Citrus Sinensis ID: 016425

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
Protein Sequence
MGLSVKPEPGSESESSLLLGNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHHHHEEcccccccccEEHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEEHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccHHHHHHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHcccccccccccccccHHHEEEEEEEHcHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEEEEEEEEEcHHHHHcccHHHcHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mglsvkpepgsesesslllgnsitvhqkpppdtfHLAYIIYFTLGLgfllpwnaFITAVDYFsylypeasVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGligaagelpDRYMQALVAGTAGSVGIVVMVICIVFYNvahrlpvikyhedLKIQAVNeekeekgsltgsMWRSAVWHIVGRVKWYGFGILLIYIVTLsifpgyiteDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFplflgclhgpkffrteiPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI
Flexible Loop (DISEMBL)
mglsvkpepgseseSSLLLGNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNeekeekgsltgsmWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI
Low Complexity Region (SEG)
MGLSVKpepgsesesslllgNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINvglglfvvallvvpvmdavYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVtlltcllgltngyltSVLMILAPKVVQLQHAETagivivlflvlglaagSIVAWFWVI
Disordered region (IsUnstruct)
*******************************DTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVN********LTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWV*
Disordered Region (DISOPRED)
********************************TFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVN************MWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI
Disordered Region (DISEMBL)
****************LLLGNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNE*********GSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI
Disordered Region (DISPRO)
**************************QKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQA***************WRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLSVKPEPGSESESSLLLGNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	390	2.2.26 [Sep-21-2011]
Q8VXY7	450	Equilibrative nucleotide	yes	no	0.992	0.86	0.672	1e-150
Q84XI3	389	Equilibrative nucleotide	no	no	0.917	0.920	0.428	5e-89
Q9M0Y3	418	Equilibrative nucleotide	no	no	0.912	0.851	0.266	1e-34
Q944N8	418	Equilibrative nucleotide	no	no	0.925	0.863	0.275	1e-31
Q944P0	417	Equilibrative nucleotide	no	no	0.894	0.836	0.281	4e-30
Q9SR64	417	Equilibrative nucleotide	no	no	0.889	0.832	0.270	1e-29
Q9M0Y2	418	Equilibrative nucleotide	no	no	0.907	0.846	0.269	1e-29
Q99P65	475	Equilibrative nucleoside	yes	no	0.956	0.785	0.257	7e-27
Q99808	456	Equilibrative nucleoside	yes	no	0.928	0.793	0.256	7e-27
Q9M0Y1	419	Equilibrative nucleotide	no	no	0.915	0.852	0.250	2e-26

>sp|Q8VXY7|ENT1_ARATH Equilibrative nucleotide transporter 1 OS=Arabidopsis thaliana GN=ENT1 PE=1 SV=1

 Score =  531 bits (1367), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 284/422 (67%), Positives = 331/422 (78%), Gaps = 35/422 (8%)

Query: 2   GLSVKPEPGSESESSLLLGNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDY 61
           G+    E G E+  SLLL       +K P D++H AYIIYFTLG+GFLLPWNAFITAVDY
Sbjct: 31  GIVTDSEAGPET--SLLLNPHEGSTKKAPSDSYHFAYIIYFTLGVGFLLPWNAFITAVDY 88

Query: 62  FSYLYPEASVDRIFAVAYMLVGLFCL-VIIVFYAHKSDAWVRINVGLGLFVVALLVVPVM 120
           FSYLYP  +VDRIFAV YMLV L CL VI+VFYAHKS A  RIN+GL LFV+ALLVVPV+
Sbjct: 89  FSYLYPSTAVDRIFAVIYMLVALVCLFVIVVFYAHKSLASFRINLGLLLFVIALLVVPVL 148

Query: 121 DAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS-- 178
           D VY+KG+VGLY GF VT  AVALSGL DAL+QGGLIG AGE+P+RYMQA+VAGTAGS  
Sbjct: 149 DLVYVKGQVGLYAGFDVTSAAVALSGLGDALMQGGLIGVAGEMPERYMQAVVAGTAGSGV 208

Query: 179 -----------------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQ 209
                                        VGIVVMVIC VFYNVAH+LPVIK+HE+ K +
Sbjct: 209 LVSLLRILTKAVYPQDPDGLRKSANLYFAVGIVVMVICAVFYNVAHKLPVIKFHEERKNE 268

Query: 210 A-VNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEIL 268
             + E+ EEKGSLTG  WR+ +W IV +VK +GFGI+L+Y+VTLSIFPGYITEDVHSE+L
Sbjct: 269 ELIREKSEEKGSLTGLAWRTTLWDIVTKVKSHGFGIVLLYMVTLSIFPGYITEDVHSELL 328

Query: 269 KDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRT 328
            DWY I+LIA YNVFDLVGK LTA+++LE+EK+A+GG  ARLLF+PLF GCLHGP F RT
Sbjct: 329 TDWYPILLIAAYNVFDLVGKCLTAVFMLEDEKIAVGGSIARLLFYPLFWGCLHGPMFLRT 388

Query: 329 EIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFW 388
           EIPVT+LTCLLGLTNGYLTSVLMILAPK V L+H+ETAGIV V+FLV+GLA+GS++AWFW
Sbjct: 389 EIPVTILTCLLGLTNGYLTSVLMILAPKSVPLRHSETAGIVTVMFLVVGLASGSVIAWFW 448

Query: 389 VI 390
           VI
Sbjct: 449 VI 450

Nucleoside transporter involved in adenosine transport and required for nucleotide metabolism which influences growth and pollen germination. Has high affinity for adenosine when expressed in a heterologous system (yeast).
Arabidopsis thaliana (taxid: 3702)

>sp|Q84XI3|ENT8_ARATH Equilibrative nucleotide transporter 8 OS=Arabidopsis thaliana GN=ETN8 PE=2 SV=1

 Score =  328 bits (841), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 173/404 (42%), Positives = 248/404 (61%), Gaps = 46/404 (11%)

Query: 18  LLGNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAV 77
           ++   + V +    D + +AY+I+F LG G L+PWNA ITAVDYF YLYP+  V++ F V
Sbjct: 1   MVDEKVIVDEVETRDAYRVAYVIHFLLGAGSLIPWNALITAVDYFGYLYPDKHVEKTFTV 60

Query: 78  AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTV 137
           AYM   +  LV+++ +  +    VR+N+G  +F++A+++ P++D V+ KG  G    + +
Sbjct: 61  AYMSCSVLVLVLMMTWNTRMSYRVRMNLGFSMFIIAMMISPLIDWVW-KGEKGENVSYML 119

Query: 138 TVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS------------------- 178
            VG+V L GLAD +V G LIG+AG+LP +YMQA+ AGTA S                   
Sbjct: 120 MVGSVVLCGLADGVVGGSLIGSAGKLPRQYMQAIFAGTASSGIIISLLRIATKASLPQTP 179

Query: 179 ------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMW 226
                       V   +++ C +  NV H+LPV++ H       +   +    +LT    
Sbjct: 180 QGMRTSAHSYFIVSSTILLCCFISCNVLHKLPVMQQH-------LKFHQPLHSTLT---- 228

Query: 227 RSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLV 286
              +W +  ++KW   G+L+IY VTLSIFPG+I E++ S++L+ WY I+LI  YN+ D V
Sbjct: 229 ---IWMVGRKIKWPASGMLIIYSVTLSIFPGFIAENLKSQLLQSWYPILLITVYNISDFV 285

Query: 287 GKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYL 346
           GKSLTA+YL ++ K A   C  RLLF+PLF  CL GPK+ RTE+PV +LT +LGLTNGYL
Sbjct: 286 GKSLTALYLWQSIKSATWACIVRLLFYPLFSACLRGPKWLRTEVPVVVLTFMLGLTNGYL 345

Query: 347 TSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI 390
           TSVLMI+APK V    AE A I +V+FL LGL  GS++ W W+I
Sbjct: 346 TSVLMIMAPKTVHASEAELAAIFMVVFLGLGLVCGSVIGWLWLI 389

May be involved in nucleoside transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0Y3|ENT3_ARATH Equilibrative nucleotide transporter 3 OS=Arabidopsis thaliana GN=ENT3 PE=1 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 193/417 (46%), Gaps = 61/417 (14%)

Query: 26  HQKPPPDTFHLAY---IIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLV 82
           ++  PP+     Y   ++   LG+G L+ WN+ +T  DY+  ++P+    R+  + Y   
Sbjct: 5   YENQPPEKLQGKYQAMVVCCILGIGSLVSWNSMLTIADYYYKVFPDYHPSRVLTLVYQPF 64

Query: 83  GLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMD-AVYIKGRVGLYDGFTVTVGA 141
            L  ++I+ ++  K +   R  +G  LF ++  ++ V+D A   +G +G Y G    V +
Sbjct: 65  ALGTILILAYHESKINTRKRNLIGYILFTISTFLLIVLDLATKGRGGIGPYIGLCAVVAS 124

Query: 142 VALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS----------------------- 178
               GLADA VQGG+IG    +    +Q+ + G A S                       
Sbjct: 125 F---GLADATVQGGMIGDLSLMCPELVQSFMGGLAVSGALTSALRLITKAAFEKTNDGPR 181

Query: 179 --------VGIVVMVICIVFYN-VAHRLPVIKYHE-------------DLKIQAVNEEKE 216
                   +   + ++C+  Y  V  +LP++KY+              DL    +  + +
Sbjct: 182 KGAMMFLAISTCIELLCVFLYAYVFPKLPIVKYYRRKAASEGSKTVSADLAAAGIQNQSD 241

Query: 217 EKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIIL 276
                + +   S    ++  +  Y   + LIY+ TLSIFPG++ E+     L DWY ++L
Sbjct: 242 LTDDDSKNQRLSNKELLIQNID-YAVNLFLIYVCTLSIFPGFLYENTGQHGLGDWYALVL 300

Query: 277 IAGYNVFDLVGK--SLTAIYLLENEKVAIGGCFARLLFFPLF-LGCLHGPKFFRTEIPVT 333
           +A YN +DLVG+   L     +EN K+      +R L  P F     +G + +     + 
Sbjct: 301 VAMYNCWDLVGRYTPLVKWLKIENRKLITIAVLSRYLLIPAFYFTAKYGDQGW-----MI 355

Query: 334 LLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI 390
           +L  +LGLTNG+LT  +M +APK  +       G ++V+FL+ G+ AG  + W W+I
Sbjct: 356 MLISVLGLTNGHLTVCIMTIAPKGYKGPEQNALGNLLVIFLLGGIFAGVALDWLWLI 412

Nucleoside transporter that functions as a pyrimidine nucleoside carrier in all organs. Has high affinity for adenosine and uridine when expressed in a heterologous system (yeast). Mediates proton-dependent adenosine or uridine transport in Xenopus oocytes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q944N8|ENT6_ARATH Equilibrative nucleotide transporter 6 OS=Arabidopsis thaliana GN=ENT6 PE=1 SV=1

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 191/418 (45%), Gaps = 57/418 (13%)

Query: 22  SITVHQKPPP-DTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYM 80
            I  HQ P      + A I+Y  LG G L+ WN+ +T  DY+  ++P+    R+  + Y 
Sbjct: 3   DIYEHQVPEKLRGKYQAMIVYCILGFGSLISWNSMLTTADYYYKVFPDYHPSRVLTLVYQ 62

Query: 81  LVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVG 140
                 +VI+ ++  K+    R  +G  L+ ++  ++ V+D +  KGR G +  +T    
Sbjct: 63  PFAFGAIVILAYHESKTSTRKRNLIGYILYTISTFLLIVLD-LATKGRGG-FGPYTGLCA 120

Query: 141 AVALSGLADALVQGGLIGAAG----ELPDRYMQAL-VAGT-------------------- 175
            VA  GLADA VQGG+ G       EL   YM  + VAG                     
Sbjct: 121 VVAAFGLADATVQGGMFGDLSLMCPELVQSYMGGMAVAGALTSALRLITKAAFEKSNNGL 180

Query: 176 -AGSVGIVVMVICI------VFYNVAHRLPVIKYHE-------------DLKIQAVNEEK 215
             G++  + +  CI      ++  V  +LP++ Y+              DL    +  + 
Sbjct: 181 RKGAMMFLAISTCIELLSVMLYAYVLPKLPIVMYYRRKAASQGSKTVSADLAAAGIQNQS 240

Query: 216 EEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGII 275
           +     + +   S    +   +  +   + LIY+ TLSIFPG++ E+     L  WY ++
Sbjct: 241 DLSDDDSKNQRLSKKELLFQNID-HAVNLFLIYVCTLSIFPGFLYENTGQHGLGAWYALV 299

Query: 276 LIAGYNVFDLVGKSLTAIYLL--ENEKVAIGGCFARLLFFPLF-LGCLHGPKFFRTEIPV 332
           L+A YN +DLVG+    +  L  EN K+      +R L  P F     +G + +     +
Sbjct: 300 LVAMYNCWDLVGRYTPLVKWLNIENRKLITIAVLSRYLLIPAFYFTAKYGDQGW-----M 354

Query: 333 TLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI 390
            +L  +LGLTNG+LT  +M +APK  +       G ++V+FL+ G+ AG  + W W+I
Sbjct: 355 IMLVSVLGLTNGHLTVCIMTIAPKGYKGPEQNALGNLLVIFLLGGIFAGVALDWLWLI 412

Nucleoside tranpsorter that can mediate uptake of adenosine, uridine, guanosine or cytidine when expressed in a heterologous system (yeast).

Arabidopsis thaliana (taxid: 3702)

>sp|Q944P0|ENT7_ARATH Equilibrative nucleotide transporter 7 OS=Arabidopsis thaliana GN=ENT7 PE=1 SV=1

 Score =  132 bits (333), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 184/405 (45%), Gaps = 56/405 (13%)

Query: 35  HLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYA 94
           ++A ++   LG+G L+ WNA +T  DY+  L+P+    R+  + Y LV    ++ +    
Sbjct: 15  NVARLVCCFLGVGSLVAWNAMLTITDYYYQLFPKYHPSRVLTIVYQLVANVFIITLATKE 74

Query: 95  HKSDAWVRINVGLGLFVVALLVVPVMD-AVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153
            K +  +R   G  L+      + ++D A +  G V  Y    +    VAL GLADA VQ
Sbjct: 75  AKLNTRLRNIFGYSLYTAGTFCLIILDLASHGSGSVVAY---VLLCLIVALFGLADAFVQ 131

Query: 154 GGLIGAAGELPDRYMQALVAG--TAGSVGIVVMVI------------------------- 186
           G ++G    +   ++QA +AG   AG++  V+ +I                         
Sbjct: 132 GAMVGDLSFMSPDFIQAFMAGLGIAGALTSVLRLITKAIFDNSPDGLRKGALLFIGIATL 191

Query: 187 ----CIVFYN-VAHRLPVIKYHE-------------DLKIQAVNEEKEEKGSLTGSMWRS 228
               C+  Y  V  +LP++KY+              DL    + E+ E+   +  S  + 
Sbjct: 192 IELACVFLYTLVFAKLPIVKYYRAKAGKEGAKTVSADLAAAGLQEQAEQVHQMDESKIQK 251

Query: 229 AVWHIVGRVKW-YGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVG 287
                + R     G  + LIY+VTLSIFPG++ E+     L DWY  +L+A YN +D + 
Sbjct: 252 LTKKQLLRENIDLGINLSLIYVVTLSIFPGFLYENTGEHRLGDWYAPVLVAMYNGWDAIS 311

Query: 288 KSLTAIYLL--ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGY 345
           + + +I  L  E+ K       ARLL  P F    +    +  +  +  LT  LGL+NGY
Sbjct: 312 RFIPSIKPLAMESRKWITVCVVARLLLVPAF----YFTAKYADQGWMLFLTSFLGLSNGY 367

Query: 346 LTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI 390
           LT  +   APK      A   G ++ +FL+ G+ AG  + W W+I
Sbjct: 368 LTVCIFSTAPKGYNGPEANALGNLMCVFLLGGIFAGVCLGWLWLI 412

Nucleoside tranpsorter that can mediate uptake of adenosine, uridine, guanosine or cytidine when expressed in a heterologous system (yeast).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR64|ENT2_ARATH Equilibrative nucleotide transporter 2 OS=Arabidopsis thaliana GN=ENT2 PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 194/429 (45%), Gaps = 82/429 (19%)

Query: 23  ITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLV 82
           + V   P    + LA  + + LG+G LL WN+ +T VDY++YL+P     RI  + Y   
Sbjct: 6   LAVTTNPKGKNYALA--VCWLLGVGCLLAWNSMLTIVDYYAYLFPWYHPSRILTIIYQSF 63

Query: 83  GLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMD-AVYIKGRVGLYDGFTVTVGA 141
            +  L ++V    + +   R   G  LF +  L V V++ A   +G +G + G  V   A
Sbjct: 64  SIGALSVLVHKEARLNTRRRNLFGYSLFSLGSLAVLVLNLATSGRGGIGSFIGVCVISAA 123

Query: 142 VALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS----VGIVVMV------------ 185
               GLADA V GG+IG    +   ++Q+ +AG A S     G+ +++            
Sbjct: 124 F---GLADAHVYGGMIGDLSMMTPEFLQSFLAGLAASGALTSGLRLVIKAAFKNSRDGLR 180

Query: 186 ---------------ICIVFYN-VAHRLPVIKYHE------------------DLKIQAV 211
                          +C++ Y  V  R+PV+KY+                    +++Q +
Sbjct: 181 KGATLFFAMSASFELVCVLLYAYVFPRIPVVKYYRAKAIIQGSRTVWADLAAGGIQVQPI 240

Query: 212 NEEKE--------EKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDV 263
            +++E         KG L       AV             + L+Y++T SIFPG+++ED 
Sbjct: 241 TQDEEALRYDHRLNKGDLMLLYSDLAV------------TLFLVYLLTFSIFPGFLSEDT 288

Query: 264 HSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL--ENEKVAIGGCFARLLFFPLFLGCLH 321
               L DWY ++LIA +NV DLVG+ +  +  L  ++ K  +     RLL  P F    +
Sbjct: 289 GKYSLGDWYALVLIAVFNVSDLVGRYVPMVKKLKMKSRKCLLITSLGRLLLIPAF----N 344

Query: 322 GPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAG 381
               + ++  +  L  +LGL+NGYLT  ++  AP  +        G ++VL++  G+ AG
Sbjct: 345 ITGIYGSQGWMIFLMSVLGLSNGYLTVCVITSAPYDLLAPEQNALGNLLVLYICGGMFAG 404

Query: 382 SIVAWFWVI 390
               W W++
Sbjct: 405 VACDWLWLV 413

May be involved in nucleoside transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0Y2|ENT4_ARATH Equilibrative nucleotide transporter 4 OS=Arabidopsis thaliana GN=ENT4 PE=1 SV=1

 Score =  130 bits (328), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 192/419 (45%), Gaps = 65/419 (15%)

Query: 26  HQKPPPDTFHLAY---IIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLV 82
           ++   P+     Y   ++   LG+G L  WN+ +T  DY+  ++P+    R+F + Y  +
Sbjct: 5   YENHAPENLQGKYQAMVVCCILGIGSLFSWNSMLTIADYYYQVFPDYHPSRVFTLIYQPI 64

Query: 83  GLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAV 142
            L  ++I+ +   K     RI  G  LF ++  ++ V+D +  KG  G+   + V    V
Sbjct: 65  ALGTIMILAYRESKISTRKRILTGYILFTISTFLLIVLD-LTTKGHGGI-GHYIVLCTIV 122

Query: 143 ALSGLADALVQGGLIGAAGELPDRYMQALVAGT--AGSVGIVVMVI-------------- 186
           A  GLADA V+GGL+G    +    +Q+ +AG+  AG++  V+ +I              
Sbjct: 123 ASFGLADATVKGGLVGDLSLMCPELIQSYMAGSGMAGALTSVLRLITKAAFEKSNNSLRK 182

Query: 187 ---------------CIVFYN-VAHRLPVIKYHE-------------DLK---IQAVNEE 214
                          C++ Y  V  +LP++KY+              DL    IQ +++ 
Sbjct: 183 GAMIFLAISTFIELLCVILYAYVFPKLPIVKYYRRKAASEGSKTVVADLAAAGIQNLSDL 242

Query: 215 KEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGI 274
            ++       M R     ++ +   +   + LIY++TLSIFPG++ E+     L DWY +
Sbjct: 243 SDDDSK--NQMLRKK--ELLLQNIDHAVNLFLIYVLTLSIFPGFLYENTGQHGLGDWYAL 298

Query: 275 ILIAGYNVFDLVGK--SLTAIYLLENEKVAIGGCFARLLFFPLF-LGCLHGPKFFRTEIP 331
           IL+A YN +DL G+   L     LEN K        R    P F     +G K +     
Sbjct: 299 ILVATYNFWDLFGRYAPLVKWLKLENRKALTIAVLTRYFLVPAFYFTAKYGDKGW----- 353

Query: 332 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI 390
           + +L  +LGLT G+LT  +M +AP   +       G ++V+F++ G   G  + W W+I
Sbjct: 354 MIMLVSILGLTTGHLTVCIMTIAPNGYKGPEKNALGNLLVVFILGGAVVGISLGWLWLI 412

Nucleoside tranpsorter that can mediate uptake of adenosine, uridine, guanosine or cytidine when expressed in a heterologous system (yeast).

Arabidopsis thaliana (taxid: 3702)

>sp|Q99P65|S29A3_MOUSE Equilibrative nucleoside transporter 3 OS=Mus musculus GN=Slc29a3 PE=1 SV=1

 Score =  122 bits (305), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 199/455 (43%), Gaps = 82/455 (18%)

Query: 7   PEPGSESESSLLLGNSITVHQ---KPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFS 63
           P    E++   LLG  +       + P D F+ AYII+F LG+G LLPWN F+TA +Y++
Sbjct: 20  PSNHQEADQEALLGKLLDYPAPGLQRPEDRFNGAYIIFFCLGIGGLLPWNFFVTAKEYWA 79

Query: 64  YLYPEAS----------------VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRI---- 103
           Y     S                 +   AVA  +  L  LV      ++    VR+    
Sbjct: 80  YKLRNCSSPASGEDPEDMDILNYFESYLAVASTVPSLLFLVANFLLVNRVQVHVRVLASL 139

Query: 104 NVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGEL 163
           +V L +FVV +++V V  + + +G       F++T+  +A+   +  +    + G  G  
Sbjct: 140 SVSLAIFVVMIVLVKVDTSSWTRGF------FSLTIACMAIISSSSTIFNSSVYGLTGSF 193

Query: 164 PDRYMQALVAGTA--GSVGIVVMVI-------------------------CIVFYNVAHR 196
           P R  QAL++G A  G+V  V +++                         C+  Y +  +
Sbjct: 194 PMRNAQALISGGAMGGTVSAVALLVDLAASSDVRDSTLAFFLMAAVFLGLCMGLYLLLSQ 253

Query: 197 LPVIKYH----EDLKI-QAVNEEKEEKGSLTGSMWRSAVWH------IVGRVKWYGFGIL 245
           L   +Y+      +++    +   ++  S +     S V H      I+ +    GF  +
Sbjct: 254 LEYARYYMRPVAPVRVFSGEDNPSQDAPSASSVAPASRVMHTPPLGPILKKTASLGFCAV 313

Query: 246 LIYIVTLSIFPGYIT--EDVHSEILKDWYGIILIAG-----YNVFDLVGKSLTAIYLLE- 297
            +Y VT  I P   T  + +H      W     +       +N  DL G+ +TA   +  
Sbjct: 314 SLYFVTAFIIPAISTNIQSMHKGTGSPWTSKFFVPLTVFLLFNFADLCGRQVTAWIQVPG 373

Query: 298 -NEKVAIGGCFARLLFFPLFLGCLHGPK------FFRTEIPVTLLTCLLGLTNGYLTSVL 350
              K+  G   +R    PLFL C + P+       F+++I   L TCLLGL+NGYL++++
Sbjct: 374 PRSKLLPGLVVSRFCLVPLFLLCNYQPRSHLTKVLFQSDIYPVLFTCLLGLSNGYLSTLV 433

Query: 351 MILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385
           +I  PK+V  + AE   +V++ ++ +GL  GS  A
Sbjct: 434 LIYGPKIVPRELAEATSVVMLFYMSVGLMLGSACA 468

Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). Mediates transport of adenine, adenosine and uridine.

Mus musculus (taxid: 10090)

>sp|Q99808|S29A1_HUMAN Equilibrative nucleoside transporter 1 OS=Homo sapiens GN=SLC29A1 PE=1 SV=3

 Score =  122 bits (305), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 198/453 (43%), Gaps = 91/453 (20%)

Query: 24  TVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYF----------SYLYPEASVDR 73
           T HQ  P D +   ++I+F LGLG LLPWN F+TA  YF          S +  E S D 
Sbjct: 3   TSHQ--PQDRYKAVWLIFFMLGLGTLLPWNFFMTATQYFTNRLDMSQNVSLVTAELSKDA 60

Query: 74  ------------------IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALL 115
                             IF     L  +  L++  +        +  +V +   +VA+L
Sbjct: 61  QASAAPAAPLPERNSLSAIFNNVMTLCAMLPLLLFTYLNSFLHQRIPQSVRILGSLVAIL 120

Query: 116 VVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGT 175
           +V ++ A+ +K ++     F +T+  + L     A++QG L G AG LP  Y   +++G 
Sbjct: 121 LVFLITAILVKVQLDALPFFVITMIKIVLINSFGAILQGSLFGLAGLLPASYTAPIMSGQ 180

Query: 176 A-----GSVGIV----------------------VMVICIVFYNVAHRLPVIKYHEDLKI 208
                  SV ++                      V+++ I+ Y    RL   +Y++ LK+
Sbjct: 181 GLAGFFASVAMICAIASGSELSESAFGYFITACAVIILTIICYLGLPRLEFYRYYQQLKL 240

Query: 209 QAVNEE----------------KEEKG-SLTGSMWRS---AVWHIVGRVKWYGFGILLIY 248
           +   E+                KEE G S++ S   +   ++  I+  +    F +  I+
Sbjct: 241 EGPGEQETKLDLISKGEEPRAGKEESGVSVSNSQPTNESHSIKAILKNISVLAFSVCFIF 300

Query: 249 IVTLSIFPGYITEDVHSEIL------KDWYGIILIAGYNVFDLVGKSLTAIYLL--ENEK 300
            +T+ +FP  +T +V S I       + +  +     +N+FD +G+SLTA+++   ++ +
Sbjct: 301 TITIGMFPA-VTVEVKSSIAGSSTWERYFIPVSCFLTFNIFDWLGRSLTAVFMWPGKDSR 359

Query: 301 VAIGGCFARLLFFPLFLGCLHGPK-----FFRTEIPVTLLTCLLGLTNGYLTSVLMILAP 355
                  ARL+F PL L C   P+      F  +            +NGYL S+ M   P
Sbjct: 360 WLPSLVLARLVFVPLLLLCNIKPRRYLTVVFEHDAWFIFFMAAFAFSNGYLASLCMCFGP 419

Query: 356 KVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFW 388
           K V+   AETAG ++  FL LGLA G++ ++ +
Sbjct: 420 KKVKPAEAETAGAIMAFFLCLGLALGAVFSFLF 452

Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). It is sensitive (ES) to low concentrations of the inhibitor nitrobenzylmercaptopurine riboside (NBMPR) and is sodium-independent. It has a higher affinity for adenosine. Inhibited by dipyridamole and dilazep (anticancer chemotherapeutics drugs).

Homo sapiens (taxid: 9606)

>sp|Q9M0Y1|ENT5_ARATH Equilibrative nucleotide transporter 5 OS=Arabidopsis thaliana GN=ENT5 PE=2 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 178/415 (42%), Gaps = 58/415 (13%)

Query: 27  QKPPPDTFHLAY---IIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVG 83
           +   P+  H  Y   ++   LG+G L+ WN+ ++  DY+  ++P+    R+    Y    
Sbjct: 6   ENQAPENLHGKYQAMVVCCILGIGSLVSWNSLLSVGDYYYQVFPDYHPSRVLTFVYQPFS 65

Query: 84  LFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMD-AVYIKGRVGLYDGFTVTVGAV 142
           +  +VI  +   K +   R  +G  +F  ++ ++ ++D A    G +G Y      VG+ 
Sbjct: 66  IGTIVIFAYNESKINTRKRNLIGYIVFTTSIFLLIILDLATKGHGGIGPYIVLCAIVGSF 125

Query: 143 ALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS------------------------ 178
              G ADA V+GG+IG    +    +Q+ VAG A +                        
Sbjct: 126 ---GFADASVRGGMIGDLSLMCPELIQSFVAGLAVAGALTSAFRLITKAAFEKTHDGLRK 182

Query: 179 -------VGIVVMVICIVFYN-VAHRLPVIKYHE-------------DLKIQAVNEEKEE 217
                  +  +V  +C++ Y  V  +LP++KY+              DL    +  +   
Sbjct: 183 GAMIFLAISTLVEFLCVLLYAYVFPKLPIVKYYRSKAASEGSKTVYADLAAAGIQNQSVL 242

Query: 218 KGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILI 277
                    R     ++     Y   + LIY++TLSI PG++ E+     L  WY ++LI
Sbjct: 243 TADDVSKDKRLNNKELLLENVDYVVNLFLIYVLTLSILPGFLYENTGQHGLGSWYALVLI 302

Query: 278 AGYNVFDLVGKSLTAIYLL--ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLL 335
           A YN +DLVG+ +  +  L  EN K        R L  P F    +    +  +  + LL
Sbjct: 303 AMYNWWDLVGRYIPMVKWLNVENRKGLTVAVLTRFLLVPAF----YFTAKYGDQGWMILL 358

Query: 336 TCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI 390
             +LGLTNG+LT  ++  AP+          G ++VLF++ G   G  + W W+I
Sbjct: 359 VSILGLTNGHLTVCILAKAPRGYTGPEKNALGNLLVLFILWGAFVGCALGWLWLI 413

May be involved in nucleoside transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
118480977	432	unknown [Populus trichocarpa]	0.992	0.895	0.737	1e-169
255568752	479	nucleoside transporter, putative [Ricinu	0.982	0.799	0.718	1e-169
225424683	417	PREDICTED: equilibrative nucleoside tran	0.987	0.923	0.713	1e-168
255568754	425	nucleoside transporter, putative [Ricinu	0.938	0.861	0.758	1e-168
356542879	412	PREDICTED: equilibrative nucleoside tran	0.966	0.915	0.685	1e-158
334683127	415	equilibrative nucleoside transporter 1 [	0.984	0.925	0.660	1e-154
449458882	418	PREDICTED: equilibrative nucleotide tran	0.971	0.906	0.660	1e-154
449515700	418	PREDICTED: equilibrative nucleotide tran	0.971	0.906	0.660	1e-154
356531627	414	PREDICTED: equilibrative nucleoside tran	0.966	0.910	0.684	1e-152
30698033	450	equilibrative nucleotide transporter 1 [	0.992	0.86	0.672	1e-148

>gi|118480977|gb|ABK92442.1| unknown [Populus trichocarpa]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 321/435 (73%), Positives = 357/435 (82%), Gaps = 48/435 (11%)

Query: 1   MGLSVKPEPGSESESSLLL-------------GNSITVHQKPPPDTFHLAYIIYFTLGLG 47
           MGL+   EP  ++ESSLLL              NS    QK P DTFHLAYIIYFTLGLG
Sbjct: 1   MGLT-STEP--DTESSLLLPTTAATTTTTTTTTNSTISQQKIPKDTFHLAYIIYFTLGLG 57

Query: 48  FLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIV-FYAHKSDAWVRINVG 106
           FLLPWNAFITAVDYFSY+YP+ SVDRIF+VAYM++GL CLV+I+ FYAHKSDA++RIN+G
Sbjct: 58  FLLPWNAFITAVDYFSYIYPDVSVDRIFSVAYMVMGLACLVVIILFYAHKSDAYLRINLG 117

Query: 107 LGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDR 166
           LGLF+VALLVVPVMDAVYIKGRVGLYDGF VTVGA+ALSG+ADALVQGGLIGAAGELP+R
Sbjct: 118 LGLFIVALLVVPVMDAVYIKGRVGLYDGFYVTVGALALSGMADALVQGGLIGAAGELPER 177

Query: 167 YMQALVAGTAGS-------------------------------VGIVVMVICIVFYNVAH 195
           YMQA+VAGTA S                               VGIVVM IC+VFYN+AH
Sbjct: 178 YMQAVVAGTAASGVLVSLLRILTKAVYTQDSHGLRKSANLYFAVGIVVMAICLVFYNMAH 237

Query: 196 RLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIF 255
           RLP++KY+ DLKIQAVNE+KEEKGSLTG+ WRS +W IV  V+WYG GI++IY+VTLSIF
Sbjct: 238 RLPIMKYYADLKIQAVNEDKEEKGSLTGARWRSTLWEIVCSVQWYGIGIVIIYVVTLSIF 297

Query: 256 PGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPL 315
           PGYITEDVHSEILKDWY IILI GYNVFDLVGKSLTA+YLL+N K+AIGGCF RLLF+PL
Sbjct: 298 PGYITEDVHSEILKDWYSIILITGYNVFDLVGKSLTAVYLLKNAKIAIGGCFVRLLFYPL 357

Query: 316 FLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLV 375
           F GCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI APKVV L+ AETAGIVIVL+LV
Sbjct: 358 FFGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIHAPKVVPLRQAETAGIVIVLYLV 417

Query: 376 LGLAAGSIVAWFWVI 390
            GLAAGSIVAWFWVI
Sbjct: 418 AGLAAGSIVAWFWVI 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568752|ref|XP_002525347.1| nucleoside transporter, putative [Ricinus communis] gi|223535310|gb|EEF36985.1| nucleoside transporter, putative [Ricinus communis]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 301/419 (71%), Positives = 343/419 (81%), Gaps = 36/419 (8%)

Query: 2   GLSVKPEPGSESESSLLLGNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDY 61
           G S   +P  + ESS LL    TV +  P D+F+L YIIYFTLGLG+LLPWNAFITAVDY
Sbjct: 65  GKSANNDP--DCESSFLLS---TVSENIPKDSFNLVYIIYFTLGLGYLLPWNAFITAVDY 119

Query: 62  FSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMD 121
           FS +YP  SVDR+FAVAYMLV L CL++IVFYAHKSDA+ RINVGL LFV+ALL+VPVMD
Sbjct: 120 FSAIYPGVSVDRVFAVAYMLVSLCCLLVIVFYAHKSDAYFRINVGLVLFVLALLIVPVMD 179

Query: 122 AVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS--- 178
           AVYIKGRVGLY+GF V+VGA++L+ LAD L QGGLIG AGELP+RYMQA+VAGTAGS   
Sbjct: 180 AVYIKGRVGLYNGFDVSVGAISLAALADGLAQGGLIGGAGELPERYMQAVVAGTAGSGVL 239

Query: 179 ----------------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQA 210
                                       VGIVVM++CI+F+NVAHRLPVIKY+ DLK+QA
Sbjct: 240 VSFLRIITKAVYTQDEHGLRKSANLYFSVGIVVMILCIIFHNVAHRLPVIKYYRDLKVQA 299

Query: 211 VNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKD 270
            NEEK+EKGSL+G+ WRS VW IVG VKWYG GILLIYIVTL+IFPGYITEDVHSE LKD
Sbjct: 300 ANEEKKEKGSLSGAQWRSTVWEIVGSVKWYGIGILLIYIVTLAIFPGYITEDVHSETLKD 359

Query: 271 WYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEI 330
           WY I+L+ GYN+FDLVGKSLTA+YLL+NEKVAI  C AR LFFPLFLGCLHGPKFFRTE+
Sbjct: 360 WYPILLVTGYNLFDLVGKSLTAVYLLDNEKVAISCCLARFLFFPLFLGCLHGPKFFRTEL 419

Query: 331 PVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWV 389
           PVT+LT LLGLTNGYLTSVLM+LAPKVV +QH+ETAGIVIVLFLV+GLAAGSIV+WFWV
Sbjct: 420 PVTILTSLLGLTNGYLTSVLMVLAPKVVPIQHSETAGIVIVLFLVIGLAAGSIVSWFWV 478

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424683|ref|XP_002263287.1| PREDICTED: equilibrative nucleoside transporter 4-like [Vitis vinifera]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 301/422 (71%), Positives = 342/422 (81%), Gaps = 37/422 (8%)

Query: 1   MGLSVKPEPGSESESSLLLGNSITVHQ-KPPPDTFHLAYIIYFTLGLGFLLPWNAFITAV 59
           MG+S     G ++ESS LL  + T    K P D++H AYIIYFTLG GFLLPWNAFITAV
Sbjct: 1   MGIS-----GEDTESSRLLTTTSTGSPCKIPKDSYHFAYIIYFTLGAGFLLPWNAFITAV 55

Query: 60  DYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPV 119
           DYFSYLYP+ SVDRIFAV YM+V LFCL++I+ Y HKSDA+VRIN+G+ +F+V LLVVP+
Sbjct: 56  DYFSYLYPDVSVDRIFAVVYMVVALFCLLLIIAYTHKSDAFVRINIGMAIFIVGLLVVPI 115

Query: 120 MDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAG-- 177
           MD VYIKG+ GLY GF VTV AV LSGL DALVQGG+IG+AGE+P+RYMQA+VAGTA   
Sbjct: 116 MDVVYIKGQTGLYSGFYVTVAAVGLSGLGDALVQGGVIGSAGEMPERYMQAVVAGTAASG 175

Query: 178 -----------------------------SVGIVVMVICIVFYNVAHRLPVIKYHEDLKI 208
                                        SV IVVM +CIVFYNVAHRLPVIKY+ +LK 
Sbjct: 176 VLVSFLRIFTKAVFSQDTQGLRRSAILYFSVSIVVMAVCIVFYNVAHRLPVIKYYRNLKA 235

Query: 209 QAVNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEIL 268
           QAVNEEKEEKGSLT ++W + +W I+GRVKWYGFGILLIY+VTLSIFPGYITEDVHS++L
Sbjct: 236 QAVNEEKEEKGSLTAAVWGATLWDILGRVKWYGFGILLIYVVTLSIFPGYITEDVHSKVL 295

Query: 269 KDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRT 328
           KDWY I+LIAGYNVFDLVGKSLTA+YLLEN K+AI  C ARLLF+PLFL CLHGP+FFRT
Sbjct: 296 KDWYPILLIAGYNVFDLVGKSLTAVYLLENAKIAISACIARLLFYPLFLVCLHGPEFFRT 355

Query: 329 EIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFW 388
           EIPVT+LTCLLGLTNGYLTSVLMILAPK VQLQHAETAGIVIVLFLV+GLA GSIVAWFW
Sbjct: 356 EIPVTVLTCLLGLTNGYLTSVLMILAPKAVQLQHAETAGIVIVLFLVVGLAIGSIVAWFW 415

Query: 389 VI 390
           VI
Sbjct: 416 VI 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568754|ref|XP_002525348.1| nucleoside transporter, putative [Ricinus communis] gi|223535311|gb|EEF36986.1| nucleoside transporter, putative [Ricinus communis]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 302/398 (75%), Positives = 334/398 (83%), Gaps = 32/398 (8%)

Query: 24  TVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVG 83
           T+ +  P DTF+ AYIIYFTLG+GFLLPWNA+ITAVDYFS +YP  SVDRIFAVAYMLVG
Sbjct: 29  TLSKNVPKDTFNFAYIIYFTLGVGFLLPWNAYITAVDYFSAIYPGVSVDRIFAVAYMLVG 88

Query: 84  LFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVA 143
           L CL++++FY+  SDA++RINVGL  FVVALLVVPVMDAVYIKGRVGLY GF V+VGA+A
Sbjct: 89  LCCLLVVIFYSRVSDAYIRINVGLLFFVVALLVVPVMDAVYIKGRVGLYAGFDVSVGAIA 148

Query: 144 LSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS------------------------- 178
           LSGLAD LVQGGLIG+AGELP+RYMQA+VAGTAGS                         
Sbjct: 149 LSGLADGLVQGGLIGSAGELPERYMQAIVAGTAGSGVLVSLLRIITKAVYTQDEHGLRKS 208

Query: 179 ------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWH 232
                 VGIVVM +C+VFYNV HRLPVIKY+ DLK QAVNEEKE KGSL+G+ WRS +W 
Sbjct: 209 ANLYFAVGIVVMAVCVVFYNVVHRLPVIKYYTDLKTQAVNEEKE-KGSLSGAQWRSTLWE 267

Query: 233 IVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTA 292
           IV  VKWYG GI+LIYIVTL+IFPGYITEDVHSEILKDWY ++LI GYNVFD+VGKSLTA
Sbjct: 268 IVRSVKWYGIGIVLIYIVTLAIFPGYITEDVHSEILKDWYSVLLITGYNVFDMVGKSLTA 327

Query: 293 IYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 352
           +YLLEN KVAIGGCF RLLFFPLFLGCLHGP+FFRTEIPVT+LTCLLGLTNGYLTSVLMI
Sbjct: 328 VYLLENAKVAIGGCFVRLLFFPLFLGCLHGPEFFRTEIPVTILTCLLGLTNGYLTSVLMI 387

Query: 353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI 390
           LAPKVV LQHAETAGIVIVLFLVLGLA GSIVAWFWVI
Sbjct: 388 LAPKVVPLQHAETAGIVIVLFLVLGLAGGSIVAWFWVI 425

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542879|ref|XP_003539892.1| PREDICTED: equilibrative nucleoside transporter 4-like [Glycine max]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 281/410 (68%), Positives = 334/410 (81%), Gaps = 33/410 (8%)

Query: 13  SESSLLL-GNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASV 71
           +ES LLL   S     + P D + +AYI+YFTLGLG+LLPWNAFITAVDYFSYLYP+ASV
Sbjct: 4   TESCLLLPSGSGRNKNRVPEDKWDMAYIVYFTLGLGYLLPWNAFITAVDYFSYLYPDASV 63

Query: 72  DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGL 131
           DRIFAV YML+GL  + +I+FY+HKS+A+VRINVGL LFVV+LL++P++DA Y+KGRVGL
Sbjct: 64  DRIFAVVYMLIGLVGISLIIFYSHKSNAYVRINVGLALFVVSLLIIPLLDAFYLKGRVGL 123

Query: 132 YDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS------------- 178
           Y GF VT  AV LS +ADALVQG ++G AGELP+RYMQA+VAGTAGS             
Sbjct: 124 YSGFYVTAAAVGLSAVADALVQGSIVGCAGELPERYMQAVVAGTAGSGVLVSALRIFTKA 183

Query: 179 ------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGS 220
                             V IV++ +C+VFYN+ H+LPV+KY+++LK++AV    E+ G 
Sbjct: 184 VYPQDASGLQKSANLYFSVSIVIVFVCMVFYNMVHKLPVMKYYKELKVEAVTAN-EDNGP 242

Query: 221 LTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGY 280
           LTG++WRS VW+IVGR+KWYGFGI+LIYIVTL+IFPGYITEDVHS+ILKDWY I+LIAGY
Sbjct: 243 LTGAVWRSTVWNIVGRIKWYGFGIVLIYIVTLAIFPGYITEDVHSQILKDWYPILLIAGY 302

Query: 281 NVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLG 340
           NVFDLVGK LTA+YLL+N KVAIGGC ARLLFFPLFLGCLHGPKFFRTEIPVT+LTCLLG
Sbjct: 303 NVFDLVGKCLTAVYLLQNAKVAIGGCIARLLFFPLFLGCLHGPKFFRTEIPVTILTCLLG 362

Query: 341 LTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI 390
           LTNGYLTSVLMIL PK+V+LQHAETAGIV VLFLV GLAAGS++AW WVI
Sbjct: 363 LTNGYLTSVLMILIPKIVKLQHAETAGIVSVLFLVFGLAAGSVIAWIWVI 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334683127|emb|CBX87929.1| equilibrative nucleoside transporter 1 [Solanum tuberosum]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/421 (66%), Positives = 322/421 (76%), Gaps = 37/421 (8%)

Query: 1   MGLSVKPEPGSESESSLLLGNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVD 60
           MG +     GSES S L   N      K P DTFH+AYIIYFTLG G+LLPWNAFITAVD
Sbjct: 1   MGATTVNGGGSESTSLLTPSNP-----KIPKDTFHIAYIIYFTLGAGYLLPWNAFITAVD 55

Query: 61  YFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVM 120
           YF+YLYP+  VDRIFA+ YM+VGL CLV+IV +++K+ A+VRINVG+ LFVVAL+ VP+M
Sbjct: 56  YFTYLYPDVMVDRIFAIVYMVVGLICLVLIVAFSNKTSAFVRINVGMFLFVVALVTVPLM 115

Query: 121 DAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS-- 178
           D  Y+ GRVG+Y GF VTVG V + G ADALVQGG++GAAGELPDRYMQA  AGTA S  
Sbjct: 116 DVFYVDGRVGVYAGFGVTVGLVGICGFADALVQGGVVGAAGELPDRYMQATFAGTAASGV 175

Query: 179 -----------------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQ 209
                                          I VM++CIVFYNVAHRLP+IKY+ DLK Q
Sbjct: 176 LVSLLRILTKAVYPQDAHGLRKSANLYFIFSIAVMILCIVFYNVAHRLPIIKYYNDLKTQ 235

Query: 210 AVNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILK 269
           AVNEEKE+KG LT  +WRS +  IVG VKWYGFGI+ +Y+VTLSIFPGYITEDVHS++LK
Sbjct: 236 AVNEEKEDKGDLTPELWRSTL-DIVGTVKWYGFGIISLYVVTLSIFPGYITEDVHSQLLK 294

Query: 270 DWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTE 329
           DWY I+LI GYNVFDLVGKSLT +  L+N KVAIG CFARL F PLF GCLHGPKFFRTE
Sbjct: 295 DWYPILLITGYNVFDLVGKSLTPVLFLDNAKVAIGACFARLFFLPLFYGCLHGPKFFRTE 354

Query: 330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWV 389
           +PVT+LTCLLGLTNGYLTS+LMIL PK VQLQHAE AG ++VLFLV+GLA GSIV+WFW+
Sbjct: 355 LPVTILTCLLGLTNGYLTSLLMILGPKTVQLQHAEIAGTLLVLFLVMGLAIGSIVSWFWI 414

Query: 390 I 390
           I
Sbjct: 415 I 415

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458882|ref|XP_004147175.1| PREDICTED: equilibrative nucleotide transporter 1-like [Cucumis sativus]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 272/412 (66%), Positives = 326/412 (79%), Gaps = 33/412 (8%)

Query: 12  ESES-SLLLGNSIT-VHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEA 69
           +SES SLL   +++ +  K P D+FH AYIIYFTLG G+LLPWNAF+TA+DYFSYLYP+A
Sbjct: 7   DSESISLLATTTVSPIPNKVPKDSFHFAYIIYFTLGFGYLLPWNAFVTAIDYFSYLYPDA 66

Query: 70  SVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV 129
           +VDRIFAV YM V   CLV IVFY+HKSDA  RIN+GL LFV+ LL VP+MD VYI GRV
Sbjct: 67  NVDRIFAVVYMGVSFICLVFIVFYSHKSDAHFRINLGLVLFVLTLLAVPIMDVVYIHGRV 126

Query: 130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS----------- 178
           GLY+G  VT+G V L G AD +VQGG+IG+AGELP+RY+QA++AGTAGS           
Sbjct: 127 GLYEGLYVTIGFVVLCGAADGVVQGGVIGSAGELPERYIQAVLAGTAGSGVLVSVLRIIT 186

Query: 179 --------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEK 218
                               V IVVMVICI+FYN+  +LPV+KY++DLK+QA+N E+EEK
Sbjct: 187 KSIYPQDASGLRESARLYFVVSIVVMVICIIFYNIVEKLPVVKYYKDLKVQAMNMEEEEK 246

Query: 219 GSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIA 278
           G LTG++WRS +W I+  VKWYGFGI+LIY+VTLSIFPG+ITEDVHS ILKDWY I+LI 
Sbjct: 247 GPLTGAVWRSTLWEIIESVKWYGFGIVLIYLVTLSIFPGFITEDVHSSILKDWYPILLIT 306

Query: 279 GYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCL 338
           GYNVFDLVGK+LTA+Y+++N K+AI GC  RLLFFPLF  CLHGP  FRTEIPVT LTCL
Sbjct: 307 GYNVFDLVGKTLTAVYVIQNPKIAIVGCAVRLLFFPLFFICLHGPPVFRTEIPVTFLTCL 366

Query: 339 LGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI 390
           +GLTNGYLTSVLM+LAPKVVQ+QHAETAG+V+VLFLV GLA GS+V WFW+I
Sbjct: 367 MGLTNGYLTSVLMMLAPKVVQIQHAETAGVVMVLFLVTGLALGSVVTWFWII 418

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515700|ref|XP_004164886.1| PREDICTED: equilibrative nucleotide transporter 1-like [Cucumis sativus]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 272/412 (66%), Positives = 326/412 (79%), Gaps = 33/412 (8%)

Query: 12  ESES-SLLLGNSIT-VHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEA 69
           +SES SLL   +++ +  K P D+FH AYIIYFTLG G+LLPWNAF+TA+DYFSYLYP+A
Sbjct: 7   DSESISLLATTTVSPIPNKVPKDSFHFAYIIYFTLGFGYLLPWNAFVTAIDYFSYLYPDA 66

Query: 70  SVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV 129
           +VDRIFAV YM V   CLV IVFY+HKSDA  RIN+GL LFV+ LL VP+MD VYI GRV
Sbjct: 67  NVDRIFAVVYMGVSFICLVFIVFYSHKSDAHFRINLGLVLFVLTLLAVPIMDVVYIHGRV 126

Query: 130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS----------- 178
           GLY+G  VT+G V L G ADA+VQGG+IG+AGELP+RY+QA++AGTAGS           
Sbjct: 127 GLYEGLYVTIGFVVLCGAADAVVQGGVIGSAGELPERYIQAVLAGTAGSGVLVSVLRIIT 186

Query: 179 --------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEK 218
                               V IVVMVICI+FYN+  +LPV+KY++DLK+QA+N E+EEK
Sbjct: 187 KSIYPQDASGLRESARLYFVVSIVVMVICIIFYNIVEKLPVVKYYKDLKVQAMNMEEEEK 246

Query: 219 GSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIA 278
           G LTG++WRS +W I+  VKWYG GI+LIY+VTLSIFPG+ITEDVHS ILKDWY I+LI 
Sbjct: 247 GPLTGAVWRSTLWEIIESVKWYGVGIVLIYLVTLSIFPGFITEDVHSSILKDWYPILLIT 306

Query: 279 GYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCL 338
           GYNVFDLVGK+LTA+Y+++N K+AI GC  RLLFFPLF  CLHGP  FRTEIPVT LTCL
Sbjct: 307 GYNVFDLVGKTLTAVYVIQNPKIAIVGCAVRLLFFPLFFICLHGPPVFRTEIPVTFLTCL 366

Query: 339 LGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI 390
           +GLTNGYLTSVLM+LAPKVVQ+QHAETAG+V+VLFLV GLA GS+V WFW+I
Sbjct: 367 MGLTNGYLTSVLMMLAPKVVQIQHAETAGVVMVLFLVTGLALGSVVTWFWII 418

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531627|ref|XP_003534378.1| PREDICTED: equilibrative nucleoside transporter 4-like [Glycine max]

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 282/412 (68%), Positives = 333/412 (80%), Gaps = 35/412 (8%)

Query: 13  SESSLLL---GNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEA 69
           +ESSLLL     +     K P D ++LAYI+YFTLGLG+LLPWNAFITAVDYFS+LYP+A
Sbjct: 4   TESSLLLPSVSGTNKNKNKVPEDKWYLAYIVYFTLGLGYLLPWNAFITAVDYFSFLYPDA 63

Query: 70  SVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV 129
           SVDRIFAV YM+VGL  + +I+ Y+HKSDA+VRINVGL LFVV+LLVVP++DA YIKGRV
Sbjct: 64  SVDRIFAVVYMIVGLVGISLIILYSHKSDAYVRINVGLALFVVSLLVVPLLDAFYIKGRV 123

Query: 130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS----------- 178
           G Y GF VT GAV LSG+ADALVQG ++G+AGELPDRYMQA++AGTA S           
Sbjct: 124 GFYSGFYVTAGAVGLSGVADALVQGSIVGSAGELPDRYMQAVIAGTAASGVLVSALRIFT 183

Query: 179 --------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEK 218
                               V IV++ +C+VFYN+ H+LPV+KY+++LK++AV    E+ 
Sbjct: 184 KAVYPQDASGLQKSANLYFSVSIVIVFLCMVFYNMVHKLPVMKYYKELKVEAVTAN-EDN 242

Query: 219 GSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIA 278
           G LTG +WRS VW+IV R++WYGFGI+LIY+VTL+IFPGYITEDVHS+ILKDWY I+LIA
Sbjct: 243 GPLTGPVWRSTVWNIVRRIRWYGFGIVLIYVVTLAIFPGYITEDVHSQILKDWYPILLIA 302

Query: 279 GYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCL 338
           GYNVFDLVGK LTA+YLL+N KVAIGGC ARLLFFPLFLGCLHGPKFFRTEIPVT+LTCL
Sbjct: 303 GYNVFDLVGKCLTAVYLLQNAKVAIGGCIARLLFFPLFLGCLHGPKFFRTEIPVTILTCL 362

Query: 339 LGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWVI 390
           LGLTNGYLTS LMIL PK+V LQHAETAGIV VLFLV GLAAGS++AWFWVI
Sbjct: 363 LGLTNGYLTSALMILIPKIVMLQHAETAGIVSVLFLVFGLAAGSVIAWFWVI 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698033|ref|NP_564987.2| equilibrative nucleotide transporter 1 [Arabidopsis thaliana] gi|75161382|sp|Q8VXY7.1|ENT1_ARATH RecName: Full=Equilibrative nucleotide transporter 1; Short=AtENT1; AltName: Full=Nucleoside transporter ENT1 gi|18377783|gb|AAL67041.1| unknown protein [Arabidopsis thaliana] gi|27754746|gb|AAO22816.1| unknown protein [Arabidopsis thaliana] gi|332196925|gb|AEE35046.1| equilibrative nucleotide transporter 1 [Arabidopsis thaliana]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/422 (67%), Positives = 331/422 (78%), Gaps = 35/422 (8%)

Query: 2   GLSVKPEPGSESESSLLLGNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDY 61
           G+    E G E+  SLLL       +K P D++H AYIIYFTLG+GFLLPWNAFITAVDY
Sbjct: 31  GIVTDSEAGPET--SLLLNPHEGSTKKAPSDSYHFAYIIYFTLGVGFLLPWNAFITAVDY 88

Query: 62  FSYLYPEASVDRIFAVAYMLVGLFCL-VIIVFYAHKSDAWVRINVGLGLFVVALLVVPVM 120
           FSYLYP  +VDRIFAV YMLV L CL VI+VFYAHKS A  RIN+GL LFV+ALLVVPV+
Sbjct: 89  FSYLYPSTAVDRIFAVIYMLVALVCLFVIVVFYAHKSLASFRINLGLLLFVIALLVVPVL 148

Query: 121 DAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS-- 178
           D VY+KG+VGLY GF VT  AVALSGL DAL+QGGLIG AGE+P+RYMQA+VAGTAGS  
Sbjct: 149 DLVYVKGQVGLYAGFDVTSAAVALSGLGDALMQGGLIGVAGEMPERYMQAVVAGTAGSGV 208

Query: 179 -----------------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQ 209
                                        VGIVVMVIC VFYNVAH+LPVIK+HE+ K +
Sbjct: 209 LVSLLRILTKAVYPQDPDGLRKSANLYFAVGIVVMVICAVFYNVAHKLPVIKFHEERKNE 268

Query: 210 A-VNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEIL 268
             + E+ EEKGSLTG  WR+ +W IV +VK +GFGI+L+Y+VTLSIFPGYITEDVHSE+L
Sbjct: 269 ELIREKSEEKGSLTGLAWRTTLWDIVTKVKSHGFGIVLLYMVTLSIFPGYITEDVHSELL 328

Query: 269 KDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRT 328
            DWY I+LIA YNVFDLVGK LTA+++LE+EK+A+GG  ARLLF+PLF GCLHGP F RT
Sbjct: 329 TDWYPILLIAAYNVFDLVGKCLTAVFMLEDEKIAVGGSIARLLFYPLFWGCLHGPMFLRT 388

Query: 329 EIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFW 388
           EIPVT+LTCLLGLTNGYLTSVLMILAPK V L+H+ETAGIV V+FLV+GLA+GS++AWFW
Sbjct: 389 EIPVTILTCLLGLTNGYLTSVLMILAPKSVPLRHSETAGIVTVMFLVVGLASGSVIAWFW 448

Query: 389 VI 390
           VI
Sbjct: 449 VI 450

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
TAIR|locus:2016119	450	ENT1 "equilibrative nucleotide	0.546	0.473	0.616	2.8e-122
TAIR|locus:2196070	389	AT1G02630 [Arabidopsis thalian	0.507	0.508	0.396	1.1e-68
TAIR|locus:2115733	418	FUR1 "FUDR RESISTANT 1" [Arabi	0.353	0.330	0.270	4.3e-21
TAIR|locus:2100068	417	AT3G09990 [Arabidopsis thalian	0.389	0.364	0.294	1e-20
TAIR|locus:2115718	418	ENT6 "AT4G05110" [Arabidopsis	0.353	0.330	0.285	2.6e-20
UNIPROTKB|F1NNK0	514	SLC29A4 "Uncharacterized prote	0.392	0.297	0.291	3.8e-20
TAIR|locus:2115753	418	ENT4 "AT4G05130" [Arabidopsis	0.384	0.358	0.267	6.7e-20
ZFIN|ZDB-GENE-070112-1932	518	slc29a4 "solute carrier family	0.225	0.169	0.336	1.2e-18
UNIPROTKB|E1BPT2	525	SLC29A4 "Uncharacterized prote	0.225	0.167	0.358	7.5e-18
RGD|1310545	475	Slc29a4 "solute carrier family	0.402	0.330	0.246	9e-18

TAIR|locus:2016119 ENT1 "equilibrative nucleotide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 2.8e-122, Sum P(2) = 2.8e-122
 Identities = 132/214 (61%), Positives = 159/214 (74%)

Query:   178 SVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQA-VNEEKEEKGSLTGSMWRSAVWHIVGR 236
             +VGIVVMVIC VFYNVAH+LPVIK+HE+ K +  + E+ EEKGSLTG  WR+ +W IV +
Sbjct:   237 AVGIVVMVICAVFYNVAHKLPVIKFHEERKNEELIREKSEEKGSLTGLAWRTTLWDIVTK 296

Query:   237 VKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL 296
             VK +GFGI+L+Y+VTLSIFPGYITEDVHSE+L DWY I+LIA YNVFDLVGK LTA+++L
Sbjct:   297 VKSHGFGIVLLYMVTLSIFPGYITEDVHSELLTDWYPILLIAAYNVFDLVGKCLTAVFML 356

Query:   297 ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVXXXXXXXXXXXXXXXSVLMILAPK 356
             E+EK+A+GG  ARLLF+PLF GCLHGP F RTEIPV               SVLMILAPK
Sbjct:   357 EDEKIAVGGSIARLLFYPLFWGCLHGPMFLRTEIPVTILTCLLGLTNGYLTSVLMILAPK 416

Query:   357 VVQLQHAETXXXXXXXXXXXXXXXXSIVAWFWVI 390
              V L+H+ET                S++AWFWVI
Sbjct:   417 SVPLRHSETAGIVTVMFLVVGLASGSVIAWFWVI 450

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0010174 "nucleoside transmembrane transporter activity, against a concentration gradient" evidence=IGI

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2196070 AT1G02630 [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
 Identities = 84/212 (39%), Positives = 117/212 (55%)

Query:   179 VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVGRVK 238
             V   +++ C +  NV H+LPV++ H  LK       +    +LT       +W +  ++K
Sbjct:   192 VSSTILLCCFISCNVLHKLPVMQQH--LKFH-----QPLHSTLT-------IWMVGRKIK 237

Query:   239 WYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLEN 298
             W   G+L+IY VTLSIFPG+I E++ S++L+ WY I+LI  YN+ D VGKSLTA+YL ++
Sbjct:   238 WPASGMLIIYSVTLSIFPGFIAENLKSQLLQSWYPILLITVYNISDFVGKSLTALYLWQS 297

Query:   299 EKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVXXXXXXXXXXXXXXXSVLMILAPKVV 358
              K A   C  RLLF+PLF  CL GPK+ RTE+PV               SVLMI+APK V
Sbjct:   298 IKSATWACIVRLLFYPLFSACLRGPKWLRTEVPVVVLTFMLGLTNGYLTSVLMIMAPKTV 357

Query:   359 QLQHAETXXXXXXXXXXXXXXXXSIVAWFWVI 390
                 AE                 S++ W W+I
Sbjct:   358 HASEAELAAIFMVVFLGLGLVCGSVIGWLWLI 389

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2115733 FUR1 "FUDR RESISTANT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
 Identities = 42/155 (27%), Positives = 75/155 (48%)

Query:   178 SVGIVVMVICIVFYN-VAHRLPVIKYHE-------------DLKIQAVNEEKEEKGSLTG 223
             ++   + ++C+  Y  V  +LP++KY+              DL    +  + +     + 
Sbjct:   189 AISTCIELLCVFLYAYVFPKLPIVKYYRRKAASEGSKTVSADLAAAGIQNQSDLTDDDSK 248

Query:   224 SMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVF 283
             +   S    ++  +  Y   + LIY+ TLSIFPG++ E+     L DWY ++L+A YN +
Sbjct:   249 NQRLSNKELLIQNID-YAVNLFLIYVCTLSIFPGFLYENTGQHGLGDWYALVLVAMYNCW 307

Query:   284 DLVGKSLTAI-YL-LENEKVAIGGCFARLLFFPLF 316
             DLVG+    + +L +EN K+      +R L  P F
Sbjct:   308 DLVGRYTPLVKWLKIENRKLITIAVLSRYLLIPAF 342

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA;ISS;IMP

GO:0006810 "transport" evidence=IEA

GO:0015864 "pyrimidine nucleoside transport" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0015858 "nucleoside transport" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2100068 AT3G09990 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
 Identities = 46/156 (29%), Positives = 70/156 (44%)

Query:    23 ITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLV 82
             + V   P    + LA  + + LG+G LL WN+ +T VDY++YL+P     RI  + Y   
Sbjct:     6 LAVTTNPKGKNYALA--VCWLLGVGCLLAWNSMLTIVDYYAYLFPWYHPSRILTIIYQSF 63

Query:    83 GLFCLVIIVFYAHKSDAWVRINXXXXXXXXXXXXXXXXXXXYIKGRVGLYDGFTVTVGAV 142
              +  L ++V    + +   R N                      GR G+     V V + 
Sbjct:    64 SIGALSVLVHKEARLNTRRR-NLFGYSLFSLGSLAVLVLNLATSGRGGIGSFIGVCVISA 122

Query:   143 ALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS 178
             A  GLADA V GG+IG    +   ++Q+ +AG A S
Sbjct:   123 AF-GLADAHVYGGMIGDLSMMTPEFLQSFLAGLAAS 157

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2115718 ENT6 "AT4G05110" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
 Identities = 40/140 (28%), Positives = 62/140 (44%)

Query:    37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHK 96
             A I+Y  LG G L+ WN+ +T  DY+  ++P+    R+  + Y       +VI+ ++  K
Sbjct:    19 AMIVYCILGFGSLISWNSMLTTADYYYKVFPDYHPSRVLTLVYQPFAFGAIVILAYHESK 78

Query:    97 SDAWVRINXXXXXXXXXXXXXXXXXXXYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL 156
             +    R N                     KGR G +  +T     VA  GLADA VQGG+
Sbjct:    79 TSTRKR-NLIGYILYTISTFLLIVLDLATKGRGG-FGPYTGLCAVVAAFGLADATVQGGM 136

Query:   157 IGAAGELPDRYMQALVAGTA 176
              G    +    +Q+ + G A
Sbjct:   137 FGDLSLMCPELVQSYMGGMA 156

GO:0005337 "nucleoside transmembrane transporter activity" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0015858 "nucleoside transport" evidence=IDA

UNIPROTKB|F1NNK0 SLC29A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 3.8e-20, Sum P(3) = 3.8e-20
 Identities = 47/161 (29%), Positives = 73/161 (45%)

Query:   232 HIVGRVKW-YGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSL 290
             ++V R+ W Y   I + Y +TL +FPG +  ++H+  L +W  I+++A +N+ D VGK L
Sbjct:   331 YVVSRLIWAYMLSIAMTYFITLCLFPG-LESEIHNCTLGEWLPILIMAIFNLSDFVGKIL 389

Query:   291 TAI-YLLENEKVAIGGCFARLLFFPLFLGCLH--G-PKFFRTEIPVXXXXXXXXXXXXXX 346
              A+ Y      + +  C  R++F PLF+ C++  G P F     P               
Sbjct:   390 AALPYDWRGPFILVYSCL-RVVFIPLFIMCVYPNGQPTFGHPAWPCVFSLLMGITNGYFG 448

Query:   347 XSVLMILAPKVVQLQHAETXXXXXXXXXXXXXXXXSIVAWF 387
              SV MILA   V  +  E                 S VA+F
Sbjct:   449 -SVPMILAAGKVSPEQRELAGNTMTVSYMTGLTLGSAVAYF 488

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2115753 ENT4 "AT4G05130" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
 Identities = 41/153 (26%), Positives = 70/153 (45%)

Query:    37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHK 96
             A ++   LG+G L  WN+ +T  DY+  ++P+    R+F + Y  + L  ++I+ +   K
Sbjct:    19 AMVVCCILGIGSLFSWNSMLTIADYYYQVFPDYHPSRVFTLIYQPIALGTIMILAYRESK 78

Query:    97 SDAWVRINXXXXXXXXXXXXXXXXXXXYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL 156
                  RI                      KG  G+   + V    VA  GLADA V+GGL
Sbjct:    79 ISTRKRILTGYILFTISTFLLIVLDLT-TKGHGGI-GHYIVLCTIVASFGLADATVKGGL 136

Query:   157 IGAAGELPDRYMQALVAGTAGSVGIVVMVICIV 189
             +G    +    +Q+ +AG+ G  G +  V+ ++
Sbjct:   137 VGDLSLMCPELIQSYMAGS-GMAGALTSVLRLI 168

GO:0005337 "nucleoside transmembrane transporter activity" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0015858 "nucleoside transport" evidence=IDA

ZFIN|ZDB-GENE-070112-1932 slc29a4 "solute carrier family 29 (nucleoside transporters), member 4" [Danio rerio (taxid:7955)]

 Score = 151 (58.2 bits), Expect = 1.2e-18, Sum P(4) = 1.2e-18
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query:   232 HIVGRVKW-YGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSL 290
             ++V RV W Y   I + Y +TL +FPG +  ++ +  L +W  I+++A +N+ D VGK L
Sbjct:   338 YVVARVIWTYMLSIAVTYFITLCLFPG-LESEIKNATLGEWLPILIMAIFNISDFVGKIL 396

Query:   291 TAI-YLLENEKVAIGGCFARLLFFPLFLGCLH 321
              A+ Y     ++    C  R++F PLF+ C++
Sbjct:   397 AAVPYEWNGTRLLFFSC-VRVVFIPLFIMCVY 427

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1BPT2 SLC29A4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
 Identities = 33/92 (35%), Positives = 52/92 (56%)

Query:   232 HIVGRVKWYGF-GILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSL 290
             ++V RV W     I + Y +TL +FPG  +E  H  IL +W  I+L+A +N+ D VGK L
Sbjct:   342 YVVARVIWADMLSIAVTYFITLCLFPGLESEIRHC-ILGEWLPILLMAVFNLSDFVGKIL 400

Query:   291 TAIYL-LENEKVAIGGCFARLLFFPLFLGCLH 321
              A+ +      +    C  R++F PLF+ C++
Sbjct:   401 AALPMDWRGTHLLACSCL-RVVFIPLFILCVY 431

GO:0016021 "integral to membrane" evidence=IEA

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA

RGD|1310545 Slc29a4 "solute carrier family 29 (nucleoside transporters), member 4" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 9.0e-18, Sum P(2) = 9.0e-18
 Identities = 40/162 (24%), Positives = 70/162 (43%)

Query:    23 ITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLV 82
             + V +  P D +H  Y      G+GFLLP+N+FIT VDY  + YP  S+    ++ Y+LV
Sbjct:     7 LAVDEPVPDDRYHAIYFAMLLAGVGFLLPYNSFITDVDYLHHKYPGTSIVFDMSLTYILV 66

Query:    83 GLFCLVIIVFYAHKSDAWVRINXXXXXXXXXXXXXXXXXXXYIKGRVGLYD-GFTVTVGA 141
              L  +++      + +   RI                        ++  +D  + + + A
Sbjct:    67 ALAAVLLNNVVVERLNLHTRITTGYLLALGPLLFISIFDVWL---QLFSHDQAYAINLAA 123

Query:   142 VALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSVGIVV 183
             V        + Q    G  G LP RY Q ++ G + + G+++
Sbjct:   124 VGTVAFGCTVQQSSFYGYTGLLPKRYTQGVMTGES-TAGVMI 164

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VXY7	ENT1_ARATH	No assigned EC number	0.6729	0.9923	0.86	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	390
TIGR00939	437	TIGR00939, 2a57, Equilibrative Nucleoside Transpor	5e-84
pfam01733	305	pfam01733, Nucleoside_tran, Nucleoside transporter	1e-59

>gnl|CDD|233199 TIGR00939, 2a57, Equilibrative Nucleoside Transporter (ENT)

 Score =  262 bits (671), Expect = 5e-84
 Identities = 124/433 (28%), Positives = 189/433 (43%), Gaps = 83/433 (19%)

Query: 41  YFTLGLGFLLPWNAFITAVDYFSYLYPEA--SVDRIFAVAYM------LVGLFC-LVIIV 91
           +F LG+G LLPWNAFITA  YF   Y  A    + I + + M         L   L  ++
Sbjct: 1   FFMLGVGVLLPWNAFITAPQYFIEYYKYAQNIPEAIPSSSKMWKHFNTYYTLASQLPSLL 60

Query: 92  FYAHKSDAWVRIN--VGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLAD 149
           F +       RI   V L   +V LLVV ++  V +K +      F  T+ +V +     
Sbjct: 61  FNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGM 120

Query: 150 ALVQGGLIGAAGELPDRYMQALVAGTAGS------------------------------V 179
           AL+QG L G AG  P  Y  A+++G   +                               
Sbjct: 121 ALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGT 180

Query: 180 GIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGS--------------- 224
             VV +ICIV Y +  +LP  +Y+   K+     E E KG L                  
Sbjct: 181 PCVVQLICIVCYLLLPKLPFARYYLQKKLDKGAGEDETKGELRSKAEQNGIPHGGDQPSP 240

Query: 225 ------------------MWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSE 266
                               +++VW +  +V    F ++ ++ VTLS+FP   T    S 
Sbjct: 241 TLVLDWEKEPESPDEPQKPLKTSVWVVFTKVWLLAFSVVFVFTVTLSVFPAITTAVTSSG 300

Query: 267 --ILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAI--GGCFARLLFFPLFLGCLHG 322
             +   +Y II    +N+FD +G+SLT+ ++  +E         F R+LF PLFL C + 
Sbjct: 301 LGLSNWFYPIICFLLFNLFDWLGRSLTSKFMWPDEDSRWLPILSFLRVLFIPLFLLCNYP 360

Query: 323 -----PKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLG 377
                P FF  +    +L  L G +NGYL S+ M LAP+ V     E AG ++V+FL++G
Sbjct: 361 QRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVG 420

Query: 378 LAAGSIVAWFWVI 390
           LA G+++++ +V 
Sbjct: 421 LALGAVLSFLFVA 433

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 437

>gnl|CDD|216670 pfam01733, Nucleoside_tran, Nucleoside transporter

 Score =  194 bits (496), Expect = 1e-59
 Identities = 92/306 (30%), Positives = 140/306 (45%), Gaps = 57/306 (18%)

Query: 140 GAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS--------------------- 178
             + +    +AL+Q  L G AGE P  Y QA++ G   +                     
Sbjct: 2   IMIVVINSGNALLQNSLFGLAGEFPSTYTQAVMIGQNLAGVLVSLLMILTKASNSDLSES 61

Query: 179 ------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEE-----KEEKGS-LTGSMW 226
                   +VV+V+C +  NV  +L   KY+  LK +  NEE     +E  GS L G+  
Sbjct: 62  AFLYFGTALVVVVVCAISLNVLKKLRFYKYYWQLKERETNEELEQVDEESSGSNLNGTFD 121

Query: 227 RS---------AVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGII-- 275
            S           +  + +       ++LI+ VTLS+FP   T +V S  L  W      
Sbjct: 122 NSKPQLENVFKPFFVTLTKFPVLALSVVLIFTVTLSVFPAP-TAEVVSS-LPTWEKQYFM 179

Query: 276 ---LIAGYNVFDLVGKSLTAIYLL--ENEKVAIGGCFARLLFFPLFLGCLHGPK------ 324
                  +N+FDL+G+SL A ++   ++ +        RLLF PLFL C + P+      
Sbjct: 180 PVLCFLLFNLFDLLGRSLAAWFMWPGQDPRWLPVLSILRLLFIPLFLLCNYKPQSRALPV 239

Query: 325 FFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIV 384
           FF ++    +L  L   +NGYL+S+ M+ APK V    AETAG++ V FL+LGLA GS+ 
Sbjct: 240 FFESDWLFIILMALFAFSNGYLSSLAMMYAPKQVPPHEAETAGMITVFFLILGLALGSVF 299

Query: 385 AWFWVI 390
           ++    
Sbjct: 300 SFVIRA 305

This is a family of nucleoside transporters. In mammalian cells nucleoside transporters transport nucleoside across the plasma membrane and are essential for nucleotide synthesis via the salvage pathways for cells that lack their own de novo synthesis pathways. Also in this family is mouse and human nucleolar protein HNP36, a protein of unknown function; although it has been hypothesised to be a plasma membrane nucleoside transporter. Length = 305

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	390
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	100.0
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	100.0
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	100.0
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.94
KOG3880	409	consensus Predicted small molecule transporter inv	99.85
TIGR00895	398	2A0115 benzoate transport.	98.3
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.28
TIGR00893	399	2A0114 d-galactonate transporter.	98.2
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.15
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.1
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.09
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.03
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.01
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.97
TIGR00900	365	2A0121 H+ Antiporter protein.	97.92
PRK11663	434	regulatory protein UhpC; Provisional	97.91
PRK05122	399	major facilitator superfamily transporter; Provisi	97.9
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.85
PRK10489	417	enterobactin exporter EntS; Provisional	97.84
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.83
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.82
TIGR00891	405	2A0112 putative sialic acid transporter.	97.8
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.78
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.67
PRK12382	392	putative transporter; Provisional	97.65
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.53
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.48
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.46
PRK03545	390	putative arabinose transporter; Provisional	97.43
PRK10133	438	L-fucose transporter; Provisional	97.42
PRK09874	408	drug efflux system protein MdtG; Provisional	97.41
TIGR00898	505	2A0119 cation transport protein.	97.41
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.38
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.31
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.27
PLN00028	476	nitrate transmembrane transporter; Provisional	97.27
PRK12307	426	putative sialic acid transporter; Provisional	97.19
PRK03699	394	putative transporter; Provisional	97.14
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.12
PRK10504	471	putative transporter; Provisional	97.06
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.04
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.94
PRK10077	479	xylE D-xylose transporter XylE; Provisional	96.94
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.92
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	96.87
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	96.81
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	96.71
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.66
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.61
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	96.6
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	96.59
PRK03633	381	putative MFS family transporter protein; Provision	96.47
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.35
PRK03893	496	putative sialic acid transporter; Provisional	96.32
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.27
PRK10642	490	proline/glycine betaine transporter; Provisional	96.21
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	96.21
PRK14995	495	methyl viologen resistance protein SmvA; Provision	96.21
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	96.19
PRK15011	393	sugar efflux transporter B; Provisional	96.08
PRK11043	401	putative transporter; Provisional	96.06
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	96.05
PRK10091	382	MFS transport protein AraJ; Provisional	95.98
PRK10473	392	multidrug efflux system protein MdtL; Provisional	95.97
KOG2563	480	consensus Permease of the major facilitator superf	95.84
PRK11902	402	ampG muropeptide transporter; Reviewed	95.56
TIGR00896	355	CynX cyanate transporter. This family of proteins	95.46
KOG2533	495	consensus Permease of the major facilitator superf	95.17
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.15
PRK09705	393	cynX putative cyanate transporter; Provisional	95.09
PRK09528	420	lacY galactoside permease; Reviewed	95.08
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	95.06
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	95.04
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	94.99
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	94.76
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	94.74
PRK10054	395	putative transporter; Provisional	94.49
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	94.4
TIGR00901	356	2A0125 AmpG-related permease.	94.29
KOG4255	439	consensus Uncharacterized conserved protein [Funct	94.21
PRK11646	400	multidrug resistance protein MdtH; Provisional	94.19
PRK15403	413	multidrug efflux system protein MdtM; Provisional	94.16
PRK11195	393	lysophospholipid transporter LplT; Provisional	94.13
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	94.1
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	94.01
PRK15075	434	citrate-proton symporter; Provisional	93.9
KOG2532	466	consensus Permease of the major facilitator superf	93.69
PRK09952	438	shikimate transporter; Provisional	93.48
PF13347	428	MFS_2: MFS/sugar transport protein	93.46
PRK09584	500	tppB putative tripeptide transporter permease; Rev	93.38
PRK10207	489	dipeptide/tripeptide permease B; Provisional	93.3
PRK09848	448	glucuronide transporter; Provisional	93.23
PRK10429	473	melibiose:sodium symporter; Provisional	92.76
KOG3764	464	consensus Vesicular amine transporter [Intracellul	92.74
PRK11010	491	ampG muropeptide transporter; Validated	92.56
PRK10489	417	enterobactin exporter EntS; Provisional	92.36
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	92.23
TIGR00898	505	2A0119 cation transport protein.	91.82
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	91.7
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	90.64
PF13347	428	MFS_2: MFS/sugar transport protein	90.42
TIGR00900	365	2A0121 H+ Antiporter protein.	90.38
KOG0569	485	consensus Permease of the major facilitator superf	90.2
PRK11646	400	multidrug resistance protein MdtH; Provisional	90.16
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	89.06
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	88.66
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	88.6
PRK10213	394	nepI ribonucleoside transporter; Reviewed	88.56
TIGR00893	399	2A0114 d-galactonate transporter.	88.45
KOG2325	488	consensus Predicted transporter/transmembrane prot	88.3
TIGR00895	398	2A0115 benzoate transport.	88.29
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	88.2
PRK12382	392	putative transporter; Provisional	87.88
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	87.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	87.8
PRK05122	399	major facilitator superfamily transporter; Provisi	87.02
TIGR00891	405	2A0112 putative sialic acid transporter.	87.0
PRK09874	408	drug efflux system protein MdtG; Provisional	86.84
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	86.72
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	86.48
TIGR00805	633	oat sodium-independent organic anion transporter.	86.38
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	85.73
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	85.65
KOG0569	485	consensus Permease of the major facilitator superf	85.58
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	85.4
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	84.68
PRK11462	460	putative transporter; Provisional	84.28
PRK15403	413	multidrug efflux system protein MdtM; Provisional	83.5
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	83.45
PRK10054	395	putative transporter; Provisional	83.4
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	83.02
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	82.82
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	82.81
PRK09669	444	putative symporter YagG; Provisional	82.51
PRK10091	382	MFS transport protein AraJ; Provisional	82.33
PLN00028	476	nitrate transmembrane transporter; Provisional	82.19
PRK03633	381	putative MFS family transporter protein; Provision	82.13
PRK11663	434	regulatory protein UhpC; Provisional	82.1
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	82.01
PRK09669	444	putative symporter YagG; Provisional	81.71
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	81.51
PRK03545	390	putative arabinose transporter; Provisional	80.1

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.5e-73  Score=557.82  Aligned_cols=359  Identities=38%  Similarity=0.675  Sum_probs=309.5

Q ss_pred             CCCCCCCccchhhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccchhhhhhHH----HHHHHHHHHHHHhcCCCCcce
Q 016425           26 HQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYM----LVGLFCLVIIVFYAHKSDAWV  101 (390)
Q Consensus        26 ~~~~p~d~~~~~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~  101 (390)
                      ++.+|||+++.+|++|+++|+|+|+|||+++|+.|||+++||++++.+.|+..|+    +++++....+.+...|    .
T Consensus         8 ~~~~p~d~~~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~----~   83 (406)
T KOG1479|consen    8 DSPEPEDGYNLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR----L   83 (406)
T ss_pred             cCCCcccccccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence            4789999999999999999999999999999999999999999887666665555    4555555555555544    5


Q ss_pred             EehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHhhhHHH---
Q 016425          102 RINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS---  178 (390)
Q Consensus       102 Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~~~s---  178 (390)
                      |...+..+..+..+++++++.++.+++.|...+|+++|++++++|.++|+.|||+||++|.||++|+||+|+||++|   
T Consensus        84 ~~~~~~~l~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l  163 (406)
T KOG1479|consen   84 RTRVGYLLSLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTL  163 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHH
Confidence            55555555555555555556667677889999999999999999999999999999999999999999999999988   


Q ss_pred             ------------------------HHHHHHHHHHHHHHHHhccchhHHhhhhhhhh----hhhhhhhccCCCCcccchhH
Q 016425          179 ------------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQA----VNEEKEEKGSLTGSMWRSAV  230 (390)
Q Consensus       179 ------------------------ia~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~----~~e~~e~~~~~~~~~~~~~~  230 (390)
                                              ++++++++|+++|..+.|+|++|||++++.++    .+|+.|+|++.++++.  +.
T Consensus       164 ~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~  241 (406)
T KOG1479|consen  164 TSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAGSIGSKLAAEGIESDSSLSNEDD--SL  241 (406)
T ss_pred             HHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhcccccccccccccccccccccccc--hH
Confidence                                    88999999999999999999999998876543    1223334444433323  89


Q ss_pred             HHHHHHHHHHhHHHHHHhhhhceeccceEeeeeccCCCchhHHHHHHHH-HHhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 016425          231 WHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAG-YNVFDLVGKSLTAIYLLENEKVAIGGCFAR  309 (390)
Q Consensus       231 ~~v~k~i~~~~~~~~l~f~vTl~vFPgi~~~~~~~~~~~~w~~~~~~~~-FnvgD~iGR~~~~~~~~~~~~~l~~lsl~R  309 (390)
                      |+++||+++++++++++|+||+++|||+.++..+++..++|++.+...+ ||++|++||.++.+.+++++|.+++++++|
T Consensus       242 ~~i~~k~~~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR  321 (406)
T KOG1479|consen  242 WDIFKKIKDLAFNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLR  321 (406)
T ss_pred             HHHHHHHHHHhhchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHH
Confidence            9999999999999999999999999999876444455579999888888 999999999999999999999999999999


Q ss_pred             HHHHhhhhhcccC--CcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          310 LLFFPLFLGCLHG--PKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       310 ~ifiplf~~~~~~--p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      ++|||+|.+||+.  |.++++|+++++++.++|+||||++++.|++|||+++++|||.||++|++++..|+++|+++|++
T Consensus       322 ~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l  401 (406)
T KOG1479|consen  322 LLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV  401 (406)
T ss_pred             HHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999984  56899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhC
Q 016425          388 WVI  390 (390)
Q Consensus       388 ~~~  390 (390)
                      |++
T Consensus       402 ~~~  404 (406)
T KOG1479|consen  402 FVI  404 (406)
T ss_pred             HHH
Confidence            974

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=100.00  E-value=6.6e-68  Score=534.88  Aligned_cols=345  Identities=34%  Similarity=0.591  Sum_probs=291.9

Q ss_pred             HHHHhhhhhhHHHHhhcchhhhhcccCCCc---------------cchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehh
Q 016425           41 YFTLGLGFLLPWNAFITAVDYFSYLYPEAS---------------VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINV  105 (390)
Q Consensus        41 f~llGi~~L~pwn~~ita~dyf~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~  105 (390)
                      |+++|+|+|+|||+++||.|||+++|++++               ++++++++.++++++....+....+|+|.+.|+..
T Consensus         1 f~llG~~~L~pWN~fitA~~Yf~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~   80 (437)
T TIGR00939         1 FFMLGVGVLLPWNAFITAPQYFIEYYKYAQNIPEAIPSSSKMWKHFNTYYTLASQLPSLLFNSLNLFLIFRIPVTVRLLG   80 (437)
T ss_pred             CEEEeeeccchhHHHhhHHHHHHHHhccCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhHH
Confidence            578999999999999999999999886542               34566779999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHhhhHHH-------
Q 016425          106 GLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS-------  178 (390)
Q Consensus       106 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~~~s-------  178 (390)
                      +++++++.+++..++  +..+.  ....+|+++|+++++.|+++|+.|++.+|++|.||++|+|++|+|||+|       
T Consensus        81 ~lv~~~~~~~~~~~l--~~~~~--~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939        81 GLVILLVVVILVMVL--VKVQT--SETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHhhe--eeecC--CcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHHHHHHHHhcchhHHHHHHHH
Confidence            999887777765442  33432  2445899999999999999999999999999999999999999999988       


Q ss_pred             -----------------------HHHHHHHHHHHHHHHHhccchhHHhhhhhhh----hh------hhhhhhc------c
Q 016425          179 -----------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQ----AV------NEEKEEK------G  219 (390)
Q Consensus       179 -----------------------ia~~~~~~~~~~y~~l~~~~~~~~~~~~~~~----~~------~e~~e~~------~  219 (390)
                                             ++++++++|+++|..+.|+|++|+|.+++++    ++      .+++|++      +
T Consensus       157 ~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (437)
T TIGR00939       157 MILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLPFARYYLQKKLDKGAGEDETKGELRSKAEQNGIPHGGD  236 (437)
T ss_pred             HHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhcccccccccccccccccccccccccccc
Confidence                                   5778889999999999999999999765321    00      0001100      0


Q ss_pred             --C-------------CCC--cccchhHHHHHHHHHHHhHHHHHHhhhhceeccceEeeeeccCC-Cch-hHHHHHHHHH
Q 016425          220 --S-------------LTG--SMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEI-LKD-WYGIILIAGY  280 (390)
Q Consensus       220 --~-------------~~~--~~~~~~~~~v~k~i~~~~~~~~l~f~vTl~vFPgi~~~~~~~~~-~~~-w~~~~~~~~F  280 (390)
                        +             .++  .+.+.++++++||+|++++++|++|++|+++|||++.....++. .++ |++++++++|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~f  316 (437)
T TIGR00939       237 QPSPTLVLDWEKEPESPDEPQKPLKTSVWVVFTKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLF  316 (437)
T ss_pred             cccccccccccccccCCccchhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHH
Confidence              0             000  11357899999999999999999999999999999876433322 344 6999999999


Q ss_pred             HhhhhhhhhhhhhhhccCch--hHHHHHHHHHHHHhhhhhcccCC-----cccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          281 NVFDLVGKSLTAIYLLENEK--VAIGGCFARLLFFPLFLGCLHGP-----KFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       281 nvgD~iGR~~~~~~~~~~~~--~l~~lsl~R~ifiplf~~~~~~p-----~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      |+||++||.++.+..++++|  ++++++++|++|||+|++||++|     .+++||+++++++++||+||||++|++|++
T Consensus       317 NvgD~vGR~~~~~~~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~  396 (437)
T TIGR00939       317 NLFDWLGRSLTSKFMWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCL  396 (437)
T ss_pred             HHHHHHHhhhhheeEeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            99999999999888776554  89999999999999999999875     378999999999999999999999999999


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWV  389 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~~~  389 (390)
                      ||++++++|||.||.+|++++++|+++||++|+++.
T Consensus       397 ~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~  432 (437)
T TIGR00939       397 APRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV  432 (437)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999874

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=100.00  E-value=1.7e-53  Score=413.52  Aligned_cols=250  Identities=32%  Similarity=0.576  Sum_probs=4.0

Q ss_pred             HHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHhhhHHH---------------------------HHHHHHHHHHHHH
Q 016425          139 VGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS---------------------------VGIVVMVICIVFY  191 (390)
Q Consensus       139 l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~~~s---------------------------ia~~~~~~~~~~y  191 (390)
                      |+.+++.|+++|++|+|+||++|.||++|+|++|+|||+|                           ++++++++|+++|
T Consensus         1 m~~v~~~~~~~~~~q~s~~glas~~p~~y~~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~~~   80 (309)
T PF01733_consen    1 MISVALIGFANAVLQSSLFGLASLFPPKYTQAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCIILY   80 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEEHhhhHHHhccHHHHHhcCCHHHHHHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999999999988                           6788899999999


Q ss_pred             HHHhccchhHHhhhhhhh----hhhhh-----hhhccC-CC----Cc--c---cchhHHHHHHHHHHHhHHHHHHhhhhc
Q 016425          192 NVAHRLPVIKYHEDLKIQ----AVNEE-----KEEKGS-LT----GS--M---WRSAVWHIVGRVKWYGFGILLIYIVTL  252 (390)
Q Consensus       192 ~~l~~~~~~~~~~~~~~~----~~~e~-----~e~~~~-~~----~~--~---~~~~~~~v~k~i~~~~~~~~l~f~vTl  252 (390)
                      ..+.|+|++|+|.+++.+    +++|+     +|++++ .+    ++  +   ...++++++|++|+++++++++|++|+
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~i~~~f~vTl  160 (309)
T PF01733_consen   81 FILPRSPFYRYYLEREAKGDERETEEELSSDGEEESESRSEGTFENSKPQEENVFISFWVVLKKIWPYALSIFLVFFVTL  160 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhccChHHHHHHhhhcccchhhhhhhhhhhccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHhhee
Confidence            999999999999776521    11111     011100 00    00  0   123578899999999999999999999


Q ss_pred             eeccceEeeeeccC---CCchhH-HHHHHHHHHhhhhhhhhhhhhhhcc--CchhHHHHHHHHHHHHhhhhhcccCC---
Q 016425          253 SIFPGYITEDVHSE---ILKDWY-GIILIAGYNVFDLVGKSLTAIYLLE--NEKVAIGGCFARLLFFPLFLGCLHGP---  323 (390)
Q Consensus       253 ~vFPgi~~~~~~~~---~~~~w~-~~~~~~~FnvgD~iGR~~~~~~~~~--~~~~l~~lsl~R~ifiplf~~~~~~p---  323 (390)
                      ++||+++. ..++.   ..++|+ |++++++||+||++||.++.+.+++  ++|++++++++|++|||+|++||++|   
T Consensus       161 ~~FP~it~-~v~s~~~~~~~~~f~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~  239 (309)
T PF01733_consen  161 SVFPGITS-AVQSSNNPDWSSYFVPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPR  239 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeccceee-eeeccccCCCccHHHHHHHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            99999954 33332   123344 4789999999999999999999887  78889999999999999999999874   


Q ss_pred             ---cccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 016425          324 ---KFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWV  389 (390)
Q Consensus       324 ---~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~~~  389 (390)
                         .+++||+++++++++||+||||++|++|++||++++++|||.||.+|++++++|+++||++|+++.
T Consensus       240 ~~~~~~~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~~~  308 (309)
T PF01733_consen  240 YLPVLFNSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFLLV  308 (309)
T ss_dssp             ---------------------------HHHH--------------------------------------
T ss_pred             cCCCcccchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               379999999999999999999999999999999999999999999999999999999999999874

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.94  E-value=1.1e-26  Score=229.82  Aligned_cols=335  Identities=16%  Similarity=0.190  Sum_probs=239.8

Q ss_pred             hhHHHHHHhhhhhhHHHHhhcch-hhhhcccC--C-----C----------------c-cchhhhhhHHHHHHHHHHHHH
Q 016425           37 AYIIYFTLGLGFLLPWNAFITAV-DYFSYLYP--E-----A----------------S-VDRIFAVAYMLVGLFCLVIIV   91 (390)
Q Consensus        37 ~y~~f~llGi~~L~pwn~~ita~-dyf~~~~~--~-----~----------------~-~~~~~~~~~~~~~l~~~~~~~   91 (390)
                      +|+.|+++|++++++|-.+++|+ |--.++..  +     +                + ......++..+|.++..++++
T Consensus         1 ~~~~fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP   80 (402)
T PF02487_consen    1 NYVAFWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAP   80 (402)
T ss_pred             ChhHHHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhH
Confidence            47899999999999999999997 65552211  0     0                0 112356788899999999999


Q ss_pred             HhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHH
Q 016425           92 FYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQAL  171 (390)
Q Consensus        92 ~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~  171 (390)
                      ++.||+|++.|+.....+.++.++++...     +       ..++.++++++.|+++|+.|.+.+++++.+|+.-+++|
T Consensus        81 ~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-----~-------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~~~l~~w  148 (402)
T PF02487_consen   81 FFIHRVPYWIRILICVALSAAGMLLVAFS-----P-------SVWVRLLGVVLASLSSGLGEVTFLSLTHFYGKSSLSAW  148 (402)
T ss_pred             hhhhhccchHHHHHHHHHHHHHHhheeec-----c-------chhHHHHHHHHHhhhhhhhHHHHHHHHHhcCccccccc
Confidence            99999999999999999998888865331     1       23678999999999999999999999999999999999


Q ss_pred             HhhhHHH-----------------------HHHHHHHHHHHHHHHHhccchhH-Hhhhhhhhh-hhhh-hhhcc-----C
Q 016425          172 VAGTAGS-----------------------VGIVVMVICIVFYNVAHRLPVIK-YHEDLKIQA-VNEE-KEEKG-----S  220 (390)
Q Consensus       172 ~~G~~~s-----------------------ia~~~~~~~~~~y~~l~~~~~~~-~~~~~~~~~-~~e~-~e~~~-----~  220 (390)
                      .+|+|.|                       +...+.++-++.|+.+.+.|-.+ .+.+.+..+ .+|+ .+++.     +
T Consensus       149 ssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (402)
T PF02487_consen  149 SSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEAEDDLLESETSESKPD  228 (402)
T ss_pred             cCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCccccccccccccccccc
Confidence            9999977                       11112222333455443333211 111111000 0000 00000     0


Q ss_pred             CCCcccchhHHHHHHHHHHHhHHHHHHhhhhceeccceEee--eec-cCCCchhHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 016425          221 LTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITE--DVH-SEILKDWYGIILIAGYNVFDLVGKSLTAIYLLE  297 (390)
Q Consensus       221 ~~~~~~~~~~~~v~k~i~~~~~~~~l~f~vTl~vFPgi~~~--~~~-~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~~  297 (390)
                      ...+....+.++..|+..++++.++++|+..+.+-+|+.+.  .+. .....+.|+. .-++||+|.+++|+...+.+. 
T Consensus       229 ~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~-Y~~~YQ~GVFISRSS~~~~ri-  306 (402)
T PF02487_consen  229 SSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRW-YQLLYQLGVFISRSSLPFFRI-  306 (402)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHH-HHHHHHHHHhhhhcceeeeeh-
Confidence            00111234456778888889999999999888877777432  111 1112333332 256899999999999766543 


Q ss_pred             CchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHH
Q 016425          298 NEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLG  377 (390)
Q Consensus       298 ~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~G  377 (390)
                        |++|++++++++...++++-.. -+++++.|..+++++.-|+..|-...+++....++++++|||.+-+..+++-+.|
T Consensus       307 --r~lwils~LQ~~nl~~~~l~s~-~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~G  383 (402)
T PF02487_consen  307 --RRLWILSLLQVINLVFLLLQSW-YRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLG  383 (402)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHH
Confidence              6799999999987766654221 2368888888999999999999999999988888999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 016425          378 LAAGSIVAWFW  388 (390)
Q Consensus       378 l~~Gs~ls~~~  388 (390)
                      +++++++++.+
T Consensus       384 I~lAgll~l~l  394 (402)
T PF02487_consen  384 ILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=99.85  E-value=6e-22  Score=185.69  Aligned_cols=331  Identities=16%  Similarity=0.166  Sum_probs=230.4

Q ss_pred             hhHHHHHHhhhhhhHHHHhhcch-hhhhcccCCCc--------------c-chhhhhhHHHHHHHHHHHHHHhcCCCCcc
Q 016425           37 AYIIYFTLGLGFLLPWNAFITAV-DYFSYLYPEAS--------------V-DRIFAVAYMLVGLFCLVIIVFYAHKSDAW  100 (390)
Q Consensus        37 ~y~~f~llGi~~L~pwn~~ita~-dyf~~~~~~~~--------------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  100 (390)
                      .+.+|+++|+++.+.|..+++|. |...++-++..              + .....++.++|+++..+..+++.+|+++.
T Consensus        13 ~~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~   92 (409)
T KOG3880|consen   13 IAVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFG   92 (409)
T ss_pred             cchHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccc
Confidence            88999999999999999999997 55555443211              1 23455789999999999999999999999


Q ss_pred             eEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHhhhHHH--
Q 016425          101 VRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS--  178 (390)
Q Consensus       101 ~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~~~s--  178 (390)
                      .|+.....+.+..+.++..     .+       .-...|.++.+.++++|+.|-+..++++.+|+.-+..|.+|+|.+  
T Consensus        93 ~Ri~~~v~~sa~s~~lVaf-----s~-------s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~~~i~~WSSGTGgAGl  160 (409)
T KOG3880|consen   93 FRIALVVLLSALSFFLVAF-----SN-------SVPMSLLGVVFASISSGLGEITFLALSSRYPSIVIAGWSSGTGGAGL  160 (409)
T ss_pred             hHHHHHHHHHhcceEEEEe-----cc-------chhHHHhhhhhhhhcCCcceeehhhhhccCCCceeccccCCCCcchh
Confidence            9998887777777665422     22       125578899999999999999999999999999999999999866  


Q ss_pred             ----------------------HHHHHHHHHHHHHHHHhccchhHHhhhhhhhh-h------hhhhhhccCC-CCcccch
Q 016425          179 ----------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQA-V------NEEKEEKGSL-TGSMWRS  228 (390)
Q Consensus       179 ----------------------ia~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~-~------~e~~e~~~~~-~~~~~~~  228 (390)
                                            +...+-.+-.++|+.+.|.|-..+-...+... .      .++.+|+.+. +.....+
T Consensus       161 iGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~~~~~~~~~~~a~e~~sv~s~~~~~~  240 (409)
T KOG3880|consen  161 IGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTEIIPSQYLPFEAAEEKSVPSRRLGLK  240 (409)
T ss_pred             hhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCccceeccCCCCcccccccccCchhhhcHH
Confidence                                  22222334455677666655443211110000 0      0000011100 0011223


Q ss_pred             hHHHHHHHHHHHhHHHHHHhhhhceeccceE----e---e-eecc-CCCchhHHHHHHHHHHhhhhhhhhhhhhhhccCc
Q 016425          229 AVWHIVGRVKWYGFGILLIYIVTLSIFPGYI----T---E-DVHS-EILKDWYGIILIAGYNVFDLVGKSLTAIYLLENE  299 (390)
Q Consensus       229 ~~~~v~k~i~~~~~~~~l~f~vTl~vFPgi~----~---~-~~~~-~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~~~~  299 (390)
                      +-+..+|...++++.++++|+-.+.+--|+.    -   . ...+ +....||++    .|++|.|+.|+.......|  
T Consensus       241 e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqv----lYQlGVFiSRSS~~~~~~p--  314 (409)
T KOG3880|consen  241 ETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQV----LYQLGVFISRSSINLFTMP--  314 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhhe----eeeeeEEEEeccceEEech--
Confidence            3344555555689999999985544333321    1   1 1111 223579986    8999999999998877664  


Q ss_pred             hhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHH
Q 016425          300 KVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLA  379 (390)
Q Consensus       300 ~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~  379 (390)
                       .+|.+.+++++..-.|++-.. -.+.++.|+.+++++.=|+-+|-...+.+-.-.|++++++||.|....+.+-+.|+.
T Consensus       315 -~l~~LailQ~vNl~ff~~~a~-~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~  392 (409)
T KOG3880|consen  315 -YLWLLAILQFVNLLFFLLQAW-YWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIF  392 (409)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHH
Confidence             789999999887776665331 113556566666666669999877777776668889999999999999999999999


Q ss_pred             HHHHHHHh
Q 016425          380 AGSIVAWF  387 (390)
Q Consensus       380 ~Gs~ls~~  387 (390)
                      +++.+|+.
T Consensus       393 lA~~lalp  400 (409)
T KOG3880|consen  393 LAGLLALP  400 (409)
T ss_pred             HHHHHhcc
Confidence            99999864

>TIGR00895 2A0115 benzoate transport

Probab=98.30  E-value=0.00011  Score=72.18  Aligned_cols=105  Identities=17%  Similarity=0.002  Sum_probs=66.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      .....++++..+|+.+..+..- .++|.+.....+-.+...+... .     .++.+...+..+++|+..|-.....+.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~  362 (398)
T TIGR00895       289 TGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGS-T-----LFSPTLLLLLGAIAGFFVNGGQSGLYAL  362 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-H-----hhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788999999998766543 2333322222211111111111 1     2234455667778888887777777777


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ..+..++++|..+-.++.....+|..+|..++
T Consensus       363 ~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~  394 (398)
T TIGR00895       363 MALFYPTAIRATGVGWAIGIGRLGAIIGPILA  394 (398)
T ss_pred             HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            78888888898887777777788888887664

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.28  E-value=4.3e-05  Score=74.37  Aligned_cols=105  Identities=13%  Similarity=0.081  Sum_probs=64.0

Q ss_pred             hHHHHhhcchhhhhcccCCCcc-chhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheeccc
Q 016425           50 LPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR  128 (390)
Q Consensus        50 ~pwn~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~  128 (390)
                      ..++.+-.+.+++++.+.-+.. ...+...+.+...+..+..-.+.+|...|.-+..+..+..++.+..+..     +  
T Consensus         9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~--   81 (379)
T TIGR00881         9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----T--   81 (379)
T ss_pred             HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----h--
Confidence            4456666666777776543322 2333445566666666677777888887766667776666665544332     1  


Q ss_pred             CCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425          129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR  166 (390)
Q Consensus       129 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~  166 (390)
                           .++..++..++.|++.+.......++.+ .+|++
T Consensus        82 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  115 (379)
T TIGR00881        82 -----SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS  115 (379)
T ss_pred             -----hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh
Confidence                 2344455666778888887777776655 45654

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.20  E-value=0.00016  Score=70.33  Aligned_cols=104  Identities=12%  Similarity=-0.027  Sum_probs=60.9

Q ss_pred             HHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCC
Q 016425           52 WNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVG  130 (390)
Q Consensus        52 wn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~  130 (390)
                      ++.+-.+.+++++++.-++.+ ......+.+...+.....-.+.+|...|.-+..+..+..+.....+..     .    
T Consensus        10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~----   80 (399)
T TIGR00893        10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----G----   80 (399)
T ss_pred             HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----c----
Confidence            344444556666655433222 334445666667777777777788876665666666655554443321     1    


Q ss_pred             cchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHH
Q 016425          131 LYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRY  167 (390)
Q Consensus       131 ~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~  167 (390)
                         .++..++..++.|++.+........+.+. +|++.
T Consensus        81 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  115 (399)
T TIGR00893        81 ---AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE  115 (399)
T ss_pred             ---CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH
Confidence               23444556677888888888777777664 66553

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.15  E-value=0.00019  Score=73.36  Aligned_cols=107  Identities=16%  Similarity=0.127  Sum_probs=66.6

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcc---CchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425          275 ILIAGYNVFDLVGKSLTAIYLLE---NEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM  351 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~~~---~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m  351 (390)
                      ....++.+++.++|....+..-+   ++++......+-+.....++++..    .++.+..++..+++|+..|-......
T Consensus       280 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~~~~~~i~~~~~G~~~g~~~~~~~  355 (455)
T TIGR00892       280 FLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL----AGDYTGLVIYCIFFGLSFGSVGALLF  355 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhchHHHHHH
Confidence            45667889999988776654321   222222222222222222222221    23345556778889999988877777


Q ss_pred             eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ....+.++++++..+-.+......+|-.+|..++
T Consensus       356 ~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~  389 (455)
T TIGR00892       356 EVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA  389 (455)
T ss_pred             HHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence            7777777888888887788877888877776543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.10  E-value=0.00024  Score=68.56  Aligned_cols=303  Identities=14%  Similarity=0.121  Sum_probs=144.5

Q ss_pred             HHHHhhcchh-hhhcccCCCc-cchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheeccc
Q 016425           51 PWNAFITAVD-YFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR  128 (390)
Q Consensus        51 pwn~~ita~d-yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~  128 (390)
                      .++.+....+ ++.+++.-+. .-......+.+...+.....-.+.+|...|.=+..+.++.+++.++. ..  .  +  
T Consensus        11 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~-~~--~--~--   83 (352)
T PF07690_consen   11 GFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL-AF--A--S--   83 (352)
T ss_dssp             HHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH-HH--H--C--
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh-hh--h--h--
Confidence            3444444445 6666554222 22344456677777777777778888776554556666665552222 11  1  1  


Q ss_pred             CCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCH-HHHH---HHHhhhHHH----------------------HHH
Q 016425          129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPD-RYMQ---ALVAGTAGS----------------------VGI  181 (390)
Q Consensus       129 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~-~~~~---a~~~G~~~s----------------------ia~  181 (390)
                           .++..++..++.|++.+.......++.+ .+|+ +...   -...+.+++                      +..
T Consensus        84 -----~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~  158 (352)
T PF07690_consen   84 -----NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA  158 (352)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred             -----hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence                 1235567777889998888888888766 5666 2222   222222222                      111


Q ss_pred             HHHHHHHHHHHH-HhccchhHHhhhhhhhhhhhhhhhccCCCCcccchh-HHHHHHH--HHHHhHHHHH---Hhhhhcee
Q 016425          182 VVMVICIVFYNV-AHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSA-VWHIVGR--VKWYGFGILL---IYIVTLSI  254 (390)
Q Consensus       182 ~~~~~~~~~y~~-l~~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~~~~~-~~~v~k~--i~~~~~~~~l---~f~vTl~v  254 (390)
                      ++.+++.++... +.+.|..+     +    +++++++.+. .++...+ ++.+.|+  .|...+..++   .+......
T Consensus       159 ~~~~~~~il~~~~~~~~~~~~-----~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (352)
T PF07690_consen  159 ILSLIAAILFILFLPEPPPPR-----E----RESPKESESK-KPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFF  228 (352)
T ss_dssp             HHHHHHHHHHHCCC---STTT-----T------SSTTTT---HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhHhhhhhhccccc-----c----cccccccccc-cccccccccccccccchhhhhhhhhhHHHHHHHHhhcc
Confidence            122222111111 11111100     0    0000000000 0001111 2222222  1212222222   22222333


Q ss_pred             ccceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhhhc-cCc-hhHHHHHHHHHHHHhhhhhcccCCcccccchhH
Q 016425          255 FPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL-ENE-KVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPV  332 (390)
Q Consensus       255 FPgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~-~~~-~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~  332 (390)
                      .|.+..+..+.  .+.........+..++..+|+....+..- .++ +........-.+....+....    ..++..+.
T Consensus       229 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  302 (352)
T PF07690_consen  229 LPLYLQEVLGF--SGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLP----FSSSPVWL  302 (352)
T ss_dssp             HHHHCCHHHHC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSH----HHCHHHHH
T ss_pred             cchhhhhccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHH
Confidence            34431111111  11233344567778888777766654432 222 233332222222221111111    11334556


Q ss_pred             HHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHH
Q 016425          333 TLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAG  381 (390)
Q Consensus       333 ~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~G  381 (390)
                      ++..+++|+..|........+..+.++++++..+..+....-.+|..+|
T Consensus       303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig  351 (352)
T PF07690_consen  303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG  351 (352)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence            6677889999998888888888888888889888888888888777765

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.09  E-value=0.00049  Score=66.83  Aligned_cols=107  Identities=10%  Similarity=0.042  Sum_probs=59.3

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHH-HHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425          274 IILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGC-FARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM  351 (390)
Q Consensus       274 ~~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m  351 (390)
                      .....++++++.+||....+..- .++|+..... +.-.+...++..   .+..  +.+..+...++.|+..|...+...
T Consensus       243 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~g~~~g~~~~~~~  317 (377)
T TIGR00890       243 VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLF---IPML--NDVLFLATVALVFFTWGGTISLFP  317 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH---cccc--hhHHHHHHHHHHHHHhccchhccH
Confidence            34567899999999998766432 2334332222 211111111111   1111  222333445667777776655544


Q ss_pred             eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      .+.++..++++|..+-.+......+|..+|..+.
T Consensus       318 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~  351 (377)
T TIGR00890       318 SLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA  351 (377)
T ss_pred             HHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence            4556666777787777777777777777776543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.03  E-value=0.0007  Score=69.01  Aligned_cols=104  Identities=14%  Similarity=0.027  Sum_probs=51.9

Q ss_pred             hhcchhhhhcccCCCcc--chhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcc
Q 016425           55 FITAVDYFSYLYPEASV--DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLY  132 (390)
Q Consensus        55 ~ita~dyf~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~  132 (390)
                      +-.+.+|..+.  +-+.  .......+.+...+.+...-.+.+|+..|.=+..+.++..+..+...+...   .    . 
T Consensus        48 ~~~~~p~l~~~--g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---~----~-  117 (452)
T PRK11273         48 FALAMPYLVEQ--GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---A----T-  117 (452)
T ss_pred             HHHhhHHHHHc--CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---c----c-
Confidence            44456676653  2221  122223455556666666667778887665444555555544443332210   0    0 


Q ss_pred             hhhHHHHHHHHHhhhhhhhhhchhhh-hcCCCCHHHH
Q 016425          133 DGFTVTVGAVALSGLADALVQGGLIG-AAGELPDRYM  168 (390)
Q Consensus       133 ~~f~~~l~~~~~~g~~~~~~q~s~~~-la~~fp~~~~  168 (390)
                      ..+...++..++.|++.+........ ++..+|++..
T Consensus       118 ~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r  154 (452)
T PRK11273        118 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER  154 (452)
T ss_pred             ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHH
Confidence            12233344455667777666554333 3345787654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.01  E-value=0.0017  Score=64.99  Aligned_cols=82  Identities=9%  Similarity=0.098  Sum_probs=45.7

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchh
Q 016425           77 VAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL  156 (390)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~  156 (390)
                      ..+.+...+...+.-.+.+|+..|.-+..+..+..+..++....     .    ....++..++.-++.|++.+..+...
T Consensus        78 ~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~r~l~G~~~~~~~~~~  148 (481)
T TIGR00879        78 SIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA-----A----FALSVEMLIVGRVLLGIGVGIASALV  148 (481)
T ss_pred             HHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh-----c----cccchHHHHHHHHHHHhhhhHHHhHH
Confidence            34555555666666666677665444445555544444332221     1    01123445566778888888887777


Q ss_pred             hhhcC-CCCHHH
Q 016425          157 IGAAG-ELPDRY  167 (390)
Q Consensus       157 ~~la~-~fp~~~  167 (390)
                      ..+.+ .+|++.
T Consensus       149 ~~~i~~~~~~~~  160 (481)
T TIGR00879       149 PMYLSEIAPKAL  160 (481)
T ss_pred             HHHHHccCChhh
Confidence            66655 466654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.97  E-value=0.0012  Score=65.81  Aligned_cols=105  Identities=22%  Similarity=0.098  Sum_probs=62.0

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      .....++++..+|+....+... .++|+.......-.. +-++.+ ..    .++.+...+..+++|+..+-..+..+..
T Consensus       259 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~-~~~~~~-~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~  332 (406)
T PRK11551        259 LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGIL-ASLAAL-AA----APSFAGMLLAGFAAGLFVVGGQSVLYAL  332 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHH-Hh----cCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3466788999999998766433 233443322211111 111111 11    1233444555666777665555666667


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      .++..++++|..+-.+.......|..+|..+.
T Consensus       333 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~  364 (406)
T PRK11551        333 APLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA  364 (406)
T ss_pred             HHHHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence            78888888888887777777777777776654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.92  E-value=0.002  Score=62.26  Aligned_cols=106  Identities=14%  Similarity=0.091  Sum_probs=66.2

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      .....++++..+|+....+... .++++....... ...+.++..... +.   +.+...+..+++|+..|........+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---~~~~~~~~~~~~g~~~~~~~~~~~~~  325 (365)
T TIGR00900       251 WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIF-VIGLAILVVGLT-PP---NFPLFLVLWFAIGVGYGPINVPQGTL  325 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH-HHHHHHHHHHhh-ch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466788899999888764432 233333322210 111111211111 11   23455677788899888887777777


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ..+.+++++|..+..+.......|..+|..++
T Consensus       326 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~  357 (365)
T TIGR00900       326 LQRRVPAELLGRVFGAQFSLSHAAWPLGLILA  357 (365)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888998888888888888888777654

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.91  E-value=0.0017  Score=65.72  Aligned_cols=82  Identities=7%  Similarity=-0.067  Sum_probs=43.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhh
Q 016425           74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ  153 (390)
Q Consensus        74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q  153 (390)
                      .+...+.+...+.....-++.+|+..+.=+..+..+..++.+..+..     +       .++..++.-++.|++.|...
T Consensus        62 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-------~~~~l~~~~~l~g~~~g~~~  129 (434)
T PRK11663         62 LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-----S-------SLWAFALLWVLNAFFQGWGW  129 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----h-------HHHHHHHHHHHHHHHHHccc
Confidence            44445666666667777777788776543445555544444433321     1       12222333345666666655


Q ss_pred             chhhhhcC-CCCHHH
Q 016425          154 GGLIGAAG-ELPDRY  167 (390)
Q Consensus       154 ~s~~~la~-~fp~~~  167 (390)
                      .....+.+ .+|++.
T Consensus       130 ~~~~~~~~~~~~~~~  144 (434)
T PRK11663        130 PVCAKLLTAWYSRTE  144 (434)
T ss_pred             hHHHHHHHHhCCHHH
Confidence            55555544 567654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.90  E-value=0.0031  Score=62.73  Aligned_cols=102  Identities=16%  Similarity=-0.015  Sum_probs=56.7

Q ss_pred             HHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecC
Q 016425          277 IAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAP  355 (390)
Q Consensus       277 ~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p  355 (390)
                      ...+.++-.+||....+... .++|+......  .+....++....    .++.+..++..+++|+..|-.........-
T Consensus       255 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~  328 (399)
T PRK05122        255 LTLFGVAFVGARLLFGNLINRLGGLRVAIVSL--LVEILGLLLLWL----APSPWMALIGAALTGFGFSLVFPALGVEAV  328 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHH----hccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            45678888889887665432 23444332222  122211111111    123344556667788887755444333444


Q ss_pred             CcCChhhHHHHhHHHHHHHHHHHHHHHHH
Q 016425          356 KVVQLQHAETAGIVIVLFLVLGLAAGSIV  384 (390)
Q Consensus       356 ~~v~~~eke~ag~~~~~~l~~Gl~~Gs~l  384 (390)
                      +..++++|..+..++......|..+|..+
T Consensus       329 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  357 (399)
T PRK05122        329 KRVPPQNRGAALGAYSVFLDLSLGITGPL  357 (399)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888888878777777776665443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.0029  Score=63.35  Aligned_cols=274  Identities=16%  Similarity=0.130  Sum_probs=149.0

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhh
Q 016425           78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI  157 (390)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~  157 (390)
                      .|-+...+.......+..|++.|.-....+.+++++-++..+.            ..|.+.++.=++.|++.|.+-+...
T Consensus        56 ~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA------------p~f~~Ll~aR~~~g~a~G~f~~i~~  123 (394)
T COG2814          56 AYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA------------PSFAVLLLARALAGLAHGVFWSIAA  123 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666666677777888887666666666666665543331            2467778888889999999988888


Q ss_pred             hhcCC-CCHHHH----HHHHhhhHHH----------H--------H-HHHHHHHHHHHHHH-hccchhHHhhhhhhhhhh
Q 016425          158 GAAGE-LPDRYM----QALVAGTAGS----------V--------G-IVVMVICIVFYNVA-HRLPVIKYHEDLKIQAVN  212 (390)
Q Consensus       158 ~la~~-fp~~~~----~a~~~G~~~s----------i--------a-~~~~~~~~~~y~~l-~~~~~~~~~~~~~~~~~~  212 (390)
                      ++++. -||+..    .-+++|..++          +        + ..+..++++....+ ...|      +.+     
T Consensus       124 ~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP------~~~-----  192 (394)
T COG2814         124 ALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP------PSE-----  192 (394)
T ss_pred             HHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC------Ccc-----
Confidence            88885 566443    3446776666          1        1 11112222222222 2334      000     


Q ss_pred             hhhhhccCCCCcccchhHHHHHH--HHHHHhHHHHHHhhhhceeccceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhh
Q 016425          213 EEKEEKGSLTGSMWRSAVWHIVG--RVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSL  290 (390)
Q Consensus       213 e~~e~~~~~~~~~~~~~~~~v~k--~i~~~~~~~~l~f~vTl~vFPgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~  290 (390)
                      .+++.++      ...+..+++|  ++|...+..++.+.=.+..|.=+.+.-.+....+.-......+.|-+|-++|-.+
T Consensus       193 ~~~~~~~------~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~  266 (394)
T COG2814         193 ISGSLPG------PLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLL  266 (394)
T ss_pred             CCCCCCc------chhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHH
Confidence            0000001      1123344444  4555555555544444444422211100111111222345578999999999988


Q ss_pred             hhhhhccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHH
Q 016425          291 TAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVI  370 (390)
Q Consensus       291 ~~~~~~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~  370 (390)
                      .++..-+++++..+...+ +..+.++.+...    -++.+...+.++++|++++-.....-+.-.+ ..||.+|.++.++
T Consensus       267 gGrl~dr~~~~~l~~~~~-l~a~~~l~l~~~----~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~  340 (394)
T COG2814         267 GGRLADRGPRRALIAALL-LLALALLALTFT----GASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLN  340 (394)
T ss_pred             HhhhccccchhHHHHHHH-HHHHHHHHHHHh----cchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHH
Confidence            876554444443332211 111112212111    1223455666777888875443333332222 5568999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 016425          371 VLFLVLGLAAGSIVAW  386 (390)
Q Consensus       371 ~~~l~~Gl~~Gs~ls~  386 (390)
                      .-+.++|+.+|+.++=
T Consensus       341 ~aa~nlgia~GA~lGG  356 (394)
T COG2814         341 VAAFNLGIALGAALGG  356 (394)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998864

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.84  E-value=0.0052  Score=61.63  Aligned_cols=103  Identities=14%  Similarity=-0.004  Sum_probs=61.1

Q ss_pred             HHHHHHhhhhhhhhhhhhhhcc-Cchh-HHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          276 LIAGYNVFDLVGKSLTAIYLLE-NEKV-AIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~~~-~~~~-l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      ....+.+|..+|+....+...+ ++++ +....+.-.+.+  +++ ..    .++.+...+.++++|+..|........+
T Consensus       264 ~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~  336 (417)
T PRK10489        264 LYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAV--GLF-GL----MPMWILAVLCLALFGYLSAISSLLQYTL  336 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHH--HHH-Hc----cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788999999887654432 2232 222222111111  111 11    1232344567778888887766655555


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ..+..++++|..+-.+.......|..+|..+.
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~  368 (417)
T PRK10489        337 LQTQTPDEMLGRINGLWTAQNVTGDAIGAALL  368 (417)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence            56667777888888887777778888877664

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.83  E-value=0.0061  Score=61.01  Aligned_cols=104  Identities=21%  Similarity=0.312  Sum_probs=58.2

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccCchhHHHH-HHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYLLENEKVAIGG-CFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~~~~~~~l~~l-sl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      .....+.++..+|+.+..+...+.+|+.+.. .+.-.+. -+++....     ++.+...+..+++|+..|.........
T Consensus       256 ~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~-~~~l~~~~-----~~~~~~~~~~~l~G~~~~~~~~~~~~~  329 (394)
T PRK10213        256 LVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVS-ALVLTLWG-----SDKIVATGVAIIWGLTFALVPVGWSTW  329 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH-HHHHHHHh-----hhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3466788999999988766544433332222 1111111 01111111     233445566778888887777655544


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      .-+..+ ++++.++........+|..+|+.++
T Consensus       330 ~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~  360 (394)
T PRK10213        330 ITRSLA-DQAEKAGSIQVAVIQLANTCGAAIG  360 (394)
T ss_pred             HHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444454 4566666666666678888877654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.82  E-value=0.0092  Score=64.84  Aligned_cols=105  Identities=15%  Similarity=0.099  Sum_probs=62.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      ...++.+++.++|..++.+.. ..++|++++...+=.. +-.+++.     +.++.+..+++.+++|+..+-..+....+
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsa-i~~ll~~-----~~~s~~~ll~~~~l~g~~~~~~~~~~~a~  672 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSC-ISCFFLS-----FGNSESAMIALLCLFGGLSIAAWNALDVL  672 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHH-----HHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677899999999987754 3456654433321111 1111111     11223334444556666544444445567


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      .++..+.++|..+..+....-.+|..+|..++
T Consensus       673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~  704 (742)
T TIGR01299       673 TVELYPSDKRATAFGFLNALCKAAAVLGILIF  704 (742)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888999888888888888888887665

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.80  E-value=0.011  Score=58.07  Aligned_cols=108  Identities=11%  Similarity=0.101  Sum_probs=59.5

Q ss_pred             hhhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheec
Q 016425           48 FLLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIK  126 (390)
Q Consensus        48 ~L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~  126 (390)
                      .-+-+..+-...+.+++.+.-++-+ ......+.+...+.....-.+.+|...|.-+..+.++..+..+....     .+
T Consensus        24 ~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-----~~   98 (405)
T TIGR00891        24 DAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF-----AP   98 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----hc
Confidence            3344555555556666655433222 23334556666666666667777776555445555444444433222     11


Q ss_pred             ccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 016425          127 GRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY  167 (390)
Q Consensus       127 ~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~  167 (390)
                             .+...++.-++.|++.+.......++.. .+|++.
T Consensus        99 -------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  133 (405)
T TIGR00891        99 -------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL  133 (405)
T ss_pred             -------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence                   2344455667788888777776666654 466554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.78  E-value=0.0054  Score=60.12  Aligned_cols=106  Identities=8%  Similarity=0.015  Sum_probs=58.8

Q ss_pred             hHHHHhhcchhhhhcccCCCcc-chhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheeccc
Q 016425           50 LPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR  128 (390)
Q Consensus        50 ~pwn~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~  128 (390)
                      +..+.+....+++++.+..++- .......+.+...+...+.-.+.+|...|.-+..+.++..+..+....     .+  
T Consensus        19 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----~~--   91 (385)
T TIGR00710        19 LGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL-----SN--   91 (385)
T ss_pred             HHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH-----Hc--
Confidence            4455666666777666543322 233334555666666666666777776544344455454444443322     11  


Q ss_pred             CCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHH
Q 016425          129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRY  167 (390)
Q Consensus       129 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~  167 (390)
                           .++..++..++.|++.+.......++... +|++.
T Consensus        92 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  126 (385)
T TIGR00710        92 -----NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE  126 (385)
T ss_pred             -----cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH
Confidence                 12334455667788888877777777664 66543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.67  E-value=0.0017  Score=64.62  Aligned_cols=126  Identities=13%  Similarity=0.063  Sum_probs=86.9

Q ss_pred             CCCCCCccchhhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccchh-hhhhHHHHHHHHHHHHHHhcCCCCcceEehh
Q 016425           27 QKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRI-FAVAYMLVGLFCLVIIVFYAHKSDAWVRINV  105 (390)
Q Consensus        27 ~~~p~d~~~~~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~  105 (390)
                      ++.+|-.+...+..|++.|+..-+-    -.-.+-+++.|.-+..+.. +-.++....++..+-.-++.+|+++|.-+..
T Consensus         8 ~~~~~~~~v~~t~lFfl~G~~~~l~----diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~l   83 (422)
T COG0738           8 SKSVKLAFVLLTSLFFLWGFITCLN----DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVL   83 (422)
T ss_pred             cCCceeHHHHHHHHHHHHHHHhhcc----hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHH
Confidence            4456666788999999999755431    1112556666655555533 3356666777777777788899999999999


Q ss_pred             hHHHHHHHHH-HHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHH
Q 016425          106 GLGLFVVALL-VVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDR  166 (390)
Q Consensus       106 ~l~~~~v~~~-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~  166 (390)
                      |+.++++... +.|..   ..       ..|..-++...++|.+-+++|.+.=.+.+...++
T Consensus        84 gL~l~avg~~lF~pAa---~~-------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~  135 (422)
T COG0738          84 GLLLYAVGAALFWPAA---SS-------KSYGFFLVALFILASGIGLLETAANPYVTLLGKP  135 (422)
T ss_pred             HHHHHHHHHHHHhhhh---hh-------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence            9999988654 33432   11       1344456677889999999999998888876543

>PRK12382 putative transporter; Provisional

Probab=97.65  E-value=0.012  Score=58.34  Aligned_cols=102  Identities=16%  Similarity=-0.014  Sum_probs=58.0

Q ss_pred             HHHHHhhhhhhhhhhhhhhc-cCchh-HHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425          277 IAGYNVFDLVGKSLTAIYLL-ENEKV-AIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA  354 (390)
Q Consensus       277 ~~~FnvgD~iGR~~~~~~~~-~~~~~-l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~  354 (390)
                      ...+.++..+|+....+... .++|+ ......+..+...++.  ..     ++.+...+..+++|+..|..........
T Consensus       255 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~  327 (392)
T PRK12382        255 LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW--LA-----PTAWVALAGAALTGAGCSLIFPALGVEV  327 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH--Hc-----ccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            45678888888877654332 23333 3332232222221111  11     2234445566777888776555444444


Q ss_pred             CCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      .+..++++|..+-.+.......|..+|+.++
T Consensus       328 ~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~  358 (392)
T PRK12382        328 VKRVPSQVRGTALGGYAAFQDIAYGVSGPLA  358 (392)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666778888877777777777877777554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.53  E-value=0.0054  Score=62.15  Aligned_cols=107  Identities=14%  Similarity=0.040  Sum_probs=50.6

Q ss_pred             HHHHhhcchhhhhcccCCCccc--hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheeccc
Q 016425           51 PWNAFITAVDYFSYLYPEASVD--RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR  128 (390)
Q Consensus        51 pwn~~ita~dyf~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~  128 (390)
                      ....+....+|.++ + +.+.+  ......+.+...+.....-.+.+|+..|.-+..+.++..++.+.......      
T Consensus        42 ~~~~~~~~~p~~~~-~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------  113 (438)
T TIGR00712        42 VRKNFALAMPYLVE-Q-GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW------  113 (438)
T ss_pred             HhccHHhhhHHHHH-c-CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc------
Confidence            33444445566665 2 32221  23333555556666666666778887655444555555555443322110      


Q ss_pred             CCcchhhHHHHHHHHHhhhhhhhhhchhhh-hcCCCCHHH
Q 016425          129 VGLYDGFTVTVGAVALSGLADALVQGGLIG-AAGELPDRY  167 (390)
Q Consensus       129 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~-la~~fp~~~  167 (390)
                      ..  ..+....+..++.|++.+...+.... +...+|++.
T Consensus       114 ~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~  151 (438)
T TIGR00712       114 AT--SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE  151 (438)
T ss_pred             cc--chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc
Confidence            00  12222334444566666655443332 233576543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.48  E-value=0.023  Score=54.30  Aligned_cols=298  Identities=16%  Similarity=0.115  Sum_probs=147.7

Q ss_pred             hhhHHHHhhcchhhhhcccCCCc-cchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheec
Q 016425           48 FLLPWNAFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIK  126 (390)
Q Consensus        48 ~L~pwn~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~  126 (390)
                      .-+.++......+.+.+++..++ ........+.+...+.....-.+.+|.+.|.-+..+.++..+..+.....     +
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~   85 (352)
T cd06174          11 SGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-----S   85 (352)
T ss_pred             HHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-----c
Confidence            33445555555555555443222 22333445566666666666677788776665556666666555543321     1


Q ss_pred             ccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHhccchhH
Q 016425          127 GRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRYMQAL----VAGTAGSVGIVVMVICIVFYNVAHRLPVIK  201 (390)
Q Consensus       127 ~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~~~a~----~~G~~~sia~~~~~~~~~~y~~l~~~~~~~  201 (390)
                             .++...+..++.|++.+..+....++... +|++.-...    ..+.+++    ..+...+.-.+..+..+..
T Consensus        86 -------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~  154 (352)
T cd06174          86 -------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLG----ALLGPLLGGLLAESLGWRW  154 (352)
T ss_pred             -------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHH----HHHHHHHHHHHHHHhhHHH
Confidence                   23444566677888888888888777764 554332111    1111111    1111111111111111000


Q ss_pred             -HhhhhhhhhhhhhhhhccCCCCcccchhHHHHHHHHHHHhHHHHHHhhhh---ceeccceEeeeeccCCCchhHHHHHH
Q 016425          202 -YHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVT---LSIFPGYITEDVHSEILKDWYGIILI  277 (390)
Q Consensus       202 -~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~~v~k~i~~~~~~~~l~f~vT---l~vFPgi~~~~~~~~~~~~w~~~~~~  277 (390)
                       ++...--.-.              ...-.....|+.+...+..++.....   ....|-+..+ .  .+.++...-...
T Consensus       155 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~  217 (352)
T cd06174         155 LFLILAILGLL--------------LALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQE-V--LGLSAAEAGLLL  217 (352)
T ss_pred             HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-h--cCCCHHHHHHHH
Confidence             0000000000              00000000044444444433333322   2222332111 1  011233334557


Q ss_pred             HHHHhhhhhhhhhhhhhhc-cCchh-HHHHHHHHHHHH-hhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425          278 AGYNVFDLVGKSLTAIYLL-ENEKV-AIGGCFARLLFF-PLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA  354 (390)
Q Consensus       278 ~~FnvgD~iGR~~~~~~~~-~~~~~-l~~lsl~R~ifi-plf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~  354 (390)
                      ..+.++..+|+....+... .++|+ ......  .+.. ..+....     .++.+..++..+++|+..|...+....+.
T Consensus       218 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  290 (352)
T cd06174         218 SLFGLGGILGALLGGLLSDRLGRRRLLLLIGL--LLAALGLLLLAL-----APSLALLLVALLLLGFGLGFAFPALLTLA  290 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            7888999999988765332 22333 222221  1111 1111111     12235566778888999998888888888


Q ss_pred             CCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      .+..++++|..+-.+.......|..+|+.++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~  321 (352)
T cd06174         291 SELAPPEARGTASGLFNTFGSLGGALGPLLA  321 (352)
T ss_pred             HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889998888888888888888887765

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.46  E-value=0.037  Score=54.87  Aligned_cols=55  Identities=16%  Similarity=0.124  Sum_probs=36.9

Q ss_pred             hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      +..+....++|+..|-.....+.+..+..+ +++..++.+.+....+|-.+|+.++
T Consensus       300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~  354 (394)
T PRK11652        300 WTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLS  354 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            445556677788877766666665555443 4667777777767778888887654

>PRK03545 putative arabinose transporter; Provisional

Probab=97.43  E-value=0.047  Score=54.16  Aligned_cols=96  Identities=11%  Similarity=0.066  Sum_probs=52.9

Q ss_pred             hhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHH
Q 016425           59 VDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTV  137 (390)
Q Consensus        59 ~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~  137 (390)
                      .+..++++.-++.+ ......+.+...+.....-.+.+|++.|.-+..+..+..+..+....     .+       .++.
T Consensus        32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~-------~~~~   99 (390)
T PRK03545         32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL-----AW-------NFTV   99 (390)
T ss_pred             hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH-----hc-------cHHH
Confidence            45556555433322 22333444455555555567788888776666666665555443322     11       2344


Q ss_pred             HHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425          138 TVGAVALSGLADALVQGGLIGAAG-ELPDR  166 (390)
Q Consensus       138 ~l~~~~~~g~~~~~~q~s~~~la~-~fp~~  166 (390)
                      .++.-++.|++.+.......++.+ .+|++
T Consensus       100 l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~  129 (390)
T PRK03545        100 LLISRIGIAFAHAIFWSITASLAIRVAPAG  129 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCChh
Confidence            445556778777777766666655 45653

>PRK10133 L-fucose transporter; Provisional

Probab=97.42  E-value=0.029  Score=57.18  Aligned_cols=119  Identities=10%  Similarity=0.020  Sum_probs=69.8

Q ss_pred             hhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHH
Q 016425           37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALL  115 (390)
Q Consensus        37 ~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~  115 (390)
                      ..+.|++.|+....    .-.-.+.+++.+.-++-+ ......+.+...+.+...-.+.+|+..|.=+..++.+..+..+
T Consensus        31 ~~~~~~~~~~~~~~----~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~  106 (438)
T PRK10133         31 LCSLFFLWAVANNL----NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA  106 (438)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            34556666665432    222234456666543332 2333456666666666777777887776666677777766654


Q ss_pred             HHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHH
Q 016425          116 VVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYM  168 (390)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~  168 (390)
                      ......  ..       ..+...++.-++.|++.|..+.....+....+++..
T Consensus       107 l~~~~~--~a-------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~  150 (438)
T PRK10133        107 LFWPAA--EI-------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS  150 (438)
T ss_pred             HHHHHH--hc-------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh
Confidence            321111  11       124556677788999999999888887666654433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.41  E-value=0.04  Score=54.58  Aligned_cols=105  Identities=15%  Similarity=0.096  Sum_probs=50.6

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      ....++.++..+++....+..- .++|+......  .+....++....    .++.+...+..++.|+..|-........
T Consensus       262 ~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~  335 (408)
T PRK09874        262 MIASVPGVAALLSAPRLGKLGDRIGPEKILITAL--IFSVLLLIPMSF----VQTPLQLGILRFLLGAADGALLPAVQTL  335 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH--HHHHHHHHHHHH----hccHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence            3445667788888776544322 23344332222  111111111111    1233445566677888887665544443


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ..+..+++++...-.+.......|..+|..++
T Consensus       336 ~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~  367 (408)
T PRK09874        336 LVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMG  367 (408)
T ss_pred             HHHhCCcccceeeehHHHHHHHHHHHhhHHHH
Confidence            33444455555544444444555666655554

>TIGR00898 2A0119 cation transport protein

Probab=97.41  E-value=0.034  Score=57.22  Aligned_cols=103  Identities=10%  Similarity=-0.006  Sum_probs=54.6

Q ss_pred             HHHHHhhhhhhhhhhhhhhc-cCchhHHHHH-HHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425          277 IAGYNVFDLVGKSLTAIYLL-ENEKVAIGGC-FARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA  354 (390)
Q Consensus       277 ~~~FnvgD~iGR~~~~~~~~-~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~  354 (390)
                      ..++.+....|+.+..+..- ..+|+..... ++-.+..-++.... .    .+.+..+.+.++.++..+-.......+.
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP-V----DLYFLRTALAVLGKFGITSAFQMVYLYT  435 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-C----CchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667888888887655432 3444433222 22222211111111 1    1113334444445555544455566777


Q ss_pred             CCcCChhhHHHHhHHHHHHHHHHHHHHHHH
Q 016425          355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIV  384 (390)
Q Consensus       355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~l  384 (390)
                      ++..+++.|..+-.+......+|-.+|..+
T Consensus       436 ~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i  465 (505)
T TIGR00898       436 AELYPTVVRNLGVGVCSTMARVGSIISPFL  465 (505)
T ss_pred             cccccHHHHhhhHhHHHHHHHHHHHHHhHH
Confidence            888888888887666666666666666544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.38  E-value=0.043  Score=55.79  Aligned_cols=108  Identities=10%  Similarity=0.090  Sum_probs=62.9

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhc-ccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGC-LHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI  352 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~-~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi  352 (390)
                      .......++..+|+.+..+..- .++|+....... +..+-.+++. ...|.  .+.+.....+++.|+..|......+.
T Consensus       295 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~g~~~~~~~~~~  371 (485)
T TIGR00711       295 LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLI-LYAVGFYWRAFTFTPD--TPFLAIALPQFIRGFGMGCFFMPLTT  371 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHH-HHHHHHHHHhccCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455678888888888765432 234443322221 1111111111 11111  12233445577788888877665555


Q ss_pred             ecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       353 ~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      .+.+.++++++..+..+..+.-..|-.+|..+.
T Consensus       372 ~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~  404 (485)
T TIGR00711       372 IALSGLPPHKIARGSSLSNFTRQLGGSIGTALI  404 (485)
T ss_pred             HHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            566777888888888888888888888887654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.31  E-value=0.045  Score=57.26  Aligned_cols=318  Identities=14%  Similarity=0.052  Sum_probs=159.2

Q ss_pred             hhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHH
Q 016425           37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALL  115 (390)
Q Consensus        37 ~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~  115 (390)
                      .|-.+++--..+.+.......+...+.....++... .....+..+|.++..+..-.+..|.+.|.-+..+-.+.++..+
T Consensus        11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~   90 (524)
T PF05977_consen   11 NFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL   90 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            344444444445555555555555555544443322 2334566777777777777788888876666677766665555


Q ss_pred             HHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHHH-HHHHh-----------hhHHH----
Q 016425          116 VVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRYM-QALVA-----------GTAGS----  178 (390)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~~-~a~~~-----------G~~~s----  178 (390)
                      ++++...  .+    . ...+..++..++.|+++++.+.+..++.. +.|++.. +|...           |-+++    
T Consensus        91 ~L~~l~~--~~----~-~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv  163 (524)
T PF05977_consen   91 LLAVLAF--FG----L-LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV  163 (524)
T ss_pred             HHHHHHH--hC----c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            5554322  21    1 23355667788899999999999888876 5776544 33321           11111    


Q ss_pred             --HHH-HHHHHHHHHHHHH----hccchhHHhhhhhhhhhhhhhhhccCCCCcccchhHH---HHHHHHHH--HhHHHHH
Q 016425          179 --VGI-VVMVICIVFYNVA----HRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVW---HIVGRVKW--YGFGILL  246 (390)
Q Consensus       179 --ia~-~~~~~~~~~y~~l----~~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~---~v~k~i~~--~~~~~~l  246 (390)
                        .+. ...++..++|...    .+.+.     +.+ +   ++.+++.      ...+++   +..++...  ..+....
T Consensus       164 a~~G~~~~f~inalsfl~~i~~l~~~~~-----~~~-~---~~~~~e~------~~~~l~~G~ryv~~~~~l~~~l~~~~  228 (524)
T PF05977_consen  164 AFFGAAAAFLINALSFLISILALLRWKP-----PPP-P---SSLPRER------FFSALREGLRYVRSSPPLRSVLLRSF  228 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccc-----ccc-c---cccchhh------hhhhHHHHHHHHhcchHHHHHHHHHH
Confidence              111 1122233333321    11110     000 0   0000000      011111   11111111  0111111


Q ss_pred             Hhhh----hceeccceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhccc
Q 016425          247 IYIV----TLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLH  321 (390)
Q Consensus       247 ~f~v----Tl~vFPgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~  321 (390)
                      .|..    ...+.|-+..+..  +.....+- ++...+.+|=.+|-.+...... .+++++...+.  +.+-...+.. .
T Consensus       229 ~~~l~~~a~~aLlPl~a~~~l--~~~a~~yG-ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~--~~~a~~~~~l-a  302 (524)
T PF05977_consen  229 LFNLFASAVWALLPLFARDVL--GGGASGYG-LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS--LLFALALLLL-A  302 (524)
T ss_pred             HHHHhhhHHHHhhhHHHHHHh--CCcHHHHH-HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH--HHHHHHHHHH-h
Confidence            1111    1223454421111  11122333 4567899999999988765433 23333332222  1111111111 1


Q ss_pred             CCcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          322 GPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       322 ~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                         +.++.|..++.+++.|.+.....+......-+.++++.|..+-.+.......|..+|+++.
T Consensus       303 ---l~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~  363 (524)
T PF05977_consen  303 ---LSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW  363 (524)
T ss_pred             ---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence               2344466677778889888777766666666677888888888887777777788877653

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.27  E-value=0.018  Score=65.44  Aligned_cols=105  Identities=16%  Similarity=0.011  Sum_probs=58.3

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcc-CchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYLLE-NEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~~~-~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      .+...+.+|-.+|..+..+...+ .++..+....+ ...+-++++..     ..+.+..++..+++|+..|........+
T Consensus       273 ~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~  346 (1146)
T PRK08633        273 YLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGAL-GLALSLFLLPT-----APSLASVLVLFFLFGFSAGLFIVPLNAL  346 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHH-HHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            44667778888888877655432 22222221110 11111111111     1244555677788888888776665566


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ..+..++++|..+..+.++...+|..+|..++
T Consensus       347 ~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~  378 (1146)
T PRK08633        347 IQFRAPEKELGKVLAANNFLQNVGMLLFLALT  378 (1146)
T ss_pred             HhhcCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            56666777777776666666666665554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.27  E-value=0.086  Score=54.22  Aligned_cols=21  Identities=10%  Similarity=0.290  Sum_probs=15.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL  295 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~  295 (390)
                      ....+++++..+||....+..
T Consensus       292 ~~~~~~~~~~~ig~~~~G~ls  312 (476)
T PLN00028        292 AIAASFGLMNLFARPAGGYLS  312 (476)
T ss_pred             HHHHHHHHHHHHHHhhhHHHH
Confidence            456678899999998776544

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.19  E-value=0.093  Score=52.47  Aligned_cols=97  Identities=11%  Similarity=-0.001  Sum_probs=53.4

Q ss_pred             hhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHH
Q 016425           59 VDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTV  137 (390)
Q Consensus        59 ~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~  137 (390)
                      ..++++.+.-++.+ ......+.+...+.....-.+.+|+..|.-+..+.++..++.+.....     +       .++.
T Consensus        41 ~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~-------~~~~  108 (426)
T PRK12307         41 MYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-----S-------GVIM  108 (426)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----h-------HHHH
Confidence            34555544333222 233345566666666666777777776555556666666655543332     1       2333


Q ss_pred             HHHHHHHhhhhhhhhhchhhhhc-CCCCHHH
Q 016425          138 TVGAVALSGLADALVQGGLIGAA-GELPDRY  167 (390)
Q Consensus       138 ~l~~~~~~g~~~~~~q~s~~~la-~~fp~~~  167 (390)
                      .++.-++.|++.+.......++. ..+|++.
T Consensus       109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~  139 (426)
T PRK12307        109 LTLSRFIVGMGMAGEYACASTYAVESWPKHL  139 (426)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH
Confidence            44556677877776665555544 4567654

>PRK03699 putative transporter; Provisional

Probab=97.14  E-value=0.1  Score=51.99  Aligned_cols=101  Identities=11%  Similarity=0.128  Sum_probs=51.8

Q ss_pred             HHHHHHhhhhhhhhhhhhhhc-cCchhH-HHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          276 LIAGYNVFDLVGKSLTAIYLL-ENEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~~-~~~~~l-~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      ...++.++..+||.+..+..- .++|+. ........+.+.++..  .     ++.+...+..+++|+..|-..+.....
T Consensus       246 ~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~G~~~~~~~~~~~~~  318 (394)
T PRK03699        246 LVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN--T-----DDPSHLLYAILGLGFFSSAIYTTIITL  318 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH--c-----CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778889999988765442 233433 3333333332222221  1     122344556777888776555555555


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIV  384 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~l  384 (390)
                      +++..+++..+..|.+. .+-.+|..+|..+
T Consensus       319 ~~~~~~~~~~~~~g~~~-~~~~~g~~i~p~~  348 (394)
T PRK03699        319 GSQQTKVASPKLVNFIL-TCGTIGTMLTFVV  348 (394)
T ss_pred             HHHHccCCCHHHHHHHH-HhhhHHHHHHHHH
Confidence            56554433333334333 3344566555543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.12  E-value=0.059  Score=53.74  Aligned_cols=119  Identities=9%  Similarity=0.073  Sum_probs=59.6

Q ss_pred             hhhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHH
Q 016425           36 LAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVAL  114 (390)
Q Consensus        36 ~~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~  114 (390)
                      +.-+.+.+....+.+....+....+.+.+++.-+.-+ ......+.+...+...+.-.+.+|+..|.-+..+..+..++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~   92 (406)
T PRK15402         13 LFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTC   92 (406)
T ss_pred             HHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            3444444444444445556666656566655433221 222335555566666666666777765544445555554444


Q ss_pred             HHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425          115 LVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR  166 (390)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~  166 (390)
                      +....     .+       .++..++.-.+.|++.+.......+... .+|++
T Consensus        93 ~~~~~-----~~-------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~  133 (406)
T PRK15402         93 LAILL-----AQ-------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA  133 (406)
T ss_pred             HHHHH-----Hc-------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh
Confidence            43222     11       1223334455667776666555554433 45653

>PRK10504 putative transporter; Provisional

Probab=97.06  E-value=0.094  Score=53.39  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=38.4

Q ss_pred             HHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          334 LLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       334 il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      +..++.|+..|-..+......++.++++++..+..+.++...+|..+|..++
T Consensus       358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~  409 (471)
T PRK10504        358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA  409 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            4455667777766666666667778888888888888888888888876654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.04  E-value=0.17  Score=53.54  Aligned_cols=102  Identities=14%  Similarity=0.092  Sum_probs=64.4

Q ss_pred             HHHhhhhhhhhhhhhhh--ccCchhH-HHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecC
Q 016425          279 GYNVFDLVGKSLTAIYL--LENEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAP  355 (390)
Q Consensus       279 ~FnvgD~iGR~~~~~~~--~~~~~~l-~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p  355 (390)
                      .++.|=..|-.+.....  .++.|+. ++.++...+|+-+....+.  +   |....+.+.++-|+.-|+....++..+.
T Consensus       357 ~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~--~---n~~~~i~~~~l~g~giG~~~~~~~~~~q  431 (599)
T PF06609_consen  357 PVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP--D---NKNAAIAFLVLAGFGIGGILVPAIVIAQ  431 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC--C---CcchHHHHHHHHHHhHHHHHHHHHHeeE
Confidence            45666666655432222  2344553 3445555555555444332  2   1122356677888999999999998887


Q ss_pred             CcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          356 KVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       356 ~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      -.+++++-..+..++...=.+|-.+|..+.
T Consensus       432 l~~p~~~ig~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  432 LIVPDEDIGTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             eeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            778888888888888888888877777653

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.94  E-value=0.13  Score=51.77  Aligned_cols=120  Identities=11%  Similarity=0.068  Sum_probs=75.0

Q ss_pred             chhhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHH
Q 016425           35 HLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVA  113 (390)
Q Consensus        35 ~~~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~  113 (390)
                      ......|++.|...    +..-...+.+++.+.-++.+ ......+.+...+.....-++.+|+..|.-+..++.+.++.
T Consensus         6 ~~~~~~f~~~G~~~----~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g   81 (410)
T TIGR00885         6 ALITSLFALWGFAN----DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG   81 (410)
T ss_pred             HHHHHHHHHHHHHH----HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            34667788888765    22223336667666443322 33444566666777777778889998888888888887776


Q ss_pred             HHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 016425          114 LLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY  167 (390)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~  167 (390)
                      .+.......  .       ..|+..++..++.|++.|..|.+.-.+.. ..|+++
T Consensus        82 ~~l~~~~~~--~-------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~  127 (410)
T TIGR00885        82 AFLFWPAAE--I-------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST  127 (410)
T ss_pred             HHHHHHHHh--h-------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH
Confidence            654322110  1       13455566677889999999987666554 345544

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=96.94  E-value=0.16  Score=51.54  Aligned_cols=93  Identities=8%  Similarity=-0.069  Sum_probs=51.9

Q ss_pred             hhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhc
Q 016425           75 FAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQG  154 (390)
Q Consensus        75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~  154 (390)
                      ..-.+.+...+.+++.-.+.+|+..|.=+..+.+++.++.+...................+...++.=++.|++.|....
T Consensus        60 ~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~  139 (479)
T PRK10077         60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASM  139 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhh
Confidence            33455666777777777777887766555666666655544332211000000011111223334555778888888888


Q ss_pred             hhhhhcC-CCCHHH
Q 016425          155 GLIGAAG-ELPDRY  167 (390)
Q Consensus       155 s~~~la~-~fp~~~  167 (390)
                      ...++.+ .+|++.
T Consensus       140 ~~~~~i~e~~~~~~  153 (479)
T PRK10077        140 LSPMYIAEIAPAHI  153 (479)
T ss_pred             HHHHHHHhhCChhh
Confidence            8887766 567664

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.92  E-value=0.058  Score=56.21  Aligned_cols=101  Identities=20%  Similarity=0.255  Sum_probs=59.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccC---chhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425          275 ILIAGYNVFDLVGKSLTAIYLLEN---EKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM  351 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~~~~---~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m  351 (390)
                      .+..+-++.|.+||....+.--+.   ++++..++++...+-.+++-.      .++-+..+....++|++-|+..++.-
T Consensus       337 ~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~------~~~~~~l~~~~~~fG~~~g~~~~l~~  410 (509)
T KOG2504|consen  337 FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF------ATTYVGLIVFSILFGFCVGSFSSLTP  410 (509)
T ss_pred             HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH------hccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346688999999999987765422   233444444443333322211      12225678888899999999998887


Q ss_pred             eecCCcCChhhHHHHhHHHHHHHHHHHHHH
Q 016425          352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAG  381 (390)
Q Consensus       352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~G  381 (390)
                      ....+-+..++-.-|-.+..++-.++..+|
T Consensus       411 ~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~g  440 (509)
T KOG2504|consen  411 VILVDLVGLEKLSNAYGLLLLFQGIGALVG  440 (509)
T ss_pred             HHHHHHcChhhcchHHHHHHHHhHHHHHcC
Confidence            555555555444444444444444444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=96.87  E-value=0.015  Score=59.41  Aligned_cols=103  Identities=13%  Similarity=0.046  Sum_probs=54.7

Q ss_pred             cchhhhhcccCCCcc-chhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhh
Q 016425           57 TAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGF  135 (390)
Q Consensus        57 ta~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f  135 (390)
                      .+.+.+++.+.-++- .......+.+...+.+...-.+.+|+..|.-+..+.++..+..+.++.... ...      ..+
T Consensus        50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~-~~~------~~~  122 (467)
T PRK09556         50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLG-SGS------VSL  122 (467)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHh-ccc------chH
Confidence            334555665543222 123344566666666777777788888666566666665555444443211 111      123


Q ss_pred             HHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425          136 TVTVGAVALSGLADALVQGGLIGAAG-ELPDR  166 (390)
Q Consensus       136 ~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~  166 (390)
                      ...++.-++.|++.|..-.....+.+ .+|++
T Consensus       123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  154 (467)
T PRK09556        123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRR  154 (467)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHcCcc
Confidence            33444555677776666555555554 46654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=96.81  E-value=0.16  Score=50.27  Aligned_cols=101  Identities=6%  Similarity=-0.229  Sum_probs=50.5

Q ss_pred             HHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecC
Q 016425          277 IAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAP  355 (390)
Q Consensus       277 ~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p  355 (390)
                      ..+-.++..+++....+.. ..++|+.......  +...-++...    +.++.+..++..+++|++.|......+.+..
T Consensus       246 ~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  319 (382)
T PRK11128        246 WSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAI--CGVVRWGLMG----STTALPWLIVIQILHCGTFTVCHLAAMRYIA  319 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3355567777766654432 2344443322221  1111111111    1234455677888899999988777776665


Q ss_pred             CcCChhhHHH-HhHHHHHHHHHHHHHHHHH
Q 016425          356 KVVQLQHAET-AGIVIVLFLVLGLAAGSIV  384 (390)
Q Consensus       356 ~~v~~~eke~-ag~~~~~~l~~Gl~~Gs~l  384 (390)
                      +. +++++.. .|....+....|..+|..+
T Consensus       320 ~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i  348 (382)
T PRK11128        320 AR-PGSEVIRLQALYSALAMGGSIAIMTVL  348 (382)
T ss_pred             HC-CHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55 3333333 2333334444555555544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=96.71  E-value=0.24  Score=49.78  Aligned_cols=99  Identities=14%  Similarity=-0.023  Sum_probs=47.6

Q ss_pred             cchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhh
Q 016425           57 TAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGF  135 (390)
Q Consensus        57 ta~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f  135 (390)
                      .+.+..++.+.-++.+ ....-.+.+...+.++..-.+.+|+..|.=+..+..+..+..+..+..     +       .+
T Consensus        29 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~-------~~   96 (412)
T TIGR02332        29 FAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA-----T-------GP   96 (412)
T ss_pred             HHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----c-------CH
Confidence            3445666655322222 222233444444445555555666665444445555554444433221     1       11


Q ss_pred             HHHHHHHHHhhhhhhhhhchhhhh-cCCCCHHH
Q 016425          136 TVTVGAVALSGLADALVQGGLIGA-AGELPDRY  167 (390)
Q Consensus       136 ~~~l~~~~~~g~~~~~~q~s~~~l-a~~fp~~~  167 (390)
                      ...++.-++.|++.+....+...+ +..+|++.
T Consensus        97 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  129 (412)
T TIGR02332        97 ESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF  129 (412)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH
Confidence            222344456677777666666554 44578653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.66  E-value=0.092  Score=51.11  Aligned_cols=103  Identities=13%  Similarity=0.046  Sum_probs=53.4

Q ss_pred             HHHHHHhhhhhhhhhhhhhhc-cCchhHHH-HHHHHHHH-HhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425          276 LIAGYNVFDLVGKSLTAIYLL-ENEKVAIG-GCFARLLF-FPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI  352 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~-lsl~R~if-iplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi  352 (390)
                      ....+.++..+++.+..+..- .++|+... ...+-.+. ++++.....+    .+.+..++..+++|+..|-..+....
T Consensus       260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~  335 (394)
T TIGR00883       260 VLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDS----GSFTLFFFLVLGLALIGGMYTGPMGS  335 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHhhhHHH
Confidence            456678888888877654332 23344222 22222221 1222111111    12234455667778888777777777


Q ss_pred             ecCCcCChhhHHHHhHH-HHHHHHHHHHHHH
Q 016425          353 LAPKVVQLQHAETAGIV-IVLFLVLGLAAGS  382 (390)
Q Consensus       353 ~~p~~v~~~eke~ag~~-~~~~l~~Gl~~Gs  382 (390)
                      ..++..++++|..+-.+ ..+....|..+|.
T Consensus       336 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p  366 (394)
T TIGR00883       336 FLPELFPTEVRYTGASLAYNLAGAIFGGFAP  366 (394)
T ss_pred             HHHHhCCccceeeEeeehhHhHHHHHhhHHH
Confidence            77777777777655433 3344444443443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00897 2A0118 polyol permease family

Probab=96.61  E-value=0.71  Score=46.04  Aligned_cols=105  Identities=15%  Similarity=0.082  Sum_probs=55.7

Q ss_pred             HHHHHHhhhhhhhhhhhhhhc-cCchhHH--HHHHHHHHH-HhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425          276 LIAGYNVFDLVGKSLTAIYLL-ENEKVAI--GGCFARLLF-FPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM  351 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~~-~~~~~l~--~lsl~R~if-iplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m  351 (390)
                      ....+.++..+|+....+..- .++|+..  ...++-.+. +.+...-..   ..++.+..++..+++|+..|.......
T Consensus       262 ~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~G~~~~~~~~~~~  338 (402)
T TIGR00897       262 IWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH---FGHSFAVALIIAIALGIFLAGYVPLAA  338 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc---cCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677899999998765443 2333322  111222221 111111000   112344555667777887765543322


Q ss_pred             eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                       ..+ +..+++|..+-.+......+|..+|..++
T Consensus       339 -~~~-~~~~~~~g~~~g~~~~~~~lg~~~gp~i~  370 (402)
T TIGR00897       339 -VFP-TLAPKHKGAAMSVLNLSAGLSAFLAPAIA  370 (402)
T ss_pred             -HHH-hhCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence             222 34556788887877877777777776554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=96.60  E-value=0.51  Score=46.76  Aligned_cols=98  Identities=10%  Similarity=-0.080  Sum_probs=58.2

Q ss_pred             HHHHHhhhhhhhhhhhh-hhccCchhHHH----HHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425          277 IAGYNVFDLVGKSLTAI-YLLENEKVAIG----GCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM  351 (390)
Q Consensus       277 ~~~FnvgD~iGR~~~~~-~~~~~~~~l~~----lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m  351 (390)
                      ..+..++..+++....+ .+..++|+++.    ...+|.+..+          +.++.+..+..+++.|++-|-+....|
T Consensus       246 ~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~q~l~g~~~~~~~~~~~  315 (382)
T TIGR00902       246 WGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG----------AIEAFPLIFLLQILHCGTFAVCHLAAM  315 (382)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH----------hHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777777766543 23344455332    2233333221          234556677889999999999999999


Q ss_pred             eecCCcCChhhHHHHhHH-HHHHHHHHHHHHHHHH
Q 016425          352 ILAPKVVQLQHAETAGIV-IVLFLVLGLAAGSIVA  385 (390)
Q Consensus       352 i~~p~~v~~~eke~ag~~-~~~~l~~Gl~~Gs~ls  385 (390)
                      .+..+. ++++|..+-.+ ...+...|..+|+.++
T Consensus       316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~  349 (382)
T TIGR00902       316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA  349 (382)
T ss_pred             HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887766 65555433222 3345566666666554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=96.59  E-value=0.22  Score=48.43  Aligned_cols=106  Identities=14%  Similarity=0.101  Sum_probs=56.0

Q ss_pred             HHHHhhcchh-hhhcccCCCc-cchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheeccc
Q 016425           51 PWNAFITAVD-YFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR  128 (390)
Q Consensus        51 pwn~~ita~d-yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~  128 (390)
                      -|..+....+ |+++.+.-++ ........+.+...+.....-.+.+|+..|..+..+..+..+..+..+...       
T Consensus        16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~-------   88 (366)
T TIGR00886        16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV-------   88 (366)
T ss_pred             HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh-------
Confidence            3444444455 4665553222 223444566667777777777777887766666667666666655433321       


Q ss_pred             CCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHH
Q 016425          129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRY  167 (390)
Q Consensus       129 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~  167 (390)
                      .    .++..++.-++.|++.+......--++..+|++.
T Consensus        89 ~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  123 (366)
T TIGR00886        89 Q----SYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKI  123 (366)
T ss_pred             h----hHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhh
Confidence            0    2233344455566665554433323334566653

>PRK03633 putative MFS family transporter protein; Provisional

Probab=96.47  E-value=0.59  Score=46.15  Aligned_cols=100  Identities=15%  Similarity=0.067  Sum_probs=53.5

Q ss_pred             HHHHHHhhhhhhhhhhhhhhc-cCchhHHHH-HHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          276 LIAGYNVFDLVGKSLTAIYLL-ENEKVAIGG-CFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~l-sl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      ...++.++..+||....+..- .++|+.... .+...+...++.     +    + ......++++|+..+-.....+..
T Consensus       240 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-----~----~-~~~~~~~~l~g~~~~~~~p~~~~~  309 (381)
T PRK03633        240 WMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-----S----Q-AAMAPALFILGAAGFTLYPVAMAW  309 (381)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-----h----h-HHHHHHHHHHHHHHHhHHHHHHHH
Confidence            456788899999987655432 344443221 221221111111     1    1 122344556677665455556665


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ..+..+++++..+......+..+|-.+|..++
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~  341 (381)
T PRK03633        310 ACEKVEHHELVAMNQALLLSYTVGSLLGPSFT  341 (381)
T ss_pred             HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666655555555566677777776544

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.35  E-value=1  Score=43.74  Aligned_cols=55  Identities=16%  Similarity=0.139  Sum_probs=32.2

Q ss_pred             hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      +...+..++.|+..|......+.+..+..+ +++..+..+.......|..+|..++
T Consensus       289 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~  343 (375)
T TIGR00899       289 WALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVG  343 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666788877766655555444433 4454555555555567777766554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03893 putative sialic acid transporter; Provisional

Probab=96.32  E-value=0.45  Score=48.63  Aligned_cols=103  Identities=13%  Similarity=0.077  Sum_probs=53.4

Q ss_pred             HHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCc
Q 016425           53 NAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGL  131 (390)
Q Consensus        53 n~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~  131 (390)
                      +......+++.+.+.-+.-+ ..+...+.+...+.....-.+.+|+..|.-+..+.++..+..+.....     +     
T Consensus        37 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-----  106 (496)
T PRK03893         37 VLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA-----P-----  106 (496)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----h-----
Confidence            33333446666655322211 223334455555555666666777765554555555555544433221     1     


Q ss_pred             chhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 016425          132 YDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY  167 (390)
Q Consensus       132 ~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~  167 (390)
                        .++..++..++.|++.+..++...++.. .+|++.
T Consensus       107 --~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~  141 (496)
T PRK03893        107 --GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL  141 (496)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence              2334455566778777766666555444 567654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.27  E-value=0.21  Score=57.01  Aligned_cols=60  Identities=13%  Similarity=0.032  Sum_probs=44.6

Q ss_pred             ccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          327 RTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       327 ~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      .+.|..++..+++|+..|..........-+..+++++..+..+.++...+|..+|+.+.-
T Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g  391 (1140)
T PRK06814        332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILA  391 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHH
Confidence            455666677788898888777666666666777888888888877888888777776643

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=96.21  E-value=0.6  Score=48.07  Aligned_cols=76  Identities=8%  Similarity=0.007  Sum_probs=40.1

Q ss_pred             HHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcc--hhhHHHHHHHHHhhhhhhhhhchhhhhcC-
Q 016425           85 FCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLY--DGFTVTVGAVALSGLADALVQGGLIGAAG-  161 (390)
Q Consensus        85 ~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~--~~f~~~l~~~~~~g~~~~~~q~s~~~la~-  161 (390)
                      +..++.-.+..|+..|.-+..+..++.++.+.....     + +.++.  ....+.++.=++.|++.|....+...+.+ 
T Consensus        72 ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~-----~-~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e  145 (490)
T PRK10642         72 LGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI-----P-SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAE  145 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc-----c-cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHH
Confidence            344445556777776666666777666665543331     1 00000  00112344455677777776666666655 


Q ss_pred             CCCHH
Q 016425          162 ELPDR  166 (390)
Q Consensus       162 ~fp~~  166 (390)
                      .+|++
T Consensus       146 ~~p~~  150 (490)
T PRK10642        146 YSPDR  150 (490)
T ss_pred             hCCCC
Confidence            46643

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=96.21  E-value=0.68  Score=45.26  Aligned_cols=78  Identities=18%  Similarity=0.064  Sum_probs=41.5

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchh
Q 016425           77 VAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL  156 (390)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~  156 (390)
                      ..+.+...+.....-.+.+|...|.-+..+.++..++.+.....     +       .++..++..++.|++.+......
T Consensus        33 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----~-------~~~~~~~~~~l~g~~~~~~~~~~  100 (377)
T PRK11102         33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----Q-------TIDQLIYMRFLHGLAAAAASVVI  100 (377)
T ss_pred             HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----c-------cHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666777765444445555555544433221     1       12333445566777777666555


Q ss_pred             hhhcC-CCCHH
Q 016425          157 IGAAG-ELPDR  166 (390)
Q Consensus       157 ~~la~-~fp~~  166 (390)
                      .++.. .+|++
T Consensus       101 ~~~~~~~~~~~  111 (377)
T PRK11102        101 NALMRDMFPKE  111 (377)
T ss_pred             HHHHHHhcCHH
Confidence            55544 45654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=96.21  E-value=0.63  Score=48.02  Aligned_cols=56  Identities=18%  Similarity=0.124  Sum_probs=44.2

Q ss_pred             hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      +.....+++.|+..|.........+-+.++++++..++.+..+.-.+|..+|..++
T Consensus       352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~  407 (495)
T PRK14995        352 WQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF  407 (495)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            44456778889998887766666666678889999999999999999988887654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=96.19  E-value=0.15  Score=51.44  Aligned_cols=136  Identities=18%  Similarity=0.208  Sum_probs=71.4

Q ss_pred             HHHHHHhHHHHHHhhhhceec---cceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhhhc--c-CchhHHHHHHH
Q 016425          235 GRVKWYGFGILLIYIVTLSIF---PGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL--E-NEKVAIGGCFA  308 (390)
Q Consensus       235 k~i~~~~~~~~l~f~vTl~vF---Pgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~--~-~~~~l~~lsl~  308 (390)
                      |.+|..+++-+++|++=+.+-   |-...+..+.   +.-..-..+.+|=++-+.|-.++.|..-  . .+|....+...
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~---s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~  328 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGF---SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM  328 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH
Confidence            368888999899998776432   2222221111   1111234478999999999999998763  3 34433222111


Q ss_pred             HHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCc------CChhhHHHHhHHHHHHHHHHHHHHH
Q 016425          309 RLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKV------VQLQHAETAGIVIVLFLVLGLAAGS  382 (390)
Q Consensus       309 R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~------v~~~eke~ag~~~~~~l~~Gl~~Gs  382 (390)
                      =.+++-+...- ..|.  .|.+...+..++.|+.         +|+|+-      .+-..|+.||+..+|.=..|=.+|+
T Consensus       329 ~~i~~~~~~~w-~~~~--~~~~l~~~~l~~iGf~---------IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga  396 (448)
T COG2271         329 LLITASLVLYW-LAPN--GSYLLDAILLFIIGFL---------IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGA  396 (448)
T ss_pred             HHHHHHHHHHH-cCCC--ccHHHHHHHHHHHHHH---------HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhH
Confidence            11221111110 1121  1324445555555643         455553      2334577777777776666666666


Q ss_pred             HHH
Q 016425          383 IVA  385 (390)
Q Consensus       383 ~ls  385 (390)
                      .++
T Consensus       397 ~~a  399 (448)
T COG2271         397 ALA  399 (448)
T ss_pred             Hhc
Confidence            554

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.08  E-value=0.8  Score=45.52  Aligned_cols=53  Identities=17%  Similarity=0.096  Sum_probs=28.8

Q ss_pred             HHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          332 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       332 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ..+..++.++..|........+..+ ..|++|+.+..+.......|..+|+.++
T Consensus       308 ~l~~~~l~~~~~g~~~~~~~~~~~~-~~p~~~g~~~~~~~~~~~lg~~~g~~l~  360 (393)
T PRK15011        308 LLGLQLLNAIYIGILGGIGMLYFQD-LMPGQAGSATTLYTNTSRVGWIIAGSLA  360 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555544443332222 2334566666666666777888777665

>PRK11043 putative transporter; Provisional

Probab=96.06  E-value=1.7  Score=42.97  Aligned_cols=110  Identities=7%  Similarity=-0.035  Sum_probs=53.9

Q ss_pred             hhhhhhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhh
Q 016425           45 GLGFLLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAV  123 (390)
Q Consensus        45 Gi~~L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~  123 (390)
                      +....+.++.+....+.+++.+.-++-+ ......+.+...+.....-.+.+|...|.-+..+..+..+..+....    
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----   90 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW----   90 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH----
Confidence            3344556777776666566655332222 22233445555566666666677776655444555444443333221    


Q ss_pred             eecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425          124 YIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR  166 (390)
Q Consensus       124 ~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~  166 (390)
                       .+       .++..++.-++.|++.+......-++.. .+|++
T Consensus        91 -~~-------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  126 (401)
T PRK11043         91 -VE-------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ  126 (401)
T ss_pred             -hc-------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH
Confidence             11       1233334445556655544443333333 56655

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=96.05  E-value=0.78  Score=46.63  Aligned_cols=82  Identities=18%  Similarity=0.120  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhch
Q 016425           76 AVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGG  155 (390)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s  155 (390)
                      ...+.+...+.++..-.+.+|+..|.-+..+.++..+..+..+...   .       ..+...++.-++.|++.+.....
T Consensus        82 ~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---~-------~~~~~l~~~r~~~G~~~~~~~~~  151 (465)
T TIGR00894        82 LSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA---G-------GGIALVVFCRVIQGLAQGSVSPA  151 (465)
T ss_pred             HHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH---H-------cCchHHHHHHHHHHHhcccchhh
Confidence            3455566666666666677777655545555554444443333210   0       01233444555677777776666


Q ss_pred             hhhhcC-CCCHHH
Q 016425          156 LIGAAG-ELPDRY  167 (390)
Q Consensus       156 ~~~la~-~fp~~~  167 (390)
                      ...+.+ .+|++.
T Consensus       152 ~~~~~~~~~~~~~  164 (465)
T TIGR00894       152 THKIIVKWAPPKE  164 (465)
T ss_pred             HHHHHHhcCCHHH
Confidence            666655 467654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=95.98  E-value=1.7  Score=43.01  Aligned_cols=113  Identities=11%  Similarity=0.020  Sum_probs=58.4

Q ss_pred             hHHHHHHhhhhhhHHHHhhcchhhhhcccCCCcc-chhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHH
Q 016425           38 YIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLV  116 (390)
Q Consensus        38 y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~  116 (390)
                      ....+..|++...    .....+.+++++.-++. .......+.+...+.....-.+.+|...|.-+..+..+..+..+.
T Consensus         9 ~~~~~~~~~~~~~----~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          9 ALGTFGLGMAEFG----IMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHhhHHH----HHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            3344455554333    22234455655533222 233444566677777777777788887655555665555554443


Q ss_pred             HHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425          117 VPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR  166 (390)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~  166 (390)
                      ...     .+       .++..++.-++.|++.+........+.+ .+|++
T Consensus        85 ~~~-----~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  123 (382)
T PRK10091         85 FTL-----SS-------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG  123 (382)
T ss_pred             HHH-----hC-------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH
Confidence            322     11       1233344456677776665544444433 45654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=95.97  E-value=1.2  Score=44.04  Aligned_cols=107  Identities=13%  Similarity=0.096  Sum_probs=55.7

Q ss_pred             hhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecc
Q 016425           49 LLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKG  127 (390)
Q Consensus        49 L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~  127 (390)
                      ....+....+.+.+.+++..++.+ ......+.+...+.....-.+.+|...|.-+..+.++..+..+....     .+ 
T Consensus        16 ~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~-----~~-   89 (392)
T PRK10473         16 PAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL-----AE-   89 (392)
T ss_pred             HHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH-----hC-
Confidence            344455566777666665433221 22333455555666666666777776544344444444444333211     11 


Q ss_pred             cCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 016425          128 RVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY  167 (390)
Q Consensus       128 ~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~  167 (390)
                         .   +...++.-++.|++.+..+....++.. .+|++.
T Consensus        90 ---~---~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~  124 (392)
T PRK10473         90 ---T---SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR  124 (392)
T ss_pred             ---c---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH
Confidence               1   122334455678887777776666655 466543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.84  E-value=0.9  Score=46.25  Aligned_cols=119  Identities=13%  Similarity=0.144  Sum_probs=88.2

Q ss_pred             ccchhhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHH
Q 016425           33 TFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVV  112 (390)
Q Consensus        33 ~~~~~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v  112 (390)
                      |+|.+.++|-++-.++-+-|+.+-...+|.++.|.+.+...++++.||+..+...+...++..|.-.|.-...+-+++.+
T Consensus        42 rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~i  121 (480)
T KOG2563|consen   42 RRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGI  121 (480)
T ss_pred             hHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHH
Confidence            56888899999999999999999999999999998667778999999999999999999999998888888888888876


Q ss_pred             HHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhh
Q 016425          113 ALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGA  159 (390)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l  159 (390)
                      .-.+=.+...=.++    +...+-+++.+    ...+|..|--++++
T Consensus       122 Ga~Ir~iss~p~v~----~~f~~~l~~~G----q~iaa~Aq~Fim~l  160 (480)
T KOG2563|consen  122 GAWIRLISSLPFVP----PLFRRPLTHTG----QSIAAAAQPFILGL  160 (480)
T ss_pred             HHHHhhhccCcccc----ccchhhhhHHh----HHHHHHhhhHhhcc
Confidence            65533222111111    11122244444    34556666667766

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=95.56  E-value=2.8  Score=41.65  Aligned_cols=25  Identities=16%  Similarity=0.153  Sum_probs=20.1

Q ss_pred             HHHHHhhhhhhHHHHhhcchhhhhc
Q 016425           40 IYFTLGLGFLLPWNAFITAVDYFSY   64 (390)
Q Consensus        40 ~f~llGi~~L~pwn~~ita~dyf~~   64 (390)
                      .|+.++...=+|.....++.+.|-+
T Consensus         3 ~~~~l~~~~~~~~~~~~~~~~~~l~   27 (402)
T PRK11902          3 AMLLLGFASGLPLALTSGTLQAWMT   27 (402)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3778888888999999999866644

>TIGR00896 CynX cyanate transporter

Probab=95.46  E-value=2.3  Score=41.38  Aligned_cols=93  Identities=13%  Similarity=0.068  Sum_probs=46.5

Q ss_pred             cchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhh
Q 016425           57 TAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGF  135 (390)
Q Consensus        57 ta~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f  135 (390)
                      ...+.+++.+.-+..+ ......+.+...+.....-++.+|+..|.-+..+..+..+..+..      ..+       .+
T Consensus        21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~------~~~-------~~   87 (355)
T TIGR00896        21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR------SAP-------GT   87 (355)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH------Hhc-------cH
Confidence            3445666655422222 233345555666666666677777776555555554433333221      111       12


Q ss_pred             HHHHHHHHHhhhhhhhhhchhhhhcCC
Q 016425          136 TVTVGAVALSGLADALVQGGLIGAAGE  162 (390)
Q Consensus       136 ~~~l~~~~~~g~~~~~~q~s~~~la~~  162 (390)
                      +..++..++.|++.+..+...-.+...
T Consensus        88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~  114 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIINVLLPSLIKR  114 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            223444556677777666555444443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.17  E-value=0.63  Score=48.36  Aligned_cols=114  Identities=17%  Similarity=0.177  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHhccchhHHhhhhhhhh-hhhhhhhccCCC--CcccchhHHHHHH--HHHHHhHHHHHHhhhhce
Q 016425          179 VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQA-VNEEKEEKGSLT--GSMWRSAVWHIVG--RVKWYGFGILLIYIVTLS  253 (390)
Q Consensus       179 ia~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~-~~e~~e~~~~~~--~~~~~~~~~~v~k--~i~~~~~~~~l~f~vTl~  253 (390)
                      .+++..+..+++|+.++..|..-...+.++++ ..|+.|++++..  ++.++..+++.+|  ++|++.++.++...+...
T Consensus       212 ~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~  291 (495)
T KOG2533|consen  212 EGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYG  291 (495)
T ss_pred             HHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhcccc
Confidence            34444556667777788777532222221111 001111111111  1134567777777  678888877777776653


Q ss_pred             ec---cceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhhh
Q 016425          254 IF---PGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYL  295 (390)
Q Consensus       254 vF---Pgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~  295 (390)
                      ++   |-+.....+.   +.-..-.+-..+-+++.+|-.++.+..
T Consensus       292 ~~~~lpl~l~~~~~~---s~~~a~~ls~~~~~~g~v~~i~ag~ls  333 (495)
T KOG2533|consen  292 FSYWLPLYLKSNGGY---SELQANLLSTPYDVGGIVGLILAGYLS  333 (495)
T ss_pred             HHHHHHHHHHcCCCc---ChHHhccccchHHhhhHHHHHHHHHHH
Confidence            32   3332210100   011111122345567777777666544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.15  E-value=0.27  Score=50.66  Aligned_cols=49  Identities=16%  Similarity=0.249  Sum_probs=28.2

Q ss_pred             HHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHH
Q 016425          335 LTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSI  383 (390)
Q Consensus       335 l~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~  383 (390)
                      ..+.||.+-=+.++.......|...|.++..+..++.+....+-+.|+.
T Consensus       394 ~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~  442 (488)
T KOG2325|consen  394 FIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPI  442 (488)
T ss_pred             hhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHH
Confidence            3445677666666666655566666666655555555555555555533

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=95.09  E-value=3.9  Score=40.61  Aligned_cols=115  Identities=10%  Similarity=0.091  Sum_probs=66.7

Q ss_pred             HHHHHHhhhhhhHHHHhhcc-hhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHH
Q 016425           39 IIYFTLGLGFLLPWNAFITA-VDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLV  116 (390)
Q Consensus        39 ~~f~llGi~~L~pwn~~ita-~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~  116 (390)
                      ....+.|+ +..++...++. .+-.+++|.-++.+ ....-.+.+...+.+...-++.+|...|.=+..+..+..++.+.
T Consensus        12 ~~~~~~~~-~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~   90 (393)
T PRK09705         12 LVLVLIGL-NMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALM   90 (393)
T ss_pred             HHHHHHHH-HcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            33445554 33355544443 46667666433322 23333455556666666667778777666666777777777665


Q ss_pred             HHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHH
Q 016425          117 VPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDR  166 (390)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~  166 (390)
                      ....     +       .+...++.-++.|++.+..+.....+... +|++
T Consensus        91 ~~~a-----~-------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~  129 (393)
T PRK09705         91 RELY-----P-------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQR  129 (393)
T ss_pred             HHHC-----c-------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcccc
Confidence            4432     1       12334556778888888888777777664 5533

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.08  E-value=1.6  Score=43.67  Aligned_cols=38  Identities=13%  Similarity=0.155  Sum_probs=22.2

Q ss_pred             cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHH
Q 016425          328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAET  365 (390)
Q Consensus       328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~  365 (390)
                      +.+..++..++.|+..+-.....+.+.++..+++.+..
T Consensus       314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~  351 (420)
T PRK09528        314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSAT  351 (420)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceee
Confidence            33444555666777666665555566666666555443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=95.06  E-value=2  Score=42.63  Aligned_cols=55  Identities=15%  Similarity=0.117  Sum_probs=29.4

Q ss_pred             cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHH-HHHHHHHHHHHHH
Q 016425          328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIV-IVLFLVLGLAAGS  382 (390)
Q Consensus       328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~-~~~~l~~Gl~~Gs  382 (390)
                      +.+...+..++.|+..+......+.+.++..+++.+..+... ..+...+|-.+|+
T Consensus       306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~  361 (396)
T TIGR00882       306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLS  361 (396)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHH
Confidence            444556667777877777666666666665554443332222 2344444544443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=95.04  E-value=3.4  Score=42.50  Aligned_cols=61  Identities=13%  Similarity=0.055  Sum_probs=51.9

Q ss_pred             ccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          327 RTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       327 ~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      .|.++.++.++++|+..+...........+..+++.|...-.+..++...|-.+|+.++-.
T Consensus       379 ~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~  439 (475)
T TIGR00924       379 TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATF  439 (475)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667788888899999999999999888888888899999888888888998888777543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=94.99  E-value=5.1  Score=41.28  Aligned_cols=89  Identities=7%  Similarity=-0.152  Sum_probs=51.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhh
Q 016425           74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ  153 (390)
Q Consensus        74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q  153 (390)
                      .+...+.+...+..++.-++.+|+..|.-+..+.++..++.++....    .+  ......+...++.-++.|++.|...
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~----~~--~~~~~~~~~~~~~r~l~G~~~g~~~  133 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS----PG--SSPKSVMATLCFWRFWLGVGIGGDY  133 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc----cC--cccchHHHHHHHHHHHHHHHHhhhh
Confidence            34455666666777777777777765444445555555544432221    11  1111224445566677888888877


Q ss_pred             chhhhhcC-CCCHHHH
Q 016425          154 GGLIGAAG-ELPDRYM  168 (390)
Q Consensus       154 ~s~~~la~-~fp~~~~  168 (390)
                      .....+.+ .+|++.-
T Consensus       134 ~~~~~~~~e~~p~~~R  149 (502)
T TIGR00887       134 PLSAIITSEFATKKWR  149 (502)
T ss_pred             HHHHHHHHHhcChhhH
Confidence            77777776 5776653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=94.76  E-value=4.7  Score=39.78  Aligned_cols=29  Identities=17%  Similarity=-0.051  Sum_probs=22.4

Q ss_pred             hHHHHHHhhhhhhHHHHhhcchhhhhccc
Q 016425           38 YIIYFTLGLGFLLPWNAFITAVDYFSYLY   66 (390)
Q Consensus        38 y~~f~llGi~~L~pwn~~ita~dyf~~~~   66 (390)
                      ++.++.++...=+|++......+++.+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~   31 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRED   31 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence            55666777777789999999987777654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00889 2A0110 nucleoside transporter

Probab=94.74  E-value=0.8  Score=46.20  Aligned_cols=108  Identities=15%  Similarity=0.094  Sum_probs=61.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHH-HHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCF-ARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI  352 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl-~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi  352 (390)
                      ....+..+++.+++....+.. ..++|+++..+. +-.+...++..  ..+. ..+.+..++..++.|+..|........
T Consensus       255 ~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~--~~~~-~~~~~~l~l~~~l~g~~~~~~~~~~~~  331 (418)
T TIGR00889       255 IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY--GDPE-YFGYALLFLSMIVYGCAFDFFNISGSV  331 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--cCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677788888887765433 234555433332 22221111111  1111 111223455677888888877777777


Q ss_pred             ecCCcCChhhHHHHhHHHH-HHHHHHHHHHHHHH
Q 016425          353 LAPKVVQLQHAETAGIVIV-LFLVLGLAAGSIVA  385 (390)
Q Consensus       353 ~~p~~v~~~eke~ag~~~~-~~l~~Gl~~Gs~ls  385 (390)
                      +..+..++++|..+-.+.. ....+|..+|..++
T Consensus       332 ~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~  365 (418)
T TIGR00889       332 FVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILS  365 (418)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            7777788888887766665 45566777776654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10054 putative transporter; Provisional

Probab=94.49  E-value=5.7  Score=39.56  Aligned_cols=38  Identities=13%  Similarity=0.160  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHH
Q 016425           79 YMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLV  116 (390)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~  116 (390)
                      +.+...+.+...-.+.+|+..|.-+..+..+..+..+.
T Consensus        52 ~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~   89 (395)
T PRK10054         52 ALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA   89 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence            34445555555566777777665455555554444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=94.40  E-value=6  Score=39.44  Aligned_cols=105  Identities=16%  Similarity=0.163  Sum_probs=52.7

Q ss_pred             HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425          276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA  354 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~  354 (390)
                      ...+..++-.+|..+..+.. ..++|+++..... +..+....+... +   ++.+..++.+++.|+..|-.........
T Consensus       262 ~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~-~~~~~~~~~~~~-~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~  336 (437)
T TIGR00792       262 MGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGIL-LMVLGYLIFFFA-G---SNLPLILVLIILAGFGQNFVTGLVWALV  336 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHHc-c---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456788888877654432 2334444333221 111111111111 1   2234445666777887776665555544


Q ss_pred             CCcCCh-------hhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          355 PKVVQL-------QHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       355 p~~v~~-------~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ++.++.       +.+..+..+.+++..+|..+|..++
T Consensus       337 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~  374 (437)
T TIGR00792       337 ADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV  374 (437)
T ss_pred             hhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            554432       2234455666677777777776654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00901 2A0125 AmpG-related permease

Probab=94.29  E-value=3  Score=40.45  Aligned_cols=41  Identities=17%  Similarity=0.186  Sum_probs=28.0

Q ss_pred             hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHH
Q 016425          330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVI  370 (390)
Q Consensus       330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~  370 (390)
                      +..+..+++.++..|......+.+-.+..++|+|...-.+.
T Consensus       310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  350 (356)
T TIGR00901       310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALL  350 (356)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            44455666778888888888887777777777765544433

>KOG4255 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.21  E-value=5.6  Score=39.01  Aligned_cols=137  Identities=16%  Similarity=0.167  Sum_probs=75.7

Q ss_pred             hhHHHHHHhhhhhhHHHHhhcchhhhhcccC-CCccchhhhhhHHHHHHHHHHHHHHhcCCCCc---ceEehhhHHHH-H
Q 016425           37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLYP-EASVDRIFAVAYMLVGLFCLVIIVFYAHKSDA---WVRINVGLGLF-V  111 (390)
Q Consensus        37 ~y~~f~llGi~~L~pwn~~ita~dyf~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~Ri~~~l~~~-~  111 (390)
                      ....-.++|+|+-..-|...-..+-.-+..| +-+.-++.++.-++.|+.-.++. .+.|..+.   .+-+++.+... .
T Consensus        12 t~llvalfG~gswa~vn~~wv~lp~lv~elpe~wslpsyl~vvVqla~lgpLi~t-llhk~~~~~i~~VPiif~ll~~a~   90 (439)
T KOG4255|consen   12 THLLVALFGMGSWAGVNGLWVELPLLVKELPEGWSLPSYLSVVVQLANLGPLIVT-LLHKGAPGTIPTVPIIFVLLLLAC   90 (439)
T ss_pred             HHHHHHHHccchHhhhcceeeehhHHHhhcCcccccchHHHHHHHHHcchhHHHH-HHHhhCCCcCCCCCchhHHHHHHH
Confidence            4444556677665555554333333333333 22344677777788887665553 33343332   22333333332 3


Q ss_pred             HHHHHHHHhhhheecccC--CcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHhhhHHH
Q 016425          112 VALLVVPVMDAVYIKGRV--GLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS  178 (390)
Q Consensus       112 v~~~~~~~~~~~~~~~~~--~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~~~s  178 (390)
                      ++-+.++.   .+.++..  ++.-. +--+...+...+.++.-..+++-.-+.+||.|.+++..|+|+|
T Consensus        91 v~~l~laf---lW~~ts~V~g~~hS-~afl~L~F~LAivdc~SnVtFLPFMs~lpp~fL~afFvG~GLS  155 (439)
T KOG4255|consen   91 VCQLGLAF---LWHDTSPVFGALHS-WAFLSLLFGLAIVDCTSNVTFLPFMSQLPPAFLNAFFVGMGLS  155 (439)
T ss_pred             HHHHHHHH---HHhcchhhhcCcch-HHHHHHHHHHHHHHhhccchhhhhhhhCChHHHHHHHHhccHH
Confidence            33333322   2332210  11101 1123445566778888889999999999999999999999998

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=94.19  E-value=6.7  Score=39.14  Aligned_cols=54  Identities=20%  Similarity=0.111  Sum_probs=33.9

Q ss_pred             HHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          332 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       332 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ..+..+++++..|-..........+.+++++|..+-.+..+....|..+|..++
T Consensus       300 ~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~  353 (400)
T PRK11646        300 LFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGG  353 (400)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccch
Confidence            344455666666544434444445566777888877777888777877776543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=94.16  E-value=7  Score=39.24  Aligned_cols=78  Identities=10%  Similarity=0.020  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhh
Q 016425           78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI  157 (390)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~  157 (390)
                      .+.+...+.+...-.+.+|+..|.-+..+..+..++.+....     .+       .+...++.-++.|++.+......+
T Consensus        59 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~-------~~~~l~~~r~l~Gi~~~~~~~~~~  126 (413)
T PRK15403         59 LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF-----TT-------SMTQFLIARFIQGTSICFIATVGY  126 (413)
T ss_pred             HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH-----cC-------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555556666666777777655455555555544443222     11       123344555667777776655555


Q ss_pred             hhcC-CCCHHH
Q 016425          158 GAAG-ELPDRY  167 (390)
Q Consensus       158 ~la~-~fp~~~  167 (390)
                      .... .+|++.
T Consensus       127 ~~~~~~~~~~~  137 (413)
T PRK15403        127 VTVQEAFGQTK  137 (413)
T ss_pred             HHHHHhcCHHH
Confidence            5443 566543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=94.13  E-value=6.8  Score=38.99  Aligned_cols=79  Identities=14%  Similarity=0.113  Sum_probs=50.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhh
Q 016425           73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV  152 (390)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~  152 (390)
                      ......|.++..+...+.-.+..|++.|.=+..+..+..+..+.....     .    .   .   ++.-++.|++.+..
T Consensus        41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-----~----~---~---~~~r~l~G~~~a~~  105 (393)
T PRK11195         41 PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-----I----H---P---LLAYGLVGIGAAAY  105 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-----H----H---H---HHHHHHHHHHHHHH
Confidence            445557777777777777778888887666666666665543322111     1    0   1   23335678999999


Q ss_pred             hchhhhhcC-CCCHH
Q 016425          153 QGGLIGAAG-ELPDR  166 (390)
Q Consensus       153 q~s~~~la~-~fp~~  166 (390)
                      .....++.. .+|++
T Consensus       106 ~pa~~a~i~~~~~~~  120 (393)
T PRK11195        106 SPAKYGILTELLPGE  120 (393)
T ss_pred             HHHHHHHHHHHcCHH
Confidence            888888876 47754

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=94.10  E-value=5.7  Score=39.37  Aligned_cols=105  Identities=10%  Similarity=0.083  Sum_probs=51.3

Q ss_pred             HHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccC
Q 016425           51 PWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV  129 (390)
Q Consensus        51 pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~  129 (390)
                      -|-.+-...+..++++.-++-+ ....-.+.+...+.++..-.+.+|+. |.|+..+.....+.... ..   . ..   
T Consensus         6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~g-rr~~~~~~~~~~~~~~~-~~---~-~~---   76 (368)
T TIGR00903         6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAF-KRWFLFGSLATFAAAAG-RL---L-DP---   76 (368)
T ss_pred             HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHH-HH---H-Hh---
Confidence            3555555555666655332222 22333445555555555666667765 33444333322222111 11   0 00   


Q ss_pred             CcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHH
Q 016425          130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRY  167 (390)
Q Consensus       130 ~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~  167 (390)
                       +  .+...++.-++.|++.+..-.....++..+|++-
T Consensus        77 -~--~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~  111 (368)
T TIGR00903        77 -F--NYEWLLACQLLAALGQPFLLNAFAPAASQIREER  111 (368)
T ss_pred             -c--cHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHH
Confidence             1  2344555566677777765555555666788654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=94.01  E-value=0.42  Score=47.64  Aligned_cols=110  Identities=12%  Similarity=0.040  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425          273 GIILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM  351 (390)
Q Consensus       273 ~~~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m  351 (390)
                      .-.+...+.++-.+|.....+..- .++|+.+....  +++....+++...+ ...+.+..++..++.|+..|-......
T Consensus        73 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~~  149 (481)
T TIGR00879        73 WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA--LLFVIGAILMGLAA-FALSVEMLIVGRVLLGIGVGIASALVP  149 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH--HHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHhHHH
Confidence            345566777888887777654332 34555444333  22222222221111 011224556677788998888877777


Q ss_pred             eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      .+..+..++++|..+..+...+...|..+|..++
T Consensus       150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            7778888889999999999999999999998887

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15075 citrate-proton symporter; Provisional

Probab=93.90  E-value=5.2  Score=40.29  Aligned_cols=32  Identities=13%  Similarity=0.239  Sum_probs=20.3

Q ss_pred             HHHHHHHhcCCCCcceEehhhHHHHHHHHHHH
Q 016425           86 CLVIIVFYAHKSDAWVRINVGLGLFVVALLVV  117 (390)
Q Consensus        86 ~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~  117 (390)
                      ..++.-.+.+|+..|.-+..+..+..+..+..
T Consensus        72 g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~  103 (434)
T PRK15075         72 GAIVLGAYIDRVGRRKGLIVTLSIMASGTLLI  103 (434)
T ss_pred             HHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence            34555567788887776667776666555543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=93.69  E-value=7.1  Score=40.29  Aligned_cols=77  Identities=13%  Similarity=0.098  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhh
Q 016425           78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI  157 (390)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~  157 (390)
                      ++..-.++.++-.-.+.+|...|.-+..+..+..++-+++|...-          ..++..+++=++.|++.|..-.++-
T Consensus        81 s~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----------~~~~~~~~~R~lqGl~~g~~~pa~~  150 (466)
T KOG2532|consen   81 SFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----------IGFYLLLVLRFLQGLGQGVLFPAIG  150 (466)
T ss_pred             HHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----------hcchhhHHHHHHhHHHHhHHHhhhh
Confidence            444455555555555667777777777788888888888888632          1233445666677877777777777


Q ss_pred             hhcCCCC
Q 016425          158 GAAGELP  164 (390)
Q Consensus       158 ~la~~fp  164 (390)
                      ++.+...
T Consensus       151 ~i~~~W~  157 (466)
T KOG2532|consen  151 SILAKWA  157 (466)
T ss_pred             ceeeeEC
Confidence            7777643

>PRK09952 shikimate transporter; Provisional

Probab=93.48  E-value=9.5  Score=38.54  Aligned_cols=33  Identities=6%  Similarity=0.045  Sum_probs=19.5

Q ss_pred             HHHHHHhhhchhhhhhheeecCCcCChhhHHHH
Q 016425          334 LLTCLLGLTNGYLTSVLMILAPKVVQLQHAETA  366 (390)
Q Consensus       334 il~~lfgltnGy~~t~~mi~~p~~v~~~eke~a  366 (390)
                      +..++.++.+|...+....+.++..+.+.|-.+
T Consensus       348 ~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg  380 (438)
T PRK09952        348 FSIMLANIAHDMVVCVQQPMFTEMFGASYRYSG  380 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHH
Confidence            344555777776665555555666666555433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=93.46  E-value=1.2  Score=44.81  Aligned_cols=106  Identities=10%  Similarity=0.081  Sum_probs=71.5

Q ss_pred             hhhHHHHhhcchhhhhcc-cCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheec
Q 016425           48 FLLPWNAFITAVDYFSYL-YPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIK  126 (390)
Q Consensus        48 ~L~pwn~~ita~dyf~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~  126 (390)
                      ..+.++...+...||.++ ..+++..+.+...+.++.++...+..++.+|+..+.-+..+..+.++..+...+...    
T Consensus       237 ~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~----  312 (428)
T PF13347_consen  237 QWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP----  312 (428)
T ss_pred             HHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh----
Confidence            445566656566666665 444455667777788888888888888999998777777888887777665544311    


Q ss_pred             ccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCC
Q 016425          127 GRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGEL  163 (390)
Q Consensus       127 ~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~f  163 (390)
                            ...+..++..++.|++.+.......++.+..
T Consensus       313 ------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~  343 (428)
T PF13347_consen  313 ------GSPWLVLILFILAGIGYGAFFVIPWAMLADV  343 (428)
T ss_pred             ------hhHHHHHHHHHHhHhhhcccccccccccccc
Confidence                  1224455667778888887777666666643

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=93.38  E-value=11  Score=39.02  Aligned_cols=59  Identities=8%  Similarity=-0.106  Sum_probs=44.1

Q ss_pred             ccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          327 RTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       327 ~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      -|.++.++..++.|+..+.+.-..+....+..+++.|..+..+..++...|-.+|+.++
T Consensus       380 vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~  438 (500)
T PRK09584        380 VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA  438 (500)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888999999999988888877877877887777766666666666655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=93.30  E-value=11  Score=38.89  Aligned_cols=58  Identities=12%  Similarity=0.079  Sum_probs=50.3

Q ss_pred             cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      +.|+.+...++.|+..+..+...+..+-+.++++.+..+..+..+...+|-.+|+.++
T Consensus       378 s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~  435 (489)
T PRK10207        378 SPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA  435 (489)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466777788889999999999999988989999999999998888899999998776

>PRK09848 glucuronide transporter; Provisional

Probab=93.23  E-value=1.6  Score=44.20  Aligned_cols=104  Identities=9%  Similarity=0.065  Sum_probs=50.2

Q ss_pred             hhHHHHhhcchhhhhc-ccCCCccchhh-hhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheec
Q 016425           49 LLPWNAFITAVDYFSY-LYPEASVDRIF-AVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIK  126 (390)
Q Consensus        49 L~pwn~~ita~dyf~~-~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~  126 (390)
                      ...+..+.+...||.+ .+.+++....+ .....+..++...+..++.+|.+.+.-+..+.++.++..+.+..     ..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~-----~~  315 (448)
T PRK09848        241 LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW-----VS  315 (448)
T ss_pred             HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-----cC
Confidence            3344444444555443 34332222212 11223334445555556777777665556666665555443321     11


Q ss_pred             ccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC
Q 016425          127 GRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE  162 (390)
Q Consensus       127 ~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~  162 (390)
                       +    ..++...+..++.|++.+.......++.+.
T Consensus       316 -~----~~~~~~~~~~~l~g~G~~~~~~~~~al~~~  346 (448)
T PRK09848        316 -V----WSLPVALVALAIASIGQGVTMTVMWALEAD  346 (448)
T ss_pred             -c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0    112333344556677777777766666554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=92.76  E-value=1.4  Score=45.23  Aligned_cols=106  Identities=11%  Similarity=-0.056  Sum_probs=48.4

Q ss_pred             HHHHhhcchhhhhcccCCC-ccchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccC
Q 016425           51 PWNAFITAVDYFSYLYPEA-SVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV  129 (390)
Q Consensus        51 pwn~~ita~dyf~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~  129 (390)
                      ..+...+...||.++.-+. +....+.....+..++...+..++.+|+..+.....+..+.++..+......  ...  .
T Consensus       246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~--~~~--~  321 (473)
T PRK10429        246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG--LAA--P  321 (473)
T ss_pred             HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh--ccC--c
Confidence            3343333344555443222 2222232233355566666666777787766555555554443333221110  111  1


Q ss_pred             CcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCC
Q 016425          130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAGEL  163 (390)
Q Consensus       130 ~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~f  163 (390)
                         ...+..++..++.|++.+..+....++.+..
T Consensus       322 ---~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~  352 (473)
T PRK10429        322 ---HNALLIVIAGILLNIGTALFWVLQVIMVADT  352 (473)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence               1122333444556666666665555555433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.74  E-value=1.1  Score=44.99  Aligned_cols=93  Identities=14%  Similarity=0.208  Sum_probs=62.3

Q ss_pred             hhhhhHHHHHHHHHHHHHH---hcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhh
Q 016425           74 IFAVAYMLVGLFCLVIIVF---YAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADA  150 (390)
Q Consensus        74 ~~~~~~~~~~l~~~~~~~~---~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~  150 (390)
                      ...+.+-.-.++..++++.   +.+|+.++.-++.|+.++..+.++..+     .+       .|...++.=.+.|++++
T Consensus       107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf-----g~-------sy~~l~vAR~LQgvgsA  174 (464)
T KOG3764|consen  107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF-----GN-------SYPMLFVARSLQGVGSA  174 (464)
T ss_pred             chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH-----cc-------hhHHHHHHHHHhhhhHH
Confidence            3344444444555555555   345777788888888887777665433     22       34456666778999999


Q ss_pred             hhhchhhhhcC-CCCHHHHHHHHhhhHHH
Q 016425          151 LVQGGLIGAAG-ELPDRYMQALVAGTAGS  178 (390)
Q Consensus       151 ~~q~s~~~la~-~fp~~~~~a~~~G~~~s  178 (390)
                      ....+.+++.+ .||++-..+-..|.+.+
T Consensus       175 ~~~tsglamlAd~f~~d~er~~vmGialg  203 (464)
T KOG3764|consen  175 FADTSGLAMLADVFPEDNERGSVMGIALG  203 (464)
T ss_pred             HHHhhhHHHHHHHcccchhhhHHHHHHHH
Confidence            99999999877 69988765555565544

>PRK11010 ampG muropeptide transporter; Validated

Probab=92.56  E-value=14  Score=38.07  Aligned_cols=117  Identities=11%  Similarity=0.032  Sum_probs=56.7

Q ss_pred             hHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccc--hhhhhhHHHHHHHHHHHHHHhcCCCC----cceE--ehhhHHH
Q 016425           38 YIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVD--RIFAVAYMLVGLFCLVIIVFYAHKSD----AWVR--INVGLGL  109 (390)
Q Consensus        38 y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~R--i~~~l~~  109 (390)
                      +..++++|...-+|+-......+.+.+.. |.+.+  ..++ ....+. ....+.-.+..|.+    -|.|  +..+.+.
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-g~~~~~ig~~~-~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~   90 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTVE-NIDLKTIGFFS-LVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLL   90 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHH
Confidence            56778888888888887777664443322 22211  1111 111111 23344444455542    1333  2244444


Q ss_pred             HHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425          110 FVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR  166 (390)
Q Consensus       110 ~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~  166 (390)
                      .+++...+..     .+  +  ...++...+..++.|++.+..+...-++.. .+|++
T Consensus        91 ~~~~~~~~a~-----~~--~--~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         91 LLVAIAAMGF-----LE--P--GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHH-----cC--C--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            4444433222     11  1  122344455555677777777666666665 46643

>PRK10489 enterobactin exporter EntS; Provisional

Probab=92.36  E-value=2  Score=42.92  Aligned_cols=79  Identities=15%  Similarity=0.055  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhh
Q 016425           78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI  157 (390)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~  157 (390)
                      .+.+..++..++..++.+|.+.+..+..+.++..+.++...     ..+       ......++..+.|++.+..+....
T Consensus       267 ~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~~~~g~~~~~~~~~~~  334 (417)
T PRK10489        267 AVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG-----LMP-------MWILAVLCLALFGYLSAISSLLQY  334 (417)
T ss_pred             HHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH-----ccc-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555556655555553322223344444443333221     111       122334555667777777666666


Q ss_pred             hhcC-CCCHHHH
Q 016425          158 GAAG-ELPDRYM  168 (390)
Q Consensus       158 ~la~-~fp~~~~  168 (390)
                      ++.. ..|+++-
T Consensus       335 ~~~~~~~p~~~~  346 (417)
T PRK10489        335 TLLQTQTPDEML  346 (417)
T ss_pred             HHHHhhCCHHHH
Confidence            6644 5787753

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=92.23  E-value=0.65  Score=44.10  Aligned_cols=107  Identities=15%  Similarity=0.056  Sum_probs=73.0

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhc-cCchh-HHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425          274 IILIAGYNVFDLVGKSLTAIYLL-ENEKV-AIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM  351 (390)
Q Consensus       274 ~~~~~~FnvgD~iGR~~~~~~~~-~~~~~-l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m  351 (390)
                      -.....+.+++.+++....+..- .++|+ +.+..+...+...+...+       ++.+..++..++.|+..|.......
T Consensus        37 ~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~  109 (352)
T cd06174          37 GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SSLWLLLVGRFLLGLGGGALYPAAA  109 (352)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHcccccccHhHH
Confidence            34566788888888877654332 33444 344444444433332222       2345566777888999888888888


Q ss_pred             eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      .+.++..++|||..+..+.......|..+|..++-.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  145 (352)
T cd06174         110 ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL  145 (352)
T ss_pred             HHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            888888888899999999998888888888876643

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00898 2A0119 cation transport protein

Probab=91.82  E-value=1.1  Score=46.05  Aligned_cols=112  Identities=17%  Similarity=0.139  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhh
Q 016425          270 DWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTS  348 (390)
Q Consensus       270 ~w~~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t  348 (390)
                      ++..-....+|.+|-.+|..+.+... ...+|+.+..+.  ++.....+.+..    -++.+..++.-++.|+..|....
T Consensus       126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~--~~~~i~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~  199 (505)
T TIGR00898       126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLST--LVTAVSGVLTAF----SPNYTVFLVFRLLVGMGIGGIWV  199 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHH--HHHHHHHHHHHH----cccHHHHHHHHHHHHhhccchHH
Confidence            45455667788899999888765543 245565544332  222211122211    23445567777888999999888


Q ss_pred             hheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          349 VLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       349 ~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      ....+..+..++++|..++.+...+...|..+|..++.+
T Consensus       200 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  238 (505)
T TIGR00898       200 QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF  238 (505)
T ss_pred             HHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999988999998888887654

>TIGR01272 gluP glucose/galactose transporter

Probab=91.70  E-value=10  Score=36.60  Aligned_cols=32  Identities=16%  Similarity=0.091  Sum_probs=26.6

Q ss_pred             hhHHHHHHHHHhhhhhhhhhchhhhhcCCC-CH
Q 016425          134 GFTVTVGAVALSGLADALVQGGLIGAAGEL-PD  165 (390)
Q Consensus       134 ~f~~~l~~~~~~g~~~~~~q~s~~~la~~f-p~  165 (390)
                      .|...++..++.|.+.+++|.+.=.+.+.. |+
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~   41 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPI   41 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCc
Confidence            467778888899999999999999888855 44

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=90.64  E-value=4.7  Score=39.77  Aligned_cols=79  Identities=9%  Similarity=-0.016  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhh
Q 016425           78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI  157 (390)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~  157 (390)
                      ...+..++.....-++.+|.+.+.-+..+.+...+..+..+..     +       ..+..+....+-|+.-++...+.+
T Consensus       248 ~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~-------~~~~~~~~q~l~g~~~~~~~~~~~  315 (382)
T TIGR00902       248 IGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-----E-------AFPLIFLLQILHCGTFAVCHLAAM  315 (382)
T ss_pred             HHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-----h-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666677788887766666666666665544321     1       224445556778888888888888


Q ss_pred             hhcCCCCHHHH
Q 016425          158 GAAGELPDRYM  168 (390)
Q Consensus       158 ~la~~fp~~~~  168 (390)
                      .+....|++..
T Consensus       316 ~~i~~~~~~~~  326 (382)
T TIGR00902       316 RYIAAQPGSEI  326 (382)
T ss_pred             HHHHhCCHhhH
Confidence            88887777553

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=90.42  E-value=21  Score=35.81  Aligned_cols=61  Identities=15%  Similarity=0.157  Sum_probs=42.0

Q ss_pred             ccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhH-------HHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          327 RTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHA-------ETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       327 ~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~ek-------e~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      .+.+..++...+.|+..|-........-++.++.+|.       .....+.++..-.|..+|..+..+
T Consensus       313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~  380 (428)
T PF13347_consen  313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL  380 (428)
T ss_pred             hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            4567778888899999888887777777777764432       234455666777777777765543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=90.38  E-value=1.3  Score=42.55  Aligned_cols=112  Identities=12%  Similarity=0.063  Sum_probs=71.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHH-HHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425          274 IILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGC-FARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM  351 (390)
Q Consensus       274 ~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m  351 (390)
                      -....++.++..++.....+.. ..++|+.+... ++..+..-+.......+.  .+.+..++..++.|+.+|.......
T Consensus        37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~  114 (365)
T TIGR00900        37 SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG--LNIWQVYVLAGILAIAQAFFTPAYQ  114 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777776654322 34556544333 333322222211111111  2445566777788999998888888


Q ss_pred             eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      .+.++..+++||..+..+...+..+|..+|..++-.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  150 (365)
T TIGR00900       115 AMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL  150 (365)
T ss_pred             HHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            888888888999999888888888888888776543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=90.20  E-value=25  Score=36.46  Aligned_cols=31  Identities=10%  Similarity=0.051  Sum_probs=21.6

Q ss_pred             hhhheeecCCcCChhhHHHHhHHHHHHHHHH
Q 016425          347 TSVLMILAPKVVQLQHAETAGIVIVLFLVLG  377 (390)
Q Consensus       347 ~t~~mi~~p~~v~~~eke~ag~~~~~~l~~G  377 (390)
                      +.+....++|-++++.|..|..+..+..-++
T Consensus       386 gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~  416 (485)
T KOG0569|consen  386 GPIPWFIGAELFPQSARSAAQSVATAVNWLS  416 (485)
T ss_pred             CchhHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence            5556667778888888888877766654443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=90.16  E-value=1.3  Score=44.35  Aligned_cols=139  Identities=13%  Similarity=-0.007  Sum_probs=74.8

Q ss_pred             HhHHHHHHhhhhceeccceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhh-hccCchhHHH-HHHHHHHHHhhhh
Q 016425          240 YGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIY-LLENEKVAIG-GCFARLLFFPLFL  317 (390)
Q Consensus       240 ~~~~~~l~f~vTl~vFPgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~-~~~~~~~l~~-lsl~R~ifiplf~  317 (390)
                      .....++..+....++|-+...-.+....+....-....++++++.+.+...... ...++|++.. ..++..+..   +
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~---~   91 (400)
T PRK11646         15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGF---A   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHH---H
Confidence            3344455555555556654211111111122223344556677765555443322 2234555433 333332222   2


Q ss_pred             hcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          318 GCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       318 ~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      .+..    .++.+..++..++.|+.+|..........++..++|+|..+..+.......|..+|..++
T Consensus        92 ~~~~----~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~  155 (400)
T PRK11646         92 TMAI----AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLG  155 (400)
T ss_pred             HHHH----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2211    123355666777889888877665555556777788898888888888888888887665

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=89.06  E-value=3.9  Score=40.84  Aligned_cols=101  Identities=13%  Similarity=0.168  Sum_probs=51.3

Q ss_pred             HHHHhhcchhhhhcccCC-CccchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccC
Q 016425           51 PWNAFITAVDYFSYLYPE-ASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV  129 (390)
Q Consensus        51 pwn~~ita~dyf~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~  129 (390)
                      .++...+...||.+..-+ .+....+...+.+..++...+..++.+|+..+..+..+..+.++..+....     ..   
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~-----~~---  308 (437)
T TIGR00792       237 AFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF-----AG---  308 (437)
T ss_pred             HHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-----cc---
Confidence            344433334555443222 222233444456666777777777788877655555665555544443221     11   


Q ss_pred             CcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC
Q 016425          130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAGE  162 (390)
Q Consensus       130 ~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~  162 (390)
                       .  ..+...+..++.|++.+..+....++.+.
T Consensus       309 -~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  338 (437)
T TIGR00792       309 -S--NLPLILVLIILAGFGQNFVTGLVWALVAD  338 (437)
T ss_pred             -h--hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             0  11223344455667777666666666553

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=88.66  E-value=2.7  Score=40.87  Aligned_cols=106  Identities=10%  Similarity=0.008  Sum_probs=64.6

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      .....+.++..+|.....+.. ..++|+.+....  ++.....+.+..    .++.+..++..++.|+..|...+.....
T Consensus        44 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~  117 (385)
T TIGR00710        44 MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGL--FIFALSSLGLAL----SNNIETLLVLRFVQAFGASAGSVISQAL  117 (385)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH--HHHHHHHHHHHH----HccHHHHHHHHHHHHcchhHHHHHHHHH
Confidence            445677777777777655433 234554333221  222111111111    1233455667778899888887777777


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      .++..++++|..+-.+.......|..+|..++-
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  150 (385)
T TIGR00710       118 VRDIYPGEELSRIYSILMPVLALAPAVAPLLGG  150 (385)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777778888888888877777877777766553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=88.60  E-value=1.8  Score=34.93  Aligned_cols=58  Identities=12%  Similarity=0.052  Sum_probs=45.4

Q ss_pred             chhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          329 EIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       329 d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      .+...+..++.|+..|........+.++..++++|..+..+.......|..+|..++-
T Consensus        51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  108 (141)
T TIGR00880        51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGG  108 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHH
Confidence            3455677788899999888888778888888888888888888887888777766543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=88.56  E-value=4.8  Score=40.08  Aligned_cols=105  Identities=12%  Similarity=0.031  Sum_probs=65.6

Q ss_pred             HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425          276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA  354 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~  354 (390)
                      ....+.++-.+|+....... ..++|+......  +++....+.+.    +.++.+..++.-++.|+.+|-.......+.
T Consensus        60 ~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~--~~~~~~~~~~~----~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i  133 (394)
T PRK10213         60 SVTVTAFVAMFASLFITQTIQATDRRYVVILFA--VLLTLSCLLVS----FANSFSLLLIGRACLGLALGGFWAMSASLT  133 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH--HHHHHHHHHHH----HHChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34567777777777765432 235555433332  22222222222    123445667777888999988877777777


Q ss_pred             CCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      ++..++++|..+-.+.....++|..+|..++-
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~  165 (394)
T PRK10213        134 MRLVPPRTVPKALSVIFGAVSIALVIAAPLGS  165 (394)
T ss_pred             HHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888877777777777777666553

>TIGR00893 2A0114 d-galactonate transporter

Probab=88.45  E-value=2.1  Score=41.25  Aligned_cols=105  Identities=13%  Similarity=0.040  Sum_probs=69.5

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-ccCchhHH-HHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAI-GGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI  352 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~-~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi  352 (390)
                      .....+.++..++.....+.. ..++|+.+ +..+...+...++..       .++.+..++..++.|+..|...+....
T Consensus        33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~  105 (399)
T TIGR00893        33 YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF-------AGAYVSLYILRVLLGAAEAPFFPGIIL  105 (399)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            456678888888877765433 23445433 222222222111111       124455667778889999988888888


Q ss_pred             ecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       353 ~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      +.++..++++|..+..+.......|..+|..++-
T Consensus       106 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  139 (399)
T TIGR00893       106 IVASWFPASERATAVSIFNSAQGLGGIIGGPLVG  139 (399)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            8888888899999988888888888888877654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=88.30  E-value=3.2  Score=42.97  Aligned_cols=148  Identities=13%  Similarity=0.049  Sum_probs=79.5

Q ss_pred             HHHHHHhHHHHHHhhhhceeccceEeeeec--cCCCchhHHHHHHHHHHhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 016425          235 GRVKWYGFGILLIYIVTLSIFPGYITEDVH--SEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLF  312 (390)
Q Consensus       235 k~i~~~~~~~~l~f~vTl~vFPgi~~~~~~--~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~~~~~~l~~lsl~R~if  312 (390)
                      |.+|...++-++..+..-.++|+--+...+  .+...+++-. .....++|=.++-...+++.-++.+.-+-+.+.|++.
T Consensus        34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~-viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~  112 (488)
T KOG2325|consen   34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGL-VIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA  112 (488)
T ss_pred             HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhH-HHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence            667778888888888888888886433222  1222344433 3456888888888877666554443234444555554


Q ss_pred             Hh--hhhhcccCCcccccc--hhHHHHHHHHhhhchhhhhhheeecC-CcCChhhHHHHhHHH--HHHHHHHHHHHHHHH
Q 016425          313 FP--LFLGCLHGPKFFRTE--IPVTLLTCLLGLTNGYLTSVLMILAP-KVVQLQHAETAGIVI--VLFLVLGLAAGSIVA  385 (390)
Q Consensus       313 ip--lf~~~~~~p~~~~~d--~~~~il~~lfgltnGy~~t~~mi~~p-~~v~~~eke~ag~~~--~~~l~~Gl~~Gs~ls  385 (390)
                      +.  +..+|...   .+++  |.+.+-=++.|+.+|-.+.+=-..+. ..++++-|..|+.-.  .++..+|-++|.+++
T Consensus       113 ~~g~llY~~l~~---~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  113 IIGNLLYLALAY---VPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             HHHHHHHHHHHh---cccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            43  23324321   2332  33333334668877655443322222 223445555555555  556666666666555


Q ss_pred             H
Q 016425          386 W  386 (390)
Q Consensus       386 ~  386 (390)
                      -
T Consensus       190 ~  190 (488)
T KOG2325|consen  190 P  190 (488)
T ss_pred             h
Confidence            3

>TIGR00895 2A0115 benzoate transport

Probab=88.29  E-value=3.9  Score=39.67  Aligned_cols=104  Identities=19%  Similarity=0.093  Sum_probs=65.6

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHH-HHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCF-ARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI  352 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl-~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi  352 (390)
                      .+...+.++..+|.....+..- .++|+.+.... +-.+.   .+.+..    .++.+..++..++.|+..|........
T Consensus        56 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~  128 (398)
T TIGR00895        56 FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVF---TLLCAL----ATNVTQLLILRFLAGLGLGGLMPNLNA  128 (398)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH---HHHHHH----ccchHHHHHHHHHHhcccccchhhHHH
Confidence            3456777777777766544332 34454433322 11111   111111    123344566777889988888777777


Q ss_pred             ecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       353 ~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      +..+..++++|..+..+......+|..+|..++
T Consensus       129 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  161 (398)
T TIGR00895       129 LVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA  161 (398)
T ss_pred             HHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence            777878888898888888888888888887765

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=88.20  E-value=2.4  Score=43.73  Aligned_cols=112  Identities=13%  Similarity=0.022  Sum_probs=75.2

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHH-HHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGC-FARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI  352 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi  352 (390)
                      .....+++|-.+|..+..+..- ..||+.+... +.-.+...+..+..... -..+.+..++.-++.|+..|-.......
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g~~~~~~~~  138 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSS-PKSVMATLCFWRFWLGVGIGGDYPLSAI  138 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            4567788888888888765442 4566544332 21222211111111100 0112345677778889999998888888


Q ss_pred             ecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       353 ~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      +..+..++++|..+..++..+..+|..+|..++.+
T Consensus       139 ~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~  173 (502)
T TIGR00887       139 ITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI  173 (502)
T ss_pred             HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98999999999999999999999999999887654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK12382 putative transporter; Provisional

Probab=87.88  E-value=2.8  Score=41.39  Aligned_cols=117  Identities=13%  Similarity=-0.057  Sum_probs=69.6

Q ss_pred             hhHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHH-HHHHHHHhhhhhcccCCccc-ccchhHHHHHHHHhhhchhh
Q 016425          270 DWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGC-FARLLFFPLFLGCLHGPKFF-RTEIPVTLLTCLLGLTNGYL  346 (390)
Q Consensus       270 ~w~~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~-~~d~~~~il~~lfgltnGy~  346 (390)
                      .+..-.....+.++..+++....+.. ..++|+.+... +...+..-.+..+...+... .+.+..++.-++.|+..|..
T Consensus        50 ~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  129 (392)
T PRK12382         50 NTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQL  129 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            44445567788888888777665433 34566654433 22222211222222212111 23233445556778888766


Q ss_pred             hhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          347 TSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       347 ~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      .+..+...++..+++||..+-.....+...|..+|..++-
T Consensus       130 ~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~  169 (392)
T PRK12382        130 LTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL  169 (392)
T ss_pred             HHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            6666666677788888988888888888888888777653

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=87.85  E-value=2.2  Score=42.80  Aligned_cols=105  Identities=12%  Similarity=0.127  Sum_probs=63.4

Q ss_pred             HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425          276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA  354 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~  354 (390)
                      ...+|.++=.+|.....+.. ..++|++....+  +++....+++...    ++.+..++.-++.|+.+|-.....+.+.
T Consensus        48 ~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~  121 (412)
T TIGR02332        48 AATLFYAAYVICGIPSNIMLAIIGARRWIAGIM--VLWGIASTATMFA----TGPESLYLLRILVGIAEAGFLPGILLYL  121 (412)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHH--HHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34556666666655544322 234555443333  2222222222221    2334556667788999887766666666


Q ss_pred             CCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      .+..++++|..+..+.......|..+|..++-
T Consensus       122 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~  153 (412)
T TIGR02332       122 TFWFPAYFRARANALFMIAMPVTMALGLILSG  153 (412)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77778888999888888888888888877653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=87.80  E-value=2.3  Score=41.17  Aligned_cols=105  Identities=14%  Similarity=0.020  Sum_probs=59.0

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      .....+.++..++.....+.. ..++|+......  ++.....+.+...+.   +.+..++..++.|+.+|.. ..+..+
T Consensus        41 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~i~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~-~~~~~~  114 (366)
T TIGR00886        41 NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL--LLLAIPCLWAGLAVQ---SYSVLLLLRLFIGIAGGSF-ASCMPW  114 (366)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH--HHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhchhh-HhHHHH
Confidence            446678888888887765543 234555433322  222221222211110   3345566777788887654 334445


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ..+..+++||..+..+...+...|..+|..++
T Consensus       115 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  146 (366)
T TIGR00886       115 ISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM  146 (366)
T ss_pred             HHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence            55666778888887777766666666665554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=87.02  E-value=2.3  Score=42.07  Aligned_cols=114  Identities=15%  Similarity=-0.001  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHH-HHHHHHhhhhhcccCCcc-cccchhHHHHHHHHhhhchhhhhh
Q 016425          273 GIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCF-ARLLFFPLFLGCLHGPKF-FRTEIPVTLLTCLLGLTNGYLTSV  349 (390)
Q Consensus       273 ~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl-~R~ifiplf~~~~~~p~~-~~~d~~~~il~~lfgltnGy~~t~  349 (390)
                      .-....++.++..++.....+.. ..++|+++..+. +..+.............+ ..+.+..++.-++.|+..|.....
T Consensus        53 ~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~  132 (399)
T PRK05122         53 AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTG  132 (399)
T ss_pred             HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcch
Confidence            34556788888888877765433 346666554443 332222211111111111 112233455667888888877666


Q ss_pred             heeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          350 LMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       350 ~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      .....++..++++|..+..+.......|..+|..++-
T Consensus       133 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  169 (399)
T PRK05122        133 SILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGV  169 (399)
T ss_pred             HHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHH
Confidence            6666677778888888877777777777777776653

>TIGR00891 2A0112 putative sialic acid transporter

Probab=87.00  E-value=4.1  Score=39.73  Aligned_cols=106  Identities=12%  Similarity=0.071  Sum_probs=65.9

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      ....++.+++.+|.....+.. ..++|+.+....  ++..-..+.+..    .++.+..++..++.|+..|-.......+
T Consensus        51 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~  124 (405)
T TIGR00891        51 SLISAALISRWFGALMFGLWGDRYGRRLPMVTSI--VLFSAGTLACGF----APGYITMFIARLVIGIGMGGEYGSSAAY  124 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHH----hccHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            345667777777777665433 245565544332  222211222211    2233445666778888887777777777


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      ..+..++++|..+..+.......|..+|..++-
T Consensus       125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~  157 (405)
T TIGR00891       125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYS  157 (405)
T ss_pred             HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888889998888888888888888776653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=86.84  E-value=5.6  Score=39.13  Aligned_cols=104  Identities=14%  Similarity=0.065  Sum_probs=54.4

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      ....++.+++.++.....+.. ..++|+.+....  ++.....+++..    .++.+..++..++.|+..|+... ....
T Consensus        58 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~-~~~~  130 (408)
T PRK09874         58 LVFSITFLFSAIASPFWGGLADRKGRKIMLLRSA--LGMGIVMVLMGL----AQNIWQFLILRALLGLLGGFVPN-ANAL  130 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHH--HHHHHHHHHHHH----HhhHHHHHHHHHHHHHhhhhHHh-HHHH
Confidence            456677778877776654332 234454433222  222111111111    12334455666777887776533 3334


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      .++..++++|..+..+.......|..+|..++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  162 (408)
T PRK09874        131 IATQVPRNKSGWALGTLSTGGVSGALLGPLAG  162 (408)
T ss_pred             HHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777766666666666666655443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=86.72  E-value=4.3  Score=40.07  Aligned_cols=77  Identities=6%  Similarity=-0.098  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhh
Q 016425           80 MLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGA  159 (390)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l  159 (390)
                      .+..+......-++.+|.+.+..+..+++...+.++....     .+       ..+...+..++.|++.++.......+
T Consensus       250 ~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~l~g~~~~~~~~~~~~~  317 (382)
T PRK11128        250 VVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS-----TT-------ALPWLIVIQILHCGTFTVCHLAAMRY  317 (382)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-----hh-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555556677766555566666655555443221     11       12334455667788888888888887


Q ss_pred             cCCCCHHHH
Q 016425          160 AGELPDRYM  168 (390)
Q Consensus       160 a~~fp~~~~  168 (390)
                      ....+++..
T Consensus       318 ~~~~~~~~~  326 (382)
T PRK11128        318 IAARPGSEV  326 (382)
T ss_pred             HHHCCHhhh
Confidence            766665543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=86.48  E-value=43  Score=34.58  Aligned_cols=76  Identities=11%  Similarity=0.086  Sum_probs=36.3

Q ss_pred             HHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCC
Q 016425           85 FCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELP  164 (390)
Q Consensus        85 ~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp  164 (390)
                      +..+..-.+.+|+..|.-+..+..+..+..+.+...    .+ +  ....|...++.-++.|++.+..-++.-.++..||
T Consensus        85 l~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a----~~-~--~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp  157 (462)
T PRK15034         85 LLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIA----VQ-N--PNTPFGIFIVIALLCGFAGANFASSMGNISFFFP  157 (462)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----Hc-c--cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCC
Confidence            334444555666665443444444444333333221    01 0  1123455566666777765544443334444688


Q ss_pred             HHH
Q 016425          165 DRY  167 (390)
Q Consensus       165 ~~~  167 (390)
                      ++-
T Consensus       158 ~~~  160 (462)
T PRK15034        158 KAK  160 (462)
T ss_pred             HhH
Confidence            763

>TIGR00805 oat sodium-independent organic anion transporter

Probab=86.38  E-value=29  Score=37.27  Aligned_cols=63  Identities=8%  Similarity=0.280  Sum_probs=41.5

Q ss_pred             cchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHH
Q 016425           57 TAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPV  119 (390)
Q Consensus        57 ta~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~  119 (390)
                      .+.+-++++|.-++.+ ..+...|.+.+.+..+...++..|.+.+.=+..+.+++.+..++..+
T Consensus        54 ~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~al  117 (633)
T TIGR00805        54 SSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSL  117 (633)
T ss_pred             hhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhC
Confidence            3345557767543333 34556788888888888888988877555566777777666555444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=85.73  E-value=3.4  Score=39.42  Aligned_cols=105  Identities=14%  Similarity=0.087  Sum_probs=70.8

Q ss_pred             HHHHHHhhhhhhhhhhhhhh-ccCchhH-HHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          276 LIAGYNVFDLVGKSLTAIYL-LENEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l-~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      ....+.++-.++........ ..++|+. .+..+++.+..-+..+.       ++.+..++..++.|+.+|........+
T Consensus        37 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~  109 (352)
T PF07690_consen   37 LFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-------SNFWLLLIARFLLGIGSGFFSPASNAL  109 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-------hhHHHHhhhcccccccccccccccccc
Confidence            45567777777776654432 2345554 33334444331111111       344566778888899998888888888


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      .++..+++||..+-.+......+|..+|..++-.
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  143 (352)
T PF07690_consen  110 IADWFPPEERGRAFGILSAGFSLGSILGPLLGGF  143 (352)
T ss_dssp             HHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhccccccchhhhhhhcccchhhh
Confidence            8888888999999999999999999999877643

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=85.65  E-value=5  Score=39.65  Aligned_cols=80  Identities=15%  Similarity=0.047  Sum_probs=39.4

Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhch
Q 016425           76 AVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGG  155 (390)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s  155 (390)
                      ...+.+...+..++.-++.+|...+..+..+++...++++....     .+    .   .+...+..++.|++.+..++.
T Consensus       261 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~~----~---~~~~~~~~~~~g~~~~~~~~~  328 (406)
T PRK11551        261 QIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA-----AP----S---FAGMLLAGFAAGLFVVGGQSV  328 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-----cC----c---HHHHHHHHHHHHHHHHhHHHH
Confidence            34455666677777777777765443333444433333332211     11    1   111223344556655556666


Q ss_pred             hhhhcC-CCCHHH
Q 016425          156 LIGAAG-ELPDRY  167 (390)
Q Consensus       156 ~~~la~-~fp~~~  167 (390)
                      .+++.. .+|++.
T Consensus       329 ~~~~~~~~~p~~~  341 (406)
T PRK11551        329 LYALAPLFYPTQV  341 (406)
T ss_pred             HHHHHHHHcchhh
Confidence            666554 456654

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=85.58  E-value=3.1  Score=43.07  Aligned_cols=108  Identities=13%  Similarity=0.108  Sum_probs=74.3

Q ss_pred             HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHH-HHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFA-RLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~-R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      ...+|-+|-.+|-++..+.- ...||..+..+.+ -++-..++.+|..    +++....++==++.|+..|-..+...+|
T Consensus        65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~----~~~~e~li~GR~i~Gl~~gl~~~~~pmy  140 (485)
T KOG0569|consen   65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS----APSFEMLILGRLIVGLACGLSTGLVPMY  140 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            35677888888887765433 2456644333221 1111222333332    3343444555667899999999999999


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      -.|..|++.|...|.+..++.+.|+.+|..+++.
T Consensus       141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~  174 (485)
T KOG0569|consen  141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLP  174 (485)
T ss_pred             HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccH
Confidence            9999899999999999999999999999888754

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=85.40  E-value=3.3  Score=45.33  Aligned_cols=106  Identities=11%  Similarity=-0.011  Sum_probs=68.0

Q ss_pred             HHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425          276 LIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA  354 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~  354 (390)
                      +..++.+|-.+|..+..+..- ..+|+.++...  +++....+++..    -++.+..++.-++.|+..|-....+..+.
T Consensus       207 l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l--il~~i~~ll~af----a~s~~~llv~R~l~G~g~g~~~p~~~~~i  280 (742)
T TIGR01299       207 LGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL--SVNGFFAFFSSF----VQGYGFFLFCRLLSGFGIGGAIPIVFSYF  280 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677888888877655432 35555433332  222211112211    12335566777788998887778888888


Q ss_pred             CCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      .+..++++|..+..++..+..+|..+|..++..
T Consensus       281 sE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~  313 (742)
T TIGR01299       281 AEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA  313 (742)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888899888888888888888888766543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=84.68  E-value=3.5  Score=41.77  Aligned_cols=103  Identities=14%  Similarity=0.076  Sum_probs=68.3

Q ss_pred             HHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecC
Q 016425          277 IAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAP  355 (390)
Q Consensus       277 ~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p  355 (390)
                      ...|.++..+|.....+.. ..++|+.+....  +++....+.|...    ++.+..++..++.|+..|........+.+
T Consensus        43 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~~~G~~~~~~~~~~~~~i~  116 (485)
T TIGR00711        43 ITSYMLANAISIPLTGWLAKRFGTRRLFLIST--FAFTLGSLLCGVA----PNLELMIIFRVIQGFGGGPLIPLSFSTLL  116 (485)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH--HHHHHHHHHHhCc----CCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            5567777777766654433 245565544333  2332222333322    33345567777889999988888888888


Q ss_pred             CcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          356 KVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       356 ~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      +..++++|..+..+......+|..+|..++
T Consensus       117 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  146 (485)
T TIGR00711       117 NIYPPEKRGRAMAIWGLTVLVAPALGPTLG  146 (485)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHhhhhhccH
Confidence            888899999988888888888888776654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11462 putative transporter; Provisional

Probab=84.28  E-value=11  Score=38.60  Aligned_cols=52  Identities=12%  Similarity=-0.066  Sum_probs=29.3

Q ss_pred             HHHHhhcchhhhhcccCCC-ccchhhhhhHHHHHHHHHHHHHHhcCCCCcceE
Q 016425           51 PWNAFITAVDYFSYLYPEA-SVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVR  102 (390)
Q Consensus        51 pwn~~ita~dyf~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R  102 (390)
                      ..+...+..-||-.++-+. +....+...+.+.+++...+..++.+|...+..
T Consensus       243 ~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~  295 (460)
T PRK11462        243 AVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTI  295 (460)
T ss_pred             HHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            3344444455655544332 222345556677777777777778777665433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=83.50  E-value=7.1  Score=39.19  Aligned_cols=104  Identities=9%  Similarity=0.041  Sum_probs=59.1

Q ss_pred             HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425          276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA  354 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~  354 (390)
                      ...+|.+|-.+|........ ..+||+++....  +++....+.|...    ++.+..++.-++.|+..|...+......
T Consensus        56 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~--~~~~~~~~~~~~a----~~~~~l~~~r~l~Gi~~~~~~~~~~~~~  129 (413)
T PRK15403         56 SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGA--LIFTLACAATLFT----TSMTQFLIARFIQGTSICFIATVGYVTV  129 (413)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHH--HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567777777777654322 235565444332  3444333333322    2334556666778988887666665555


Q ss_pred             CCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ++..+++++..+-.+......+|-.+|..++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg  160 (413)
T PRK15403        130 QEAFGQTKGIKLMAIITSIVLVAPIIGPLSG  160 (413)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666667776665555555555555555544

>TIGR01272 gluP glucose/galactose transporter

Probab=83.45  E-value=20  Score=34.47  Aligned_cols=77  Identities=12%  Similarity=-0.091  Sum_probs=44.5

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchh
Q 016425           77 VAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL  156 (390)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~  156 (390)
                      ..+.....+..++..++.+|++.+.-+..+..+.++..++...     .+    .    ......+.+.|++.+..-...
T Consensus       185 s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~-----~~----~----~~~~~~~~l~g~~~s~i~P~~  251 (310)
T TIGR01272       185 AYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL-----TH----G----YVAMWFVLALGLFNSIMFPTI  251 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-----cC----C----HHHHHHHHHHHHHHHHHHHHH
Confidence            3555566667777778888887544343444444433322111     11    1    112234557888999999998


Q ss_pred             hhhcCC-CCHH
Q 016425          157 IGAAGE-LPDR  166 (390)
Q Consensus       157 ~~la~~-fp~~  166 (390)
                      ++++.. +|++
T Consensus       252 ~s~a~~~~~~~  262 (310)
T TIGR01272       252 FSLALNALGRH  262 (310)
T ss_pred             HHHHHhhhhhh
Confidence            988875 5653

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10054 putative transporter; Provisional

Probab=83.40  E-value=6.4  Score=39.19  Aligned_cols=105  Identities=12%  Similarity=-0.036  Sum_probs=55.5

Q ss_pred             HHHHHHhhhhhhhhhhhhhh-ccCchhHH-HHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          276 LIAGYNVFDLVGKSLTAIYL-LENEKVAI-GGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~-~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      ....+.++..+++....+.. ..++|+.. +..++..+-..++.+       .++.+..++...+.|...+-........
T Consensus        48 ~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~  120 (395)
T PRK10054         48 AMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL-------VNNVTLVVLFFALINCAYSVFSTVLKAW  120 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666666665544332 23445533 333333332222211       1222333333334454444333334444


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      .++..++++|..+-.+.....++|..+|..++-.
T Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~  154 (395)
T PRK10054        121 FADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL  154 (395)
T ss_pred             HHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777888888778888888888888777654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=83.02  E-value=8.7  Score=38.70  Aligned_cols=105  Identities=11%  Similarity=-0.085  Sum_probs=51.3

Q ss_pred             HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425          276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA  354 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~  354 (390)
                      ....+.++-.+|.....+.. ..++|+......  ++.....+.+...|..-.+.+..++..++.|+..|-.........
T Consensus        66 ~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i  143 (438)
T TIGR00712        66 ALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGL--ILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTM  143 (438)
T ss_pred             HHHHHHHHHHHhhhccchhhhccCCceehHHHH--HHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            34566667666666654433 234444332221  121111111111121112222334555667877776544444444


Q ss_pred             CCcCChhhHHHHhHHHHHHHHHHHHHHH
Q 016425          355 PKVVQLQHAETAGIVIVLFLVLGLAAGS  382 (390)
Q Consensus       355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs  382 (390)
                      .+..++++|..+..+.......|..+|.
T Consensus       144 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~  171 (438)
T TIGR00712       144 VHWWSQSERGTIVSIWNCAHNIGGGIPP  171 (438)
T ss_pred             HHhcCcccchhHHHHHHHHHHhHhHHHH
Confidence            5556677888887776666666555544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=82.82  E-value=7.6  Score=40.16  Aligned_cols=113  Identities=16%  Similarity=0.018  Sum_probs=79.4

Q ss_pred             chhHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhh
Q 016425          269 KDWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLT  347 (390)
Q Consensus       269 ~~w~~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~  347 (390)
                      ++|.....-.+|.+|..+|-.+.+... ...||.++..+.  ++.+..=+.+..    -+|.+.++++-++-|+..+-..
T Consensus       116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~--~~~~i~~~~~a~----a~~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSL--LLFIIFGILTAF----APNYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHH--HHHHHHHHHHHH----hCcHHHHHHHHHHHHhhccchh
Confidence            456666777899999999998864333 246777666655  222221122222    2344667888899999999999


Q ss_pred             hhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          348 SVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       348 t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      +.+..+..+-+++++|..++.+..+....|...-...+++
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~  229 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYI  229 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999666666666665555554

>TIGR00806 rfc RFC reduced folate carrier

Probab=82.81  E-value=62  Score=33.74  Aligned_cols=76  Identities=11%  Similarity=-0.111  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhh
Q 016425           80 MLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGA  159 (390)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l  159 (390)
                      .....+.++..-.+..|+..|.=+..+.+...+..++++..     +       .+....++=++.|++.|..-+..--+
T Consensus        72 ~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-----~-------Sl~~L~i~R~llGvaEA~~~A~~syI  139 (511)
T TIGR00806        72 PYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-----T-------SVWHMQLMEVFYSVTMAARIAYSSYI  139 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----H-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444445566666555555555555444444331     1       23334455566777777666333344


Q ss_pred             cCCCCHHH
Q 016425          160 AGELPDRY  167 (390)
Q Consensus       160 a~~fp~~~  167 (390)
                      +..+|++.
T Consensus       140 ~~WfP~kE  147 (511)
T TIGR00806       140 FSLVPPSR  147 (511)
T ss_pred             HHHCCHHH
Confidence            55688754

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09669 putative symporter YagG; Provisional

Probab=82.51  E-value=30  Score=34.87  Aligned_cols=95  Identities=16%  Similarity=0.127  Sum_probs=45.6

Q ss_pred             chhhhhcc-cCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhH
Q 016425           58 AVDYFSYL-YPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFT  136 (390)
Q Consensus        58 a~dyf~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~  136 (390)
                      ...||.+. ..+.+....+.....+..++...+..++.+|...+.....+.++.+++...+..     ..  .   ...+
T Consensus       251 ~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~-----~~--~---~~~~  320 (444)
T PRK09669        251 ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF-----IP--P---SNVW  320 (444)
T ss_pred             hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-----hC--c---chHH
Confidence            33455433 223233333334455566666666666777776544444444333322221111     11  1   1123


Q ss_pred             HHHHHHHHhhhhhhhhhchhhhhcCC
Q 016425          137 VTVGAVALSGLADALVQGGLIGAAGE  162 (390)
Q Consensus       137 ~~l~~~~~~g~~~~~~q~s~~~la~~  162 (390)
                      ..++..++.|++.+..+....++.+.
T Consensus       321 ~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        321 LIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445566777777777776666654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=82.33  E-value=6.7  Score=38.63  Aligned_cols=103  Identities=15%  Similarity=0.038  Sum_probs=57.8

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      .....++++-.+|+....+.. ..++|+......  ++.....+++..    -++.+..++..++.|+..|-........
T Consensus        42 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~l~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~  115 (382)
T PRK10091         42 HMISYYALGVVVGAPIIALFSSRYSLKHILLFLV--ALCVIGNAMFTL----SSSYLMLAIGRLVSGFPHGAFFGVGAIV  115 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH--HHHHHHHHHHHH----hCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            346678888888888766543 345555443332  222222222222    1234556677778898877665555555


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSI  383 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~  383 (390)
                      ..+..++++|..+..+......+|..+|..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  145 (382)
T PRK10091        116 LSKIIKPGKVTAAVAGMVSGMTVANLLGIP  145 (382)
T ss_pred             HHHhCChHHhhHHHHHHHHHHHHHHHHhcc
Confidence            555566666666655555555555555443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=82.19  E-value=14  Score=37.90  Aligned_cols=30  Identities=13%  Similarity=0.123  Sum_probs=18.8

Q ss_pred             HHHHHHhhhhhhhhhchhhhhcCCCCHHHH
Q 016425          139 VGAVALSGLADALVQGGLIGAAGELPDRYM  168 (390)
Q Consensus       139 l~~~~~~g~~~~~~q~s~~~la~~fp~~~~  168 (390)
                      .+..++.+++.+..++..+++...+++++.
T Consensus       352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  381 (476)
T PLN00028        352 IVVMILFSIFVQAACGATFGIVPFVSRRSL  381 (476)
T ss_pred             HHHHHHHHHHHHHhhhhhcccCcccChhhc
Confidence            334445566666667777777777666653

>PRK03633 putative MFS family transporter protein; Provisional

Probab=82.13  E-value=7.2  Score=38.36  Aligned_cols=107  Identities=12%  Similarity=-0.005  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425          273 GIILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM  351 (390)
Q Consensus       273 ~~~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m  351 (390)
                      .-.....+.++..+|.....+..- ..+|+.+....  ++.......+..    .++.+...+..++.|+..|-......
T Consensus        43 ~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~--~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~  116 (381)
T PRK03633         43 VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLAS--LIFAAGCAGLGL----MVGFWSWLAWRFVAGIGCAMIWVVVE  116 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888888888877654332 33444333322  222222233222    23434555666777888776544333


Q ss_pred             eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ....+..++++|..+-.......+.|..+|..++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  150 (381)
T PRK03633        117 SALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV  150 (381)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2223444566777776776677777777777665

>PRK11663 regulatory protein UhpC; Provisional

Probab=82.10  E-value=9.3  Score=38.47  Aligned_cols=105  Identities=14%  Similarity=-0.038  Sum_probs=58.4

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      .....+.++-.+++....+.. ..++|+......  ++.....+++..    .++.+...+.-++.|+..|-.......+
T Consensus        62 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~l~~~~~l~g~~~g~~~~~~~~~  135 (434)
T PRK11663         62 LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL--IATGIINILFGF----SSSLWAFALLWVLNAFFQGWGWPVCAKL  135 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH--HHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            345567777777776655433 235555433332  222211112211    1222334445556677777554444555


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      ..+..++++|..+..+......+|..+|..++
T Consensus       136 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~  167 (434)
T PRK11663        136 LTAWYSRTERGGWWAIWNTAHNVGGALIPLVV  167 (434)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667778888888888777778877776543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=82.01  E-value=4.5  Score=46.02  Aligned_cols=109  Identities=16%  Similarity=0.061  Sum_probs=73.3

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-ccCchhHHH-HHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIG-GCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI  352 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~-lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi  352 (390)
                      +...+|.++=.++....++.. ..++|++++ ..+++.++..+..++...    ++.+..++..++.|+..|........
T Consensus        51 ~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~  126 (1146)
T PRK08633         51 IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL----GWFWLAFAVTFLLGAQSAIYSPAKYG  126 (1146)
T ss_pred             HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHHHhhchHHHh
Confidence            445567667666666554433 245565443 334555555444444321    23355667777889999988888888


Q ss_pred             ecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       353 ~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      +.++..++++|..+..+......+|..+|..++-.
T Consensus       127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~  161 (1146)
T PRK08633        127 IIPELVGKENLSRANGLLEAFTIVAILAGTALFSF  161 (1146)
T ss_pred             hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            88888888999999999888888888888777643

>PRK09669 putative symporter YagG; Provisional

Probab=81.71  E-value=61  Score=32.58  Aligned_cols=57  Identities=19%  Similarity=0.187  Sum_probs=36.9

Q ss_pred             hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHH-------HHhHHHHHHHHHHHHHHHHHHH
Q 016425          330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAE-------TAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke-------~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      +..++.+++.|+..|-...+.....++.++.+|.+       ..-.+.+++..+|..+|+.++-
T Consensus       320 ~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g  383 (444)
T PRK09669        320 WLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG  383 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566677889888877776666666666533321       2234666677888888876653

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=81.51  E-value=64  Score=32.66  Aligned_cols=72  Identities=26%  Similarity=0.238  Sum_probs=43.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccC--chh--HHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhh
Q 016425          275 ILIAGYNVFDLVGKSLTAIYLLEN--EKV--AIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVL  350 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~~~~--~~~--l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~  350 (390)
                      -+...+..|-++|-....+...++  +++  .+.+...=..|.-+. +  ..  +..+.+..-.-++++|+.||.+++-+
T Consensus       248 ~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii-~--a~--~~~~~~~~~~~~~l~G~g~G~f~vga  322 (403)
T PF03209_consen  248 RLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII-L--AG--PLGSPWLFRPGVFLLGLGNGLFTVGA  322 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH-H--HH--hcccchHHHHHHHHHHHhhhHHHHHH
Confidence            346678889999888877655432  222  233333222222111 1  22  35567778889999999999987655


Q ss_pred             e
Q 016425          351 M  351 (390)
Q Consensus       351 m  351 (390)
                      .
T Consensus       323 l  323 (403)
T PF03209_consen  323 L  323 (403)
T ss_pred             H
Confidence            4

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK03545 putative arabinose transporter; Provisional

Probab=80.10  E-value=11  Score=37.18  Aligned_cols=59  Identities=12%  Similarity=0.039  Sum_probs=44.1

Q ss_pred             cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      +.+...+.-++.|+.+|...+....+.++..+++||..+-.+.......|..+|..++-
T Consensus        96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~  154 (390)
T PRK03545         96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR  154 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence            44555666677898888777766666677778888988888888888888888776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	390
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.78
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.17
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.57
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.2
2xut_A	524	Proton/peptide symporter family protein; transport	96.85
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	96.42
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	94.89
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	93.42
2xut_A	524	Proton/peptide symporter family protein; transport	89.82
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	87.72
2cfq_A	417	Lactose permease; transport, transport mechanism,	87.32
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	84.89
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	83.92

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.78  E-value=2.4e-07  Score=91.18  Aligned_cols=321  Identities=12%  Similarity=0.069  Sum_probs=154.2

Q ss_pred             hhhhHHHHhhcchhhhhcccCCCc-cchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhhee
Q 016425           47 GFLLPWNAFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYI  125 (390)
Q Consensus        47 ~~L~pwn~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~  125 (390)
                      ...+.++.+....+++.+++ .+. ....+...+.+...+.....-.+.+|+..|.-+..+..+..+..++....... .
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~  116 (451)
T 1pw4_A           39 AYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-T  116 (451)
T ss_dssp             HHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-c
Confidence            33344444555556666655 332 22344456667777777777777788776655556666666655544331100 1


Q ss_pred             cccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHHH----HHHHhhhHHH----------------------
Q 016425          126 KGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRYM----QALVAGTAGS----------------------  178 (390)
Q Consensus       126 ~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~~----~a~~~G~~~s----------------------  178 (390)
                      +       .++..++.-++.|++.+.......++.+. +|++.-    .-...+.+++                      
T Consensus       117 ~-------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f  189 (451)
T 1pw4_A          117 S-------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL  189 (451)
T ss_dssp             S-------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCT
T ss_pred             c-------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            1       12334556677888888888888877664 664432    1122222222                      


Q ss_pred             -HHHHHHHH-HHHHHHHHhccchhHHhhhhhhhhhhhhhhhcc--CCCCcccchh--HHHHH--HHHHHHhHHHHHHhhh
Q 016425          179 -VGIVVMVI-CIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKG--SLTGSMWRSA--VWHIV--GRVKWYGFGILLIYIV  250 (390)
Q Consensus       179 -ia~~~~~~-~~~~y~~l~~~~~~~~~~~~~~~~~~e~~e~~~--~~~~~~~~~~--~~~v~--k~i~~~~~~~~l~f~v  250 (390)
                       +..++.++ .++.+..+++.|..+...+.  ++.+++++++.  +.+++....+  .++++  |..|...+..++..+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (451)
T 1pw4_A          190 YMPAFCAILVALFAFAMMRDTPQSCGLPPI--EEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL  267 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCSSTTTCCCSC--TTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCCHhhcCCCCh--hhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHH
Confidence             11111111 11222222222221100000  00000000000  0000011111  22332  3344444444443332


Q ss_pred             h---ceeccceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhhhc-c--CchhHHHHH-HHHHHHHhhhhhcccCC
Q 016425          251 T---LSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL-E--NEKVAIGGC-FARLLFFPLFLGCLHGP  323 (390)
Q Consensus       251 T---l~vFPgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~-~--~~~~l~~ls-l~R~ifiplf~~~~~~p  323 (390)
                      .   ...+|-+..+ .  ...+....-.....+.++..+|+.+..+..- .  ++|+.+... +.-. .+-++++... +
T Consensus       268 ~~~~~~~~~~~~~~-~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~  342 (451)
T 1pw4_A          268 RYGILDWSPTYLKE-V--KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV-TIATIVYWMN-P  342 (451)
T ss_dssp             HHHHHHHHHHHBTT-B--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH-HHHHHHTTSC-C
T ss_pred             HHHHHHHHHHHHHH-h--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH-HHHHHHHHHh-c
Confidence            2   2233443211 1  1112223334577888999999988765442 2  444433222 2111 1112222111 1


Q ss_pred             cccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHH-HHHHHHHHH
Q 016425          324 KFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVL-GLAAGSIVA  385 (390)
Q Consensus       324 ~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~-Gl~~Gs~ls  385 (390)
                      .  .+.+...+..+++|+..|........+..+..++++|..+-.+......+ |..+|..+.
T Consensus       343 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~  403 (451)
T 1pw4_A          343 A--GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  403 (451)
T ss_dssp             T--TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c--cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            1  23455567777888888777777667777888888898888888887777 887777653

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.17  E-value=9.5e-05  Score=72.20  Aligned_cols=107  Identities=10%  Similarity=0.014  Sum_probs=65.6

Q ss_pred             HHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCC
Q 016425           52 WNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVG  130 (390)
Q Consensus        52 wn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~  130 (390)
                      ++.+-...+++++.+.-++.+ ..+...+.+...+.....-.+.+|+..|.-+..+..+..+..++......  .+    
T Consensus        42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~----  115 (438)
T 3o7q_A           42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IM----  115 (438)
T ss_dssp             HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--TT----
T ss_pred             HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--cc----
Confidence            344445566677766433322 33444556666666666667778887766666777776666554422111  11    


Q ss_pred             cchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 016425          131 LYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY  167 (390)
Q Consensus       131 ~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~  167 (390)
                         .++..++.-++.|++.+..+....++.+ .+|++.
T Consensus       116 ---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~  150 (438)
T 3o7q_A          116 ---NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS  150 (438)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT
T ss_pred             ---cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh
Confidence               2445566778899999999988888777 456544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.57  E-value=0.00056  Score=68.00  Aligned_cols=58  Identities=12%  Similarity=0.021  Sum_probs=46.9

Q ss_pred             cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      +.++..+..+++|+..|........+..+..++++|..+..+......+|..+|+.+.
T Consensus       385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~  442 (491)
T 4aps_A          385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV  442 (491)
T ss_dssp             CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667778889999888888888888888888898888888888888888887764

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.20  E-value=0.0011  Score=63.38  Aligned_cols=102  Identities=17%  Similarity=0.136  Sum_probs=63.8

Q ss_pred             hhHHHHhhcchhhhhcccCCCcc-chhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecc
Q 016425           49 LLPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKG  127 (390)
Q Consensus        49 L~pwn~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~  127 (390)
                      .+.++.+....+.+.+++.-++. .......+.+...+.....-.+.+|...|.-+..+..+..+..+.....       
T Consensus        13 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------   85 (375)
T 2gfp_A           13 QMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------   85 (375)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------
Confidence            34455555555556655543222 2344456667777777777778888887777777777777666554432       


Q ss_pred             cCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC
Q 016425          128 RVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE  162 (390)
Q Consensus       128 ~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~  162 (390)
                           ..++..++..++.|++.+..+....++.+.
T Consensus        86 -----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~  115 (375)
T 2gfp_A           86 -----SSLTVLIAASAMQGMGTGVGGVMARTLPRD  115 (375)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----ccHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence                 123445566677888888887777776654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=96.85  E-value=0.014  Score=58.25  Aligned_cols=58  Identities=12%  Similarity=-0.061  Sum_probs=45.1

Q ss_pred             cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425          328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA  385 (390)
Q Consensus       328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls  385 (390)
                      +.++.++..+++|+..|........+..+..++++|..+..+......+|-.+|+.+.
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~  461 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN  461 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667778889999888888888888888888888887777777777777776654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=96.42  E-value=0.033  Score=54.92  Aligned_cols=132  Identities=10%  Similarity=0.053  Sum_probs=66.4

Q ss_pred             hhhHHHHHHhhh-hhhHHHHhh--cchhhhhcccCCCc-----c----chhhhhhHHHHHHHHHHHHHHhcCCCCcceEe
Q 016425           36 LAYIIYFTLGLG-FLLPWNAFI--TAVDYFSYLYPEAS-----V----DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRI  103 (390)
Q Consensus        36 ~~y~~f~llGi~-~L~pwn~~i--ta~dyf~~~~~~~~-----~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri  103 (390)
                      ..|.+.++.++| .+..|+.-+  .+.+++++.|...+     .    ...+.-.+.+...+..++.-.+..|+..|.=+
T Consensus         9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l   88 (491)
T 4gc0_A            9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL   88 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            344444444444 445776433  34566666553211     1    11233345556666666666677776655545


Q ss_pred             hhhHHHHHHHHHHHHHhhhheecc--cC----CcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHH
Q 016425          104 NVGLGLFVVALLVVPVMDAVYIKG--RV----GLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRY  167 (390)
Q Consensus       104 ~~~l~~~~v~~~~~~~~~~~~~~~--~~----~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~  167 (390)
                      ..+.+++.+.-+............  ..    ..-..+...++.=++.|++.|........+.+. .|++.
T Consensus        89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~  159 (491)
T 4gc0_A           89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI  159 (491)
T ss_dssp             HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh
Confidence            566666655544332110000000  00    001123444566677888888888888777775 56544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=94.89  E-value=0.084  Score=51.09  Aligned_cols=110  Identities=12%  Similarity=-0.058  Sum_probs=72.2

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL  353 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~  353 (390)
                      .+..++.++..++.....+.. ..++|+++....  ++.....+.+...|..-++.+..++..++.|+..|........+
T Consensus        66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~  143 (451)
T 1pw4_A           66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL--ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT  143 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH--HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHH
Confidence            446678888888877765433 245555433332  22221122211100002344566777888899999888888888


Q ss_pred             cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      .++..++++|..+..+......+|..+|..++-
T Consensus       144 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  176 (451)
T 1pw4_A          144 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL  176 (451)
T ss_dssp             HHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888899999999999999999988887763

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=93.42  E-value=0.13  Score=49.49  Aligned_cols=112  Identities=7%  Similarity=-0.085  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425          273 GIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM  351 (390)
Q Consensus       273 ~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m  351 (390)
                      .-.+...+.++..++.....+.. ..++|+.+....  ++.....+++... .+.++.+..++..++.|+..|-......
T Consensus        63 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~--~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~G~~~~~~~~~~~  139 (438)
T 3o7q_A           63 AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL--FLYALGAALFWPA-AEIMNYTLFLVGLFIIAAGLGCLETAAN  139 (438)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH--HHHHHHHHHHHhc-cccccHHHHHHHHHHHHhhHHHhhhhHH
Confidence            33556788888888888765533 345666543332  2222111111000 0123445667778888999999888888


Q ss_pred             eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      .+..+..++++|..+..+...+..+|..+|..++-.
T Consensus       140 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  175 (438)
T 3o7q_A          140 PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_dssp             HHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888898999998889999999999888877543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=89.82  E-value=0.39  Score=47.60  Aligned_cols=106  Identities=8%  Similarity=-0.100  Sum_probs=65.5

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-cc-CchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LE-NEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI  352 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~-~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi  352 (390)
                      ....++.++..+|.....+.. .. ++|+.+....  ++.....+++...+   .+.+..++..++.|+..|........
T Consensus        58 ~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~  132 (524)
T 2xut_A           58 DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS--LIYCVGHAFLAIFE---HSVQGFYTGLFLIALGSGGIKPLVSS  132 (524)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHH--HHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhccccchhHHH
Confidence            446678888888887765543 23 5665443332  22222122211111   13455667778889999988888888


Q ss_pred             ecCCcCChhhHHHHhHH---HHHHHHHHHHHHHHHH
Q 016425          353 LAPKVVQLQHAETAGIV---IVLFLVLGLAAGSIVA  385 (390)
Q Consensus       353 ~~p~~v~~~eke~ag~~---~~~~l~~Gl~~Gs~ls  385 (390)
                      +.++..++++|..+...   ...+..+|..+|..++
T Consensus       133 ~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~  168 (524)
T 2xut_A          133 FMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM  168 (524)
T ss_dssp             HHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888766666   6666777777776553

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=87.72  E-value=1.4  Score=43.06  Aligned_cols=107  Identities=10%  Similarity=0.017  Sum_probs=67.8

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhh-c-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425          274 IILIAGYNVFDLVGKSLTAIYL-L-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM  351 (390)
Q Consensus       274 ~~~~~~FnvgD~iGR~~~~~~~-~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m  351 (390)
                      -....++.++-.+|.....+.. . .++|+......  ++.....+.+..    -++.+..++..++.|+..|-......
T Consensus        57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~  130 (491)
T 4aps_A           57 ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG--VLIMLGHIVLAL----PFGASALFGSIILIIIGTGFLKPNVS  130 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH--HHHHHHHHHHHS----CCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH--HHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHhccchHH
Confidence            3556788888888888776543 3 35666543332  222222222222    13445667778888999998888888


Q ss_pred             eecCCcCChhh--HHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          352 ILAPKVVQLQH--AETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       352 i~~p~~v~~~e--ke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      .+..+..++++  |..+-.+...+..+|..+|..++-
T Consensus       131 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  167 (491)
T 4aps_A          131 TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG  167 (491)
T ss_dssp             HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH
Confidence            77777777766  555666666777777777766553

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=87.32  E-value=4.5  Score=38.77  Aligned_cols=54  Identities=17%  Similarity=0.191  Sum_probs=29.3

Q ss_pred             hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHH-HHHHHHHHHHHHHH
Q 016425          330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIV-IVLFLVLGLAAGSI  383 (390)
Q Consensus       330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~-~~~~l~~Gl~~Gs~  383 (390)
                      +..++..++.++..+........+.++..+++.|..+... ...+-.+|-.+|..
T Consensus       313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~  367 (417)
T 2cfq_A          313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV  367 (417)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence            4444555556666554444445566777777777665444 24444455444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=84.89  E-value=3.9  Score=39.72  Aligned_cols=111  Identities=12%  Similarity=0.111  Sum_probs=75.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccC-------------Cccc-ccchhHHHHHHHH
Q 016425          275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHG-------------PKFF-RTEIPVTLLTCLL  339 (390)
Q Consensus       275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~-------------p~~~-~~d~~~~il~~lf  339 (390)
                      .+...|.+|-.+|-.+..+.. ...||+.+..+.  +++...-+.|...             +..+ ++.+..++.=++.
T Consensus        59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~--~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~  136 (491)
T 4gc0_A           59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAA--VLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG  136 (491)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHH--HHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH--HHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence            345567777777776654433 346676555444  3333222222210             1112 2334456667788


Q ss_pred             hhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425          340 GLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF  387 (390)
Q Consensus       340 gltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~  387 (390)
                      |+..|-....+..+..+..++++|...+.+...+...|...+..++..
T Consensus       137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~  184 (491)
T 4gc0_A          137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF  184 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence            999999999999999999999999999999999999999999887754

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=83.92  E-value=1.3  Score=41.59  Aligned_cols=106  Identities=8%  Similarity=0.015  Sum_probs=69.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhc-cCchhH-HHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425          274 IILIAGYNVFDLVGKSLTAIYLL-ENEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM  351 (390)
Q Consensus       274 ~~~~~~FnvgD~iGR~~~~~~~~-~~~~~l-~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m  351 (390)
                      -.....+.++..++.....+..- .++|+. .+..+...+...+...       .++.+..++..++.|+..|...+...
T Consensus        38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~l~g~~~~~~~~~~~  110 (375)
T 2gfp_A           38 QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT-------TSSLTVLIAASAMQGMGTGVGGVMAR  110 (375)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-------hccHHHHHHHHHHHHHHHHhhhhhHH
Confidence            35577888888888887665432 344543 3333333332222211       12335566777788999888888777


Q ss_pred             eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      .+.++..++++|..+..+.......|..+|..++-
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  145 (375)
T 2gfp_A          111 TLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG  145 (375)
T ss_dssp             HHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            77777777788888888888888888888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	390
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.74
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.63
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	94.1
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	92.48

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=2.3e-07  Score=88.36  Aligned_cols=84  Identities=13%  Similarity=0.019  Sum_probs=49.8

Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhch
Q 016425           76 AVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGG  155 (390)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s  155 (390)
                      .-.+.+...+..++.-.+.+|...|.-+..+.++..++.++........        ..+...++.-++.|++.|.....
T Consensus        65 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~  136 (447)
T d1pw4a_          65 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--------SSIAVMFVLLFLCGWFQGMGWPP  136 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--------SSSSHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh--------hhHHHHHHHHHHHHHhhhhhhhH
Confidence            3455666666666666777777766656667776666665544332111        11233445556778787777777


Q ss_pred             hhhhcC-CCCHHH
Q 016425          156 LIGAAG-ELPDRY  167 (390)
Q Consensus       156 ~~~la~-~fp~~~  167 (390)
                      ..++.+ .+|++.
T Consensus       137 ~~~~i~~~~~~~~  149 (447)
T d1pw4a_         137 CGRTMVHWWSQKE  149 (447)
T ss_dssp             HHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHhhc
Confidence            776555 577654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=4.5e-05  Score=69.93  Aligned_cols=105  Identities=12%  Similarity=0.074  Sum_probs=62.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425          274 IILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI  352 (390)
Q Consensus       274 ~~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi  352 (390)
                      ........++..+|+....+... .++++......  ++....++...    +.++.+..++..+++|+..|........
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~  335 (417)
T d1pv7a_         262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAG--TIMSVRIIGSS----FATSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHH--HHHHHHHHHHH----TCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhhhhhhcccccccchhhhH--HHHHHhhhccc----cccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            34456667777777777654432 23333322221  12111111111    2345566778888899999888888888


Q ss_pred             ecCCcCChhhHHHHhHH-HHHHHHHHHHHHHHH
Q 016425          353 LAPKVVQLQHAETAGIV-IVLFLVLGLAAGSIV  384 (390)
Q Consensus       353 ~~p~~v~~~eke~ag~~-~~~~l~~Gl~~Gs~l  384 (390)
                      +..+..++++|..+-.+ .++...+|..+|+.+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~  368 (417)
T d1pv7a_         336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL  368 (417)
T ss_dssp             HHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888665443 455556666666654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.087  Score=48.19  Aligned_cols=109  Identities=12%  Similarity=-0.061  Sum_probs=67.2

Q ss_pred             HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425          276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA  354 (390)
Q Consensus       276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~  354 (390)
                      +..+|.++-.+|....++.. ..++|+.+....  ++.....+++...+....+.+..++.-++.|+..|-....+..+.
T Consensus        64 ~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  141 (447)
T d1pw4a_          64 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL--ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM  141 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH--HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            35567777777666654433 245666543332  111111111111111223445667777888888887777777777


Q ss_pred             CCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425          355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW  386 (390)
Q Consensus       355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~  386 (390)
                      .+..+++||..+..+...+..+|..+|..++.
T Consensus       142 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  173 (447)
T d1pw4a_         142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL  173 (447)
T ss_dssp             HTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHhhcccccccccccccchhhhhhhhhhh
Confidence            78888899999999988888888877766543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=0.11  Score=46.14  Aligned_cols=75  Identities=7%  Similarity=-0.002  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC
Q 016425           82 VGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG  161 (390)
Q Consensus        82 ~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~  161 (390)
                      ...+......++.+|...+.-+..+..+..++.+....     .+       ..+...+..++.|++.+.......++..
T Consensus       271 ~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~l~g~~~~~~~~~~~~~~~  338 (417)
T d1pv7a_         271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----AT-------SALEVVILKTLHMFEVPFLLVGCFKYIT  338 (417)
T ss_dssp             HHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-----CC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc-----cc-------ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444555555444444555444444443221     11       1234455566778888877777776665


Q ss_pred             -CCCHHHH
Q 016425          162 -ELPDRYM  168 (390)
Q Consensus       162 -~fp~~~~  168 (390)
                       .+|++..
T Consensus       339 ~~~~~~~~  346 (417)
T d1pv7a_         339 SQFEVRFS  346 (417)
T ss_dssp             HHSCGGGH
T ss_pred             HHCCHhHH
Confidence             5787654