHHHHHHHhc
Confidence 333344444445555666677766
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=89.23 E-value=2.9 Score=43.81 Aligned_cols=124 Identities=17% Similarity=0.127 Sum_probs=89.9
Q ss_pred HHHHHHhhCCccchHHHHHcCcHHHHHHHh--------cCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCch
Q 016423 226 YTVSSLIRNNLAGQEMFYVEAGDLMLQDIL--------GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 297 (390)
Q Consensus 226 ~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL--------~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v 297 (390)
-+|--+-|+ +.+...++...|+..|...- .....+..+.+.|+.+|+|++. .++..+..+.+.|..
T Consensus 3 ~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf-----~s~~aR~~~~~~~~~ 76 (446)
T PF10165_consen 3 ETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALF-----LSPSARQIFVDLGLA 76 (446)
T ss_pred HHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHh-----CCHHHHHHHHHcCcH
Confidence 344445555 44555666666666666654 1122477899999999999995 577888999999999
Q ss_pred HHHHHhhcCC-----ChhHHHHHHHHHHHHHhcChhHHHHHHhh-CCcHHHHHHHHHHHHHhhh
Q 016423 298 KSVVDLTASA-----DLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVML 355 (390)
Q Consensus 298 ~~Lv~lL~~~-----d~~v~EkAL~aL~~L~~~~~~~r~~~~~~-~gL~~~L~~Lr~~l~el~~ 355 (390)
+.++..|+.. +.++.=-.++.|.-+....++.+..+... .|++-....|...++....
T Consensus 77 ~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~ 140 (446)
T PF10165_consen 77 EKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSK 140 (446)
T ss_pred HHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 9999999876 67888888888887777777788777766 4556667777777765443
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.77 E-value=7.4 Score=44.12 Aligned_cols=134 Identities=10% Similarity=-0.057 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHhhc------CCCHHH--HHHHHHHHHHHh---hCCccchHHHHHcCc
Q 016423 180 KISAWILGKASQNN-PLVQKQVLELGALSKLMKMVK------SSFVEE--AVKALYTVSSLI---RNNLAGQEMFYVEAG 247 (390)
Q Consensus 180 ~~Aa~vLgta~QNN-p~~Q~~~le~g~l~~Ll~LL~------s~~~~v--r~kAL~ALSsLi---R~~~~a~~~f~~~gG 247 (390)
.+|..++-+++.-- +.. =.|.++-++++|. .+...- +.-|+.++|+++ ....+-... .+.=-
T Consensus 390 ~Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~fl 463 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFL 463 (1010)
T ss_pred HHHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHH
Confidence 46777777775442 111 1246777777776 222222 335677766665 333331122 12222
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc-CCChhHHHHHHHHHHHHHhcC
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+.+...++++ ---+|.||||.++.++. .++...-.-..+.+.+.++|. +.+..|+-.|+-||..+....
T Consensus 464 v~hVfP~f~s~--~g~Lrarac~vl~~~~~-------~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~ 534 (1010)
T KOG1991|consen 464 VNHVFPEFQSP--YGYLRARACWVLSQFSS-------IDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQ 534 (1010)
T ss_pred HHHhhHhhcCc--hhHHHHHHHHHHHHHHh-------ccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcc
Confidence 34455556776 34599999999999984 333333344566777788887 668899999999999999865
Q ss_pred hh
Q 016423 327 TT 328 (390)
Q Consensus 327 ~~ 328 (390)
+.
T Consensus 535 ~~ 536 (1010)
T KOG1991|consen 535 EQ 536 (1010)
T ss_pred hh
Confidence 43
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=88.54 E-value=5.7 Score=35.02 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHH
Q 016423 222 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 301 (390)
Q Consensus 222 ~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 301 (390)
-..+-.|+=+|+..+.+.. .++..|..-|+++ +++++..|+.+|-.++. +-.+.+...+.+.+++..++
T Consensus 19 w~~ileicD~In~~~~~~k-----~a~rai~krl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 19 WEAIQAFCEQINKEPEGPQ-----LAVRLLAHKIQSP--QEKEALQALTVLEACMK----NCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred HHHHHHHHHHHHcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHHhHHHHHHHH
Confidence 3556677778876554422 3456677778876 67789999999999986 45667778888999999999
Q ss_pred HhhcC------CChhHHHHHHHHHHHHHh
Q 016423 302 DLTAS------ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 302 ~lL~~------~d~~v~EkAL~aL~~L~~ 324 (390)
.+++. .+..|+++++..+.+-..
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 99963 478999999988877664
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.14 E-value=50 Score=37.08 Aligned_cols=85 Identities=18% Similarity=0.151 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhccccccc--------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHH
Q 016423 151 QRALQELLILVEPIDNAN--------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV 222 (390)
Q Consensus 151 ~~aLd~Le~lve~IDnAn--------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~ 222 (390)
-.||..|...|.+=.+|- .||+.+++.||.+|...+-.++-.+ .+.. .+..|+..|.+.++.++.
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~-Nv~~------mv~eLl~fL~~~d~~~k~ 403 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES-NVRV------MVKELLEFLESSDEDFKA 403 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc-cHHH------HHHHHHHHHHhccHHHHH
Confidence 345555666665555553 7999999999999999998886543 2333 467788888887778888
Q ss_pred HHHHHHHHHhhCCccchHHH
Q 016423 223 KALYTVSSLIRNNLAGQEMF 242 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f 242 (390)
...+-|.-++-.|.|....|
T Consensus 404 ~~as~I~~laEkfaP~k~W~ 423 (866)
T KOG1062|consen 404 DIASKIAELAEKFAPDKRWH 423 (866)
T ss_pred HHHHHHHHHHHhcCCcchhH
Confidence 88888888888877764433
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.95 E-value=1.5 Score=46.13 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=71.3
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh---CCccchHHHH-HcCc
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR---NNLAGQEMFY-VEAG 247 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR---~~~~a~~~f~-~~gG 247 (390)
.|++.-++..|...++..+=...--|+..+-.++....+..+.+..-.+|.|+.|++|++.- .+-|+.+-|. ..-|
T Consensus 401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg 480 (728)
T KOG4535|consen 401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG 480 (728)
T ss_pred chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence 45566688999999998887766667766666778888888877666789999999998643 2333322222 2223
Q ss_pred HH---HHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 248 DL---MLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 248 l~---~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.- .+......+....|++.+|+..|.++++
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 22 2222222333467899999999999986
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.91 E-value=19 Score=39.85 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhhccccccc-------ccCCC--CChHHHHHHHHHHHHHhhCChH
Q 016423 127 PSDAQLIQIAIDDLNNSTLSLEDS--QRALQELLILVEPIDNAN-------GQLNH--PDTDIRKISAWILGKASQNNPL 195 (390)
Q Consensus 127 ~~d~~~Mk~~l~~l~~~~~s~e~~--~~aLd~Le~lve~IDnAn-------~lL~s--~~~~vR~~Aa~vLgta~QNNp~ 195 (390)
..-.++||..+..+.+.-.+-+.. .-||.-+ --|-.-|++- ++|-| ..+-||..||-|+=.+-.++|.
T Consensus 103 n~n~dl~klvin~iknDL~srn~~fv~LAL~~I-~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD 181 (938)
T KOG1077|consen 103 NENSDLMKLVINSIKNDLSSRNPTFVCLALHCI-ANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD 181 (938)
T ss_pred hcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHH-HhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc
Confidence 345789999998888765443322 2233221 1122234433 67754 3456999999999999999997
Q ss_pred HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCC-----------ChhHHH
Q 016423 196 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-----------SFEIRL 264 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~-----------~~d~kl 264 (390)
.+. ..++..+++.||++....|...+..-|-+|+..+|+.+.--+ .-.+..|..+.... -+.+=+
T Consensus 182 l~~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~-~~avs~L~riv~~~~t~~qdYTyy~vP~PWL 257 (938)
T KOG1077|consen 182 LVN---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL-PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWL 257 (938)
T ss_pred ccC---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH-HHHHHHHHHHHhhcccchhhceeecCCChHH
Confidence 655 357899999999987766666777778888888777644322 11222222222111 124567
Q ss_pred HHHHHHHHHHH
Q 016423 265 HRKAVSLVGDL 275 (390)
Q Consensus 265 r~KA~~LLs~L 275 (390)
+.|.+.+|.++
T Consensus 258 ~vKl~rlLq~~ 268 (938)
T KOG1077|consen 258 QVKLLRLLQIY 268 (938)
T ss_pred HHHHHHHHHhC
Confidence 77777777665
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=87.83 E-value=2.5 Score=34.98 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHH
Q 016423 221 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 300 (390)
Q Consensus 221 r~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~L 300 (390)
|..++.+|++..-..+...... -..-++++..++.++ +.++|--||-.|++++.. ...+..+. -..+...|
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k~----~~~~~l~~--f~~IF~~L 73 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQ--DSRVRYYACEALYNISKV----ARGEILPY--FNEIFDAL 73 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHH----HHHHHHHH--HHHHHHHH
Confidence 5567888888877655553333 245678888888886 899999999999999852 11222221 24566777
Q ss_pred HHhhcCCChhHHHHHHHHHHHHH
Q 016423 301 VDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 301 v~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
..++..+|.+|+..| ..|..|+
T Consensus 74 ~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 74 CKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHcCCchhHHHHH-HHHHHHh
Confidence 777777787877766 4444444
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=87.69 E-value=1.6 Score=39.16 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=61.5
Q ss_pred HHHHhhCC-hHHHHHHHhcCcHHHHHHhhcCC---------CHHHHHHHHHHHHHHhhCCccchHHHHH-cCcHHHHHHH
Q 016423 186 LGKASQNN-PLVQKQVLELGALSKLMKMVKSS---------FVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDI 254 (390)
Q Consensus 186 Lgta~QNN-p~~Q~~~le~g~l~~Ll~LL~s~---------~~~vr~kAL~ALSsLiR~~~~a~~~f~~-~gGl~~L~~l 254 (390)
|...-.++ ...=+.|++.||+..|+.+|..- .......++.+|-+++. +..|...+.. .+++..|..+
T Consensus 88 L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~~~G~~~v~~~~~~v~~i~~~ 166 (187)
T PF06371_consen 88 LRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-TKYGLEAVLSHPDSVNLIALS 166 (187)
T ss_dssp HHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-SHHHHHHHHCSSSHHHHHHHT
T ss_pred HHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-cHHHHHHHHcCcHHHHHHHHH
Confidence 33333443 44566799999999999998521 12456678888887764 4577777665 5678999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHh
Q 016423 255 LGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 255 L~s~~~d~klr~KA~~LLs~L~ 276 (390)
|.++ ++++|.-|+-+|+.+|
T Consensus 167 L~s~--~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 167 LDSP--NIKTRKLALEILAALC 186 (187)
T ss_dssp --TT--SHHHHHHHHHHHHHHH
T ss_pred HCCC--CHHHHHHHHHHHHHHH
Confidence 9986 6889999999998886
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.53 E-value=8.6 Score=42.46 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=98.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+....+-+++...---+.+-++.+|.-+. ++++.+++=..++++..|..|+..++++- - ..+. ..-..
T Consensus 57 ~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l~-v-----~~i~-ey~~~ 124 (734)
T KOG1061|consen 57 CMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCLR-V-----DKIT-EYLCD 124 (734)
T ss_pred hcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeEe-e-----hHHH-HHHHH
Confidence 33445677777777888888888885443 45666666666667788999988877762 1 1111 22356
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+|..++.++ ++.+|+.++..+..|-. ...+.+.+.|++..|-.++...++.+.-.|+.+|..+....
T Consensus 125 Pl~~~l~d~--~~yvRktaa~~vakl~~--------~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 125 PLLKCLKDD--DPYVRKTAAVCVAKLFD--------IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHhccCC--ChhHHHHHHHHHHHhhc--------CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 888888886 67788888888887752 23445678999999999999889999999999999998754
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=86.79 E-value=5.4 Score=34.51 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHH
Q 016423 222 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 301 (390)
Q Consensus 222 ~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 301 (390)
-..+..|+-+|+..+.+... .+..|..-|+++ ++.++..|+.+|-.++. +..+.+...+.+..++..++
T Consensus 18 ~~~il~icd~I~~~~~~~k~-----a~raL~krl~~~--n~~vql~AL~lLd~~vk----Ncg~~f~~~i~s~~fl~~l~ 86 (133)
T cd03561 18 WALNLELCDLINLKPNGPKE-----AARAIRKKIKYG--NPHVQLLALTLLELLVK----NCGKPFHLQVADKEFLLELV 86 (133)
T ss_pred HHHHHHHHHHHhCCCCCHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----hCChHHHHHHhhHHHHHHHH
Confidence 45677888899887544333 345777778876 67899999999999986 44555777777878888899
Q ss_pred HhhcC---CChhHHHHHHHHHHHHHh
Q 016423 302 DLTAS---ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 302 ~lL~~---~d~~v~EkAL~aL~~L~~ 324 (390)
.++.. .+..++++++..+.+...
T Consensus 87 ~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 87 KIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99975 488999999998888775
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.49 E-value=34 Score=38.02 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC
Q 016423 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN 193 (390)
Q Consensus 114 ~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN 193 (390)
|+.-.++|-.++-.-++-++|..+-.++=-..=+|..-.+|..|-+ -|..+++.|+.+|..||+.++.-|
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~E----------kLeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE----------KLEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH----------hccCCCchHHHHHHHHHHHHHhhC
Confidence 4444555555543334455554443333222222333333444333 345688899999999999998888
Q ss_pred hHH
Q 016423 194 PLV 196 (390)
Q Consensus 194 p~~ 196 (390)
|+.
T Consensus 213 Pkn 215 (877)
T KOG1059|consen 213 PQN 215 (877)
T ss_pred Ccc
Confidence 863
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.41 E-value=6.4 Score=39.42 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=84.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHH--HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~--~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
+..|+.++.+.++.||..|+--+.+++.. +. +.|. ..--++.+.+++... +. -.-|++.+-++..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~-~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq------ 71 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GL-QSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQ------ 71 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--ch-hhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHh------
Confidence 45688899998899999999999998876 32 3332 223455566666654 22 5578999999984
Q ss_pred CCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
++..++.+.+. +++.++..+..+....-+.....|.+|++....++..+.
T Consensus 72 ~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~ 121 (353)
T KOG2973|consen 72 KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLT 121 (353)
T ss_pred hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHH
Confidence 66777777777 899999999888778888888888999887655555443
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.41 E-value=54 Score=35.72 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=94.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNN-p~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.-|.++.+.+-..|+.+||.++.=. |..+= -|.+..++.....+. ..++..++.++|.+|-.-.| +......|
T Consensus 101 ~aL~s~epr~~~~Aaql~aaIA~~Elp~~~w----p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN 175 (858)
T COG5215 101 RALKSPEPRFCTMAAQLLAAIARMELPNSLW----PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSN 175 (858)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHhhCccccc----hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhh
Confidence 5678999999999999999886431 10000 134455555555543 45788999999999988655 22222233
Q ss_pred --cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 247 --GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 247 --Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
-+.+....++.. ++..+|.-|+..|.+=+... ...+...-..+=+++.+++.-+.+|..++-+|..||.-|..
T Consensus 176 ~il~aiv~ga~k~e-t~~avRLaaL~aL~dsl~fv----~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~ 250 (858)
T COG5215 176 VILFAIVMGALKNE-TTSAVRLAALKALMDSLMFV----QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMM 250 (858)
T ss_pred HHHHHHHHhhcccC-chHHHHHHHHHHHHHHHHHH----HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHH
Confidence 234555555544 57788889998888833221 01111111122344556677788899999999999999987
Q ss_pred cC
Q 016423 325 LR 326 (390)
Q Consensus 325 ~~ 326 (390)
..
T Consensus 251 Ly 252 (858)
T COG5215 251 LY 252 (858)
T ss_pred HH
Confidence 53
|
|
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=86.26 E-value=17 Score=30.28 Aligned_cols=91 Identities=18% Similarity=0.146 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcH
Q 016423 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGAL 206 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l 206 (390)
.+...|.+....+++......+-.. .|.. -|.+.++.+.-.|..+|=.+++| ++.++..+.....+
T Consensus 16 p~~~~i~~i~d~~~~~~~~~~~~~~---~l~k----------Rl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~ 82 (115)
T cd00197 16 PDWPLIMEICDLINETNVGPKEAVD---AIKK----------RINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFA 82 (115)
T ss_pred CCHHHHHHHHHHHHCCCccHHHHHH---HHHH----------HhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHH
Confidence 3456777777777655333333332 2222 24567899999999999999999 57888888888777
Q ss_pred HHHHHhhcC------CCHHHHHHHHHHHHHH
Q 016423 207 SKLMKMVKS------SFVEEAVKALYTVSSL 231 (390)
Q Consensus 207 ~~Ll~LL~s------~~~~vr~kAL~ALSsL 231 (390)
..+++.... .+..||.|+++.+...
T Consensus 83 ~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 83 VELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 777664211 1357899998877643
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=85.88 E-value=6.5 Score=35.38 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=71.2
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHHhhcCCC-HHHHHHHHHHHHH---HhhCCccchHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSF-VEEAVKALYTVSS---LIRNNLAGQEMF 242 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~LL~s~~-~~vr~kAL~ALSs---LiR~~~~a~~~f 242 (390)
.+|+++++.-|+.++.+++..+++++. +.+.++ -++..|+.+|...+ ..+..-|+.+++. .++++|.-..++
T Consensus 32 ~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei 109 (165)
T PF08167_consen 32 SLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREI 109 (165)
T ss_pred HHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 588999999999999999999999842 445454 47899999998755 3455555555555 467788777776
Q ss_pred HHcCcH---HHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 243 YVEAGD---LMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 243 ~~~gGl---~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
...+.- +.+..++++ ......++.+|..++.
T Consensus 110 ~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 110 ATPNLPKFIQSLLQLLQD----SSCPETALDALATLLP 143 (165)
T ss_pred hhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHH
Confidence 654433 333333332 2345678888888875
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.46 E-value=8.9 Score=44.21 Aligned_cols=138 Identities=11% Similarity=0.009 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhc----CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 178 IRKISAWILGKASQNNPLVQKQVLEL----GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 178 vR~~Aa~vLgta~QNNp~~Q~~~le~----g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
--..+..+|.+++.-||.....|-.. |-++.+..++.... ..++.-|+..++ ++..|.++.......|-+..|.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~-~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVIL-LATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHH-HHhcccHHHHHHHhhhHHHHHH
Confidence 44568999999999999665544332 67888888886544 346666776665 4567788999998889899999
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhc
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~ 325 (390)
.+|.+. +..|..++-.|+.|.+ .+.+.....++|.+..+..++... +.+.+-.|...+.-|..+
T Consensus 1820 ~lLHS~---PS~R~~vL~vLYAL~S------~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1820 TLLHSQ---PSMRARVLDVLYALSS------NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHhcC---hHHHHHHHHHHHHHhc------CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 999975 5579999999999985 667777778888888888888665 667888888888877764
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=85.42 E-value=4.1 Score=33.38 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=53.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+...+..+.++..++|..++.-|+.+++.+. .......+.+.++...|+++ |..+--+|+..+..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~--DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE--DSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHH
Confidence 4566777887778899999999999999987 22222345677888888876 77788899999999985
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.41 E-value=34 Score=36.95 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=94.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.-|+.+.+.+|.....|+..++-+-. ..-. .-.++.+.+++++.+...+.+|.|++..+++++.- ..+.+.+-+
T Consensus 103 ~~~~tps~~~q~~~~~~l~~~~~~~~---~~~~-~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l 176 (569)
T KOG1242|consen 103 EELDTPSKSVQRAVSTCLPPLVVLSK---GLSG-EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFL 176 (569)
T ss_pred HhcCCCcHHHHHHHHHHhhhHHHHhh---ccCH-HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHH
Confidence 34567888899888888888755421 1111 12577888889877778899999999999998654 566777888
Q ss_pred HHHHHHhcCCChhHHHHHH-HHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc---CCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRK-AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---SADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~K-A~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---~~d~~v~EkAL~aL~~L~~ 324 (390)
..|...+++.+ ...++. +.+....++. +-++ ..+-.+++.+..+|. .....+|+.|..++.++..
T Consensus 177 ~~l~~ai~dk~--~~~~re~~~~a~~~~~~----~Lg~-----~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 177 DNLSKAIIDKK--SALNREAALLAFEAAQG----NLGP-----PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred HHHHHHhcccc--hhhcHHHHHHHHHHHHH----hcCC-----CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 88999888763 334554 4444444432 1232 234455555555554 4467999999999988886
Q ss_pred c
Q 016423 325 L 325 (390)
Q Consensus 325 ~ 325 (390)
.
T Consensus 246 ~ 246 (569)
T KOG1242|consen 246 C 246 (569)
T ss_pred h
Confidence 4
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.27 E-value=21 Score=36.36 Aligned_cols=199 Identities=13% Similarity=0.097 Sum_probs=118.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChH
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPL 195 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~ 195 (390)
.++-.++-+++ +|-++-|.+++.+..-...++-....|+. ++.++..-- ++--..++-+|.+....|-.+.+-.|.
T Consensus 129 ilklildcIgg-eddeVAkAAiesikrialfpaaleaiFeS--ellDdlhlr-nlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 129 ILKLILDCIGG-EDDEVAKAAIESIKRIALFPAALEAIFES--ELLDDLHLR-NLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred HHHHHHHHHcC-CcHHHHHHHHHHHHHHHhcHHHHHHhccc--ccCChHHHh-HHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 34444444444 34556666666666544444333332221 011111000 111234566888899999999999999
Q ss_pred HHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 016423 196 VQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 274 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~ 274 (390)
+-..+-+.|.+..|..=++... .-|+..++--.-.|..-+. +.+.+-..|-+..|..++...++++.-+-++..-...
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 9999999999998888887643 3456666665555543321 2223334556788888887554566666677766666
Q ss_pred HhhhhhhcCCCCCchhhhhcCchHHH-------HHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 275 LAKCQLENMHKVEPPLFRDRFFLKSV-------VDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 275 L~~~~l~~~~~~~~~~l~~~g~v~~L-------v~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+.. .... -.+.+.-+|+.+ .+++...|++.++.|..+|+.|-+..
T Consensus 284 ffg------keai-mdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 284 FFG------KEAI-MDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred Hhc------chHH-hhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 653 1111 112233334433 45557789999999999999987653
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=84.87 E-value=9.6 Score=37.38 Aligned_cols=112 Identities=17% Similarity=0.048 Sum_probs=78.9
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc
Q 016423 204 GALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 282 (390)
Q Consensus 204 g~l~~Ll-~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~ 282 (390)
+.+..|+ .-+.+.+..+|..|+-+++-.+=-++..... .+..+...++.+ +..++..|+..|.+++...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~--- 95 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKD--DEEVKITALKALFDLLLTH--- 95 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHc---
Confidence 4555555 5667777889999988888765544432222 246777778554 6679999999999999742
Q ss_pred CCCCCc-------hhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 283 MHKVEP-------PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 283 ~~~~~~-------~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+.... ...-...+.+.+...|.+.+.+++..|...+.-|.-.+
T Consensus 96 -g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 96 -GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred -CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 11111 12334678888899999999999999999998887654
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.19 E-value=24 Score=38.15 Aligned_cols=108 Identities=8% Similarity=0.128 Sum_probs=73.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-ccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~-~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
.+|.++.-+.+-.+.||..|..|+-++.|.. +.+.+.|.- +.|..++.. .=+-+.-++.++..|.. .
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llp----sll~~l~~~---kWrtK~aslellg~m~~-----~ 284 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLP----SLLGSLLEA---KWRTKMASLELLGAMAD-----C 284 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhh----hhHHHHHHH---hhhhHHHHHHHHHHHHH-----h
Confidence 4556666665556789999999999999984 445556542 222222222 23456778899998874 2
Q ss_pred CCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.+... .+.-..+++.+.+.|..+++.+++.+..||..+...
T Consensus 285 ap~qL-s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 285 APKQL-SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred chHHH-HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 23222 244568899999999999999999998888877653
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.66 E-value=50 Score=35.14 Aligned_cols=102 Identities=18% Similarity=0.250 Sum_probs=59.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
..+++..+|..||.+||+.+..-|. .+..+ -.+..++.-|.++ +.+|.-.|+.+|-.++-.-..-.-.++-.+.
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~---kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~i 343 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPD---KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNI 343 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcH---HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhH
Confidence 3568889999999999999999552 22333 2345555555544 3456544444444433221111111222233
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.--+..++.+. +.++|..|.+++..|..
T Consensus 344 alrlR~l~~se--~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 344 ALRLRTLFDSE--DDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHHHHHHHhc--ChhhhhhHHHHHHHHHH
Confidence 34456666665 56789999999999985
|
|
| >PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning | Back alignment and domain information |
|---|
Probab=83.14 E-value=8.3 Score=32.07 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHH-hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHh
Q 016423 177 DIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 255 (390)
Q Consensus 177 ~vR~~Aa~vLgta~QNNp~~Q~~~l-e~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL 255 (390)
+||.+|..=|-+=..++--+-..+. +.+.+..|+.-++.++.+....++.-|+.++++ |++...+...|+...|.++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHH
Confidence 5777776655555455544444444 446788888888888777788899889998876 88888889999999977765
Q ss_pred cCCChhHHHHHHHHHH
Q 016423 256 GNSSFEIRLHRKAVSL 271 (390)
Q Consensus 256 ~s~~~d~klr~KA~~L 271 (390)
..- ++.++...--+
T Consensus 81 ~~~--~~~~~~~id~i 94 (98)
T PF14726_consen 81 PNV--EPNLQAEIDEI 94 (98)
T ss_pred hcC--CHHHHHHHHHH
Confidence 432 45455554433
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=82.26 E-value=8.9 Score=33.26 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHH
Q 016423 223 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 302 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 302 (390)
..+-.|+-+|+..+.+.... +..|..=|.++ ++.++..|+.+|-.++. +..+.+...+.+.+++..|+.
T Consensus 19 ~~~l~icD~i~~~~~~~k~a-----~r~l~krl~~~--n~~v~l~AL~lLe~~vk----Ncg~~f~~ev~s~~fl~~L~~ 87 (133)
T smart00288 19 ELILEICDLINSTPDGPKDA-----VRLLKKRLNNK--NPHVALLALTLLDACVK----NCGSKFHLEVASKEFLNELVK 87 (133)
T ss_pred HHHHHHHHHHhCCCccHHHH-----HHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HCCHHHHHHHHhHHHHHHHHH
Confidence 44556788888775544333 34577777776 67899999999999996 345667777888999999999
Q ss_pred hhcCC-Chh-HHHHHHHHHHHHHh
Q 016423 303 LTASA-DLD-LQEKALAAIKNLLQ 324 (390)
Q Consensus 303 lL~~~-d~~-v~EkAL~aL~~L~~ 324 (390)
++... +.. ++++++..+.+-..
T Consensus 88 l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 88 LIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHH
Confidence 99876 334 99999988877664
|
Unpublished observations. Domain of unknown function. |
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=82.17 E-value=8.4 Score=33.96 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=75.9
Q ss_pred HHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCC
Q 016423 207 SKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285 (390)
Q Consensus 207 ~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~ 285 (390)
..+|.-..++.. +.--...-.|+-+|+..+.+.. ..+..|..=|.++ ++.++..|+.+|-.++. +.+.
T Consensus 6 ~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k-----~a~ral~krl~~~--n~~vql~AL~LLe~~vk----NCG~ 74 (142)
T cd03569 6 DELIEKATSELLGEPDLASILEICDMIRSKDVQPK-----YAMRALKKRLLSK--NPNVQLYALLLLESCVK----NCGT 74 (142)
T ss_pred HHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----HCCH
Confidence 334444444321 2233556668888887654422 3456777777775 67899999999999986 3456
Q ss_pred CCchhhhhcCchHHHHHhhcC-CChhHHHHHHHHHHHHHh
Q 016423 286 VEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL~~-~d~~v~EkAL~aL~~L~~ 324 (390)
.+...+.+.+++..++.++.. .+..|+++++..+.+-..
T Consensus 75 ~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 75 HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 677778899999999999974 588999999988887664
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.04 E-value=13 Score=39.34 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
|+.+|-..+....|..+.-++.+.++.......+-..||.. -|++.++.++..|..+|-+|+.| ..
T Consensus 5 ~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkK-------------Ri~~k~s~vq~lALtlLE~cvkNCG~ 71 (470)
T KOG1087|consen 5 LIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKK-------------RLNSKNSKVQLLALTLLETCVKNCGY 71 (470)
T ss_pred HHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHH-------------HhccCCcHHHHHHHHHHHHHHHhhhH
Confidence 44555444444456777777777777655444444444433 35777779999999999999999 56
Q ss_pred HHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHH
Q 016423 195 LVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSS 230 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s~--~~~vr~kAL~ALSs 230 (390)
.+...|.+.++++.++++.+.. +..||.|+|..|=.
T Consensus 72 ~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 72 SFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 6677899999999999999876 35789999877755
|
|
| >PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=81.16 E-value=7.3 Score=39.02 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHhcC--cHHHHHHhhcCCC---HHHHHHHHHHHHHHhhCCccchHHH
Q 016423 177 DIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQEMF 242 (390)
Q Consensus 177 ~vR~~Aa~vLgta~QNNp~~Q~~~le~g--~l~~Ll~LL~s~~---~~vr~kAL~ALSsLiR~~~~a~~~f 242 (390)
.+|-.|..++..+ ..++..+..+++.+ .+..|+.++..+. ..++..|+++|.+++++.+-..+-.
T Consensus 237 ~iRllAi~~l~~~-~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYI-HPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhh-CCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3555566666555 56788999999998 9999999998764 4689999999999999876655533
|
This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO. |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.03 E-value=60 Score=32.02 Aligned_cols=152 Identities=15% Similarity=0.123 Sum_probs=81.8
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh------h---------CCc
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI------R---------NNL 236 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLi------R---------~~~ 236 (390)
.+..+-||-.|+.++|... .| ..++.|-++.++...+|+.-+..||--+- . .+|
T Consensus 79 esq~pmvRhEAaealga~~--~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdP 147 (289)
T KOG0567|consen 79 ESQEPMVRHEAAEALGAIG--DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDP 147 (289)
T ss_pred cccchHHHHHHHHHHHhhc--ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCC
Confidence 5677889999999999985 22 23444445553333444443333333221 1 111
Q ss_pred cchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh----hhcC--CC-CC--------chhhhhcCchHHHH
Q 016423 237 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----LENM--HK-VE--------PPLFRDRFFLKSVV 301 (390)
Q Consensus 237 ~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~----l~~~--~~-~~--------~~~l~~~g~v~~Lv 301 (390)
.+. ...+-+.-|...|.+.+-..--|.+|.|.|+++=.+. +-++ .+ .. .-.+...-.++.|.
T Consensus 148 a~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~ 224 (289)
T KOG0567|consen 148 APP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLI 224 (289)
T ss_pred CCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHH
Confidence 111 1122344445554433223334556777777762211 0000 01 00 01123455677787
Q ss_pred HhhcC--CChhHHHHHHHHHHHHHhcChhHHHHHHhhCCc
Q 016423 302 DLTAS--ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339 (390)
Q Consensus 302 ~lL~~--~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL 339 (390)
..|.. .++-+|-.|+.||+.++. ++|...++...|-
T Consensus 225 k~L~d~~E~pMVRhEaAeALGaIa~--e~~~~vL~e~~~D 262 (289)
T KOG0567|consen 225 KVLLDETEHPMVRHEAAEALGAIAD--EDCVEVLKEYLGD 262 (289)
T ss_pred HHHHhhhcchHHHHHHHHHHHhhcC--HHHHHHHHHHcCC
Confidence 77754 378999999999999997 5788888765553
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.92 E-value=37 Score=37.68 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=56.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~ 236 (390)
++|++.++-+|..|+-+++.+-.-++ +.+...|.++.|-.++.++++.|...|+.|++.+.-.++
T Consensus 128 ~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 128 KCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 68899999999999999999977776 557788999999999997777888999999999877665
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=80.79 E-value=8.4 Score=43.51 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=87.1
Q ss_pred hCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHH-HcCcHHHHHHHhcCCChhHHHHHHHH
Q 016423 191 QNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAV 269 (390)
Q Consensus 191 QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~-~~gGl~~L~~lL~s~~~d~klr~KA~ 269 (390)
-+++-.++.|+. ..+|.|++...+.+...+..-+-|||..+.|-|. +...- -..-+++|.++|+-+ |+.+|..+.
T Consensus 855 ~~riLykQRfF~-~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~--D~~v~vstl 930 (1030)
T KOG1967|consen 855 EPRILYKQRFFC-DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMP--DVIVRVSTL 930 (1030)
T ss_pred chhHHHHHHHHH-hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCC--ccchhhhHh
Confidence 344566777764 4699999999966667788889999999986554 22211 234578889999876 666788999
Q ss_pred HHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCC---hhHHHHHHHHHHHHHh
Q 016423 270 SLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD---LDLQEKALAAIKNLLQ 324 (390)
Q Consensus 270 ~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d---~~v~EkAL~aL~~L~~ 324 (390)
.+|..++.+ .+..... .-..+++.+..+=.+.| .-+|+.|+.||..|..
T Consensus 931 ~~i~~~l~~-----~~tL~t~-~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 931 RTIPMLLTE-----SETLQTE-HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTR 982 (1030)
T ss_pred hhhhHHHHh-----ccccchH-HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 999998852 2222221 12345666666655554 5799999999999998
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.60 E-value=23 Score=37.15 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=107.9
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc----CCC-----HHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK----SSF-----VEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~----s~~-----~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
.+-...+..|..+++-+.||+-..+...-..+++..|++-+. .++ .+.-.....+|+|+++. |.+...|.
T Consensus 237 ~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl 315 (536)
T KOG2734|consen 237 AAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFL 315 (536)
T ss_pred cCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhh
Confidence 355667888999999999999889998888899999998874 221 13456888899999987 88899999
Q ss_pred HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCC--CCchhhhhcCchHHHHHhhc----------CCChhH
Q 016423 244 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK--VEPPLFRDRFFLKSVVDLTA----------SADLDL 311 (390)
Q Consensus 244 ~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~--~~~~~l~~~g~v~~Lv~lL~----------~~d~~v 311 (390)
...|++...-.++.. ...+--|...|-+.+. +++ ..+..+++.+-++.+..++- ..-.+.
T Consensus 316 ~~EGlqLm~Lmlr~K---k~sr~SalkvLd~am~-----g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~ 387 (536)
T KOG2734|consen 316 KGEGLQLMNLMLREK---KVSRGSALKVLDHAMF-----GPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEH 387 (536)
T ss_pred ccccHHHHHHHHHHH---HHhhhhHHHHHHHHHh-----CCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHH
Confidence 999999888877764 2346667777877775 233 45667788777777776663 123477
Q ss_pred HHHHHHHHHHHHh
Q 016423 312 QEKALAAIKNLLQ 324 (390)
Q Consensus 312 ~EkAL~aL~~L~~ 324 (390)
-|++...|+++..
T Consensus 388 eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 388 EEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888875
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.36 E-value=16 Score=35.30 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHhcCc---HHHHHHhhcCCC--HHHHHHHHHHHHHHhhCCccchHHHH-HcCcHH
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLELGA---LSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDL 249 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~---l~~Ll~LL~s~~--~~vr~kAL~ALSsLiR~~~~a~~~f~-~~gGl~ 249 (390)
..=|...+-.|=.+.-.+|+.+..|++... +=+.+...++.+ .-+|..++..|+++++|..+-...|. ...-++
T Consensus 113 ~snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 113 ESNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred hhhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 344555455555555778999999998752 222333333333 34789999999999999777666665 456788
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC----chhhhh----cCchHHHHHhh-cCCChhHHHHHHHHHH
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE----PPLFRD----RFFLKSVVDLT-ASADLDLQEKALAAIK 320 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~----~~~l~~----~g~v~~Lv~lL-~~~d~~v~EkAL~aL~ 320 (390)
.+.+++... +.--+.-|+|.+.-++- +..- ++.+.. ..+...++..+ +.+...+..++++|-.
T Consensus 193 LcLrIme~g--SElSktvaifI~qkil~------dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYl 264 (315)
T COG5209 193 LCLRIMELG--SELSKTVAIFIFQKILG------DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYL 264 (315)
T ss_pred HHHHHHHhh--hHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHhe
Confidence 889988765 33346677888777762 2221 222211 23344444333 4456788888888877
Q ss_pred HHHhcChhHHHHHH
Q 016423 321 NLLQLRTTEALVLK 334 (390)
Q Consensus 321 ~L~~~~~~~r~~~~ 334 (390)
.|... +..|..++
T Consensus 265 RLsd~-p~aR~lL~ 277 (315)
T COG5209 265 RLSDK-PHARALLS 277 (315)
T ss_pred eecCC-HhHHHHHh
Confidence 76653 34555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 1e-29
Identities = 56/263 (21%), Positives = 103/263 (39%), Gaps = 28/263 (10%)
Query: 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------- 168
++K + L P ++ + AL+ L L E +DNA
Sbjct: 29 QMKSCLRVLSQPMPP------TAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSG 82
Query: 169 ------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA- 221
L +R +A ++G SQN +Q+QVL LGAL KL++++ +
Sbjct: 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142
Query: 222 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 281
VKAL+ +S L+R AG F G +L + +++ K+ L+ +L E
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK--VKSAFLLQNLLVGHPE 200
Query: 282 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ-LRTTEALVLKDFCGLD 340
+ + ++ +V L + E L A+ +L+ + GL+
Sbjct: 201 HKGTL-----CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLE 255
Query: 341 TALERLRQQLQEVMLEEDQRDYA 363
L Q LQ+ +++ ++
Sbjct: 256 ELLRHRCQLLQQHEEYQEELEFC 278
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 8e-10
Identities = 46/292 (15%), Positives = 101/292 (34%), Gaps = 23/292 (7%)
Query: 44 AKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQ 103
AK + + D A+ + S++ +++ I ++ + Q +
Sbjct: 24 AKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVK-GINSNNLESQLQATQAAR 82
Query: 104 RLSPSELKKRQMEIKE------LMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQEL 157
+L E + I + L + + + L N + +A+ +
Sbjct: 83 KLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG 142
Query: 158 LILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 217
+ I L P I + + W LG + + + V++ GA+ L+ ++
Sbjct: 143 GAIPAFISL----LASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 198
Query: 218 VEEAVK-----ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 272
+ +T+S+L RN + VE L +L ++ E+ + +
Sbjct: 199 LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD--SCWAI 256
Query: 273 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324
L E + V + + +V L + +L + AL AI N++
Sbjct: 257 SYLTDGPNERIEMV-----VKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 31/176 (17%), Positives = 73/176 (41%), Gaps = 7/176 (3%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 231 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 290
++ + + +L N I+ ++A + ++ + + + +V
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 354
Query: 291 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 346
+ + +V + + AD Q++A AI N T E +V CG+ L L
Sbjct: 355 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 409
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 38/211 (18%), Positives = 81/211 (38%), Gaps = 18/211 (8%)
Query: 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQE---LLILVEPIDNANGQLNH 173
+ +E LK + L + L N R + + + I +E L+
Sbjct: 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE-------LLSS 118
Query: 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLI 232
D+++ + W LG + ++ + + VL+ L L+++ + + A++ +S+L
Sbjct: 119 EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178
Query: 233 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 292
R E V +L +L S ++ A + L+ + + V
Sbjct: 179 RGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD--ACWALSYLSDGPNDKIQAV-----I 231
Query: 293 DRFFLKSVVDLTASADLDLQEKALAAIKNLL 323
D + +V+L D + AL A+ N++
Sbjct: 232 DAGVCRRLVELLMHNDYKVVSPALRAVGNIV 262
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 6/155 (3%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L H D + + +G + + + +L AL L+ ++ S +A +T+S+
Sbjct: 243 LMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302
Query: 231 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 290
+ N A + L IL + F R ++A + + K
Sbjct: 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTR--KEAAWAITNATSGGSAEQIK----Y 356
Query: 291 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325
+ +K + DL D + + AL ++N+L+L
Sbjct: 357 LVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 8e-08
Identities = 36/237 (15%), Positives = 83/237 (35%), Gaps = 25/237 (10%)
Query: 117 IKELMEKLKTPSDAQLIQIAIDDLNN------STLSLEDSQRALQELLILVEPIDNANGQ 170
+ L++ + + + A+ L+N L L L
Sbjct: 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL---------- 200
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L DTD+ + W L S + V++ G +L++++ + + AL V +
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ + ++ + L L +L + I+ ++A + ++ + V
Sbjct: 261 IVTGDDIQTQVI-LNCSALQSLLHLLSSPKESIK--KEACWTISNITAGNRAQIQTV--- 314
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 346
D +++ + +A+ +++A AI N + E + G L L
Sbjct: 315 --IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 369
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 5e-09
Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYT 227
L+ P+ I + + W L + + V++ GAL L++++ S ++EA+ AL
Sbjct: 63 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122
Query: 228 VSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 286
++S + ++AG L L +L + + +I ++A+ + ++A E + V
Sbjct: 123 IASGGNEQIQ----AVIDAGALPALVQLLSSPNEQIL--QEALWALSNIASGGNEQIQAV 176
Query: 287 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324
D L ++V L +S + + ++AL A+ N+
Sbjct: 177 -----IDAGALPALVQLLSSPNEQILQEALWALSNIAS 209
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 43/249 (17%), Positives = 101/249 (40%), Gaps = 33/249 (13%)
Query: 87 IGHSDPAKLKETAQDVQRLSPSELKKRQMEIKE-----LMEKLKTPSDAQLIQ------- 134
+ D + + ++ ++ Q I L++ L +P++ L +
Sbjct: 21 LNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 80
Query: 135 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNP 194
IA ++ AL L+ L L+ P+ I + + W L +
Sbjct: 81 IASGGNEQIQAVIDA--GALPALVQL----------LSSPNEQILQEALWALSNIASGGN 128
Query: 195 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQD 253
+ V++ GAL L++++ S + +AL+ +S++ + ++AG L L
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV-IDAGALPALVQ 187
Query: 254 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 313
+L + + +I ++A+ + ++A E V+ + L+ + L + + +Q+
Sbjct: 188 LLSSPNEQIL--QEALWALSNIASGGNEQKQAVK-----EAGALEKLEQLQSHENEKIQK 240
Query: 314 KALAAIKNL 322
+A A++ L
Sbjct: 241 EAQEALEKL 249
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-08
Identities = 42/280 (15%), Positives = 97/280 (34%), Gaps = 18/280 (6%)
Query: 51 PRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRL----- 105
P +D+ +++ D + M Q + D + +++
Sbjct: 61 PTDGADSDEEDESSVSADQQFYSQLQQELPQMTQ-QLNSDDMQEQLSATVKFRQILSREH 119
Query: 106 -SPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI 164
P ++ + + L+E ++ L A L N + + + + I
Sbjct: 120 RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 179
Query: 165 DNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKA 224
L ++++ + W LG + ++ + VL+ A+ ++ + S+ A
Sbjct: 180 Q----LLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA 235
Query: 225 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 284
+T+S+L R + V L ++ + E + A + L+ E +
Sbjct: 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD--ACWAISYLSDGPQEAIQ 293
Query: 285 KVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324
D K +V+L + +Q AL A+ N++
Sbjct: 294 -----AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 6e-06
Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 7/154 (4%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
+ DT+ + W + S + V+++ +L++++ AL V +
Sbjct: 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325
Query: 231 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 290
++ N ++ L+ +L + I+ ++A + ++ E + V
Sbjct: 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIK--KEACWTISNITAGNTEQIQAV---- 379
Query: 291 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324
D + +V L A+ +++A AI N
Sbjct: 380 -IDANLIPPLVKLLEVAEYKTKKEACWAISNASS 412
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-05
Identities = 37/257 (14%), Positives = 87/257 (33%), Gaps = 35/257 (13%)
Query: 87 IGHSDPAKLKETAQDVQRLSPSELKKRQMEIK--------ELM----EKLKTPSDAQLIQ 134
I D L + + LS + Q I EL+ ++TP+ +
Sbjct: 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325
Query: 135 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNP 194
I + + + + L L +L L+ P +I+K + W + + N
Sbjct: 326 IVTGNDLQTQVVIN--AGVLPALRLL----------LSSPKENIKKEACWTISNITAGNT 373
Query: 195 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR--NNLAGQEMFYVEAGDL-ML 251
+ V++ + L+K+++ + + +A + +S+ + V G + L
Sbjct: 374 EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 433
Query: 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP------LFRDRFFLKSVVDLTA 305
D+L + I + + ++ K + ++ + +
Sbjct: 434 CDLLEIADNRII--EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ 491
Query: 306 SADLDLQEKALAAIKNL 322
+ + + EKA I+
Sbjct: 492 NENDKIYEKAYKIIETY 508
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 35/248 (14%), Positives = 81/248 (32%), Gaps = 31/248 (12%)
Query: 87 IGHSDPAKLKETAQDVQRLSPSELKKRQME-----IKELMEKLKTPSDAQLIQIAIDDLN 141
+ D + + A V +LS E + + + ++ ++ +D + + L+
Sbjct: 26 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLH 85
Query: 142 NSTLSLEDSQR-------ALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNP 194
N LS + L+ + L P + + L +
Sbjct: 86 N--LSHHREGLLAIFKSGGIPALVKM----------LGSPVDSVLFYAITTLHNLLLHQE 133
Query: 195 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 254
+ V G L K++ ++ + V+ + L N + + G L +I
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193
Query: 255 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 314
+ ++E L ++ L+ C N P + ++++ L +
Sbjct: 194 MRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAGGMQALGLHLTDPSQRLVQN 246
Query: 315 ALAAIKNL 322
L ++NL
Sbjct: 247 CLWTLRNL 254
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 12/172 (6%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-----FVEEAVKAL 225
L D ++ +A IL + NN + V ++G + L++ V + E A+ AL
Sbjct: 275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334
Query: 226 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285
++S + Q + G ++ +L S + V L+ +LA C N
Sbjct: 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK-ATVGLIRNLALCP-ANHAP 392
Query: 286 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFC 337
+ R++ + +V L A D Q + + + + C
Sbjct: 393 L-----REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 439
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 38/271 (14%), Positives = 83/271 (30%), Gaps = 52/271 (19%)
Query: 87 IGHSDPAKLKETAQDVQRLSPSELKKRQMEIKE-----LMEKLKTPSDAQLIQI----AI 137
+G D + A + L+ + K + M + L+ + D + I A+
Sbjct: 275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334
Query: 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQ 197
L + E +Q A++ L + L+ P + L + P
Sbjct: 335 RHLTSRHQEAEMAQNAVRLHYGL-PVVVKL---LHPPSHWPLIKATVGLIRNLALCPANH 390
Query: 198 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM------- 250
+ E GA+ +L++++ + + + + E +
Sbjct: 391 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450
Query: 251 --------------LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-----PPLF 291
+L + I+ R A ++ +LA+ + E +E PL
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQ--RVAAGVLCELAQDK-EAAEAIEAEGATAPL- 506
Query: 292 RDRFFLKSVVDLTASADLDLQEKALAAIKNL 322
+L S + + A A + +
Sbjct: 507 ---------TELLHSRNEGVATYAAAVLFRM 528
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 3e-08
Identities = 66/448 (14%), Positives = 140/448 (31%), Gaps = 133/448 (29%)
Query: 27 RAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSS-IDGMLQW 85
+ +V +FW K ++ + ++D ++S D
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNS--------PETVLEMLQKLLYQIDPNWTSRSDHSS-- 221
Query: 86 AIGHSDPAKLKETAQDVQRLSPSELKKRQMEI------KELMEK-------LKTPSDAQL 132
+ ++ +++RL S+ + + + + L T Q+
Sbjct: 222 ----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 133 IQIAIDDLNNST---LSLEDSQRALQE---LLILVEPIDNANGQL--------------- 171
D L+ +T +SL+ L +L++ +D L
Sbjct: 278 ----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 172 -----NHPDT-------DIRKISAWILGKASQNN--PLVQKQVLELGAL--------SKL 209
+ T + K++ I ++S N P +++ + ++ + L
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 210 MKMV----KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLH 265
+ ++ S V V L+ S + + + + + L ++ E LH
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISIPSIYL-ELKVKLENEYALH 446
Query: 266 RKAVSLV--------GDLAKCQLEN---------MHKVEP----PLFRDRF----FLKSV 300
R V DL L+ + +E LFR F FL+
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 301 VDLTASADLDLQEKALAAIKNLLQ-LR-----------TTEALV--LKDF---CGLDTAL 343
+ ++A A +I N LQ L+ E LV + DF +
Sbjct: 507 IRHDSTA-----WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 344 ERLRQQLQEVMLEEDQRDYAMDVEALRR 371
+ L+ ++ ED+ + + ++R
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 5e-06
Identities = 57/426 (13%), Positives = 116/426 (27%), Gaps = 123/426 (28%)
Query: 39 LFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKET 98
LFW+ + V + ++ F M P+ +
Sbjct: 67 LFWTL-----------LSKQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRM 111
Query: 99 -AQDVQRL--SPSELKKRQMEIKELMEKLKTP----SDAQLIQI-----------AIDDL 140
+ RL K + + KL+ A+ + I A+D
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 141 NNS-------------TLSLEDSQRA----LQELLILVEPIDNANGQLNHPDTDIRKISA 183
+ L +S LQ+LL ++P N + +H +I +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHS 229
Query: 184 W------ILGKASQNNPL-----VQ-KQVLE---LGALSKLMKMVKSSFVEEAVKALYTV 228
+L N L VQ + L K++ + V + + A T
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CKILLTTRFKQVTDFLSAATTT 287
Query: 229 SSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIR-----LHRKAVSLVGDLAK---CQL 280
+ ++ + +L L ++ + + +S++ + +
Sbjct: 288 HISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 281 ENMHKV----------------EPPLFRDRF-----FLKSVVDLTAS------ADLDLQE 313
+N V EP +R F F S + D+ +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFDVIKSD 403
Query: 314 KALAAIKNLLQLRTTEALVLKDFCG---------LDTALERL-RQQLQEVMLEEDQRDYA 363
+ + N L + LV K L+ ++ L +++
Sbjct: 404 VMV--VVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 364 MDVEAL 369
D + L
Sbjct: 459 FDSDDL 464
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-08
Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
LN PD + + L + + + V++ GAL L++++ S + +AL+ +S+
Sbjct: 21 LNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 80
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-- 287
+ Q ++AG L L +L + + +I ++A+ + ++A E + V
Sbjct: 81 IASGG-NEQIQAVIDAGALPALVQLLSSPNEQIL--QEALWALSNIASGGNEQIQAVIDA 137
Query: 288 ---PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALE 344
P L V L +S + + ++AL A+ N+ + +K+ L+ LE
Sbjct: 138 GALPAL----------VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE-KLE 186
Query: 345 RL 346
+L
Sbjct: 187 QL 188
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 4e-06
Identities = 31/158 (19%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+ P+ I + + W L + + V++ GAL L++++ S + +AL+ +S+
Sbjct: 63 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-- 287
+ Q ++AG L L +L + + +I ++A+ + ++A E V+
Sbjct: 123 IASGGNE-QIQAVIDAGALPALVQLLSSPNEQIL--QEALWALSNIASGGNEQKQAVKEA 179
Query: 288 ---PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322
L L + + +Q++A A++ L
Sbjct: 180 GALEKL----------EQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYT 227
L+ P+ I + + W L + ++ V E GAL KL ++ +EA +AL
Sbjct: 147 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206
Query: 228 VSS 230
+ S
Sbjct: 207 LQS 209
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 9e-08
Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 27/241 (11%)
Query: 90 SDPAKLKETAQDVQRLSPSELKKRQM----EIKELMEKLKTPSDAQLIQIAIDDLNNSTL 145
+D + TA + LS + I L++ L +P D+ L AI L+N L
Sbjct: 69 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFY-AITTLHNLLL 127
Query: 146 SLEDSQRALQE---LLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 202
E ++ A++ L +V LN + I+ L + N + +L
Sbjct: 128 HQEGAKMAVRLAGGLQKMVA-------LLNKTNVKFLAITTDCLQILAYGNQESKLIILA 180
Query: 203 LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFE 261
G L+ ++++ E+ + V ++ + + VEAG + L L + S
Sbjct: 181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI-VEAGGMQALGLHLTDPSQR 239
Query: 262 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 321
+ + L N+ L ++V L S D+++ A + N
Sbjct: 240 LVQN----------CLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289
Query: 322 L 322
L
Sbjct: 290 L 290
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 6e-07
Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 12/172 (6%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-----FVEEAVKAL 225
L D ++ +A IL + NN + V ++G + L++ V + E A+ AL
Sbjct: 272 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331
Query: 226 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285
++S + Q + G ++ +L S + V L+ +LA C N
Sbjct: 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK-ATVGLIRNLALCP-ANHAP 389
Query: 286 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFC 337
+ R++ + +V L A D Q + + + + C
Sbjct: 390 L-----REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 436
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 4e-07
Identities = 29/213 (13%), Positives = 69/213 (32%), Gaps = 26/213 (12%)
Query: 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQR-------ALQELLILVEPIDNANG 169
+ ++ ++ +D + + L+N LS + L+ +
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHN--LSHHREGLLAIFKSGGIPALVNM--------- 242
Query: 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS 229
L P + + L + + V G L K++ ++ + V+ +
Sbjct: 243 -LGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301
Query: 230 SLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
L N + + G L +I+ ++E L ++ L+ C N P
Sbjct: 302 ILAYGNQESKLIILASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KP 354
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322
+ ++++ L + L ++NL
Sbjct: 355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 22/215 (10%)
Query: 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLS-LEDSQRALQELLILVEPIDNANGQLNHPD 175
++ L L PS + TL L D+ + + L+ + L D
Sbjct: 362 MQALGLHLTDPSQRLVQNCL------WTLRNLSDAATKQEGMEGLLGTLVQL---LGSDD 412
Query: 176 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSS 230
++ +A IL + NN + V ++G + L++ V + E A+ AL ++S
Sbjct: 413 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472
Query: 231 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 290
++ Q + G ++ +L S + V L+ +LA C N +
Sbjct: 473 RHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA-TVGLIRNLALCP-ANHAPL---- 526
Query: 291 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325
R++ + +V L A D Q + +
Sbjct: 527 -REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 560
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 5e-05
Identities = 47/304 (15%), Positives = 103/304 (33%), Gaps = 34/304 (11%)
Query: 66 VNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLK 125
V++ + Q + D AQ V+ E M+I
Sbjct: 57 VDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSA 116
Query: 126 TPSD-------AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDI 178
P++ +Q+++ A+ +L N E + RA+ EL L LN D +
Sbjct: 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKL----------LNDEDQVV 166
Query: 179 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF----VEEAVKALYTVSSLIRN 234
+A ++ + S+ + +S +++ ++++ L+ +S
Sbjct: 167 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH---- 222
Query: 235 NLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 293
+ G ++G + L ++LG+ + H A++ + +L Q R
Sbjct: 223 HREGLLAI-FKSGGIPALVNMLGSPVDSVLFH--AITTLHNLLLHQEGA-----KMAVRL 274
Query: 294 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV 353
L+ +V L ++ ++ L L++ G + +R E
Sbjct: 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 334
Query: 354 MLEE 357
+L
Sbjct: 335 LLWT 338
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-05
Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 10/161 (6%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+ D + I A+ + + ++QV +LG + KL+ +++S A + +
Sbjct: 11 LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRN 70
Query: 231 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE--- 287
L+ + + + G +L + + ++ L+ +L+ +
Sbjct: 71 LVFRSTTNKLETRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIADAL 129
Query: 288 PPLFR------DRFFLKSVVDLTASADLDLQEKALAAIKNL 322
P L + + D ++ A ++NL
Sbjct: 130 PVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL 170
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 16/133 (12%), Positives = 50/133 (37%), Gaps = 15/133 (11%)
Query: 111 KKRQMEIKELMEKLKTPSDAQLIQI-AIDDLNNSTLSLEDSQRALQELL---ILVEPIDN 166
+M ++ + L+ A + + ++++ + +L L++
Sbjct: 4 ADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQ---- 59
Query: 167 ANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----FVEEAV 222
L + D+++ L + + +V EL + +L++++K + ++
Sbjct: 60 ---LLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQIT 116
Query: 223 KALYTVSSLIRNN 235
L+ +SS +
Sbjct: 117 GLLWNLSSNDKLK 129
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 100.0 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.8 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.79 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.77 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.77 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.73 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.72 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.7 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.67 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.67 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.67 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.66 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.64 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.64 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.64 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.63 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.63 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.62 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.61 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.61 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.61 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.59 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.58 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.58 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.53 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.49 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.48 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.47 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.47 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.44 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.42 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.42 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.37 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.34 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.32 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.3 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.18 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.98 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 98.76 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.73 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.73 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.54 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.53 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.32 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.3 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.29 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.25 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.25 | |
| 3qml_C | 315 | Protein SLS1, nucleotide exchange factor SIL1; arm | 98.2 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.17 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.15 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.09 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.0 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.99 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 97.98 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.89 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 97.85 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.84 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.79 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 97.77 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.71 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 97.68 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.6 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.56 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.56 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.45 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.35 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.34 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.29 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.28 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 97.27 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.09 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.05 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.96 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 96.95 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.57 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 96.35 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 96.22 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 95.81 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 95.52 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 95.42 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 95.13 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 94.87 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 94.37 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 94.27 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 94.18 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 94.13 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 93.86 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 93.8 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 93.71 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 93.68 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 93.25 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 93.14 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 93.11 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 93.0 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 92.86 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 92.05 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 92.01 | |
| 1elk_A | 157 | Target of MYB1; superhelix of helices, endocytosis | 91.34 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 90.68 | |
| 1dvp_A | 220 | HRS, hepatocyte growth factor-regulated tyrosine k | 90.61 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.44 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 89.94 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 89.85 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 89.73 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 89.54 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 88.48 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 88.07 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 87.64 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 87.05 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 86.62 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 86.17 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.13 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 84.91 | |
| 3rru_A | 152 | TOM1L1 protein; structural genomics, PSI-biology, | 84.65 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 84.47 | |
| 3qml_C | 315 | Protein SLS1, nucleotide exchange factor SIL1; arm | 84.1 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 83.83 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 83.79 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 83.26 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 81.66 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 81.48 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 81.26 |
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=294.42 Aligned_cols=241 Identities=23% Similarity=0.262 Sum_probs=202.0
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHhhccccccc------------c-c
Q 016423 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNS----------TLSLEDSQRALQELLILVEPIDNAN------------G-Q 170 (390)
Q Consensus 114 ~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~----------~~s~e~~~~aLd~Le~lve~IDnAn------------~-l 170 (390)
..||.++|+ ++++|+++||+++.+|.++ +.+.++|..||+.|.++++++|||+ . +
T Consensus 13 ~~~~~~~~~--~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~l 90 (296)
T 1xqr_A 13 LVPRGSHMR--GQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY 90 (296)
T ss_dssp -------CC--SCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTT
T ss_pred hHHHHHHHc--CCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHH
Confidence 468898886 5699999999999999997 4567899999999999999999998 6 9
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
|.++++.||..|+|+||++++|||.+|+.+++.|++|+|+.+|+++ +..++.+|+||||+++|+++++++.|...||++
T Consensus 91 L~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~ 170 (296)
T 1xqr_A 91 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS 170 (296)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999999965 678999999999999999999999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhH
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE 329 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~ 329 (390)
+|+.+|+++ +.+++++|+|+|++|+. .+++.+..+++.|+++.|+.+|.+++.+++++|+.+|.+|+...+..
T Consensus 171 ~L~~lL~~~--d~~v~~~A~~aLs~L~~-----~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 171 VLMRAMQQQ--VQKLKVKSAFLLQNLLV-----GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHHSS--CHHHHHHHHHHHHHHHH-----HCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHHh-----CChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 999999986 78899999999999995 46788899999999999999999999999999999999999864332
Q ss_pred HHHHHhhCCc-HHHHHHHHHHHHHhhh---hhhhhhhHHHH
Q 016423 330 ALVLKDFCGL-DTALERLRQQLQEVML---EEDQRDYAMDV 366 (390)
Q Consensus 330 r~~~~~~~gL-~~~L~~Lr~~l~el~~---~e~~~ey~~dl 366 (390)
...++ .. ......|+..++.+.. .+|..+|+..|
T Consensus 244 ~~~~~---~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~i 281 (296)
T 1xqr_A 244 VRECR---EPELGLEELLRHRCQLLQQHEEYQEELEFCEKL 281 (296)
T ss_dssp HHHHH---CGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHh---ccHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 22222 22 1234555555666552 24556666555
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=157.18 Aligned_cols=171 Identities=18% Similarity=0.181 Sum_probs=152.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|+++++.+|..|+|+|++++..++..+..+++.|++|.|+.+|.+++..++..|+++|++++.+++.....+.+.||+
T Consensus 19 ~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 98 (210)
T 4db6_A 19 QQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCH
Confidence 47899999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 328 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~ 328 (390)
+.|+.+|.++ +..++..|+++|.+|+. .++.....+.+.|+++.|+.+|.+++..+++.|+.+|.+|+..++.
T Consensus 99 ~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 99 PALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCC--cHHHHHHHHHHHHHHHc-----CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 9999999987 67899999999999994 4555667788999999999999999999999999999999998667
Q ss_pred HHHHHHhhCCcHHHHHHH
Q 016423 329 EALVLKDFCGLDTALERL 346 (390)
Q Consensus 329 ~r~~~~~~~gL~~~L~~L 346 (390)
.+..+...+++..++..|
T Consensus 172 ~~~~~~~~g~i~~L~~ll 189 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQ 189 (210)
T ss_dssp HHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 777776444455555444
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-18 Score=155.66 Aligned_cols=171 Identities=18% Similarity=0.206 Sum_probs=151.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
++|.++++.+|..|+++|++++.+++..+..+.+.|++|.|+.++.+++..++..|+++|++++.+++.....+...|++
T Consensus 51 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 130 (252)
T 4hxt_A 51 KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGV 130 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 57888899999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 328 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~ 328 (390)
+.|+.+|.++ +..++..++++|.+|+. .++.....+.+.|+++.|+.+|.+++..+++.|+.+|.+|+...+.
T Consensus 131 ~~L~~~l~~~--~~~~~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 203 (252)
T 4hxt_A 131 EVLVKLLTST--DSEVQKEAARALANIAS-----GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS 203 (252)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHH
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHc-----CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999986 67799999999999994 3455567888999999999999999999999999999999986666
Q ss_pred HHHHHHhhCCcHHHHHHH
Q 016423 329 EALVLKDFCGLDTALERL 346 (390)
Q Consensus 329 ~r~~~~~~~gL~~~L~~L 346 (390)
.++.+...+++..++..|
T Consensus 204 ~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 204 AIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 666676444445554444
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=150.62 Aligned_cols=149 Identities=16% Similarity=0.235 Sum_probs=138.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.++++.+|..|+|+|++++.+++..+..+++.|++|.|+.+|++.+..++..|+++|++++.+++.....+.+.|++
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 140 (210)
T 4db6_A 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+.|+.+|.++ +..++..|+++|.+|+. .++..+..+.+.|+++.|+.++.+++..++++|+.+|.+|..
T Consensus 141 ~~L~~ll~~~--~~~v~~~a~~aL~~l~~-----~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 141 PALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHHT-----SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHc-----CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999986 67899999999999994 346667788999999999999999999999999999999874
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-18 Score=156.00 Aligned_cols=171 Identities=17% Similarity=0.205 Sum_probs=150.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.++++.+|..|+++|++++.+++..+..+++.|++|.|+.+|++++..++..|+++|++++.+.+.....+...||+
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 140 (252)
T 4db8_A 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCH
Confidence 57788889999999999999999999999999999999999999999889999999999999999877766889999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 328 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~ 328 (390)
+.|+.+|.++ +..++..|+++|.+|+. .++.....+.+.|+++.|+.+|.+++..+++.|+.+|.+|+...+.
T Consensus 141 ~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 213 (252)
T 4db8_A 141 PALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 213 (252)
T ss_dssp HHHHHGGGCS--CHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHc-----CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 9999999986 67899999999999994 3455667788999999999999999999999999999999977666
Q ss_pred HHHHHHhhCCcHHHHHHH
Q 016423 329 EALVLKDFCGLDTALERL 346 (390)
Q Consensus 329 ~r~~~~~~~gL~~~L~~L 346 (390)
.+..+...+++..++..|
T Consensus 214 ~~~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 214 QKQAVKEAGALEKLEQLQ 231 (252)
T ss_dssp HHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHCCcHHHHHHHh
Confidence 666666444455554444
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=151.15 Aligned_cols=175 Identities=13% Similarity=0.148 Sum_probs=150.7
Q ss_pred ccCCCCCh--HHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~--~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
++|.++++ .++..|+++|.+++.+|+..+..+.+.|++|+|+++|++++..++..|+|||.+|..+++.+...+.++|
T Consensus 15 ~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~G 94 (233)
T 3tt9_A 15 SMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELN 94 (233)
T ss_dssp HTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 47888887 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc----------------CCChh
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA----------------SADLD 310 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~----------------~~d~~ 310 (390)
|++.|+.+|.+. .+..++..|+.+|.+|.. .+..+..+.+. .++.|++++. ..+.+
T Consensus 95 aI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS~------~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 95 GVPRLLQVLKQT-RDLETKKQITGLLWNLSS------NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHT------SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred CHHHHHHHHccC-CCHHHHHHHHHHHHHHHc------ChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999842 156789999999999984 55666777764 5888888763 13679
Q ss_pred HHHHHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHHH
Q 016423 311 LQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQ 351 (390)
Q Consensus 311 v~EkAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l~ 351 (390)
+++.|..||.+|...+++.|+.++...|+ +.++..|+....
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~ 208 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA 208 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh
Confidence 99999999999998777899999866676 777787776554
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=146.06 Aligned_cols=171 Identities=17% Similarity=0.197 Sum_probs=152.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+|.++++++|..|+++|++++.+++..+..+.+.|++|.|+.++.+++..++..|+++|++++.+++.....+...||++
T Consensus 10 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 89 (252)
T 4hxt_A 10 LLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 89 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 57788899999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhH
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE 329 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~ 329 (390)
.|+.+|.++ +..++..|+++|.+|+. .+++.+..+.+.|+++.++.+|.+++..++..++.+|.+|+...+..
T Consensus 90 ~l~~ll~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 90 VLVKLLTST--DSEVQKEAARALANIAS-----GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHHHHTTCS--SHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 999999976 67899999999999994 45667778889999999999999999999999999999999876666
Q ss_pred HHHHHhhCCcHHHHHHHH
Q 016423 330 ALVLKDFCGLDTALERLR 347 (390)
Q Consensus 330 r~~~~~~~gL~~~L~~Lr 347 (390)
+..+...+.+..++..|+
T Consensus 163 ~~~~~~~~~i~~L~~ll~ 180 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLT 180 (252)
T ss_dssp HHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHC
Confidence 566664555566666554
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=145.72 Aligned_cols=183 Identities=16% Similarity=0.203 Sum_probs=153.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhccc-ccc------c------ccCCCCChHHHHHHHHHHHHHhhCChHHHHH
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNA------N------GQLNHPDTDIRKISAWILGKASQNNPLVQKQ 199 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~I-DnA------n------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~ 199 (390)
+...+..+.+++ .+-+..|+..|..+...- ++. + .+|+++++.+|..|+|+|++++.+++..+..
T Consensus 56 i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (252)
T 4db8_A 56 LPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (252)
T ss_dssp HHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH
Confidence 344455555443 555566666666665421 111 1 6788899999999999999999998877788
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh
Q 016423 200 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 279 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~ 279 (390)
+.+.|++|.|+.++.+++..++..|+++|++++.+++.....+...|+++.|+.+|.++ +..++..|+++|.+|+.
T Consensus 134 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-- 209 (252)
T 4db8_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-- 209 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTT--
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhc--
Confidence 99999999999999998889999999999999999988888899999999999999986 67899999999999994
Q ss_pred hhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 280 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 280 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
.++..+..+.+.|+++.|+.++.+.+.++++.|+.+|.+|+.
T Consensus 210 ---~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 210 ---GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp ---SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred ---CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 456667788999999999999999999999999999998864
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-15 Score=151.58 Aligned_cols=207 Identities=18% Similarity=0.197 Sum_probs=162.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcc-----ccc---cc------ccCC-CCChHHHHHHHHHHHHHhhCChHHHH
Q 016423 134 QIAIDDLNNSTLSLEDSQRALQELLILVEP-----IDN---AN------GQLN-HPDTDIRKISAWILGKASQNNPLVQK 198 (390)
Q Consensus 134 k~~l~~l~~~~~s~e~~~~aLd~Le~lve~-----IDn---An------~lL~-s~~~~vR~~Aa~vLgta~QNNp~~Q~ 198 (390)
.+.++.+++ .+.+.+..|...+..+... ||. ++ .+|. ++++.+|..|||+|++++..++..+.
T Consensus 60 ~~~v~~l~s--~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 60 EDIVKGINS--NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp HHHHHHHTS--SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 334444433 2455555666666555422 111 22 5675 56689999999999999999999999
Q ss_pred HHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCC---hhHHHHHHHHHHHHHH
Q 016423 199 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGDL 275 (390)
Q Consensus 199 ~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~---~d~klr~KA~~LLs~L 275 (390)
.+++.|++|.|+.+|.+++..++..|+|||++|+.+++.....+...||++.|+.+|.++. ....+++.+++.++++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998653 1345788999999999
Q ss_pred hhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHH
Q 016423 276 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 276 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
+. ............|+++.|+.+|.+++.+++..|+.+|..|+....+..+.+...+.+..++..|+
T Consensus 218 ~~-----~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 284 (510)
T 3ul1_B 218 CR-----NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284 (510)
T ss_dssp HC-----CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred hh-----cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence 95 23334444555789999999999999999999999999999876655555654555566666554
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-16 Score=157.06 Aligned_cols=171 Identities=14% Similarity=0.183 Sum_probs=149.8
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+|+++++++|..|+++|++++.+|+..+..+.+.|++|.|+.+|++++..++..|++||.+|..+++++...+.+.||++
T Consensus 10 ~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~ 89 (457)
T 1xm9_A 10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIR 89 (457)
T ss_dssp HHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 56788999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHhc-CCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc--------CC--------ChhHH
Q 016423 250 MLQDILG-NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------SA--------DLDLQ 312 (390)
Q Consensus 250 ~L~~lL~-s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~--------~~--------d~~v~ 312 (390)
.|+.+|. ++ +..++..|+|+|++|+. +++.+..+.+ |.++.|+.+|. ++ +.+++
T Consensus 90 ~Lv~lL~~~~--~~~~~~~a~~aL~nLa~------~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 90 EAVSLLRRTG--NAEIQKQLTGLLWNLSS------TDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHHHT------SSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHHHHhhCC--CHHHHHHHHHHHHHHhc------CHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 9999998 54 67799999999999994 4677888888 99999999993 22 45666
Q ss_pred HHHHHHHHHHHhcChhHHHHHHhh-CCcHHHHHHHHHHH
Q 016423 313 EKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQL 350 (390)
Q Consensus 313 EkAL~aL~~L~~~~~~~r~~~~~~-~gL~~~L~~Lr~~l 350 (390)
..|+.+|.+|... +..++.+... +++.+++..|++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCV 198 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 6999999999987 6788888754 55688888887653
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=150.29 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=149.2
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCccchHHHH-Hc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VE 245 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL-~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~-~~ 245 (390)
.+|.+++++++..|+|+|++++.+ |+..++.+.+.|++|+|+++| ++.+..++..|+.||.+|..+++..+..+. ..
T Consensus 134 ~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~ 213 (354)
T 3nmw_A 134 AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 213 (354)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHST
T ss_pred HHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhc
Confidence 678899999999999999999986 889999999999999999975 556678899999999999887777777887 68
Q ss_pred CcHHHHHHHhcCCChh--HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 246 AGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d--~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
||++.|+.+|.+++.. ..++.+|+++|++|+... ..+++.+..+.+.|.++.|+.+|.+.+..+++.|+.+|.+|+
T Consensus 214 Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp THHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 9999999999875322 258999999999998410 035667888999999999999999999999999999999999
Q ss_pred hcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 324 QLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 324 ~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
...++.++.+...+++.++++.|++
T Consensus 292 ~~~~~~~~~i~~~G~i~~Lv~LL~s 316 (354)
T 3nmw_A 292 ARNPKDQEALWDMGAVSMLKNLIHS 316 (354)
T ss_dssp SSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 6556777778756666777666643
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=156.93 Aligned_cols=173 Identities=18% Similarity=0.202 Sum_probs=148.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-----~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
.+|.++++.+|..|+|+||+++.++|.+++.+++.|++++|+.+|...+ ..+...++|++++++++..+......
T Consensus 169 ~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 248 (529)
T 3tpo_A 169 SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 248 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 6889999999999999999999999999999999999999999998654 34678899999999999877766666
Q ss_pred HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 244 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 244 ~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
..++++.|..+|.++ +..++..|+|+|++|+. ..++....+.+.|+++.|+.+|.+++..++..++.+|++|+
T Consensus 249 ~~~~lp~L~~LL~~~--~~~v~~~a~~aL~~l~~-----~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 321 (529)
T 3tpo_A 249 VEQILPTLVRLLHHN--DPEVLADSCWAISYLTD-----GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 321 (529)
T ss_dssp HHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHS-----SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHhcCC--cHHHHHHHHHHHHHhhh-----hhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 778999999999986 67789999999999994 44556677889999999999999999999999999999999
Q ss_pred hcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 324 QLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 324 ~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
+..+.....+...+++..++..|++
T Consensus 322 ~~~~~~~~~i~~~g~l~~L~~LL~~ 346 (529)
T 3tpo_A 322 TGTDEQTQKVIDAGALAVFPSLLTN 346 (529)
T ss_dssp TSCHHHHHHHHHTTGGGGHHHHTTC
T ss_pred ccchHHHHHHhhcccHHHHHHHHcC
Confidence 8776666666655666666665543
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-14 Score=149.11 Aligned_cols=174 Identities=16% Similarity=0.166 Sum_probs=147.9
Q ss_pred ccC-CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL-~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+| .++++.++..|+|+|++++.+++.....+++.|++|.|+.+|.+++..++..|+|||++|+.+++.....+...||
T Consensus 126 ~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~ 205 (529)
T 3tpo_A 126 SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGA 205 (529)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCC
Confidence 456 4667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC---hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 248 DLMLQDILGNSS---FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 248 l~~L~~lL~s~~---~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
++.|+.+|..+. ....+++.+++.+++++. ............|+++.|+.+|.+++.+++..|+.+|..|+.
T Consensus 206 i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~-----~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 206 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR-----NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 280 (529)
T ss_dssp HHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC-----CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh-----cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 999999998643 235678899999999995 333444455567899999999999999999999999999998
Q ss_pred cChhHHHHHHhhCCcHHHHHHHH
Q 016423 325 LRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 325 ~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
...+..+.+...+.+..++..|+
T Consensus 281 ~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 281 GPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHT
T ss_pred hhhhhHHHHHhccchHHHHHHhc
Confidence 77666666664555566666654
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-14 Score=147.41 Aligned_cols=207 Identities=15% Similarity=0.174 Sum_probs=162.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccc--------cc------ccCCCCC-hHHHHHHHHHHHHHhhCChHHH
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--------AN------GQLNHPD-TDIRKISAWILGKASQNNPLVQ 197 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDn--------An------~lL~s~~-~~vR~~Aa~vLgta~QNNp~~Q 197 (390)
+...++.+.++ +.+.+..|+..|..++..-++ ++ .+|.+++ +.+|..|+|+|++++..++..+
T Consensus 76 l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 34444445432 355566666666555432221 11 5677766 9999999999999999999999
Q ss_pred HHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 198 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 198 ~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
..+++.|++|.|+.+|.+++..++..|+++|++++.+.+.....+...|+++.|+.+|..+ .+..++..++++|++|+.
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHc
Confidence 9999999999999999998899999999999999999998889999999999999999543 367899999999999994
Q ss_pred hhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 278 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 278 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
..+ ........|+++.|+.+|.+++..++..|+.+|.+|+...+...+.+...+.+..++..|+.
T Consensus 233 -----~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~ 297 (528)
T 4b8j_A 233 -----GKP-QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 297 (528)
T ss_dssp -----SSS-CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC
T ss_pred -----CCC-CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC
Confidence 222 33344568999999999999999999999999999998765544555545666666666643
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.64 E-value=6e-15 Score=152.18 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=144.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-----~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
.+|.++++++|..|+|+|++++.++|.+++.+++.|++++|+.++.+.+ ..+...++|++++++++..+......
T Consensus 150 ~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 229 (510)
T 3ul1_B 150 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 229 (510)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHH
Confidence 5789999999999999999999999999999999999999999998654 34677899999999999877766666
Q ss_pred HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 244 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 244 ~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
..++++.|..+|.++ +..++..|+++|++|+. ..++....+.+.|+++.|+.+|.+++..++..++++|++|+
T Consensus 230 ~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~L~~-----~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~ 302 (510)
T 3ul1_B 230 VEQILPTLVRLLHHN--DPEVLADSCWAISYLTD-----GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 302 (510)
T ss_dssp HHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTS-----SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHhh-----chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhh
Confidence 678899999999986 67799999999999984 34455677889999999999999999999999999999999
Q ss_pred hcChhHHHHHHhhCCcHHHHHHH
Q 016423 324 QLRTTEALVLKDFCGLDTALERL 346 (390)
Q Consensus 324 ~~~~~~r~~~~~~~gL~~~L~~L 346 (390)
...+.....+...+++..++..|
T Consensus 303 ~~~~~~~~~i~~~g~l~~L~~LL 325 (510)
T 3ul1_B 303 TGTDEQTQKVIDAGALAVFPSLL 325 (510)
T ss_dssp TSCHHHHHHHHHTTGGGGCC-CT
T ss_pred cCCHHHHHHHhhccchHHHHHHh
Confidence 87665555555455554444433
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=146.18 Aligned_cols=166 Identities=14% Similarity=0.023 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHH
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 254 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~-LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~l 254 (390)
.+-|..|+..|..++.+ ......|.+.|++|+|+. +|.+++..++..|+|+|++++.+++..+..+++.||++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46788999999999886 557778999999999999 9999889999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 255 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 255 L~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
|.++ ++..++++|+|+|++|+. +++...+.|.+.|.++.|+.+|++++..++.+|+.+|.+|+...++.++.+.
T Consensus 133 L~~~-~~~~v~~~A~~ALsnl~~-----~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 133 LDRD-ACDTVRVKALFAISCLVR-----EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HccC-CCHHHHHHHHHHHHHHHc-----CCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9854 256799999999999994 4555666788899999999999999999999999999999987666777777
Q ss_pred hhCCcHHHHHHHHH
Q 016423 335 DFCGLDTALERLRQ 348 (390)
Q Consensus 335 ~~~gL~~~L~~Lr~ 348 (390)
..+.+.+++..|+.
T Consensus 207 ~~g~i~~Lv~LL~~ 220 (296)
T 1xqr_A 207 SMGMVQQLVALVRT 220 (296)
T ss_dssp HTTHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHcC
Confidence 56666777776664
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-14 Score=145.43 Aligned_cols=195 Identities=14% Similarity=0.129 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHHHHhhcccccc--------c------ccCCCC-ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHH
Q 016423 146 SLEDSQRALQELLILVEPIDNA--------N------GQLNHP-DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 210 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnA--------n------~lL~s~-~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll 210 (390)
+.+.+..|+..|..++..-++. + .+|.++ ++.+|..|+|+|++++..++..+..+++.|++|.|+
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 179 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 179 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 3555666666666665432111 1 678776 899999999999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchh
Q 016423 211 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 290 (390)
Q Consensus 211 ~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~ 290 (390)
.+|.+++..++..|+++|++++.+.+.....+...|+++.|+.+|.++ +..++..|+++|++|+. ........
T Consensus 180 ~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~-----~~~~~~~~ 252 (530)
T 1wa5_B 180 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCR-----GKKPQPDW 252 (530)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHC-----CSSSCCCH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhC-----CCCCCCcH
Confidence 999988889999999999999999888888889999999999999975 67799999999999994 22233445
Q ss_pred hhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHH
Q 016423 291 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 291 l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
....++++.|+.+|.+++..++..|+.+|.+|+...+...+.+...+.+..++..|+
T Consensus 253 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 667899999999999999999999999999999865554555553455566666554
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-14 Score=146.08 Aligned_cols=208 Identities=16% Similarity=0.159 Sum_probs=163.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc-cccc------c------ccCCCCChHHHHHHHHHHHHHhhCChHHHHH
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNA------N------GQLNHPDTDIRKISAWILGKASQNNPLVQKQ 199 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~-IDnA------n------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~ 199 (390)
+...++.+.++ .+.+-+..|+..|..+... -++. + .+|.++++.+|..|+|+|++++.+++.++..
T Consensus 119 v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 119 VPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp HHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 33444555443 1255566666666666653 1211 1 6788899999999999999999999999999
Q ss_pred HHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhh
Q 016423 200 VLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 278 (390)
Q Consensus 200 ~le~g~l~~Ll~LL-~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~ 278 (390)
+.+.|++|+|+.++ .+.+..++..|+|+|++++++.+... .....|+++.|+.+|.++ +..++..|+++|++|+.
T Consensus 198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~- 273 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSN--DEEVLTDACWALSYLSD- 273 (528)
T ss_dssp HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTS-
T ss_pred HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHc-
Confidence 99999999999999 55667899999999999999975543 344589999999999876 67799999999999984
Q ss_pred hhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHH
Q 016423 279 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ 349 (390)
Q Consensus 279 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~ 349 (390)
..+.....+.+.|+++.|+.+|.+++..+++.|+.+|++|+...+...+.+...+.+..++..|++.
T Consensus 274 ----~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 274 ----GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp ----SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred ----CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 3444456788999999999999999999999999999999987665565565444456666666543
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=153.35 Aligned_cols=174 Identities=14% Similarity=0.128 Sum_probs=150.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~-~~~a~~~f~~~gG 247 (390)
.+|.+++++++..|+|+|.+++..++..+..+.+.|+||+|+.+|.+.+..++..|++||.+|..+ ++.+...+.++||
T Consensus 55 ~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~Ga 134 (584)
T 3l6x_A 55 AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDG 134 (584)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCC
Confidence 367889999999999999999999999999999999999999999999999999999999999986 6889999999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc------------------CCCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA------------------SADL 309 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~------------------~~d~ 309 (390)
++.|+.+|.+.. +..++..|+++|.+|+. +++.+..+.+ +.++.|+.++. ..+.
T Consensus 135 Ip~LV~LL~s~~-~~~~~e~aa~aL~nLS~------~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 135 VPALVRLLRKAR-DMDLTEVITGTLWNLSS------HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHHHHHHHCC-SHHHHHHHHHHHHHHTT------SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHHhC------CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 999999999632 56789999999999984 5666777775 56899999871 2367
Q ss_pred hHHHHHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHH
Q 016423 310 DLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQL 350 (390)
Q Consensus 310 ~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l 350 (390)
++++.|..||.+|+...++.|+.++...|+ ++++..|++..
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~ 248 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI 248 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 999999999999999887778888866676 57777777653
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-14 Score=141.36 Aligned_cols=174 Identities=19% Similarity=0.182 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHhhcccc-c------cc------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhh
Q 016423 147 LEDSQRALQELLILVEPID-N------AN------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 213 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~ID-n------An------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL 213 (390)
.+-+..+...|..++...+ + ++ .+|.++++.+|..|+++|++++.+++...+.+++.|++|.|+.++
T Consensus 206 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 285 (450)
T 2jdq_A 206 TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL 285 (450)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH
Confidence 3445556666666665321 1 11 678889999999999999999999999888899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhh
Q 016423 214 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 293 (390)
Q Consensus 214 ~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~ 293 (390)
.+++..++..|+++|++++++++.....+.+.|+++.|+.+|.++ +.++|..|+++|.+|+.. ..++....+.+
T Consensus 286 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~----~~~~~~~~l~~ 359 (450)
T 2jdq_A 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSG----GSAEQIKYLVE 359 (450)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH----CCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC----CCHHHHHHHHH
Confidence 998889999999999999999888888888899999999999976 677999999999999952 24455666778
Q ss_pred cCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 294 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 294 ~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.|+++.|+.+|...+..+++.|+.+|.+|+..+
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999754
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.6e-15 Score=150.06 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=149.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCccchHHHH-Hc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VE 245 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL-~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~-~~ 245 (390)
.+|.+++++++..|+|+|++++.+ ++..++.+.+.|++|+|+.+| .+.+..++..|+.||.+|..+++..+..+. ..
T Consensus 250 ~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~ 329 (458)
T 3nmz_A 250 AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 329 (458)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHST
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 578899999999999999999986 889999999999999999975 555678888899999999887777777887 78
Q ss_pred CcHHHHHHHhcCCChh--HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 246 AGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d--~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
||++.|+.+|.+++.. ..++.+|+++|++|+... ..+++.+..+++.|.++.|+.+|.+.+..+++.|+.+|.+|+
T Consensus 330 Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp THHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 9999999999876322 258999999999998410 035667888999999999999999999999999999999999
Q ss_pred hcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 324 QLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 324 ~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
...++.++.+...+++.++++.|++
T Consensus 408 ~~~~~~~~~i~~~G~I~~Lv~LL~s 432 (458)
T 3nmz_A 408 ARNPKDQEALWDMGAVSMLKNLIHS 432 (458)
T ss_dssp SSCHHHHHHHHHHTHHHHHHTTTTC
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 6666777878766777777776643
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-14 Score=146.71 Aligned_cols=195 Identities=16% Similarity=0.124 Sum_probs=156.2
Q ss_pred CHHHHHHHHHHHHHhhcccc-c------cc------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHh
Q 016423 146 SLEDSQRALQELLILVEPID-N------AN------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 212 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~ID-n------An------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~L 212 (390)
+.+-+..|...|..+...-+ + ++ .+|.++++.+|..|+|+|++++.+++..+..++..|++|.|+.+
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l 223 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence 34555566666666554321 1 11 56778899999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh
Q 016423 213 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 292 (390)
Q Consensus 213 L~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~ 292 (390)
+.+.+..++..|+++|++++++..+....+...++++.|..+|.++ +..++..|+++|.+|+. ..++....+.
T Consensus 224 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~-----~~~~~~~~~~ 296 (530)
T 1wa5_B 224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSD-----GPQEAIQAVI 296 (530)
T ss_dssp GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHS-----SCHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhC-----CCHHHHHHHH
Confidence 9998889999999999999998745555667789999999999976 67799999999999994 3445566788
Q ss_pred hcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHH
Q 016423 293 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 293 ~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
+.|+++.|+.+|.+.+..+++.|+.+|.+|+...+...+.+...+.+..++..|+
T Consensus 297 ~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 351 (530)
T 1wa5_B 297 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351 (530)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred hcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc
Confidence 8999999999999999999999999999999765554454543444455555443
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.58 E-value=9.2e-14 Score=137.70 Aligned_cols=171 Identities=18% Similarity=0.200 Sum_probs=142.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCC-ccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN-LAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~-~~a~~~f~~~g 246 (390)
.+|+++++.+|..|+|+|++++.+++..++.+++.|++|.|+.++.+ .+..++..|+++|++++++. +.....+. .+
T Consensus 114 ~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~ 192 (450)
T 2jdq_A 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SP 192 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GG
T ss_pred HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HH
Confidence 67889999999999999999999999999999999999999999996 56889999999999999986 44433333 78
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+++.|..++.++ +..++..++++|.+|+. ..++....+.+.|+++.++.+|.+++..+++.|+.+|.+|+...
T Consensus 193 ~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 265 (450)
T 2jdq_A 193 CLNVLSWLLFVS--DTDVLADACWALSYLSD-----GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD 265 (450)
T ss_dssp GHHHHHHHTTCC--CHHHHHHHHHHHHHHTS-----SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHccC--CHHHHHHHHHHHHHHHC-----CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC
Confidence 999999999976 67799999999999984 33445567788999999999999999999999999999999876
Q ss_pred hhHHHHHHhhCCcHHHHHHHH
Q 016423 327 TTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 327 ~~~r~~~~~~~gL~~~L~~Lr 347 (390)
+...+.+...+.+..++..|+
T Consensus 266 ~~~~~~~~~~~~l~~L~~ll~ 286 (450)
T 2jdq_A 266 DIQTQVILNCSALQSLLHLLS 286 (450)
T ss_dssp HHHHHHHHTTTHHHHHHHHTT
T ss_pred hHHHHHHHHCccHHHHHHHHc
Confidence 554444443344455555443
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=145.59 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=143.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHh
Q 016423 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 202 (390)
Q Consensus 136 ~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le 202 (390)
.+..|.++ +.+.+..|...|..++..-++.. .+|+++++.++..|+|+|.+++..|+..+..+.+
T Consensus 7 lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 7 AVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444443 23455556666665553322211 6889999999999999999999999999999999
Q ss_pred cCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhc--------CCC------hhHHHHHH
Q 016423 203 LGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG--------NSS------FEIRLHRK 267 (390)
Q Consensus 203 ~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~--------s~~------~d~klr~K 267 (390)
.|++|+|+++|. +.+.+++..|+|||++|..+ +.....+.. ||++.|+.+|. ++. .+..+++.
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 999999999999 77789999999999999998 777788888 99999999993 221 24668889
Q ss_pred HHHHHHHHhhhhhhcCCCCCchhhhhc-CchHHHHHhhcC------CChhHHHHHHHHHHHHH
Q 016423 268 AVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS------ADLDLQEKALAAIKNLL 323 (390)
Q Consensus 268 A~~LLs~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~~------~d~~v~EkAL~aL~~L~ 323 (390)
|+|+|++|+. +++.+..+.+. |+++.|+.+|.+ .+..++++++.+|.+|.
T Consensus 163 a~~aL~nLs~------~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 163 ATGCLRNLSS------ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HHHHHHHHTT------SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcc------CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 9999999994 36677888887 999999999986 46789999999999886
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.4e-14 Score=139.83 Aligned_cols=168 Identities=11% Similarity=0.077 Sum_probs=140.4
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CccchHHHHHcCcHHHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLML 251 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~-~~~a~~~f~~~gGl~~L 251 (390)
.++.+|..|+|+|.+++.+++..+..+... |+||+|+.+|.+++..++..|.+||++|..+ ++.+...+.+.||++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 467899999999999999998888887655 5599999999998899999999999999986 66788899999999999
Q ss_pred HHHh-cCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh-hcCchHHHHHhhcCCCh----hHHHHHHHHHHHHHh-
Q 016423 252 QDIL-GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR-DRFFLKSVVDLTASADL----DLQEKALAAIKNLLQ- 324 (390)
Q Consensus 252 ~~lL-~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~-~~g~v~~Lv~lL~~~d~----~v~EkAL~aL~~L~~- 324 (390)
+.+| +++ +..++..|+.+|.+|+. ..++.+..+. ..|.++.|+.+|.+.+. ++++.|+.+|.+|..
T Consensus 176 v~lL~~~~--~~~~~~~A~~aL~nLs~-----~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~ 248 (354)
T 3nmw_A 176 MECALEVK--KESTLKSVLSALWNLSA-----HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248 (354)
T ss_dssp HHHHHHCC--CHHHHHHHHHHHHHHHT-----TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHc-----cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh
Confidence 9985 444 56789999999999984 2334455565 79999999999987643 599999999999986
Q ss_pred --cChhHHHHHHhhCCcHHHHHHHHH
Q 016423 325 --LRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 325 --~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
..++.++.+...+++.+++..|++
T Consensus 249 ~a~~~~~~~~i~~~g~i~~Lv~lL~~ 274 (354)
T 3nmw_A 249 IATNEDHRQILRENNCLQTLLQHLKS 274 (354)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 456778888866677888888764
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-13 Score=146.14 Aligned_cols=210 Identities=10% Similarity=-0.011 Sum_probs=158.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccc-------cc------ccCCCCChHHHHHHHHHHHHHhhCCh----
Q 016423 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-------AN------GQLNHPDTDIRKISAWILGKASQNNP---- 194 (390)
Q Consensus 132 ~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDn-------An------~lL~s~~~~vR~~Aa~vLgta~QNNp---- 194 (390)
+.+.++..|.++..+.+.+..|.+-|.||..+-+. ++ .+|+++++.++..|+|+|++++...+
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~ 457 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM 457 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhh
Confidence 34445555555544556666777777777655221 11 57788999999999999999998642
Q ss_pred -------------------------HHH---HHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 195 -------------------------LVQ---KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 195 -------------------------~~Q---~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.++ +.+++.|++|.|+.++++.++.++..|.|||+++..+ +.....+.++|
T Consensus 458 ~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~G 536 (810)
T 3now_A 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEG 536 (810)
T ss_dssp CCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTT
T ss_pred hHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCC
Confidence 234 6789999999999999999999999999999999964 66888999999
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC-chhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHh
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~ 324 (390)
|+++|+.+|.++ +...|..|+|.|++|+.. .++.. ...-...|+++.|+.+|.++ +...+..|+.||.+|+.
T Consensus 537 aip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~----~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~ 610 (810)
T 3now_A 537 GVKALLRMALEG--TEKGKRHATQALARIGIT----INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS 610 (810)
T ss_dssp HHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHccC--CHHHHHHHHHHHHHHhcC----CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 999999999986 567899999999999962 23321 00011246999999999876 33445789999999999
Q ss_pred cChhHHHHHHhhCCcHHHHHHHHH
Q 016423 325 LRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 325 ~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
.++..++.+...+++.+++..|.+
T Consensus 611 ~~d~~~~~Ii~aG~l~~Lv~LL~s 634 (810)
T 3now_A 611 MNESVRQRIIKEQGVSKIEYYLME 634 (810)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcC
Confidence 876666667656777777776654
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=147.52 Aligned_cols=171 Identities=12% Similarity=0.022 Sum_probs=145.8
Q ss_pred ccCCCCCh-HHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHH-cC
Q 016423 169 GQLNHPDT-DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-EA 246 (390)
Q Consensus 169 ~lL~s~~~-~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~-~g 246 (390)
.+|.++.. ..+..|+|+|++++..++..++.+++.|++|+|+.++.+++..++..|+++|++|+.+ +..+..|.. .|
T Consensus 587 ~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g 665 (810)
T 3now_A 587 NLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNND 665 (810)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSS
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccC
Confidence 57776533 4567899999999999999999999999999999999998888999999999999986 557788885 67
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhh-cCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
++++|+.++.++ +..+|..|+|+|++|+. +++.....+++ .|+++.|+.+|.++|..++..|+.+|.+|+..
T Consensus 666 ~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~-----~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 666 RVKFLALLCEDE--DEETATACAGALAIITS-----VSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHGGGCS--SHHHHHHHHHHHHHHHH-----HCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 899999999986 67899999999999995 24556667777 89999999999999999999999999999987
Q ss_pred ChhHHHHHHhhCCcHHHHHHHH
Q 016423 326 RTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 326 ~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
++++...+...++++++...|+
T Consensus 739 s~e~~~~l~e~G~i~~L~~LL~ 760 (810)
T 3now_A 739 GEEIAKKLFETDIMELLSGLGQ 760 (810)
T ss_dssp CHHHHHHHHTSTHHHHHTTSCC
T ss_pred CHHHHHHHHHCCCHHHHHHHHh
Confidence 7777777775555666666553
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-12 Score=130.13 Aligned_cols=209 Identities=14% Similarity=0.152 Sum_probs=154.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHH
Q 016423 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQ 199 (390)
Q Consensus 132 ~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~ 199 (390)
.+...+..+.+. .+.+-+..+...|..+...-++.. .+|+++++.++..|+++|++++.+++..+..
T Consensus 60 ~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 138 (529)
T 1jdh_A 60 MVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138 (529)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444555432 245556666666666555433221 6788999999999999999999998889999
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh
Q 016423 200 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 279 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~ 279 (390)
+.+.|++|.|+.++.+++..++..+..+|++++.+++.....+...||++.|+.+|.++. +...+..++.+|.+|+.
T Consensus 139 i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-- 215 (529)
T 1jdh_A 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-- 215 (529)
T ss_dssp HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT--
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhc--
Confidence 999999999999999988889999999999999999999999999999999999987542 33344445555555542
Q ss_pred hhcCCCCCchhhhh---------------------------------------cCchHHHHHhhcCCChhHHHHHHHHHH
Q 016423 280 LENMHKVEPPLFRD---------------------------------------RFFLKSVVDLTASADLDLQEKALAAIK 320 (390)
Q Consensus 280 l~~~~~~~~~~l~~---------------------------------------~g~v~~Lv~lL~~~d~~v~EkAL~aL~ 320 (390)
+++.+..+.+ .|+++.++.+|.+++.++++.|+.+|.
T Consensus 216 ----~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 216 ----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp ----STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ----CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1222222222 356677777777778889999999999
Q ss_pred HHHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 321 NLLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 321 ~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
+|....++.+..+...+++..++..|+.
T Consensus 292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 292 NLTCNNYKNKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHHc
Confidence 9988766677777766777888877764
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.1e-13 Score=136.16 Aligned_cols=151 Identities=14% Similarity=0.041 Sum_probs=133.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHH-hcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhh---CCccchHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSFV----EEAVKALYTVSSLIR---NNLAGQEM 241 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~l-e~g~l~~Ll~LL~s~~~----~vr~kAL~ALSsLiR---~~~~a~~~ 241 (390)
++.+.++.++..|+.+|++++..++..|..+. ..|++|.|+.+|.+.++ +++..|.++|+++.. .++.....
T Consensus 295 Ll~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 295 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp HTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 35678899999999999999987777888887 78999999999987653 488899999999987 78888889
Q ss_pred HHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHH
Q 016423 242 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 321 (390)
Q Consensus 242 f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~ 321 (390)
+.+.||++.|+.+|.+. +..++..|+++|++|+. .+++.+..+.+.|+++.|+++|.+.+..+++.|+.+|.+
T Consensus 375 i~~~G~i~~Lv~LL~~~--~~~v~~~A~~aL~nLa~-----~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~n 447 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSA-----RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447 (458)
T ss_dssp HHHTTHHHHHHHHSSCS--CHHHHHHHHHHHHHHHS-----SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCC--ChHHHHHHHHHHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999986 56799999999999994 467778889999999999999999999999999999999
Q ss_pred HHhcCh
Q 016423 322 LLQLRT 327 (390)
Q Consensus 322 L~~~~~ 327 (390)
|+...+
T Consensus 448 L~~~~p 453 (458)
T 3nmz_A 448 LMANRP 453 (458)
T ss_dssp HHTCCS
T ss_pred HHcCCH
Confidence 998643
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.6e-12 Score=132.04 Aligned_cols=209 Identities=13% Similarity=0.140 Sum_probs=158.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHH
Q 016423 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQ 199 (390)
Q Consensus 132 ~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~ 199 (390)
.+...+..+.+. .+.+.+..|...|..+...-++.. .+|.++++.+|..|+++|++++.+++..+..
T Consensus 57 ~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 135 (644)
T 2z6h_A 57 MVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135 (644)
T ss_dssp HHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHH
Confidence 344555555543 245566666666666655433221 6788999999999999999999998889999
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh
Q 016423 200 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 279 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~ 279 (390)
+.+.|++|.|+.+|.+.+..++..++.+|++++.+++.....+...||++.|+.+|.+.. ..+++..++.+|.+|+.
T Consensus 136 v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~-- 212 (644)
T 2z6h_A 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-- 212 (644)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT--
T ss_pred HHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhc--
Confidence 999999999999999988888888899999999988999999999999999999999763 56678888999988873
Q ss_pred hhcCCCCCchhhhhcCchHH---------------------------------------HHHhhcCCChhHHHHHHHHHH
Q 016423 280 LENMHKVEPPLFRDRFFLKS---------------------------------------VVDLTASADLDLQEKALAAIK 320 (390)
Q Consensus 280 l~~~~~~~~~~l~~~g~v~~---------------------------------------Lv~lL~~~d~~v~EkAL~aL~ 320 (390)
++..+..+++.|+++. |+.+|.+.+.++++.|+.+|.
T Consensus 213 ----~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 213 ----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288 (644)
T ss_dssp ----CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ----CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444555555555544 455555667778888888888
Q ss_pred HHHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 321 NLLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 321 ~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
+|....+..++.+...+++..++..|..
T Consensus 289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 289 NLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 8877655566666656666777777654
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=123.08 Aligned_cols=149 Identities=13% Similarity=0.131 Sum_probs=120.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
++|.++++++|..|+|+|.+++..|+..+..+.+.|++|+|+++|. +.+.+++..|..||-+|.. ++.....+.. +|
T Consensus 59 ~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~ 136 (233)
T 3tt9_A 59 QLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EA 136 (233)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-cc
Confidence 5788999999999999999999999999999999999999999998 4567788877766666643 3455556554 68
Q ss_pred HHHHHHHhc-----C---------CChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhc-CchHHHHHhhcC------
Q 016423 248 DLMLQDILG-----N---------SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS------ 306 (390)
Q Consensus 248 l~~L~~lL~-----s---------~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~~------ 306 (390)
++.|+.++. . ...+..++.+|+.+|.+|+. .+++.+..+.+. |.++.|+.+++.
T Consensus 137 i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss-----~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~ 211 (233)
T 3tt9_A 137 LLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS-----AGADGRKAMRRCDGLIDSLVHYVRGTIADYQ 211 (233)
T ss_dssp HHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT-----SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc-----CCHHHHHHHHHCCCcHHHHHHHHHhhhhccc
Confidence 999988663 0 01266899999999999985 456778888765 899999999965
Q ss_pred CChhHHHHHHHHHHHHHh
Q 016423 307 ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 307 ~d~~v~EkAL~aL~~L~~ 324 (390)
.+...+|.++.+|.+|.-
T Consensus 212 ~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 212 PDDKATENCVCILHNLSY 229 (233)
T ss_dssp TTCHHHHHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHHHHHh
Confidence 266899999999999864
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-13 Score=136.12 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=145.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.+|+++++.+|..|+.+|++++.+++ .+..++.. |+++.|+++|.+. +..++..|+.+|.++.++ +.+...+.+.|
T Consensus 24 ~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g 101 (529)
T 1jdh_A 24 KLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSG 101 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcC
Confidence 46778999999999999999988765 55566654 8999999999754 678999999999999887 44788888999
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
|++.|+.+|+++ +..++..|++.|.+|+. .++..+..+.+.|.++.|+.+|.+++..++..++.+|.+|+...
T Consensus 102 ~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 102 GIPALVKMLGSP--VDSVLFYAITTLHNLLL-----HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHHHHTTCS--CHHHHHHHHHHHHHHHH-----HCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHhc-----CCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 999999999987 57799999999999995 24556777889999999999999999999999999999999866
Q ss_pred hhHHHHHHhhCCcHHHHHHHHH
Q 016423 327 TTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 327 ~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
++.+..+...+++..++..|++
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~ 196 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRT 196 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHh
Confidence 6777777766677777777764
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-11 Score=131.04 Aligned_cols=208 Identities=14% Similarity=0.138 Sum_probs=156.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHH
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQV 200 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~ 200 (390)
+...++.|.+. .+.+-+..|+..|..+...-++.. .+|.++++.+|..|+|+|++++.+++..+..+
T Consensus 194 i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 33344444433 256677777777777655544322 68899999999999999999999999999999
Q ss_pred HhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhh
Q 016423 201 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 280 (390)
Q Consensus 201 le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l 280 (390)
.+.|++|.|+.++.+++..++..|+.+|.+++.+++.+...+...||++.|+.+|.+.. ....+..++.+|.+|+.
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~--- 348 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV--- 348 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHT---
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhc---
Confidence 99999999999999988889999999999999999999999999999999999998653 33444455566655552
Q ss_pred hcCCCCCchhhh---------------------------------------hcCchHHHHHhhcCCChhHHHHHHHHHHH
Q 016423 281 ENMHKVEPPLFR---------------------------------------DRFFLKSVVDLTASADLDLQEKALAAIKN 321 (390)
Q Consensus 281 ~~~~~~~~~~l~---------------------------------------~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~ 321 (390)
.+..+..+. ..++++.|+.+|.+.+..+++.|+.+|.+
T Consensus 349 ---~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 ---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp ---STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ---ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 111122222 23567777777888888999999999999
Q ss_pred HHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 322 LLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 322 L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
|....+..+..+...+++..++..|..
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 988766666666656677888887765
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.2e-12 Score=135.50 Aligned_cols=196 Identities=18% Similarity=0.188 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHHhhcccccc----c------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC
Q 016423 146 SLEDSQRALQELLILVEPIDNA----N------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 215 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnA----n------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s 215 (390)
+.+-+..++..|..++...... . .+|.++++.+|..|+|+|++++.+++..+..+.+.|+++.|+.+|.+
T Consensus 373 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 3445555566666655433211 1 57889999999999999999999999999999999999999999976
Q ss_pred C--CHHHHHHHHHHHHHHhhCCccc---hHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchh
Q 016423 216 S--FVEEAVKALYTVSSLIRNNLAG---QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 290 (390)
Q Consensus 216 ~--~~~vr~kAL~ALSsLiR~~~~a---~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~ 290 (390)
. ...++..|+++|++|+.+++.. +..+...||++.|+.+|.+++ ...++..|+++|++|+. ++..+..
T Consensus 453 ~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~-~~~v~~~A~~aL~nLa~------~~~~~~~ 525 (780)
T 2z6g_A 453 AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLAL------CPANHAP 525 (780)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHHS------SHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCC-hHHHHHHHHHHHHHHhc------CHHHHHH
Confidence 3 3489999999999999877663 567889999999999999763 45799999999999984 3444577
Q ss_pred hhhcCchHHHHHhhcCCC----------------------hhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 291 FRDRFFLKSVVDLTASAD----------------------LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 291 l~~~g~v~~Lv~lL~~~d----------------------~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
+.+.|+++.|+.+|.+.+ .++++.++.+|.+|+.. +.++..+...+++.+++..|++
T Consensus 526 i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~ 604 (780)
T 2z6g_A 526 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD-IHNRIVIRGLNTIPLFVQLLYS 604 (780)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTCCHHHHHHGGGC
T ss_pred HHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC-hhhHHHHHHCCcHHHHHHHHcC
Confidence 889999999999996532 45788999999999875 4677777767777777777654
Q ss_pred H
Q 016423 349 Q 349 (390)
Q Consensus 349 ~ 349 (390)
.
T Consensus 605 ~ 605 (780)
T 2z6g_A 605 P 605 (780)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.2e-12 Score=131.77 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=144.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.+|+++++.+|..|+.+|+.++.+++ .+..++.. |+++.|+++|.+. +..++..|+.+|.++.++. .+...+.+.|
T Consensus 21 ~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~g 98 (644)
T 2z6h_A 21 KLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 98 (644)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HHHHHHHTTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcC
Confidence 56788999999999999999999876 55555554 8899999999865 6789999999999998874 4788888999
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
|++.|+.+|+++ +..++..|+++|.+|+. .++..+..+.+.|+++.|+.+|.+++..++..++.+|.+|+...
T Consensus 99 ~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~-----~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 99 GIPALVKMLGSP--VDSVLFYAITTLHNLLL-----HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHHHHHTTCS--SHHHHHHHHHHHHHHHH-----HSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHh-----CcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 999999999987 67799999999999996 24556677889999999999999999999999999999999765
Q ss_pred hhHHHHHHhhCCcHHHHHHHH
Q 016423 327 TTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 327 ~~~r~~~~~~~gL~~~L~~Lr 347 (390)
+..+..+...+++..++..|+
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~ 192 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMR 192 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHT
T ss_pred cHHHHHHHHcCChHHHHHHHH
Confidence 667777775666777777665
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-11 Score=127.43 Aligned_cols=150 Identities=11% Similarity=0.092 Sum_probs=124.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.+|.++++.+|..|+|+|++++.+ |+..+..+.+.|+||+|+.+|.+ .+.+++..|.+||-+|.. ++.....+. .+
T Consensus 97 ~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~-~~ 174 (584)
T 3l6x_A 97 GLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIV-DH 174 (584)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHH-HH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHH-hc
Confidence 578899999999999999999986 89999999999999999999997 466788888888888876 566677776 47
Q ss_pred cHHHHHHHhc----------------CCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhh-cCchHHHHHhhcC---
Q 016423 247 GDLMLQDILG----------------NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RFFLKSVVDLTAS--- 306 (390)
Q Consensus 247 Gl~~L~~lL~----------------s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~--- 306 (390)
|++.|+.++. .+..+..++.+|+++|.+|+. .+++.+..+++ .|+++.|+.+|.+
T Consensus 175 alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~-----~~~~~R~~i~~~~Gli~~LV~~L~~~~~ 249 (584)
T 3l6x_A 175 ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSS-----ERSEARRKLRECDGLVDALIFIVQAEIG 249 (584)
T ss_dssp THHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTS-----SCHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhc-----CCHHHHHHHHHcCCcHHHHHHHHHHhhc
Confidence 8999999872 011257899999999999994 34455777766 5888999999974
Q ss_pred ---CChhHHHHHHHHHHHHHhc
Q 016423 307 ---ADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 307 ---~d~~v~EkAL~aL~~L~~~ 325 (390)
.+...+|.|+.+|.+|...
T Consensus 250 ~~~~~~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 250 QKDSDSKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp TTCCSCHHHHHHHHHHHHHHTT
T ss_pred ccCccHHHHHHHHHHHHHhhcc
Confidence 4678999999999998864
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.6e-10 Score=118.66 Aligned_cols=174 Identities=17% Similarity=0.117 Sum_probs=142.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChH-HHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~-~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.+|.+++-.+|..|..+|..++.|+|. +|+.++.. ++++.|+.+|+++.+.+|-.|+..|+.|+++|+..|+.+.-.|
T Consensus 129 ~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEn 208 (651)
T 3grl_A 129 SLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFEN 208 (651)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 788999999999999999999999999 99999976 9999999999998888999999999999999999999998899
Q ss_pred cHHHHHHHhcCCC--hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChh------HHHH---H
Q 016423 247 GDLMLQDILGNSS--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD------LQEK---A 315 (390)
Q Consensus 247 Gl~~L~~lL~s~~--~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~------v~Ek---A 315 (390)
|++.|..++.... ..-.+...++.+|.+|+. .++..+..|.+.|+++.|..+|..++.. .... +
T Consensus 209 aFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr-----~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~ 283 (651)
T 3grl_A 209 AFERLLDIITEEGNSDGGIVVEDCLILLQNLLK-----NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLM 283 (651)
T ss_dssp HHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh-----cCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHH
Confidence 9999999998542 123578899999999995 5677788999999999999999765321 2233 6
Q ss_pred HHHHHHHHhcC------hhHHHHHHhhCCcHHHHHHHH
Q 016423 316 LAAIKNLLQLR------TTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 316 L~aL~~L~~~~------~~~r~~~~~~~gL~~~L~~Lr 347 (390)
+.++..|+.-+ ..++..+.+.+++..++..+.
T Consensus 284 L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~ 321 (651)
T 3grl_A 284 LQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILM 321 (651)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 77777776542 235666664444566666544
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-09 Score=115.77 Aligned_cols=152 Identities=11% Similarity=0.153 Sum_probs=121.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHH---HHHHHHHHHHHHhhCCccchHHHH--
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE---EAVKALYTVSSLIRNNLAGQEMFY-- 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~---vr~kAL~ALSsLiR~~~~a~~~f~-- 243 (390)
.+++++++.+|..|+|+|++++.+ +.++..+++.|++++|+.+|.+.+.. ++..|+.||+.++-...|.. .|.
T Consensus 464 ~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~~ 541 (778)
T 3opb_A 464 REMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKKY 541 (778)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSSS
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCCC
Confidence 678899999999999999999755 99999999999999999999887543 79999999999986544332 332
Q ss_pred -HcCcHHHHHHHhcC-CCh-----------hHHHHHHHHHHHHHHhhhhhhcCC---CCCchhhhhc-CchHHHHHhhcC
Q 016423 244 -VEAGDLMLQDILGN-SSF-----------EIRLHRKAVSLVGDLAKCQLENMH---KVEPPLFRDR-FFLKSVVDLTAS 306 (390)
Q Consensus 244 -~~gGl~~L~~lL~s-~~~-----------d~klr~KA~~LLs~L~~~~l~~~~---~~~~~~l~~~-g~v~~Lv~lL~~ 306 (390)
..|++++|+.+|.. +.. +..-+..|+.+|++|++. .+ ++.+..++.+ |+++.+.++|.+
T Consensus 542 ~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~----~~n~~E~~r~~Ii~~~ga~~~L~~LL~s 617 (778)
T 3opb_A 542 SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS----ETSDGEEVCKHIVSTKVYWSTIENLMLD 617 (778)
T ss_dssp CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC----CSHHHHHHHHHHHHSHHHHHHHHHGGGC
T ss_pred ccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC----CcccchHHHHHHHHhcCHHHHHHHHHhC
Confidence 14899999999983 211 112366899999999961 11 2446767775 999999999999
Q ss_pred CChhHHHHHHHHHHHHHhcC
Q 016423 307 ADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 307 ~d~~v~EkAL~aL~~L~~~~ 326 (390)
++..++..|+.+|.+|++..
T Consensus 618 ~n~~VrrAA~elI~NL~~~~ 637 (778)
T 3opb_A 618 ENVPLQRSTLELISNMMSHP 637 (778)
T ss_dssp SSHHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999853
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-07 Score=100.20 Aligned_cols=141 Identities=14% Similarity=0.157 Sum_probs=118.1
Q ss_pred HHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc-chHHHHHc-CcHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 016423 199 QVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDL 275 (390)
Q Consensus 199 ~~le-~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~-a~~~f~~~-gGl~~L~~lL~s~~~d~klr~KA~~LLs~L 275 (390)
.|++ .+.++.|+.+|++++-.+|..++..|+.|+.+++. .++.+... +|++.|+.+|.++ ...+|-.++.+|.+|
T Consensus 116 ~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~--rE~iRneallLL~~L 193 (651)
T 3grl_A 116 IFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS--REVIRNDGVLLLQAL 193 (651)
T ss_dssp HHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS--SHHHHHHHHHHHHHH
T ss_pred HHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc--hHHHHHHHHHHHHHH
Confidence 4443 37899999999998888999999999999999998 78888855 9999999999987 355899999999999
Q ss_pred hhhhhhcCCCCCchhhhhcCchHHHHHhhcCCCh----hHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHH
Q 016423 276 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL----DLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 346 (390)
Q Consensus 276 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~----~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~L 346 (390)
+. .+++.++.+.-.|..+.|++++..... .+.+-++.+|.+|+..++..+..|+..+.+.++...|
T Consensus 194 t~-----~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL 263 (651)
T 3grl_A 194 TR-----SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF 263 (651)
T ss_dssp HT-----TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG
T ss_pred hc-----CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh
Confidence 94 677778888888999999999987543 7899999999999999877788888555555544433
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.7e-08 Score=106.44 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=125.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhC-CccchHHHHHcCc
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAG 247 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~-LL~s~~~~vr~kAL~ALSsLiR~-~~~a~~~f~~~gG 247 (390)
.|+|+++..|..||++|+++++ +|..+..+...|++.+++. +|.+++.+||..|.+||.+|+.+ .+.....++..|+
T Consensus 42 ~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~i 120 (684)
T 4gmo_A 42 DLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDV 120 (684)
T ss_dssp HHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTH
T ss_pred HcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcCh
Confidence 3588999999999999999997 6889999999999987654 67777889999999999999886 4566777888999
Q ss_pred HHHHHHHhcCCCh------------h-------HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-
Q 016423 248 DLMLQDILGNSSF------------E-------IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA- 307 (390)
Q Consensus 248 l~~L~~lL~s~~~------------d-------~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~- 307 (390)
++.|..+|.+... . ..+.-.++.+|.+|+. ...+....+...+.++.++.+|.+.
T Consensus 121 l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e-----~s~~~~~~v~~~~~l~~l~~~L~~~~ 195 (684)
T 4gmo_A 121 LTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLAL-----ARDEIHEAVATKQTILRLLFRLISAD 195 (684)
T ss_dssp HHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHhcccHHHHHHHHHhcC
Confidence 9999998853100 0 1123356778888884 3455566777889999999988543
Q ss_pred --ChhHHHHHHHHHHHHHhcChhHHHHHHh
Q 016423 308 --DLDLQEKALAAIKNLLQLRTTEALVLKD 335 (390)
Q Consensus 308 --d~~v~EkAL~aL~~L~~~~~~~r~~~~~ 335 (390)
..+++..|+.||..|..++....+.+..
T Consensus 196 ~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~ 225 (684)
T 4gmo_A 196 IAPQDIYEEAISCLTTLSEDNLKVGQAITD 225 (684)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 4689999999999999987766666663
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.2e-08 Score=104.68 Aligned_cols=139 Identities=13% Similarity=0.172 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhhCC----hHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccch-HHHHH------cC
Q 016423 179 RKISAWILGKASQNN----PLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-EMFYV------EA 246 (390)
Q Consensus 179 R~~Aa~vLgta~QNN----p~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~-~~f~~------~g 246 (390)
+..|+.+|+++++.+ ...+..++.. |++|.|..++.+++..++..|+++|++|+. ++.+. ..|.. .+
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhc
Confidence 778999999999986 4578888885 999999999999989999999999999996 46553 34532 23
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhc-CchHHHHHhhcC--CChhHHHHHHHHHHHHH
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS--ADLDLQEKALAAIKNLL 323 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~~--~d~~v~EkAL~aL~~L~ 323 (390)
++.+|+.++.++ +.++|+.|+++|.++++ .++.....+.+. +.++.++.++.. ++.+++..++-+|.+|+
T Consensus 655 rL~lLV~Ll~s~--D~~~r~AAagALAnLts-----~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 655 NFNILVKLLQLS--DVESQRAVAAIFANIAT-----TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHGGGCS--CHHHHHHHHHHHHHHHH-----HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCC--CHHHHHHHHHHHHHhcC-----CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 588999999876 78899999999999974 355566666666 899999999988 89999999999999999
Q ss_pred hc
Q 016423 324 QL 325 (390)
Q Consensus 324 ~~ 325 (390)
..
T Consensus 728 ~~ 729 (778)
T 3opb_A 728 EV 729 (778)
T ss_dssp TT
T ss_pred Hh
Confidence 74
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.7e-06 Score=73.91 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=95.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.++++.+|..|+++||.+.. ..+++.|+.+|.+++..+|..|+++|+.+-. ...+
T Consensus 52 ~~l~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~ 109 (201)
T 3ltj_A 52 KALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAV 109 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGH
T ss_pred HHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHH
Confidence 46788899999999999998842 2478999999999888999999999998621 2467
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
+.|..+|.++ +..+|..|++.|..+- ....++.|..++.+++..++..|+.+|..+-
T Consensus 110 ~~L~~~l~d~--~~~vr~~a~~aL~~~~----------------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 110 EPLIKALKDE--DWFVRIAAAFALGEIG----------------DERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHT----------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHhC----------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 8889999876 6778999999998874 1367889999999999999999999998873
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.1e-06 Score=75.67 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc----ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCc
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGA 205 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn----~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~ 205 (390)
.+.+...++.+.+ .+...+..|+..|..+-+ +.+- .+|.++++.+|..|+++||.+.. .++
T Consensus 18 ~~~~~~L~~~L~~--~~~~vR~~A~~~L~~~~~--~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~ 82 (211)
T 3ltm_A 18 PEKVEMYIKNLQD--DSYYVRRAAAYALGKIGD--ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERA 82 (211)
T ss_dssp GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGG
T ss_pred HhHHHHHHHHHcC--CCHHHHHHHHHHHHHhCC--ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHH
Confidence 3444555555553 345666666666665443 1222 67788899999999999999842 247
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCC
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~ 285 (390)
++.|+.+|.+++..+|..|+++|+.+-. ...++.|..+|.++ +..+|..|+..|..+- +
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~-------~- 141 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE--DWFVRIAAAFALGEIG-------D- 141 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC-------C-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcC-------C-
Confidence 8999999998888899999999998731 24678888988876 6778999999998874 1
Q ss_pred CCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 286 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
...++.|..++.+++..++..|+.+|..+-
T Consensus 142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 357888999998889999999999888874
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.6e-06 Score=72.97 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=97.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|+++++.+|..|+++|+.+.. .+.++.|+.+|.+++..+|..|+++|+.+- . ...+
T Consensus 21 ~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--~---------~~~~ 78 (201)
T 3ltj_A 21 KNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--D---------ERAV 78 (201)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGH
T ss_pred HHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--C---------HHHH
Confidence 46789999999999999998742 257999999999888889999999998863 1 2567
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+.|..+|.++ +..+|..|++.|..+- + ...++.|+.+|.+++..++..|+.+|..+..
T Consensus 79 ~~L~~~l~d~--~~~vr~~a~~aL~~~~-------~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 79 EPLIKALKDE--DGWVRQSAAVALGQIG-------D---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHC-------C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHhC-------c---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 8889999876 6779999999998874 1 3578889999999999999999999998754
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.2e-06 Score=72.88 Aligned_cols=116 Identities=17% Similarity=0.163 Sum_probs=97.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.++++.+|..|+++|+.+.. .++++.|+.++.+++..+|..|+++|+.+-. .+.+
T Consensus 26 ~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~ 83 (211)
T 3ltm_A 26 KNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAV 83 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHH
Confidence 35788999999999999998743 2579999999999888999999999998731 3567
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+.|..+|.++ +..+|..|+..|..+. ....++.|+.+|.+++..++..|+.+|..+..
T Consensus 84 ~~L~~~l~~~--~~~vr~~a~~aL~~~~----------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 84 EPLIKALKDE--DGWVRQSAAVALGQIG----------------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHC----------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHhC----------------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 8899999876 6779999999998874 13578899999999999999999999998853
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-05 Score=73.04 Aligned_cols=166 Identities=10% Similarity=0.110 Sum_probs=121.8
Q ss_pred CCCHHHHHHHHHHHHHhhccc---cccc---------ccCC-CCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHH
Q 016423 144 TLSLEDSQRALQELLILVEPI---DNAN---------GQLN-HPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKL 209 (390)
Q Consensus 144 ~~s~e~~~~aLd~Le~lve~I---DnAn---------~lL~-s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~L 209 (390)
+.+-.+|..|+..|..+++.- ...+ ..|. .++..||..|+.++|.++.. .+.....+- ..+|.|
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~--~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS--ACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHH
Confidence 345677777888877777651 1111 4563 78999999999999999864 222222222 379999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCC-Cc
Q 016423 210 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EP 288 (390)
Q Consensus 210 l~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~-~~ 288 (390)
+..+.+.+..+|..|..||.+++...+ ... -++.|...|.++ +.++|..++.+|..++.. ..++ ..
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~-----ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~----~~~~~~~ 170 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYASTS--LEA-----QQESIVESLSNK--NPSVKSETALFIARALTR----TQPTALN 170 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTSC--HHH-----HHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT----CCGGGCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcCC--HHH-----HHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----cCCCCcc
Confidence 999999888999999999999988653 222 246677778876 578999999999998741 2222 22
Q ss_pred hhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 289 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 289 ~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.... ..+++.++.+|...+..+|..|..++..|...
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2222 37899999999999999999999999999864
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-05 Score=73.91 Aligned_cols=160 Identities=11% Similarity=0.044 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc---ccccc-----ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP---IDNAN-----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVL 201 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~---IDnAn-----~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~l 201 (390)
.+.+...++.+.++ +..-+..|...|-.+-.. ++..- .+++++++.||..|+++||.+...+|....
T Consensus 53 ~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~--- 127 (280)
T 1oyz_A 53 QDAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP--- 127 (280)
T ss_dssp HHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH---
T ss_pred chHHHHHHHHHcCC--CHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH---
Confidence 34555555656543 345566666666554321 11100 134678888999999999998766554332
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhh
Q 016423 202 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 281 (390)
Q Consensus 202 e~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~ 281 (390)
.+++.|+.++++++..+|..|+++|+.+.. ...++.|..++.++ +..+|..|++.|..+..
T Consensus 128 --~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~---- 188 (280)
T 1oyz_A 128 --KIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDP--NGDVRNWAAFAININKY---- 188 (280)
T ss_dssp --HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCS--SHHHHHHHHHHHHHHTC----
T ss_pred --HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHhhcc----
Confidence 357888888888888888888888887532 24678888888876 56688888888877631
Q ss_pred cCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 282 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 282 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
. ...+++.++.+|..++..++..|+.+|+.+.
T Consensus 189 -~---------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 189 -D---------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -C---------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -C---------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 1 1245667777777777777777777777654
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.25 E-value=3e-05 Score=72.23 Aligned_cols=126 Identities=13% Similarity=0.036 Sum_probs=94.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~-LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+|.++++.+|..|+++||.+......... .++.|.. ++++++..+|..|+++|+.+..+++.... ..
T Consensus 61 ~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~ 129 (280)
T 1oyz_A 61 EFCSDKNYIRRDIGAFILGQIKICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KI 129 (280)
T ss_dssp HHHTCSSHHHHHHHHHHHHHSCCCTTTHHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HH
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccchH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HH
Confidence 467888999999999999998543221111 2344442 45666788999999999999866554322 34
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
++.|..+|.++ +..+|..|++.|..+. + .+.++.|+.+|.+++..++..|+.+|..+.
T Consensus 130 ~~~L~~~l~d~--~~~vR~~a~~aL~~~~-------~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 130 VEQSQITAFDK--STNVRRATAFAISVIN-------D---------KATIPLLINLLKDPNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHTC-------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCC--CHHHHHHHHHHHHhcC-------C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 67888889876 6778999999988765 1 247899999999999999999999998885
|
| >3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.4e-06 Score=80.30 Aligned_cols=126 Identities=16% Similarity=0.200 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhhccccccc-------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHH
Q 016423 147 LEDSQRALQELLILVEPIDNAN-------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMK 211 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~IDnAn-------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~ 211 (390)
.+....|||.|+++-|+|...- -+..+.++.+|..|+.+||.+.+|||.+-+.+.+. ..+..++.
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 3456778899999998887653 23456778899999999999999999999988875 34444443
Q ss_pred hhcC-------CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 212 MVKS-------SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 212 LL~s-------~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
-|.. ....+...-+++|..|+.+. ..| ...|+..|..++...+.+..+|+|++-+|.++..
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 3322 23455667799999999885 334 3678888888886433367789999999999984
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=8.1e-06 Score=88.31 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=109.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|++++..+|..|+++||.++...+..-...+ .+++|.|+.++++++..||..|+|+|+.++.+.++....-+-.+-+
T Consensus 366 ~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 444 (852)
T 4fdd_A 366 ELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 444 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 567889999999999999999988764322222 3578999999998888999999999999987643321111223556
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+.|...|.++ +.++|..|++.|.+++... .+...+.+ .++++.++.+++..+......++.++..++.
T Consensus 445 ~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~----~~~l~~~l--~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 445 TELLKRILDS--NKRVQEAACSAFATLEEEA----CTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp HHHHHHHTCS--SHHHHHHHHHHHHHHHHHH----GGGGGGGH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHHHh----hHhhHhHH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 7888888775 6789999999999999632 23333332 5778888888887777777778888888874
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.5e-05 Score=73.25 Aligned_cols=172 Identities=9% Similarity=0.050 Sum_probs=124.1
Q ss_pred CCCHHHHHHHHHHHHH-hhcc---cc--ccc---------ccC-CCCChHHHHHHHHHHHHHhhC-C-hHHH-HHHHhcC
Q 016423 144 TLSLEDSQRALQELLI-LVEP---ID--NAN---------GQL-NHPDTDIRKISAWILGKASQN-N-PLVQ-KQVLELG 204 (390)
Q Consensus 144 ~~s~e~~~~aLd~Le~-lve~---ID--nAn---------~lL-~s~~~~vR~~Aa~vLgta~QN-N-p~~Q-~~~le~g 204 (390)
+..-.+|..|++.|.. +++. |. .++ +.| +..+..+|..|+.+||.++.. . +..+ .....
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~-- 104 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL-- 104 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--
Confidence 3567788888888888 7753 32 222 455 578899999999999999854 2 3343 33332
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCC
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 284 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~ 284 (390)
.+|.++..+.+....|+..+.+|+-+++.+.++.....+-..-++.|...|+++ +..+|.-++.+|..++.. .
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~-----~ 177 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKE-----E 177 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH-----C
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH-----c
Confidence 699999999988889999999999999987643211100012356777888876 568999999999999852 2
Q ss_pred CCCchh---hhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 285 KVEPPL---FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 285 ~~~~~~---l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+..... .....+++.+..++..++..+|+.|..++..+..
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 221122 2236899999999999999999999999999875
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-05 Score=86.06 Aligned_cols=180 Identities=15% Similarity=0.083 Sum_probs=130.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-------------ccCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHH
Q 016423 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-------------GQLNHPDTDIRKISAWILGKASQN-NPLVQKQVL 201 (390)
Q Consensus 136 ~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-------------~lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~l 201 (390)
.++.|++ .+.++|..|+-.|..++++-.+-. .+|..++.+||..|+++|++++.. ++.+...++
T Consensus 39 ll~~L~S--~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~ 116 (684)
T 4gmo_A 39 VLKDLKS--PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY 116 (684)
T ss_dssp HHHHHSS--SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHcCC--CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 4555654 456788889999998887522211 678889999999999999999987 689999999
Q ss_pred hcCcHHHHHHhhcCCC--------------H-------HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcC-CC
Q 016423 202 ELGALSKLMKMVKSSF--------------V-------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-SS 259 (390)
Q Consensus 202 e~g~l~~Ll~LL~s~~--------------~-------~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s-~~ 259 (390)
..|++++|+.++.+.. . .+...++++|.+|+-+...+...+...++++.|+..|.+ +.
T Consensus 117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~ 196 (684)
T 4gmo_A 117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADI 196 (684)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCC
T ss_pred HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 9999999999985321 1 123467889999998888888899889999999998853 32
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchH---HHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 260 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK---SVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 260 ~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~---~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
....++..|+.+|+.|+. .++.....+.+.+... .+..+.++.+ ..+.-+...|.++.
T Consensus 197 ~~~~v~~~a~~~L~~ls~-----dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 197 APQDIYEEAISCLTTLSE-----DNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp SCHHHHHHHHHHHHHHHT-----TCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-----cCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 356789999999999984 4555666666665432 3333333333 34445556666654
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.00 E-value=6.3e-07 Score=75.26 Aligned_cols=112 Identities=10% Similarity=0.076 Sum_probs=89.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|+++++.+|..|+++|+.+.. ..++.|+.+|++++..+|..|+++|+.+-. ...+
T Consensus 19 ~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~ 75 (131)
T 1te4_A 19 SHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAV 75 (131)
T ss_dssp --CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHH
Confidence 46788999999999999987632 136999999998888999999999998731 1247
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 321 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~ 321 (390)
+.|..+|.++ +..+|..|++.|..+- ....++.|..+|..+|..++..|..+|..
T Consensus 76 ~~L~~~L~d~--~~~VR~~A~~aL~~~~----------------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 76 EPLIKLLEDD--SGFVRSGAARSLEQIG----------------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHC--CTHHHHHHHHHHHHHC----------------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHhC----------------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8888888765 6678999999998874 13567889999998899999999888754
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00011 Score=76.66 Aligned_cols=152 Identities=17% Similarity=0.133 Sum_probs=103.8
Q ss_pred HhHHHHHHHHHHc-CCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc-ccccc-------ccCCCCChHHHHHH
Q 016423 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNAN-------GQLNHPDTDIRKIS 182 (390)
Q Consensus 112 ~r~~~L~eal~~~-~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~-IDnAn-------~lL~s~~~~vR~~A 182 (390)
+|++-+++++..+ .|.+-....-..++.+.+ ...+.|..+.--+..+.+. -|.+- +-|+++++.+|..|
T Consensus 29 ~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s--~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~A 106 (591)
T 2vgl_B 29 KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQT--DNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALA 106 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSS--SCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3666666666544 233323344445554433 3455554443333333331 22221 56889999999999
Q ss_pred HHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhH
Q 016423 183 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 262 (390)
Q Consensus 183 a~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~ 262 (390)
..+||++. +|..-.. .+|.+.+++.+.++.||.+|++|+..+.+.+|.... ..+.++.|..+|.++ ++
T Consensus 107 L~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~--d~ 174 (591)
T 2vgl_B 107 VRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADS--NP 174 (591)
T ss_dssp HHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCS--CH
T ss_pred HHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCC--Ch
Confidence 99999985 4443333 468899999988899999999999999998876543 245578999999876 67
Q ss_pred HHHHHHHHHHHHHhh
Q 016423 263 RLHRKAVSLVGDLAK 277 (390)
Q Consensus 263 klr~KA~~LLs~L~~ 277 (390)
.++..|+.+|..++.
T Consensus 175 ~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 175 MVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHh
Confidence 799999999999984
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=97.98 E-value=9.2e-05 Score=75.09 Aligned_cols=138 Identities=12% Similarity=0.037 Sum_probs=75.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|..++..||..|+.+++.++..... .+.-...+|.|+.++.+++..+|..++++++.++....+ .++...-+
T Consensus 448 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~ 521 (588)
T 1b3u_A 448 AWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ---DITTKHML 521 (588)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 345556666666666666666554221 111223566666666555556666666666666654322 12223455
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
+.|...+.++ +..+|..++..+..++.. .+ ..+....+++.+..++...|.++++.|..++..|
T Consensus 522 ~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~----~~----~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 522 PTVLRMAGDP--VANVRFNVAKSLQKIGPI----LD----NSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SC----HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHhhCCCC--CchHHHHHHHHHHHHHHH----hc----hhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 6666666654 345666666666666631 11 1122334555555555555666666666666554
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0007 Score=63.56 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=123.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHh
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 212 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~L 212 (390)
||++++.+... +++. ..|.+ +|+..++.++.+|..+|+.+...-|+.-....=...+|.++.+
T Consensus 21 iK~a~ela~~~----e~~l---~~L~~----------LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~l 83 (265)
T 3b2a_A 21 ILDAVSLALED----KRAL---FLILE----------LAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINA 83 (265)
T ss_dssp HHHHHHHHHHC----HHHH---HHHHH----------HTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc----hhHH---HHHHH----------HHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 77777766654 3344 34433 3567889999999999999988865555544444579999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCccchHHHHHc---------------------------------CcHHHHHHHhcCCC
Q 016423 213 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE---------------------------------AGDLMLQDILGNSS 259 (390)
Q Consensus 213 L~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~---------------------------------gGl~~L~~lL~s~~ 259 (390)
+.+++..+..+|+-+|.-++-+.|...+.|... +-+..|..++.++
T Consensus 84 lk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Sk- 162 (265)
T 3b2a_A 84 LSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSP- 162 (265)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCS-
T ss_pred HhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCC-
Confidence 999998899999999999999988765544321 1235566777555
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 260 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 260 ~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+.++|.-+..++.++... ..++... .+++.-+..+|++.|+.++|+|+.++..+++.
T Consensus 163 -d~~vK~agl~~L~eia~~---S~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 163 -DLYTKVAGFCLFLNMLNS---SADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp -SHHHHHHHHHHHHHHGGG---CSSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred -ChhHHHHHHHHHHHhhcc---cCCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 788888888889988852 2333333 35666788999999999999999999999975
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00014 Score=73.73 Aligned_cols=125 Identities=11% Similarity=0.016 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHHhhccccccc----------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc
Q 016423 145 LSLEDSQRALQELLILVEPIDNAN----------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 214 (390)
Q Consensus 145 ~s~e~~~~aLd~Le~lve~IDnAn----------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~ 214 (390)
.+.+-|..+.+.|..+++.+.... .+++++++.+|..|+.+++.++...+.- ......+|.+..+++
T Consensus 176 ~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~ 252 (588)
T 1b3u_A 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAE 252 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHcc
Confidence 356667777888777776554321 4567888899999999999998775432 222347888888888
Q ss_pred CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 215 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 215 s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+++..+|..|+.+|+.++...++. .....-++.+..++.++ +..+|..|+..+..++.
T Consensus 253 d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 253 DKSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCE 310 (588)
T ss_dssp CSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHH
Confidence 877889999999999988764331 22345578888888876 56789999999998875
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00039 Score=72.57 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=108.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+++.+++..+|..+.-.+...+..+|.... -+++.|.+-+.++++.+|.-|+.+|+++. .+.....+ +
T Consensus 56 ~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~ 123 (591)
T 2vgl_B 56 NCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYL-----C 123 (591)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHH-----H
T ss_pred HHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHH-----H
Confidence 578899999999999999999887775532 24678888899888889999999999984 33333332 4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+.+..+|.++ ++.+|.+|+..+..+.. .+++ .+.+.++++.+..+|..+|+.++..|+.+|..+....
T Consensus 124 ~~l~~~L~d~--~~~VRk~A~~al~~i~~-----~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 124 EPLRKCLKDE--DPYVRKTAAVCVAKLHD-----INAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHHHHHSSCS--CHHHHHHHHHHHHHHHH-----SSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHcCCC--ChHHHHHHHHHHHHHHh-----hChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence 6788888876 78899999999999984 3444 3344689999999999999999999999999998754
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00037 Score=74.20 Aligned_cols=172 Identities=8% Similarity=0.090 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhhccccccc---------ccCCCCChHHHHHHHHHHHHHhhCCh-HHHHHHHhcCcHHHHHHhhcCCC
Q 016423 148 EDSQRALQELLILVEPIDNAN---------GQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSSF 217 (390)
Q Consensus 148 e~~~~aLd~Le~lve~IDnAn---------~lL~s~~~~vR~~Aa~vLgta~QNNp-~~Q~~~le~g~l~~Ll~LL~s~~ 217 (390)
.-+..+.+.|..+.......- ..|.+++..+|..|++++|.++.... ..-...+. ..+|.|+..+.+++
T Consensus 346 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~ 424 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS 424 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC
T ss_pred cHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc
Confidence 345556666666555443211 56778889999999999999997642 32222232 47899999999888
Q ss_pred HHHHHHHHHHHHHHhhCCccch--HHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC-CCCCchhhhhc
Q 016423 218 VEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM-HKVEPPLFRDR 294 (390)
Q Consensus 218 ~~vr~kAL~ALSsLiR~~~~a~--~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~-~~~~~~~l~~~ 294 (390)
..+|..++|+++.++...++.. ..+ -..-++.|...+.++ .+++..|++.+.+++.... +. .+...+.+ .
T Consensus 425 ~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~-~~~~~~l~~~~--~ 497 (861)
T 2bpt_A 425 LQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLA-EATPSPIYNFY--P 497 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHS-SSSSCGGGGGH--H
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcc-cccchhhHHHH--H
Confidence 8999999999999987644321 111 123467788888763 6789999999999985310 00 11222222 3
Q ss_pred CchHHHHHhhcCCC--hhHHHHHHHHHHHHHhcCh
Q 016423 295 FFLKSVVDLTASAD--LDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 295 g~v~~Lv~lL~~~d--~~v~EkAL~aL~~L~~~~~ 327 (390)
.+++.++.++.+.| ..++..++.+|..++...+
T Consensus 498 ~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 498 ALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 56788888888644 7899999999999987543
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00046 Score=74.50 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 173 HPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
.++.+++..++++||.+++. .+..+..+...+.++.++..+.+++..+|..|.++++.+++.++.....+... -++.|
T Consensus 597 ~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~-~lp~l 675 (852)
T 4fdd_A 597 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPIL 675 (852)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHH-HHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHH
Confidence 45678999999999999886 34555555567899999999988888999999999999999887665554433 56788
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHhcC
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~~~ 326 (390)
...|..+ +..++..|+|++..++... +++..+.+ ..+++.|+.+|.++ +..+++.+..+|+.|....
T Consensus 676 ~~~l~~~--~~~v~~~a~~alg~i~~~~----~~~~~p~~--~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~ 744 (852)
T 4fdd_A 676 GTNLNPE--FISVCNNATWAIGEISIQM----GIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC 744 (852)
T ss_dssp HHTCCTT--SHHHHHHHHHHHHHHHHHH----GGGGGGGT--HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCcc--chHHHHHHHHHHHHHHHHh----hHhHHHHH--HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhC
Confidence 8888654 5678999999999998632 23344443 58899999999876 4589999999999999753
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=97.71 E-value=9.1e-05 Score=72.76 Aligned_cols=187 Identities=10% Similarity=0.018 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc---------------ccccc---------ccCCCCChHHHHHHHH
Q 016423 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP---------------IDNAN---------GQLNHPDTDIRKISAW 184 (390)
Q Consensus 129 d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~---------------IDnAn---------~lL~s~~~~vR~~Aa~ 184 (390)
.+..+...+.++.+.+.+..-|..|.--|..++.. ++... ..|.++++.+ ..++.
T Consensus 33 ~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~ 111 (462)
T 1ibr_B 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQ 111 (462)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHH
T ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHH
Confidence 35566777788887666777777776666655532 22211 4567777888 89999
Q ss_pred HHHHHhhCC-hHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhCC-ccchHHHHHcCcHHHHHHHhcCCCh
Q 016423 185 ILGKASQNN-PLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSF 260 (390)
Q Consensus 185 vLgta~QNN-p~~Q~~~le~g~l~~Ll~LL~s~--~~~vr~kAL~ALSsLiR~~-~~a~~~f~~~gGl~~L~~lL~s~~~ 260 (390)
+|+.++... |. .. -.+.+|.|+..+.++ +..++..|+.+++.+++.. +.....+. ..-++.+..+|.++..
T Consensus 112 ~i~~ia~~~~~~-~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 112 CVAGIACAEIPV-NQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHHHHHHHHGGG-TC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHhccc-cc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCC
Confidence 999997653 21 01 136899999999887 7788999999999999875 32222222 2356788888887522
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 261 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 261 d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+..+|..|+..+.+++... +.... ......-+++.+...+.+++.+++..++.+|..++..
T Consensus 187 ~~~vr~~a~~~l~~~~~~~-~~~~~---~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFT-KANFD---KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTT-HHHHT---SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HHhhh---hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 5678999999999876310 00000 0011122466777777888999999999999999864
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00039 Score=74.13 Aligned_cols=151 Identities=15% Similarity=0.200 Sum_probs=107.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCCh-HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccch--HHHHHc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVE 245 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp-~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~--~~f~~~ 245 (390)
..|.+++..+|..|++++|.++...+ ..-..++ ...+|.|+..+++++..+|..|+++|+.++...++.. ..+ -.
T Consensus 373 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~ 450 (876)
T 1qgr_A 373 EHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LA 450 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HH
T ss_pred HHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HH
Confidence 56778899999999999999998754 3222222 3479999999998888999999999999999876531 111 13
Q ss_pred CcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc----------CCCCCchhhhhcCchHHHHHhhcCC---ChhHH
Q 016423 246 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN----------MHKVEPPLFRDRFFLKSVVDLTASA---DLDLQ 312 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~----------~~~~~~~~l~~~g~v~~Lv~lL~~~---d~~v~ 312 (390)
.-++.|...|.++ .+++..++++|.+++....+. ......+.+ ..+++.+..++... +..++
T Consensus 451 ~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 451 PLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp HHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHH
Confidence 4567777777763 678999999999999632100 001123333 35788888888764 35788
Q ss_pred HHHHHHHHHHHhcC
Q 016423 313 EKALAAIKNLLQLR 326 (390)
Q Consensus 313 EkAL~aL~~L~~~~ 326 (390)
..++.++..|+...
T Consensus 526 ~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 526 SSAYESLMEIVKNS 539 (876)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHC
Confidence 89999999888653
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.001 Score=74.72 Aligned_cols=147 Identities=10% Similarity=0.073 Sum_probs=108.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-----hHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----QEMFY 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-----~~~f~ 243 (390)
+.|.++++.+|..|+.+|+.++...+.- .+ ...++.|+..+.+++..+|..|..+|+.++...++. .....
T Consensus 55 ~~L~d~~~~vR~~A~~~L~~l~~~~~~~---~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~ 130 (1230)
T 1u6g_C 55 KLLEDKNGEVQNLAVKCLGPLVSKVKEY---QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV 130 (1230)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTSCHH---HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCCHH---HH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH
Confidence 3567889999999999999999876541 11 136788888888877788999999999999876653 11222
Q ss_pred HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 244 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 244 ~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
-..-++.|...+.++ .+.+++..|+..+..++.. ..+...+.+ ..+++.+...|.+++..+++.|+.+|..++
T Consensus 131 ~~~llp~L~~~l~~~-~~~~~~~~al~~l~~~~~~----~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQ-EDVSVQLEALDIMADMLSR----QGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp HHHHHHHHHHHHSCC-SCHHHHHHHHHHHHHHHHH----TCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHH----hHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 345678888888742 2677899999999999852 222233322 467888888888888999999999999998
Q ss_pred hcC
Q 016423 324 QLR 326 (390)
Q Consensus 324 ~~~ 326 (390)
...
T Consensus 204 ~~~ 206 (1230)
T 1u6g_C 204 MSC 206 (1230)
T ss_dssp TTC
T ss_pred Hhc
Confidence 753
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00078 Score=70.88 Aligned_cols=163 Identities=11% Similarity=0.030 Sum_probs=121.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhh---ccccccc----ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH
Q 016423 139 DLNNSTLSLEDSQRALQELLILV---EPIDNAN----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 211 (390)
Q Consensus 139 ~l~~~~~s~e~~~~aLd~Le~lv---e~IDnAn----~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~ 211 (390)
.|+++ +...|..++..+.++. ++++.+. +++.+++..+|..+.-.+...+..+|..-.. +++.|.+
T Consensus 42 ~l~~~--~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~k 114 (618)
T 1w63_A 42 SFREE--DNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKN 114 (618)
T ss_dssp HHTTT--CTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHH
T ss_pred HhhCC--CHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHH
Confidence 45554 3456777777766643 2333332 6777899999999999999998888753222 4677888
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhh
Q 016423 212 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 291 (390)
Q Consensus 212 LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l 291 (390)
-|.+.++.+|.-|+.+||++.. +. + ...-++.+..+|.++ ++.+|++|+..+..+.. .+++..
T Consensus 115 DL~~~n~~vr~lAL~~L~~i~~--~~----~-~~~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~-----~~p~~v--- 177 (618)
T 1w63_A 115 DLNHSTQFVQGLALCTLGCMGS--SE----M-CRDLAGEVEKLLKTS--NSYLRKKAALCAVHVIR-----KVPELM--- 177 (618)
T ss_dssp HHSCSSSHHHHHHHHHHHHHCC--HH----H-HHHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHH-----HCGGGG---
T ss_pred hcCCCCHhHHHHHHHHHHhcCC--HH----H-HHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH-----HChHHH---
Confidence 8888888899999999999852 21 1 134467888888876 67899999999999985 244332
Q ss_pred hhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 292 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 292 ~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
.++++.+..+|...|+.++-.|+.+|..+....+
T Consensus 178 --~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 178 --EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp --GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred --HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence 2788889999999999999999999999987543
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00044 Score=72.78 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=102.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+-|+++++-+|..|+++||.+. ++.. . ...++.+.+++.+.++.||.+|+.|+..+.+.+|.... +-+
T Consensus 114 kDL~~~n~~vr~lAL~~L~~i~--~~~~----~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~ 181 (618)
T 1w63_A 114 NDLNHSTQFVQGLALCTLGCMG--SSEM----C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFL 181 (618)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHC--CHHH----H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGG
T ss_pred HhcCCCCHhHHHHHHHHHHhcC--CHHH----H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHH
Confidence 5678999999999999999996 2432 2 24688999999998899999999999999999887554 345
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcC---------------CChhHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQE 313 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~---------------~d~~v~E 313 (390)
+.+..+|.++ ++.++..|+.+|..++. .+++....+ ..+++.++.+|.. .++-.|-
T Consensus 182 ~~l~~lL~D~--d~~V~~~Al~~L~~i~~-----~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 182 PATKNLLNEK--NHGVLHTSVVLLTEMCE-----RSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp GGTTTSTTCC--CHHHHHHHHHHHHHHCC-----SHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred HHHHHHhCCC--CHhHHHHHHHHHHHHHH-----hChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 6777888775 67789999999999984 222221222 2567777776642 4777888
Q ss_pred HHHHHHHHHHhc
Q 016423 314 KALAAIKNLLQL 325 (390)
Q Consensus 314 kAL~aL~~L~~~ 325 (390)
+++++|..+...
T Consensus 253 ~il~~L~~l~~~ 264 (618)
T 1w63_A 253 RILRLLRILGRN 264 (618)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHhCCC
Confidence 888888888764
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.004 Score=58.44 Aligned_cols=169 Identities=12% Similarity=0.023 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHHhhcccccc-------c----------ccCCCCChHHHHHHHHHHHHHhhCChH-----HHHHHHhc
Q 016423 146 SLEDSQRALQELLILVEPIDNA-------N----------GQLNHPDTDIRKISAWILGKASQNNPL-----VQKQVLEL 203 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnA-------n----------~lL~s~~~~vR~~Aa~vLgta~QNNp~-----~Q~~~le~ 203 (390)
.=.+|..|+++|..++.....- . +.+...|..+...|+.+|..++..-.. ......-.
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 4456777777777766542110 0 455678899999999999998875221 11111222
Q ss_pred CcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc
Q 016423 204 GALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 282 (390)
Q Consensus 204 g~l~~Ll~-LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~ 282 (390)
.++|.|+. .+.+....++.+|+.++..++....+.... ++.+...+.+. +++++.-++..|..++.+.
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~------~e~l~~~l~~K--npkv~~~~l~~l~~~l~~f--- 170 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS------VELVIPFFEKK--LPKLIAAAANCVYELMAAF--- 170 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH------HHHHGGGGGCS--CHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHHHhcc--CHHHHHHHHHHHHHHHHHh---
Confidence 46788885 477777888999999998887654443222 24566667766 6889999999999988642
Q ss_pred CCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 283 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 283 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+.........-..+++.+..+|.+.|.+||+.|..++..+...
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 1111111111234667788889999999999999999998865
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00069 Score=66.39 Aligned_cols=147 Identities=7% Similarity=0.032 Sum_probs=100.3
Q ss_pred cCCCC--ChHHHHHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCccchH--HH
Q 016423 170 QLNHP--DTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQE--MF 242 (390)
Q Consensus 170 lL~s~--~~~vR~~Aa~vLgta~QNN-p~~Q~~~le~g~l~~Ll~LL~s~--~~~vr~kAL~ALSsLiR~~~~a~~--~f 242 (390)
.+.++ ++.+|..|+.+++.++... +..-..... ..++.++.++.++ +..+|..|+.++++++........ .+
T Consensus 136 ~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 214 (462)
T 1ibr_B 136 NVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE 214 (462)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45566 8899999999999998864 332121222 3688899999887 678999999999997644322111 11
Q ss_pred HHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 243 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 243 ~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
.. --++.|...+.++ +..+|..++.+|..++.. ..+.+.+.+ ..++++.++..+...+.+++..++.++..+
T Consensus 215 ~~-~l~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~----~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 215 RH-FIMQVVCEATQCP--DTRVRVAALQNLVKIMSL----YYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HH-HHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH----CGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 10 0245555556554 677899999999999852 111122222 227778888888888999999999999888
Q ss_pred Hhc
Q 016423 323 LQL 325 (390)
Q Consensus 323 ~~~ 325 (390)
...
T Consensus 287 ~~~ 289 (462)
T 1ibr_B 287 CDE 289 (462)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.004 Score=69.86 Aligned_cols=189 Identities=15% Similarity=0.136 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc---------ccCCCCChHHHHHHHHHHHHHhhCChHH-----
Q 016423 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN---------GQLNHPDTDIRKISAWILGKASQNNPLV----- 196 (390)
Q Consensus 131 ~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn---------~lL~s~~~~vR~~Aa~vLgta~QNNp~~----- 196 (390)
..+...++.+.+ .+.+.|..|...|..+++.+.... ..|.++++.+|..|+.+|+.++..-+..
T Consensus 48 ~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 48 KVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp HHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 566667777763 467778888888888777654322 4567888899999999999998764432
Q ss_pred -HHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 016423 197 -QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 274 (390)
Q Consensus 197 -Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~ 274 (390)
+.... ...+|.|+..+. +++..++..|+.+++.++..++.....+. ..-++.|...|.++ +..+|.+|+..|..
T Consensus 126 ~~~~~~-~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~--~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 126 LAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSP--RLAVRKRTIIALGH 201 (1230)
T ss_dssp THHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCS--SHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCC--cHHHHHHHHHHHHH
Confidence 22222 247899999998 46678999999999999976554333221 33456677777765 56789999988888
Q ss_pred Hhhhh---------------hhcC-CCCCch---------------hhh--hcCchHHHHHhhcCCChhHHHHHHHHHHH
Q 016423 275 LAKCQ---------------LENM-HKVEPP---------------LFR--DRFFLKSVVDLTASADLDLQEKALAAIKN 321 (390)
Q Consensus 275 L~~~~---------------l~~~-~~~~~~---------------~l~--~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~ 321 (390)
++... +... ++..+. .+. -..+++.+...+..++.++++.++.++..
T Consensus 202 l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~ 281 (1230)
T 1u6g_C 202 LVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFES 281 (1230)
T ss_dssp HTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 76421 0000 011111 010 13567777777887888999999999999
Q ss_pred HHhc
Q 016423 322 LLQL 325 (390)
Q Consensus 322 L~~~ 325 (390)
++..
T Consensus 282 l~~~ 285 (1230)
T 1u6g_C 282 FVRR 285 (1230)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8874
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00056 Score=62.65 Aligned_cols=141 Identities=14% Similarity=0.086 Sum_probs=106.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
..+++.+-..|..|+..|+.++..+|.....-+ ...++.|..++. +.+..++..|+.+++.++++-.+....+ ...-
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~-~~~i 99 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY-ASAC 99 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-HHHH
Confidence 456788999999999999999988654311101 135778888884 7778899999999999997654433332 2345
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
++.|...+.++ ...+|..|..+|..++. ... + ..+++.+...|.+.+..+++.++.+|..++..
T Consensus 100 lp~ll~~l~d~--~~~vr~~a~~aL~~~~~------~~~----~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 100 VPSLLEKFKEK--KPNVVTALREAIDAIYA------STS----L--EAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HHHHHHGGGCC--CHHHHHHHHHHHHHHHT------TSC----H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHHH------cCC----H--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 78888888886 56789999999999984 111 1 24778889999999999999999999997653
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00011 Score=61.22 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=64.3
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+|+++++.||..|+++||.+.. + .+++.|+.++++++..||..|++||+.+- ....++
T Consensus 50 ~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-----------~~~a~~ 107 (131)
T 1te4_A 50 SLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG-----------GERVRA 107 (131)
T ss_dssp GGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC-----------SHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHH
Confidence 4667899999999999999842 1 25899999998888899999999999873 123578
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHH
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGD 274 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~ 274 (390)
.|..++.++ +..+|..|+..|..
T Consensus 108 ~L~~~l~d~--~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 108 AMEKLAETG--TGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHh
Confidence 889999865 56688888877653
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00093 Score=71.25 Aligned_cols=138 Identities=9% Similarity=0.039 Sum_probs=101.1
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc-chHHHHHcCcHHHHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQ 252 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~-a~~~f~~~gGl~~L~ 252 (390)
++..+|..|+.+++.+++..+. .++. ..+|.+...+.+.+..+|..|+++++++..+..+ ....+. ..-++.|.
T Consensus 340 ~~~~~r~~a~~~l~~l~~~~~~---~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~ 414 (876)
T 1qgr_A 340 DDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLI 414 (876)
T ss_dssp TCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCcH---hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHH
Confidence 4567999999999999877542 2222 4577777888877788999999999999987663 222322 44678888
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCC--CchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV--EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~--~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..|.++ +..+|..|++++..++... .+. ..+. -..+++.+...|..+ ..+++.++.+|..+...
T Consensus 415 ~~l~d~--~~~vr~~a~~~l~~~~~~~----~~~~~~~~~--l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 415 ELMKDP--SVVVRDTAAWTVGRICELL----PEAAINDVY--LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHTCS--SHHHHHHHHHHHHHHHHHC----GGGTSSTTT--HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHhCCC--CHHHHHHHHHHHHHHHHhC----chhcccHHH--HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 999876 5779999999999998621 111 1111 236677888888774 88999999999999863
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0035 Score=66.61 Aligned_cols=187 Identities=10% Similarity=0.044 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc----------------ccccc---------ccCCCCChHHHHHHHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP----------------IDNAN---------GQLNHPDTDIRKISAW 184 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~----------------IDnAn---------~lL~s~~~~vR~~Aa~ 184 (390)
+.....+++++.+.+.+.+-|..|.--|..+|.. ++... ..|.++++.+|..++.
T Consensus 38 ~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~ 117 (861)
T 2bpt_A 38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQ 117 (861)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 4566667777776655667776666666655531 33221 4567888999999999
Q ss_pred HHHHHhhCC-hHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccch---HHHHHcCcHHHHHHHhcCCC
Q 016423 185 ILGKASQNN-PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQ---EMFYVEAGDLMLQDILGNSS 259 (390)
Q Consensus 185 vLgta~QNN-p~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~---~~f~~~gGl~~L~~lL~s~~ 259 (390)
+|+.++... |.. .+ ...+|.|+..+.++ +..++..++.+++.++....+.. ..+ ...-++.+...+.++.
T Consensus 118 ~l~~i~~~~~p~~-~w---~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~ 192 (861)
T 2bpt_A 118 LIAAIADIELPHG-AW---PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTE 192 (861)
T ss_dssp HHHHHHHHHGGGT-CC---HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhhCccc-cc---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCC
Confidence 999997663 210 00 13688899999887 77889999999999998765431 111 1224566677777652
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 260 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 260 ~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.+..+|..|+..+..++... ............+++.+...+.+++..++..++.+|..++..
T Consensus 193 ~~~~vr~~al~~l~~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 193 TSKAVRLAALNALADSLIFI----KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp CCHHHHHHHHHHHHHHGGGC----HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH----HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 25678999999999876310 000000001123677777888888999999999999998863
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.013 Score=61.89 Aligned_cols=162 Identities=17% Similarity=0.097 Sum_probs=119.8
Q ss_pred CCCCHHHHHHHHHHHHHhh---ccccccc----ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC
Q 016423 143 STLSLEDSQRALQELLILV---EPIDNAN----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 215 (390)
Q Consensus 143 ~~~s~e~~~~aLd~Le~lv---e~IDnAn----~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s 215 (390)
+..+..+|..++-.+.++. ++++.+- +++.+++..+|..+--.+...+..+|..-.. +++.+.+=+.+
T Consensus 48 ~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~ 122 (621)
T 2vgl_A 48 KALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLAS 122 (621)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCC
Confidence 3456677777776665543 2333332 7888999999999999999999888754322 35566667778
Q ss_pred CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHh--cCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhh
Q 016423 216 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL--GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 293 (390)
Q Consensus 216 ~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL--~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~ 293 (390)
.++-+|.-|+.+||++. . +. +. ..-.+.+..+| .+. ++.+|.+|+..+..+.. .+|+..+ .
T Consensus 123 ~n~~ir~lALr~L~~i~-~-~e----~~-~~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~-----~~p~~~~---~ 185 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVG-S-RE----MA-EAFAGEIPKILVAGDT--MDSVKQSAALCLLRLYR-----TSPDLVP---M 185 (621)
T ss_dssp CCHHHHHHHHHHHHHHC-C-HH----HH-HHHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHH-----HCGGGCC---C
T ss_pred CCHHHHHHHHHHhhccC-C-HH----HH-HHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHH-----hChhhcC---c
Confidence 88888999999999983 2 22 21 23456778888 544 78899999999999995 2443322 3
Q ss_pred cCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 294 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 294 ~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+|++.+..+|...|+.++..|+.++..+....
T Consensus 186 ~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 186 GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 599999999999889999999999999988754
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0082 Score=58.91 Aligned_cols=148 Identities=14% Similarity=0.077 Sum_probs=113.0
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHc-CcHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLM 250 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~-gGl~~ 250 (390)
.+.+...+..|..-|..+.|..+..-..|++.+|+..|+++....+......+|.|+.++.- |..+...++.+ ..+.-
T Consensus 128 ~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~~~fI~~ 206 (339)
T 3dad_A 128 YSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAHSDTIQW 206 (339)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCCHHHHHH
Confidence 35566667788888888888777788889999999999999988877889999999999975 57777666643 46777
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh--------hc--CchHHHHHhhc---CCChhHHHHHHH
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR--------DR--FFLKSVVDLTA---SADLDLQEKALA 317 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~--------~~--g~v~~Lv~lL~---~~d~~v~EkAL~ 317 (390)
|..++.+. +..+.+.|+.+|-.++.. .+.....+. +. -....|+.+|+ +.|.+++.+|+.
T Consensus 207 lyslv~s~--~~~V~k~AL~LL~v~V~~-----se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 207 LYTLCASL--SRLVVKTALKLLLVFVEY-----SENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHcCc--cHHHHHHHHHHHHHHHcc-----CcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 78887764 677888899999999852 222222221 12 24678899997 679999999999
Q ss_pred HHHHHHhcCh
Q 016423 318 AIKNLLQLRT 327 (390)
Q Consensus 318 aL~~L~~~~~ 327 (390)
.+..+....+
T Consensus 280 LIN~lL~~ap 289 (339)
T 3dad_A 280 LINKTLAALP 289 (339)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHhcCC
Confidence 9988887654
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0021 Score=60.01 Aligned_cols=150 Identities=8% Similarity=0.010 Sum_probs=108.2
Q ss_pred ccCCCCChHHHHHHHHHHHH-HhhCChHHHHHHHh-cCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCc-cchH-HHH
Q 016423 169 GQLNHPDTDIRKISAWILGK-ASQNNPLVQKQVLE-LGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNL-AGQE-MFY 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgt-a~QNNp~~Q~~~le-~g~l~~Ll~LL-~s~~~~vr~kAL~ALSsLiR~~~-~a~~-~f~ 243 (390)
..+.|++-.-|..|...|+. ++.++|+....-.+ ...+..|.+.+ ++.+..++..|+.||+.++.+-. +... .+.
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 45688999999999999999 98777654310001 13467778888 56677889999999999997765 5544 332
Q ss_pred HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 244 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 244 ~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
.--++.++..+.+. ...++..+..++..++.. .++..... .-..+++.|...|++.+..+++.++.+|..++
T Consensus 103 -~~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~----~~~~~~~~-~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 103 -SLVFTPLLDRTKEK--KPSVIEAIRKALLTICKY----YDPLASSG-RNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp -HHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHH----SCTTCTTC-TTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH----ccccccCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 23578888888876 356888888888888852 23321110 01247788899999999999999999999999
Q ss_pred hcC
Q 016423 324 QLR 326 (390)
Q Consensus 324 ~~~ 326 (390)
...
T Consensus 175 ~~~ 177 (249)
T 2qk1_A 175 KEE 177 (249)
T ss_dssp HHC
T ss_pred HHc
Confidence 754
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.05 Score=53.37 Aligned_cols=181 Identities=15% Similarity=0.070 Sum_probs=127.2
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-ccccccc------------ccCCCCChHHHHHHHHHHHHHhhCCh
Q 016423 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNP 194 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lv-e~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp 194 (390)
++.....++++.|.+ .+.+++..+|..|..++ ++.|-|. +.....+...+..+..+++.+.-. .
T Consensus 115 sps~ra~~iiekL~~--~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v 191 (339)
T 3dad_A 115 QLSVRVNAILEKLYS--SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-V 191 (339)
T ss_dssp CHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-H
T ss_pred CcHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-c
Confidence 455778888888885 46788999999999844 6788887 334567889999999999999654 3
Q ss_pred HHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHH-------HcCc---HHHHHHHhcC-CChhH
Q 016423 195 LVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY-------VEAG---DLMLQDILGN-SSFEI 262 (390)
Q Consensus 195 ~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~-------~~gG---l~~L~~lL~s-~~~d~ 262 (390)
.--+.++++ ..|..|..++.+....|...|+.-|-++|-..+.+...+. ...| |+.|+.+|++ ++.|.
T Consensus 192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 333344433 5788899999976677877888888888777654443332 2334 8999999972 22478
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCC----CCchhhhhcCchHHHHHhhcCC--ChhHHHH
Q 016423 263 RLHRKAVSLVGDLAKCQLENMHK----VEPPLFRDRFFLKSVVDLTASA--DLDLQEK 314 (390)
Q Consensus 263 klr~KA~~LLs~L~~~~l~~~~~----~~~~~l~~~g~v~~Lv~lL~~~--d~~v~Ek 314 (390)
.++.+|..||..++... .+. +..+.+.+.|+-..+...++.. |.+++++
T Consensus 272 elq~~amtLIN~lL~~a---pd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 272 ELLVYTVTLINKTLAAL---PDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 89999999999998621 111 2344566677666666666654 5455444
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.011 Score=62.28 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhccccccc-------ccC--CCCChHHHHHHHHHHHHHhhCChHH
Q 016423 128 SDAQLIQIAIDDLNNS--TLSLEDSQRALQELLILVEPIDNAN-------GQL--NHPDTDIRKISAWILGKASQNNPLV 196 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~~--~~s~e~~~~aLd~Le~lve~IDnAn-------~lL--~s~~~~vR~~Aa~vLgta~QNNp~~ 196 (390)
.+.+.|.-++..+.+. +..+-.+--||-.|-.+.. -+.+. ++| .+.++-||..|+-++..+.+.+|..
T Consensus 104 ~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~ 182 (621)
T 2vgl_A 104 SNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL 182 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh
Confidence 4456555555544332 1234445556666654432 12222 678 8899999999999999999988854
Q ss_pred HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc
Q 016423 197 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 238 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a 238 (390)
-. ..++++.|.++|.+.+..|+..|+.++..++.+++..
T Consensus 183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH
Confidence 32 2478999999998888899999999999999887653
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.021 Score=53.65 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=93.4
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh-hhc
Q 016423 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ-LEN 282 (390)
Q Consensus 204 g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~-l~~ 282 (390)
+.+..|+.+|++++..++..++++|.-++..-+.....-.-..+++-++.++.++ +.|+-.||..+|..|+... +..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~--dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE--NEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST--THHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHcCCCCCH
Confidence 3578899999998899999999999999998776666666678999999999876 7899999999999998521 000
Q ss_pred ----------------CCC-----------CCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 283 ----------------MHK-----------VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 283 ----------------~~~-----------~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.++ ..+..-...+++..+..++.+.|..++..+++++.+++...
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 000 00001113567778888888899999999999999999854
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=95.81 E-value=1.4 Score=43.62 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=103.9
Q ss_pred HHHHhhCCh-HHHHHHHhcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhCCccchHHHHHcC-cHHHHH
Q 016423 186 LGKASQNNP-LVQKQVLELGALSKLMKMVKS-----------SFVEEAVKALYTVSSLIRNNLAGQEMFYVEA-GDLMLQ 252 (390)
Q Consensus 186 Lgta~QNNp-~~Q~~~le~g~l~~Ll~LL~s-----------~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g-Gl~~L~ 252 (390)
|-....++| ..=+.|. .+|+..|+.+|.. .+......++.||.+++ |+..+...+..+. ++..|.
T Consensus 91 L~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~ 168 (383)
T 3eg5_B 91 LRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLV 168 (383)
T ss_dssp HHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHH
Confidence 333334443 3334465 6789999999842 11234556777777776 6677888777654 689999
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC-ch----h------hhhcCchHHHHHhhcC-CChhHHHHHHHHHH
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PP----L------FRDRFFLKSVVDLTAS-ADLDLQEKALAAIK 320 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~-~~----~------l~~~g~v~~Lv~lL~~-~d~~v~EkAL~aL~ 320 (390)
.+|.++ .++++.-|+-+|..+|.. ..+.. .+ . ..+..-...+++.|.. .+.+++..++..+.
T Consensus 169 ~~L~s~--~~~~~~~aleLL~~lc~~----~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN 242 (383)
T 3eg5_B 169 RAMDPA--VPNMMIDAAKLLSALCIL----PQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN 242 (383)
T ss_dssp HTCCTT--SHHHHHHHHHHHHHHHTC----CSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred HHhCCC--chHHHHHHHHHHHHHHhC----cCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 998876 677888899999988841 11111 11 1 2334456778888887 58899999999999
Q ss_pred HHHhcChh------HHHHHHhhCCcHHHHHHHHH
Q 016423 321 NLLQLRTT------EALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 321 ~L~~~~~~------~r~~~~~~~gL~~~L~~Lr~ 348 (390)
.++...++ -|.+|. .+|+.+.+.+|+.
T Consensus 243 ~li~~~~dl~~R~~lR~ef~-~~Gl~~il~~lr~ 275 (383)
T 3eg5_B 243 ALITPAEELDFRVHIRSELM-RLGLHQVLQELRE 275 (383)
T ss_dssp HHHTTCCCHHHHHHHHHHHH-HTTHHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHH-HCChHHHHHHHhc
Confidence 99986543 344454 7999999988875
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.29 Score=48.29 Aligned_cols=131 Identities=11% Similarity=0.069 Sum_probs=83.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
++.+++..+|...--.+-..+..+ ++.++ +.+.|.+=++++++-+|.-|+-+++++.-. .-.+. -..
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~~---~e~iL---v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~-----l~~ 142 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCIA---EDVII---VTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQA-----IER 142 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTTS---SCGGG---GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHH-----HHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCCH---HHHHH---HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHH-----HHH
Confidence 556777777777776666665542 22222 456666666776766777888888877322 11122 234
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.+..+|.+. ++.+|++|+.....|+. ..|+ +++ +|+..+-+++...|+-++-+|+.+|..+...
T Consensus 143 ~lk~~L~d~--~pyVRk~A~l~~~kL~~-----~~pe----~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 143 YMKQAIVDK--VPSVSSSALVSSLHLLK-----CSFD----VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHHHHTCS--SHHHHHHHHHHHHHHTT-----TCHH----HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCC--CHHHHHHHHHHHHHHhc-----cCHH----HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 577777766 56778888888777763 2222 222 5777888888777878887777777777653
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.59 Score=44.29 Aligned_cols=160 Identities=12% Similarity=0.073 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHhhcccccc---c-----c----cCCCCChHHHHHHHHHHHHHhh----CChHHHHHHHhcCcHHHH
Q 016423 146 SLEDSQRALQELLILVEPIDNA---N-----G----QLNHPDTDIRKISAWILGKASQ----NNPLVQKQVLELGALSKL 209 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnA---n-----~----lL~s~~~~vR~~Aa~vLgta~Q----NNp~~Q~~~le~g~l~~L 209 (390)
+-.++..+++.|...+++.... + + -+.+++..|-..+..+|..++. .++...+.-. .-.+|.|
T Consensus 59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~L 137 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPYL 137 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHHH
Confidence 4456666666666655532111 0 1 1235688888888888877643 2222222111 1257999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCch
Q 016423 210 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289 (390)
Q Consensus 210 l~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~ 289 (390)
+.-+.+..+.+|.++-..+-.+..-+|+. .. ++.+...+.+. +.|.|.-.+..+.+++... + ..
T Consensus 138 veKlGd~k~~vR~~~r~il~~l~~v~~~~-~v------~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~---G-~~--- 201 (266)
T 2of3_A 138 LLKTGEAKDNMRTSVRDIVNVLSDVVGPL-KM------TPMLLDALKSK--NARQRSECLLVIEYYITNA---G-IS--- 201 (266)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHHHHCHH-HH------HHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH---C-SG---
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHCCHH-HH------HHHHHHHHccC--CHHHHHHHHHHHHHHHHhc---C-CC---
Confidence 99998888888887766665554334442 22 24567778776 5789999999999999643 1 11
Q ss_pred hhhhcCch---HHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 290 LFRDRFFL---KSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 290 ~l~~~g~v---~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
....+ +.+..++...|..+++.|++|+..+..+
T Consensus 202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 13467 9999999999999999999999987765
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.13 E-value=1.9 Score=39.33 Aligned_cols=187 Identities=16% Similarity=0.184 Sum_probs=121.2
Q ss_pred HHHHHHHHHHcCCCCh-HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhh
Q 016423 114 QMEIKELMEKLKTPSD-AQLIQIAIDDLNNSTLS-LEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQ 191 (390)
Q Consensus 114 ~~~L~eal~~~~~~~d-~~~Mk~~l~~l~~~~~s-~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~Q 191 (390)
+++|++.+..+ +|| ...-|.++.++..-.-+ ++-..-+++.|.-++. +|+.-.+-..-+..+|+++.
T Consensus 31 ~~~l~~lI~~L--DDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---------ksEaIpltqeIa~a~G~la~ 99 (253)
T 2db0_A 31 ESVLKKLIELL--DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---------KSEAIPLTQEIAKAFGQMAK 99 (253)
T ss_dssp HHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---------HCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---------hcccCchHHHHHHHHhHHHH
Confidence 34555555432 222 34555666555443222 2222333344332221 46666776778899999999
Q ss_pred CChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHH
Q 016423 192 NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 271 (390)
Q Consensus 192 NNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~L 271 (390)
-||..-.. .+|.|..-..-.++..+..--|||.-+.|.||....-+ +.-+...+.+++.. =|.-|+.+
T Consensus 100 i~Pe~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~--Dkl~aLnF 167 (253)
T 2db0_A 100 EKPELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNRE--DKLTALNF 167 (253)
T ss_dssp HCHHHHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHH--HHHHHHHH
T ss_pred hCHHHHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChH--HHHHHHHH
Confidence 99965443 57777777777778889999999999999999864433 23455667766322 34466677
Q ss_pred HHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHH
Q 016423 272 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVL 333 (390)
Q Consensus 272 Ls~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~ 333 (390)
|..|-. .....+ .-+++.|..+|...|.-++-.|..+|..|+..++.-|..+
T Consensus 168 i~alGe--------n~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 168 IEAMGE--------NSFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp HHTCCT--------TTHHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHhc--------cCcccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 766642 222222 3678999999999999999999999999999876544433
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.59 Score=47.94 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 209 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~L 209 (390)
.+.+.+..++|.++.....+.......+.. ....++..+..|++.|..-...=|..|+. +|..+
T Consensus 7 ie~LY~~~~~L~da~dk~~~~~~~y~~Il~-----------~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~ 70 (507)
T 3u0r_A 7 VEELYRNYGILADATEQVGQHKDAYQVILD-----------GVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQ 70 (507)
T ss_dssp HHHHHHHHHHHHHTGGGGGGGHHHHHHHHH-----------GGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHH
T ss_pred HHHHHHHhhHhhhccccccccHHHHHHHHH-----------hcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHH
Confidence 677778888887765332333333333322 12357899999999999999999999998 56678
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCCh-hHHHHHHHHHHHHHHhhhhhhcCCCCCc
Q 016423 210 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF-EIRLHRKAVSLVGDLAKCQLENMHKVEP 288 (390)
Q Consensus 210 l~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~-d~klr~KA~~LLs~L~~~~l~~~~~~~~ 288 (390)
+.|..+++..+|..|+-.|..+|++ ..... -..+|.++|+++.. ...+.. ..|..|+. .+
T Consensus 71 lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL~QlLqtdd~~E~~~V~---~sL~sllk-----~D---- 131 (507)
T 3u0r_A 71 LDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADILTQLLQTDDSAEFNLVN---NALLSIFK-----MD---- 131 (507)
T ss_dssp HHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHHHHHTTCCCHHHHHHHH---HHHHHHHH-----HC----
T ss_pred HHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHHHHHHhccchHHHHHHH---HHHHHHHh-----cC----
Confidence 9999999999999999999999998 32333 35689999997632 222222 23333332 11
Q ss_pred hhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 289 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 289 ~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
..+.+..+...+.+.+..+||+++..|..=+
T Consensus 132 ----pk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 132 ----AKGTLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp ----HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred ----hHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 1244444444444456778888877765433
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=94.37 E-value=0.98 Score=48.93 Aligned_cols=138 Identities=13% Similarity=0.069 Sum_probs=92.4
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhh---cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL---~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+.+-..+..|++++|.++..-+... ...++.++..+ .++++.+|..++|+|+.+.+...... .+. ..-+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence 45677889999999999987633211 23345555444 33456789999999999876533222 222 4567
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHhcC
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~~~ 326 (390)
+.|...|.+ ++++..|+.++.+++.. ....+.+.+ ..++..+..++... +.+.++.++.+++.++...
T Consensus 532 ~~l~~~l~~----~~V~~~A~~al~~l~~~----~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 532 PLVLHALGN----PELSVSSVSTLKKICRE----CKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHTTC----GGGHHHHHHHHHHHHHH----TGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCC----chHHHHHHHHHHHHHHH----HHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 888888864 46899999999999952 222222322 34566666667653 5688999999999998643
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.89 Score=41.76 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=97.2
Q ss_pred HHHHHhcCcHHHHHHhhcCC-----------CHHHHHHHHHHHHHHhhCCccchHHHHHc-CcHHHHHHHhcCCChhHHH
Q 016423 197 QKQVLELGALSKLMKMVKSS-----------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRL 264 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s~-----------~~~vr~kAL~ALSsLiR~~~~a~~~f~~~-gGl~~L~~lL~s~~~d~kl 264 (390)
=+.| ..+|+..|+.+|..- .......++.+|.+++ |++.+...+..+ +++..|...|.++ .+++
T Consensus 37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~ 112 (233)
T 2f31_A 37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNM 112 (233)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTT--SHHH
T ss_pred HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCC--CchH
Confidence 3445 467788888887521 1133456777777775 667888877765 4688888888765 6788
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCC-ch----h------hhhcCchHHHHHhhcC-CChhHHHHHHHHHHHHHhcChh----
Q 016423 265 HRKAVSLVGDLAKCQLENMHKVE-PP----L------FRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRTT---- 328 (390)
Q Consensus 265 r~KA~~LLs~L~~~~l~~~~~~~-~~----~------l~~~g~v~~Lv~lL~~-~d~~v~EkAL~aL~~L~~~~~~---- 328 (390)
+.-++-+|+.+|.- .+++- .+ . ..+..-...+++.|.. .+.+++-.++..+..|+...++
T Consensus 113 r~~~leLL~~lc~~----~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R 188 (233)
T 2f31_A 113 MIDAAKLLSALCIL----PQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR 188 (233)
T ss_dssp HHHHHHHHHHHHTC----SSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHhC----CCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 88999999988851 11111 11 1 1233445567777774 5789999999999999987652
Q ss_pred --HHHHHHhhCCcHHHHHHHHH
Q 016423 329 --EALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 329 --~r~~~~~~~gL~~~L~~Lr~ 348 (390)
-|.+|. .+|+.+.+++||.
T Consensus 189 ~~lR~ef~-~~Gl~~il~~l~~ 209 (233)
T 2f31_A 189 VHIRSELM-RLGLHQVLQELRE 209 (233)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHH
T ss_pred HHHHHHHH-HCChHHHHHHHhc
Confidence 345555 7999999998875
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.97 Score=42.72 Aligned_cols=195 Identities=15% Similarity=0.105 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc---------------------ccCCCCC----hHHHH-HHHH
Q 016423 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN---------------------GQLNHPD----TDIRK-ISAW 184 (390)
Q Consensus 131 ~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn---------------------~lL~s~~----~~vR~-~Aa~ 184 (390)
+.|.+.+..|.++ +.|+.||-+|..--|++++-. .+|+.+. ..-|. .|..
T Consensus 3 ~~i~qli~~L~~p----~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa 78 (268)
T 2fv2_A 3 EKIYQWINELSSP----ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA 78 (268)
T ss_dssp HHHHHHHHHTSST----TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence 3445555555555 468888888888777765422 3444322 22232 2333
Q ss_pred HHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhCCccchHHH-HHcCcHHHHHHHhcCC
Q 016423 185 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMF-YVEAGDLMLQDILGNS 258 (390)
Q Consensus 185 vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-----~~vr~kAL~ALSsLiR~~~~a~~~f-~~~gGl~~L~~lL~s~ 258 (390)
++-.+| .||+.+..|++.+..--|...|+..+ +-+|..+|.-|+++++...+-.-.| ...+-++...+++...
T Consensus 79 LlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G 157 (268)
T 2fv2_A 79 LLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG 157 (268)
T ss_dssp HHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence 344454 58999999999986666777776554 2479999999999999755554444 5666789999998865
Q ss_pred ChhHHHHHHHHHHHHHHhhhh--hhcCCCCCchhh-hhcCchHHHHH-hhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 259 SFEIRLHRKAVSLVGDLAKCQ--LENMHKVEPPLF-RDRFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 259 ~~d~klr~KA~~LLs~L~~~~--l~~~~~~~~~~l-~~~g~v~~Lv~-lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
+.--|.-|.|.+..++... +.... ...+.| .=..++..+|. +...++..+..++.+|-..|... +..|..++
T Consensus 158 --selSKtvAtfIlqKIL~dd~GL~YiC-~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~aL~ 233 (268)
T 2fv2_A 158 --SELSKTVATFILQKILLDDTGLAYIC-QTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREALR 233 (268)
T ss_dssp --CHHHHHHHHHHHHHHHHSHHHHHHHT-SSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHhccchhHHHHH-ccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 3446888999999998521 10000 111111 11233333443 34556888999999998888864 34555444
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=94.13 E-value=0.18 Score=44.26 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|-.......|...+.+..+.++.....+.+-..++-. -|++.++.++-.|..+|-++++| .+
T Consensus 19 ~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~k-------------rl~~~n~~vql~AL~LLd~~vkNcG~ 85 (163)
T 1x5b_A 19 DVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMK-------------RVNHKVPHVALQALTLLGACVANCGK 85 (163)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHH-------------HHTCSSHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 45555544444567788888888888765444444443322 35778999999999999999999 57
Q ss_pred HHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHh
Q 016423 195 LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLI 232 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLi 232 (390)
.++..+.....+..|+++++. .+..|+.|++..|-.-.
T Consensus 86 ~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 86 IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 788888888889999999975 34678888877665543
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.27 Score=42.47 Aligned_cols=107 Identities=11% Similarity=0.073 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|-.......|...+-+..+.++.....+.+-..++- +-|++.++.++-.|..+|-++++| .+
T Consensus 5 ~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~-------------krl~~~n~~vql~AL~LLe~~vkNCG~ 71 (148)
T 1mhq_A 5 WLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLA-------------HKIQSPQEKEALYALTVLEMCMNHCGE 71 (148)
T ss_dssp HHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHH-------------HHHTCSSHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHH-------------HHhcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 3444444433345677777777777765433333333221 235789999999999999999999 67
Q ss_pred HHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhCC
Q 016423 195 LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s------~~~~vr~kAL~ALSsLiR~~ 235 (390)
.++..+.....+..|+++++. .+..|+.|++..|-+-...+
T Consensus 72 ~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 72 KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 899999888999999999974 35688998887776654443
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.2 Score=44.39 Aligned_cols=107 Identities=15% Similarity=0.080 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|-.......|...+.+..+.++.......+-..+|- +-|++.++.++-.|..+|-++++| .+
T Consensus 17 ~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~-------------krl~~~n~~vql~AL~LLd~~vkNCG~ 83 (171)
T 1juq_A 17 WLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLA-------------HKIQSPQEWEALQALTVLEACMKNCGR 83 (171)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHH-------------HHHTCSSHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHH-------------HHhcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 3444444333445677777888888776544433333322 235788999999999999999999 46
Q ss_pred HHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhCC
Q 016423 195 LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s------~~~~vr~kAL~ALSsLiR~~ 235 (390)
.++..+.....+..|+++++. .+..|+.|++..|-+-...+
T Consensus 84 ~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 84 RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 788888888999999999963 24678999887777654443
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.23 Score=42.48 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=74.6
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-ChH
Q 016423 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NPL 195 (390)
Q Consensus 117 L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np~ 195 (390)
+.+|-.......|...+.+..+.++.....+.+-..++.. -|++.++.++..|..+|-++++| .+.
T Consensus 10 iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~K-------------rl~~~n~~~ql~AL~LLe~~vkNcG~~ 76 (140)
T 3ldz_A 10 VEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMR-------------RVNHKDPHVAMQALTLLGACVSNCGKI 76 (140)
T ss_dssp HHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHH-------------HHTCSSHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHH-------------HHcCCChHHHHHHHHHHHHHHHhcCHH
Confidence 3444444334567888888888888765444444443322 35778999999999999999999 477
Q ss_pred HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016423 196 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 232 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLi 232 (390)
.+..+.....+..|+++++..+..|+.|.+..|-+-.
T Consensus 77 f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 77 FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 7877777778888889887667789888877776653
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.31 Score=42.23 Aligned_cols=108 Identities=17% Similarity=0.090 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|-+......|...+.+..+.++.....+.+-..+|-. -|++.++.++-.|..+|-++++| .+
T Consensus 15 ~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~k-------------rl~~~n~~v~l~AL~LLe~cvkNCG~ 81 (149)
T 3g2s_A 15 RINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAH-------------KIQSPQEWEAIQALTVLETCMKSCGK 81 (149)
T ss_dssp HHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHH-------------HHTCSSHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHhcCH
Confidence 44555444334567888888888888766555544444322 24788999999999999999999 56
Q ss_pred HHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhCCc
Q 016423 195 LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s------~~~~vr~kAL~ALSsLiR~~~ 236 (390)
.++..+.....+..|+++++. .+..|+.|.+..|-+-...++
T Consensus 82 ~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 82 RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 778888888899999999974 356899998887777655443
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.46 Score=43.72 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|-+......|...+.+..+.++.......+-..+|.. -|++.++.++-.|..+|-++++| .+
T Consensus 12 ~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~k-------------rl~~~n~~v~l~aL~LLe~~vkNcG~ 78 (226)
T 3zyq_A 12 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKK-------------KVNDKNPHVALYALEVMESVVKNCGQ 78 (226)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHH-------------HHTCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHhcch
Confidence 44444444344567778888888887765555554444322 24789999999999999999999 66
Q ss_pred HHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhC
Q 016423 195 LVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRN 234 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~ 234 (390)
..+..+.....+..|.++++.. +..|+.|++..|-+....
T Consensus 79 ~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 79 TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 6888888888888888888653 467899988877766443
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=93.14 E-value=3 Score=40.91 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=87.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+=++++++-+|..|...+|.+.-.. -++ ...+.+-+.+.+.++-||.+|+.+..-+++.+|...+ +.+
T Consensus 111 kDl~~~N~~iR~lALRtL~~I~~~~-m~~------~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~ 178 (355)
T 3tjz_B 111 KDMTGKEDSYRGPAVRALCQITDST-MLQ------AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWV 178 (355)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCTT-THH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTH
T ss_pred hhcCCCcHhHHHHHHHHHhcCCCHH-HHH------HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHH
Confidence 4457889999999999999995543 122 2456677888888888999999999999888777543 466
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhh----------hhcC---CCC-Cchhh-------------hhcCchHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----------LENM---HKV-EPPLF-------------RDRFFLKSVV 301 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~----------l~~~---~~~-~~~~l-------------~~~g~v~~Lv 301 (390)
+-+.+++.+. ++-++..|+.+++.+...- +... ++- ....+ ....+++.+.
T Consensus 179 ~~l~~ll~d~--n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~ 256 (355)
T 3tjz_B 179 NEAQEAASSD--NIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIE 256 (355)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------
T ss_pred HHHHHHhcCC--CccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 7788888775 4557788888888776410 0000 000 00000 1234566666
Q ss_pred HhhcCCChhHHHHHHHHHHHHHh
Q 016423 302 DLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 302 ~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
.+|++.+..|.-.|.+++..|..
T Consensus 257 ~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 257 SCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp CCCCCSSHHHHHHHHHHHTC---
T ss_pred HHHcCCChHHHHHHHHHHHhccC
Confidence 77777777788777777777654
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=93.11 E-value=2.4 Score=42.04 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=95.3
Q ss_pred cCcHHHHHHhhcCC-----------CHHHHHHHHHHHHHHhhCCccchHHHHHc-CcHHHHHHHhcCCChhHHHHHHHHH
Q 016423 203 LGALSKLMKMVKSS-----------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVS 270 (390)
Q Consensus 203 ~g~l~~Ll~LL~s~-----------~~~vr~kAL~ALSsLiR~~~~a~~~f~~~-gGl~~L~~lL~s~~~d~klr~KA~~ 270 (390)
.+|+..|+.+|..- .......++.+|.+++ |++.+...+..+ +++..|..+|.++ .++++.-++-
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~--~~~~r~~vle 122 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAK 122 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHH
Confidence 56777777777411 1234557778887775 567777777665 4688888888765 6788888988
Q ss_pred HHHHHhhhhhhcCCCCC-ch----------hhhhcCchHHHHHhhc-CCChhHHHHHHHHHHHHHhcChh------HHHH
Q 016423 271 LVGDLAKCQLENMHKVE-PP----------LFRDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTT------EALV 332 (390)
Q Consensus 271 LLs~L~~~~l~~~~~~~-~~----------~l~~~g~v~~Lv~lL~-~~d~~v~EkAL~aL~~L~~~~~~------~r~~ 332 (390)
+|..+|.. ..+.- .+ ...+..-...+++.|. +.+.+++..++..+..|+...++ -|.+
T Consensus 123 LL~alc~~----~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~E 198 (386)
T 2bnx_A 123 LLSALCIL----PQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSE 198 (386)
T ss_dssp HHHHHHTC----CSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHcC----CCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 99988851 11111 11 1223445566778786 45789999999999999987653 4555
Q ss_pred HHhhCCcHHHHHHHHH
Q 016423 333 LKDFCGLDTALERLRQ 348 (390)
Q Consensus 333 ~~~~~gL~~~L~~Lr~ 348 (390)
|. .+|+.+.++.||.
T Consensus 199 f~-~~GL~~il~~Lr~ 213 (386)
T 2bnx_A 199 LM-RLGLHQVLQELRE 213 (386)
T ss_dssp HH-HTTHHHHHHHHTT
T ss_pred HH-HCChHHHHHHHhc
Confidence 65 7999999998876
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.091 Score=53.87 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=57.5
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCC
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~ 235 (390)
.++.+.+-||.=||..+...|..+..+-+.|+=..++.|+.+++++||..||.|+.-++.++
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 46778999999999999999999999999999999999999999999999999999988764
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=92.86 E-value=0.33 Score=54.24 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=88.3
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC---CHH--HHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVE--EAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~---~~~--vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+=..+++++|++|.++..-..-+..-+=..++|.|+.+.... ++. ++..++|.||...+...... .|. ..-+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-~~L-~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFL-RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-HHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccH-HHH-HHHH
Confidence 5667999999999999876332222222234788888888631 122 44467799998766432111 121 2334
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhh---hhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ---LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~---l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..|...+.++ .++++..||+.+.+|+..- +...++.....+. ..++..+...+..-+..-+..+..+++.+++.
T Consensus 543 ~~L~~~l~~~--~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~-~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI-QTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH-HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4566666554 5679999999999999731 1000111001111 12334444444545677778999999999986
Q ss_pred Ch
Q 016423 326 RT 327 (390)
Q Consensus 326 ~~ 327 (390)
.+
T Consensus 620 ~~ 621 (1023)
T 4hat_C 620 ER 621 (1023)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=92.05 E-value=1.5 Score=48.56 Aligned_cols=109 Identities=12% Similarity=0.006 Sum_probs=78.8
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc---ccCCCC---ChHHHHHHHHHHHHHhhCChHH---
Q 016423 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN---GQLNHP---DTDIRKISAWILGKASQNNPLV--- 196 (390)
Q Consensus 126 ~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn---~lL~s~---~~~vR~~Aa~vLgta~QNNp~~--- 196 (390)
+|-+++.+.+|++..-++.++.+.|..|.+-|+.+=++-|--. .+|.++ ++.+|.-|+.+|-+.++.-|..
T Consensus 1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~ 80 (980)
T 3ibv_A 1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNL 80 (980)
T ss_dssp --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSH
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhH
Confidence 3557788888998888888899999999888887776644323 566543 6899999999999998854444
Q ss_pred -HHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhC
Q 016423 197 -QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRN 234 (390)
Q Consensus 197 -Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~ 234 (390)
+...++...++.+...-. .++..++.|...+++.++..
T Consensus 81 ~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 81 LELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 566666666666665211 23456899999999998765
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=92.01 E-value=0.77 Score=50.22 Aligned_cols=145 Identities=11% Similarity=0.066 Sum_probs=86.7
Q ss_pred CCCC---ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc-------c-ch
Q 016423 171 LNHP---DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-------A-GQ 239 (390)
Q Consensus 171 L~s~---~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~-------~-a~ 239 (390)
|.++ ++-||.+|||+||..+..- +...+ ...++.++..+.+++..|+..|.+||..++.+.. . ..
T Consensus 464 l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~ 539 (960)
T 1wa5_C 464 LTSNNIPHIILRVDAIKYIYTFRNQL---TKAQL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHK 539 (960)
T ss_dssp HHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCG
T ss_pred hcCCCCCCceehHHHHHHHHHHHhhC---CHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccH
Confidence 4555 8899999999999997652 11222 2368889988887778899999999999998522 1 11
Q ss_pred HHHH--HcCcHHHHHHHhcCCC-hhHH--HHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc----C-CCh
Q 016423 240 EMFY--VEAGDLMLQDILGNSS-FEIR--LHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA----S-ADL 309 (390)
Q Consensus 240 ~~f~--~~gGl~~L~~lL~s~~-~d~k--lr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~----~-~d~ 309 (390)
..+. -..-++.|..++.... ...+ ....+...|..++.. ..++..+.+. .+++.++..+. + ++.
T Consensus 540 ~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~----~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~ 613 (960)
T 1wa5_C 540 EDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQT----SEDSIQPLFP--QLLAQFIEIVTIMAKNPSNP 613 (960)
T ss_dssp GGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHH----HTTTTGGGHH--HHHHHHHHHHHHHTTSCCCH
T ss_pred HHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHH----HHHhhhhHHH--HHHHHHHHHHHHHHhCCCCc
Confidence 2221 1223445555555420 0011 123455666666542 1334444322 34455554442 2 366
Q ss_pred hHHHHHHHHHHHHHhc
Q 016423 310 DLQEKALAAIKNLLQL 325 (390)
Q Consensus 310 ~v~EkAL~aL~~L~~~ 325 (390)
.+...++.+|+.++..
T Consensus 614 ~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 614 RFTHYTFESIGAILNY 629 (960)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7778889999888875
|
| >1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=91.34 E-value=0.75 Score=39.94 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCC-CCChHHHHHHHHHHHHHhhCC-
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLN-HPDTDIRKISAWILGKASQNN- 193 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~-s~~~~vR~~Aa~vLgta~QNN- 193 (390)
++.+|-.......|...+.+..+.++.....+.+-..++-. -|+ +.++.++-.|..+|-++++|.
T Consensus 20 ~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~k-------------rl~~~~n~~v~l~AL~LLd~~vkNcG 86 (157)
T 1elk_A 20 RIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKK-------------RIVGNKNFHEVMLALTVLETCVKNCG 86 (157)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHH-------------HHTTCCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHH-------------HhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 34444443333456777777777777654444333333221 244 578999999999999999995
Q ss_pred hHHHHHHHhcCcHHH-HHHhhcC---CCHHHHHHHHHHHHHH
Q 016423 194 PLVQKQVLELGALSK-LMKMVKS---SFVEEAVKALYTVSSL 231 (390)
Q Consensus 194 p~~Q~~~le~g~l~~-Ll~LL~s---~~~~vr~kAL~ALSsL 231 (390)
+..+..+.....+.. |++++.. .+..|+.|++..|-+-
T Consensus 87 ~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 87 HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 889988988889998 8898853 2357888887766654
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.68 E-value=2.3 Score=38.72 Aligned_cols=131 Identities=16% Similarity=0.188 Sum_probs=98.3
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
.-.++.+|..-..+|+.++.+||..--. +..-+..|+.+.+..-+..|+.=|+++--|++.- ..--++-|
T Consensus 117 rigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGen~~~y-----v~PfLprL 186 (253)
T 2db0_A 117 RIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGENSFKY-----VNPFLPRI 186 (253)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHH-----HGGGHHHH
T ss_pred hcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhccCccc-----cCcchHHH
Confidence 4458999999999999999999976544 4556888999877777889999999886554432 24457889
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..+|.++ +.-+|.-|+-.|.+|+. -++.+++. +...++-+......++.++-.+|.-|+-.
T Consensus 187 ~aLL~D~--deiVRaSaVEtL~~lA~-----~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 187 INLLHDG--DEIVRASAVEALVHLAT-----LNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HGGGGCS--SHHHHHHHHHHHHHHHT-----SCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCc--chhhhHHHHHHHHHHHH-----cCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 9999987 56689999999999995 34444433 33345556666778888888888877653
|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 | Back alignment and structure |
|---|
Probab=90.61 E-value=0.95 Score=41.25 Aligned_cols=104 Identities=16% Similarity=0.236 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC-h
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN-P 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN-p 194 (390)
++.+|-.......|...+.+..+.++.....+.+-..+|.. -|++.++.++-.|..+|-++++|. +
T Consensus 9 ~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~k-------------rl~~~n~~~~l~aL~Lle~~vkNcG~ 75 (220)
T 1dvp_A 9 NLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKK-------------KMNSPNPHSSCYSLLVLESIVKNCGA 75 (220)
T ss_dssp HHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHH-------------HHTCSSHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHhccCH
Confidence 34444444333456777777777777665555544444322 247889999999999999999995 6
Q ss_pred HHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHh
Q 016423 195 LVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLI 232 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLi 232 (390)
..+..+.....+..|++++.+. +..|+.|++.-|-.-.
T Consensus 76 ~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 76 PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 6888888888889999988754 4678888876665544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.44 E-value=7.1 Score=43.25 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=78.2
Q ss_pred CCChHHHHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 173 HPDTDIRKISAWILGKASQN--NPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QN--Np~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+.++-+|..|+.++|.+.-. |+. +++.|+..+.++ +..+|..|+.||+-+.-+.+.. ++
T Consensus 553 ~~dp~vRygaa~alglAyaGTGn~~---------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~---------v~ 614 (963)
T 4ady_A 553 SDESLLRYGGAFTIALAYAGTGNNS---------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT---------VP 614 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSCCHH---------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS---------HH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH---------HH
Confidence 45666666666666544332 221 355566655433 4678888888888775555432 22
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
-++..|... .++-+|+-|++++.-++. +++ ...++..|..+++..|..|+..|+.+|+.+....
T Consensus 615 rlv~~L~~~-~d~~VR~gAalALGli~a-----Gn~-------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 615 RIVQLLSKS-HNAHVRCGTAFALGIACA-----GKG-------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp HHTTTGGGC-SCHHHHHHHHHHHHHHTS-----SSC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhcc-----CCC-------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 333444332 267789999999988763 222 1345667777778789999999999999888643
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=89.94 E-value=0.31 Score=49.92 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=61.1
Q ss_pred CcHHHHHHhhcCC----------CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHH
Q 016423 204 GALSKLMKMVKSS----------FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 273 (390)
Q Consensus 204 g~l~~Ll~LL~s~----------~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs 273 (390)
..+..|+++|+++ ++.+..=|++=|+.++|++|.+.....+.||=..++.++.++ |..+|..|+.++.
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~--d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS--DSRVKYEALKATQ 472 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC--CHHHHHHHHHHHH
Confidence 3578899999742 234566788999999999999999999999999999999987 6779999999998
Q ss_pred HHhh
Q 016423 274 DLAK 277 (390)
Q Consensus 274 ~L~~ 277 (390)
-++.
T Consensus 473 klm~ 476 (480)
T 1ho8_A 473 AIIG 476 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=89.85 E-value=2.2 Score=46.64 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc------CCCHHHHHHHHHHHHHHhhCC---c-c--------
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK------SSFVEEAVKALYTVSSLIRNN---L-A-------- 237 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~------s~~~~vr~kAL~ALSsLiR~~---~-~-------- 237 (390)
..+|..|..+|..++...+ +.++.. .++.+...+. +.+-..|..|++|++++..+. . +
T Consensus 375 ~s~R~aa~~~L~~l~~~~~---~~v~~~-~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNE---VLVTNI-FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCH---HHHHHH-HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred cCcHHHHHHHHHHHHHHcc---hhHHHH-HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 4689999999999998875 222211 2344444444 223346788999999997542 1 1
Q ss_pred chHHHHHcCcHHHHHHHhcCCC-hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHH
Q 016423 238 GQEMFYVEAGDLMLQDILGNSS-FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL 316 (390)
Q Consensus 238 a~~~f~~~gGl~~L~~lL~s~~-~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL 316 (390)
....|.. ..+...|.++. ..+.+|..|+|+++.++.. - .+.. -..+++.++..|.+++..++..|.
T Consensus 451 ~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~----~----~~~~-l~~~l~~l~~~L~d~~~~V~~~A~ 517 (960)
T 1wa5_C 451 NVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ----L----TKAQ-LIELMPILATFLQTDEYVVYTYAA 517 (960)
T ss_dssp CHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG----S----CHHH-HHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred cHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHHHHHhh----C----CHHH-HHHHHHHHHHHhCCCChhHHHHHH
Confidence 1222221 12333344431 2678999999999999841 1 1121 345677888888888899999999
Q ss_pred HHHHHHHhc
Q 016423 317 AAIKNLLQL 325 (390)
Q Consensus 317 ~aL~~L~~~ 325 (390)
.||.++...
T Consensus 518 ~Al~~~~~~ 526 (960)
T 1wa5_C 518 ITIEKILTI 526 (960)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 999999874
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=89.73 E-value=1.8 Score=47.06 Aligned_cols=123 Identities=10% Similarity=0.101 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHhhccccccc-----------ccCC--CCChHHHHHHHHHHHHHhhC---ChHHHHHHHhcCcHHHH
Q 016423 146 SLEDSQRALQELLILVEPIDNAN-----------GQLN--HPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKL 209 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnAn-----------~lL~--s~~~~vR~~Aa~vLgta~QN---Np~~Q~~~le~g~l~~L 209 (390)
.-.+++.++--|.-+.+.++... ..|. .+++.||..|+|+||..+.- +| + ++. .+++.|
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~---~-~l~-~vl~~l 551 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP---A-YIP-PAINLL 551 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CHH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH---H-HHH-HHHHHH
Confidence 44577777777777766654321 1223 24889999999999988642 22 1 111 356777
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 210 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 210 l~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+..++ +.|+..|.+|+..+++.......-+. ..-+..|..++..+..+.+.+..+...+..++.
T Consensus 552 ~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 552 VRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 77773 46899999999999987654433222 234556667777643356677788888888874
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=89.54 E-value=1.9 Score=46.86 Aligned_cols=134 Identities=12% Similarity=0.047 Sum_probs=83.0
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhh---c--CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---K--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL---~--s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
++-..+..|..++|.++..-+... ...++.++.++ . +..+.+|..++|+|+.+........+.+ ..-+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 455689999999999987644322 13345444443 3 2256789999999998876433211111 1234
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHhc
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~~ 325 (390)
+.|...|. ++++..|+.++.+|+.. ......+.+ ..++..+..++..+ +.+.++.++.++..++..
T Consensus 549 ~~l~~~l~-----~~v~~~A~~al~~l~~~----~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 549 NLLVRGLN-----SSMSAQATLGLKELCRD----CQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHH-----SSCHHHHHHHHHHHHHH----CHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-----hHHHHHHHHHHHHHHHH----HHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 55666662 34799999999999952 111111111 35666666777763 678999999999999874
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=88.48 E-value=2.8 Score=46.24 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=83.1
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC----CHH-HHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----FVE-EAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~----~~~-vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+-..+..|++++|.++.........-+-..+++.|+.+.... +.. ++..++|+++...+...... .+. ..-+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l-~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFL-RTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHH-HHHH
Confidence 5667899999999999765433322111122455555543321 122 34468888887655422221 222 2345
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhh---hhcCCC-CCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ---LENMHK-VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~---l~~~~~-~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+.|...+.++ +.+++..|+.++..|+... +....+ +..+.+ ..++..+..++...+.+-......+++.++.
T Consensus 543 ~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 543 LKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6667777765 6789999999999999631 000000 001111 2344445555555555666777888888876
Q ss_pred cC
Q 016423 325 LR 326 (390)
Q Consensus 325 ~~ 326 (390)
..
T Consensus 619 ~~ 620 (1049)
T 3m1i_C 619 EE 620 (1049)
T ss_dssp TC
T ss_pred cC
Confidence 54
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=15 Score=35.95 Aligned_cols=147 Identities=15% Similarity=0.124 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC---cHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLML 251 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g---Gl~~L 251 (390)
++++--.+-.+|-.|+.. +.+-..++..+.+-.+.+.+..++=++..-|...+-.++..|+.....|...+ -+...
T Consensus 136 ~~diAl~~G~mLRecir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y 214 (341)
T 1upk_A 136 SPEIALNCGIMLRECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY 214 (341)
T ss_dssp STTTHHHHHHHHHHHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred cchhHhHHHHHHHHHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHH
Confidence 344444555566666554 45666677888888999999887778888899899988888888777887766 34566
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC-chhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
..+|.++ +-=.|+.++-||+.|+.. ..+... ...+.+..-++.++.+|++....+|-.|-+...-++..+.
T Consensus 215 ~~Ll~S~--NYVTkRQSlKLLgelLld---r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 215 EKLLHSE--NYVTKRQSLKLLGELLLD---RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHTTCS--SHHHHHHHHHHHHHHHHS---GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhcCC--cchhHHHHHHHHHHHHhC---chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 6778887 455899999999999952 223222 3345567889999999999999999999999999998643
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=87.64 E-value=7.4 Score=43.45 Aligned_cols=132 Identities=15% Similarity=0.124 Sum_probs=70.0
Q ss_pred ccCCCCHHHHH----------HhHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc----ccc
Q 016423 101 DVQRLSPSELK----------KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP----IDN 166 (390)
Q Consensus 101 ~~~~~s~e~l~----------~r~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~----IDn 166 (390)
-.+.++.++|. +-|.|+-+|+-..|.+.-...|++. +.+...+..+-..+|--+..++.+ ++.
T Consensus 319 ~lR~~~~e~L~~l~~~~~~~~~~r~~~lDal~~aGT~~a~~~i~~~---i~~~~l~~~ea~~~l~~~~~~~~Pt~e~l~~ 395 (1056)
T 1lsh_A 319 FLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRT---LASEQLTSAEATQIVASTLSNQQATRESLSY 395 (1056)
T ss_dssp HHTTSCHHHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhccHHHHHHHHHHhHhcCCHHHHHHHHHH---HHcCCCCHHHHHHHHHHhhccCCCCHHHHHH
Confidence 34566766532 1346888888877765444555554 566677766644444333332222 111
Q ss_pred ccccCCC----CChHHHHHHHHHHHHHhh----CChHHHHHHHhcCcHHHHHH----hhcCCCHHHHHHHHHHHHHHhhC
Q 016423 167 ANGQLNH----PDTDIRKISAWILGKASQ----NNPLVQKQVLELGALSKLMK----MVKSSFVEEAVKALYTVSSLIRN 234 (390)
Q Consensus 167 An~lL~s----~~~~vR~~Aa~vLgta~Q----NNp~~Q~~~le~g~l~~Ll~----LL~s~~~~vr~kAL~ALSsLiR~ 234 (390)
.-.++.+ .++.+|..|.-++|+++. +++.|.. ..++++.. .+...+...+.-+|-||+|+ +
T Consensus 396 ~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~--g 468 (1056)
T 1lsh_A 396 ARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA--G 468 (1056)
T ss_dssp HHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--T
T ss_pred HHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc--C
Confidence 1144444 466788877777777754 3332211 12333333 33444455567778888887 3
Q ss_pred CccchHHH
Q 016423 235 NLAGQEMF 242 (390)
Q Consensus 235 ~~~a~~~f 242 (390)
+|.....+
T Consensus 469 ~p~~l~~l 476 (1056)
T 1lsh_A 469 QPNSIKKI 476 (1056)
T ss_dssp CGGGHHHH
T ss_pred ChhHHHHH
Confidence 45444433
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=87.05 E-value=0.18 Score=47.10 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHH
Q 016423 145 LSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKA 224 (390)
Q Consensus 145 ~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kA 224 (390)
.+.+.+..+...+ ..+--..+++++++.||..|+..++ .+.|..++++++..||..+
T Consensus 62 ~~~~VR~~AA~~l-----~~~~l~~L~~D~~~~VR~~aA~~L~------------------~~~L~~ll~D~d~~VR~~a 118 (244)
T 1lrv_A 62 PFWERRAIAVRYS-----PVEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDEDREVRITV 118 (244)
T ss_dssp SSHHHHHHHHTTS-----CGGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHH
T ss_pred CCHHHHHHHHHhC-----CHHHHHHHccCcCHHHHHHHHHHCC------------------HHHHHHHHcCCCHHHHHHH
Confidence 3566666665543 1111126778899999998886431 1345555555555666555
Q ss_pred HHH
Q 016423 225 LYT 227 (390)
Q Consensus 225 L~A 227 (390)
...
T Consensus 119 A~~ 121 (244)
T 1lrv_A 119 ADR 121 (244)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.62 E-value=18 Score=33.05 Aligned_cols=142 Identities=13% Similarity=0.028 Sum_probs=91.8
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHH--HHH-hcC-cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc--hH-HH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQK--QVL-ELG-ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG--QE-MF 242 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~--~~l-e~g-~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a--~~-~f 242 (390)
-|.|.+=..|..|..-|..+.++++.... ..+ ..+ ..+.+-+.+.+.+..+..+++.+|..++...... .. .+
T Consensus 17 ~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 17 RLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred hcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 46788889999999999999988765432 222 233 3445556777777889999999999999875432 11 12
Q ss_pred H--HcCcHHHHHH-HhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHH
Q 016423 243 Y--VEAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI 319 (390)
Q Consensus 243 ~--~~gGl~~L~~-lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL 319 (390)
. ...-++.|+. +|.+. ..+++.++..++..++.. .... ..+++.+...+.+.++.++..++..|
T Consensus 97 ~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l~~~~~~------~~~~-----~~~~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSS--RATTKTQSMSCILSLCGL------DTSI-----TQSVELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHT------SSSS-----HHHHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHh------cCcH-----HHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 1 1223454553 46665 466788888888877731 1111 12346667778888999999999888
Q ss_pred HHHHh
Q 016423 320 KNLLQ 324 (390)
Q Consensus 320 ~~L~~ 324 (390)
..++.
T Consensus 164 ~~~l~ 168 (278)
T 4ffb_C 164 YELMA 168 (278)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88775
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=86.17 E-value=12 Score=35.18 Aligned_cols=141 Identities=14% Similarity=0.029 Sum_probs=91.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhC---CccchHHHHHc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN---NLAGQEMFYVE 245 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~---~~~a~~~f~~~ 245 (390)
..|.+.+-.-+..|+..|......+|..-...++. .++-+.--+.+.+..+..+++-.|..++.. ..+........
T Consensus 53 ~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 53 SQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 35666788889999999999988887543332221 122111123355777888888888887421 11111111112
Q ss_pred CcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 246 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
--++.|+.=+.++ ..++|.++-.++..|..- .--..+.+.+++-+.+.+...++.++..+.++..
T Consensus 132 ~~lP~LveKlGd~--k~~vR~~~r~il~~l~~v------------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 132 AFVPYLLLKTGEA--KDNMRTSVRDIVNVLSDV------------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp HHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHH------------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHH------------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 2468888888876 456788888777766631 1124577778888899999999999999999885
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.13 E-value=6.2 Score=43.71 Aligned_cols=88 Identities=9% Similarity=0.103 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 250 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~ 250 (390)
++.++.||..|+-.||-+...+| ..++.++.+|. +.++.+|..|.+|++-++-+++. ... +..
T Consensus 588 ~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~a------id~ 651 (963)
T 4ady_A 588 SDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QSA------IDV 651 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HHH------HHH
T ss_pred cCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HHH------HHH
Confidence 45678899999999999877765 35778887664 45678999999999999877664 222 347
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
|..++.++ +..+|..|++.|.-+..
T Consensus 652 L~~L~~D~--d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 652 LDPLTKDP--VDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHHTCS--SHHHHHHHHHHHHHHST
T ss_pred HHHHccCC--CHHHHHHHHHHHHHHhc
Confidence 77777765 66789999999998875
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=84.91 E-value=22 Score=34.96 Aligned_cols=131 Identities=16% Similarity=0.057 Sum_probs=91.6
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc-cc-hHHHH------
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFY------ 243 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~-~a-~~~f~------ 243 (390)
..+..+......||.++ -||..--+.++.+ .++..|...+.+....++.-|+--|+.+|--.. .+ ...+.
T Consensus 131 ~~d~~~q~~~l~CLkal-mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~ 209 (383)
T 3eg5_B 131 NYDSRNQHEIIRCLKAF-MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER 209 (383)
T ss_dssp --CHHHHHHHHHHHHHH-TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH-hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHH
Confidence 34567888899999988 5666666667776 689999999998888888888888888876543 22 22221
Q ss_pred ----HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCC------CchhhhhcCchHHHHHhhcCCChh
Q 016423 244 ----VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV------EPPLFRDRFFLKSVVDLTASADLD 310 (390)
Q Consensus 244 ----~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~------~~~~l~~~g~v~~Lv~lL~~~d~~ 310 (390)
+..-+..++..|.+. .+..++..+..+|..++. ..++ .+..+...|+.+.+-.+=...+.+
T Consensus 210 ~~~~e~~RF~~lv~~L~~~-~~~e~~~~~m~lIN~li~-----~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~ 280 (383)
T 3eg5_B 210 AEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALIT-----PAEELDFRVHIRSELMRLGLHQVLQELREIENED 280 (383)
T ss_dssp HHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHH
T ss_pred HHhCCCCcHHHHHHHHHcc-CcHHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChh
Confidence 123478888888864 367889999999999985 3332 345567888888777643333433
|
| >3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.65 E-value=2.8 Score=36.23 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCC-CCChHHHHHHHHHHHHHhhC-C
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLN-HPDTDIRKISAWILGKASQN-N 193 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~-s~~~~vR~~Aa~vLgta~QN-N 193 (390)
++.+|-+......|...+.+..+.++.....+.+-..++.. -|. ++++.+.-.|..+|-++++| .
T Consensus 20 ~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~K-------------Rl~~~~n~~~~l~AL~LLe~cvkNCG 86 (152)
T 3rru_A 20 LIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKK-------------RISKNYNHKEIQLTLSLIDMCVQNCG 86 (152)
T ss_dssp HHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHH-------------HHTTCCBHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHH-------------HHcCCCChHHHHHHHHHHHHHHHhcC
Confidence 44555444334467788888888888765545444444332 123 46788888899999999999 6
Q ss_pred hHHHHHHHhcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhhCCcc
Q 016423 194 PLVQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRNNLA 237 (390)
Q Consensus 194 p~~Q~~~le~g~l~~-Ll~LL~s~---~~~vr~kAL~ALSsLiR~~~~ 237 (390)
+.++..+.....+.. |+++++.. +..|+.|++..|-+-...|+.
T Consensus 87 ~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 87 PSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp HHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 667887777777764 77887643 357999999988888766643
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=84.47 E-value=6.3 Score=42.53 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHhhcccccc--c---------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhh
Q 016423 145 LSLEDSQRALQELLILVEPIDNA--N---------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 213 (390)
Q Consensus 145 ~s~e~~~~aLd~Le~lve~IDnA--n---------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL 213 (390)
.+-..++.++--+.-+.+.++.. . ..|.++++.||..++|+||..+.--.... .++. .+++.|+..+
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~-~vl~~l~~~l 538 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMIN-SVLPLVLHAL 538 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT-TTHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH-HHHHHHHHHh
Confidence 45667777777777666655421 1 12344688899999999998864311111 2332 6899999988
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 016423 214 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 214 ~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
.+ +.|+..|.+|+..+++..+....-+. ..-+..|..++..+..+.+.+..+.-.+..++
T Consensus 539 ~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 539 GN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp TC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 65 57899999999999987654322111 12233444444432223345555555555555
|
| >3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.10 E-value=4.6 Score=39.02 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=63.8
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC--cH----HHHHHHhcCC--ChhHHHHHHHHHHHHHHhhhhhhcCCC
Q 016423 214 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA--GD----LMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHK 285 (390)
Q Consensus 214 ~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g--Gl----~~L~~lL~s~--~~d~klr~KA~~LLs~L~~~~l~~~~~ 285 (390)
.+.+.+++.+|...|++.+||||++.+.+...- -+ +-|...+..+ ..+ .++.+-+.+|.-|+. ...
T Consensus 80 ~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~-~l~KR~LsII~~L~~-----~~~ 153 (315)
T 3qml_C 80 ENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSN-ILIKRYLSILNELPV-----TSE 153 (315)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCH-HHHHHHHHHHHHSCC-----CST
T ss_pred ccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHHHHhc-----ChH
Confidence 334567899999999999999999988665432 11 2233333221 123 466677788888874 122
Q ss_pred CCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHH
Q 016423 286 VEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLL 323 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~ 323 (390)
++ . ..-+..|..++... +.+++.+++..+.-+.
T Consensus 154 ~F----~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 154 DL----P-IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred hh----h-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 22 1 22336666666666 9999999999888776
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=83.83 E-value=2.4 Score=35.91 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHH
Q 016423 223 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 302 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 302 (390)
..+-.|+-+|+..+.+... .+..|..-|.+. ++.++..|+.+|-.++. +.++.+...+.+..++..++.
T Consensus 24 ~~ileicD~I~~~~~~~k~-----a~rai~Krl~~~--n~~~ql~AL~LLe~~vk----NcG~~f~~evas~~Fl~el~~ 92 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPKD-----CLRSIMRRVNHK--DPHVAMQALTLLGACVS----NCGKIFHLEVCSRDFASEVSN 92 (140)
T ss_dssp HHHHHHHHHHTTSTTHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSCHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHH-----HHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----hcCHHHHHHHhhHHHHHHHHH
Confidence 4566788888887654333 345677777776 56789999999988886 445555666667788888888
Q ss_pred hhcCCChhHHHHHHHHHHHHHh
Q 016423 303 LTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 303 lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+++..+..|+++++..+.+...
T Consensus 93 l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 93 VLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHH
Confidence 8877899999999988877664
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=83.79 E-value=10 Score=38.92 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhh
Q 016423 114 QMEIKELMEKLKTPSDAQLIQIAIDDLN-N-STLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQ 191 (390)
Q Consensus 114 ~~~L~eal~~~~~~~d~~~Mk~~l~~l~-~-~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~Q 191 (390)
.+..++.|+..++. ..+|+....+- . -..=++-...|++.+.+|||+ ++..||.+|..-|..+|.
T Consensus 28 ~~~y~~Il~~~kg~---~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcED----------ed~~IR~qaik~Lp~~ck 94 (507)
T 3u0r_A 28 KDAYQVILDGVKGG---TKEKRLAAQFIPKFFKHFPELADSAINAQLDLCED----------EDVSIRRQAIKELPQFAT 94 (507)
T ss_dssp HHHHHHHHHGGGSC---HHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTC----------SSHHHHHHHHHHGGGGCC
T ss_pred HHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc----------ccHHHHHHHHHhhHHHhh
Confidence 44566677655452 33444333321 1 011245566788999999987 568899999999999988
Q ss_pred CChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHH
Q 016423 192 NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 271 (390)
Q Consensus 192 NNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~L 271 (390)
+ . .+- .+...|.+||.++........-.+|-++++.+|.+.-. .++.++..+ +..+|.|++.+
T Consensus 95 ~-~----~i~--kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~-------~lf~~i~~~---~e~~Rer~lkF 157 (507)
T 3u0r_A 95 G-E----NLP--RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLG-------GLFSQILQG---EDIVRERAIKF 157 (507)
T ss_dssp T-T----CHH--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHH-------HHHHHHHHS---CHHHHHHHHHH
T ss_pred h-h----hhh--hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHH-------HHHHHHccc---chHHHHHHHHH
Confidence 7 1 122 25778999999988777777778888888877664211 123344444 34588888888
Q ss_pred HHHHhhhhhhcCCCCCchhhhhcCchHHHHHhh
Q 016423 272 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 304 (390)
Q Consensus 272 Ls~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 304 (390)
|..=+.. -.++....=.+.-++..+-.+|
T Consensus 158 i~~kl~~----l~~~~l~~E~E~~i~~~ikK~L 186 (507)
T 3u0r_A 158 LSTKLKT----LPDEVLTKEVEELILTESKKVL 186 (507)
T ss_dssp HHHHGGG----SCTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhh----cchhhccHHHHHHHHHHHHHHh
Confidence 8765532 2223333333444555555555
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=83.26 E-value=14 Score=33.59 Aligned_cols=101 Identities=19% Similarity=0.105 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc-cc-hHHHH--------
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFY-------- 243 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~-~a-~~~f~-------- 243 (390)
+..+......||.++ -||..--+.++.. +++..|...|.+....++.-++--|+.+|--.. .+ ...+.
T Consensus 67 ~~~~~~~~l~CLkal-mn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAF-MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHH-TSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-hCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 456788899999888 5666666666665 688999999988888888888777777776543 24 33222
Q ss_pred --HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 244 --VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 244 --~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+..=+..+++.|.+. .+..++..+..+|..|+.
T Consensus 146 ~~e~~RF~~lv~~l~~~-~~~e~~~~~m~lIN~li~ 180 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSG-TSIALKVGCLQLINALIT 180 (233)
T ss_dssp HHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHHHT
T ss_pred hCCcchHHHHHHHHhcC-ChHHHHHHHHHHHHHHHC
Confidence 112356677777644 366778888888888874
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=81.66 E-value=23 Score=34.79 Aligned_cols=131 Identities=16% Similarity=0.073 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc-cc-hHHHH--------
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFY-------- 243 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~-~a-~~~f~-------- 243 (390)
+..+...+..||.++ -||..--+.++.+ +++..|...|.+....++..++--|+.+|-... .+ ...+.
T Consensus 71 d~~~~~~~l~CLkal-mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAF-MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHH-TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 456788899999888 5555555566666 789999999988888888878777777765443 23 22221
Q ss_pred --HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCC------CchhhhhcCchHHHHHhhcCCChhHH
Q 016423 244 --VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV------EPPLFRDRFFLKSVVDLTASADLDLQ 312 (390)
Q Consensus 244 --~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~------~~~~l~~~g~v~~Lv~lL~~~d~~v~ 312 (390)
+..=+..|+..|.+. .+..++..+..+|..|+. ..++ .+..|...|+.+.+-.+=...+.++.
T Consensus 150 ~~e~~RF~~lv~~l~~~-~~~e~~~a~m~lIN~lv~-----~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSG-TSIALKVGCLQLINALIT-----PAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 220 (386)
T ss_dssp HHTSCTTHHHHHHTSTT-SCHHHHHHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred hCchhhHHHHHHHHHcC-ChHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence 222466788888754 367799999999999995 3332 35567888988888766554454443
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=81.48 E-value=20 Score=40.23 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCCh-HHHHHHHhcCcHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQR-ALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALS 207 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~-aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp-~~Q~~~le~g~l~ 207 (390)
.+.||+++..+.+-. .++.+. .++.|... ++. ...+-..+.++||++|+++..-. ..-+.++ -.+++
T Consensus 456 y~~mrd~L~~lt~l~--~~~~~~i~~~~l~~~---~~~-----~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~ 524 (1073)
T 3gjx_A 456 YKNMRETLVYLTHLD--YVDTEIIMTKKLQNQ---VNG-----TEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIK 524 (1073)
T ss_dssp HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH---HTS-----CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhcCC--HHHHHHHHHHHHHHH---hcC-----CCCCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHH
Confidence 357888876665322 222222 23333332 111 23457889999999999986633 2222222 23677
Q ss_pred HHHHhhcCCC---HH--HHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 208 KLMKMVKSSF---VE--EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 208 ~Ll~LL~s~~---~~--vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.|+.+..... .. ++...+|.+|...|.-.... .|. .--+..|...+.++ +..++.-||..+..++.
T Consensus 525 ~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~-~~L-~~vl~~L~~~m~~~--~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 525 DLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHW-KFL-KTVVNKLFEFMHET--HDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH-HHHHHHHHHHTTCC--STTHHHHHHHHHHHHHH
T ss_pred HHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCH-HHH-HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHH
Confidence 7777765431 12 34455688888665421111 122 12344555666654 45689999999999986
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=81.26 E-value=4.3 Score=34.92 Aligned_cols=109 Identities=10% Similarity=0.124 Sum_probs=77.7
Q ss_pred cHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 205 ALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
.+..+|.-..+++. +.--..+-.|+-+|+..+.+... .+..|..-|.+. ++.++..|+.+|-.++. +.
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~-----a~ral~krl~~~--n~~v~l~AL~LLe~cvk----NC 79 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPL-----ATRLLAHKIQSP--QEWEAIQALTVLETCMK----SC 79 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HC
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----hc
Confidence 35555555555431 11234666788888887654333 244677777765 67889999999999986 45
Q ss_pred CCCCchhhhhcCchHHHHHhhcC------CChhHHHHHHHHHHHHHh
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~~------~d~~v~EkAL~aL~~L~~ 324 (390)
.+.+...+.+..|+..|+.++.. .+..|+++++..+..-..
T Consensus 80 G~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 80 GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 66666777888899999999963 578999999988888764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 390 | ||||
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 4e-11 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-07 |
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.8 bits (146), Expect = 4e-11
Identities = 56/263 (21%), Positives = 104/263 (39%), Gaps = 25/263 (9%)
Query: 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------- 168
E++++ L+ S + ++ + AL+ L L E +DNA
Sbjct: 3 EVEQMKSCLRVLSQPMPPTAGEAE---QAADQQEREGALELLADLCENMDNAADFCQLSG 59
Query: 169 ------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEA 221
L +R +A ++G SQN +Q+QVL LGAL KL++++ +
Sbjct: 60 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 119
Query: 222 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 281
VKAL+ +S L+R AG F G +L + ++ K+ L+ +L E
Sbjct: 120 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL--KVKSAFLLQNLLVGHPE 177
Query: 282 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL-RTTEALVLKDFCGLD 340
+ ++ +V L + E L A+ +L+ + GL+
Sbjct: 178 HKGT-----LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLE 232
Query: 341 TALERLRQQLQEVMLEEDQRDYA 363
L Q LQ+ +++ ++
Sbjct: 233 ELLRHRCQLLQQHEEYQEELEFC 255
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 23/203 (11%), Positives = 66/203 (32%), Gaps = 10/203 (4%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+ D + I A+ + + ++QV +LG + KL+ +++S A + +
Sbjct: 11 LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRN 70
Query: 231 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 290
L+ + + + L + + ++ L+ +L+ + L
Sbjct: 71 LVFRSTTNKLET-RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL 129
Query: 291 FRDRFFL---------KSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDT 341
+ + D ++ A ++NL + +D+
Sbjct: 130 PVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDS 189
Query: 342 ALERLRQQLQEVMLEEDQRDYAM 364
+ ++ + ++ + M
Sbjct: 190 LMAYVQNCVAASRCDDKSVENCM 212
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.97 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.58 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.56 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.52 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.5 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.49 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.09 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.02 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.78 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.64 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 97.63 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.59 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.45 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.41 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.35 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.3 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.27 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.16 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.16 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.03 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.85 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 96.82 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 96.23 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 95.86 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 95.28 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 94.44 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 94.38 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 94.01 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 93.77 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 93.26 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 92.56 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 92.54 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 92.32 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 91.97 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 91.96 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 89.58 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 86.89 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 86.34 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 85.29 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 84.81 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 83.66 | |
| d1elka_ | 153 | Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | 81.27 |
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.8e-29 Score=236.21 Aligned_cols=231 Identities=24% Similarity=0.279 Sum_probs=195.2
Q ss_pred ChHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHHHhhccccccc-------------ccCCCCChHHHHHHHH
Q 016423 128 SDAQLIQIAIDDLNNST----------LSLEDSQRALQELLILVEPIDNAN-------------GQLNHPDTDIRKISAW 184 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~~~----------~s~e~~~~aLd~Le~lve~IDnAn-------------~lL~s~~~~vR~~Aa~ 184 (390)
.|++.||+++.++.++. .+.+.+..||+.|.+|++++|||+ .+|+++++++|..|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~ 81 (264)
T d1xqra1 2 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ 81 (264)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhccCcchHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHH
Confidence 37899999999999883 457889999999999999999998 5788999999999999
Q ss_pred HHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHH
Q 016423 185 ILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIR 263 (390)
Q Consensus 185 vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~k 263 (390)
+|+++++|||.+|..+.+.|++|.|+.++.++ +..++.+|++||+++++++++++..|...||++.|+.+|.++ +.+
T Consensus 82 ~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~ 159 (264)
T d1xqra1 82 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQK 159 (264)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHH
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC--chH
Confidence 99999999999999999999999999999754 577999999999999999999999999999999999999987 677
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhC--CcHH
Q 016423 264 LHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFC--GLDT 341 (390)
Q Consensus 264 lr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~--gL~~ 341 (390)
++.+++++|.+|+. .+++.+..+.+.|+++.|+++|.++|.+++++|+.+|.+|+...+.....+. .. ++..
T Consensus 160 ~~~~a~~~L~~l~~-----~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~-~~~l~~~~ 233 (264)
T d1xqra1 160 LKVKSAFLLQNLLV-----GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEE 233 (264)
T ss_dssp HHHHHHHHHHHHHH-----HCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHH
T ss_pred HHHHHHHHHHHHHh-----ccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHH-HhhhhHHH
Confidence 99999999999995 4678888999999999999999999999999999999999987666555544 32 3445
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHH
Q 016423 342 ALERLRQQLQEVMLEEDQRDYAMDV 366 (390)
Q Consensus 342 ~L~~Lr~~l~el~~~e~~~ey~~dl 366 (390)
.+..+.+.+.......+..+|+..|
T Consensus 234 ~L~~~~~~~~~~~~~~e~~~~~~~l 258 (264)
T d1xqra1 234 LLRHRCQLLQQHEEYQEELEFCEKL 258 (264)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHH
Confidence 5554433333322233344444443
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4e-15 Score=137.74 Aligned_cols=170 Identities=14% Similarity=0.032 Sum_probs=146.6
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 250 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~-LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~ 250 (390)
.+.+.+.|..|+.+|+.++.+ ......+.+.|++++|+. ++++++.++|..|+++|++++++++..+..+...||++.
T Consensus 27 ~~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~ 105 (264)
T d1xqra1 27 QAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 105 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 456778999999999999854 667888999999999986 677888899999999999999999999999999999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHH
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 330 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r 330 (390)
|+.+|.++ .++.++.+++++|++|+. .++.....+...|.++.++.+|.+++..++.+++.+|.+|+...+..+
T Consensus 106 Lv~lL~~~-~~~~v~~~a~~aL~~l~~-----~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 179 (264)
T d1xqra1 106 LLRLLDRD-ACDTVRVKALFAISCLVR-----EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 179 (264)
T ss_dssp HHHHHHHC-SCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHhc-----cchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHH
Confidence 99999754 267799999999999995 455667788899999999999999999999999999999998766677
Q ss_pred HHHHhhCCcHHHHHHHHH
Q 016423 331 LVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 331 ~~~~~~~gL~~~L~~Lr~ 348 (390)
..+...+++..++..|++
T Consensus 180 ~~~~~~~~v~~L~~lL~~ 197 (264)
T d1xqra1 180 GTLCSMGMVQQLVALVRT 197 (264)
T ss_dssp HHHHHTTHHHHHHHHHTS
T ss_pred HHHHHhhhHHHHHHHHcC
Confidence 777756666776666654
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=5.4e-14 Score=139.67 Aligned_cols=165 Identities=17% Similarity=0.171 Sum_probs=143.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.+++.+++..|+|+|++++..++.+++.+++.|++++|+.++.+....++..++|+|++++++..+........+++
T Consensus 169 ~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l 248 (503)
T d1wa5b_ 169 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 248 (503)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGH
T ss_pred HHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999888899999999999999987776666778999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 328 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~ 328 (390)
+.|..++.++ +..++..+++.|++|+. .+++....+.+.|+++.++.++.+++..++..++.++++++.....
T Consensus 249 ~~l~~~l~~~--d~~~~~~~~~~l~~l~~-----~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~ 321 (503)
T d1wa5b_ 249 PTLAKLIYSM--DTETLVDACWAISYLSD-----GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL 321 (503)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHHHS-----SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhccc--cHHHHHHHHHHHHhhcc-----CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHH
Confidence 9999999886 56789999999999983 4555667788999999999999999999999999999999987654
Q ss_pred HHHHHHhhCCcHH
Q 016423 329 EALVLKDFCGLDT 341 (390)
Q Consensus 329 ~r~~~~~~~gL~~ 341 (390)
....+. .+|+-+
T Consensus 322 ~~~~~~-~~~~l~ 333 (503)
T d1wa5b_ 322 QTQVVI-NAGVLP 333 (503)
T ss_dssp HHHHHH-HTTHHH
T ss_pred HHHhhh-ccchHH
Confidence 444444 455433
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.2e-14 Score=135.14 Aligned_cols=175 Identities=14% Similarity=0.179 Sum_probs=139.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
++|+++++++|..|+++|+++|.+|+..|..+.+.|++|+|+++|+++++.++..|++||.+|+.+++..+..+.+.||+
T Consensus 9 ~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v 88 (457)
T d1xm9a1 9 QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGI 88 (457)
T ss_dssp HHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhh---------------cCCChhHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT---------------ASADLDLQE 313 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL---------------~~~d~~v~E 313 (390)
+.|+.++.+. .+..++..|++++.+|+. .+.....+...|+...+..++ ...+..+++
T Consensus 89 ~~li~~l~~~-~~~~~~~~a~~~l~~l~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (457)
T d1xm9a1 89 REAVSLLRRT-GNAEIQKQLTGLLWNLSS------TDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHHHHHHTTC-CCHHHHHHHHHHHHHHHT------SSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHHHHHHhcc-CcHHHHHHHHHHHHHHHh------hhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence 9999999765 367789999999999984 344444455555544444332 345789999
Q ss_pred HHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHHH
Q 016423 314 KALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQ 351 (390)
Q Consensus 314 kAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l~ 351 (390)
.++.++..+.... ..+.......|+ ..++..+++...
T Consensus 162 ~a~~~l~~~~~~~-~~~~~~~~~~~~i~~l~~ll~~~~~ 199 (457)
T d1xm9a1 162 NATGCLRNLSSAD-AGRQTMRNYSGLIDSLMAYVQNCVA 199 (457)
T ss_dssp HHHHHHHHHTTSH-HHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHhccHHHHHHHHhcchh
Confidence 9999999998764 344444434554 555555554443
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.52 E-value=3.7e-13 Score=129.37 Aligned_cols=151 Identities=13% Similarity=0.166 Sum_probs=138.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.++.++++.++..|+++|++++.+++.....+++.|+++.|+.++++.+.+++..|+++|++++++++.....+...|++
T Consensus 237 ~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 316 (434)
T d1q1sc_ 237 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316 (434)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred cccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhH
Confidence 57788999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+.++.++.++ +.+++..|+++|.+++. ..+++....+.+.|+++.|+.+|.+.|.+++..++.+|.+|...
T Consensus 317 ~~li~~l~~~--~~~v~~~a~~~l~nl~~----~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~ 387 (434)
T d1q1sc_ 317 PFLVGVLSKA--DFKTQKEAAWAITNYTS----GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 387 (434)
T ss_dssp HHHHHHHHSS--CHHHHHHHHHHHHHHHH----HSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc--ChHHHHHHHHHHHHHHh----cCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999886 67899999999999986 23455567788999999999999999999999999999999853
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=5.4e-13 Score=132.95 Aligned_cols=215 Identities=14% Similarity=0.160 Sum_probs=164.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------------ccCCCCChHHHHHHHHHHHHHhhCChHHHH
Q 016423 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNPLVQK 198 (390)
Q Consensus 131 ~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~ 198 (390)
..+...+..|.+++ +.+-+..+...|..+.+.-++.. .+|++++++++..|+++|++++.+++..|.
T Consensus 59 ~~v~~l~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 137 (529)
T d1jdha_ 59 QMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137 (529)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred hHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhh
Confidence 44555566665543 45667777777777776655543 678999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhh
Q 016423 199 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 278 (390)
Q Consensus 199 ~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~ 278 (390)
.+.+.|++|+|+.+|++++.+++..+.++|.+++.+++.....+...||++.|..++..+. ...++..++.++.+++..
T Consensus 138 ~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~l~~ls~~ 216 (529)
T d1jdha_ 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhh-hHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999998888899999999999999997552 556888899999988631
Q ss_pred h-----h-h------------cCCC---------------CCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 279 Q-----L-E------------NMHK---------------VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 279 ~-----l-~------------~~~~---------------~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
. + + ..++ .........|+++.|+.++.++|..+++.|+.+|.+|...
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~ 296 (529)
T d1jdha_ 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccc
Confidence 0 0 0 0000 0011112347778888888888888999999999999877
Q ss_pred ChhHHHHHHhhCCcHHHHHHHH
Q 016423 326 RTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 326 ~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
.+..+..+.+.+++..++..+.
T Consensus 297 ~~~~~~~i~~~~~i~~Li~~l~ 318 (529)
T d1jdha_ 297 NYKNKMMVCQVGGIEALVRTVL 318 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhHHHHHHHHH
Confidence 6666666665666666666554
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=1.4e-12 Score=129.28 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=145.9
Q ss_pred ccCC-CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~-s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+|. +.++.++..|+|+|++++..++.....+.+.|++|.|+.+|.+++.+++..|+|+|++++.+++.....+...||
T Consensus 126 ~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~ 205 (503)
T d1wa5b_ 126 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 205 (503)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcc
Confidence 4665 456789999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
++.|..++.++ +..+++.++|+|++|+. ............++++.++.++.+.|.+++..++.++..|+...+
T Consensus 206 ~~~L~~ll~~~--~~~~~~~~~~~l~nl~~-----~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~ 278 (503)
T d1wa5b_ 206 MEPILGLFNSN--KPSLIRTATWTLSNLCR-----GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 278 (503)
T ss_dssp HHHHHHGGGSC--CHHHHHHHHHHHHHHHC-----CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH
T ss_pred cccchhhcccC--CHHHHHHHHHHHHHHhc-----CCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCc
Confidence 99999999876 56789999999999995 333444455667999999999999999999999999999998766
Q ss_pred hHHHHHHhhCCcHHHHHHHH
Q 016423 328 TEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~Lr 347 (390)
+....+...+.+..++..++
T Consensus 279 ~~~~~~~~~~~~~~l~~ll~ 298 (503)
T d1wa5b_ 279 EAIQAVIDVRIPKRLVELLS 298 (503)
T ss_dssp HHHHHHHHTTCHHHHHHGGG
T ss_pred hhhhhhhhhhhhhhhhhccc
Confidence 66555554444555555543
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=1.2e-12 Score=125.61 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=141.9
Q ss_pred ccCC-CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~-s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
++|+ ++++++|..|+|+|++++..++.....+.+.|++|.|+.+|.+++..++..|++||++++.+++.....+...||
T Consensus 63 ~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~ 142 (434)
T d1q1sc_ 63 SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 142 (434)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhh
Confidence 4564 456789999999999999999999999999999999999999998999999999999999999888888999999
Q ss_pred HHHHHHHhcCCC---hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 248 DLMLQDILGNSS---FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 248 l~~L~~lL~s~~---~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+..|..++..+. ......+.+++.+++++. ..+.........++++.++.++.++|.+++..++.+|..|..
T Consensus 143 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~ 217 (434)
T d1q1sc_ 143 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR-----NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 217 (434)
T ss_dssp HHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTC-----CCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHhcccccchHHHHHHHHHHHHHHhh-----cccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccch
Confidence 999999998653 234566778899998884 334445555677899999999999999999999999999998
Q ss_pred cChhHHHHHHhhCCcHHHHHHHH
Q 016423 325 LRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 325 ~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
..+.....+...+.+..++..++
T Consensus 218 ~~~~~~~~~~~~~~~~~Lv~ll~ 240 (434)
T d1q1sc_ 218 GPNERIEMVVKKGVVPQLVKLLG 240 (434)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHT
T ss_pred hhhhhHHHHhhcccchhcccccc
Confidence 76555555543344455555443
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.2e-12 Score=130.47 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=143.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
++|++++..+|..|+.+++.++.+++.....+...|+++.|+++|.+. +.+++..|+.+|..++. +++....+.+.||
T Consensus 24 ~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~ 102 (529)
T d1jdha_ 24 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGG 102 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCC
Confidence 467889999999999999999877654444333447899999999764 56789999999999985 5677788999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
++.|+.+|+++ +..++..|+++|.+|+. .++..+..+.+.|.++.|+.+|++++..+++.++.+|..|+...+
T Consensus 103 i~~Li~lL~~~--~~~v~~~a~~aL~~l~~-----~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 175 (529)
T d1jdha_ 103 IPALVKMLGSP--VDSVLFYAITTLHNLLL-----HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHH-----HCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHhhc-----ccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhh
Confidence 99999999986 67799999999999995 355667778899999999999999999999999999999998776
Q ss_pred hHHHHHHhhCCcHHHHHHHHH
Q 016423 328 TEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
..+..+...+++...+..|+.
T Consensus 176 ~~~~~~~~~~~~~~L~~ll~~ 196 (529)
T d1jdha_ 176 ESKLIILASGGPQALVNIMRT 196 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHh
Confidence 777777756667777776653
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=4.2e-11 Score=112.13 Aligned_cols=117 Identities=14% Similarity=0.132 Sum_probs=106.1
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 204 g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
+.||.|+++|++++++++..|.++|++++.+++..+..+...||++.|+++|.++ +.++|..|+++|.+|+. .
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~L~~-----~ 74 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP--NQNVQQAAAGALRNLVF-----R 74 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHHS-----S
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCC--CHHHHHHHHHHHHHHHc-----C
Confidence 4689999999999999999999999999999999999999999999999999987 67789999999999984 4
Q ss_pred CCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhcCh
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~~~ 327 (390)
+++.+..+.+.|.++.++.++.+. +..+++.|+.+|.+|.....
T Consensus 75 ~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~ 119 (457)
T d1xm9a1 75 STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119 (457)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS
T ss_pred CHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh
Confidence 566778899999999999998764 78899999999999998653
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.09 E-value=1.8e-07 Score=74.42 Aligned_cols=109 Identities=10% Similarity=0.064 Sum_probs=87.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHH
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 250 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~ 250 (390)
|+++++.||..|+++||.+- ...++.|+.+|++++..+|..|+++|+.+. . ...++.
T Consensus 1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--~---------~~~~~~ 57 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ--D---------ERAVEP 57 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGC--S---------HHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc--h---------hhhHHH
Confidence 56788999999999998752 136889999999988899999999998642 1 124678
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHH
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 320 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~ 320 (390)
|..+|.++ +..+|..|+..|..+- ..+.++.|..++..++..++..|+.+|.
T Consensus 58 L~~~l~d~--~~~VR~~a~~aL~~i~----------------~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 58 LIKLLEDD--SGFVRSGAARSLEQIG----------------GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHC--CTHHHHHHHHHHHHHC----------------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHhhhccc--hhHHHHHHHHHHHHhC----------------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88999876 6678999999998764 2356888889999999999999988764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=3.4e-05 Score=76.15 Aligned_cols=162 Identities=11% Similarity=0.024 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHhhccccccc----------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC
Q 016423 146 SLEDSQRALQELLILVEPIDNAN----------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 215 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnAn----------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s 215 (390)
...-|..+++.+..++..+..-. .+|..+...||..|++++|.++++... + ......+|.+..++++
T Consensus 415 ~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~--~-~~~~~i~~~l~~~~~~ 491 (588)
T d1b3ua_ 415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--E-WAHATIIPKVLAMSGD 491 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--H-HHHHHTHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc--H-HHHHHHHHHHHHHhcC
Confidence 44556666666666655442221 567788899999999999999876321 1 1223478999999988
Q ss_pred CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcC
Q 016423 216 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 295 (390)
Q Consensus 216 ~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g 295 (390)
.+...|..++++++.+....+. .+....-++.|..++.++ .+.+|..++.+|..+... . ........
T Consensus 492 ~~~~~R~~~~~~l~~l~~~~~~---~~~~~~ilp~ll~~~~D~--v~nVR~~a~~~l~~i~~~----~----~~~~~~~~ 558 (588)
T d1b3ua_ 492 PNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI----L----DNSTLQSE 558 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG----S----CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCh---HHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHH----c----CcHhHHHH
Confidence 8888899999999998765443 233445788899998876 566889999999998742 1 12233445
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 296 FLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 296 ~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
+.+.+..+++.+|.+|+..|..||..|+
T Consensus 559 i~~~l~~L~~D~d~dVr~~A~~al~~l~ 586 (588)
T d1b3ua_ 559 VKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 6677777777789999999999998764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00039 Score=68.27 Aligned_cols=163 Identities=10% Similarity=0.071 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHhhccccccc---------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC
Q 016423 147 LEDSQRALQELLILVEPIDNAN---------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 217 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~IDnAn---------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~ 217 (390)
...|..|..-+..+....+... .++.++++.||..|+.+++.+++.-+. .......+|.|..++++++
T Consensus 140 ~~~r~~a~~ll~~~~~~~~~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~ 216 (588)
T d1b3ua_ 140 FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQ 216 (588)
T ss_dssp HHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSC
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCc
Confidence 3445555555555544444332 456789999999999999999987431 2333456788889998888
Q ss_pred HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCch
Q 016423 218 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 297 (390)
Q Consensus 218 ~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v 297 (390)
..+|..|+.+++.++...++.. ....-++.+..++.++ +.++|.-++..+..++... . .......++
T Consensus 217 ~~vr~~a~~~l~~i~~~~~~~~---~~~~i~~~l~~~~~D~--~~~Vr~~~~~~l~~l~~~~----~----~~~~~~~l~ 283 (588)
T d1b3ua_ 217 DSVRLLAVEACVNIAQLLPQED---LEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAV----G----PEITKTDLV 283 (588)
T ss_dssp HHHHTTHHHHHHHHHHHSCHHH---HHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHHH----C----HHHHHHTHH
T ss_pred hhhHHHHHHHHHHhhccCCHHH---HHHHHHHHHHHhcccc--cHHHHHHHHHhHHHHHHHh----h----hhhhhhhhh
Confidence 8999999999999887655421 1223467888888776 6778999999999987521 1 123345688
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 298 KSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 298 ~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+.+..++...+.+++..|+.++..+...
T Consensus 284 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T d1b3ua_ 284 PAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888754
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00023 Score=74.07 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=107.2
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
..+.+++..+|..|+.++|.++.+.+..-...+. ..+|.|+..++++++.+|..|+|+||.++....+....-+-...+
T Consensus 402 ~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 480 (888)
T d1qbkb_ 402 ELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 480 (888)
T ss_dssp HTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHH
T ss_pred HhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Confidence 4678889999999999999998765433222222 367889999998888999999999999876543332222224567
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+.|...+.++ +.+++.+|+++|..++.. ..+...+.+ ..+++.++..+...+......++.++.+++.
T Consensus 481 ~~ll~~l~d~--~~~V~~~a~~al~~l~~~----~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~ 548 (888)
T d1qbkb_ 481 TELLKRILDS--NKRVQEAACSAFATLEEE----ACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLAD 548 (888)
T ss_dssp HHHHHHHSSS--CHHHHHHHHHHHHHHHHH----HTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHH----hhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7777777775 678999999999999863 344444443 3577888888888877777777788877764
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.0014 Score=60.51 Aligned_cols=189 Identities=13% Similarity=0.110 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc-c-------------ccCCCCChHHHHHHHHHHHHHhhCChH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-N-------------GQLNHPDTDIRKISAWILGKASQNNPL 195 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnA-n-------------~lL~s~~~~vR~~Aa~vLgta~QNNp~ 195 (390)
..++...+..+.+...+.+-+..++..+-.+++....- . .++.++++++|..++++++.+++..|.
T Consensus 170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 249 (458)
T d1ibrb_ 170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249 (458)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34667777778877778888888888888877654321 1 467889999999999999999988765
Q ss_pred HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc--------------------c------------------
Q 016423 196 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL--------------------A------------------ 237 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~--------------------~------------------ 237 (390)
.=...+.....+.+....+++...++..|+..+++++.... .
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 329 (458)
T d1ibrb_ 250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 329 (458)
T ss_dssp GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhh
Confidence 32222222223334444555556666666655555432100 0
Q ss_pred -----------------c---hHHHHHcC-------cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchh
Q 016423 238 -----------------G---QEMFYVEA-------GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 290 (390)
Q Consensus 238 -----------------a---~~~f~~~g-------Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~ 290 (390)
+ ...+.... -++.+...++++ +.+.|.-|+.+|..++.. ..+.....
T Consensus 330 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~--~~~~r~aal~~l~~i~~~----~~~~~~~~ 403 (458)
T d1ibrb_ 330 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEG----PEPSQLKP 403 (458)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSS----SCTTTTCT
T ss_pred hcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHh----cCHhHHHH
Confidence 0 00011111 123444555554 677888888888888731 11222222
Q ss_pred hhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 291 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 291 l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+ -..+++.++..+++++..+|..|+.+|+.++..
T Consensus 404 ~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 404 L-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp T-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 2 246889999999999999999999999999864
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.00059 Score=59.67 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=61.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
++|+++++.||..|+.+|+... ++ .++|.|+.++++++..+|..|+.+|+.+-..... ... .+
T Consensus 26 ~~L~d~~~~vR~~A~~~L~~~~--~~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~~-----~~ 88 (276)
T d1oyza_ 26 RLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-EDN-----VF 88 (276)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HHH-----HH
T ss_pred HHhcCCCHHHHHHHHHHHHhhC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ccc-----hH
Confidence 4678899999999999998773 11 2578899999888888898999988877432221 111 12
Q ss_pred HHHHH-HhcCCChhHHHHHHHHHHHHHHhh
Q 016423 249 LMLQD-ILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 249 ~~L~~-lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
..+.. ++.++ +..++..++..|..+..
T Consensus 89 ~~l~~~~l~d~--~~~vr~~a~~aL~~~~~ 116 (276)
T d1oyza_ 89 NILNNMALNDK--SACVRATAIESTAQRCK 116 (276)
T ss_dssp HHHHHHHHHCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--ChhHHHHHHHHHHHHcc
Confidence 23333 34444 56688888888887764
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.35 E-value=0.0013 Score=65.63 Aligned_cols=187 Identities=10% Similarity=0.073 Sum_probs=123.1
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccc----------------cc---------ccCCCCChHHHHHH
Q 016423 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN----------------AN---------GQLNHPDTDIRKIS 182 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDn----------------An---------~lL~s~~~~vR~~A 182 (390)
+.++.+..+++++.+.+.+.+-|..|.--|.-.+..-+. .. ..|.++++.||..+
T Consensus 36 ~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~ 115 (861)
T d2bpta1 36 NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAA 115 (861)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 456778888888888777777777665555544433211 10 45678899999999
Q ss_pred HHHHHHHhhCChHHHHHHHhc---CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH---HHHh
Q 016423 183 AWILGKASQNNPLVQKQVLEL---GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML---QDIL 255 (390)
Q Consensus 183 a~vLgta~QNNp~~Q~~~le~---g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L---~~lL 255 (390)
+.+++.++... +-+. ..++.|+..+.+++ ..++..|+.+++.++...++....+. ....++| ...+
T Consensus 116 a~~i~~i~~~~------~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~-~~~~~il~~i~~~~ 188 (861)
T d2bpta1 116 AQLIAAIADIE------LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALV-SSSNNILIAIVQGA 188 (861)
T ss_dssp HHHHHHHHHHH------GGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTG-GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------CCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999986531 1111 25778888887655 56788899999999987655433222 1122333 3333
Q ss_pred cCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 256 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 256 ~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.++..+..++..++..+.+++... ............+++.+...+..++.+++..++.++..++..
T Consensus 189 ~~~~~~~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~ 254 (861)
T d2bpta1 189 QSTETSKAVRLAALNALADSLIFI----KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp STTCCCHHHHHHHHHHHHHHGGGC----HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred hcccCCHHHHHHHHHHHHHHHHHH----hHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 443346778889999998887521 111111122345677888888999999999999999998863
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.0083 Score=63.26 Aligned_cols=147 Identities=10% Similarity=0.076 Sum_probs=104.2
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-----hHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----QEMFY 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-----~~~f~ 243 (390)
++|+.++++||..|+.|+|.++.--+..+. ...++.|+..+.+++..+|..+..+|..++...+.. .....
T Consensus 52 ~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~ 127 (1207)
T d1u6gc_ 52 KLLEDKNGEVQNLAVKCLGPLVSKVKEYQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV 127 (1207)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH
Confidence 467889999999999999999887654332 235788888887777677877777888877654432 12222
Q ss_pred HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 244 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 244 ~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
....++.+...+... .+..++..++.++..++.. ..+...+. ...+++.++..|.+++..++..|+.||..|+
T Consensus 128 ~~~l~~~l~~~~~~~-~~~~v~~~al~~l~~l~~~----~g~~l~~~--~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~ 200 (1207)
T d1u6gc_ 128 CKKITGRLTSAIAKQ-EDVSVQLEALDIMADMLSR----QGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLV 200 (1207)
T ss_dssp HHHHHHHHHHHHSCC-SCHHHHHHHHHHHHHHHHH----TCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHH----hhHhhHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 233445555555554 3677889999999999863 22222222 2357888889999999999999999999998
Q ss_pred hcC
Q 016423 324 QLR 326 (390)
Q Consensus 324 ~~~ 326 (390)
...
T Consensus 201 ~~~ 203 (1207)
T d1u6gc_ 201 MSC 203 (1207)
T ss_dssp TTC
T ss_pred HHC
Confidence 753
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.0048 Score=63.76 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=107.9
Q ss_pred CCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHH
Q 016423 172 NHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 250 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~ 250 (390)
..++.++...+..+++.+++. .+.....+.....++.++..+.+.+..+|..|+.+++.++++.++....+.. .-++.
T Consensus 632 ~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~ 710 (888)
T d1qbkb_ 632 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPI 710 (888)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHH
Confidence 456777888888899888875 3334444555577888999999888899999999999999887766544432 24566
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCC--hhHHHHHHHHHHHHHhc
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD--LDLQEKALAAIKNLLQL 325 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d--~~v~EkAL~aL~~L~~~ 325 (390)
|...|.++ ...++..|+|++..|+.. ..++..+.+ ..+++.|+.++++++ ..+.+.++.||+-|+..
T Consensus 711 l~~~L~~~--~~~v~~~a~~~ig~ia~~----~~~~~~py~--~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~ 779 (888)
T d1qbkb_ 711 LGTNLNPE--FISVCNNATWAIGEISIQ----MGIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV 779 (888)
T ss_dssp HHHTCCGG--GHHHHHHHHHHHHHHHHH----TGGGGGGGS--HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcC--CHHHHHHHHHHHHHHHHH----HHHHhhhhH--HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence 77777664 567899999999999963 233444433 368889999998764 45899999999988864
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.00048 Score=73.17 Aligned_cols=172 Identities=13% Similarity=0.078 Sum_probs=109.0
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhccccccc---------ccCCCCChHHHHHHHHHHHHHhhCChHH--------------
Q 016423 140 LNNSTLSLEDSQRALQELLILVEPIDNAN---------GQLNHPDTDIRKISAWILGKASQNNPLV-------------- 196 (390)
Q Consensus 140 l~~~~~s~e~~~~aLd~Le~lve~IDnAn---------~lL~s~~~~vR~~Aa~vLgta~QNNp~~-------------- 196 (390)
..++......+..++-.|-++....+... ..+++++++||..|+.++|.++..|+..
T Consensus 822 ~~~~~~~~~~~~~al~~Lge~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~ 901 (1207)
T d1u6gc_ 822 VKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPK 901 (1207)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGG
T ss_pred HhcccchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHhcCch
Confidence 33444455666666666655554444332 5778999999999999999998877532
Q ss_pred -HHHH-------Hhc-C------cHHHHHHhh----cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcC
Q 016423 197 -QKQV-------LEL-G------ALSKLMKMV----KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 257 (390)
Q Consensus 197 -Q~~~-------le~-g------~l~~Ll~LL----~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s 257 (390)
|..+ +.. + ..+.++..| .+....+|..+..+|+.|+.-+|.. -++.|...+.+
T Consensus 902 ~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~~--------~lp~L~~~l~~ 973 (1207)
T d1u6gc_ 902 RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET--------LLPRLKGYLIS 973 (1207)
T ss_dssp GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGG--------THHHHTTTSSS
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHhCC
Confidence 1111 111 1 122333332 3333456666777777776655542 35677777777
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 258 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 258 ~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+ +..+|.-++.++.+++.. ......+ .. ..+++.++..|+.+|.+++..|+.+|.++++..+
T Consensus 974 ~--~~~~r~~ai~~l~~~~~~----~~~~~~~-~l-~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p 1035 (1207)
T d1u6gc_ 974 G--SSYARSSVVTAVKFTISD----HPQPIDP-LL-KNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP 1035 (1207)
T ss_dssp S--CHHHHHHHHHHTGGGCCS----SCCTHHH-HH-HHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCG
T ss_pred C--CHHHHHHHHHHHHHHHHh----cchhhHH-HH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh
Confidence 6 566788888888888751 2222222 22 2456667788899999999999999999997543
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.16 E-value=9.7e-05 Score=57.88 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=61.9
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+|+++++.||..|+++||.+. .+ +++|.|+.+|++++..||..|+.||+.+- . ...++
T Consensus 30 ~l~d~~~~vR~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~VR~~a~~aL~~i~--~---------~~~~~ 87 (111)
T d1te4a_ 30 SLSNEDWRIRGAAAWIIGNFQ--DE---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG--G---------ERVRA 87 (111)
T ss_dssp GGGCSCHHHHHHHHHHHGGGC--SH---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--S---------HHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhcc--hh---------hhHHHHHhhhccchhHHHHHHHHHHHHhC--c---------cchHH
Confidence 567889999999999999763 11 35899999999888899999999999761 1 23467
Q ss_pred HHHHHhcCCChhHHHHHHHHHHH
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLV 272 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LL 272 (390)
.|..++.++ +..+|..|+..|
T Consensus 88 ~L~~ll~d~--~~~vr~~A~~aL 108 (111)
T d1te4a_ 88 AMEKLAETG--TGFARKVAVNYL 108 (111)
T ss_dssp HHHHHTTSC--CTHHHHHHHHHG
T ss_pred HHHHHHcCC--CHHHHHHHHHHH
Confidence 888888876 566888877665
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00095 Score=61.74 Aligned_cols=190 Identities=10% Similarity=-0.025 Sum_probs=117.7
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc---------------ccc---------ccCCCCChHHHHHHH
Q 016423 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID---------------NAN---------GQLNHPDTDIRKISA 183 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~ID---------------nAn---------~lL~s~~~~vR~~Aa 183 (390)
+.++.+-.+++++.+...+..-|..|.--|...+...+ .-. +.+.++++.+| .++
T Consensus 31 ~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~ 109 (458)
T d1ibrb_ 31 NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPS-SAS 109 (458)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHH
T ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHH
Confidence 44677888888888877777766655443333332211 100 34555554444 566
Q ss_pred HHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChh
Q 016423 184 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE 261 (390)
Q Consensus 184 ~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~--~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d 261 (390)
.+++.++......+. -.+.++.|+..+.+.. ..++..++++++.++....+....-....-++.+...+.++..+
T Consensus 110 ~~~~~i~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~ 186 (458)
T d1ibrb_ 110 QCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS 186 (458)
T ss_dssp HHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHhCCccc---CcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccC
Confidence 677766543211110 1257888999887643 45777889999888766544322222233456777777765456
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 262 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 262 ~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..++..++..+..+.... ............+++.+..++..++.+++..++.++..++..
T Consensus 187 ~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~ 246 (458)
T d1ibrb_ 187 NNVKLAATNALLNSLEFT----KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 246 (458)
T ss_dssp HHHHHHHHHHHHHHTTTT----HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 778999999998887421 111111223345677788888888999999999999999864
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0037 Score=62.70 Aligned_cols=191 Identities=10% Similarity=-0.016 Sum_probs=121.8
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc---------------cccccc---------ccCCCCChHHHHHHH
Q 016423 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE---------------PIDNAN---------GQLNHPDTDIRKISA 183 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve---------------~IDnAn---------~lL~s~~~~vR~~Aa 183 (390)
+.+.-+..+++++.+.+.+.+-|..|.=-|.-.+. .++... +.|.+++. ++..+|
T Consensus 32 ~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a 110 (876)
T d1qgra_ 32 NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSAS 110 (876)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHH
T ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHH
Confidence 34677888888888887777777666544433332 222111 45666554 566689
Q ss_pred HHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChh
Q 016423 184 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE 261 (390)
Q Consensus 184 ~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~--~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d 261 (390)
.+|+.++...-....+ .+.+|.|++.+.+++ ..++..++.+++.++....+....-....-++.+...+.++..+
T Consensus 111 ~~i~~i~~~~~p~~~W---peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~ 187 (876)
T d1qgra_ 111 QCVAGIACAEIPVNQW---PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS 187 (876)
T ss_dssp HHHHHHHHHHGGGTCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSC
T ss_pred HHHHHHHHHHCCcccc---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCcc
Confidence 9999986541000000 257899999886644 56788899999999876544322112233467778888765456
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 262 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 262 ~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
..++..++..+.++.... .+.........-+++.+...+.+++.+++..++.++..+....
T Consensus 188 ~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~ 248 (876)
T d1qgra_ 188 NNVKLAATNALLNSLEFT----KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (876)
T ss_dssp HHHHHHHHHHHHHHGGGC----HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 778888888888776421 1111111122346677788888899999999999999998753
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.062 Score=46.06 Aligned_cols=94 Identities=10% Similarity=0.027 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccc---cc-----ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHh
Q 016423 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN---AN-----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 202 (390)
Q Consensus 131 ~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDn---An-----~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le 202 (390)
+.+...+..++++ +.+-+..|...|..+-..-.. .. .+|+++++.||..|+.+|+.++..++..-.
T Consensus 50 ~~~~~l~~~l~d~--~~~vr~~a~~aL~~l~~~~~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~---- 123 (276)
T d1oyza_ 50 DAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP---- 123 (276)
T ss_dssp HHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH----
T ss_pred hHHHHHHHHHcCC--CHHHHHHHHHHHHHhccccccccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH----
Confidence 4455555556543 455566666666555432211 11 356778888888888888888766653322
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 016423 203 LGALSKLMKMVKSSFVEEAVKALYTVSSL 231 (390)
Q Consensus 203 ~g~l~~Ll~LL~s~~~~vr~kAL~ALSsL 231 (390)
..++.+...+.+....++..|+.+++.+
T Consensus 124 -~~~~~l~~~~~d~~~~vr~~a~~~l~~~ 151 (276)
T d1oyza_ 124 -KIVEQSQITAFDKSTNVRRATAFAISVI 151 (276)
T ss_dssp -HHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHhcCcchHHHHHHHHHHhhc
Confidence 2466777777777777777777776654
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.28 E-value=0.11 Score=51.07 Aligned_cols=145 Identities=9% Similarity=0.052 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc---------------c-cC-CCCChHHHHHHHHHHHHHhhC
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN---------------G-QL-NHPDTDIRKISAWILGKASQN 192 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn---------------~-lL-~s~~~~vR~~Aa~vLgta~QN 192 (390)
+++|...++.+.+. .+...+..+|.-|.++++.++.-. . +. ...+..+|..|..+++..+..
T Consensus 133 peli~~L~~~~~s~-~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~ 211 (861)
T d2bpta1 133 PELMKIMVDNTGAE-QPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp HHHHHHHHHHTSTT-SCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 46666666665543 356677888999999998876543 1 12 356688999999999999887
Q ss_pred ChHHHHHH-HhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHH
Q 016423 193 NPLVQKQV-LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 271 (390)
Q Consensus 193 Np~~Q~~~-le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~L 271 (390)
-+...... .....++.|...+.+++..++..++.++..++..++.....+...--..++.....+. +..++..++-+
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~v~~~~~~~ 289 (861)
T d2bpta1 212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP--NDKVASMTVEF 289 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHH
T ss_pred HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHH
Confidence 65443211 1123567788888888889999999999999988776555444333333444444444 55677777777
Q ss_pred HHHHhh
Q 016423 272 VGDLAK 277 (390)
Q Consensus 272 Ls~L~~ 277 (390)
+..++.
T Consensus 290 l~~l~~ 295 (861)
T d2bpta1 290 WSTICE 295 (861)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.44 E-value=0.11 Score=42.68 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=81.6
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC-h
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN-P 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN-p 194 (390)
++.+|=.......|.+.+.+..+.++.....+.+-..++-. -|+++++.++-.|..+|-++++|. +
T Consensus 9 ~iekAT~~~~~~~dw~~il~icD~I~~~~~~~k~a~ral~k-------------rl~~~n~~v~l~aL~LLd~~vkNcG~ 75 (145)
T d1dvpa1 9 NLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKK-------------KMNSPNPHSSCYSLLVLESIVKNCGA 75 (145)
T ss_dssp HHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHH-------------HHTCSSHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHcCcCCCCCCHHHHHHHHHHHhCCCccHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHccch
Confidence 44555554455678889999999998766556555544432 357889999999999999999995 7
Q ss_pred HHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCc
Q 016423 195 LVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~ 236 (390)
..+..+...+.+..|.+++++. +..|+.|++..|-+-...++
T Consensus 76 ~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (145)
T d1dvpa1 76 PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (145)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 7888888889999999999765 46789998877777655443
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.088 Score=43.20 Aligned_cols=108 Identities=11% Similarity=0.055 Sum_probs=78.3
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC-h
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN-P 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN-p 194 (390)
++.+|-+......|.+.+.+..+.++.....+.+-..+ |. +-|.+.++.++-.|..++-.+++|. +
T Consensus 5 liekAT~~~~~~~dw~~il~icD~I~~~~~~~k~a~ra---l~----------krl~~~n~~~~l~aL~LLe~~vkNcG~ 71 (143)
T d1mhqa_ 5 WLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWL---LA----------HKIQSPQEKEALYALTVLEMCMNHCGE 71 (143)
T ss_dssp HHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHH---HH----------HHHTCSSHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHH---HH----------HHHcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 44455444444566777888888877544333333322 21 1257889999999999999999995 9
Q ss_pred HHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhCCc
Q 016423 195 LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s------~~~~vr~kAL~ALSsLiR~~~ 236 (390)
.++..+.....+..|++++.. .+..|+.|++..|-+....++
T Consensus 72 ~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~ 119 (143)
T d1mhqa_ 72 KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (143)
T ss_dssp HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999973 246799999888877766654
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.21 Score=49.40 Aligned_cols=146 Identities=10% Similarity=0.081 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-------------ccCC--CCChHHHHHHHHHHHHHhhCCh
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-------------GQLN--HPDTDIRKISAWILGKASQNNP 194 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-------------~lL~--s~~~~vR~~Aa~vLgta~QNNp 194 (390)
++++...++.+.+++.+..-+..+|.-|.++++.++... ..+. .++..+|..|..++....+..+
T Consensus 127 peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~ 206 (876)
T d1qgra_ 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence 368888888888888888888889999999888765432 3343 3557899999999998877655
Q ss_pred HHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHH
Q 016423 195 LVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 273 (390)
Q Consensus 195 ~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs 273 (390)
......... -.++.+...+.+++..++..++.++..++..++.-...+....-...+...+.++ ...++..++.++.
T Consensus 207 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 284 (876)
T d1qgra_ 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWS 284 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHH
Confidence 433222111 2456677777777788999999999999999887666655555566777777765 4456777777766
Q ss_pred HHhh
Q 016423 274 DLAK 277 (390)
Q Consensus 274 ~L~~ 277 (390)
.++.
T Consensus 285 ~i~~ 288 (876)
T d1qgra_ 285 NVCD 288 (876)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.77 E-value=0.2 Score=40.97 Aligned_cols=108 Identities=17% Similarity=0.064 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|=+......|...+-+..+.++.......+ |+..|.. -|.+.++.+.-.|..+|-+++.| .+
T Consensus 12 ~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~---a~r~l~k----------rl~~~~~~~~l~aL~LLe~~vkNCG~ 78 (145)
T d1ujka_ 12 RINRATNPLNKELDWASINGFCEQLNEDFEGPPL---ATRLLAH----------KIQSPQEWEAIQALTVLETCMKSCGK 78 (145)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHTSSTTHHHH---HHHHHHH----------HHTCSSHHHHHHHHHHHHHHHTSCCH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHH---HHHHHHH----------HHcCCCHHHHHHHHHHHHHHHHHHhH
Confidence 4455554444556788888888888765433333 3333322 24778999999999999999999 59
Q ss_pred HHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhCCc
Q 016423 195 LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s------~~~~vr~kAL~ALSsLiR~~~ 236 (390)
.++..+...+.+..|+++++. .+..|+.|++..|-+-..++|
T Consensus 79 ~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp 126 (145)
T d1ujka_ 79 RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 126 (145)
T ss_dssp HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999963 345789999988887766664
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=93.26 E-value=0.0097 Score=53.23 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=12.5
Q ss_pred CcHHHHHHHhcCCChhHHHHHHHHH
Q 016423 246 AGDLMLQDILGNSSFEIRLHRKAVS 270 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d~klr~KA~~ 270 (390)
-|.+.|..+++++ +..+|..++.
T Consensus 162 ~~~~~L~~l~~D~--d~~VR~~aa~ 184 (233)
T d1lrva_ 162 LPEESLGLMTQDP--EPEVRRIVAS 184 (233)
T ss_dssp SCGGGGGGSTTCS--SHHHHHHHHH
T ss_pred cCHHHHHHHccCC--CHHHHHHHHH
Confidence 3445555656554 4556665553
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=92.56 E-value=0.019 Score=51.27 Aligned_cols=63 Identities=14% Similarity=0.027 Sum_probs=30.7
Q ss_pred cccccCCCCChHHHHHHHHH------HHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 016423 166 NANGQLNHPDTDIRKISAWI------LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTV 228 (390)
Q Consensus 166 nAn~lL~s~~~~vR~~Aa~v------Lgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~AL 228 (390)
.|+.+|.+++.++|..|+.- +.-+.-.+|.++..+.+.=+.+.|..++.+++..||..+..++
T Consensus 46 l~~~~l~~p~~e~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l 114 (233)
T d1lrva_ 46 LAVQYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRL 114 (233)
T ss_dssp GGGGGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHS
T ss_pred HHHHHhcCCcHHHHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhcc
Confidence 34456666666666655541 1111122444444444332234456666666666666555443
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.54 E-value=0.054 Score=53.08 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=58.2
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCC
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~ 235 (390)
+.++.+.+-||.=||..|...|.-+..+-+.|+=..+++|+.+++++||..||.|+.-++.++
T Consensus 413 s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~n 475 (477)
T d1ho8a_ 413 KQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT 475 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred CCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 457778899999999999999999999999999999999999999999999999999988764
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.32 E-value=0.061 Score=52.65 Aligned_cols=72 Identities=11% Similarity=0.172 Sum_probs=60.8
Q ss_pred CcHHHHHHhhcC----------CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHH
Q 016423 204 GALSKLMKMVKS----------SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 273 (390)
Q Consensus 204 g~l~~Ll~LL~s----------~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs 273 (390)
..+.+|+++|++ +++.+..=|++=|+.+||++|.+...+...||=..++.++.++ |+.+|..|+.++.
T Consensus 392 ~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~--d~~Vr~eAL~avQ 469 (477)
T d1ho8a_ 392 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS--DSRVKYEALKATQ 469 (477)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC--CHHHHHHHHHHHH
Confidence 357889999962 1234566788999999999999999999999999999999886 7889999999999
Q ss_pred HHhh
Q 016423 274 DLAK 277 (390)
Q Consensus 274 ~L~~ 277 (390)
-|+.
T Consensus 470 klm~ 473 (477)
T d1ho8a_ 470 AIIG 473 (477)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.97 E-value=1.5 Score=40.38 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=97.1
Q ss_pred hcCcHHHHHHhhc----C----CC---HHHHHHHHHHHHHHhhCCccchHHHH-HcCcHHHHHHHhcCCChhHHHHHHHH
Q 016423 202 ELGALSKLMKMVK----S----SF---VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAV 269 (390)
Q Consensus 202 e~g~l~~Ll~LL~----s----~~---~~vr~kAL~ALSsLiR~~~~a~~~f~-~~gGl~~L~~lL~s~~~d~klr~KA~ 269 (390)
..+|+..|+.+|. . .. ......++.+|-+++.+ .++...+. ..+++..|..+|.++ .++++.-|.
T Consensus 43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~--~~~tr~~a~ 119 (343)
T d2bnxa1 43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAA 119 (343)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCC--chHHHHHHH
Confidence 5567888888773 1 11 23455678888877754 56655555 456789999999886 677899999
Q ss_pred HHHHHHhhhhh-hcCCCCC------chhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhcChh------HHHHHHh
Q 016423 270 SLVGDLAKCQL-ENMHKVE------PPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTT------EALVLKD 335 (390)
Q Consensus 270 ~LLs~L~~~~l-~~~~~~~------~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~~~~------~r~~~~~ 335 (390)
-+|+.+|.-.. +++++.. .....+.+-...+++.|... +.+++-.++..+..|+...++ .|.++.
T Consensus 120 elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~- 198 (343)
T d2bnxa1 120 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM- 198 (343)
T ss_dssp HHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH-
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHH-
Confidence 99999984100 0001101 12234556677888888765 789999999999999976553 455665
Q ss_pred hCCcHHHHHHHHHH
Q 016423 336 FCGLDTALERLRQQ 349 (390)
Q Consensus 336 ~~gL~~~L~~Lr~~ 349 (390)
.+|+.+.++.|+.-
T Consensus 199 ~~Gl~~il~~l~~~ 212 (343)
T d2bnxa1 199 RLGLHQVLQELREI 212 (343)
T ss_dssp HTTHHHHHHHHTTC
T ss_pred HCChHHHHHHHHcc
Confidence 78999999888754
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.37 Score=39.61 Aligned_cols=98 Identities=16% Similarity=0.085 Sum_probs=72.2
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcC
Q 016423 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELG 204 (390)
Q Consensus 126 ~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g 204 (390)
...|...+-+..+.++.......+-..+ |.. -|.+.++.++-.|..+|-++++| .+.++..+....
T Consensus 16 ~~~dw~~ileicD~In~~~~~~k~a~ra---i~k----------rl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~ 82 (151)
T d1juqa_ 16 RQEDWEYIIGFCDQINKELEGPQIAVRL---LAH----------KIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFR 82 (151)
T ss_dssp SSCCHHHHHHHHHHHHHSTTHHHHHHHH---HHH----------HHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred CCcCHHHHHHHHHHHhcCCccHHHHHHH---HHH----------HHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHH
Confidence 4456777777777777544333333322 221 34788999999999999999999 488899998889
Q ss_pred cHHHHHHhhcCC------CHHHHHHHHHHHHHHhhCCc
Q 016423 205 ALSKLMKMVKSS------FVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 205 ~l~~Ll~LL~s~------~~~vr~kAL~ALSsLiR~~~ 236 (390)
.+..|+++++.. +..|+.|.+.-|-+-...+|
T Consensus 83 Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~ 120 (151)
T d1juqa_ 83 FLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 120 (151)
T ss_dssp HHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHcc
Confidence 999999999742 45789999988888766654
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=89.58 E-value=3.7 Score=37.39 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc----cccCCC----CChHHHHHHHHH
Q 016423 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA----NGQLNH----PDTDIRKISAWI 185 (390)
Q Consensus 114 ~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnA----n~lL~s----~~~~vR~~Aa~v 185 (390)
|+|+-+++-..|.+.-...|+ +.+.+...+..+....|-.+-...++-... ..++.+ .++.++..+.-.
T Consensus 74 r~~~lDal~~~GT~~a~~~i~---~~I~~~~ls~~ea~~~l~~l~~~~~Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La 150 (336)
T d1lsha1 74 RRWILDAVPAMATSEALLFLK---RTLASEQLTSAEATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLG 150 (336)
T ss_dssp HHHHHHHHHHHCSHHHHHHHH---HHHHTTCSCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH---HHHHcCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCcccccchhHHHHHHHH
Confidence 567778887776543334444 445566677666666666655444321111 134443 456677777777
Q ss_pred HHHHhhC
Q 016423 186 LGKASQN 192 (390)
Q Consensus 186 Lgta~QN 192 (390)
+|+++.+
T Consensus 151 ~gslv~~ 157 (336)
T d1lsha1 151 YGSLVFR 157 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.89 E-value=0.52 Score=38.25 Aligned_cols=108 Identities=8% Similarity=0.092 Sum_probs=77.0
Q ss_pred HHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCC
Q 016423 206 LSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 284 (390)
Q Consensus 206 l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~ 284 (390)
|..+|.-..++.. +.--.++..|+-+|+..+.+... .+..|..=|++. ++..+..|+.+|-.++. +.+
T Consensus 2 le~liekAT~~~~~~~dw~~il~icD~I~~~~~~~k~-----a~ral~krl~~~--n~~~~l~aL~LLe~~vk----NcG 70 (143)
T d1mhqa_ 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTH-----APWLLAHKIQSP--QEKEALYALTVLEMCMN----HCG 70 (143)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSC
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCCCHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcC
Confidence 3445555544431 22346677788888776554322 334566667776 57789999999999986 456
Q ss_pred CCCchhhhhcCchHHHHHhhcC------CChhHHHHHHHHHHHHHh
Q 016423 285 KVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 285 ~~~~~~l~~~g~v~~Lv~lL~~------~d~~v~EkAL~aL~~L~~ 324 (390)
+.+...+.+..|+..++.++.. .+..|+++++..+...+.
T Consensus 71 ~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~ 116 (143)
T d1mhqa_ 71 EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (143)
T ss_dssp HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 7777888889999999999863 478899999998888775
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.34 E-value=9 Score=34.76 Aligned_cols=131 Identities=13% Similarity=0.003 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhC--Cccc----hHHH------
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN--NLAG----QEMF------ 242 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~--~~~a----~~~f------ 242 (390)
+..+.-....||.++..+.+..+..+-..+++..|...+.++...++.-|+--|+.+|-- ++.+ ..+|
T Consensus 69 d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~ 148 (343)
T d2bnxa1 69 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 148 (343)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence 356777899999888555554455444458899999999988888888888888887732 1222 2222
Q ss_pred HHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCC------CchhhhhcCchHHHHHhhcCCChhH
Q 016423 243 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV------EPPLFRDRFFLKSVVDLTASADLDL 311 (390)
Q Consensus 243 ~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~------~~~~l~~~g~v~~Lv~lL~~~d~~v 311 (390)
.+.+=+..++..|.+. .+..++.-++.+|..|+. +.++ .+..|...|+.+.+-.+=...+.++
T Consensus 149 ~e~~RF~~lv~~l~~~-~~~ey~~a~m~lIN~li~-----~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L 217 (343)
T d2bnxa1 149 DEVERFQPLLDGLKSG-TSIALKVGCLQLINALIT-----PAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 217 (343)
T ss_dssp HTSCTTHHHHHHTSTT-SCHHHHHHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred cCCCcHHHHHHHHhcc-ccHHHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHCChHHHHHHHHccCChHH
Confidence 1223478888888865 356789999999999995 3333 3556778898877666544444433
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.29 E-value=1.3 Score=35.96 Aligned_cols=109 Identities=10% Similarity=0.124 Sum_probs=79.3
Q ss_pred cHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 205 ALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
.+..++.-..++.. +.--.++-.|+-+|+..+.+... .+..|..=|++. ++.++..|+.+|-.++. +.
T Consensus 8 ~~e~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~-----a~r~l~krl~~~--~~~~~l~aL~LLe~~vk----NC 76 (145)
T d1ujka_ 8 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPL-----ATRLLAHKIQSP--QEWEAIQALTVLETCMK----SC 76 (145)
T ss_dssp SHHHHHHHHTCTTCSSCCHHHHHHHHHHHTSSTTHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHT----SC
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HH
Confidence 45556665655431 22346777899999887654333 345577777776 67789999999988885 45
Q ss_pred CCCCchhhhhcCchHHHHHhhcC------CChhHHHHHHHHHHHHHh
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~~------~d~~v~EkAL~aL~~L~~ 324 (390)
++.+...+.+.+|+..|+.+++. .+..|+++++..|..-..
T Consensus 77 G~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~ 123 (145)
T d1ujka_ 77 GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 123 (145)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence 67777888999999999999963 477899999988877654
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=84.81 E-value=0.82 Score=37.00 Aligned_cols=108 Identities=8% Similarity=0.049 Sum_probs=76.5
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCC
Q 016423 206 LSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 284 (390)
Q Consensus 206 l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~ 284 (390)
+..+|.-..++. .+.--.++-.|+-+|+..+.+... .+..|..-|+++ ++.++..|+.+|-.++. +.+
T Consensus 6 ~~~~iekAT~~~~~~~dw~~il~icD~I~~~~~~~k~-----a~ral~krl~~~--n~~v~l~aL~LLd~~vk----NcG 74 (145)
T d1dvpa1 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKN-----AFAAIKKKMNSP--NPHSSCYSLLVLESIVK----NCG 74 (145)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSH
T ss_pred HHHHHHHHcCcCCCCCCHHHHHHHHHHHhCCCccHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----ccc
Confidence 344444444443 122346677889999887654332 245677778876 67789999999999986 345
Q ss_pred CCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHh
Q 016423 285 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 285 ~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~ 324 (390)
+.+...+.+.+++..+..++++. +..++++++..+.....
T Consensus 75 ~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (145)
T d1dvpa1 75 APVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (145)
T ss_dssp HHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 55666677788899998888664 78999999988888765
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.66 E-value=14 Score=33.47 Aligned_cols=148 Identities=15% Similarity=0.125 Sum_probs=114.0
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC---cHHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLM 250 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g---Gl~~ 250 (390)
+++++--.+-.+|-.|+.+. ..-..++....+..+.+.+..++=++..-|...+-.++..|+.....|...| -+..
T Consensus 126 e~~eiAl~~G~mLREcik~e-~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~ 204 (330)
T d1upka_ 126 ESPEIALNCGIMLRECIRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSE 204 (330)
T ss_dssp GSTTTHHHHHHHHHHHHTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred CCcchhhhhhHHHHHHHhhH-HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHH
Confidence 45666666777777776664 4556677788899999999888878888999999998888887777887766 3455
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC-chhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
...+|.++ +--.|+.++-||+.|+.. ..+... ...+.+..-++.++.+|++....+|-.|-+...-++..+.
T Consensus 205 ~~~LL~s~--NYVtrRqSlKLLgelLld---r~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpn 277 (330)
T d1upka_ 205 YEKLLHSE--NYVTKRQSLKLLGELLLD---RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 277 (330)
T ss_dssp HHHHTTCS--SHHHHHHHHHHHHHHHHS---GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhcCC--chHHHHHHHHHHHHHHhh---hhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCC
Confidence 66788876 455899999999999952 222222 2345567889999999999999999999999999998653
|
| >d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Tom1 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.27 E-value=3.3 Score=33.57 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|=+......|...+-+..+.++.....+.+-..+|-. ++.++.++.++-.|..+|-++++| .+
T Consensus 16 ~vekAT~~~l~~~dw~~il~icD~In~~~~~~k~a~ral~k------------rL~~~~n~~v~l~aL~LLe~~vkNCG~ 83 (153)
T d1elka_ 16 RIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKK------------RIVGNKNFHEVMLALTVLETCVKNCGH 83 (153)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHH------------HHTTCCCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHcCCCCCcccHHHHHHHHHHHhCCCcCHHHHHHHHHH------------HHccCCCHHHHHHHHHHHHHHHHHccH
Confidence 34444443334456777777777777654444443333311 233567899999999999999999 58
Q ss_pred HHHHHHHhcCcHHHH-HHhhcCC---CHHHHHHHHHHHHHHh
Q 016423 195 LVQKQVLELGALSKL-MKMVKSS---FVEEAVKALYTVSSLI 232 (390)
Q Consensus 195 ~~Q~~~le~g~l~~L-l~LL~s~---~~~vr~kAL~ALSsLi 232 (390)
..+..+...+.+..| +..+... +..|+.|++.-|-+..
T Consensus 84 ~fh~evas~~Fl~~ll~~~~~~~~~~~~~Vk~kil~li~~W~ 125 (153)
T d1elka_ 84 RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 125 (153)
T ss_dssp HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 899999998888875 4444432 2468888877766653
|