Citrus Sinensis ID: 016441

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MASVAMASQCEEKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPRCDEPFPLGECSTFIFGFLPAGNKKSGGMSCNEYTGKRSRPLQENPLYSRYPHTNSTTSFLNIQRKRPKIVGGYFNSVREDFGRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRFENNVGYPLGESLISYERYMVEAPGRTLNSYIYLIDQLIRFRRLGLDSSYLLL
Secondary Structure (PSIPRED)
ccHHHHccHHHHHHcccccccccccEEEEEccccHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHcHHccccccEEEEEEccccccccccHHHHHHccccEEEEEEcccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccHHHHcccEEEEcccccEEEEEccccHHHHHHHHHHccccccEEEEccccHHHHHHHcHHHHHHHHHHHHcccEEEEEEEcHHHHHcccHccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHcccEEEEEEEccHHHcccccccccccccccccccccccEEEEEEEcccHHcccccccHHHccccccccccccccccccccccccccHHHHHccccccccccEEEEcccccccccccccccccccccccccccccEEEcccccccccccHHHHcccccHccHHHcccccccccccHHHHHHcHHHHcccccccccccHHHHHHHHHHHHHccccccHHcc
Coil and Loop (DISEMBL)
MASVAMASQCEEKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGsasnicassldsYDDVIQKYKRAKSNLDNLKKLGTCilhgvdattmelhpdlrtrkfdriifnfphagfygkednHLLIEMHRSLVRDFFrnssgmlrdggevhvshkttvpfsnwniKELAIGsslsliwcsefkiedypaynnkrgdgprcdepfplgecstfifgflpagnkksggmscneytgkrsrplqenplysryphtnsttsflniqrkrpkivggyFNSVredfgragncvgcsihefprfdisehsqtrliglplfsdfpgghyriyddcssnanDTLKRfennvgyplgesLISYERYMveapgrtlNSYIYLIDQLIRFRRlgldssylll
Flexible Loop (DISEMBL)
MASVAMASQCEEKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAksnldnlkkLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVShkttvpfsnwnIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPRCDEPFPLGECSTFIFGFLPAGNKKSGGMSCNEYtgkrsrplqenplysryphtnsttsflniqrkrpKIVGGYFNSVREDFGRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRFENNVGYPLGESLISYERYMVEAPGRTLNSYIYLIDQLIRFRrlgldssylll
Low Complexity Region (SEG)
MASVAMASQCEEKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPRCDEPFPLGECSTFIFGFLPAGNKKSGGMSCNEYTGKRSRPLQENPLYSRYPHTNSTTSFLNIQRKRPKIVGGYFNSVREDFGRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRFENNVGYPLGESLISYERYMVEAPGRTLNSYIYLIDQLIRFRRLGLDSSYLLL
Disordered region (IsUnstruct)
***************KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPRCDEPFPLGECSTFIFGFLPA************************************TSFLNIQRKRPKIVGGYFNSVREDFGRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRFENNVGYPLGESLISYERYMVEAPGRTLNSYIYLIDQLIRFRRLGLDSSYL**
Disordered Region (DISOPRED)
**********************SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGP*CDEPFPLGECSTFIFG*****************************L********************PKIVGGYFNS**ED*GRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRFENNVGYPLGESLISYERYMVEAPGRTLNSYIYLIDQLIRFRRLGLDSSYLLL
Disordered Region (DISEMBL)
**************EKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPRCDEPFPLGECSTFIFGFLPAGNKKSGGMSCNEYTGKRSRPLQENPLYSRYPHTNSTTSFLNIQRKRPKIVGGYFNSVREDFGRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRFENNVGYPLGESLISYERYMVEAPGRTLNSYIYLIDQLIRFRRLGLDSSYLLL
Disordered Region (DISPRO)
**SVAMASQCEEKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPRCDEPFPLGECSTFIFGFLPAG*******SC******RSRPLQENPLYSRYPHTNSTTSFLNIQRKRPKIVGGYFNSVREDFGRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRFENNVGYPLGESLISYERYMVEAPGRTLNSYIYLIDQLIRFRRLGLDSSYLLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASVAMASQCEEKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSxxxxxxxxxxxxxxxxxxxxxGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPRCDEPFPLGECSTFIFGFLPAGNKKSGGMSCNEYTGKRSRPLQENPLYSRYPHTNSTTSFLNIQRKRPKIVGGYFNSVREDFGRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRFENNVGYPLGESLISYERYMVEAPGRTLNSYIYLIDQLIRFRRLGLDSSYLLL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	389	2.2.26 [Sep-21-2011]
P0C8L4	209	Uncharacterized protein A	no	no	0.519	0.966	0.541	3e-57
O94480	282	UPF0617 protein C1919.13c	yes	no	0.465	0.641	0.327	1e-23
Q3UY23	622	Ferredoxin-fold anticodon	yes	no	0.457	0.286	0.29	8e-11
Q9BRP7	624	Ferredoxin-fold anticodon	yes	no	0.308	0.192	0.322	3e-10
P40493	336	UPF0617 protein YIL096C O	yes	no	0.496	0.574	0.237	5e-07

>sp|P0C8L4|Y4648_ARATH Uncharacterized protein At4g26485 OS=Arabidopsis thaliana GN=At4g26485 PE=4 SV=1

 Score =  222 bits (566), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 111/205 (54%), Positives = 143/205 (69%), Gaps = 3/205 (1%)

Query: 12  EKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKS 71
           E  EKWI+HYSS H+ILLVGEG+FSFSLCLA AFGSA NI A+SLDS D++  KY  A  
Sbjct: 2   EISEKWIRHYSSTHKILLVGEGNFSFSLCLASAFGSAMNITATSLDSEDELSIKYMDAVD 61

Query: 72  NLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAG--FYGKEDNHLLIEMHR 129
           N++ LK+ G  I H VD  TM     L  +++DRI+FNFPHAG  F+G+E +   IE H+
Sbjct: 62  NINILKRYGCDIQHEVDVHTMSFDNSLSLQRYDRIVFNFPHAGSRFFGRELSSRAIESHK 121

Query: 130 SLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAY 189
            LVR F  N+  ML + GE+H++HKTT PFS+W IK+L  G  L L+  S+F++  YP Y
Sbjct: 122 ELVRGFLENAKEMLEEDGEIHITHKTTYPFSDWGIKKLGKGEGLKLLKKSKFELSHYPGY 181

Query: 190 NNKRGDGP-RCDEPFPLGECSTFIF 213
             KRG G  R D+ FP+GECST++F
Sbjct: 182 ITKRGSGGRRSDDYFPVGECSTYMF 206

Arabidopsis thaliana (taxid: 3702)

>sp|O94480|YC6D_SCHPO UPF0617 protein C1919.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1919.13c PE=3 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 108/183 (59%), Gaps = 2/183 (1%)

Query: 15  EKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASN-ICASSLDSYDDVIQKYKRAKSNL 73
           E+++  +  N++ LL+GEG+FSF+  L L   S+   + A+S DS +D+ QKY  A   +
Sbjct: 48  ERYVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSSEGFVLATSYDSKEDLKQKYPDAAEYI 107

Query: 74  DNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVR 133
             ++  G  ++H +DAT + LH  L+T+KFD I +NFPH+G   K+ +  +++  + L+ 
Sbjct: 108 SKIEINGGKVMHEIDATKLHLHKKLKTQKFDTIFWNFPHSGKGIKDQDRNILDNQKMLL- 166

Query: 134 DFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKR 193
            FF+ S  +L + G + ++   T P++ WN+K LA  +  + +   +F    YP Y+++R
Sbjct: 167 AFFKASKFLLSEKGVIVITLAETKPYTLWNLKGLAKDAGYTSLMTEKFDSSFYPEYSHRR 226

Query: 194 GDG 196
             G
Sbjct: 227 TIG 229

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q3UY23|FDXA1_MOUSE Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog OS=Mus musculus GN=Fdxacb1 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 22/200 (11%)

Query: 26  QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILH 85
           ++LLVGEG+FSF+  L      + ++ A+    +   ++    A  NL  L++ G  +  
Sbjct: 5   RLLLVGEGNFSFAASLIDGLDPSVSVTATGFQ-HRAALEGDPVALENLKRLRERGVEVRF 63

Query: 86  GVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRD 145
           GVD T +        R FDRI FNFPH G          +  +R L+  FF++ + +L  
Sbjct: 64  GVDCTQLSHALPADDRDFDRIYFNFPHCGRKAG------VAKNRELLAKFFQSCADVLAK 117

Query: 146 GGEVHVS----------HKTTVPFSN-WNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRG 194
            GEVHV+           K    + N W +  +A      L     F  E  P Y   + 
Sbjct: 118 AGEVHVTLCRGQGGTPADKPQREWHNSWQVVAMAALGGFILSDVCPFSCEAVPGY---KC 174

Query: 195 DGPRC-DEPFPLGECSTFIF 213
            G R  D PF +    T+IF
Sbjct: 175 TGYRSQDRPFHIEGALTYIF 194

Mus musculus (taxid: 10090)

>sp|Q9BRP7|FDXA1_HUMAN Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Homo sapiens GN=FDXACB1 PE=2 SV=3

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 7/127 (5%)

Query: 26  QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILH 85
           ++LLVGEG+FSF+  L+     ++ + A+ L    + + +   A  NL  L++ G  +  
Sbjct: 5   RLLLVGEGNFSFAAALSETLDQSTQLTATCLQRPAE-LARDPLAWENLQCLRERGIDVRF 63

Query: 86  GVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRD 145
           GVD T +    +L  R+FD+I F FPH G          +  +R L+  FF++ + +L +
Sbjct: 64  GVDCTQLADVFELHEREFDQIYFIFPHCGRKAG------VAKNRELLAKFFQSCADVLAE 117

Query: 146 GGEVHVS 152
            GEVHV+
Sbjct: 118 EGEVHVA 124

Homo sapiens (taxid: 9606)

>sp|P40493|YIJ6_YEAST UPF0617 protein YIL096C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL096C PE=1 SV=1

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 55/248 (22%)

Query: 21  YSSNHQILLVGEGDFSFSLCLALA-FGSASNICASSLD-SYDDVIQKYKRA-KSNLDNLK 77
           +  +  ++L GEGDFSF+  +    +  + N+  +S D S +++  KY    + N   LK
Sbjct: 68  FEKDETLMLCGEGDFSFARSIVEQNYIESDNLIITSYDNSVNELKLKYPHTFEENYQYLK 127

Query: 78  KLGTCILHGVDATTM----------------ELHPDLR--TRKFDRIIFNFPHAGFYGKE 119
            L   I   +D T +                    D R   +    I+FNFPH G  G +
Sbjct: 128 DLNIPIFFQIDVTKLVKSFKISKNNTWFKIINRLSDHRWGNKPLQNIVFNFPHNG-KGIK 186

Query: 120 DNHLLIEMHRSLVRDFFRNS-------------------------------SGMLRDG-G 147
           D    I  H+ L+ +FF+NS                                 +  +G G
Sbjct: 187 DQERNIREHQDLIFNFFQNSLQLFNLINTKIQNDTLRYTQGYDLNEDTPQAKKLTAEGYG 246

Query: 148 EVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPR-CDEPFPLG 206
            + +S     P+ +W IK LA  + L+L   S+F+ E++P Y+++R +  +   +P    
Sbjct: 247 NIILSLFDGEPYDSWQIKLLAKKNGLTLSRSSKFQWENFPGYHHRRTNSEQDTTKPAKER 306

Query: 207 ECSTFIFG 214
           +   +IF 
Sbjct: 307 DARFYIFS 314

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
224074444	413	predicted protein [Populus trichocarpa]	0.917	0.864	0.510	1e-90
359494364	364	PREDICTED: uncharacterized protein At4g2	0.856	0.914	0.505	3e-89
359494357	355	PREDICTED: uncharacterized protein At4g2	0.832	0.912	0.494	1e-85
356569597	576	PREDICTED: uncharacterized protein LOC10	0.719	0.486	0.546	2e-84
296090026	516	unnamed protein product [Vitis vinifera]	0.856	0.645	0.471	4e-84
224122324	243	predicted protein [Populus trichocarpa]	0.593	0.950	0.632	2e-78
357460297	467	hypothetical protein MTR_3g061070 [Medic	0.514	0.428	0.665	2e-75
297853298	480	hypothetical protein ARALYDRAFT_892585 [	0.544	0.441	0.641	5e-74
334183353	515	uncharacterized protein [Arabidopsis tha	0.519	0.392	0.668	4e-73
296090024	383	unnamed protein product [Vitis vinifera]	0.544	0.553	0.599	9e-73

>gi|224074444|ref|XP_002304372.1| predicted protein [Populus trichocarpa] gi|222841804|gb|EEE79351.1| predicted protein [Populus trichocarpa]

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 194/380 (51%), Positives = 240/380 (63%), Gaps = 23/380 (6%)

Query: 11  EEKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAK 70
           EE +EKW+KHYSSNHQILLVG+GDFSFSL LAL+FGS SNI ASSLD+ D +I+KYK+AK
Sbjct: 13  EEDKEKWLKHYSSNHQILLVGDGDFSFSLSLALSFGSGSNIVASSLDTSDVLIKKYKKAK 72

Query: 71  SNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRS 130
           SNL+NL KL    LHGVDAT M+LHPDLR RKFDRIIFNFPHAGF+GKEDN  LIE HR+
Sbjct: 73  SNLENLAKLKASTLHGVDATKMKLHPDLRMRKFDRIIFNFPHAGFHGKEDNIKLIEKHRN 132

Query: 131 LVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYN 190
           LVR FFRN+  MLR  GE+HV+HKTT PF +WNI+ELA  +SL LI   EFKIEDYP YN
Sbjct: 133 LVRGFFRNAKSMLRADGEIHVNHKTTAPFCHWNIEELARRNSLVLIERVEFKIEDYPGYN 192

Query: 191 NKRGDGPRCDEPFPLGECSTFIFGFLPAGNKKSGGMSCNEYTGKRSRPLQENPLY----- 245
           NKRGD  RCDEPFPLGECSTF F F  A  K S   S   + GKR   L +NP+      
Sbjct: 193 NKRGDSNRCDEPFPLGECSTFKFRFSHAA-KMSKATSHLGFAGKRCPQLHDNPIKMYHQP 251

Query: 246 SRYPHTNSTTSFLNIQRKRPKIVGGYFNSVREDFGRAGNCVGCS----IHEFPRFDISEH 301
           S + H +   +  N + ++P +   + ++  +       C   +    +H  P      +
Sbjct: 252 SLFNHMHPQPTVFNYKHRQPTL---FKHTHPQPILFEHKCPQPTSFNRMHPQPALFNQVY 308

Query: 302 SQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRFENNVGYPLGESL-------ISYER 354
           SQT L      + FP G+ +     S    D    + N+   P G ++         Y+ 
Sbjct: 309 SQTSLAT--NMNGFP-GYLQSTSTISIEKADDFNGYHNHTLEPHGRTVNHVDCSYNDYKI 365

Query: 355 YMVEAPGRTLNSYIYLIDQL 374
           YM EAPGRTL   +Y+  +L
Sbjct: 366 YMPEAPGRTLEGDLYVSPEL 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494364|ref|XP_002263396.2| PREDICTED: uncharacterized protein At4g26485 [Vitis vinifera]

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 187/370 (50%), Positives = 231/370 (62%), Gaps = 37/370 (10%)

Query: 12  EKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKS 71
           E++EK + HYSS HQILLVGEGDFSFSLCLA +F SASNI ASSLD YD +I+ YK+AKS
Sbjct: 15  EEQEKRLMHYSSFHQILLVGEGDFSFSLCLAHSFASASNIVASSLDPYDVLIKMYKKAKS 74

Query: 72  NLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSL 131
           NL+ L+KLG  +L GVDAT M+LH DL+ RKFDRII+NFPHAGF+GKEDN L+I MHR L
Sbjct: 75  NLEALEKLGASLLFGVDATKMKLHTDLKMRKFDRIIYNFPHAGFHGKEDNRLMINMHRDL 134

Query: 132 VRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNN 191
           V  FFRN+SGMLR  GE+HV+HKTT PFS+WN++ELA  +SL L  C +FK EDYP YNN
Sbjct: 135 VHGFFRNASGMLRANGEIHVNHKTTAPFSHWNLEELASQNSLVLFECVDFKKEDYPGYNN 194

Query: 192 KRGDGPRCDEPFPLGECSTFIFGFLPAGNKKSGGMSCNEYTGKRSRPLQENPLYSRYPHT 251
           KRG G RCDEPF LG CSTF F F P   K S  + C                +S   H 
Sbjct: 195 KRGAGSRCDEPFRLGACSTFKFRFSPTAMKMSR-IVC----------------HSDLNHR 237

Query: 252 NSTTSFLNIQRKRPKIVGGYFNSVREDFGRAGNCVGCSIHEFPRFDISEHSQTRLIGLPL 311
            S    L   ++ P            D+   G  +  +++  PR           +GLPL
Sbjct: 238 GSQQINLMQMQQWPG---------SSDYRGPGRNILANMNGIPRH----------MGLPL 278

Query: 312 FSDFPGGHYRIYDDCSSNANDTLKRFENNVGYPLGESL-ISYERYMVEAPGRTLNSYIYL 370
                    RI+D   ++A +T  R   +VGY + E+L + +ERYM E PGRTL  YI L
Sbjct: 279 TISVSNECSRIFDGYFNHAVETFGRTGYDVGYTVHEALRLGFERYMAEGPGRTLTGYINL 338

Query: 371 IDQLIRFRRL 380
           + +L    RL
Sbjct: 339 LQELQHLSRL 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494357|ref|XP_003634764.1| PREDICTED: uncharacterized protein At4g26485-like [Vitis vinifera] gi|296090018|emb|CBI39837.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 183/370 (49%), Positives = 227/370 (61%), Gaps = 46/370 (12%)

Query: 12  EKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKS 71
           E++EK + HYSS HQILLVGEGDFSFSLCLA +F SASNI ASSLD YD +I+ YK+AKS
Sbjct: 15  EEQEKRLMHYSSFHQILLVGEGDFSFSLCLAHSFASASNIVASSLDPYDVLIKMYKKAKS 74

Query: 72  NLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSL 131
           NL+ L+KLG  +L GVDAT M+LH DL+  KFDRII+NFPHAGF+GKEDN L+I MHR L
Sbjct: 75  NLEALEKLGASLLFGVDATKMKLHTDLKMWKFDRIIYNFPHAGFHGKEDNRLMINMHRDL 134

Query: 132 VRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNN 191
           V  FFRN+SGMLR  GE+HV+HKTT PFS+WN++ELA  +SL L  C +FK EDYP YNN
Sbjct: 135 VHGFFRNASGMLRANGEIHVNHKTTAPFSHWNLEELASQNSLVLFECVDFKKEDYPGYNN 194

Query: 192 KRGDGPRCDEPFPLGECSTFIFGFLPAGNKKSGGMSCNEYTGKRSRPLQENPLYSRYPHT 251
           KRG G RCDEPF LG C TF F F P   K S  + C                +S   H 
Sbjct: 195 KRGAGSRCDEPFRLGACGTFKFRFSPIAMKMSR-IVC----------------HSDLNHR 237

Query: 252 NSTTSFLNIQRKRPKIVGGYFNSVREDFGRAGNCVGCSIHEFPRFDISEHSQTRLIGLPL 311
            S    L   ++ P            D+   G  +  +++  PR           +GLPL
Sbjct: 238 GSQQINLMQMQQWPG---------SSDYRGPGRNILANMNGIPRH----------MGLPL 278

Query: 312 FSDFPGGHYRIYDDCSSNANDTLKRFENNVGYPLGESL-ISYERYMVEAPGRTLNSYIYL 370
                     I+D   ++A +T  R   +VGY + E+  + +ERYM E PGRTL  YI L
Sbjct: 279 ---------TIFDGYFNHAVETFGRNGYDVGYTVHEAFRLGFERYMAEGPGRTLTGYINL 329

Query: 371 IDQLIRFRRL 380
           + +L    RL
Sbjct: 330 LQELQHLSRL 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569597|ref|XP_003552985.1| PREDICTED: uncharacterized protein LOC100802899 [Glycine max]

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 165/302 (54%), Positives = 204/302 (67%), Gaps = 22/302 (7%)

Query: 9   QCEEKEE--KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKY 66
           Q +E+E+  KW+ HYSS HQILLVGEGDFSFSL LA +FGSASN+ ASSL+SYDDVI+ Y
Sbjct: 14  QQQEREDNAKWVTHYSSYHQILLVGEGDFSFSLSLAKSFGSASNMVASSLNSYDDVIKMY 73

Query: 67  KRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIE 126
           K AKSNLD+L KLG C+LHGVDAT M+LH DL+ R+FD++IFNFPHAGF+GKEDN LLI+
Sbjct: 74  KNAKSNLDDLHKLGACLLHGVDATKMKLHSDLKMRRFDQVIFNFPHAGFHGKEDNTLLIK 133

Query: 127 MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDY 186
            H++LV  FF+N+SGMLR  GE+HVSHKTT PF+NWNI++LA    L LI C++FK EDY
Sbjct: 134 KHKALVLGFFKNASGMLRANGEIHVSHKTTAPFNNWNIEKLAAQCFLKLIECADFKREDY 193

Query: 187 PAYNNKRGDGPRCDEPFPLGECSTFIFGFLPAGNKKSGGMSCNEYTGKRSR---PLQE-- 241
           P YNNKRGD  RCDEPFPLG+C TF F + P   K+   +  N+    R +   PLQE  
Sbjct: 194 PGYNNKRGDSYRCDEPFPLGKCCTFKFIYNPKA-KRQNHVKRNQMVVSRQQTCLPLQEIE 252

Query: 242 --------------NPLYSRYPHTNSTTSFLNIQRKRPKIVGGYFNSVREDFGRAGNCVG 287
                          P  S +P     TS   +  +   I G   +++ E  GR     G
Sbjct: 253 VAVEQLPTSAHLNYYPQTSHFPKIEEVTSIFGLTNRCTSITGCPLSTMAEVHGRVTPSGG 312

Query: 288 CS 289
            S
Sbjct: 313 YS 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090026|emb|CBI39845.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 187/397 (47%), Positives = 231/397 (58%), Gaps = 64/397 (16%)

Query: 12  EKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKS 71
           E++EK + HYSS HQILLVGEGDFSFSLCLA +F SASNI ASSLD YD +I+ YK+AKS
Sbjct: 140 EEQEKRLMHYSSFHQILLVGEGDFSFSLCLAHSFASASNIVASSLDPYDVLIKMYKKAKS 199

Query: 72  NLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIE----- 126
           NL+ L+KLG  +L GVDAT M+LH DL+ RKFDRII+NFPHAGF+GKEDN L+I      
Sbjct: 200 NLEALEKLGASLLFGVDATKMKLHTDLKMRKFDRIIYNFPHAGFHGKEDNRLMINLNFTA 259

Query: 127 ----------------------MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNI 164
                                 MHR LV  FFRN+SGMLR  GE+HV+HKTT PFS+WN+
Sbjct: 260 KSSIHCSCSSWSMLLFSYVLFVMHRDLVHGFFRNASGMLRANGEIHVNHKTTAPFSHWNL 319

Query: 165 KELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPRCDEPFPLGECSTFIFGFLPAGNKKSG 224
           +ELA  +SL L  C +FK EDYP YNNKRG G RCDEPF LG CSTF F F P   K S 
Sbjct: 320 EELASQNSLVLFECVDFKKEDYPGYNNKRGAGSRCDEPFRLGACSTFKFRFSPTAMKMSR 379

Query: 225 GMSCNEYTGKRSRPLQENPLYSRYPHTNSTTSFLNIQRKRPKIVGGYFNSVREDFGRAGN 284
            + C                +S   H  S    L   ++ P            D+   G 
Sbjct: 380 -IVC----------------HSDLNHRGSQQINLMQMQQWPG---------SSDYRGPGR 413

Query: 285 CVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRFENNVGYP 344
            +  +++  PR           +GLPL         RI+D   ++A +T  R   +VGY 
Sbjct: 414 NILANMNGIPRH----------MGLPLTISVSNECSRIFDGYFNHAVETFGRTGYDVGYT 463

Query: 345 LGESL-ISYERYMVEAPGRTLNSYIYLIDQLIRFRRL 380
           + E+L + +ERYM E PGRTL  YI L+ +L    RL
Sbjct: 464 VHEALRLGFERYMAEGPGRTLTGYINLLQELQHLSRL 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122324|ref|XP_002330595.1| predicted protein [Populus trichocarpa] gi|222872153|gb|EEF09284.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 146/231 (63%), Positives = 180/231 (77%)

Query: 14  EEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNL 73
           +EKW+KHYSS HQILLVGEGDFSFS CLA +FGS S I ASSLDSYD VIQKYK+AKSNL
Sbjct: 2   KEKWVKHYSSKHQILLVGEGDFSFSWCLARSFGSGSKIVASSLDSYDAVIQKYKKAKSNL 61

Query: 74  DNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVR 133
           ++LK+LG   L+GVDAT M+ H  LR +KFDRIIFNFPHAGFY KEDN+L+IEMH+ LV 
Sbjct: 62  ESLKELGASTLYGVDATKMKHHLPLRMQKFDRIIFNFPHAGFYLKEDNNLMIEMHKELVG 121

Query: 134 DFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKR 193
           +FF N++ ML+  GE+HV+HKT+ PF +WNI ELA  +SL  I   +FK+EDYP Y+NKR
Sbjct: 122 NFFGNANDMLQAYGEIHVTHKTSSPFCHWNILELARRNSLEFIGRDDFKMEDYPGYSNKR 181

Query: 194 GDGPRCDEPFPLGECSTFIFGFLPAGNKKSGGMSCNEYTGKRSRPLQENPL 244
           G+G RCD+PFPLGECSTF F       +  G ++ ++   KRSR +Q NP+
Sbjct: 182 GEGDRCDQPFPLGECSTFKFRSSHTDKQIYGVINNSDSALKRSRQIQGNPM 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460297|ref|XP_003600430.1| hypothetical protein MTR_3g061070 [Medicago truncatula] gi|355489478|gb|AES70681.1| hypothetical protein MTR_3g061070 [Medicago truncatula]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/200 (66%), Positives = 163/200 (81%)

Query: 14  EEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNL 73
           E KW+ HY S+HQILLVG+GDFSFSL LA AFGSASNI ASSLD+YD+VI+KYK AKSN+
Sbjct: 33  EPKWVTHYCSDHQILLVGDGDFSFSLSLAKAFGSASNIVASSLDTYDEVIKKYKNAKSNV 92

Query: 74  DNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVR 133
           + L+KLG  +LHGVDAT M+ HPDL+ R+FDR+IFNFPHAGF+ KEDN ++I+MH  LV 
Sbjct: 93  EELQKLGAYVLHGVDATAMKFHPDLKMRRFDRVIFNFPHAGFHRKEDNLMMIKMHMDLVF 152

Query: 134 DFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKR 193
            FF+N+  MLR  GE+HV+HKTT PF +WNI++LA    L++I C +F  EDYP YNNKR
Sbjct: 153 GFFKNACHMLRANGEIHVNHKTTPPFIDWNIEKLAKQCFLTMIDCIDFNKEDYPGYNNKR 212

Query: 194 GDGPRCDEPFPLGECSTFIF 213
           GD  RCD+PFPLG+CSTF F
Sbjct: 213 GDSYRCDDPFPLGKCSTFKF 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853298|ref|XP_002894530.1| hypothetical protein ARALYDRAFT_892585 [Arabidopsis lyrata subsp. lyrata] gi|297340372|gb|EFH70789.1| hypothetical protein ARALYDRAFT_892585 [Arabidopsis lyrata subsp. lyrata]

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 136/212 (64%), Positives = 161/212 (75%)

Query: 4   VAMASQCEEKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVI 63
            + A   +E+EE W+KHYSSNHQILLVGEGDFSFS  LA  FGSASNICASSLDSYD V+
Sbjct: 27  TSRARDNDEEEEVWVKHYSSNHQILLVGEGDFSFSHSLATLFGSASNICASSLDSYDVVV 86

Query: 64  QKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHL 123
           +KYK+A+SN++ LK+LG  +LHGVDATT+  HPDLR R+FDR+IFNFPHAGF+G+E +  
Sbjct: 87  RKYKKARSNIETLKRLGALLLHGVDATTLHFHPDLRYRRFDRVIFNFPHAGFHGRESDSS 146

Query: 124 LIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKI 183
           LI  HR LV  FF  +S +LR  GEVHVSHK   PF NWN++ELA    L LI    F+ 
Sbjct: 147 LIRKHRELVFGFFNGASRLLRADGEVHVSHKNKAPFCNWNLEELASRCFLVLIQRVAFEK 206

Query: 184 EDYPAYNNKRGDGPRCDEPFPLGECSTFIFGF 215
            +YP Y NKRGDG RCD+PF LGECSTF F F
Sbjct: 207 SNYPGYENKRGDGSRCDKPFLLGECSTFKFRF 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183353|ref|NP_564700.2| uncharacterized protein [Arabidopsis thaliana] gi|332195175|gb|AEE33296.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 135/202 (66%), Positives = 155/202 (76%)

Query: 14  EEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNL 73
           EE W+KHYSSNHQILLVGEGDFSFS  LA  FGSASNICASSLDSYD V++KYK+A+SNL
Sbjct: 17  EEVWVKHYSSNHQILLVGEGDFSFSHSLATLFGSASNICASSLDSYDVVVRKYKKARSNL 76

Query: 74  DNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVR 133
             LK+LG  +LHGVDATT+  HPDLR R+FDR+IFNFPHAGF+G+E +  LI  HR LV 
Sbjct: 77  KTLKRLGALLLHGVDATTLHFHPDLRYRRFDRVIFNFPHAGFHGRESDSSLIRKHRELVF 136

Query: 134 DFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKR 193
            FF  +S +LR  GEVHVSHK   PFS WN++ELA    L LI    F+  +YP Y NKR
Sbjct: 137 GFFNGASRLLRANGEVHVSHKNKAPFSEWNLEELASRCFLVLIQRVAFEKNNYPGYENKR 196

Query: 194 GDGPRCDEPFPLGECSTFIFGF 215
           GDG RCD+PF LGECSTF F F
Sbjct: 197 GDGRRCDQPFLLGECSTFKFRF 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090024|emb|CBI39843.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (716), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 142/237 (59%), Positives = 166/237 (70%), Gaps = 25/237 (10%)

Query: 12  EKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKS 71
           E++EK + HYSS HQILLVGEGDFSFSLCL  +F SASNI ASSLD Y  +I+ YK+AKS
Sbjct: 140 EEQEKRLMHYSSFHQILLVGEGDFSFSLCLGHSFASASNIVASSLDPYVVLIKMYKKAKS 199

Query: 72  NLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIE----- 126
           NL+ L+KLG  +L GVDAT M+LH  L+ RKFDRII+NFPHA F+GKEDN L+I+     
Sbjct: 200 NLEALEKLGASLLFGVDATKMKLHIGLKMRKFDRIIYNFPHASFHGKEDNRLMIKKRIVV 259

Query: 127 --------------------MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKE 166
                               MHR LV  FFRN+SGMLR  GE+HV+HKTT PFS+WN++E
Sbjct: 260 MDMICSLNFIVQSSIHCSCSMHRDLVHGFFRNASGMLRANGEIHVNHKTTAPFSHWNLEE 319

Query: 167 LAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPRCDEPFPLGECSTFIFGFLPAGNKKS 223
           LA  +SL L  C +FK EDYP YNNKRG G RCDEPF LG CSTF F F P   K S
Sbjct: 320 LASQNSLVLFECVDFKKEDYPGYNNKRGAGSRCDEPFRLGACSTFKFRFSPTAMKMS 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
TAIR|locus:2012115	314	AT1G55800 "AT1G55800" [Arabido	0.316	0.391	0.468	9.6e-44
TAIR|locus:2161745	220	AT5G56060 [Arabidopsis thalian	0.478	0.845	0.463	5.3e-40
TAIR|locus:504954949	256	AT5G56075 [Arabidopsis thalian	0.485	0.738	0.435	1.3e-38
TAIR|locus:2179265	193	AT5G25030 [Arabidopsis thalian	0.483	0.974	0.393	1.3e-31
POMBASE|SPCC1919.13c	282	SPCC1919.13c "ribosome biogene	0.465	0.641	0.327	2.2e-25
UNIPROTKB|G4MUS2	346	MGG_11170 "Uncharacterized pro	0.226	0.254	0.351	3.4e-13
ZFIN|ZDB-GENE-030131-8403	582	si:dkey-71l1.3 "si:dkey-71l1.3	0.467	0.312	0.299	8.7e-13
UNIPROTKB|J9PAV7	809	ALG9 "Uncharacterized protein"	0.308	0.148	0.377	4.1e-11
CGD|CAL0004722	353	orf19.7366 [Candida albicans (	0.210	0.232	0.373	7.9e-11
UNIPROTKB|Q5A4G8	353	CaO19.7366 "Putative uncharact	0.210	0.232	0.373	7.9e-11

TAIR|locus:2012115 AT1G55800 "AT1G55800" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 60/128 (46%), Positives = 77/128 (60%)

Query:    60 DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKE 119
             DDV++KYK A+SNL+ LK+LG  +LHGVDATT+  HPDLR R+FDR+IFNFPH GF+ KE
Sbjct:    88 DDVVRKYKNARSNLETLKRLGAFLLHGVDATTLHFHPDLRYRRFDRVIFNFPHTGFHRKE 147

Query:   120 DNHLLIEMH----RSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-FSNWNIKELAIGSSLS 174
              +   I+      R+L +DF   +S MLR  GE+    K   P + N             
Sbjct:   148 SDPCQIQPAAATLRNLFKDFLHGASHMLRADGELEAFEKRNYPGYENKRGDGSRCDQPFL 207

Query:   175 LIWCSEFK 182
             L  CS FK
Sbjct:   208 LGECSTFK 215

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161745 AT5G56060 [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 88/190 (46%), Positives = 124/190 (65%)

Query:    18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK 77
             ++ YS+  +ILLVGEGDFSFSL LA  FGSA+NI A+SLD+ +++  KY   K+N++ L+
Sbjct:     9 LQQYSNKQKILLVGEGDFSFSLSLARVFGSATNITATSLDTREELGIKYTDGKANVEGLE 68

Query:    78 KLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGF-YGKEDNHLLIEMHRSLVRDFF 136
               G  ++HGV+  +M    D R  ++DRIIFNFPH+G  +G E +   I +H+ LVR F 
Sbjct:    69 LFGCTVVHGVNVHSMS--SDYRLGRYDRIIFNFPHSGLGFGSEHDIFFIMLHQGLVRGFL 126

Query:   137 RNSSGMLRD-GGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGD 195
              ++  ML+D  GE+HV+HKTT PF+ W I+ LA    L LI   EF    +P Y+NK+G 
Sbjct:   127 ESARKMLKDEDGEIHVTHKTTDPFNRWGIETLAGEKGLRLIGEIEFHKWAFPGYSNKKGG 186

Query:   196 GPRCDEPFPL 205
             G  C+  F L
Sbjct:   187 GSNCNSTFLL 196

GO:0000049 "tRNA binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

TAIR|locus:504954949 AT5G56075 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 91/209 (43%), Positives = 129/209 (61%)

Query:     9 QCEEKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKR 68
             Q   +E K ++HY++  +ILLVGEGDFSFSL LA AFGSASN+ A+SLD+  ++ QK+K 
Sbjct:    58 QTNVQETKRLRHYTNKQKILLVGEGDFSFSLSLARAFGSASNLTATSLDTQGELEQKFKN 117

Query:    69 AKSNLDNLKKLGTCILHGVDATTMELHPDLR-TRKFDRIIFNFPHAGFYGKEDNHLLIEM 127
              K+N++ L++LG  +++GV+  +M   P +  +  +DR+IFNFP          H     
Sbjct:   118 GKANVEELERLGCSVVYGVNVHSMITKPSVGGSAIYDRVIFNFP---------TH----- 163

Query:   128 HRSLVRDFFRNSSGMLRD---GGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIE 184
                LVR F +++  +++D   GGE+HV HKT  PFS W +K L     L LI   EF + 
Sbjct:   164 --ELVRGFMKSARVLVKDEDKGGEIHVIHKTEYPFSEWKLKTLGEKEGLDLIREVEFCLS 221

Query:   185 DYPAYNNKRGDGPRCDEPFPLGECSTFIF 213
              YP Y NKRG G   D  FP+G+ STF+F
Sbjct:   222 HYPGYFNKRGSGGYSDSSFPVGKSSTFMF 250

GO:0000049 "tRNA binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

TAIR|locus:2179265 AT5G25030 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 79/201 (39%), Positives = 118/201 (58%)

Query:    13 KEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSN 72
             +E K +  YS+  +IL+VGEG+FSFSL LA A GSA+NI A SLD  +D+ + Y   K N
Sbjct:     4 QESKRLSRYSNEQKILVVGEGEFSFSLSLAKALGSATNITAISLDIREDLGRNYNNGKGN 63

Query:    73 LDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLV 132
             ++ L++LG  ++ GV+  +M+   D R   +D IIFNFPHAG   K     + E  R ++
Sbjct:    64 VEELERLGCTVVRGVNVHSMK--SDDRLAHYDIIIFNFPHAGKRNKVFGGFM-ESAREMM 120

Query:   133 RDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNK 192
             +D          + GE+H++  T  PF+ W++K LA  S L LI   +F    +P+ +NK
Sbjct:   121 KD----------EDGEIHITLNTLNPFNKWDLKALAEESGLRLIQRMQFIKWAFPSSSNK 170

Query:   193 RGDGPRCDEPFPLGECSTFIF 213
             R  G  CD  +P+G   T++F
Sbjct:   171 RESGSNCDFIYPIGSAITYMF 191

GO:0000049 "tRNA binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

POMBASE|SPCC1919.13c SPCC1919.13c "ribosome biogenesis protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 60/183 (32%), Positives = 108/183 (59%)

Query:    15 EKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASN-ICASSLDSYDDVIQKYKRAKSNL 73
             E+++  +  N++ LL+GEG+FSF+  L L   S+   + A+S DS +D+ QKY  A   +
Sbjct:    48 ERYVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSSEGFVLATSYDSKEDLKQKYPDAAEYI 107

Query:    74 DNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVR 133
               ++  G  ++H +DAT + LH  L+T+KFD I +NFPH+G   K+ +  +++  + L+ 
Sbjct:   108 SKIEINGGKVMHEIDATKLHLHKKLKTQKFDTIFWNFPHSGKGIKDQDRNILDNQKMLLA 167

Query:   134 DFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKR 193
              FF+ S  +L + G + ++   T P++ WN+K LA  +  + +   +F    YP Y+++R
Sbjct:   168 -FFKASKFLLSEKGVIVITLAETKPYTLWNLKGLAKDAGYTSLMTEKFDSSFYPEYSHRR 226

Query:   194 GDG 196
               G
Sbjct:   227 TIG 229

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0042254 "ribosome biogenesis" evidence=NAS

UNIPROTKB|G4MUS2 MGG_11170 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 147 (56.8 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
 Identities = 32/91 (35%), Positives = 53/91 (58%)

Query:   104 DRIIFNFPHAGFYGKE-DNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW 162
             DRI+FNFPH G  GK  D +  +  ++ L+ DFF+ ++  L  GG + V+     P++ W
Sbjct:   196 DRILFNFPHVG--GKSTDVNRQVRYNQELLVDFFKRANCCLSPGGSIVVTLFEGEPYTLW 253

Query:   163 NIKELAIGSSLSLIWCSEFKIEDYPAYNNKR 193
             N+++LA  S L +     F+ + YP Y++ R
Sbjct:   254 NVRDLARHSGLQVERSFAFRADAYPGYHHAR 284

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-8403 si:dkey-71l1.3 "si:dkey-71l1.3" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 8.7e-13, P = 8.7e-13
 Identities = 61/204 (29%), Positives = 101/204 (49%)

Query:    22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT 81
             S   ++LLVGEG+FSFS  L+   G    + A+   S ++  ++ +    N+  L++ G+
Sbjct:     2 SKTREVLLVGEGNFSFSAALSETGGDDVGVTATCFQSENETYRQ-EGVALNVQRLRERGS 60

Query:    82 CILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSG 141
              +L  VD T ++ H  L+   FD +IFNFPH G   ++     ++ +R L+  FF ++  
Sbjct:    61 VVLFEVDCTCLKEHEALQDHLFDCVIFNFPHCG---RKSG---VKKNRVLLMKFFLSAVA 114

Query:   142 MLRDGGEVHVS---HKTTVP--------FSNWNIKELAIGSSLSLIWCSEFKIEDYPAYN 190
             +L+D GEVHV+    +   P         ++W +  +A  + L L     F+ E Y  Y 
Sbjct:   115 VLKDNGEVHVTLCNGQGGTPCDSPMREWHNSWQVVAMAAEAGLILREIRPFECEMYQGY- 173

Query:   191 NKRGDGPRC-DEPFPLGECSTFIF 213
               R  G R  D+ F +    T IF
Sbjct:   174 --RCTGYRSQDKGFHVEGALTHIF 195

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

UNIPROTKB|J9PAV7 ALG9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 188 (71.2 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
 Identities = 48/127 (37%), Positives = 72/127 (56%)

Query:    26 QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILH 85
             ++LLVGEG+FSF+  L+     ++ + A+ L    DV +    A+ NL  L++ GT IL 
Sbjct:     5 RLLLVGEGNFSFAAALSETLDGSTRVTATCLQRAADVARD-PVARENLRRLRERGTEILF 63

Query:    86 GVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRD 145
              VD T +    +L  R+FDRI FNFPH G   K      +  +R L+  FF++   +L +
Sbjct:    64 CVDCTRLADALELHPREFDRIYFNFPHCG--RKAG----VAKNRELLAKFFQSCKDVLAE 117

Query:   146 GGEVHVS 152
              GEVHV+
Sbjct:   118 EGEVHVA 124

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0006506 "GPI anchor biosynthetic process" evidence=IEA

CGD|CAL0004722 orf19.7366 [Candida albicans (taxid:5476)]

 Score = 151 (58.2 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query:    24 NHQILLVGEGDFSFSLCLALA-FGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC 82
             N ++LL+GEGDFSF+  L L  F    N+ A+S DS++ +I KY+     ++ LK +G  
Sbjct:    82 NDKVLLIGEGDFSFAKSLILQNFIQPENLIATSFDSFEQLINKYENVNEIIEELKNMGVI 141

Query:    83 ILHGVDATTMELHPDLRTRKFDR 105
             I+H +D T +     L   K  R
Sbjct:   142 IMHEIDGTNLLKSLKLNPNKLKR 164

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A4G8 CaO19.7366 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 151 (58.2 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query:    24 NHQILLVGEGDFSFSLCLALA-FGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC 82
             N ++LL+GEGDFSF+  L L  F    N+ A+S DS++ +I KY+     ++ LK +G  
Sbjct:    82 NDKVLLIGEGDFSFAKSLILQNFIQPENLIATSFDSFEQLINKYENVNEIIEELKNMGVI 141

Query:    83 ILHGVDATTMELHPDLRTRKFDR 105
             I+H +D T +     L   K  R
Sbjct:   142 IMHEIDGTNLLKSLKLNPNKLKR 164

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	389
pfam10354	166	pfam10354, DUF2431, Domain of unknown function (DU	9e-68
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	4e-04

>gnl|CDD|220711 pfam10354, DUF2431, Domain of unknown function (DUF2431)

 Score =  211 bits (539), Expect = 9e-68
 Identities = 81/167 (48%), Positives = 114/167 (68%), Gaps = 1/167 (0%)

Query: 28  LLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGV 87
           LLVGEGDFSFSL LA  FGS +N+ A+SLDS +++ +KY  A+ NL  L++ G  +LHGV
Sbjct: 1   LLVGEGDFSFSLALATHFGSPTNLVATSLDSREELEEKYGDAEENLQELEENGVTVLHGV 60

Query: 88  DATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGG 147
           DAT ++ H  L+   FDRIIFNFPH G   K+ +   I ++R L+R FF+N+S +L+ GG
Sbjct: 61  DATKLKKHFRLKKNSFDRIIFNFPHVGGKIKDSDR-NIRLNRELLRGFFKNASELLKPGG 119

Query: 148 EVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRG 194
           E+HV+ K   P+++WNI+ LA  + L L    +F I DYP Y ++R 
Sbjct: 120 EIHVTLKDGEPYNSWNIEALAAEAGLILEESVKFDISDYPGYKHRRT 166

This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known. Length = 166

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 68  RAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEM 127
            A+  L          +   DA       +L    FD ++ N P    YG        + 
Sbjct: 39  LARRRLALAGLAPRVRVVVGDARE---LLELPDGSFDLVLGNPP----YG--PRAGDPKD 89

Query: 128 HRSLVRDFFRNSSGMLRDGG 147
           +R L   F   +  +L+ GG
Sbjct: 90  NRDLYDRFLAAALRLLKPGG 109

This family contains methyltransferase domains. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	100.0
KOG4174	282	consensus Uncharacterized conserved protein [Funct	100.0
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.86
KOG4174	282	consensus Uncharacterized conserved protein [Funct	97.66
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.41
PRK14968	188	putative methyltransferase; Provisional	97.37
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	97.19
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.18
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.17
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.14
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.06
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.0
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.95
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	96.93
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.9
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	96.86
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	96.83
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.78
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.74
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.73
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.72
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.72
PRK14967	223	putative methyltransferase; Provisional	96.71
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.7
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	96.7
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	96.61
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	96.58
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	96.56
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.54
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.53
PRK01581	374	speE spermidine synthase; Validated	96.44
PRK03612	521	spermidine synthase; Provisional	96.42
TIGR00438	188	rrmJ cell division protein FtsJ.	96.29
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.26
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.24
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.22
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.1
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	96.09
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	95.98
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	95.91
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	95.85
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	95.83
PRK04457	262	spermidine synthase; Provisional	95.77
PRK08317	241	hypothetical protein; Provisional	95.77
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.7
PLN02233	261	ubiquinone biosynthesis methyltransferase	95.64
PLN02244	340	tocopherol O-methyltransferase	95.59
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	95.58
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	95.57
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	95.53
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.52
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	95.49
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	95.45
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	95.44
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.41
PRK04266	226	fibrillarin; Provisional	95.31
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	95.2
PRK00811	283	spermidine synthase; Provisional	95.19
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	95.14
PRK11207	197	tellurite resistance protein TehB; Provisional	95.04
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	94.84
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	94.78
PLN02490	340	MPBQ/MSBQ methyltransferase	94.78
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	94.37
COG1041	347	Predicted DNA modification methylase [DNA replicat	94.31
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	94.31
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	94.27
COG4123	248	Predicted O-methyltransferase [General function pr	94.08
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	94.07
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	93.87
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	93.79
PLN02366	308	spermidine synthase	93.7
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	93.66
PTZ00146	293	fibrillarin; Provisional	93.26
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	93.26
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	93.03
PRK06922	677	hypothetical protein; Provisional	92.9
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	92.73
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	92.69
TIGR00740	239	methyltransferase, putative. A simple BLAST search	92.65
PHA03411	279	putative methyltransferase; Provisional	92.56
TIGR00452	314	methyltransferase, putative. Known examples to dat	92.5
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	92.18
PLN02336	475	phosphoethanolamine N-methyltransferase	92.05
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	92.0
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	91.84
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	91.74
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	91.66
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	91.62
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	91.28
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	91.21
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	91.19
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	91.12
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	91.1
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	90.76
COG2890	280	HemK Methylase of polypeptide chain release factor	90.74
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	90.72
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	90.53
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	90.44
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	90.09
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	89.86
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	89.78
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	89.37
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	89.28
PRK00536	262	speE spermidine synthase; Provisional	89.1
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	89.09
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	89.08
KOG2904	328	consensus Predicted methyltransferase [General fun	88.84
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	88.54
PRK12335	287	tellurite resistance protein TehB; Provisional	88.51
PLN02823	336	spermine synthase	87.4
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	86.81
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	86.1
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	85.36
PRK06940	275	short chain dehydrogenase; Provisional	84.81
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	84.77
PLN02336	475	phosphoethanolamine N-methyltransferase	84.54
PRK06202	232	hypothetical protein; Provisional	83.53
PRK10258	251	biotin biosynthesis protein BioC; Provisional	82.1
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	81.89
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	81.61
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	81.17
PLN02232	160	ubiquinone biosynthesis methyltransferase	80.94
COG2520	341	Predicted methyltransferase [General function pred	80.69
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	80.63
PRK07402	196	precorrin-6B methylase; Provisional	80.61
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	80.41
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	80.23

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=100.00  E-value=7.2e-64  Score=450.74  Aligned_cols=166  Identities=51%  Similarity=0.884  Sum_probs=163.0

Q ss_pred             EEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceEE
Q 016441           28 LLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRII  107 (389)
Q Consensus        28 LLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrII  107 (389)
                      |||||||||||+|||++++++.+||||||||++++.+|||++.+|+++|++.|++|+||||||+|++++.++.++|||||
T Consensus         1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi   80 (166)
T PF10354_consen    1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII   80 (166)
T ss_pred             CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence            79999999999999999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeCCCCCCC
Q 016441          108 FNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYP  187 (389)
Q Consensus       108 FNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F~~~~YP  187 (389)
                      |||||+| .+.++++++|++||+||.+||+||+++|+++|+||||||+|+||++|||+++|+++||+|.++++|++++||
T Consensus        81 FNFPH~G-~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~~yp  159 (166)
T PF10354_consen   81 FNFPHVG-GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFDPSDYP  159 (166)
T ss_pred             EeCCCCC-CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCCHHHCC
Confidence            9999999 588999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccC
Q 016441          188 AYNNKRG  194 (389)
Q Consensus       188 GY~hKRt  194 (389)
                      ||+||||
T Consensus       160 gY~~~rT  166 (166)
T PF10354_consen  160 GYEHKRT  166 (166)
T ss_pred             CcccCCC
Confidence            9999997

>KOG4174 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.9e-56  Score=426.66  Aligned_cols=213  Identities=48%  Similarity=0.782  Sum_probs=196.1

Q ss_pred             hhhhhhhhhccccccCCCCCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHH-HHHHhhhhHHHHHHHHHhCCCE
Q 016441            5 AMASQCEEKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYD-DVIQKYKRAKSNLDNLKKLGTC   82 (389)
Q Consensus         5 ~~~~~~~~~~~K~~~~Yss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSee-eL~~KY~~A~~Ni~~Lr~~Gv~   82 (389)
                      ...+..+..+++|+.+|++.++||+|||||||||+||+.++| ++.||+|||||+++ ++.+||+++++|+++|+.+|+.
T Consensus        38 ~~~~~~~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~  117 (282)
T KOG4174|consen   38 LQNLRMDGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT  117 (282)
T ss_pred             HhhhhhccCceeeeeeccccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc
Confidence            345566788899999999999999999999999999999999 88999999999999 9999999999999999999999


Q ss_pred             EEeccccCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHH-HhHHHHHHHHHhhHhccc-CCCeEEEEecCCCCCC
Q 016441           83 ILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIE-MHRSLVRDFFRNSSGMLR-DGGEVHVSHKTTVPFS  160 (389)
Q Consensus        83 VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir-~nr~LL~~FF~SA~~lL~-~~GeIHVTLk~g~PY~  160 (389)
                      |+|+||||+|+.+++++.++||+|||||||.|..-+-++++++. .||+|+++||++|++||+ +.|+|||||++++||+
T Consensus       118 I~h~Vdv~sl~~~~~~~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~  197 (282)
T KOG4174|consen  118 ILHGVDVTSLKFHADLRLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFN  197 (282)
T ss_pred             eEecccceeEEecccccccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCc
Confidence            99999999999999999999999999999999533336666666 699999999999999999 8899999999999999


Q ss_pred             cccHHHHHhhCCcEEEEEeeCCCCCCCCCccccCCCCCCCCCccCCC--cceEEEEecC
Q 016441          161 NWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPRCDEPFPLGE--CSTFIFGFLP  217 (389)
Q Consensus       161 sWnIe~LAa~aGL~L~~~~~F~~~~YPGY~hKRt~G~rsdk~F~~g~--a~TfvF~k~~  217 (389)
                      .|||+.||++.||.|.+...|+++.||||+||||+|.+|+.|+.++.  ++.|.|.+..
T Consensus       198 ~W~ik~Lak~~gl~L~~~skF~~~~~Pgy~~Kr~~gs~cd~p~l~~~~d~~~y~f~~~~  256 (282)
T KOG4174|consen  198 PWNIKFLAKEFGLTLLEDSKFEKSNYPGYSNKRGDGSRCDSPLLVHERDAIEYHFLKFV  256 (282)
T ss_pred             hhhhhHhhhhccccchhcccchhhcCCCcccccCCCcccCCccccccccceEEEEEeec
Confidence            99999999999999999999999999999999999999998877764  5677776654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.86  E-value=3.4e-05  Score=70.36  Aligned_cols=148  Identities=16%  Similarity=0.204  Sum_probs=97.7

Q ss_pred             cccccCCC-CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCC
Q 016441           15 EKWIKHYS-SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTME   93 (389)
Q Consensus        15 ~K~~~~Ys-s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~   93 (389)
                      .+|-+-|. ...+||=+|-|+=.|+.+||+.+. ..++++.-.  ..++.++   +.+++....-.++.++ ..|+.++.
T Consensus         7 ~~~~~~f~~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~--~~~~l~~---a~~~~~~~~l~ni~~i-~~d~~~~~   79 (194)
T TIGR00091         7 PDFATVFGNKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEI--HTPIVLA---ANNKANKLGLKNLHVL-CGDANELL   79 (194)
T ss_pred             CCHHHHhCCCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEe--eHHHHHH---HHHHHHHhCCCCEEEE-ccCHHHHH
Confidence            34544554 456799999999999999998863 456665544  3444432   5555554322245544 44887653


Q ss_pred             CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCc
Q 016441           94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSL  173 (389)
Q Consensus        94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL  173 (389)
                      .. .+....+|.|+.|||..-.+.+.      .++|.+...|++.+..+|+++|.++++.... .|..|-++.+.+..++
T Consensus        80 ~~-~~~~~~~d~v~~~~pdpw~k~~h------~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~-~~~~~~~~~~~~~~~f  151 (194)
T TIGR00091        80 DK-FFPDGSLSKVFLNFPDPWPKKRH------NKRRITQPHFLKEYANVLKKGGVIHFKTDNE-PLFEDMLKVLSENDLF  151 (194)
T ss_pred             Hh-hCCCCceeEEEEECCCcCCCCCc------cccccCCHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHHHHHHHhCCCe
Confidence            21 12335799999999865432111      1344556789999999999999999877444 4788888888887777


Q ss_pred             EEEE
Q 016441          174 SLIW  177 (389)
Q Consensus       174 ~L~~  177 (389)
                      ....
T Consensus       152 ~~~~  155 (194)
T TIGR00091       152 ENTS  155 (194)
T ss_pred             Eecc
Confidence            7654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>KOG4174 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=4.8e-06  Score=81.45  Aligned_cols=128  Identities=19%  Similarity=0.109  Sum_probs=105.2

Q ss_pred             hhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceEEEcCCCCC
Q 016441           35 FSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAG  114 (389)
Q Consensus        35 FSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G  114 (389)
                      |+|+++|-.......+++|||+.+..++.+. |.+.+|++-++..|..+.+.|+.++.+.-..+..+-|+-+.+=+||.|
T Consensus         1 ~g~~ar~ke~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g   79 (282)
T KOG4174|consen    1 FGFAARLKETLDLSTQLTATCLQRPAELARD-PLAWENLQNLRMDGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFG   79 (282)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhcchhhhccC-hhhHHHHhhhhhccCceeeeeeccccccEEEecccchhhHHHHHHHhC
Confidence            6788888766655679999999988887664 778999999999999999999999999887777789999999999999


Q ss_pred             CCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeCCCC
Q 016441          115 FYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIE  184 (389)
Q Consensus       115 ~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F~~~  184 (389)
                      .  +++    .-.+..|...+|               -|+..+|-..|||+.|++-.+.++.+.-++.-.
T Consensus        80 ~--sa~----ni~atSlDsk~~---------------dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~  128 (282)
T KOG4174|consen   80 R--SAG----NITATSLDSKEF---------------DLKQKYPDAKENVEALKRLGGTILHGVDVTSLK  128 (282)
T ss_pred             c--ccc----ceeeeeccchhh---------------hhhhcccchHHHHHHHHHcCCceEecccceeEE
Confidence            4  122    225666777776               567788889999999999999999887555433

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.41  E-value=0.00061  Score=60.94  Aligned_cols=114  Identities=24%  Similarity=0.305  Sum_probs=74.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ...+||=+|=|.==.|.+|++.. ....|+|+-.+  ....+   -++.|++...-.++.|+. -|.-+     .+...+
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~--~~a~~---~a~~n~~~n~~~~v~~~~-~d~~~-----~~~~~~   98 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDIN--PDALE---LAKRNAERNGLENVEVVQ-SDLFE-----ALPDGK   98 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESB--HHHHH---HHHHHHHHTTCTTEEEEE-SSTTT-----TCCTTC
T ss_pred             cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCC--HHHHH---HHHHHHHhcCcccccccc-ccccc-----cccccc
Confidence            67789999999998888888764 23356666444  33332   356777665544444442 23322     233689


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                      ||.||+|-|...+  .+       ....++..|++.|..+|+++|++.+-.....
T Consensus        99 fD~Iv~NPP~~~~--~~-------~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~  144 (170)
T PF05175_consen   99 FDLIVSNPPFHAG--GD-------DGLDLLRDFIEQARRYLKPGGRLFLVINSHL  144 (170)
T ss_dssp             EEEEEE---SBTT--SH-------CHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             eeEEEEccchhcc--cc-------cchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence            9999999995543  11       2456789999999999999999987665543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK14968 putative methyltransferase; Provisional

Probab=97.37  E-value=0.012  Score=51.77  Aligned_cols=139  Identities=18%  Similarity=0.231  Sum_probs=86.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH--hCCCEEEeccccCCCCCCCCcC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK--KLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr--~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      .+..+||-+|=|+=.++..|++.   +.+++|+-.+.  ++.+   .++.|+....  ..++.++. .|+.+     .+.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~--~~~~---~a~~~~~~~~~~~~~~~~~~-~d~~~-----~~~   87 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINP--YAVE---CAKCNAKLNNIRNNGVEVIR-SDLFE-----PFR   87 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCH--HHHH---HHHHHHHHcCCCCcceEEEe-ccccc-----ccc
Confidence            56778999999999999999886   46787766552  2322   2455554322  22244443 34432     123


Q ss_pred             CCCcceEEEcCCCCCCCCCccch-----HHH----HHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhh
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNH-----LLI----EMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIG  170 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~-----r~I----r~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~  170 (389)
                      ...||.|++|.|.... + .+..     ...    ......+..|++.+..+|+++|.+.+...+....  =.+.++..+
T Consensus        88 ~~~~d~vi~n~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~--~~l~~~~~~  163 (188)
T PRK14968         88 GDKFDVILFNPPYLPT-E-EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGE--DEVLEYLEK  163 (188)
T ss_pred             ccCceEEEECCCcCCC-C-chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCH--HHHHHHHHH
Confidence            3489999999997652 1 1100     000    0125668899999999999999988877543211  135667778


Q ss_pred             CCcEEEEE
Q 016441          171 SSLSLIWC  178 (389)
Q Consensus       171 aGL~L~~~  178 (389)
                      +|+.....
T Consensus       164 ~g~~~~~~  171 (188)
T PRK14968        164 LGFEAEVV  171 (188)
T ss_pred             CCCeeeee
Confidence            89876643

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=97.19  E-value=0.013  Score=53.94  Aligned_cols=109  Identities=17%  Similarity=0.323  Sum_probs=71.5

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..++.+||=+|=|.=.++..|++..+....+++.-..  ++..+   .+++++....-..+.++.+ |+.++.    +..
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~~----~~~  112 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFS--ENMLS---VGRQKVKDAGLHNVELVHG-NAMELP----FDD  112 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECC--HHHHH---HHHHHHHhcCCCceEEEEe-chhcCC----CCC
Confidence            3467899999999999999999987655566664443  33332   2556655433223444443 666543    334


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      ..||.|+.++..--.   ++           ...+++.+..+|+++|.+.+..
T Consensus       113 ~~fD~V~~~~~l~~~---~~-----------~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       113 NSFDYVTIGFGLRNV---PD-----------YMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             CCccEEEEecccccC---CC-----------HHHHHHHHHHHcCcCeEEEEEE
Confidence            689999998763221   11           2357788999999999997654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.18  E-value=0.0023  Score=64.31  Aligned_cols=114  Identities=21%  Similarity=0.340  Sum_probs=77.0

Q ss_pred             CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcc
Q 016441           25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFD  104 (389)
Q Consensus        25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FD  104 (389)
                      .+||=+|=|.=.++..|++... ...|+++-.+  ....+   .++.|++.-. ..+.+ +..|+..   .  + ..+||
T Consensus       198 g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis--~~Al~---~A~~nl~~n~-l~~~~-~~~D~~~---~--~-~~~fD  263 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVS--AAALE---SSRATLAANG-LEGEV-FASNVFS---D--I-KGRFD  263 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHHcC-CCCEE-EEccccc---c--c-CCCcc
Confidence            4799999999999999998752 3455554443  33332   2556665421 22333 2335432   1  2 46799


Q ss_pred             eEEEcCC-CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcc
Q 016441          105 RIIFNFP-HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW  162 (389)
Q Consensus       105 rIIFNFP-H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW  162 (389)
                      .||.|.| |.|.   +       .+......|++.|.++|+++|++.|....--||..|
T Consensus       264 lIvsNPPFH~g~---~-------~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~  312 (342)
T PRK09489        264 MIISNPPFHDGI---Q-------TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDL  312 (342)
T ss_pred             EEEECCCccCCc---c-------ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHH
Confidence            9999999 4553   1       234567899999999999999999988887888764

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.17  E-value=0.0006  Score=55.67  Aligned_cols=115  Identities=23%  Similarity=0.211  Sum_probs=75.3

Q ss_pred             CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcc
Q 016441           25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFD  104 (389)
Q Consensus        25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FD  104 (389)
                      .+||=+|=|.=+|+.++++..  ..++++.-.|....-.     ++.|+....-..-.-++.-|++++.+  .+...+||
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~-----a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~~~~~D   72 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVEL-----ARRNLPRNGLDDRVEVIVGDARDLPE--PLPDGKFD   72 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHH-----HHHHCHHCTTTTTEEEEESHHHHHHH--TCTTT-EE
T ss_pred             CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHH-----HHHHHHHccCCceEEEEECchhhchh--hccCceeE
Confidence            467777778878888888764  5788888887543222     34455543322224566667777652  23568899


Q ss_pred             eEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          105 RIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       105 rIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      .||+|-|.......      ....+++...|++.|.++|+++|.+.+.+.
T Consensus        73 ~Iv~npP~~~~~~~------~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   73 LIVTNPPYGPRSGD------KAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             EEEE--STTSBTT----------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECCCCcccccc------chhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            99999999874221      223444888999999999999999988764

...

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.14  E-value=0.012  Score=54.55  Aligned_cols=129  Identities=19%  Similarity=0.170  Sum_probs=91.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=||=|.=.+|..+++... +..  .|+.|..+++.+   .++.|++.+.-.++.++. -|+.++..     ..+
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~-~~~--V~giD~s~~~l~---~A~~~~~~~~l~~i~~~~-~d~~~~~~-----~~~  112 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARP-ELK--VTLVDSLGKKIA---FLREVAAELGLKNVTVVH-GRAEEFGQ-----EEK  112 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCC-CCe--EEEEeCcHHHHH---HHHHHHHHcCCCCEEEEe-ccHhhCCC-----CCC
Confidence            478999999999999999987653 334  455576555544   256666665433455544 47776532     468


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeCC
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                      ||.|+.|.  .+     +           +..|++.+.++|+++|.+.+-....   ..+.++++++..|+.+.+.....
T Consensus       113 fDlV~~~~--~~-----~-----------~~~~l~~~~~~LkpGG~lv~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~  171 (187)
T PRK00107        113 FDVVTSRA--VA-----S-----------LSDLVELCLPLLKPGGRFLALKGRD---PEEEIAELPKALGGKVEEVIELT  171 (187)
T ss_pred             ccEEEEcc--cc-----C-----------HHHHHHHHHHhcCCCeEEEEEeCCC---hHHHHHHHHHhcCceEeeeEEEe
Confidence            99999873  11     1           4579999999999999999886443   56778899999999999887665


Q ss_pred             CC
Q 016441          183 IE  184 (389)
Q Consensus       183 ~~  184 (389)
                      -+
T Consensus       172 ~~  173 (187)
T PRK00107        172 LP  173 (187)
T ss_pred             cC
Confidence            33

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.06  E-value=0.0066  Score=55.51  Aligned_cols=132  Identities=13%  Similarity=0.066  Sum_probs=85.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ++.+||=||=|.=.+|..|+.... ...+  |..|...++.+.   ++.|++.+.-.+++++. -|+.++.     ....
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~-~~~V--~~iD~s~~~~~~---a~~~~~~~~~~~i~~i~-~d~~~~~-----~~~~  109 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARP-ELKL--TLLESNHKKVAF---LREVKAELGLNNVEIVN-GRAEDFQ-----HEEQ  109 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCC-CCeE--EEEeCcHHHHHH---HHHHHHHhCCCCeEEEe-cchhhcc-----ccCC
Confidence            478999999888888888876542 3344  556655544432   45566555323455544 4777752     2468


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeCC
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                      ||.|+.|.  .+     +           +..+++.+..+|+++|.+.+.+-....-.-+.+++.++..|+..+++-+|.
T Consensus       110 fD~I~s~~--~~-----~-----------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  171 (181)
T TIGR00138       110 FDVITSRA--LA-----S-----------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLT  171 (181)
T ss_pred             ccEEEehh--hh-----C-----------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccC
Confidence            99999874  21     1           335777789999999999987633222234455555666899999987776


Q ss_pred             CC
Q 016441          183 IE  184 (389)
Q Consensus       183 ~~  184 (389)
                      -.
T Consensus       172 ~~  173 (181)
T TIGR00138       172 GP  173 (181)
T ss_pred             CC
Confidence            54

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.00  E-value=0.014  Score=53.81  Aligned_cols=140  Identities=16%  Similarity=0.119  Sum_probs=86.0

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF  103 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F  103 (389)
                      ..+||=+|=|.=.|+.++++.+. ...++  +.|......+   .++.|++...-..+.+ ..-|+.+.     +...+|
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~-~~~v~--~iD~~~~~~~---~a~~~~~~~~~~~~~~-~~~d~~~~-----~~~~~f  155 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERP-DARVT--AVDISPEALA---VARKNAARLGLDNVTF-LQSDWFEP-----LPGGKF  155 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCC-CCEEE--EEECCHHHHH---HHHHHHHHcCCCeEEE-EECchhcc-----CcCCce
Confidence            34899999999999999998763 33555  4553333333   3666665432222333 33355431     234789


Q ss_pred             ceEEEcCCCCCCCCCccchHHHHH------------hHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhC
Q 016441          104 DRIIFNFPHAGFYGKEDNHLLIEM------------HRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGS  171 (389)
Q Consensus       104 DrIIFNFPH~G~~gkED~~r~Ir~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~a  171 (389)
                      |.|+.|.|-............++.            .-..+..|++.+..+|+++|.+.+..-.   ...-.++++..++
T Consensus       156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---~~~~~~~~~l~~~  232 (251)
T TIGR03534       156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---DQGEAVRALFEAA  232 (251)
T ss_pred             eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---cHHHHHHHHHHhC
Confidence            999999998763111111111211            1234578999999999999999887532   2234677788888


Q ss_pred             CcEEEEE
Q 016441          172 SLSLIWC  178 (389)
Q Consensus       172 GL~L~~~  178 (389)
                      |+..+..
T Consensus       233 gf~~v~~  239 (251)
T TIGR03534       233 GFADVET  239 (251)
T ss_pred             CCCceEE
Confidence            9865543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.95  E-value=0.015  Score=59.77  Aligned_cols=146  Identities=16%  Similarity=0.186  Sum_probs=93.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++++||=+|=|.=++|..+++..+....|+|.-.+  ++..+   .+++|++.+.-.++.+ ..-|++++...  +. .
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~--~~~l~---~~~~n~~~~g~~~v~~-~~~D~~~~~~~--~~-~  319 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIH--EHKLK---LIEENAKRLGLTNIET-KALDARKVHEK--FA-E  319 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHcCCCeEEE-EeCCcccccch--hc-c
Confidence            467899999999999999999887444456555443  33322   3566765543222333 44577776432  22 6


Q ss_pred             CcceEEEcCCCCCCCCCcc---------chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhhC
Q 016441          102 KFDRIIFNFPHAGFYGKED---------NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIGS  171 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED---------~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~a  171 (389)
                      .||+|+.|-|..|. |.-.         ....+..-..+-..++..|..+|++||.+..+.|+-.|- +...+....++.
T Consensus       320 ~fD~Vl~D~Pcsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~  398 (444)
T PRK14902        320 KFDKILVDAPCSGL-GVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEH  398 (444)
T ss_pred             cCCEEEEcCCCCCC-eeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhC
Confidence            79999999998874 3210         112233334556789999999999999999888876442 455666655543


Q ss_pred             -CcEEEE
Q 016441          172 -SLSLIW  177 (389)
Q Consensus       172 -GL~L~~  177 (389)
                       ++.++.
T Consensus       399 ~~~~~~~  405 (444)
T PRK14902        399 PEFELVP  405 (444)
T ss_pred             CCcEEec
Confidence             455543

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=96.93  E-value=0.02  Score=56.66  Aligned_cols=134  Identities=16%  Similarity=0.159  Sum_probs=86.2

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..++++||=+|=|.=+|...++. .  +..+++.-.|  ..+.+   .++.|++...-.++. +..-|++++..    ..
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~-~--~~~v~g~Di~--~~~~~---~a~~nl~~~g~~~i~-~~~~D~~~l~~----~~  246 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGL-M--GAKVIGCDID--WKMVA---GARINLEHYGIEDFF-VKRGDATKLPL----SS  246 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHH-h--CCeEEEEcCC--HHHHH---HHHHHHHHhCCCCCe-EEecchhcCCc----cc
Confidence            45677888755555555555443 2  3567765443  33333   367777654333333 45668888643    24


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWC  178 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~  178 (389)
                      ..||.||.|-|-....+...     .....|...++..+.++|+++|.+.+.+.+..     .+.++++.+|+ +...
T Consensus       247 ~~~D~Iv~dPPyg~~~~~~~-----~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----~~~~~~~~~g~-i~~~  313 (329)
T TIGR01177       247 ESVDAIATDPPYGRSTTAAG-----DGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----DLESLAEDAFR-VVKR  313 (329)
T ss_pred             CCCCEEEECCCCcCcccccC-----CchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----CHHHHHhhcCc-chhe
Confidence            68999999988643211110     12346789999999999999999998876653     45688999999 6554

This family is found exclusively in the Archaea.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.90  E-value=0.026  Score=58.06  Aligned_cols=148  Identities=18%  Similarity=0.223  Sum_probs=97.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++++||=+|=|-=.+|..|++..+....|+  +.|..+...+   .+++|++.+.-..+ ....-|++++.........
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~--a~D~~~~rl~---~~~~n~~r~g~~~v-~~~~~D~~~~~~~~~~~~~  324 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIW--AVDRSASRLK---KLQENAQRLGLKSI-KILAADSRNLLELKPQWRG  324 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEE--EEcCCHHHHH---HHHHHHHHcCCCeE-EEEeCChhhcccccccccc
Confidence            3467899999999999999988765433454  4564444333   36677665432233 3445788887543222346


Q ss_pred             CcceEEEcCCCCCCCCC----cc-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhh-
Q 016441          102 KFDRIIFNFPHAGFYGK----ED-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIG-  170 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gk----ED-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~-  170 (389)
                      .||+|+.|=|..|. |.    .+     ....+.....|-...+.+|..+|++||.+..+.|+-.|- +.-.|....++ 
T Consensus       325 ~fD~Vl~DaPCSg~-G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~  403 (434)
T PRK14901        325 YFDRILLDAPCSGL-GTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH  403 (434)
T ss_pred             cCCEEEEeCCCCcc-cccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence            79999999999883 32    11     112344455667899999999999999999999987664 45666665444 


Q ss_pred             CCcEEE
Q 016441          171 SSLSLI  176 (389)
Q Consensus       171 aGL~L~  176 (389)
                      .++.+.
T Consensus       404 ~~~~~~  409 (434)
T PRK14901        404 PDWKLE  409 (434)
T ss_pred             CCcEec
Confidence            466644

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=96.86  E-value=0.037  Score=52.55  Aligned_cols=139  Identities=13%  Similarity=0.136  Sum_probs=83.8

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ...++++||-||=|.=-.+..+++..+....|++.-..  ++..+   .+++|.+.+.-..++++. -|+..|.    +.
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s--~~~l~---~A~~~~~~~g~~~v~~~~-~d~~~l~----~~  143 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMT--PEMLA---KARANARKAGYTNVEFRL-GEIEALP----VA  143 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCC--HHHHH---HHHHHHHHcCCCCEEEEE-cchhhCC----CC
Confidence            45678899999999866666667766644467665443  33333   255665544322344333 3565543    33


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec--CCC------------------CC
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK--TTV------------------PF  159 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk--~g~------------------PY  159 (389)
                      ...||.|+.|.-..-.   .+           ....|+.+..+|++||.+.++=.  .+.                  .+
T Consensus       144 ~~~fD~Vi~~~v~~~~---~d-----------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (272)
T PRK11873        144 DNSVDVIISNCVINLS---PD-----------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGAL  209 (272)
T ss_pred             CCceeEEEEcCcccCC---CC-----------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCC
Confidence            4689999988532111   11           13567888999999999998521  111                  12


Q ss_pred             CcccHHHHHhhCCcEEEEEeeCC
Q 016441          160 SNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       160 ~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                      ....+.++.+++|+..+......
T Consensus       210 ~~~e~~~~l~~aGf~~v~i~~~~  232 (272)
T PRK11873        210 QEEEYLAMLAEAGFVDITIQPKR  232 (272)
T ss_pred             CHHHHHHHHHHCCCCceEEEecc
Confidence            23356667778888877655443

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=96.83  E-value=0.039  Score=50.50  Aligned_cols=133  Identities=18%  Similarity=0.157  Sum_probs=80.9

Q ss_pred             CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcc
Q 016441           25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFD  104 (389)
Q Consensus        25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FD  104 (389)
                      ++||=||-|.=.++..+++.++ ..++++..+ |.+.+.    .+..+++...-.+-.-....|+.+..    + ...||
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~-s~~~~~----~a~~~~~~~gl~~~i~~~~~d~~~~~----~-~~~fD   69 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTI-SPEQAE----VGRERIRALGLQGRIRIFYRDSAKDP----F-PDTYD   69 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEEC-CHHHHH----HHHHHHHhcCCCcceEEEecccccCC----C-CCCCC
Confidence            3789999988888999998874 346666555 333221    24445433211111122335665431    1 24799


Q ss_pred             eEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-------------CcccHHHHHh
Q 016441          105 RIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-------------SNWNIKELAI  169 (389)
Q Consensus       105 rIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-------------~sWnIe~LAa  169 (389)
                      .|+-+  +-|++.                ...+|+++..+|+|+|.+.++-......             +.=.+.++.+
T Consensus        70 ~I~~~~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~  133 (224)
T smart00828       70 LVFGFEVIHHIKD----------------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLA  133 (224)
T ss_pred             EeehHHHHHhCCC----------------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHH
Confidence            99854  233321                3589999999999999998864311111             1113456788


Q ss_pred             hCCcEEEEEeeCCCC
Q 016441          170 GSSLSLIWCSEFKIE  184 (389)
Q Consensus       170 ~aGL~L~~~~~F~~~  184 (389)
                      ++||.+.+...+...
T Consensus       134 ~~Gf~~~~~~~~~~~  148 (224)
T smart00828      134 RNNLRVVEGVDASLE  148 (224)
T ss_pred             HCCCeEEEeEECcHh
Confidence            899999999888654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.78  E-value=0.016  Score=63.40  Aligned_cols=160  Identities=16%  Similarity=0.087  Sum_probs=98.7

Q ss_pred             hhccccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccC
Q 016441           12 EKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDAT   90 (389)
Q Consensus        12 ~~~~K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDAT   90 (389)
                      .+..+|+..+.++.+||=+|=|.=.||+++++. | +..|  |+.|..+...+   -++.|++...-. .-.-+..-|+.
T Consensus       527 r~~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V--~~vD~s~~al~---~a~~N~~~ng~~~~~v~~i~~D~~  599 (702)
T PRK11783        527 RPTRRMIGQMAKGKDFLNLFAYTGTASVHAALG-G-AKST--TTVDMSNTYLE---WAERNFALNGLSGRQHRLIQADCL  599 (702)
T ss_pred             HHHHHHHHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEE--EEEeCCHHHHH---HHHHHHHHhCCCccceEEEEccHH
Confidence            345678888889999999999888899988874 3 3344  55664444443   367777553211 11123445654


Q ss_pred             CCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhh
Q 016441           91 TMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIG  170 (389)
Q Consensus        91 kL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~  170 (389)
                      +.-+.  + ..+||.||.|-|-.+. ++..  ..+..-..-....+..|.++|+++|.+.++.+... +..  ..+.+.+
T Consensus       600 ~~l~~--~-~~~fDlIilDPP~f~~-~~~~--~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~--~~~~~~~  670 (702)
T PRK11783        600 AWLKE--A-REQFDLIFIDPPTFSN-SKRM--EDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKM--DEEGLAK  670 (702)
T ss_pred             HHHHH--c-CCCcCEEEECCCCCCC-CCcc--chhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CCh--hHHHHHh
Confidence            42111  1 4679999999998773 3220  01111122344567778999999999988776543 332  2667778


Q ss_pred             CCcEEEEEe-eCCCCCCC
Q 016441          171 SSLSLIWCS-EFKIEDYP  187 (389)
Q Consensus       171 aGL~L~~~~-~F~~~~YP  187 (389)
                      +|+.+.... .-.+.|+|
T Consensus       671 ~g~~~~~i~~~~~~~Dhp  688 (702)
T PRK11783        671 LGLKAEEITAKTLPPDFA  688 (702)
T ss_pred             CCCeEEEEecCCCCCCCC
Confidence            888777644 44566666

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.74  E-value=0.038  Score=56.75  Aligned_cols=145  Identities=18%  Similarity=0.194  Sum_probs=95.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++++||=+|=|-=.++..+++..+ +..|+  +.|......+   .+++|++.+. ..++ +...|++++...  +...
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~--a~D~s~~~l~---~~~~n~~~~g-~~~~-~~~~D~~~~~~~--~~~~  312 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAP-QAQVV--ALDIDAQRLE---RVRENLQRLG-LKAT-VIVGDARDPAQW--WDGQ  312 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcC-CCEEE--EEeCCHHHHH---HHHHHHHHcC-CCeE-EEEcCcccchhh--cccC
Confidence            4678999999999999999988753 23454  4554343333   3566665532 1233 445688876432  2346


Q ss_pred             CcceEEEcCCCCCCCCCc----c-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-CCcccHHHHHhh-
Q 016441          102 KFDRIIFNFPHAGFYGKE----D-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-FSNWNIKELAIG-  170 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkE----D-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sWnIe~LAa~-  170 (389)
                      .||+|+.|=|..|. |.-    +     ....+.....+...++..|..+|++||.+.++.|.-.| -+..+|....++ 
T Consensus       313 ~fD~Vl~D~Pcs~~-G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~  391 (427)
T PRK10901        313 PFDRILLDAPCSAT-GVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARH  391 (427)
T ss_pred             CCCEEEECCCCCcc-cccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhC
Confidence            79999999998873 310    1     11234444567789999999999999999999986554 355677665544 


Q ss_pred             CCcEEEE
Q 016441          171 SSLSLIW  177 (389)
Q Consensus       171 aGL~L~~  177 (389)
                      .++.+..
T Consensus       392 ~~~~~~~  398 (427)
T PRK10901        392 PDAELLD  398 (427)
T ss_pred             CCCEEec
Confidence            4676654

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.73  E-value=0.034  Score=52.32  Aligned_cols=142  Identities=15%  Similarity=0.109  Sum_probs=87.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=+|-|.=.++.+|++... ...++++-.+  ....+   .++.|++......+.++. .|+.+.     +...
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis--~~~l~---~a~~n~~~~~~~~i~~~~-~d~~~~-----~~~~  174 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDIS--PEALA---VARRNAKHGLGARVEFLQ-GDWFEP-----LPGG  174 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECC--HHHHH---HHHHHHHhCCCCcEEEEE-ccccCc-----CCCC
Confidence            4566899999999999999998763 3456666443  33322   366777611122344433 355321     2246


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHH------------HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIE------------MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI  169 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir------------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa  169 (389)
                      +||.||.|.|-............++            ..-+++..|++.|..+|+++|.+.+.+-.   ...-.+.++.+
T Consensus       175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---~~~~~~~~~l~  251 (275)
T PRK09328        175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---DQGEAVRALLA  251 (275)
T ss_pred             ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---hHHHHHHHHHH
Confidence            8999999999886411111111122            12356788999999999999999986522   12234777777


Q ss_pred             hCCcEEEEE
Q 016441          170 GSSLSLIWC  178 (389)
Q Consensus       170 ~aGL~L~~~  178 (389)
                      +.|+.-+..
T Consensus       252 ~~gf~~v~~  260 (275)
T PRK09328        252 AAGFADVET  260 (275)
T ss_pred             hCCCceeEE
Confidence            888864443

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.72  E-value=0.036  Score=53.36  Aligned_cols=143  Identities=14%  Similarity=0.148  Sum_probs=96.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++++||=+|=|-=.+|..||...+....|+  +.|......+   .+++|++.+.-..+ .+..-|++++...    ..
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~--a~D~~~~~l~---~~~~n~~~~g~~~v-~~~~~D~~~~~~~----~~  139 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIV--ANEFSKSRTK---VLIANINRCGVLNV-AVTNFDGRVFGAA----VP  139 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEE--EEcCCHHHHH---HHHHHHHHcCCCcE-EEecCCHHHhhhh----cc
Confidence            4578899999999999999988775433454  4554443332   36777766532223 3455677765432    24


Q ss_pred             CcceEEEcCCCCCCCCCc----c-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhh-
Q 016441          102 KFDRIIFNFPHAGFYGKE----D-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIG-  170 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkE----D-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~-  170 (389)
                      .||+|+.|=|..|. |.-    +     ..+.+.....+-...+.+|..+|+++|.+..+.|+-.|- +...|..+.++ 
T Consensus       140 ~fD~Vl~D~Pcsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~  218 (264)
T TIGR00446       140 KFDAILLDAPCSGE-GVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR  218 (264)
T ss_pred             CCCEEEEcCCCCCC-cccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence            59999999999984 311    0     223444555677889999999999999999999987664 56777776554 


Q ss_pred             CCcEE
Q 016441          171 SSLSL  175 (389)
Q Consensus       171 aGL~L  175 (389)
                      .++.+
T Consensus       219 ~~~~~  223 (264)
T TIGR00446       219 PDVVE  223 (264)
T ss_pred             CCcEE
Confidence            35543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.72  E-value=0.0085  Score=61.42  Aligned_cols=135  Identities=13%  Similarity=0.177  Sum_probs=87.3

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC---CEEEeccccCCCCCCCCcCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG---TCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G---v~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+||=+|=|+=-.+..|++.+. ...|+++-.+ +..+ +   .++.|++.....+   +.++. -|+   -+  .+..
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S-~~Av-~---~A~~N~~~n~~~~~~~v~~~~-~D~---l~--~~~~  296 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDES-PMAV-A---SSRLNVETNMPEALDRCEFMI-NNA---LS--GVEP  296 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCEEEEEECC-HHHH-H---HHHHHHHHcCcccCceEEEEE-ccc---cc--cCCC
Confidence            35899999999999999988753 4456665433 3333 2   3667775443211   23322 122   11  1234


Q ss_pred             CCcceEEEcCC-CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcc------cHHHHHhhCCc
Q 016441          101 RKFDRIIFNFP-HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW------NIKELAIGSSL  173 (389)
Q Consensus       101 ~~FDrIIFNFP-H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW------nIe~LAa~aGL  173 (389)
                      .+||.|+.|-| |.|. ..         ...+...+|+.|..+|+++|++.|-.....+|..|      +++.+|+..+|
T Consensus       297 ~~fDlIlsNPPfh~~~-~~---------~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~~~va~~~kf  366 (378)
T PRK15001        297 FRFNAVLCNPPFHQQH-AL---------TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKF  366 (378)
T ss_pred             CCEEEEEECcCcccCc-cC---------CHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCceEEccCCCE
Confidence            57999999999 6663 11         22356789999999999999999987665666433      34556778888


Q ss_pred             EEEEEee
Q 016441          174 SLIWCSE  180 (389)
Q Consensus       174 ~L~~~~~  180 (389)
                      ++.+.++
T Consensus       367 ~vl~a~k  373 (378)
T PRK15001        367 VVLKAVK  373 (378)
T ss_pred             EEEEEEe
Confidence            8887765

>PRK14967 putative methyltransferase; Provisional

Probab=96.71  E-value=0.057  Score=50.21  Aligned_cols=141  Identities=14%  Similarity=0.118  Sum_probs=85.6

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..++.+||-+|=|.=.++..+++. + ...+++.-.+.  +..+   -++.|++... ..+.++ .-|+.+.     +..
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~--~~l~---~a~~n~~~~~-~~~~~~-~~d~~~~-----~~~   99 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISR--RAVR---SARLNALLAG-VDVDVR-RGDWARA-----VEF   99 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCH--HHHH---HHHHHHHHhC-CeeEEE-ECchhhh-----ccC
Confidence            345789999999998888888874 3 34676665543  2222   2556665432 223333 3455432     234


Q ss_pred             CCcceEEEcCCCCCCCCCccchH-H-----H-HHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCc
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHL-L-----I-EMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSL  173 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r-~-----I-r~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL  173 (389)
                      ..||.||.|-|...........+ .     . .....++..|++.|..+|+++|.+.+.+.+-.  +.-++.++.++.|+
T Consensus       100 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~~~~~~~l~~~g~  177 (223)
T PRK14967        100 RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GVERTLTRLSEAGL  177 (223)
T ss_pred             CCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CHHHHHHHHHHCCC
Confidence            68999999977654211000000 0     0 11345688999999999999999998766542  22356667777787


Q ss_pred             EEEE
Q 016441          174 SLIW  177 (389)
Q Consensus       174 ~L~~  177 (389)
                      .+..
T Consensus       178 ~~~~  181 (223)
T PRK14967        178 DAEV  181 (223)
T ss_pred             CeEE
Confidence            5444

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.70  E-value=0.045  Score=56.55  Aligned_cols=142  Identities=16%  Similarity=0.201  Sum_probs=96.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeccccCCCCCCCCcC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC--ILHGVDATTMELHPDLR   99 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~--VlfgVDATkL~~~~~Lk   99 (389)
                      .++++||=+|-|-=.+|..|++..+....|  |+.|..+...+   .+++|++.+   |+.  ....-|+.++.     .
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V--~avD~s~~~l~---~~~~~~~~~---g~~~v~~~~~Da~~~~-----~  315 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQI--TAVDRYPQKLE---KIRSHASAL---GITIIETIEGDARSFS-----P  315 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEE--EEEECCHHHHH---HHHHHHHHh---CCCeEEEEeCcccccc-----c
Confidence            456889999999888999998876433344  45565554444   256666554   432  33456777653     2


Q ss_pred             CCCcceEEEcCCCCCCCCC---c------cchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHh
Q 016441          100 TRKFDRIIFNFPHAGFYGK---E------DNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAI  169 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gk---E------D~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa  169 (389)
                      ...||+|+.+=|..|. |.   .      .....+.....+-..++.+|..+|++||.+..+.|+-.|- +..+|....+
T Consensus       316 ~~~fD~Vl~D~Pcsg~-g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~  394 (445)
T PRK14904        316 EEQPDAILLDAPCTGT-GVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQ  394 (445)
T ss_pred             CCCCCEEEEcCCCCCc-chhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence            3579999999999884 32   0      1123344445566789999999999999999999988764 5788877655


Q ss_pred             hC-CcEEEE
Q 016441          170 GS-SLSLIW  177 (389)
Q Consensus       170 ~a-GL~L~~  177 (389)
                      +. ++.+..
T Consensus       395 ~~~~~~~~~  403 (445)
T PRK14904        395 RHPEFSAEP  403 (445)
T ss_pred             hCCCCEEec
Confidence            44 565543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=96.70  E-value=0.078  Score=47.38  Aligned_cols=138  Identities=16%  Similarity=0.176  Sum_probs=85.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=+|=|.=.++.++++..  + .+++.-++  .++.+   .++.|++... ..+.+ ...|+.+..      ...
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~--~-~v~~vD~s--~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~------~~~   82 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKG--K-CILTTDIN--PFAVK---ELRENAKLNN-VGLDV-VMTDLFKGV------RGK   82 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcC--C-EEEEEECC--HHHHH---HHHHHHHHcC-CceEE-EEccccccc------CCc
Confidence            44689999999999999998753  2 56665444  33332   2566665322 22333 334554421      247


Q ss_pred             cceEEEcCCCCCCCCCc--cchHHHH-----HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEE
Q 016441          103 FDRIIFNFPHAGFYGKE--DNHLLIE-----MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSL  175 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkE--D~~r~Ir-----~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L  175 (389)
                      ||.|+.|-|+.-.....  +....+.     ....++..|++.+..+|+++|.+.+......  +.=.+.++.++.|+.+
T Consensus        83 fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~~  160 (179)
T TIGR00537        83 FDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFRY  160 (179)
T ss_pred             ccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCeE
Confidence            99999999986431110  1111111     2356789999999999999999887654322  1224566677778776


Q ss_pred             EEE
Q 016441          176 IWC  178 (389)
Q Consensus       176 ~~~  178 (389)
                      ...
T Consensus       161 ~~~  163 (179)
T TIGR00537       161 EIV  163 (179)
T ss_pred             EEE
Confidence            653

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=96.61  E-value=0.048  Score=52.31  Aligned_cols=141  Identities=17%  Similarity=0.094  Sum_probs=87.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      +...+||=+|=|.=.++++|++... +..++|.-.+  .+..+   .++.|++.   .|++++ .-|+.+.-.. .+ ..
T Consensus        85 ~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis--~~al~---~A~~N~~~---~~~~~~-~~D~~~~l~~-~~-~~  152 (251)
T TIGR03704        85 SGTLVVVDLCCGSGAVGAALAAALD-GIELHAADID--PAAVR---CARRNLAD---AGGTVH-EGDLYDALPT-AL-RG  152 (251)
T ss_pred             CCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHH---cCCEEE-Eeechhhcch-hc-CC
Confidence            3345899999999889999987753 3467665433  33332   25667654   345553 3465442111 11 25


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHh------------HHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMH------------RSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI  169 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~n------------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa  169 (389)
                      +||.||+|-|-............++.+            .++++.++.+|..+|+++|.+.+.+-..+   .-.+.++.+
T Consensus       153 ~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~---~~~v~~~l~  229 (251)
T TIGR03704       153 RVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ---APLAVEAFA  229 (251)
T ss_pred             CEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch---HHHHHHHHH
Confidence            799999999988631110011112222            34578999999999999999998876543   336778888


Q ss_pred             hCCcEEEE
Q 016441          170 GSSLSLIW  177 (389)
Q Consensus       170 ~aGL~L~~  177 (389)
                      +.||...-
T Consensus       230 ~~g~~~~~  237 (251)
T TIGR03704       230 RAGLIARV  237 (251)
T ss_pred             HCCCCcee
Confidence            88875443

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=96.58  E-value=0.0079  Score=55.48  Aligned_cols=144  Identities=19%  Similarity=0.225  Sum_probs=88.6

Q ss_pred             ccccCCCC-CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEecccc-CCCC
Q 016441           16 KWIKHYSS-NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDA-TTME   93 (389)
Q Consensus        16 K~~~~Yss-~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDA-TkL~   93 (389)
                      .|...|.. ..+||=+|=|.=.++..|++.+. ..+++|.-.+.  +..+   .+.++++...-.++.++. -|+ ..+.
T Consensus        32 ~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~--~~i~---~a~~~~~~~~~~~v~~~~-~d~~~~l~  104 (202)
T PRK00121         32 DWAELFGNDAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHE--PGVG---KALKKIEEEGLTNLRLLC-GDAVEVLL  104 (202)
T ss_pred             CHHHHcCCCCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEech--HHHH---HHHHHHHHcCCCCEEEEe-cCHHHHHH
Confidence            55555555 55799999999999999988763 34676665553  2222   255555443222344433 466 5443


Q ss_pred             CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCc
Q 016441           94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSL  173 (389)
Q Consensus        94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL  173 (389)
                      ..  +....||.|+.|||....+...+      ..+.+...|++.+..+|+++|.+.++...-. + ...+.+...+.|+
T Consensus       105 ~~--~~~~~~D~V~~~~~~p~~~~~~~------~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~-~-~~~~~~~~~~~g~  174 (202)
T PRK00121        105 DM--FPDGSLDRIYLNFPDPWPKKRHH------KRRLVQPEFLALYARKLKPGGEIHFATDWEG-Y-AEYMLEVLSAEGG  174 (202)
T ss_pred             HH--cCccccceEEEECCCCCCCcccc------ccccCCHHHHHHHHHHcCCCCEEEEEcCCHH-H-HHHHHHHHHhCcc
Confidence            21  33467999999998543211111      1233467899999999999999998764321 2 2345666666777


Q ss_pred             EEE
Q 016441          174 SLI  176 (389)
Q Consensus       174 ~L~  176 (389)
                      ...
T Consensus       175 ~~~  177 (202)
T PRK00121        175 FLV  177 (202)
T ss_pred             ccc
Confidence            554

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=96.56  E-value=0.034  Score=54.42  Aligned_cols=129  Identities=22%  Similarity=0.319  Sum_probs=78.9

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC----CEEEeccccCCCCCCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG----TCILHGVDATTMELHP   96 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G----v~VlfgVDATkL~~~~   96 (389)
                      -.++++||=+|=|-=+++.-+|+.+|  .+|++-++. .++..    .+++   .+++.|    +.|.. .|..++..  
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS-~~Q~~----~a~~---~~~~~gl~~~v~v~~-~D~~~~~~--  126 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLS-EEQAE----YARE---RIREAGLEDRVEVRL-QDYRDLPG--  126 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES--HHHHH----HHHH---HHHCSTSSSTEEEEE-S-GGG-----
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECC-HHHHH----HHHH---HHHhcCCCCceEEEE-eeccccCC--
Confidence            55789999999999999999999985  567776653 33221    1333   344455    44444 57665432  


Q ss_pred             CcCCCCcceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec---CCC--------------
Q 016441           97 DLRTRKFDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK---TTV--------------  157 (389)
Q Consensus        97 ~Lk~~~FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk---~g~--------------  157 (389)
                           +||+||--  |-|+|.   ++           ...||+.+..+|+|||.+.|...   +..              
T Consensus       127 -----~fD~IvSi~~~Ehvg~---~~-----------~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~k  187 (273)
T PF02353_consen  127 -----KFDRIVSIEMFEHVGR---KN-----------YPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRK  187 (273)
T ss_dssp             -----S-SEEEEESEGGGTCG---GG-----------HHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHH
T ss_pred             -----CCCEEEEEechhhcCh---hH-----------HHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEE
Confidence                 89999876  999984   21           55899999999999998865432   110              


Q ss_pred             ---C----CCcccHHHHHhhCCcEEEEEeeC
Q 016441          158 ---P----FSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       158 ---P----Y~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                         |    -+.-.|...++++||.+.....+
T Consensus       188 yiFPgg~lps~~~~~~~~~~~~l~v~~~~~~  218 (273)
T PF02353_consen  188 YIFPGGYLPSLSEILRAAEDAGLEVEDVENL  218 (273)
T ss_dssp             HTSTTS---BHHHHHHHHHHTT-EEEEEEE-
T ss_pred             eeCCCCCCCCHHHHHHHHhcCCEEEEEEEEc
Confidence               1    12345566678889998877654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.54  E-value=0.055  Score=52.85  Aligned_cols=135  Identities=20%  Similarity=0.220  Sum_probs=82.5

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      +..+||=+|=|.=.++.+|++... ...++|  .|-..+..+   -|+.|++...-. .+.++. -|+.+     .+...
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~-~~~v~a--vDis~~al~---~A~~n~~~~~~~~~i~~~~-~D~~~-----~~~~~  188 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFP-EAEVDA--VDISPDALA---VAEINIERHGLEDRVTLIQ-SDLFA-----ALPGR  188 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCC-CCEEEE--EECCHHHHH---HHHHHHHHcCCCCcEEEEE-Cchhh-----ccCCC
Confidence            346899999999999999998753 345555  453333333   266676544211 133333 35532     12345


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHH-----------HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhh
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIE-----------MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIG  170 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir-----------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~  170 (389)
                      +||.||.|=|-............++           .--++...+++.|.++|+++|.+.+.+-..+   . .+.++...
T Consensus       189 ~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~---~-~v~~~~~~  264 (284)
T TIGR03533       189 KYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM---E-ALEEAYPD  264 (284)
T ss_pred             CccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH---H-HHHHHHHh
Confidence            7999999998876311111111111           1124678899999999999999998775322   1 56666666


Q ss_pred             CCc
Q 016441          171 SSL  173 (389)
Q Consensus       171 aGL  173 (389)
                      .|+
T Consensus       265 ~~~  267 (284)
T TIGR03533       265 VPF  267 (284)
T ss_pred             CCC
Confidence            664

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.53  E-value=0.064  Score=55.53  Aligned_cols=144  Identities=17%  Similarity=0.138  Sum_probs=95.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeccccCCCCCCCCcC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC--ILHGVDATTMELHPDLR   99 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~--VlfgVDATkL~~~~~Lk   99 (389)
                      .++.+||=+|=|-=..|..++...+....|+|.  |-.+...+   .+++|++.+   |+.  .....|++++...   .
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~--Dis~~rl~---~~~~n~~r~---g~~~v~~~~~Da~~l~~~---~  304 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAV--DISREKIQ---LVEKHAKRL---KLSSIEIKIADAERLTEY---V  304 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEE--ECCHHHHH---HHHHHHHHc---CCCeEEEEECchhhhhhh---h
Confidence            456789888888778888888776544566665  43332222   366676544   432  3445688876432   2


Q ss_pred             CCCcceEEEcCCCCCCCCCcc---------chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-CCcccHHHHHh
Q 016441          100 TRKFDRIIFNFPHAGFYGKED---------NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-FSNWNIKELAI  169 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED---------~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sWnIe~LAa  169 (389)
                      ...||+|+.|=|..|. |.-.         ....+.....+-...+.+|.++|++||.+..+.|+-.| -+..+|.+..+
T Consensus       305 ~~~fD~Vl~DaPCsg~-G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~  383 (431)
T PRK14903        305 QDTFDRILVDAPCTSL-GTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY  383 (431)
T ss_pred             hccCCEEEECCCCCCC-ccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence            3579999999999885 4311         11233344456678899999999999999999998765 36778877544


Q ss_pred             -hCCcEEEE
Q 016441          170 -GSSLSLIW  177 (389)
Q Consensus       170 -~aGL~L~~  177 (389)
                       +.++.+..
T Consensus       384 ~~~~~~~~~  392 (431)
T PRK14903        384 EQKDAEVID  392 (431)
T ss_pred             hCCCcEEec
Confidence             55776654

>PRK01581 speE spermidine synthase; Validated

Probab=96.44  E-value=0.024  Score=58.39  Aligned_cols=143  Identities=15%  Similarity=0.185  Sum_probs=89.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHH-HHHHHHHhCCCEEEeccccCC-CCCCCCc
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAK-SNLDNLKKLGTCILHGVDATT-MELHPDL   98 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~-~Ni~~Lr~~Gv~VlfgVDATk-L~~~~~L   98 (389)
                      .+..+||++|=|+-..++.+++. ....+|++--+|.+ -++.++|+.-. -|-..+....++|+++ ||.+ |..    
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~-Da~~fL~~----  222 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC-DAKEFLSS----  222 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEEC-cHHHHHHh----
Confidence            34468999999998877777764 34568888888853 23333332210 1111223345555554 4544 222    


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCc----ccHHHHHhhCCcE
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSN----WNIKELAIGSSLS  174 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s----WnIe~LAa~aGL~  174 (389)
                      ...+||.||-++|..-...         ..+..-..||+.|+..|+++|.+.+.  .+.|...    |.+.+.-+++++.
T Consensus       223 ~~~~YDVIIvDl~DP~~~~---------~~~LyT~EFy~~~~~~LkPgGV~V~Q--s~sp~~~~~~~~~i~~tL~~af~~  291 (374)
T PRK01581        223 PSSLYDVIIIDFPDPATEL---------LSTLYTSELFARIATFLTEDGAFVCQ--SNSPADAPLVYWSIGNTIEHAGLT  291 (374)
T ss_pred             cCCCccEEEEcCCCccccc---------hhhhhHHHHHHHHHHhcCCCcEEEEe--cCChhhhHHHHHHHHHHHHHhCCc
Confidence            2357999999998743200         12333478999999999999987655  3345433    8888888888887


Q ss_pred             EEEEeeC
Q 016441          175 LIWCSEF  181 (389)
Q Consensus       175 L~~~~~F  181 (389)
                      ...-.-+
T Consensus       292 v~~y~t~  298 (374)
T PRK01581        292 VKSYHTI  298 (374)
T ss_pred             eEEEEEe
Confidence            7754444

>PRK03612 spermidine synthase; Provisional

Probab=96.42  E-value=0.025  Score=59.81  Aligned_cols=136  Identities=19%  Similarity=0.254  Sum_probs=86.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhH-HHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRA-KSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A-~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      .+.++||.+|=|+-..+..++++ +....+++--.|.+ -++.++++.. .-|-..+.+..++++.+ |+.+.-..   .
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~-Da~~~l~~---~  370 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVND-DAFNWLRK---L  370 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEC-hHHHHHHh---C
Confidence            34678999999999999998874 33357887777743 1222221100 00111233445777666 77763211   1


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC----CcccHHHHHhhCCc
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF----SNWNIKELAIGSSL  173 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY----~sWnIe~LAa~aGL  173 (389)
                      ..+||.||-|+|+....+         ..+-.-..||+.++++|+++|.+.+..  +.|+    .-|.+.+..++.|+
T Consensus       371 ~~~fDvIi~D~~~~~~~~---------~~~L~t~ef~~~~~~~L~pgG~lv~~~--~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        371 AEKFDVIIVDLPDPSNPA---------LGKLYSVEFYRLLKRRLAPDGLLVVQS--TSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             CCCCCEEEEeCCCCCCcc---------hhccchHHHHHHHHHhcCCCeEEEEec--CCcccchHHHHHHHHHHHHcCC
Confidence            358999999999764211         122223679999999999999988765  3343    34888888888988

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.29  E-value=0.043  Score=49.51  Aligned_cols=118  Identities=16%  Similarity=0.065  Sum_probs=76.8

Q ss_pred             cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCC--
Q 016441           19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHP--   96 (389)
Q Consensus        19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~--   96 (389)
                      ....++++||-+|=|.=.++..+++.......|+|.-.+..  .              +..++.+ +..|+++.....  
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~--~--------------~~~~i~~-~~~d~~~~~~~~~l   90 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM--K--------------PIENVDF-IRGDFTDEEVLNKI   90 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc--c--------------cCCCceE-EEeeCCChhHHHHH
Confidence            33467889999999999999999887654557888766532  1              1235553 344776532100  


Q ss_pred             --CcCCCCcceEEEcC-CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441           97 --DLRTRKFDRIIFNF-PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus        97 --~Lk~~~FDrIIFNF-PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                        .+....||.|+.|. ||..+  .....  .-...+++..++..+..+|+++|.+.+...+..
T Consensus        91 ~~~~~~~~~D~V~~~~~~~~~g--~~~~~--~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~  150 (188)
T TIGR00438        91 RERVGDDKVDVVMSDAAPNISG--YWDID--HLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE  150 (188)
T ss_pred             HHHhCCCCccEEEcCCCCCCCC--Ccccc--HHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc
Confidence              12346799999987 56432  11111  112345678899999999999999999765443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.26  E-value=0.084  Score=42.57  Aligned_cols=112  Identities=15%  Similarity=0.200  Sum_probs=70.5

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ++.+||=+|=|.=+++..|++.+. +..++|.-++  +++.+   .+++++.+.....-.-++.-|+ .....   ...+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~i~~~~~d~-~~~~~---~~~~   70 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDIS--PEMLE---IARERAAEEGLSDRITFVQGDA-EFDPD---FLEP   70 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESS--HHHHH---HHHHHHHHTTTTTTEEEEESCC-HGGTT---TSSC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCC--HHHHH---HHHHHHHhcCCCCCeEEEECcc-ccCcc---cCCC
Confidence            468999999999999999999653 4567766554  33333   2566664422222222344566 11111   1356


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      ||.|+.+. .+...-       +  +.+-...+++.+.++|+|+|.+.|+-+
T Consensus        71 ~D~v~~~~-~~~~~~-------~--~~~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   71 FDLVICSG-FTLHFL-------L--PLDERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             EEEEEECS-GSGGGC-------C--HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             CCEEEECC-Cccccc-------c--chhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            99999998 432100       0  113456778899999999999999753

...

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.24  E-value=0.066  Score=40.01  Aligned_cols=103  Identities=18%  Similarity=0.244  Sum_probs=65.6

Q ss_pred             eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcce
Q 016441           26 QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDR  105 (389)
Q Consensus        26 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDr  105 (389)
                      +||-+|.|.-.++..+++ . ....+++...+...  ...   ++.+........+++ ...|+.+...   .....||.
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~--~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~d~   69 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVA--LEL---ARKAAAALLADNVEV-LKGDAEELPP---EADESFDV   69 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHH--HHH---HHHHHhcccccceEE-EEcChhhhcc---ccCCceEE
Confidence            578899999999998887 2 34577777665322  111   111111111122333 4456666443   23467999


Q ss_pred             EEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          106 IIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       106 IIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      |+.|.|.-..             ......+++.+..+|+++|.+.++
T Consensus        70 i~~~~~~~~~-------------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          70 IISDPPLHHL-------------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EEEccceeeh-------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            9999986542             345668888889999999999887

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.22  E-value=0.16  Score=52.13  Aligned_cols=142  Identities=18%  Similarity=0.210  Sum_probs=94.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE---eccccCCCCCCCCc
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL---HGVDATTMELHPDL   98 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl---fgVDATkL~~~~~L   98 (389)
                      .++++||=+|=|-=.+|..+++..+ ...|+|.  |......+   .+++|++.   .|+.+.   ..-|+..+...  .
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~--D~~~~~l~---~~~~n~~r---~g~~~~v~~~~~d~~~~~~~--~  305 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAP-QAQVVAL--DIHEHRLK---RVYENLKR---LGLTIKAETKDGDGRGPSQW--A  305 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEE--eCCHHHHH---HHHHHHHH---cCCCeEEEEecccccccccc--c
Confidence            4578999999999999999998765 3456655  54333332   25666654   455421   23344433221  2


Q ss_pred             CCCCcceEEEcCCCCCCCCC----cc-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-CCcccHHHHH
Q 016441           99 RTRKFDRIIFNFPHAGFYGK----ED-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-FSNWNIKELA  168 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gk----ED-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sWnIe~LA  168 (389)
                      ....||+|+-+=|..|. |.    .+     ....+..-..|-..++.+|..+|++||.+.++.|+-.| -+.+.|..+-
T Consensus       306 ~~~~fD~VllDaPcSg~-G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l  384 (426)
T TIGR00563       306 ENEQFDRILLDAPCSAT-GVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFL  384 (426)
T ss_pred             cccccCEEEEcCCCCCC-cccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHH
Confidence            34679999999999985 32    11     22344455567788999999999999999999998766 3677887755


Q ss_pred             hhC-CcEE
Q 016441          169 IGS-SLSL  175 (389)
Q Consensus       169 a~a-GL~L  175 (389)
                      ++. ++.+
T Consensus       385 ~~~~~~~~  392 (426)
T TIGR00563       385 QEHPDFPF  392 (426)
T ss_pred             HhCCCCee
Confidence            543 5543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.10  E-value=0.054  Score=55.73  Aligned_cols=160  Identities=18%  Similarity=0.156  Sum_probs=94.4

Q ss_pred             hccccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh--CCCEEEeccccC
Q 016441           13 KEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK--LGTCILHGVDAT   90 (389)
Q Consensus        13 ~~~K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~--~Gv~VlfgVDAT   90 (389)
                      +..+|+..+.++.+||=+|=|.=.|+++.+.. + +..|++  .|..+...+   -+++|++...-  ..+.++ .-|+.
T Consensus       210 ~~R~~~~~~~~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~--VD~s~~al~---~a~~N~~~Ngl~~~~v~~i-~~D~~  281 (396)
T PRK15128        210 DSRLATRRYVENKRVLNCFSYTGGFAVSALMG-G-CSQVVS--VDTSQEALD---IARQNVELNKLDLSKAEFV-RDDVF  281 (396)
T ss_pred             HHHHHHHHhcCCCeEEEeccCCCHHHHHHHhC-C-CCEEEE--EECCHHHHH---HHHHHHHHcCCCCCcEEEE-EccHH
Confidence            34566777788899998888877777766542 2 345554  564444443   36777765431  123333 33665


Q ss_pred             CCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCc----ccHHH
Q 016441           91 TMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSN----WNIKE  166 (389)
Q Consensus        91 kL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s----WnIe~  166 (389)
                      +.-......+.+||.||.|=|-... +++    .+..-..-...++..|.++|+++|.+..+.|.+. .+.    .-+.+
T Consensus       282 ~~l~~~~~~~~~fDlVilDPP~f~~-~k~----~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~-~~~~~f~~~v~~  355 (396)
T PRK15128        282 KLLRTYRDRGEKFDVIVMDPPKFVE-NKS----QLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL-MTSDLFQKIIAD  355 (396)
T ss_pred             HHHHHHHhcCCCCCEEEECCCCCCC-ChH----HHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc-CCHHHHHHHHHH
Confidence            4321111124679999999997542 222    1222222255667789999999999998888764 232    33444


Q ss_pred             HHhhCC--cEEEEEeeCCCCCCC
Q 016441          167 LAIGSS--LSLIWCSEFKIEDYP  187 (389)
Q Consensus       167 LAa~aG--L~L~~~~~F~~~~YP  187 (389)
                      .|.++|  +.+++. .-++.|+|
T Consensus       356 aa~~~~~~~~~l~~-~~~~~DhP  377 (396)
T PRK15128        356 AAIDAGRDVQFIEQ-FRQAADHP  377 (396)
T ss_pred             HHHHcCCeEEEEEE-cCCCCCCC
Confidence            566665  444443 34666676

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=96.09  E-value=0.1  Score=54.68  Aligned_cols=144  Identities=17%  Similarity=0.134  Sum_probs=88.8

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+..+||=+|=|.=.++.+|++... ..+++|+-.+  ++..+   .+++|++.+. ..+.++. -|..+..  . ...
T Consensus       249 l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS--~~ALe---~AreNa~~~g-~rV~fi~-gDl~e~~--l-~~~  317 (423)
T PRK14966        249 LPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDIS--PPALE---TARKNAADLG-ARVEFAH-GSWFDTD--M-PSE  317 (423)
T ss_pred             cCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHHcC-CcEEEEE-cchhccc--c-ccC
Confidence            44566899999999889999987753 4466665443  33333   3677876542 1233332 3443321  1 123


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHH-----------HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIE-----------MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI  169 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir-----------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa  169 (389)
                      .+||.||.|=|......++.....++           .-.+.++.++..+..+|+++|.+.+.+-..   ..-.++++.+
T Consensus       318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~---Q~e~V~~ll~  394 (423)
T PRK14966        318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD---QGAAVRGVLA  394 (423)
T ss_pred             CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc---HHHHHHHHHH
Confidence            47999999999987421111111111           112346788999999999999987766332   2337888888


Q ss_pred             hCCcEEEEE
Q 016441          170 GSSLSLIWC  178 (389)
Q Consensus       170 ~aGL~L~~~  178 (389)
                      +.|+..++.
T Consensus       395 ~~Gf~~v~v  403 (423)
T PRK14966        395 ENGFSGVET  403 (423)
T ss_pred             HCCCcEEEE
Confidence            889876554

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=95.98  E-value=0.05  Score=50.79  Aligned_cols=119  Identities=15%  Similarity=0.154  Sum_probs=84.1

Q ss_pred             cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC---
Q 016441           19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH---   95 (389)
Q Consensus        19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~---   95 (389)
                      ..+.++++||=+|=|.=+|+..|++..+....|+|.-++..    .            ...++.++.+ |++.+...   
T Consensus        47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~------------~~~~v~~i~~-D~~~~~~~~~i  109 (209)
T PRK11188         47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----D------------PIVGVDFLQG-DFRDELVLKAL  109 (209)
T ss_pred             ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----c------------CCCCcEEEec-CCCChHHHHHH
Confidence            45677889999999999999999988765557888777551    0            1146777766 88875311   


Q ss_pred             -CCcCCCCcceEEEcC-CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441           96 -PDLRTRKFDRIIFNF-PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP  158 (389)
Q Consensus        96 -~~Lk~~~FDrIIFNF-PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  158 (389)
                       ..+....||.|+-|. ||..+  ...  ..+..+-.++...++.|..+|++||.+.|.+..+..
T Consensus       110 ~~~~~~~~~D~V~S~~~~~~~g--~~~--~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~  170 (209)
T PRK11188        110 LERVGDSKVQVVMSDMAPNMSG--TPA--VDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG  170 (209)
T ss_pred             HHHhCCCCCCEEecCCCCccCC--ChH--HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence             012357899999998 88853  211  112223345678999999999999999998888764

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=95.91  E-value=0.18  Score=40.87  Aligned_cols=105  Identities=16%  Similarity=0.191  Sum_probs=67.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCC-CCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATT-MELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATk-L~~~~~Lk~  100 (389)
                      ..+.+||=+|-|.=.++..|++..+ +..+++.-+.  +...+   .++.|++.+.-..+.++ .-|+.. +...    .
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~~-~~~~~~~~~~~----~   86 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERN--PEALR---LIERNARRFGVSNIVIV-EGDAPEALEDS----L   86 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCC--HHHHH---HHHHHHHHhCCCceEEE-eccccccChhh----c
Confidence            3467999999999999999998764 3456555443  33332   25666666543334333 244443 2111    2


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      .+||.|+...+.      .           .+..+++.+.++|+++|.+.++.-
T Consensus        87 ~~~D~v~~~~~~------~-----------~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        87 PEPDRVFIGGSG------G-----------LLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             CCCCEEEECCcc------h-----------hHHHHHHHHHHHcCCCCEEEEEec
Confidence            479999985421      0           134889999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=95.85  E-value=0.16  Score=46.94  Aligned_cols=127  Identities=17%  Similarity=0.148  Sum_probs=79.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ++.+||-||-|.=+++..|++. +  .+++++-.+  ....+   .+..++.... ..+.+ ...|+..+...   ....
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~iD~s--~~~~~---~a~~~~~~~~-~~~~~-~~~~~~~~~~~---~~~~  114 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL-G--ADVTGIDAS--EENIE---VARLHALESG-LKIDY-RQTTAEELAAE---HPGQ  114 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEcCC--HHHHH---HHHHHHHHcC-CceEE-EecCHHHhhhh---cCCC
Confidence            5678999999988888888774 2  456666443  22222   2444443221 12333 34555554321   2368


Q ss_pred             cceEEEcC--CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC----------------------
Q 016441          103 FDRIIFNF--PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP----------------------  158 (389)
Q Consensus       103 FDrIIFNF--PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P----------------------  158 (389)
                      ||.|+.++  .|.+.                ...+++++..+|+++|.+.|+.....+                      
T Consensus       115 fD~Ii~~~~l~~~~~----------------~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (233)
T PRK05134        115 FDVVTCMEMLEHVPD----------------PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTH  178 (233)
T ss_pred             ccEEEEhhHhhccCC----------------HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccC
Confidence            99999864  34331                235789999999999999988543211                      


Q ss_pred             -----CCcccHHHHHhhCCcEEEEE
Q 016441          159 -----FSNWNIKELAIGSSLSLIWC  178 (389)
Q Consensus       159 -----Y~sWnIe~LAa~aGL~L~~~  178 (389)
                           ++..++.++.+++||.++..
T Consensus       179 ~~~~~~~~~~~~~~l~~~Gf~~v~~  203 (233)
T PRK05134        179 DYKKFIKPSELAAWLRQAGLEVQDI  203 (233)
T ss_pred             chhhcCCHHHHHHHHHHCCCeEeee
Confidence                 12345788899999988865

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=95.83  E-value=0.23  Score=45.00  Aligned_cols=107  Identities=18%  Similarity=0.329  Sum_probs=65.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ...+||-||-|.=.++..+++..+....++++-.+  +.+.+   .+++++..............|+.++.    +....
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s--~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~  121 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFS--EGMLA---VGREKLRDLGLSGNVEFVQGDAEALP----FPDNS  121 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCC--HHHHH---HHHHhhcccccccCeEEEecccccCC----CCCCC
Confidence            46799999999999999999876422445554443  33332   24444432111122233446887754    23467


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      ||.|+.++=..   ...+           +..+++++..+|+++|.|.+.
T Consensus       122 ~D~I~~~~~l~---~~~~-----------~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        122 FDAVTIAFGLR---NVPD-----------IDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             ccEEEEecccc---cCCC-----------HHHHHHHHHHhccCCcEEEEE
Confidence            99998764211   1111           346788999999999988663

>PRK04457 spermidine synthase; Provisional

Probab=95.77  E-value=0.022  Score=55.06  Aligned_cols=116  Identities=15%  Similarity=0.116  Sum_probs=74.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-KLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ...+||.||=|.-++++.|++.++ ...|++--.|.  ++.+   -|+++...-. ...++|+.+ ||.+.-..   ...
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp--~vi~---~A~~~f~~~~~~~rv~v~~~-Da~~~l~~---~~~  135 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINP--QVIA---VARNHFELPENGERFEVIEA-DGAEYIAV---HRH  135 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCH--HHHH---HHHHHcCCCCCCCceEEEEC-CHHHHHHh---CCC
Confidence            456899999999999999998763 45676666653  3332   1334432211 134667665 77653211   125


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP  158 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  158 (389)
                      +||.|+.|.-+...  ..        .......||+.|..+|+++|.+.|.+....+
T Consensus       136 ~yD~I~~D~~~~~~--~~--------~~l~t~efl~~~~~~L~pgGvlvin~~~~~~  182 (262)
T PRK04457        136 STDVILVDGFDGEG--II--------DALCTQPFFDDCRNALSSDGIFVVNLWSRDK  182 (262)
T ss_pred             CCCEEEEeCCCCCC--Cc--------cccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence            79999998543221  10        0111469999999999999999998765443

>PRK08317 hypothetical protein; Provisional

Probab=95.77  E-value=0.34  Score=43.50  Aligned_cols=110  Identities=21%  Similarity=0.184  Sum_probs=70.2

Q ss_pred             cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEe-ccccCCCCCCCC
Q 016441           19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILH-GVDATTMELHPD   97 (389)
Q Consensus        19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vlf-gVDATkL~~~~~   97 (389)
                      ....++.+||-+|-|.=.++..+++.+++..+++++..+.. .+ +   .+..+   ....+..+-+ ..|++.+.    
T Consensus        15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~-~~-~---~a~~~---~~~~~~~~~~~~~d~~~~~----   82 (241)
T PRK08317         15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA-ML-A---LAKER---AAGLGPNVEFVRGDADGLP----   82 (241)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH-HH-H---HHHHH---hhCCCCceEEEecccccCC----
Confidence            34567889999999999999999988755567887777532 11 1   12222   1122333333 33666543    


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      +....||.|+.+.-..-.   .+           ...+++.+..+|+++|.|.+.-.
T Consensus        83 ~~~~~~D~v~~~~~~~~~---~~-----------~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         83 FPDGSFDAVRSDRVLQHL---ED-----------PARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             CCCCCceEEEEechhhcc---CC-----------HHHHHHHHHHHhcCCcEEEEEec
Confidence            345789999987432211   11           24678889999999999987653

>TIGR00417 speE spermidine synthase

Probab=95.70  E-value=0.063  Score=51.77  Aligned_cols=109  Identities=17%  Similarity=0.173  Sum_probs=69.1

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH----HhCCCEEEeccccCCCCCCCCcC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL----KKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L----r~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ..+||.+|-|+-+++..+++.. +..++++...|..  +.+   .+++++..+    ....+++.. -|+.+.-..   .
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~--vi~---~a~~~~~~~~~~~~~~~v~i~~-~D~~~~l~~---~  142 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEK--VIE---LSKKFLPSLAGSYDDPRVDLQI-DDGFKFLAD---T  142 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHH--HHH---HHHHHhHhhcccccCCceEEEE-CchHHHHHh---C
Confidence            4599999999999999998754 3457888877743  221   133343333    223355544 455332111   1


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      ..+||.||.+.|..-.  ..        ..-....||+.++.+|+++|.+.+.
T Consensus       143 ~~~yDvIi~D~~~~~~--~~--------~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       143 ENTFDVIIVDSTDPVG--PA--------ETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCccEEEEeCCCCCC--cc--------cchhHHHHHHHHHHHhCCCcEEEEc
Confidence            3689999999875421  10        1122479999999999999998876

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=95.64  E-value=0.53  Score=45.25  Aligned_cols=109  Identities=18%  Similarity=0.182  Sum_probs=69.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC---CCEEEeccccCCCCCCCCc
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL---GTCILHGVDATTMELHPDL   98 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~---Gv~VlfgVDATkL~~~~~L   98 (389)
                      .+..+||=||=|.=.++..|++..+...+|+|  .|-.+++.+.   |+++.......   ++. +..-|+.+|.    +
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~g--vD~S~~ml~~---A~~r~~~~~~~~~~~i~-~~~~d~~~lp----~  141 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMG--LDFSSEQLAV---AASRQELKAKSCYKNIE-WIEGDATDLP----F  141 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEE--EECCHHHHHH---HHHHhhhhhhccCCCeE-EEEcccccCC----C
Confidence            45789999999988899999887654345655  4533444432   33332211111   233 3345777653    4


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      ....||.|+.+|=.--.   +|           ...+++.+..+|+|||.+.++-.
T Consensus       142 ~~~sfD~V~~~~~l~~~---~d-----------~~~~l~ei~rvLkpGG~l~i~d~  183 (261)
T PLN02233        142 DDCYFDAITMGYGLRNV---VD-----------RLKAMQEMYRVLKPGSRVSILDF  183 (261)
T ss_pred             CCCCEeEEEEecccccC---CC-----------HHHHHHHHHHHcCcCcEEEEEEC
Confidence            55789999988643221   11           34788999999999999887643

>PLN02244 tocopherol O-methyltransferase

Probab=95.59  E-value=0.46  Score=47.48  Aligned_cols=138  Identities=22%  Similarity=0.250  Sum_probs=85.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EEE-eccccCCCCCCCCc
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT--CIL-HGVDATTMELHPDL   98 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv--~Vl-fgVDATkL~~~~~L   98 (389)
                      .+..+||=||=|.=.++..|++.++  .++++.-++ .+.+ +   .+..+.+   +.|.  .|- ..-|+..+.    +
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s-~~~i-~---~a~~~~~---~~g~~~~v~~~~~D~~~~~----~  182 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLS-PVQA-A---RANALAA---AQGLSDKVSFQVADALNQP----F  182 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECC-HHHH-H---HHHHHHH---hcCCCCceEEEEcCcccCC----C
Confidence            4677999999999999999998873  467665443 2222 2   1333332   2232  222 334777653    3


Q ss_pred             CCCCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec-C--CCC----C----------
Q 016441           99 RTRKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK-T--TVP----F----------  159 (389)
Q Consensus        99 k~~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk-~--g~P----Y----------  159 (389)
                      ....||.|+.++-  |..     |           ...+|+.+..+|+|||.+.|+-. .  ..|    .          
T Consensus       183 ~~~~FD~V~s~~~~~h~~-----d-----------~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~  246 (340)
T PLN02244        183 EDGQFDLVWSMESGEHMP-----D-----------KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDK  246 (340)
T ss_pred             CCCCccEEEECCchhccC-----C-----------HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHH
Confidence            4578999997643  432     1           23788899999999999988532 1  111    0          


Q ss_pred             -------Ccc----cHHHHHhhCCcEEEEEeeCCCCCCCCC
Q 016441          160 -------SNW----NIKELAIGSSLSLIWCSEFKIEDYPAY  189 (389)
Q Consensus       160 -------~sW----nIe~LAa~aGL~L~~~~~F~~~~YPGY  189 (389)
                             ..|    +++++++++||..++...+....-|-|
T Consensus       247 i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~  287 (340)
T PLN02244        247 ICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFW  287 (340)
T ss_pred             HHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHH
Confidence                   112    455678899999888776554433433

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=95.58  E-value=0.094  Score=54.33  Aligned_cols=133  Identities=15%  Similarity=0.218  Sum_probs=90.5

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF  103 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F  103 (389)
                      ...+|=||=|+=-|++.||+.+ ...+++|.-.+..  +.+   .+..++....-.++.++ ..||..+-..  +....+
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~--~i~---~a~~ka~~~gL~NV~~i-~~DA~~ll~~--~~~~s~  193 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTP--SIE---QVLKQIELLNLKNLLII-NYDARLLLEL--LPSNSV  193 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHH--HHH---HHHHHHHHcCCCcEEEE-ECCHHHhhhh--CCCCce
Confidence            4579999999999999999887 3568888766532  222   13334333221234544 5788776433  456889


Q ss_pred             ceEEEcCCCCCCCCCccchHHHHHh-HHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEE
Q 016441          104 DRIIFNFPHAGFYGKEDNHLLIEMH-RSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSL  175 (389)
Q Consensus       104 DrIIFNFPH~G~~gkED~~r~Ir~n-r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L  175 (389)
                      |+|+.|||-.-.+.         .| |.....|+..+..+|++||.|++....- +|-.|-++.+.+...+.+
T Consensus       194 D~I~lnFPdPW~Kk---------rHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~-~y~~~~~e~~~~~~~~~~  256 (390)
T PRK14121        194 EKIFVHFPVPWDKK---------PHRRVISEDFLNEALRVLKPGGTLELRTDSE-LYFEFSLELFLKLPKAKI  256 (390)
T ss_pred             eEEEEeCCCCcccc---------chhhccHHHHHHHHHHHcCCCcEEEEEEECH-HHHHHHHHHHHhCCCcee
Confidence            99999998543211         22 3346789999999999999999987665 488888888766655544

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.57  E-value=0.25  Score=48.95  Aligned_cols=135  Identities=19%  Similarity=0.200  Sum_probs=82.0

Q ss_pred             CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCCCCc
Q 016441           25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRTRKF  103 (389)
Q Consensus        25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~~~F  103 (389)
                      .+||=+|-|.=.++.+|++.+. ...++|+  |-..+..+   .|+.|++.+.-. .+.++. -|+.+     .+...+|
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p-~~~V~av--Dis~~al~---~A~~n~~~~~l~~~i~~~~-~D~~~-----~l~~~~f  202 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFP-DAEVDAV--DISPDALA---VAEINIERHGLEDRVTLIE-SDLFA-----ALPGRRY  202 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCC-CCEEEEE--eCCHHHHH---HHHHHHHHhCCCCcEEEEE-Cchhh-----hCCCCCc
Confidence            5899999999999999998763 3456555  53233332   367777655321 144443 35432     1223579


Q ss_pred             ceEEEcCCCCCCCCCccchHHHH-----------HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCC
Q 016441          104 DRIIFNFPHAGFYGKEDNHLLIE-----------MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSS  172 (389)
Q Consensus       104 DrIIFNFPH~G~~gkED~~r~Ir-----------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aG  172 (389)
                      |.||.|=|-++..........++           .--++...+++.|..+|++||.+.+.+-..+   . .+.++....+
T Consensus       203 DlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~---~-~~~~~~~~~~  278 (307)
T PRK11805        203 DLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR---V-HLEEAYPDVP  278 (307)
T ss_pred             cEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH---H-HHHHHHhhCC
Confidence            99999988877421111011111           0125678899999999999999998765432   1 2555555555


Q ss_pred             cEE
Q 016441          173 LSL  175 (389)
Q Consensus       173 L~L  175 (389)
                      +..
T Consensus       279 ~~~  281 (307)
T PRK11805        279 FTW  281 (307)
T ss_pred             CEE
Confidence            544

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=95.53  E-value=0.016  Score=53.85  Aligned_cols=150  Identities=19%  Similarity=0.279  Sum_probs=95.6

Q ss_pred             hccccccCCCCCCe-EEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCC
Q 016441           13 KEEKWIKHYSSNHQ-ILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATT   91 (389)
Q Consensus        13 ~~~K~~~~Yss~~r-ILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATk   91 (389)
                      ....|-..|..... +|=||=|+=-|..++|+.+ ...|+++--..  .....+   +...++...-.++.++. .||..
T Consensus         6 ~~~~~~~~f~~~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~--~~~v~~---a~~~~~~~~l~Nv~~~~-~da~~   78 (195)
T PF02390_consen    6 EPLDWQEIFGNDNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIR--KKRVAK---ALRKAEKRGLKNVRFLR-GDARE   78 (195)
T ss_dssp             CTTCHHHHHTSCCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES---HHHHHH---HHHHHHHHTTSSEEEEE-S-CTT
T ss_pred             CccCHHHHcCCCCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecc--hHHHHH---HHHHHHhhcccceEEEE-ccHHH
Confidence            44567777777764 7778888888888998887 46788886443  222222   34444444434556654 48888


Q ss_pred             CCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh-h
Q 016441           92 MELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI-G  170 (389)
Q Consensus        92 L~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa-~  170 (389)
                      +-.. .+....+|.|..|||-.=.+-+.      .++|-+=..|+.....+|++||+|++..... +|-.|-++.+.+ .
T Consensus        79 ~l~~-~~~~~~v~~i~i~FPDPWpK~rH------~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~-~y~~~~~~~~~~~~  150 (195)
T PF02390_consen   79 LLRR-LFPPGSVDRIYINFPDPWPKKRH------HKRRLVNPEFLELLARVLKPGGELYFATDVE-EYAEWMLEQFEESH  150 (195)
T ss_dssp             HHHH-HSTTTSEEEEEEES-----SGGG------GGGSTTSHHHHHHHHHHEEEEEEEEEEES-H-HHHHHHHHHHHHHS
T ss_pred             HHhh-cccCCchheEEEeCCCCCcccch------hhhhcCCchHHHHHHHHcCCCCEEEEEeCCH-HHHHHHHHHHHhcC
Confidence            3222 13457899999999998653221      1334445688888999999999998776544 599999999999 5


Q ss_pred             CCcEEEE
Q 016441          171 SSLSLIW  177 (389)
Q Consensus       171 aGL~L~~  177 (389)
                      .++....
T Consensus       151 ~~f~~~~  157 (195)
T PF02390_consen  151 PGFENIE  157 (195)
T ss_dssp             TTEEEE-
T ss_pred             cCeEEcc
Confidence            7888774

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.52  E-value=0.14  Score=54.28  Aligned_cols=140  Identities=16%  Similarity=0.159  Sum_probs=85.9

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCCCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ..+||=+|=|.=.++.+|++.+. ...++|+-.+ .+.+ +   -|+.|++...-. .+.+ ...|+..     .+...+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis-~~al-~---~A~~N~~~~~l~~~v~~-~~~D~~~-----~~~~~~  206 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP-NANVIATDIS-LDAI-E---VAKSNAIKYEVTDRIQI-IHSNWFE-----NIEKQK  206 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECC-HHHH-H---HHHHHHHHcCCccceee-eecchhh-----hCcCCC
Confidence            46899999999899999988763 3466665443 3333 2   366776543211 1332 3334322     122457


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHH------------hHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhh
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEM------------HRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIG  170 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~  170 (389)
                      ||.||.|=|.+...-.......+..            =.+.++.++..|..+|+++|.+.+.+-..   ....|.++.++
T Consensus       207 fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~---q~~~v~~~~~~  283 (506)
T PRK01544        207 FDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK---QEEAVTQIFLD  283 (506)
T ss_pred             ccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc---hHHHHHHHHHh
Confidence            9999999999874111110111111            12456778899999999999998875433   34567778888


Q ss_pred             CCcEEEEE
Q 016441          171 SSLSLIWC  178 (389)
Q Consensus       171 aGL~L~~~  178 (389)
                      .|+..+..
T Consensus       284 ~g~~~~~~  291 (506)
T PRK01544        284 HGYNIESV  291 (506)
T ss_pred             cCCCceEE
Confidence            88865544

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=95.49  E-value=0.22  Score=44.86  Aligned_cols=128  Identities=20%  Similarity=0.220  Sum_probs=81.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=+++..+++... ...++  +.|...+..+   .+++|++.+.-..++++.+ |+..     .+ ..
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~--~vD~s~~~~~---~a~~n~~~~~~~~i~~~~~-d~~~-----~~-~~   96 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFP-SLQVT--AIERNPDALR---LIKENRQRFGCGNIDIIPG-EAPI-----EL-PG   96 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCC-CCEEE--EEECCHHHHH---HHHHHHHHhCCCCeEEEec-Cchh-----hc-Cc
Confidence            4677999999999999999998752 33444  4554333333   3667776654334666543 4421     12 24


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      .||.|+.+...    +             .+..++..+..+|+++|.+.+....-.  +.=++.++.++.|+...+....
T Consensus        97 ~~D~v~~~~~~----~-------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~--~~~~~~~~l~~~g~~~~~~~~~  157 (187)
T PRK08287         97 KADAIFIGGSG----G-------------NLTAIIDWSLAHLHPGGRLVLTFILLE--NLHSALAHLEKCGVSELDCVQL  157 (187)
T ss_pred             CCCEEEECCCc----c-------------CHHHHHHHHHHhcCCCeEEEEEEecHh--hHHHHHHHHHHCCCCcceEEEE
Confidence            79999987431    0             134678889999999999987543211  1125666888888876665443

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=95.45  E-value=0.091  Score=45.54  Aligned_cols=111  Identities=25%  Similarity=0.285  Sum_probs=75.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      +++.+||=+|=|.=-++..|++..+++.+  .+..|-.+++.++   |+.+++.+.-..+ -.+-.|++++...  +. .
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~--i~gvD~s~~~i~~---a~~~~~~~~~~ni-~~~~~d~~~l~~~--~~-~   72 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAK--IIGVDISEEMIEY---AKKRAKELGLDNI-EFIQGDIEDLPQE--LE-E   72 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSE--EEEEESSHHHHHH---HHHHHHHTTSTTE-EEEESBTTCGCGC--SS-T
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCE--EEEEECcHHHHHH---hhccccccccccc-ceEEeehhccccc--cC-C
Confidence            46789999999999999999976554455  5566755566553   4555444433323 3444788886654  33 7


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      .||.|+.+.+---.   .+           ...+++.+..+|+++|.+.++...
T Consensus        73 ~~D~I~~~~~l~~~---~~-----------~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   73 KFDIIISNGVLHHF---PD-----------PEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TEEEEEEESTGGGT---SH-----------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CeeEEEEcCchhhc---cC-----------HHHHHHHHHHHcCCCcEEEEEECC
Confidence            89999999654211   11           236688999999999999988776

...

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=95.44  E-value=0.37  Score=43.21  Aligned_cols=104  Identities=17%  Similarity=0.316  Sum_probs=66.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=+|-|.=.++..+++..+....+++.-.+  +++.+   .+.+++.  ....+.++ ..|+.++.    +....
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~--~~~~~---~~~~~~~--~~~~i~~~-~~d~~~~~----~~~~~  106 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS--SEMLE---VAKKKSE--LPLNIEFI-QADAEALP----FEDNS  106 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECC--HHHHH---HHHHHhc--cCCCceEE-ecchhcCC----CCCCc
Confidence            57799999999999999999886422345554443  33322   2334443  11234443 47777654    23467


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      ||.|+.++--...   .+           ...+++++..+|+++|.+.+.
T Consensus       107 ~D~i~~~~~~~~~---~~-----------~~~~l~~~~~~L~~gG~l~~~  142 (223)
T TIGR01934       107 FDAVTIAFGLRNV---TD-----------IQKALREMYRVLKPGGRLVIL  142 (223)
T ss_pred             EEEEEEeeeeCCc---cc-----------HHHHHHHHHHHcCCCcEEEEE
Confidence            9999987642211   11           346899999999999988764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.41  E-value=0.25  Score=45.69  Aligned_cols=104  Identities=16%  Similarity=0.151  Sum_probs=68.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++++||=+|=|.=.++..|++..+....++|.-.+  +++.+   .|++|++.+.-.+++++. .|+.....    ...
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~--~~~~~---~A~~~~~~~g~~~v~~~~-~d~~~~~~----~~~  145 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERI--PELAE---KAERRLRKLGLDNVIVIV-GDGTQGWE----PLA  145 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHCCCCCeEEEE-CCcccCCc----ccC
Confidence            567899999999999999999886543346655444  44443   367777765433466554 36654321    125


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      .||+|+.+.+-...                    .......|+++|.+.+.+.+
T Consensus       146 ~fD~Ii~~~~~~~~--------------------~~~~~~~L~~gG~lv~~~~~  179 (215)
T TIGR00080       146 PYDRIYVTAAGPKI--------------------PEALIDQLKEGGILVMPVGE  179 (215)
T ss_pred             CCCEEEEcCCcccc--------------------cHHHHHhcCcCcEEEEEEcC
Confidence            89999998653221                    12245679999999987654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK04266 fibrillarin; Provisional

Probab=95.31  E-value=0.52  Score=44.96  Aligned_cols=136  Identities=12%  Similarity=0.113  Sum_probs=82.2

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ...++.+||=+|=|.=.++..|++..+ ...|+|  +|..+++.+.   ..++.+.  ..++.++. -|++.......+.
T Consensus        69 ~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~a--vD~~~~ml~~---l~~~a~~--~~nv~~i~-~D~~~~~~~~~l~  139 (226)
T PRK04266         69 PIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYA--VEFAPRPMRE---LLEVAEE--RKNIIPIL-ADARKPERYAHVV  139 (226)
T ss_pred             CCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEE--EECCHHHHHH---HHHHhhh--cCCcEEEE-CCCCCcchhhhcc
Confidence            345778999999998889999998775 234544  4655544432   2222222  13555543 3666432112233


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC------CCCCcc--cHHHHHhhC
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT------VPFSNW--NIKELAIGS  171 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g------~PY~sW--nIe~LAa~a  171 (389)
                       ..||.|+-+.+..      +          -...+++.+..+|+|||.+.|++.-.      .| ..|  +..+..+.+
T Consensus       140 -~~~D~i~~d~~~p------~----------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~-~~~~~~~~~~l~~a  201 (226)
T PRK04266        140 -EKVDVIYQDVAQP------N----------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP-KEIFKEEIRKLEEG  201 (226)
T ss_pred             -ccCCEEEECCCCh------h----------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH-HHHHHHHHHHHHHc
Confidence             4599998554421      0          01346778889999999999985532      11 111  133677788


Q ss_pred             CcEEEEEeeCC
Q 016441          172 SLSLIWCSEFK  182 (389)
Q Consensus       172 GL~L~~~~~F~  182 (389)
                      ||..++...+.
T Consensus       202 GF~~i~~~~l~  212 (226)
T PRK04266        202 GFEILEVVDLE  212 (226)
T ss_pred             CCeEEEEEcCC
Confidence            99999887653

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=95.20  E-value=0.35  Score=44.16  Aligned_cols=133  Identities=18%  Similarity=0.261  Sum_probs=82.3

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-KLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ..++.+||-+|=|.=++|..+++..+....|+|.  |...+..+   .+++|++.+. ...+.+. .-|+.++-..  + 
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~av--D~~~~~~~---~a~~n~~~~g~~~~v~~~-~~d~~~~l~~--~-  108 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAV--DKDEKAIN---LTRRNAEKFGVLNNIVLI-KGEAPEILFT--I-  108 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEE--ECCHHHHH---HHHHHHHHhCCCCCeEEE-EechhhhHhh--c-
Confidence            4467799999999999999998876544455554  54333433   3677877665 3345554 3466542111  1 


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      ...||+|+-+.   +   .++           +..+++.+..+|+++|.|.+...+-.  +.=.+....++.|+......
T Consensus       109 ~~~~D~V~~~~---~---~~~-----------~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~~~g~~~~~~~  169 (198)
T PRK00377        109 NEKFDRIFIGG---G---SEK-----------LKEIISASWEIIKKGGRIVIDAILLE--TVNNALSALENIGFNLEITE  169 (198)
T ss_pred             CCCCCEEEECC---C---ccc-----------HHHHHHHHHHHcCCCcEEEEEeecHH--HHHHHHHHHHHcCCCeEEEE
Confidence            25799999864   1   111           35688899999999999987554321  11134445567887544333


Q ss_pred             eC
Q 016441          180 EF  181 (389)
Q Consensus       180 ~F  181 (389)
                      .+
T Consensus       170 ~~  171 (198)
T PRK00377        170 VI  171 (198)
T ss_pred             Ee
Confidence            33

>PRK00811 spermidine synthase; Provisional

Probab=95.19  E-value=0.19  Score=49.15  Aligned_cols=109  Identities=17%  Similarity=0.268  Sum_probs=70.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-----HhCCCEEEeccccCCCCCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-----KKLGTCILHGVDATTMELHPD   97 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-----r~~Gv~VlfgVDATkL~~~~~   97 (389)
                      ...+||.+|=|+-+.+..++++. ...+|++--+|.  ++.+.   +++++..+     +...++|+ --||.+.-..  
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~--~vv~~---a~~~~~~~~~~~~~d~rv~v~-~~Da~~~l~~--  146 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDE--RVVEV---CRKYLPEIAGGAYDDPRVELV-IGDGIKFVAE--  146 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCH--HHHHH---HHHHhHHhccccccCCceEEE-ECchHHHHhh--
Confidence            45789999999999999998753 345677777774  33322   44455443     23345554 4466553221  


Q ss_pred             cCCCCcceEEEcCCC-CCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           98 LRTRKFDRIIFNFPH-AGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH-~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                       ...+||.||-+.+. .+. .          ..-.-..||+.|+++|+++|.+.+.
T Consensus       147 -~~~~yDvIi~D~~dp~~~-~----------~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        147 -TENSFDVIIVDSTDPVGP-A----------EGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             -CCCcccEEEECCCCCCCc-h----------hhhhHHHHHHHHHHhcCCCcEEEEe
Confidence             24689999999643 231 1          1113478999999999999977653

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.14  E-value=0.34  Score=45.91  Aligned_cols=106  Identities=19%  Similarity=0.220  Sum_probs=67.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--E-EEeccccCCCCCCCCc
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT--C-ILHGVDATTMELHPDL   98 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv--~-VlfgVDATkL~~~~~L   98 (389)
                      ....+||=||=|.=.+|..|++.   +.++++.  |..+++.+.   |+++++.   .|.  . -+...|+..+..   .
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~v--D~s~~~l~~---a~~~~~~---~g~~~~v~~~~~d~~~l~~---~  108 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILC--DLSAEMIQR---AKQAAEA---KGVSDNMQFIHCAAQDIAQ---H  108 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEE--ECCHHHHHH---HHHHHHh---cCCccceEEEEcCHHHHhh---h
Confidence            45679999999999999999975   3466654  644444442   4444433   332  1 233456666532   2


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      ....||.|+++...--.   ++           ...++..+..+|+|||.+.|+..+
T Consensus       109 ~~~~fD~V~~~~vl~~~---~~-----------~~~~l~~~~~~LkpgG~l~i~~~n  151 (255)
T PRK11036        109 LETPVDLILFHAVLEWV---AD-----------PKSVLQTLWSVLRPGGALSLMFYN  151 (255)
T ss_pred             cCCCCCEEEehhHHHhh---CC-----------HHHHHHHHHHHcCCCeEEEEEEEC
Confidence            24679999987552211   11           125788899999999999887543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=95.04  E-value=1.5  Score=40.26  Aligned_cols=107  Identities=17%  Similarity=0.099  Sum_probs=64.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=+|-|.=.+|..||+.   +.+|+|  .|...++.++   ++.++..-.-.++.+ ...|+..+.    + ..
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~---g~~V~g--vD~S~~~i~~---a~~~~~~~~~~~v~~-~~~d~~~~~----~-~~   94 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAAN---GFDVTA--WDKNPMSIAN---LERIKAAENLDNLHT-AVVDLNNLT----F-DG   94 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHC---CCEEEE--EeCCHHHHHH---HHHHHHHcCCCcceE-EecChhhCC----c-CC
Confidence            45679999999999999999975   235544  4654444432   333333211112222 224554432    2 24


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeE-EEEec
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEV-HVSHK  154 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeI-HVTLk  154 (389)
                      .||.|+.++...-            .+...+..+++.+..+|+++|.+ .++..
T Consensus        95 ~fD~I~~~~~~~~------------~~~~~~~~~l~~i~~~LkpgG~~~~~~~~  136 (197)
T PRK11207         95 EYDFILSTVVLMF------------LEAKTIPGLIANMQRCTKPGGYNLIVAAM  136 (197)
T ss_pred             CcCEEEEecchhh------------CCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence            6999998876321            12334678999999999999984 44443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=94.84  E-value=0.47  Score=46.07  Aligned_cols=137  Identities=18%  Similarity=0.148  Sum_probs=82.9

Q ss_pred             CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCCcCCCCc
Q 016441           25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPDLRTRKF  103 (389)
Q Consensus        25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~Lk~~~F  103 (389)
                      .+||=+|=|.=.++.+|+..+. ...++|+-.+  .+..+   -|+.|++.+.-.+ +.++. -|+.+     .+...+|
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis--~~al~---~a~~n~~~~~~~~~v~~~~-~d~~~-----~~~~~~f  183 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDIS--PDALA---VAEENAEKNQLEHRVEFIQ-SNLFE-----PLAGQKI  183 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEEEE-Cchhc-----cCcCCCc
Confidence            5899999999999999998763 3466665443  33332   3667776554322 44333 35432     1223479


Q ss_pred             ceEEEcCCCCCCCCCccchHHHHH------------hHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh-h
Q 016441          104 DRIIFNFPHAGFYGKEDNHLLIEM------------HRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI-G  170 (389)
Q Consensus       104 DrIIFNFPH~G~~gkED~~r~Ir~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa-~  170 (389)
                      |.||.|=|-+...-.... ..+..            ...+++.++..|..+|+++|.+.+.+-..+.   =.+.++.. .
T Consensus       184 DlIvsNPPyi~~~~~~~~-~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~---~~~~~~~~~~  259 (284)
T TIGR00536       184 DIIVSNPPYIDEEDLADL-PNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ---KSLKELLRIK  259 (284)
T ss_pred             cEEEECCCCCCcchhhcC-CcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH---HHHHHHHHhc
Confidence            999999988864211100 01111            2347889999999999999999887754321   13444444 3


Q ss_pred             CCcEEEE
Q 016441          171 SSLSLIW  177 (389)
Q Consensus       171 aGL~L~~  177 (389)
                      .|+.-++
T Consensus       260 ~~~~~~~  266 (284)
T TIGR00536       260 FTWYDVE  266 (284)
T ss_pred             CCCceeE
Confidence            5664333

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=94.78  E-value=0.62  Score=44.87  Aligned_cols=105  Identities=15%  Similarity=0.225  Sum_probs=66.2

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..++.+||=||-|.=..+..|++.+  +..+++.-.. .+ +.+   .+.++...  ...+.+ ...|++++.    +..
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s-~~-~~~---~a~~~~~~--~~~i~~-~~~D~~~~~----~~~  115 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDIC-EK-MVN---IAKLRNSD--KNKIEF-EANDILKKD----FPE  115 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECC-HH-HHH---HHHHHcCc--CCceEE-EECCcccCC----CCC
Confidence            4677899999998877788888765  3466665543 22 222   13333221  112333 345776532    345


Q ss_pred             CCcceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          101 RKFDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       101 ~~FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      ..||.|+.+  +-|.+.   ++           ...+|+.+..+|+|||.+.|+-
T Consensus       116 ~~FD~V~s~~~l~h~~~---~d-----------~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        116 NTFDMIYSRDAILHLSY---AD-----------KKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             CCeEEEEEhhhHHhCCH---HH-----------HHHHHHHHHHHcCCCcEEEEEE
Confidence            789999985  356542   11           3478899999999999999874

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=94.78  E-value=0.61  Score=47.43  Aligned_cols=138  Identities=17%  Similarity=0.060  Sum_probs=85.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ....+||=||-|.=.+++.|++.++ +.+++++-. |.+ +.++   ++++..   ..++.+ ..-|+..+.    +...
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~-S~~-mL~~---A~~k~~---~~~i~~-i~gD~e~lp----~~~~  177 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQ-SPH-QLAK---AKQKEP---LKECKI-IEGDAEDLP----FPTD  177 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEEC-CHH-HHHH---HHHhhh---ccCCeE-EeccHHhCC----CCCC
Confidence            4567999999999888999988764 346666444 233 3221   333322   234554 334555543    3456


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC--------------CCCcccHHHH
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV--------------PFSNWNIKEL  167 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~--------------PY~sWnIe~L  167 (389)
                      .||.||-+....-.   .|           ....|+.+..+|+++|.+.|+-....              ....-.+.++
T Consensus       178 sFDvVIs~~~L~~~---~d-----------~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~l  243 (340)
T PLN02490        178 YADRYVSAGSIEYW---PD-----------PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEW  243 (340)
T ss_pred             ceeEEEEcChhhhC---CC-----------HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHH
Confidence            79999987543211   11           11468999999999999877521110              0122345578


Q ss_pred             HhhCCcEEEEEeeCCCCCCC
Q 016441          168 AIGSSLSLIWCSEFKIEDYP  187 (389)
Q Consensus       168 Aa~aGL~L~~~~~F~~~~YP  187 (389)
                      .+++||..++..+..+..|+
T Consensus       244 L~~aGF~~V~i~~i~~~~~~  263 (340)
T PLN02490        244 FTKAGFKDVKLKRIGPKWYR  263 (340)
T ss_pred             HHHCCCeEEEEEEcChhhcc
Confidence            88999999998887765554

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=94.37  E-value=0.8  Score=41.71  Aligned_cols=103  Identities=21%  Similarity=0.162  Sum_probs=62.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEe-ccccCCCCCCCCcCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT-CILH-GVDATTMELHPDLRT  100 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv-~Vlf-gVDATkL~~~~~Lk~  100 (389)
                      ...+||=+|-|.=+++..+++..   ..++++-.+. + +.+   .+..++.   ..+. .+-+ ..|+.++...   ..
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~-~-~~~---~a~~~~~---~~~~~~~~~~~~d~~~~~~~---~~  110 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASE-E-NIE---VAKLHAK---KDPLLKIEYRCTSVEDLAEK---GA  110 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCH-H-HHH---HHHHHHH---HcCCCceEEEeCCHHHhhcC---CC
Confidence            47799999999888888887742   2466655532 2 221   1233332   3333 2322 3455444321   13


Q ss_pred             CCcceEEEcC--CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441          101 RKFDRIIFNF--PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus       101 ~~FDrIIFNF--PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      ..||.|+.++  -|+..                ...+++++..+|+++|.|.++..+
T Consensus       111 ~~~D~i~~~~~l~~~~~----------------~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       111 KSFDVVTCMEVLEHVPD----------------PQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             CCccEEEehhHHHhCCC----------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence            6899999864  23321                347889999999999999987643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=94.31  E-value=0.53  Score=48.32  Aligned_cols=122  Identities=20%  Similarity=0.250  Sum_probs=87.3

Q ss_pred             EEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceEEE
Q 016441           29 LVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIF  108 (389)
Q Consensus        29 LVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrIIF  108 (389)
                      .+|=|.|=--++|.     +.+++.+  |=.+.+.+   .++.|+++..-.+..|+-.-||++|.    |....||-|+-
T Consensus       205 FcGTGgiLiEagl~-----G~~viG~--Did~~mv~---gak~Nl~~y~i~~~~~~~~~Da~~lp----l~~~~vdaIat  270 (347)
T COG1041         205 FCGTGGILIEAGLM-----GARVIGS--DIDERMVR---GAKINLEYYGIEDYPVLKVLDATNLP----LRDNSVDAIAT  270 (347)
T ss_pred             cCCccHHHHhhhhc-----CceEeec--chHHHHHh---hhhhhhhhhCcCceeEEEecccccCC----CCCCccceEEe
Confidence            46666665444442     5678888  53444444   38999999886677777666999987    56668999999


Q ss_pred             cCCCCCCCCCccchHHHHH--hHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEE
Q 016441          109 NFPHAGFYGKEDNHLLIEM--HRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWC  178 (389)
Q Consensus       109 NFPH~G~~gkED~~r~Ir~--nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~  178 (389)
                      +=|=--. .+      ++.  --+|+.+||.+++++|+++|.+.+...       -+..+-+.+.|+.++..
T Consensus       271 DPPYGrs-t~------~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-------~~~~~~~~~~~f~v~~~  328 (347)
T COG1041         271 DPPYGRS-TK------IKGEGLDELYEEALESASEVLKPGGRIVFAAP-------RDPRHELEELGFKVLGR  328 (347)
T ss_pred             cCCCCcc-cc------cccccHHHHHHHHHHHHHHHhhcCcEEEEecC-------CcchhhHhhcCceEEEE
Confidence            9885322 11      112  347999999999999999999888766       23345677888888876

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=94.31  E-value=0.44  Score=48.01  Aligned_cols=133  Identities=23%  Similarity=0.262  Sum_probs=88.9

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLD-SYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD-SeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ..+||=||=|.==-+..||+..+   ..-.|-.| +...+.    .|+.|+..=.=.+..|.++-.....      .. +
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p---~~~vtmvDvn~~Av~----~ar~Nl~~N~~~~~~v~~s~~~~~v------~~-k  224 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSP---QAKLTLVDVNARAVE----SARKNLAANGVENTEVWASNLYEPV------EG-K  224 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCC---CCeEEEEecCHHHHH----HHHHhHHHcCCCccEEEEecccccc------cc-c
Confidence            34788888888888888888753   33344444 333332    2566665432223345555444443      23 8


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCC-----cc-cHHHHHhhCCcEEE
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFS-----NW-NIKELAIGSSLSLI  176 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~-----sW-nIe~LAa~aGL~L~  176 (389)
                      ||.||-|=|---+  +       ..-..+...+|+.|.+.|++||++.|--....||.     .. +++.+|+..||++.
T Consensus       225 fd~IisNPPfh~G--~-------~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg~v~~la~~~gf~Vl  295 (300)
T COG2813         225 FDLIISNPPFHAG--K-------AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVLAKNGGFKVL  295 (300)
T ss_pred             ccEEEeCCCccCC--c-------chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcCCEEEEEeCCCEEEE
Confidence            9999999996543  2       13445778999999999999999999988666653     12 57778888888887


Q ss_pred             EEe
Q 016441          177 WCS  179 (389)
Q Consensus       177 ~~~  179 (389)
                      +..
T Consensus       296 ~a~  298 (300)
T COG2813         296 RAK  298 (300)
T ss_pred             EEe
Confidence            764

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=94.27  E-value=0.25  Score=47.51  Aligned_cols=140  Identities=20%  Similarity=0.298  Sum_probs=99.8

Q ss_pred             ccccccCCCCCC--eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EE-Eecccc
Q 016441           14 EEKWIKHYSSNH--QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT-CI-LHGVDA   89 (389)
Q Consensus        14 ~~K~~~~Yss~~--rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv-~V-lfgVDA   89 (389)
                      ..+|-.-|....  -+|=||=|.=-|-..+|+.. ...|.++--.-.        +....-++.+++.|+ .| +...||
T Consensus        37 ~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~--------~~v~~~l~k~~~~~l~Nlri~~~DA  107 (227)
T COG0220          37 PGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRV--------PGVAKALKKIKELGLKNLRLLCGDA  107 (227)
T ss_pred             cchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEeh--------HHHHHHHHHHHHcCCCcEEEEcCCH
Confidence            456777777774  58889999999999999987 456888754332        122345666777777 43 478899


Q ss_pred             CCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh
Q 016441           90 TTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI  169 (389)
Q Consensus        90 TkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa  169 (389)
                      +.+-.+. ...+..|+|..|||-.=.|-+.      +++|-+=..|++-...+|++||.||+....- .|-.|.+.+...
T Consensus       108 ~~~l~~~-~~~~sl~~I~i~FPDPWpKkRH------~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~-~y~e~~~~~~~~  179 (227)
T COG0220         108 VEVLDYL-IPDGSLDKIYINFPDPWPKKRH------HKRRLTQPEFLKLYARKLKPGGVLHFATDNE-EYFEWMMLEVLE  179 (227)
T ss_pred             HHHHHhc-CCCCCeeEEEEECCCCCCCccc------cccccCCHHHHHHHHHHccCCCEEEEEecCH-HHHHHHHHHHHh
Confidence            9987664 3445899999999988653321      1344455688888999999999999887554 488885555444


Q ss_pred             h
Q 016441          170 G  170 (389)
Q Consensus       170 ~  170 (389)
                      .
T Consensus       180 ~  180 (227)
T COG0220         180 H  180 (227)
T ss_pred             c
Confidence            3

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=94.08  E-value=0.51  Score=46.32  Aligned_cols=149  Identities=21%  Similarity=0.202  Sum_probs=103.4

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHH--HHhCCCEEEeccccCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDN--LKKLGTCILHGVDATTME   93 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~--Lr~~Gv~VlfgVDATkL~   93 (389)
                      .|+..-. ..+||=+|=|+===++.||+... ...|++--++.+  +   |.-|..|++.  |+++ +.| +.-|.+.+.
T Consensus        38 ~~~~~~~-~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~--~---a~~A~~nv~ln~l~~r-i~v-~~~Di~~~~  108 (248)
T COG4123          38 AFAPVPK-KGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEE--A---AEMAQRNVALNPLEER-IQV-IEADIKEFL  108 (248)
T ss_pred             hhccccc-CCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHH--H---HHHHHHHHHhCcchhc-eeE-ehhhHHHhh
Confidence            5555555 88999999999988888888753 367888777743  2   2347888876  4432 343 456888877


Q ss_pred             CCCCcCCCCcceEEEcCCCCCCCCC--ccchHHHHHhHH--HHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh
Q 016441           94 LHPDLRTRKFDRIIFNFPHAGFYGK--EDNHLLIEMHRS--LVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI  169 (389)
Q Consensus        94 ~~~~Lk~~~FDrIIFNFPH~G~~gk--ED~~r~Ir~nr~--LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa  169 (389)
                      ++...  .+||.||.|=|+--....  ++..+-+-.|..  .+.++.+.|+++|+++|.+.+-|...   ..=.|.++++
T Consensus       109 ~~~~~--~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---rl~ei~~~l~  183 (248)
T COG4123         109 KALVF--ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---RLAEIIELLK  183 (248)
T ss_pred             hcccc--cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---HHHHHHHHHH
Confidence            66533  479999999999874222  222233333322  37899999999999999999888633   3446778888


Q ss_pred             hCCcEEEEE
Q 016441          170 GSSLSLIWC  178 (389)
Q Consensus       170 ~aGL~L~~~  178 (389)
                      ..+|...+.
T Consensus       184 ~~~~~~k~i  192 (248)
T COG4123         184 SYNLEPKRI  192 (248)
T ss_pred             hcCCCceEE
Confidence            777665553

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=94.07  E-value=0.78  Score=46.57  Aligned_cols=104  Identities=26%  Similarity=0.300  Sum_probs=70.0

Q ss_pred             HHHHHHhCCCE--EEeccccCCCCCCCCcCCCCcceEEEcCCCCCCCCCc----c-----chHHHHHhHHHHHHHHHhhH
Q 016441           72 NLDNLKKLGTC--ILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKE----D-----NHLLIEMHRSLVRDFFRNSS  140 (389)
Q Consensus        72 Ni~~Lr~~Gv~--VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkE----D-----~~r~Ir~nr~LL~~FF~SA~  140 (389)
                      -.+.|+++|+.  ++...|+.++..... ...+||+|+-+=|+.|. |.=    |     ....|.....|=...+.+|.
T Consensus       198 l~~nl~RlG~~nv~~~~~d~~~~~~~~~-~~~~fD~iLlDaPCSg~-G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~  275 (355)
T COG0144         198 LRENLKRLGVRNVIVVNKDARRLAELLP-GGEKFDRILLDAPCSGT-GVIRRDPDVKWRRTPEDIAELAKLQKEILAAAL  275 (355)
T ss_pred             HHHHHHHcCCCceEEEeccccccccccc-ccCcCcEEEECCCCCCC-cccccCccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            33445566655  677788877654331 22379999999999994 321    1     33456666677788899999


Q ss_pred             hcccCCCeEEEEecCCCCCCcccHH-H-HHhhCCcEEEE
Q 016441          141 GMLRDGGEVHVSHKTTVPFSNWNIK-E-LAIGSSLSLIW  177 (389)
Q Consensus       141 ~lL~~~GeIHVTLk~g~PY~sWnIe-~-LAa~aGL~L~~  177 (389)
                      ++|++||.+..+.|+-.|-..=.++ . |.+..++.+..
T Consensus       276 ~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~  314 (355)
T COG0144         276 KLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEP  314 (355)
T ss_pred             HhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeec
Confidence            9999999999999987764333333 3 33334555554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=93.87  E-value=0.29  Score=51.82  Aligned_cols=135  Identities=13%  Similarity=0.106  Sum_probs=93.6

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC---CEEEeccccCCCCCCCCcCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG---TCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G---v~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..-+|=||=|+=.|...+|+.+ +..|+++--....        ....-+...++.|   +.++.+ |+..+...  +..
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~--------~~~~~~~~~~~~~l~N~~~~~~-~~~~~~~~--~~~  415 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLN--------GVANVLKLAGEQNITNFLLFPN-NLDLILND--LPN  415 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHH--------HHHHHHHHHHHcCCCeEEEEcC-CHHHHHHh--cCc
Confidence            4457889999999999999987 4678888755421        1222233334443   455443 77766544  456


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIW  177 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~  177 (389)
                      ..+|+|..|||-.=.|-+.      +++|-+=..|+.....+|++||+|++..... +|-.|-++.+.+..++.+..
T Consensus       416 ~sv~~i~i~FPDPWpKkrh------~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~-~y~~~~~~~~~~~~~f~~~~  485 (506)
T PRK01544        416 NSLDGIYILFPDPWIKNKQ------KKKRIFNKERLKILQDKLKDNGNLVFASDIE-NYFYEAIELIQQNGNFEIIN  485 (506)
T ss_pred             ccccEEEEECCCCCCCCCC------ccccccCHHHHHHHHHhcCCCCEEEEEcCCH-HHHHHHHHHHHhCCCeEecc
Confidence            7799999999998764332      2344445678888899999999999776544 59999888887777787653

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=93.79  E-value=1  Score=41.63  Aligned_cols=106  Identities=20%  Similarity=0.198  Sum_probs=66.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ..+++||=||=|.=.++..|++..+....+  ++.|..+++.+   .+++|++.+.-.+..-+..-|+.+.-.    ...
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V--~~iD~~~~~~~---~a~~~l~~~~~~~~v~~~~~d~~~~~~----~~~  141 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKV--YTVEIVKELAI---YAAQNIERLGYWGVVEVYHGDGKRGLE----KHA  141 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEE--EEEeCCHHHHH---HHHHHHHHcCCCCcEEEEECCcccCCc----cCC
Confidence            456899999999999999999877533344  45554455543   366677654322212234456655321    236


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      .||+|+.+..-.-          +          -......|++||.+.+...++
T Consensus       142 ~fD~Ii~~~~~~~----------~----------~~~l~~~L~~gG~lvi~~~~~  176 (205)
T PRK13944        142 PFDAIIVTAAAST----------I----------PSALVRQLKDGGVLVIPVEEG  176 (205)
T ss_pred             CccEEEEccCcch----------h----------hHHHHHhcCcCcEEEEEEcCC
Confidence            8999999865211          1          113446799999999987544

>PLN02366 spermidine synthase

Probab=93.70  E-value=0.34  Score=48.45  Aligned_cols=112  Identities=21%  Similarity=0.279  Sum_probs=71.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhh-hhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKY-KRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY-~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ....+||.||=|+-+.+..|+++ .....|++--+|.. -++.++| +..  +. .+++..++|+.+ ||.+.-+.  ..
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~--~~-~~~dpRv~vi~~-Da~~~l~~--~~  162 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDL--AV-GFDDPRVNLHIG-DGVEFLKN--AP  162 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhh--cc-ccCCCceEEEEC-hHHHHHhh--cc
Confidence            34678999999999999999876 33456777777743 2333433 221  11 244556776654 55432111  12


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEE
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVH  150 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIH  150 (389)
                      .++||.||-+.+...+  .        ...-.-..||+.++.+|+++|.+.
T Consensus       163 ~~~yDvIi~D~~dp~~--~--------~~~L~t~ef~~~~~~~L~pgGvlv  203 (308)
T PLN02366        163 EGTYDAIIVDSSDPVG--P--------AQELFEKPFFESVARALRPGGVVC  203 (308)
T ss_pred             CCCCCEEEEcCCCCCC--c--------hhhhhHHHHHHHHHHhcCCCcEEE
Confidence            4679999998765422  1        112234689999999999999873

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=93.66  E-value=2.1  Score=41.58  Aligned_cols=106  Identities=15%  Similarity=0.182  Sum_probs=67.2

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCc
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDL   98 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~L   98 (389)
                      .+++.++||=||=|.=.++.++++++.   ++.+|.+|..+ +.+   .+++|+++..-. .++++ .-|+-+..    +
T Consensus       146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p---~~~~~~~D~~~-~~~---~a~~~~~~~gl~~rv~~~-~~d~~~~~----~  213 (306)
T TIGR02716       146 KLDGVKKMIDVGGGIGDISAAMLKHFP---ELDSTILNLPG-AID---LVNENAAEKGVADRMRGI-AVDIYKES----Y  213 (306)
T ss_pred             CCCCCCEEEEeCCchhHHHHHHHHHCC---CCEEEEEecHH-HHH---HHHHHHHhCCccceEEEE-ecCccCCC----C
Confidence            367788999999999999999999873   35567778643 333   255565543211 13333 33654421    2


Q ss_pred             CCCCcceEEE-cCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           99 RTRKFDRIIF-NFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        99 k~~~FDrIIF-NFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                        ..+|.|++ +.-|.-             +.+.....|+.+.+.|+|||.+.|.
T Consensus       214 --~~~D~v~~~~~lh~~-------------~~~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       214 --PEADAVLFCRILYSA-------------NEQLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             --CCCCEEEeEhhhhcC-------------ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence              23688764 434432             1123456788899999999999887

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PTZ00146 fibrillarin; Provisional

Probab=93.26  E-value=4  Score=41.03  Aligned_cols=134  Identities=15%  Similarity=0.117  Sum_probs=82.7

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEeccccCCCCCCCCc
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-KKLGTCILHGVDATTMELHPDL   98 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-r~~Gv~VlfgVDATkL~~~~~L   98 (389)
                      +..+.++||=+|=|.=+|+..|++..+..-.|+|--+.  +.+.+..      ++.. +..++..+.+ |++.......+
T Consensus       129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s--~r~~~dL------l~~ak~r~NI~~I~~-Da~~p~~y~~~  199 (293)
T PTZ00146        129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS--HRSGRDL------TNMAKKRPNIVPIIE-DARYPQKYRML  199 (293)
T ss_pred             ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc--HHHHHHH------HHHhhhcCCCEEEEC-CccChhhhhcc
Confidence            45678899999999999999999987644467775433  2222111      1111 1245655543 77643211111


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC-----CC----CCcccHHHHHh
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT-----VP----FSNWNIKELAI  169 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g-----~P----Y~sWnIe~LAa  169 (389)
                       ...||+|+-+...      .|+.          .-+..+|..+|+++|.+.|..+..     .|    +. +.+ +..+
T Consensus       200 -~~~vDvV~~Dva~------pdq~----------~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~-~ev-~~L~  260 (293)
T PTZ00146        200 -VPMVDVIFADVAQ------PDQA----------RIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFA-SEV-QKLK  260 (293)
T ss_pred             -cCCCCEEEEeCCC------cchH----------HHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHH-HHH-HHHH
Confidence             1369999998852      1221          123344888999999999976532     22    23 455 5568


Q ss_pred             hCCcEEEEEeeC
Q 016441          170 GSSLSLIWCSEF  181 (389)
Q Consensus       170 ~aGL~L~~~~~F  181 (389)
                      ++||..++.+..
T Consensus       261 ~~GF~~~e~v~L  272 (293)
T PTZ00146        261 KEGLKPKEQLTL  272 (293)
T ss_pred             HcCCceEEEEec
Confidence            889998888765

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=93.26  E-value=0.76  Score=43.54  Aligned_cols=109  Identities=15%  Similarity=0.171  Sum_probs=68.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+.+||-||=|.=..+..|++.+. ..+...|..|...++.+.   |+.+++..... .+.+ +.-|+..+.    +  
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~-~~~~~v~gvD~S~~ml~~---A~~~~~~~~~~~~v~~-~~~d~~~~~----~--  123 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIH-HDNCKIIAIDNSPAMIER---CRRHIDAYKAPTPVDV-IEGDIRDIA----I--  123 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcC-CCCCeEEEEeCCHHHHHH---HHHHHHhcCCCCCeEE-EeCChhhCC----C--
Confidence            3567899998887777777877542 123456677855555543   56666543222 2444 455666542    1  


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      ..+|.|+.|+..--.            +..-...+++.+..+|+|||.+.++-
T Consensus       124 ~~~D~vv~~~~l~~l------------~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        124 ENASMVVLNFTLQFL------------EPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             CCCCEEehhhHHHhC------------CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            348999988753211            01113478888999999999998874

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=93.03  E-value=0.72  Score=47.20  Aligned_cols=100  Identities=20%  Similarity=0.272  Sum_probs=66.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++++||=||=|.=.++..+++.++  ..|++..+. .+.+.    .++++++.   .++.+. -.|+..+       ..
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS-~~~l~----~A~~~~~~---l~v~~~-~~D~~~l-------~~  227 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTIS-AEQQK----LAQERCAG---LPVEIR-LQDYRDL-------NG  227 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCC-HHHHH----HHHHHhcc---CeEEEE-ECchhhc-------CC
Confidence            5678999999999999999998764  467776554 22221    24444432   233333 2355443       25


Q ss_pred             CcceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          102 KFDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       102 ~FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      .||.|+-+  |-|+|.   +        +   +..||+.+..+|+|+|.+.+..
T Consensus       228 ~fD~Ivs~~~~ehvg~---~--------~---~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        228 QFDRIVSVGMFEHVGP---K--------N---YRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             CCCEEEEeCchhhCCh---H--------H---HHHHHHHHHHHcCCCcEEEEEE
Confidence            79999865  567763   1        1   4478999999999999998864

>PRK06922 hypothetical protein; Provisional

Probab=92.90  E-value=0.74  Score=50.97  Aligned_cols=118  Identities=19%  Similarity=0.309  Sum_probs=74.7

Q ss_pred             ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC
Q 016441           18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD   97 (389)
Q Consensus        18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~   97 (389)
                      +..+.++.+||=||=|.=.++..|++.+. ..+++  ..|-...+.+.   ++.++... ...+.++.+ |+.++...  
T Consensus       413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVt--GIDIS~~MLe~---Ararl~~~-g~~ie~I~g-Da~dLp~~--  482 (677)
T PRK06922        413 ILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIY--GIDISENVIDT---LKKKKQNE-GRSWNVIKG-DAINLSSS--  482 (677)
T ss_pred             HhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEE--EEECCHHHHHH---HHHHhhhc-CCCeEEEEc-chHhCccc--
Confidence            45666788999999988888888988763 34555  55644444432   44443221 123444444 77776432  


Q ss_pred             cCCCCcceEEEcCCC------CCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           98 LRTRKFDRIIFNFPH------AGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH------~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      +....||.|++|++-      +...+.       ..+.+-+..+++++..+|+|||.+.|.
T Consensus       483 fedeSFDvVVsn~vLH~L~syIp~~g~-------~f~~edl~kiLreI~RVLKPGGrLII~  536 (677)
T PRK06922        483 FEKESVDTIVYSSILHELFSYIEYEGK-------KFNHEVIKKGLQSAYEVLKPGGRIIIR  536 (677)
T ss_pred             cCCCCEEEEEEchHHHhhhhhcccccc-------cccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            345689999999642      211111       123345778999999999999999986

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=92.73  E-value=2  Score=40.36  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=66.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||-|.=.++..|++.++ +.++++.-..  +++.+.   +..++     .++.+ ...|+..+.     ...
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s--~~~i~~---a~~~~-----~~~~~-~~~d~~~~~-----~~~   92 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSS--PAMLAE---ARSRL-----PDCQF-VEADIASWQ-----PPQ   92 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECC--HHHHHH---HHHhC-----CCCeE-EECchhccC-----CCC
Confidence            5678999999999999999998763 4467666443  333332   33332     12333 344666542     235


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      .||.|+.|+..--.   .|           ...+|+.+..+|++||.+.++..+
T Consensus        93 ~fD~v~~~~~l~~~---~d-----------~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683         93 ALDLIFANASLQWL---PD-----------HLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             CccEEEEccChhhC---CC-----------HHHHHHHHHHhcCCCcEEEEECCC
Confidence            89999999763221   12           135788888999999999998643

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=92.69  E-value=0.25  Score=46.69  Aligned_cols=102  Identities=26%  Similarity=0.335  Sum_probs=58.7

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ...++++||-+-=|==.||+.+|+. +.+..|+|--.....--     -.+.|++.=+-.+....+.-||.++-.     
T Consensus        98 ~v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~-----~L~~Ni~lNkv~~~i~~~~~D~~~~~~-----  166 (200)
T PF02475_consen   98 LVKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVE-----YLKENIRLNKVENRIEVINGDAREFLP-----  166 (200)
T ss_dssp             C--TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHH-----HHHHHHHHTT-TTTEEEEES-GGG--------
T ss_pred             cCCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHH-----HHHHHHHHcCCCCeEEEEcCCHHHhcC-----
Confidence            4566778776544444455556664 34567998877733211     123344333333555677889998764     


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEE
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVH  150 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIH  150 (389)
                      ...|||||.|.|+...                  .|+..|..+++++|-||
T Consensus       167 ~~~~drvim~lp~~~~------------------~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  167 EGKFDRVIMNLPESSL------------------EFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             TT-EEEEEE--TSSGG------------------GGHHHHHHHEEEEEEEE
T ss_pred             ccccCEEEECChHHHH------------------HHHHHHHHHhcCCcEEE
Confidence            4789999999999863                  68888999999999888

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00740 methyltransferase, putative

Probab=92.65  E-value=1.5  Score=40.93  Aligned_cols=108  Identities=14%  Similarity=0.190  Sum_probs=68.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      .+..+||=||=|.=.++..|++.+.. .+.-.|.+|-.+++.+   .|+.+++.... ..++++ .-|+.++.    +  
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~-p~~~v~gvD~s~~ml~---~a~~~~~~~~~~~~v~~~-~~d~~~~~----~--  120 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQ-PNVKIIGIDNSQPMVE---RCRQHIAAYHSEIPVEIL-CNDIRHVE----I--  120 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCC-CCCeEEEEeCCHHHHH---HHHHHHHhcCCCCCeEEE-ECChhhCC----C--
Confidence            46678999999999999999987531 2344555664444443   25556544321 124444 34777653    2  


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      ..+|.|+.++.-.-.   .+         .-...+++.+..+|++||.+.++
T Consensus       121 ~~~d~v~~~~~l~~~---~~---------~~~~~~l~~i~~~LkpgG~l~i~  160 (239)
T TIGR00740       121 KNASMVILNFTLQFL---PP---------EDRIALLTKIYEGLNPNGVLVLS  160 (239)
T ss_pred             CCCCEEeeecchhhC---CH---------HHHHHHHHHHHHhcCCCeEEEEe
Confidence            348999888752111   00         01236888899999999999987

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PHA03411 putative methyltransferase; Provisional

Probab=92.56  E-value=1.8  Score=43.20  Aligned_cols=135  Identities=16%  Similarity=0.187  Sum_probs=82.7

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF  103 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F  103 (389)
                      ..+||=+|=|.=-|+..+++..+ +.+|++.-.+.  .+.+.   ++.|+     .++.+ ..-|+..+.     ...+|
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp--~al~~---Ar~n~-----~~v~~-v~~D~~e~~-----~~~kF  127 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNP--EFARI---GKRLL-----PEAEW-ITSDVFEFE-----SNEKF  127 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCH--HHHHH---HHHhC-----cCCEE-EECchhhhc-----ccCCC
Confidence            45898776666666666766542 35677765553  33321   33332     14554 344665542     23679


Q ss_pred             ceEEEcCCCCCCCCCccchHHHHHh------HHH-HHHHHHhhHhcccCCCeEEEEecCCCCC-----CcccHHHHHhhC
Q 016441          104 DRIIFNFPHAGFYGKEDNHLLIEMH------RSL-VRDFFRNSSGMLRDGGEVHVSHKTTVPF-----SNWNIKELAIGS  171 (389)
Q Consensus       104 DrIIFNFPH~G~~gkED~~r~Ir~n------r~L-L~~FF~SA~~lL~~~GeIHVTLk~g~PY-----~sWnIe~LAa~a  171 (389)
                      |.||.|-|..-. ..+++....+..      ..| +..|++....+|+++|.+. ..-.+.|+     +.=...++-+++
T Consensus       128 DlIIsNPPF~~l-~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~-~~yss~~~y~~sl~~~~y~~~l~~~  205 (279)
T PHA03411        128 DVVISNPPFGKI-NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG-FAYSGRPYYDGTMKSNKYLKWSKQT  205 (279)
T ss_pred             cEEEEcCCcccc-CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE-EEEeccccccccCCHHHHHHHHHhc
Confidence            999999998864 334433333321      334 7899999999999999444 44677774     223445577888


Q ss_pred             CcEEEE
Q 016441          172 SLSLIW  177 (389)
Q Consensus       172 GL~L~~  177 (389)
                      ||++..
T Consensus       206 g~~~~~  211 (279)
T PHA03411        206 GLVTYA  211 (279)
T ss_pred             CcEecC
Confidence            987644

>TIGR00452 methyltransferase, putative

Probab=92.50  E-value=3.7  Score=41.30  Aligned_cols=130  Identities=15%  Similarity=0.135  Sum_probs=77.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ++++||=||=|+=-++..++.. + +..  .+.+|....+......++   ..+...+...+...|+..|..     ...
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~-g-~~~--v~GiDpS~~ml~q~~~~~---~~~~~~~~v~~~~~~ie~lp~-----~~~  188 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGH-G-AKS--LVGIDPTVLFLCQFEAVR---KLLDNDKRAILEPLGIEQLHE-----LYA  188 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHc-C-CCE--EEEEcCCHHHHHHHHHHH---HHhccCCCeEEEECCHHHCCC-----CCC
Confidence            3579999999998888888765 3 223  366775444443322111   111222222223356655542     136


Q ss_pred             cceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec--CCC------C---C----Ccc---
Q 016441          103 FDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK--TTV------P---F----SNW---  162 (389)
Q Consensus       103 FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk--~g~------P---Y----~sW---  162 (389)
                      ||.|+.+  +-|...                ...+++.+..+|++||++.|+..  ++.      |   |    +.|   
T Consensus       189 FD~V~s~gvL~H~~d----------------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flp  252 (314)
T TIGR00452       189 FDTVFSMGVLYHRKS----------------PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIP  252 (314)
T ss_pred             cCEEEEcchhhccCC----------------HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCC
Confidence            9999987  344431                34688999999999999998632  221      2   2    123   


Q ss_pred             ---cHHHHHhhCCcEEEEEee
Q 016441          163 ---NIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       163 ---nIe~LAa~aGL~L~~~~~  180 (389)
                         .++...+++||..++.+.
T Consensus       253 S~~~L~~~L~~aGF~~V~i~~  273 (314)
T TIGR00452       253 SVSALKNWLEKVGFENFRILD  273 (314)
T ss_pred             CHHHHHHHHHHCCCeEEEEEe
Confidence               234567788999887654

Known examples to date are restricted to the proteobacteria.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=92.18  E-value=1.5  Score=44.18  Aligned_cols=105  Identities=17%  Similarity=0.213  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      -.++++||-||-|.=.++..|++..+....|++.  |..+++.+   .|++|++.+.-..+.+..+ |+.+....    .
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgV--Dis~~~l~---~Ar~~l~~~g~~nV~~i~g-D~~~~~~~----~  147 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICE---IAKRNVRRLGIENVIFVCG-DGYYGVPE----F  147 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEE--ECCHHHHH---HHHHHHHHcCCCcEEEEeC-Chhhcccc----c
Confidence            3567899999999999999999876533346654  54444443   3666766554334555544 76554321    2


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      ..||.|+..+   |.   +    ++      .    ..+...|+++|.+.+....
T Consensus       148 ~~fD~Ii~~~---g~---~----~i------p----~~~~~~LkpgG~Lvv~~~~  182 (322)
T PRK13943        148 APYDVIFVTV---GV---D----EV------P----ETWFTQLKEGGRVIVPINL  182 (322)
T ss_pred             CCccEEEECC---ch---H----Hh------H----HHHHHhcCCCCEEEEEeCC
Confidence            4699999863   21   1    11      1    1134579999998886643

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=92.05  E-value=2.1  Score=44.10  Aligned_cols=103  Identities=20%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~Lk   99 (389)
                      ..+..+||=||=|.=..+..|++.++  ..+++.-.. .+.+.    .|..|..   ..+..|- ...|+..+.    +.
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS-~~~l~----~A~~~~~---~~~~~v~~~~~d~~~~~----~~  329 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLS-VNMIS----FALERAI---GRKCSVEFEVADCTKKT----YP  329 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECC-HHHHH----HHHHHhh---cCCCceEEEEcCcccCC----CC
Confidence            35678999999999889999998763  466666553 33332    2444543   2222333 245666542    33


Q ss_pred             CCCcceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          100 TRKFDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       100 ~~~FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      ...||.|+..  +-|+.-                ...+|+.+..+|+|||.+.|+-
T Consensus       330 ~~~fD~I~s~~~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        330 DNSFDVIYSRDTILHIQD----------------KPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             CCCEEEEEECCcccccCC----------------HHHHHHHHHHHcCCCeEEEEEE
Confidence            4689999986  555531                1367889999999999999874

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=92.00  E-value=0.39  Score=47.12  Aligned_cols=130  Identities=20%  Similarity=0.302  Sum_probs=66.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHH-HHHhCCCEE-EeccccCCCCCCCCcCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLD-NLKKLGTCI-LHGVDATTMELHPDLRT  100 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~-~Lr~~Gv~V-lfgVDATkL~~~~~Lk~  100 (389)
                      .+++||+|||+|+ .|+|+|-. +.+.+|+.=-.|  +.+.+       -|+ .-++.|..| .+--|..+--  +.--.
T Consensus        44 ~gk~il~lGDDDL-tSlA~al~-~~~~~I~VvDiD--eRll~-------fI~~~a~~~gl~i~~~~~DlR~~L--P~~~~  110 (243)
T PF01861_consen   44 EGKRILFLGDDDL-TSLALALT-GLPKRITVVDID--ERLLD-------FINRVAEEEGLPIEAVHYDLRDPL--PEELR  110 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S---HHHHH-------HHHHHHHHHT--EEEE---TTS-----TTTS
T ss_pred             cCCEEEEEcCCcH-HHHHHHhh-CCCCeEEEEEcC--HHHHH-------HHHHHHHHcCCceEEEEecccccC--CHHHh
Confidence            4678999999997 35555533 335676554444  33332       111 122334332 2333443311  10114


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCC-eEEEEecCCCC-CCcc-cHHHHHhhCCcEEEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGG-EVHVSHKTTVP-FSNW-NIKELAIGSSLSLIW  177 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~G-eIHVTLk~g~P-Y~sW-nIe~LAa~aGL~L~~  177 (389)
                      ++||.++.+=|-+-- |              +.-|+.-+...|+..| .+.+.+...++ ...| ++.+...+.||.+.+
T Consensus       111 ~~fD~f~TDPPyT~~-G--------------~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~d  175 (243)
T PF01861_consen  111 GKFDVFFTDPPYTPE-G--------------LKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITD  175 (243)
T ss_dssp             S-BSEEEE---SSHH-H--------------HHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEE
T ss_pred             cCCCEEEeCCCCCHH-H--------------HHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHH
Confidence            789999999998861 1              5578888999998655 66666666553 4667 788888899999998


Q ss_pred             Eee
Q 016441          178 CSE  180 (389)
Q Consensus       178 ~~~  180 (389)
                      ..|
T Consensus       176 ii~  178 (243)
T PF01861_consen  176 IIP  178 (243)
T ss_dssp             EEE
T ss_pred             HHh
Confidence            643

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=91.84  E-value=2.2  Score=39.09  Aligned_cols=100  Identities=22%  Similarity=0.279  Sum_probs=60.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||-|.=.++..|++..+   .+++  .|..+++.+   .+.+|++.+.-.++.+..+ |+.+.  ..  ...
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~~---~v~~--vd~~~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~--~~--~~~  143 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLVR---RVFS--VERIKTLQW---EAKRRLKQLGLHNVSVRHG-DGWKG--WP--AYA  143 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhC---EEEE--EeCCHHHHH---HHHHHHHHCCCCceEEEEC-CcccC--CC--cCC
Confidence            4678999999998777877776542   4544  454344443   3666666543223555444 44321  11  236


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      .||+|+.+.+...          +          .+....+|+++|.+.+...
T Consensus       144 ~fD~I~~~~~~~~----------~----------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        144 PFDRILVTAAAPE----------I----------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CcCEEEEccCchh----------h----------hHHHHHhcCCCcEEEEEEc
Confidence            7999999864211          1          1223568999999998876

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=91.74  E-value=0.28  Score=47.21  Aligned_cols=133  Identities=18%  Similarity=0.197  Sum_probs=81.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      +.++||++|=|+-+-+..|.++. +...|++--+|.. -++.++|=......  +++..++|++ -||.+.-+..  ..+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~-~Dg~~~l~~~--~~~  149 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIII-GDGRKFLKET--QEE  149 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEE-STHHHHHHTS--SST
T ss_pred             CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEE-hhhHHHHHhc--cCC
Confidence            57789999999999999998754 3467888888844 24555552211111  5566777754 4665432211  112


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC----CcccHHHHHhhCCc
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF----SNWNIKELAIGSSL  173 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY----~sWnIe~LAa~aGL  173 (389)
                      +||.||-+-+....  ..       .+ -.-..||+.|++.|+++|-+.+-.  +.|+    ..+.|.+.-+...-
T Consensus       150 ~yDvIi~D~~dp~~--~~-------~~-l~t~ef~~~~~~~L~~~Gv~v~~~--~~~~~~~~~~~~i~~tl~~~F~  213 (246)
T PF01564_consen  150 KYDVIIVDLTDPDG--PA-------PN-LFTREFYQLCKRRLKPDGVLVLQA--GSPFLHPELFKSILKTLRSVFP  213 (246)
T ss_dssp             -EEEEEEESSSTTS--CG-------GG-GSSHHHHHHHHHHEEEEEEEEEEE--EETTTTHHHHHHHHHHHHTTSS
T ss_pred             cccEEEEeCCCCCC--Cc-------cc-ccCHHHHHHHHhhcCCCcEEEEEc--cCcccchHHHHHHHHHHHHhCC
Confidence            89999998887322  11       12 345799999999999999988776  3333    33555554444444

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=91.66  E-value=2.4  Score=40.05  Aligned_cols=100  Identities=17%  Similarity=0.155  Sum_probs=65.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ....+||=||=|.=.++..|++.+. ...++  ..|..+.+.+.   |       ++.++.++. .|+..+.     ...
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~--gvD~s~~~~~~---a-------~~~~~~~~~-~d~~~~~-----~~~   88 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWP-GAVIE--ALDSSPEMVAA---A-------RERGVDART-GDVRDWK-----PKP   88 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEE--EEECCHHHHHH---H-------HhcCCcEEE-cChhhCC-----CCC
Confidence            4567999998888888889988762 34554  45543333332   2       234565543 5766542     235


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      .||.|+.|+..-=.   .|           ...+++.+..+|+|||.+.++.-
T Consensus        89 ~fD~v~~~~~l~~~---~d-----------~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         89 DTDVVVSNAALQWV---PE-----------HADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             CceEEEEehhhhhC---CC-----------HHHHHHHHHHhCCCCcEEEEEcC
Confidence            79999999864221   11           13567788899999999998853

>TIGR00477 tehB tellurite resistance protein TehB

Probab=91.62  E-value=2.1  Score=39.21  Aligned_cols=102  Identities=21%  Similarity=0.174  Sum_probs=62.2

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCcCCCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDLRTRK  102 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~Lk~~~  102 (389)
                      ..+||=+|-|.=.++..||+.   +..|+|.  |-.+++.++   +..+.   +..|+.|. ...|+...    .+. ..
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~---g~~V~~i--D~s~~~l~~---a~~~~---~~~~~~v~~~~~d~~~~----~~~-~~   94 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA---GYDVRAW--DHNPASIAS---VLDMK---ARENLPLRTDAYDINAA----ALN-ED   94 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC---CCeEEEE--ECCHHHHHH---HHHHH---HHhCCCceeEeccchhc----ccc-CC
Confidence            468999999999999999974   2456654  533444443   22222   23344322 12343322    122 46


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCe-EEEEe
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGE-VHVSH  153 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~Ge-IHVTL  153 (389)
                      ||.|+.+++..-.            +...+..+++++..+|++||. +.++.
T Consensus        95 fD~I~~~~~~~~~------------~~~~~~~~l~~~~~~LkpgG~lli~~~  134 (195)
T TIGR00477        95 YDFIFSTVVFMFL------------QAGRVPEIIANMQAHTRPGGYNLIVAA  134 (195)
T ss_pred             CCEEEEecccccC------------CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence            9999988663221            223456889999999999998 44443

Part of a tellurite-reducing operon tehA and tehB

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=91.28  E-value=0.82  Score=41.78  Aligned_cols=126  Identities=19%  Similarity=0.181  Sum_probs=74.6

Q ss_pred             EEecCChhHHHHHHHHhCCC------CcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           29 LVGEGDFSFSLCLALAFGSA------SNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        29 LVGEGDFSFSlSLa~~~gs~------~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      .+|-|.+--..++......+      ..+++.-.|  .+..+   .|..|++...-.+..-+...|+++|.    +....
T Consensus        36 ~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~--~~~v~---~a~~N~~~ag~~~~i~~~~~D~~~l~----~~~~~  106 (179)
T PF01170_consen   36 FCGSGTILIEAALMGANIPPLNDINELKIIGSDID--PKAVR---GARENLKAAGVEDYIDFIQWDARELP----LPDGS  106 (179)
T ss_dssp             T-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESS--HHHHH---HHHHHHHHTT-CGGEEEEE--GGGGG----GTTSB
T ss_pred             CCCCCHHHHHHHHHhhCcccccccccccEEecCCC--HHHHH---HHHHHHHhcccCCceEEEecchhhcc----cccCC
Confidence            58999888888876543210      124444444  33333   37788765543334455566999987    34568


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEE
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLI  176 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~  176 (389)
                      +|.||.|=|.--.-+.      -...++|...|++.++++|++ ..+.|+..+.      .+++.....+++..
T Consensus       107 ~d~IvtnPPyG~r~~~------~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~------~~~~~~~~~~~~~~  167 (179)
T PF01170_consen  107 VDAIVTNPPYGRRLGS------KKDLEKLYRQFLRELKRVLKP-RAVFLTTSNR------ELEKALGLKGWRKR  167 (179)
T ss_dssp             SCEEEEE--STTSHCH------HHHHHHHHHHHHHHHHCHSTT-CEEEEEESCC------CHHHHHTSTTSEEE
T ss_pred             CCEEEECcchhhhccC------HHHHHHHHHHHHHHHHHHCCC-CEEEEEECCH------HHHHHhcchhhceE
Confidence            9999999998432111      234589999999999999998 6666665433      34555555554433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=91.21  E-value=2.4  Score=42.44  Aligned_cols=137  Identities=22%  Similarity=0.301  Sum_probs=93.8

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      +-.++++||=||=|==+.+.=+|+++  +++||++++.. +++    ..+   -+.+++.|....-.|-   |....++.
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~-~Q~----~~~---~~r~~~~gl~~~v~v~---l~d~rd~~  135 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSE-EQL----AYA---EKRIAARGLEDNVEVR---LQDYRDFE  135 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCH-HHH----HHH---HHHHHHcCCCcccEEE---eccccccc
Confidence            56789999999999999999999998  57999999873 222    112   2346667766222222   22233333


Q ss_pred             CCCcceEEE--cCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC--CCC----------------
Q 016441          100 TRKFDRIIF--NFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT--VPF----------------  159 (389)
Q Consensus       100 ~~~FDrIIF--NFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g--~PY----------------  159 (389)
                       .+|||||-  -|=|+|.   +.           ...||+.+..+|+++|.+.+---++  +++                
T Consensus       136 -e~fDrIvSvgmfEhvg~---~~-----------~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~  200 (283)
T COG2230         136 -EPFDRIVSVGMFEHVGK---EN-----------YDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGE  200 (283)
T ss_pred             -cccceeeehhhHHHhCc---cc-----------HHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCc
Confidence             34999986  6788874   11           5699999999999999765322111  111                


Q ss_pred             --CcccHHHHHhhCCcEEEEEeeCCCC
Q 016441          160 --SNWNIKELAIGSSLSLIWCSEFKIE  184 (389)
Q Consensus       160 --~sWnIe~LAa~aGL~L~~~~~F~~~  184 (389)
                        ....|.+.+.++|+.+.+...|.+.
T Consensus       201 lPs~~~i~~~~~~~~~~v~~~~~~~~h  227 (283)
T COG2230         201 LPSISEILELASEAGFVVLDVESLRPH  227 (283)
T ss_pred             CCCHHHHHHHHHhcCcEEehHhhhcHH
Confidence              3467777889999999988887765

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=91.19  E-value=3.2  Score=41.85  Aligned_cols=130  Identities=18%  Similarity=0.219  Sum_probs=80.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-KLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+.+||=||=|+=-|+..|++.   +.++  |..|..+++.+.   |+.+.+... ..++.++. -|+.++..    ...
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V--~GID~s~~~i~~---Ar~~~~~~~~~~~i~~~~-~dae~l~~----~~~  197 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATV--TGVDAVDKNVKI---ARLHADMDPVTSTIEYLC-TTAEKLAD----EGR  197 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEE--EEEeCCHHHHHH---HHHHHHhcCcccceeEEe-cCHHHhhh----ccC
Confidence            4568999999998899999863   2344  556755555442   333322110 11344433 46666532    346


Q ss_pred             CcceEEEcC--CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC------------------CC--
Q 016441          102 KFDRIIFNF--PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV------------------PF--  159 (389)
Q Consensus       102 ~FDrIIFNF--PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------------------PY--  159 (389)
                      .||.|+...  -|+..                ...|++.+..+|+|||.+.|+--+..                  |.  
T Consensus       198 ~FD~Vi~~~vLeHv~d----------------~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gt  261 (322)
T PLN02396        198 KFDAVLSLEVIEHVAN----------------PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGT  261 (322)
T ss_pred             CCCEEEEhhHHHhcCC----------------HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCC
Confidence            899999765  34431                23789999999999999998853221                  11  


Q ss_pred             Ccc-------cHHHHHhhCCcEEEEEeeC
Q 016441          160 SNW-------NIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       160 ~sW-------nIe~LAa~aGL~L~~~~~F  181 (389)
                      ..|       .+..+.+++||.+.+..-+
T Consensus       262 h~~~~f~tp~eL~~lL~~aGf~i~~~~G~  290 (322)
T PLN02396        262 HQWSSFVTPEELSMILQRASVDVKEMAGF  290 (322)
T ss_pred             cCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence            123       3666777888888776433

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=91.12  E-value=0.3  Score=39.43  Aligned_cols=98  Identities=21%  Similarity=0.318  Sum_probs=58.8

Q ss_pred             EEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceE
Q 016441           27 ILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRI  106 (389)
Q Consensus        27 ILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrI  106 (389)
                      ||=+|=|.=.....|++.+..+.+...+..|-.+++.+.   ++++..+ ....++. +--|++++..    ...+||.|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~---~~~~~~~-~~~~~~~-~~~D~~~l~~----~~~~~D~v   71 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLEL---AKKRFSE-DGPKVRF-VQADARDLPF----SDGKFDLV   71 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHH---HHHHSHH-TTTTSEE-EESCTTCHHH----HSSSEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHH---HHHhchh-cCCceEE-EECCHhHCcc----cCCCeeEE
Confidence            566788888899999988722223555666733333332   4444443 2224443 6678877642    35699999


Q ss_pred             EEc---CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCC
Q 016441          107 IFN---FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGG  147 (389)
Q Consensus       107 IFN---FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~G  147 (389)
                      ++.   +.|.              .++-+..+|+++.++|+|+|
T Consensus        72 ~~~~~~~~~~--------------~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   72 VCSGLSLHHL--------------SPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EE-TTGGGGS--------------SHHHHHHHHHHHHHTEEEEE
T ss_pred             EEcCCccCCC--------------CHHHHHHHHHHHHHHhCCCC
Confidence            993   4453              33446789999999999887

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=91.10  E-value=3.4  Score=43.92  Aligned_cols=137  Identities=18%  Similarity=0.159  Sum_probs=87.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeccccCCCCCCCCcCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC--ILHGVDATTMELHPDLRT  100 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~--VlfgVDATkL~~~~~Lk~  100 (389)
                      ++++||=++=|==+=|..||...+....|+|.-.+.     ++.....+|++.   .|+.  ++..-|++++....   .
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~-----~R~~~L~~nl~r---~G~~nv~v~~~D~~~~~~~~---~  181 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSA-----SRVKVLHANISR---CGVSNVALTHFDGRVFGAAL---P  181 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCH-----HHHHHHHHHHHH---cCCCeEEEEeCchhhhhhhc---h
Confidence            455665555444444555666554334577655542     222234556655   4542  45567888876532   3


Q ss_pred             CCcceEEEcCCCCCCCCC--cc-------chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhh
Q 016441          101 RKFDRIIFNFPHAGFYGK--ED-------NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIG  170 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gk--ED-------~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~  170 (389)
                      ..||+|+-+=|+.|. |.  .+       ....+.....|=+..+.+|.++|++||.+.-+.|+=.|- |.-+|..+.++
T Consensus       182 ~~fD~ILvDaPCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~  260 (470)
T PRK11933        182 ETFDAILLDAPCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET  260 (470)
T ss_pred             hhcCeEEEcCCCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            569999999999994 31  11       223455566666888999999999999999999986663 56677666555


Q ss_pred             C
Q 016441          171 S  171 (389)
Q Consensus       171 a  171 (389)
                      .
T Consensus       261 ~  261 (470)
T PRK11933        261 Y  261 (470)
T ss_pred             C
Confidence            4

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=90.76  E-value=7  Score=37.18  Aligned_cols=120  Identities=19%  Similarity=0.194  Sum_probs=72.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||-||=|.=-.+.++++ .+ +..++|+-.|. . ..+   .|++|++.   .|+...  ++   +..    ...
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~-~g-~~~v~giDis~-~-~l~---~A~~n~~~---~~~~~~--~~---~~~----~~~  178 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAK-LG-AKKVLAVDIDP-Q-AVE---AARENAEL---NGVELN--VY---LPQ----GDL  178 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHH-cC-CCeEEEEECCH-H-HHH---HHHHHHHH---cCCCce--EE---Ecc----CCC
Confidence            4678999999998655555544 44 33577765542 2 222   25566542   333110  01   110    011


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      .||.|+.|..                 ...+..++..+..+|+++|.+.++-...  ...-.+.+..++.||.+.+..
T Consensus       179 ~fD~Vvani~-----------------~~~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~  237 (250)
T PRK00517        179 KADVIVANIL-----------------ANPLLELAPDLARLLKPGGRLILSGILE--EQADEVLEAYEEAGFTLDEVL  237 (250)
T ss_pred             CcCEEEEcCc-----------------HHHHHHHHHHHHHhcCCCcEEEEEECcH--hhHHHHHHHHHHCCCEEEEEE
Confidence            7999999852                 1124567888999999999999873222  133456777888999887653

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=90.74  E-value=6.4  Score=38.78  Aligned_cols=137  Identities=20%  Similarity=0.224  Sum_probs=85.5

Q ss_pred             eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcce
Q 016441           26 QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDR  105 (389)
Q Consensus        26 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDr  105 (389)
                      +||=+|=|.=-=|.+||++.. ..+|+||=... +.+.    -|+.|.+.+.-..+.++.+ |.-.     .+++ +||.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~-~Al~----~A~~Na~~~~l~~~~~~~~-dlf~-----~~~~-~fDl  179 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISP-DALA----LARENAERNGLVRVLVVQS-DLFE-----PLRG-KFDL  179 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCc-CCeEEEEECCH-HHHH----HHHHHHHHcCCccEEEEee-eccc-----ccCC-ceeE
Confidence            799999998888888888763 35888886654 3332    2566666544211233333 3222     1233 8999


Q ss_pred             EEEcCCCCCCCCCccch---------HHHH--HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCC-c
Q 016441          106 IIFNFPHAGFYGKEDNH---------LLIE--MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSS-L  173 (389)
Q Consensus       106 IIFNFPH~G~~gkED~~---------r~Ir--~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aG-L  173 (389)
                      ||||=|=+-....+...         ..+-  .-.++++.|+..+..+|+++|-+.+-+-.++.   =.++++-.+.| +
T Consensus       180 IVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~---~~v~~~~~~~~~~  256 (280)
T COG2890         180 IVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG---EAVKALFEDTGFF  256 (280)
T ss_pred             EEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH---HHHHHHHHhcCCc
Confidence            99999998753001100         0110  13568899999999999999999988874431   14566666777 4


Q ss_pred             EEEEE
Q 016441          174 SLIWC  178 (389)
Q Consensus       174 ~L~~~  178 (389)
                      ..+..
T Consensus       257 ~~v~~  261 (280)
T COG2890         257 EIVET  261 (280)
T ss_pred             eEEEE
Confidence            43433

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=90.72  E-value=0.96  Score=34.52  Aligned_cols=95  Identities=19%  Similarity=0.272  Sum_probs=59.8

Q ss_pred             EEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceEE
Q 016441           28 LLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRII  107 (389)
Q Consensus        28 LLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrII  107 (389)
                      |=+|=|.=.++..|++.  .+.+++++-.+..  ..+      ..-+.++..++. ....|+++|    .+....||.|+
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~--~~~------~~~~~~~~~~~~-~~~~d~~~l----~~~~~sfD~v~   65 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEE--MLE------QARKRLKNEGVS-FRQGDAEDL----PFPDNSFDVVF   65 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HH--HHH------HHHHHTTTSTEE-EEESBTTSS----SS-TT-EEEEE
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHH--HHH------HHHhcccccCch-heeehHHhC----ccccccccccc
Confidence            34677888889999887  3567777766532  221      122233344555 666778887    34568999999


Q ss_pred             EcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441          108 FNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV  151 (389)
Q Consensus       108 FNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV  151 (389)
                      .+.=.-=.              +=...+++.+..+|+|+|.+.|
T Consensus        66 ~~~~~~~~--------------~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   66 SNSVLHHL--------------EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EESHGGGS--------------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccceeec--------------cCHHHHHHHHHHHcCcCeEEeC
Confidence            87532211              1256889999999999998875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=90.53  E-value=1.8  Score=44.42  Aligned_cols=135  Identities=16%  Similarity=0.185  Sum_probs=79.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=+|=|-=.||+.||+..   ..++|  .|..++..+   .|+.|++...-.++.++. -|+.++-........
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~~---~~V~~--vE~~~~av~---~a~~n~~~~~~~nv~~~~-~d~~~~l~~~~~~~~  361 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQA---KSVVG--IEVVPESVE---KAQQNAELNGIANVEFLA-GTLETVLPKQPWAGQ  361 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHhC---CEEEE--EEcCHHHHH---HHHHHHHHhCCCceEEEe-CCHHHHHHHHHhcCC
Confidence            456789888888888888888753   34554  553333333   467777654433455544 466543111112345


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCc-ccHHHHHhhCCcEEEEEee
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSN-WNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s-WnIe~LAa~aGL~L~~~~~  180 (389)
                      .||.|++|=|..|.            ..+++.    .... +++++-|+|+ |+  |-+. =+++.| .+.|+.+....+
T Consensus       362 ~~D~vi~dPPr~G~------------~~~~l~----~l~~-l~~~~ivyvs-c~--p~tlard~~~l-~~~gy~~~~~~~  420 (431)
T TIGR00479       362 IPDVLLLDPPRKGC------------AAEVLR----TIIE-LKPERIVYVS-CN--PATLARDLEFL-CKEGYGITWVQP  420 (431)
T ss_pred             CCCEEEECcCCCCC------------CHHHHH----HHHh-cCCCEEEEEc-CC--HHHHHHHHHHH-HHCCeeEEEEEE
Confidence            69999999998873            112222    2222 6777766665 33  4221 133333 356899999999


Q ss_pred             CCCCCCCC
Q 016441          181 FKIEDYPA  188 (389)
Q Consensus       181 F~~~~YPG  188 (389)
                      ||  .||.
T Consensus       421 ~D--mFP~  426 (431)
T TIGR00479       421 VD--MFPH  426 (431)
T ss_pred             ec--cCCC
Confidence            98  6774

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=90.44  E-value=0.64  Score=39.28  Aligned_cols=120  Identities=21%  Similarity=0.258  Sum_probs=78.8

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+..+||=||=|.=.|+..|++.   +..++++-..  +.+.++            ..-..+.+.  +..    .....
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~--~~~~~~------------~~~~~~~~~--~~~----~~~~~   76 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDIS--PQMIEK------------RNVVFDNFD--AQD----PPFPD   76 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESS--HHHHHH------------TTSEEEEEE--CHT----HHCHS
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECC--HHHHhh------------hhhhhhhhh--hhh----hhccc
Confidence            567789999999999999999664   3366655443  334333            111122221  111    11245


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC---------------------CC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV---------------------PF  159 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~---------------------PY  159 (389)
                      +.||.|+.+  ++=- -..        +   ...+++....+|+|+|.+.++.-...                     .|
T Consensus        77 ~~fD~i~~~--~~l~-~~~--------d---~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (161)
T PF13489_consen   77 GSFDLIICN--DVLE-HLP--------D---PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFF  142 (161)
T ss_dssp             SSEEEEEEE--SSGG-GSS--------H---HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEB
T ss_pred             cchhhHhhH--HHHh-hcc--------c---HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccC
Confidence            789999998  3321 111        1   56889999999999999999876531                     14


Q ss_pred             CcccHHHHHhhCCcEEEE
Q 016441          160 SNWNIKELAIGSSLSLIW  177 (389)
Q Consensus       160 ~sWnIe~LAa~aGL~L~~  177 (389)
                      +.+.+..+++++||.+++
T Consensus       143 ~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen  143 SPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             BHHHHHHHHHHTTEEEEE
T ss_pred             CHHHHHHHHHHCCCEEEE
Confidence            568888999999998875

...

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=90.09  E-value=3.2  Score=38.63  Aligned_cols=104  Identities=18%  Similarity=0.269  Sum_probs=64.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+.++||=||-|.=.++..|++..+....+  |+.|-.+++.+   .++.|++.+.-.++++.. -|+....    ....
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V--~~vE~~~~~~~---~a~~~l~~~g~~~v~~~~-gd~~~~~----~~~~  144 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKV--VTIERIPELAE---KAKKTLKKLGYDNVEVIV-GDGTLGY----EENA  144 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEE--EEEeCCHHHHH---HHHHHHHHcCCCCeEEEE-CCcccCC----CcCC
Confidence            467899999999999999998876543344  45554455544   266676654322344333 4554421    1346


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      .||+|+.+.-      .++          +...    ..+.|++||.+.+.+.+
T Consensus       145 ~fD~I~~~~~------~~~----------~~~~----l~~~LkpgG~lvi~~~~  178 (212)
T PRK13942        145 PYDRIYVTAA------GPD----------IPKP----LIEQLKDGGIMVIPVGS  178 (212)
T ss_pred             CcCEEEECCC------ccc----------chHH----HHHhhCCCcEEEEEEcC
Confidence            8999998631      111          1112    23479999999997743

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=89.86  E-value=6.4  Score=39.34  Aligned_cols=132  Identities=16%  Similarity=0.213  Sum_probs=77.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-KLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+.+||=||=|+=.|+..+++. + +..|+  ..|....+..+.. +  .-..+. ...+.++ ..|+..+..     ..
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~-g-~~~V~--GiD~S~~~l~q~~-a--~~~~~~~~~~i~~~-~~d~e~lp~-----~~  188 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGA-G-AKLVV--GIDPSQLFLCQFE-A--VRKLLGNDQRAHLL-PLGIEQLPA-----LK  188 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHc-C-CCEEE--EEcCCHHHHHHHH-H--HHHhcCCCCCeEEE-eCCHHHCCC-----cC
Confidence            4678999998888888888876 3 23344  4664333332211 1  111111 1234443 346666643     46


Q ss_pred             CcceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe--cCCC------C---CC----cc--
Q 016441          102 KFDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH--KTTV------P---FS----NW--  162 (389)
Q Consensus       102 ~FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL--k~g~------P---Y~----sW--  162 (389)
                      .||.|+.+  +-|.                .=...+|+.+..+|++||++.++.  .++.      |   |.    .|  
T Consensus       189 ~FD~V~s~~vl~H~----------------~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~l  252 (322)
T PRK15068        189 AFDTVFSMGVLYHR----------------RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFI  252 (322)
T ss_pred             CcCEEEECChhhcc----------------CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeC
Confidence            79999974  2222                113468899999999999998763  1221      2   21    12  


Q ss_pred             ----cHHHHHhhCCcEEEEEeeCCC
Q 016441          163 ----NIKELAIGSSLSLIWCSEFKI  183 (389)
Q Consensus       163 ----nIe~LAa~aGL~L~~~~~F~~  183 (389)
                          .++.+.+++||..++.+....
T Consensus       253 ps~~~l~~~L~~aGF~~i~~~~~~~  277 (322)
T PRK15068        253 PSVPALKNWLERAGFKDVRIVDVSV  277 (322)
T ss_pred             CCHHHHHHHHHHcCCceEEEEeCCC
Confidence                246677788888887765543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=89.78  E-value=0.82  Score=43.28  Aligned_cols=107  Identities=21%  Similarity=0.269  Sum_probs=70.7

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      -.++++||-||-|-==+|..|+...+....++  +.|..++|.+   .|+.|++.+.-.++.++++ |+..--    ...
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv--~vE~~~~l~~---~A~~~l~~~~~~nv~~~~g-dg~~g~----~~~  139 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVV--SVERDPELAE---RARRNLARLGIDNVEVVVG-DGSEGW----PEE  139 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEE--EEESBHHHHH---HHHHHHHHHTTHSEEEEES--GGGTT----GGG
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEE--EECccHHHHH---HHHHHHHHhccCceeEEEc-chhhcc----ccC
Confidence            45789999999998888888888776432233  6676677765   4889999988778888887 554421    134


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                      .+||+|+.+.--..          +  -.    .+    .+.|++||.+.+-+.++.
T Consensus       140 apfD~I~v~~a~~~----------i--p~----~l----~~qL~~gGrLV~pi~~~~  176 (209)
T PF01135_consen  140 APFDRIIVTAAVPE----------I--PE----AL----LEQLKPGGRLVAPIGQGG  176 (209)
T ss_dssp             -SEEEEEESSBBSS--------------H----HH----HHTEEEEEEEEEEESSSS
T ss_pred             CCcCEEEEeeccch----------H--HH----HH----HHhcCCCcEEEEEEccCC
Confidence            68999999853321          1  11    22    245899999999998743

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=89.37  E-value=6.3  Score=40.86  Aligned_cols=135  Identities=16%  Similarity=0.174  Sum_probs=79.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=+|=|.=.||++||+..   ..++|  .|..+++.+   .|+.|++...-.++.+ ..-|+.+.-....+...
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~---~~V~g--vD~s~~al~---~A~~n~~~~~~~~v~~-~~~d~~~~l~~~~~~~~  366 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA---AEVVG--VEGVEAMVE---RARENARRNGLDNVTF-YHANLEEDFTDQPWALG  366 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC---CEEEE--EeCCHHHHH---HHHHHHHHcCCCceEE-EEeChHHhhhhhhhhcC
Confidence            356789888877778888888763   35655  554344443   3667776543223433 34466542211112345


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      .||.|+.|=|-.|. .  +          .+    +.... +++++-|+|+-.-..  -.=++..|. +.||.+.+..+|
T Consensus       367 ~fD~Vi~dPPr~g~-~--~----------~~----~~l~~-~~~~~ivyvSCnp~t--laRDl~~L~-~~gY~l~~i~~~  425 (443)
T PRK13168        367 GFDKVLLDPPRAGA-A--E----------VM----QALAK-LGPKRIVYVSCNPAT--LARDAGVLV-EAGYRLKRAGML  425 (443)
T ss_pred             CCCEEEECcCCcCh-H--H----------HH----HHHHh-cCCCeEEEEEeChHH--hhccHHHHh-hCCcEEEEEEEe
Confidence            79999999999984 1  1          11    11111 477777777753221  112444443 578999999999


Q ss_pred             CCCCCCC
Q 016441          182 KIEDYPA  188 (389)
Q Consensus       182 ~~~~YPG  188 (389)
                      |  .||.
T Consensus       426 D--mFP~  430 (443)
T PRK13168        426 D--MFPH  430 (443)
T ss_pred             c--cCCC
Confidence            8  6774

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=89.28  E-value=4.6  Score=37.13  Aligned_cols=137  Identities=12%  Similarity=0.120  Sum_probs=73.3

Q ss_pred             ccccC-CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCC
Q 016441           16 KWIKH-YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTME   93 (389)
Q Consensus        16 K~~~~-Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~   93 (389)
                      +|+.. -.+..+||=||=|.=.++..|++.   +..|++.-.+  +++.+   .|.+++....... .|- .-.|+..+.
T Consensus        47 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s--~~~i~---~a~~~~~~~~~~~-~i~~~~~d~~~~~  117 (219)
T TIGR02021        47 DWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDIS--EQMVQ---MARNRAQGRDVAG-NVEFEVNDLLSLC  117 (219)
T ss_pred             HHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECC--HHHHH---HHHHHHHhcCCCC-ceEEEECChhhCC
Confidence            44542 345789999999988898888864   2356555443  33332   1333433221101 222 234555442


Q ss_pred             CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC----------------
Q 016441           94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV----------------  157 (389)
Q Consensus        94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----------------  157 (389)
                             ..||.|+..+.-.-. ..           .-+...++.+..+++++  +.|+.....                
T Consensus       118 -------~~fD~ii~~~~l~~~-~~-----------~~~~~~l~~i~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~  176 (219)
T TIGR02021       118 -------GEFDIVVCMDVLIHY-PA-----------SDMAKALGHLASLTKER--VIFTFAPKTAWLAFLKMIGELFPGS  176 (219)
T ss_pred             -------CCcCEEEEhhHHHhC-CH-----------HHHHHHHHHHHHHhCCC--EEEEECCCchHHHHHHHHHhhCcCc
Confidence                   579999986542211 00           11334455555556533  444442211                


Q ss_pred             -------CCCcccHHHHHhhCCcEEEEEeeCC
Q 016441          158 -------PFSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       158 -------PY~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                             ++....++++++.+|+.++.+..+.
T Consensus       177 ~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~  208 (219)
T TIGR02021       177 SRATSAYLHPMTDLERALGELGWKIVREGLVS  208 (219)
T ss_pred             ccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence                   1234567888888898888775443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00536 speE spermidine synthase; Provisional

Probab=89.10  E-value=2.7  Score=41.41  Aligned_cols=112  Identities=15%  Similarity=0.057  Sum_probs=71.0

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhh-hhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKY-KRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY-~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      -+|||++|=||--=++=+.|+   +.+|+---.|.+ -++.+|| |...   +.+.+--++|+..+.     +   ...+
T Consensus        73 pk~VLIiGGGDGg~~REvLkh---~~~v~mVeID~~Vv~~~k~~lP~~~---~~~~DpRv~l~~~~~-----~---~~~~  138 (262)
T PRK00536         73 LKEVLIVDGFDLELAHQLFKY---DTHVDFVQADEKILDSFISFFPHFH---EVKNNKNFTHAKQLL-----D---LDIK  138 (262)
T ss_pred             CCeEEEEcCCchHHHHHHHCc---CCeeEEEECCHHHHHHHHHHCHHHH---HhhcCCCEEEeehhh-----h---ccCC
Confidence            468999999997666666654   237777777753 3455665 5432   357777788886321     1   1236


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-C---cccHHHHHhh
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-S---NWNIKELAIG  170 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~---sWnIe~LAa~  170 (389)
                      +||.||-+=.   + .               ..|++.+++.|+++|-+. |-.+ .|+ .   -|.|.+--++
T Consensus       139 ~fDVIIvDs~---~-~---------------~~fy~~~~~~L~~~Gi~v-~Qs~-sp~~~~~~~~~i~~~l~~  190 (262)
T PRK00536        139 KYDLIICLQE---P-D---------------IHKIDGLKRMLKEDGVFI-SVAK-HPLLEHVSMQNALKNMGD  190 (262)
T ss_pred             cCCEEEEcCC---C-C---------------hHHHHHHHHhcCCCcEEE-ECCC-CcccCHHHHHHHHHHHHh
Confidence            7999999821   1 0               389999999999988654 3333 343 2   2555554443

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=89.09  E-value=3.6  Score=40.80  Aligned_cols=106  Identities=23%  Similarity=0.345  Sum_probs=77.0

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeccccCCCCCCCCc
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG--TCILHGVDATTMELHPDL   98 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G--v~VlfgVDATkL~~~~~L   98 (389)
                      -+...+||=.|=|.=+.|.+||...+..-.|  |+||-.++-.+   .|.+|+++. ..+  +++.. -|+++-..    
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v--~tyE~r~d~~k---~A~~Nl~~~-~l~d~v~~~~-~Dv~~~~~----  160 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHV--TTYEIREDFAK---TARENLSEF-GLGDRVTLKL-GDVREGID----  160 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceE--EEEEecHHHHH---HHHHHHHHh-ccccceEEEe-cccccccc----
Confidence            4668899999999999999999988754455  46776665544   599999886 232  23222 45555332    


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                       ...||.|+-+-|-.=                   ++...+..+|+++|.+.+=+-+-+
T Consensus       161 -~~~vDav~LDmp~PW-------------------~~le~~~~~Lkpgg~~~~y~P~ve  199 (256)
T COG2519         161 -EEDVDAVFLDLPDPW-------------------NVLEHVSDALKPGGVVVVYSPTVE  199 (256)
T ss_pred             -ccccCEEEEcCCChH-------------------HHHHHHHHHhCCCcEEEEEcCCHH
Confidence             248999999999763                   678889999999998887665543

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=89.08  E-value=4.1  Score=36.71  Aligned_cols=102  Identities=21%  Similarity=0.270  Sum_probs=64.0

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF  103 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F  103 (389)
                      ..+||=||=|.=+++..|++.. ....++++-.+  .+..+.   +..++.    ..+.+ ...|++.+.    +....|
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~--~~~~~~---~~~~~~----~~~~~-~~~d~~~~~----~~~~~f   99 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDIS--AGMLAQ---AKTKLS----ENVQF-ICGDAEKLP----LEDSSF   99 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeCh--HHHHHH---HHHhcC----CCCeE-EecchhhCC----CCCCce
Confidence            3689999999989999998875 33445555543  332221   222211    13333 335666543    234679


Q ss_pred             ceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          104 DRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       104 DrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      |.|+.++..--.   .|           ...++..+..+|+++|.+.++..
T Consensus       100 D~vi~~~~l~~~---~~-----------~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       100 DLIVSNLALQWC---DD-----------LSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             eEEEEhhhhhhc---cC-----------HHHHHHHHHHHcCCCcEEEEEeC
Confidence            999998753221   11           23688999999999999998754

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=88.84  E-value=4.4  Score=41.21  Aligned_cols=121  Identities=22%  Similarity=0.288  Sum_probs=80.9

Q ss_pred             eEEEEecCChhHHHHHHHHhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCC-CEEEec-cccCCCCCCCCcCCCC
Q 016441           26 QILLVGEGDFSFSLCLALAFGSASNICASSLD-SYDDVIQKYKRAKSNLDNLKKLG-TCILHG-VDATTMELHPDLRTRK  102 (389)
Q Consensus        26 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD-SeeeL~~KY~~A~~Ni~~Lr~~G-v~Vlfg-VDATkL~~~~~Lk~~~  102 (389)
                      .||=||=|.=--|++|+..++   +.++|.-| |...+.    =|.+|.+.|+-.| +.|.|. .--.....++ +..++
T Consensus       151 ~ildlgtGSGaIslsll~~L~---~~~v~AiD~S~~Ai~----La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l~~~~  222 (328)
T KOG2904|consen  151 HILDLGTGSGAISLSLLHGLP---QCTVTAIDVSKAAIK----LAKENAQRLKLSGRIEVIHNIMESDASDEHP-LLEGK  222 (328)
T ss_pred             eEEEecCCccHHHHHHHhcCC---CceEEEEeccHHHHH----HHHHHHHHHhhcCceEEEecccccccccccc-cccCc
Confidence            799999998878888877664   56666666 333332    3789999999988 566643 2222233333 45688


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHH------------hHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEM------------HRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      .|.||-|=|=+-..-.++-.-.|+.            --+.+.+|+.-|..+|+++|.+.+.+.
T Consensus       223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            9999999998863111111111221            134567899999999999999999987

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=88.54  E-value=4.2  Score=43.19  Aligned_cols=110  Identities=17%  Similarity=0.202  Sum_probs=77.5

Q ss_pred             HHHHHhCC--CEEEeccccCCCCCCCCcCCCCcceEEEcCCCCC--CCCCcc------chHHHHHhHHHHHHHHHhhHhc
Q 016441           73 LDNLKKLG--TCILHGVDATTMELHPDLRTRKFDRIIFNFPHAG--FYGKED------NHLLIEMHRSLVRDFFRNSSGM  142 (389)
Q Consensus        73 i~~Lr~~G--v~VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G--~~gkED------~~r~Ir~nr~LL~~FF~SA~~l  142 (389)
                      ..-|.++|  -+|+-.-|+..+...- + ...||||.-+=|+.|  ..+|..      ....|..+..|=+..|.+|.++
T Consensus       283 ~~n~~rlGv~ntiv~n~D~~ef~~~~-~-~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~l  360 (460)
T KOG1122|consen  283 KANLHRLGVTNTIVSNYDGREFPEKE-F-PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDL  360 (460)
T ss_pred             HHHHHHhCCCceEEEccCcccccccc-c-CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhh
Confidence            33444555  3666677777654322 2 238999999999999  322221      2335667778888889999999


Q ss_pred             ccCCCeEEEEecCCCC-CCcccHHHHHhhC-CcEEEEEeeCCCC
Q 016441          143 LRDGGEVHVSHKTTVP-FSNWNIKELAIGS-SLSLIWCSEFKIE  184 (389)
Q Consensus       143 L~~~GeIHVTLk~g~P-Y~sWnIe~LAa~a-GL~L~~~~~F~~~  184 (389)
                      +++||-|.-+.|+-.| -+.|.|..+-++. .++|....++-..
T Consensus       361 v~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~iG~  404 (460)
T KOG1122|consen  361 VKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDIGG  404 (460)
T ss_pred             ccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccCCC
Confidence            9999999999998765 4789888866555 8888877665433

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=88.51  E-value=4.6  Score=39.20  Aligned_cols=101  Identities=18%  Similarity=0.176  Sum_probs=61.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEe-ccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILH-GVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vlf-gVDATkL~~~~~Lk~~  101 (389)
                      +..+||=||=|.=.++..|++.   +..|+|.  |..++..+.   ++++.+.   .|+.|.. ..|+....    + ..
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~av--D~s~~ai~~---~~~~~~~---~~l~v~~~~~D~~~~~----~-~~  183 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL---GFDVTAV--DINQQSLEN---LQEIAEK---ENLNIRTGLYDINSAS----I-QE  183 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC---CCEEEEE--ECCHHHHHH---HHHHHHH---cCCceEEEEechhccc----c-cC
Confidence            4458999999988888888874   3456554  644443332   3444432   3332221 22443321    2 46


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV  151 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV  151 (389)
                      .||.|+-++-.--            .+.+.+..+++.+..+|+++|.+.+
T Consensus       184 ~fD~I~~~~vl~~------------l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        184 EYDFILSTVVLMF------------LNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             CccEEEEcchhhh------------CCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            7999998764211            1233466889999999999998554

>PLN02823 spermine synthase

Probab=87.40  E-value=1.7  Score=44.03  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=69.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .-++||++|=|+-+-++-++++. +...|++--+|.. -++.++|-..  +-..++...++|+.+ ||.+.-+.   ..+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~--~~~~~~dprv~v~~~-Da~~~L~~---~~~  175 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTV--NREAFCDKRLELIIN-DARAELEK---RDE  175 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccc--ccccccCCceEEEEC-hhHHHHhh---CCC
Confidence            34689999999999988887753 3467888888843 2333444211  112244555666654 44442111   236


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHH-hhHhcccCCCeEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFR-NSSGMLRDGGEVHV  151 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~-SA~~lL~~~GeIHV  151 (389)
                      +||.||.+.+..-..|.        ..+-.-..||+ .++..|+++|-+.+
T Consensus       176 ~yDvIi~D~~dp~~~~~--------~~~Lyt~eF~~~~~~~~L~p~Gvlv~  218 (336)
T PLN02823        176 KFDVIIGDLADPVEGGP--------CYQLYTKSFYERIVKPKLNPGGIFVT  218 (336)
T ss_pred             CccEEEecCCCccccCc--------chhhccHHHHHHHHHHhcCCCcEEEE
Confidence            79999999764210011        11122358998 89999999997654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=86.81  E-value=10  Score=37.05  Aligned_cols=101  Identities=19%  Similarity=0.303  Sum_probs=62.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~Lk~~  101 (389)
                      ++.+||=||=|.=..+.++++ +| +..++|.-.|.. .+ +   .+++|++.- .....+. ...|   +.   .....
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~-~g-~~~V~avDid~~-al-~---~a~~n~~~n-~~~~~~~~~~~~---~~---~~~~~  224 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALK-LG-AAKVVGIDIDPL-AV-E---SARKNAELN-QVSDRLQVKLIY---LE---QPIEG  224 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHH-cC-CCeEEEEECCHH-HH-H---HHHHHHHHc-CCCcceEEEecc---cc---cccCC
Confidence            467999999999777777765 44 457888776643 22 1   255565431 1111111 1112   11   11235


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      +||.|+.|..  .               .-+..++..+..+|+++|.+.++-.
T Consensus       225 ~fDlVvan~~--~---------------~~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       225 KADVIVANIL--A---------------EVIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             CceEEEEecC--H---------------HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            8999999963  1               1135678889999999999988743

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=86.10  E-value=0.24  Score=49.24  Aligned_cols=155  Identities=23%  Similarity=0.282  Sum_probs=75.5

Q ss_pred             hhccccccCCCCCCeEEEEecCChhHHHHH--HHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHH--HHhCCCEEEecc
Q 016441           12 EKEEKWIKHYSSNHQILLVGEGDFSFSLCL--ALAFGSASNICASSLDSYDDVIQKYKRAKSNLDN--LKKLGTCILHGV   87 (389)
Q Consensus        12 ~~~~K~~~~Yss~~rILLVGEGDFSFSlSL--a~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~--Lr~~Gv~VlfgV   87 (389)
                      -+..+|+..++.+.+||=+    ||++-+.  +-+.+.+..  +|+.|.....++   .+++|...  +....++.+ .-
T Consensus       112 R~nR~~v~~~~~gkrvLnl----FsYTGgfsv~Aa~gGA~~--v~~VD~S~~al~---~a~~N~~lNg~~~~~~~~~-~~  181 (286)
T PF10672_consen  112 RENRKWVRKYAKGKRVLNL----FSYTGGFSVAAAAGGAKE--VVSVDSSKRALE---WAKENAALNGLDLDRHRFI-QG  181 (286)
T ss_dssp             HHHHHHHHHHCTTCEEEEE----T-TTTHHHHHHHHTTESE--EEEEES-HHHHH---HHHHHHHHTT-CCTCEEEE-ES
T ss_pred             HhhHHHHHHHcCCCceEEe----cCCCCHHHHHHHHCCCCE--EEEEeCCHHHHH---HHHHHHHHcCCCccceEEE-ec
Confidence            4456899999999999965    6654333  222333333  457786555554   26666542  221222222 33


Q ss_pred             ccCC-CCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHH
Q 016441           88 DATT-MELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKE  166 (389)
Q Consensus        88 DATk-L~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~  166 (389)
                      |+-+ |.. . -+..+||.||.+=|=.. +++.+.   .+..++|    +..|.++|+++|.+.++.|... .+.=.+.+
T Consensus       182 Dvf~~l~~-~-~~~~~fD~IIlDPPsF~-k~~~~~---~~~y~~L----~~~a~~ll~~gG~l~~~scs~~-i~~~~l~~  250 (286)
T PF10672_consen  182 DVFKFLKR-L-KKGGRFDLIILDPPSFA-KSKFDL---ERDYKKL----LRRAMKLLKPGGLLLTCSCSHH-ISPDFLLE  250 (286)
T ss_dssp             -HHHHHHH-H-HHTT-EEEEEE--SSEE-SSTCEH---HHHHHHH----HHHHHHTEEEEEEEEEEE--TT-S-HHHHHH
T ss_pred             CHHHHHHH-H-hcCCCCCEEEECCCCCC-CCHHHH---HHHHHHH----HHHHHHhcCCCCEEEEEcCCcc-cCHHHHHH
Confidence            5543 211 0 13468999999999776 455432   2333444    5678899999999988888653 22112333


Q ss_pred             HHhhC--CcEEEEEeeCCCCCCCC
Q 016441          167 LAIGS--SLSLIWCSEFKIEDYPA  188 (389)
Q Consensus       167 LAa~a--GL~L~~~~~F~~~~YPG  188 (389)
                      +.+++  .+.+++. --.+++||.
T Consensus       251 ~~~~~a~~~~~~~~-~~~p~df~~  273 (286)
T PF10672_consen  251 AVAEAAREVEFIER-LGQPPDFPD  273 (286)
T ss_dssp             HHHHHHHHCEEEEE-EE-------
T ss_pred             HHHHhCccceEeee-ecccccccc
Confidence            33332  3334332 236777885

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=85.36  E-value=3.8  Score=40.01  Aligned_cols=131  Identities=17%  Similarity=0.272  Sum_probs=80.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=.|-|.=|+|.+|++..+..-.|  .|||-.++-.+   .|.+|++...-.+...++--|+.+-.-...+ ..
T Consensus        39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v--~t~E~~~~~~~---~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~~  112 (247)
T PF08704_consen   39 RPGSRVLEAGTGSGSLTHALARAVGPTGHV--YTYEFREDRAE---KARKNFERHGLDDNVTVHHRDVCEEGFDEEL-ES  112 (247)
T ss_dssp             -TT-EEEEE--TTSHHHHHHHHHHTTTSEE--EEEESSHHHHH---HHHHHHHHTTCCTTEEEEES-GGCG--STT--TT
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHhCCCeEE--EccccCHHHHH---HHHHHHHHcCCCCCceeEecceecccccccc-cC
Confidence            468899999999999999999998743344  46776665544   4888877754434445556676642221112 36


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcc-cCCCeEEEEecCCCCCCcccHHH---HHhhCCcEEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGML-RDGGEVHVSHKTTVPFSNWNIKE---LAIGSSLSLIW  177 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL-~~~GeIHVTLk~g~PY~sWnIe~---LAa~aGL~L~~  177 (389)
                      .+|.|+-+-|..=                   ....+|.+.| +++|.|.+=.-.=+     |+.+   ..++.||..++
T Consensus       113 ~~DavfLDlp~Pw-------------------~~i~~~~~~L~~~gG~i~~fsP~ie-----Qv~~~~~~L~~~gf~~i~  168 (247)
T PF08704_consen  113 DFDAVFLDLPDPW-------------------EAIPHAKRALKKPGGRICCFSPCIE-----QVQKTVEALREHGFTDIE  168 (247)
T ss_dssp             SEEEEEEESSSGG-------------------GGHHHHHHHE-EEEEEEEEEESSHH-----HHHHHHHHHHHTTEEEEE
T ss_pred             cccEEEEeCCCHH-------------------HHHHHHHHHHhcCCceEEEECCCHH-----HHHHHHHHHHHCCCeeeE
Confidence            7999999999874                   2355677888 78887765543222     3333   33346887766


Q ss_pred             EeeCC
Q 016441          178 CSEFK  182 (389)
Q Consensus       178 ~~~F~  182 (389)
                      .+.-.
T Consensus       169 ~~Evl  173 (247)
T PF08704_consen  169 TVEVL  173 (247)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK06940 short chain dehydrogenase; Provisional

Probab=84.81  E-value=6.2  Score=37.39  Aligned_cols=77  Identities=12%  Similarity=0.254  Sum_probs=48.6

Q ss_pred             CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc-----
Q 016441           25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL-----   98 (389)
Q Consensus        25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L-----   98 (389)
                      +.+|+.|= . .-.+++|+.+..+.+|++++.+. +.       .++..++|+..|.++ .+.+|.++......+     
T Consensus         3 k~~lItGa-~-gIG~~la~~l~~G~~Vv~~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~   72 (275)
T PRK06940          3 EVVVVIGA-G-GIGQAIARRVGAGKKVLLADYNE-EN-------LEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ   72 (275)
T ss_pred             CEEEEECC-C-hHHHHHHHHHhCCCEEEEEeCCH-HH-------HHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence            45777784 4 57777777776678899987753 22       223345566667654 577888876432111     


Q ss_pred             CCCCcceEEEcCC
Q 016441           99 RTRKFDRIIFNFP  111 (389)
Q Consensus        99 k~~~FDrIIFNFP  111 (389)
                      ...+.|.||.|--
T Consensus        73 ~~g~id~li~nAG   85 (275)
T PRK06940         73 TLGPVTGLVHTAG   85 (275)
T ss_pred             hcCCCCEEEECCC
Confidence            1256899998853

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=84.77  E-value=13  Score=33.78  Aligned_cols=135  Identities=19%  Similarity=0.240  Sum_probs=72.1

Q ss_pred             ccccC--CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EEEe-ccccC
Q 016441           16 KWIKH--YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT--CILH-GVDAT   90 (389)
Q Consensus        16 K~~~~--Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv--~Vlf-gVDAT   90 (389)
                      .|+..  -.+..+||=||-|.=.|+..|++..   ..++++-.  ...+.+   .|+++...   .+.  .|-+ ..|  
T Consensus        54 ~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~--s~~~i~---~a~~~~~~---~~~~~~i~~~~~d--  120 (230)
T PRK07580         54 SWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDI--SPQMVE---EARERAPE---AGLAGNITFEVGD--  120 (230)
T ss_pred             HHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEEC--CHHHHH---HHHHHHHh---cCCccCcEEEEcC--
Confidence            34444  2456789999999888899998752   34554444  233332   13334332   222  2222 233  


Q ss_pred             CCCCCCCcCCCCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC-----------
Q 016441           91 TMELHPDLRTRKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV-----------  157 (389)
Q Consensus        91 kL~~~~~Lk~~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-----------  157 (389)
                       +..    ....||.|+.+..  |...   ++           +...++.+..++.  |.+.|+.....           
T Consensus       121 -~~~----~~~~fD~v~~~~~l~~~~~---~~-----------~~~~l~~l~~~~~--~~~~i~~~~~~~~~~~~~~l~~  179 (230)
T PRK07580        121 -LES----LLGRFDTVVCLDVLIHYPQ---ED-----------AARMLAHLASLTR--GSLIFTFAPYTPLLALLHWIGG  179 (230)
T ss_pred             -chh----ccCCcCEEEEcchhhcCCH---HH-----------HHHHHHHHHhhcC--CeEEEEECCccHHHHHHHHhcc
Confidence             221    1367999998754  3221   11           2233333444443  33444432211           


Q ss_pred             ------------CCCcccHHHHHhhCCcEEEEEeeCCCC
Q 016441          158 ------------PFSNWNIKELAIGSSLSLIWCSEFKIE  184 (389)
Q Consensus       158 ------------PY~sWnIe~LAa~aGL~L~~~~~F~~~  184 (389)
                                  .++.-++.++.+.+||.+.+..++...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  218 (230)
T PRK07580        180 LFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSG  218 (230)
T ss_pred             ccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence                        123346778899999999998887644

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=84.54  E-value=8.4  Score=39.78  Aligned_cols=105  Identities=20%  Similarity=0.190  Sum_probs=65.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=||=|.=.++..|++..   ..++|  .|-..++.++   +   .+.............|+.+..  ..+....
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~g--iD~s~~~l~~---a---~~~~~~~~~i~~~~~d~~~~~--~~~~~~~  103 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA---GQVIA--LDFIESVIKK---N---ESINGHYKNVKFMCADVTSPD--LNISDGS  103 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC---CEEEE--EeCCHHHHHH---H---HHHhccCCceEEEEecccccc--cCCCCCC
Confidence            45689999999999999999863   35654  4533333332   1   111111112223445665432  2244578


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      ||.|+.+++..=.            ...-+..+++.+..+|+++|.|.+.
T Consensus       104 fD~I~~~~~l~~l------------~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        104 VDLIFSNWLLMYL------------SDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             EEEEehhhhHHhC------------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9999999874321            2223578899999999999998775

>PRK06202 hypothetical protein; Provisional

Probab=83.53  E-value=24  Score=32.82  Aligned_cols=79  Identities=15%  Similarity=0.175  Sum_probs=46.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      .+..+||=||=|.=.++..|++... .+.+...|..|-..++.+.   |+.+.   ...++++.. +|+..+..    ..
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~---a~~~~---~~~~~~~~~-~~~~~l~~----~~  127 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAF---ARANP---RRPGVTFRQ-AVSDELVA----EG  127 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH---HHhcc---ccCCCeEEE-Eecccccc----cC
Confidence            5667899888777667777776431 1233445555644444432   32222   234555544 45655543    34


Q ss_pred             CCcceEEEcCC
Q 016441          101 RKFDRIIFNFP  111 (389)
Q Consensus       101 ~~FDrIIFNFP  111 (389)
                      ..||.|+.|+-
T Consensus       128 ~~fD~V~~~~~  138 (232)
T PRK06202        128 ERFDVVTSNHF  138 (232)
T ss_pred             CCccEEEECCe
Confidence            68999999975

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=82.10  E-value=13  Score=34.85  Aligned_cols=102  Identities=19%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ...+||=+|=|.=.++..|++.   +..+++.-+.  .++.+.   +..+..     ... ....|+..+.    +....
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s--~~~l~~---a~~~~~-----~~~-~~~~d~~~~~----~~~~~  103 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLS--PPMLAQ---ARQKDA-----ADH-YLAGDIESLP----LATAT  103 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECC--HHHHHH---HHhhCC-----CCC-EEEcCcccCc----CCCCc
Confidence            4568999998887788888763   3456665433  333321   222211     112 2345666543    34568


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      ||.|+-|++.--.   .|           +..++..+..+|+++|.+.++....
T Consensus       104 fD~V~s~~~l~~~---~d-----------~~~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258        104 FDLAWSNLAVQWC---GN-----------LSTALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             EEEEEECchhhhc---CC-----------HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            9999999875321   22           3467888999999999999986543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=81.89  E-value=11  Score=35.54  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             cccCCCCCCeEEEEecCChhHHHH-HHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           17 WIKHYSSNHQILLVGEGDFSFSLC-LALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        17 ~~~~Yss~~rILLVGEGDFSFSlS-La~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      |+.....+.+||=+|=|.=+|++. |++.   +..+++  .|...+..+   .++.|++.+.-..++++. -|+.+.-..
T Consensus        47 ~l~~~~~~~~vLDl~~GsG~l~l~~lsr~---a~~V~~--vE~~~~a~~---~a~~Nl~~~~~~~v~~~~-~D~~~~l~~  117 (199)
T PRK10909         47 WLAPVIVDARCLDCFAGSGALGLEALSRY---AAGATL--LEMDRAVAQ---QLIKNLATLKAGNARVVN-TNALSFLAQ  117 (199)
T ss_pred             HHhhhcCCCEEEEcCCCccHHHHHHHHcC---CCEEEE--EECCHHHHH---HHHHHHHHhCCCcEEEEE-chHHHHHhh
Confidence            444445567898887777677764 4442   345554  454444433   467787776533455543 466542111


Q ss_pred             CCcCCCCcceEEEcCC-CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441           96 PDLRTRKFDRIIFNFP-HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFP-H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                         ....||.|++|=| +.|.            ..+++....  ...+|.++|-|+|.+-..
T Consensus       118 ---~~~~fDlV~~DPPy~~g~------------~~~~l~~l~--~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        118 ---PGTPHNVVFVDPPFRKGL------------LEETINLLE--DNGWLADEALIYVESEVE  162 (199)
T ss_pred             ---cCCCceEEEECCCCCCCh------------HHHHHHHHH--HCCCcCCCcEEEEEecCC
Confidence               1346999999999 5552            233333332  246788999999987543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=81.61  E-value=4.4  Score=42.30  Aligned_cols=162  Identities=22%  Similarity=0.205  Sum_probs=90.5

Q ss_pred             hhccccccCCCCCCeEEEEecCChhHHHHH--HHHhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCC-CE-EEec
Q 016441           12 EKEEKWIKHYSSNHQILLVGEGDFSFSLCL--ALAFGSASNICASSLD-SYDDVIQKYKRAKSNLDNLKKLG-TC-ILHG   86 (389)
Q Consensus        12 ~~~~K~~~~Yss~~rILLVGEGDFSFSlSL--a~~~gs~~nLvATSlD-SeeeL~~KY~~A~~Ni~~Lr~~G-v~-Vlfg   86 (389)
                      -+..+|+..+..++++|=+    ||++-+.  +-+.+.+..+  |+-| |...|.    -|++|++ |.... .+ -+..
T Consensus       206 R~~R~~l~~~~~GkrvLNl----FsYTGgfSv~Aa~gGA~~v--t~VD~S~~al~----~a~~N~~-LNg~~~~~~~~i~  274 (393)
T COG1092         206 RDNRRALGELAAGKRVLNL----FSYTGGFSVHAALGGASEV--TSVDLSKRALE----WARENAE-LNGLDGDRHRFIV  274 (393)
T ss_pred             HHHHHHHhhhccCCeEEEe----cccCcHHHHHHHhcCCCce--EEEeccHHHHH----HHHHHHH-hcCCCccceeeeh
Confidence            3456788888889999866    5554333  2233333333  4455 333332    3666654 22111 11 1122


Q ss_pred             cccCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcc----
Q 016441           87 VDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW----  162 (389)
Q Consensus        87 VDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW----  162 (389)
                      -||=+.-+...-++.+||.||.+=|=.+. ++....+..+.+..|+.    -|.++|+++|.+.++.|... ...=    
T Consensus       275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r-~k~~~~~~~rdy~~l~~----~~~~iL~pgG~l~~~s~~~~-~~~~~f~~  348 (393)
T COG1092         275 GDVFKWLRKAERRGEKFDLIILDPPSFAR-SKKQEFSAQRDYKDLND----LALRLLAPGGTLVTSSCSRH-FSSDLFLE  348 (393)
T ss_pred             hhHHHHHHHHHhcCCcccEEEECCccccc-CcccchhHHHHHHHHHH----HHHHHcCCCCEEEEEecCCc-cCHHHHHH
Confidence            23332222222245799999999999984 66544444455555544    48899999999999988763 3322    


Q ss_pred             cHHHHHhhCCcEEEEE-eeCCCCCCCCCc
Q 016441          163 NIKELAIGSSLSLIWC-SEFKIEDYPAYN  190 (389)
Q Consensus       163 nIe~LAa~aGL~L~~~-~~F~~~~YPGY~  190 (389)
                      .|..-|...+...... ..-.+.|+|-..
T Consensus       349 ~i~~a~~~~~~~~~~~~~~~~~~D~p~~~  377 (393)
T COG1092         349 IIARAAAAAGRRAQEIEGEGQPPDHPRNA  377 (393)
T ss_pred             HHHHHHHhcCCcEEEeeccCCCCCccccc
Confidence            2334455555544443 566677777443

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=81.17  E-value=4.5  Score=40.28  Aligned_cols=110  Identities=18%  Similarity=0.260  Sum_probs=69.4

Q ss_pred             CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441           25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF  103 (389)
Q Consensus        25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F  103 (389)
                      ++||++|=||=+.++.+.++. +-..+|+--.|.. -++.+||-..-.+...  ..-++|+.+ |+-+.-..   ...+|
T Consensus        78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~-Dg~~~v~~---~~~~f  150 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIID-DGVEFLRD---CEEKF  150 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEec-cHHHHHHh---CCCcC
Confidence            489999999999999999875 4678888888843 4555665322111111  223344433 33332111   12379


Q ss_pred             ceEEEcCCC-CCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          104 DRIIFNFPH-AGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       104 DrIIFNFPH-~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      |.||-+--- .|. +.          .-+-..||+.|...|+++|-+.+-
T Consensus       151 DvIi~D~tdp~gp-~~----------~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         151 DVIIVDSTDPVGP-AE----------ALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CEEEEcCCCCCCc-cc----------ccCCHHHHHHHHHhcCCCcEEEEe
Confidence            999998533 342 21          112368999999999999977766

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=80.94  E-value=5.9  Score=35.22  Aligned_cols=57  Identities=18%  Similarity=0.304  Sum_probs=40.1

Q ss_pred             CCEEEeccccCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441           80 GTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus        80 Gv~VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      +++++.+ |+.+|.    +..+.||.|+.+|   +..-.+|           ...+|+.+..+|+|||.+.|.-..
T Consensus        27 ~i~~~~~-d~~~lp----~~~~~fD~v~~~~---~l~~~~d-----------~~~~l~ei~rvLkpGG~l~i~d~~   83 (160)
T PLN02232         27 CIEWIEG-DAIDLP----FDDCEFDAVTMGY---GLRNVVD-----------RLRAMKEMYRVLKPGSRVSILDFN   83 (160)
T ss_pred             ceEEEEe-chhhCC----CCCCCeeEEEecc---hhhcCCC-----------HHHHHHHHHHHcCcCeEEEEEECC
Confidence            4677666 888874    3457899999875   2111111           347889999999999999887554

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=80.69  E-value=4.4  Score=41.62  Aligned_cols=122  Identities=21%  Similarity=0.273  Sum_probs=75.3

Q ss_pred             CCCCCeE--EEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc
Q 016441           21 YSSNHQI--LLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL   98 (389)
Q Consensus        21 Yss~~rI--LLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L   98 (389)
                      ...+.+|  +.-|=|=||+..|-.   |.+. |+|.-+....-     .-.++|+..=+-.+....+.-||..+....  
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~---g~~~-V~A~diNP~A~-----~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--  254 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKK---GRPK-VYAIDINPDAV-----EYLKENIRLNKVEGRVEPILGDAREVAPEL--  254 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhc---CCce-EEEEecCHHHH-----HHHHHHHHhcCccceeeEEeccHHHhhhcc--
Confidence            3345664  466888888776653   3233 99988774321     113456544333443334555777765432  


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC-CCCccc---HHHHHhhCCc
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV-PFSNWN---IKELAIGSSL  173 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-PY~sWn---Ie~LAa~aGL  173 (389)
                        ..|||||.|.|+...                  .|..-|..+++.+|-||.=...-+ .-..|.   |...|.+.|+
T Consensus       255 --~~aDrIim~~p~~a~------------------~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~  313 (341)
T COG2520         255 --GVADRIIMGLPKSAH------------------EFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY  313 (341)
T ss_pred             --ccCCEEEeCCCCcch------------------hhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccC
Confidence              789999999999653                  688889999999999997654321 112233   4445556654

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=80.63  E-value=5  Score=38.19  Aligned_cols=113  Identities=14%  Similarity=0.095  Sum_probs=68.3

Q ss_pred             cccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCC
Q 016441           17 WIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELH   95 (389)
Q Consensus        17 ~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~   95 (389)
                      ++....+.++||=||=|-=.=+++||...+.+..|++.-.|  ++..   .-|++|++...-. .++++.| ||.+.-..
T Consensus        62 ~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d--~~~~---~~A~~n~~~~gl~~~i~~~~g-da~~~L~~  135 (234)
T PLN02781         62 MLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDID--KEAY---EVGLEFIKKAGVDHKINFIQS-DALSALDQ  135 (234)
T ss_pred             HHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECC--HHHH---HHHHHHHHHcCCCCcEEEEEc-cHHHHHHH
Confidence            44566778899999987666567777765434455555544  3332   2467777654321 2444444 77553111


Q ss_pred             C--CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           96 P--DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        96 ~--~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      .  ......||.|..+-+.                 .-...+|.-+..+|++||.|.+.
T Consensus       136 l~~~~~~~~fD~VfiDa~k-----------------~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        136 LLNNDPKPEFDFAFVDADK-----------------PNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             HHhCCCCCCCCEEEECCCH-----------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence            0  0013579999886332                 12336788889999999987763

>PRK07402 precorrin-6B methylase; Provisional

Probab=80.61  E-value=33  Score=31.11  Aligned_cols=106  Identities=15%  Similarity=0.239  Sum_probs=67.0

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..++++||=+|-|.=+++..+++.. .+..++|.-.+  .++.+   .+++|++.+.-..++++ .-|+...-.  .+ .
T Consensus        38 ~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s--~~~~~---~a~~n~~~~~~~~v~~~-~~d~~~~~~--~~-~  107 (196)
T PRK07402         38 LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERD--EEVVN---LIRRNCDRFGVKNVEVI-EGSAPECLA--QL-A  107 (196)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCC--HHHHH---HHHHHHHHhCCCCeEEE-ECchHHHHh--hC-C
Confidence            3567899999999999999998764 23567766555  33333   36778776644345544 345543111  11 1


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      ..+|+|+...   +    ++           +..+++.+..+|+++|.+.+...
T Consensus       108 ~~~d~v~~~~---~----~~-----------~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        108 PAPDRVCIEG---G----RP-----------IKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             CCCCEEEEEC---C----cC-----------HHHHHHHHHHhcCCCeEEEEEee
Confidence            3468876631   1    11           35778888889999999888754

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=80.41  E-value=11  Score=37.14  Aligned_cols=101  Identities=20%  Similarity=0.183  Sum_probs=61.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH----hCCCEEEeccccCCCCCCCCc
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK----KLGTCILHGVDATTMELHPDL   98 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr----~~Gv~VlfgVDATkL~~~~~L   98 (389)
                      ++.+||=||=|.=++|.+||+.   +.+|+|.=.. ++           +|+.-+    +.|+.|=|  .+...... ..
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~s-e~-----------~I~~Ak~ha~e~gv~i~y--~~~~~edl-~~  120 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDAS-EK-----------PIEVAKLHALESGVNIDY--RQATVEDL-AS  120 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC---CCeeEEecCC-hH-----------HHHHHHHhhhhccccccc--hhhhHHHH-Hh
Confidence            6778999999999999999985   3677775333 21           222211    12333211  11111111 11


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      .+.+||.|+.+=              +-.|-.=...|.++|.+|++|+|.+.++-=+
T Consensus       121 ~~~~FDvV~cmE--------------VlEHv~dp~~~~~~c~~lvkP~G~lf~STin  163 (243)
T COG2227         121 AGGQFDVVTCME--------------VLEHVPDPESFLRACAKLVKPGGILFLSTIN  163 (243)
T ss_pred             cCCCccEEEEhh--------------HHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence            237899999762              1122222446999999999999999887544

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=80.23  E-value=38  Score=33.47  Aligned_cols=136  Identities=17%  Similarity=0.243  Sum_probs=78.5

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      +|+... ...+||=+|=|.=.|++.||+.   +..++|.-.+  ....+   .|+.|++...-..+.+ ..-|+.++...
T Consensus       167 ~~l~~~-~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s--~~av~---~A~~n~~~~~l~~v~~-~~~D~~~~~~~  236 (315)
T PRK03522        167 DWVREL-PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEIS--AEAIA---CAKQSAAELGLTNVQF-QALDSTQFATA  236 (315)
T ss_pred             HHHHhc-CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCC--HHHHH---HHHHHHHHcCCCceEE-EEcCHHHHHHh
Confidence            454433 3478998888888888888874   2456555444  33332   3667776543223444 34577664321


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEE
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSL  175 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L  175 (389)
                         ....||.||.|=|..|. ++           +++ ..+..    +.+.+-|+|+.....-.  =+++.+   .||.+
T Consensus       237 ---~~~~~D~Vv~dPPr~G~-~~-----------~~~-~~l~~----~~~~~ivyvsc~p~t~~--rd~~~l---~~y~~  291 (315)
T PRK03522        237 ---QGEVPDLVLVNPPRRGI-GK-----------ELC-DYLSQ----MAPRFILYSSCNAQTMA--KDLAHL---PGYRI  291 (315)
T ss_pred             ---cCCCCeEEEECCCCCCc-cH-----------HHH-HHHHH----cCCCeEEEEECCcccch--hHHhhc---cCcEE
Confidence               12469999999998773 11           111 11211    35556666665443311  134444   69999


Q ss_pred             EEEeeCCCCCCCC
Q 016441          176 IWCSEFKIEDYPA  188 (389)
Q Consensus       176 ~~~~~F~~~~YPG  188 (389)
                      .+..+||  .||.
T Consensus       292 ~~~~~~D--mFP~  302 (315)
T PRK03522        292 ERVQLFD--MFPH  302 (315)
T ss_pred             EEEEEec--cCCC
Confidence            9999998  5774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	389
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.82
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	97.74
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.73
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.73
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.64
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	97.62
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.56
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	97.51
3f4k_A	257	Putative methyltransferase; structural genomics, P	97.48
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.43
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.38
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.38
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.37
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.36
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	97.34
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.34
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	97.3
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.27
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.25
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.25
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.25
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.23
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	97.22
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.22
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	97.17
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.16
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	97.14
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.14
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	97.12
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.05
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.05
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.04
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.03
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	97.02
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	97.0
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.99
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.99
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.99
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.98
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	96.98
1xxl_A	239	YCGJ protein; structural genomics, protein structu	96.96
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.95
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.95
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.88
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.84
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.83
3cc8_A	230	Putative methyltransferase; structural genomics, j	96.83
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	96.82
2p7i_A	250	Hypothetical protein; putative methyltransferase,	96.81
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	96.76
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.76
3ocj_A	305	Putative exported protein; structural genomics, PS	96.76
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	96.75
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	96.69
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.69
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.68
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	96.67
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.61
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	96.6
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	96.59
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	96.58
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	96.56
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.56
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	96.55
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	96.54
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.53
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	96.51
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	96.49
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	96.48
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.47
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	96.47
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	96.46
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	96.46
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.46
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.4
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	96.39
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	96.38
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.37
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	96.35
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	96.34
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	96.31
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	96.29
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.28
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	96.28
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	96.27
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	96.24
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.21
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	96.18
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	96.18
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.18
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.16
3i9f_A	170	Putative type 11 methyltransferase; structural gen	96.15
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	96.12
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	96.12
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.11
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.11
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	96.07
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	96.05
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.05
3lcc_A	235	Putative methyl chloride transferase; halide methy	96.04
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	95.99
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	95.98
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	95.97
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	95.94
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	95.94
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	95.91
2pt6_A	321	Spermidine synthase; transferase, structural genom	95.88
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	95.86
2esr_A	177	Methyltransferase; structural genomics, hypothetic	95.85
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	95.82
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	95.82
2i7c_A	283	Spermidine synthase; transferase, structural genom	95.81
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	95.77
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	95.74
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.73
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	95.72
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	95.66
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	95.64
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	95.6
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	95.6
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	95.56
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	95.52
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	95.51
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	95.49
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	95.41
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	95.4
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	95.39
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.38
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.37
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	95.32
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	95.3
2o07_A	304	Spermidine synthase; structural genomics, structur	95.28
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	95.24
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	95.22
1ws6_A	171	Methyltransferase; structural genomics, riken stru	95.21
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	95.11
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	95.1
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	95.06
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	95.05
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	95.03
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	95.02
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	95.0
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	94.97
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	94.95
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	94.93
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	94.91
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	94.8
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	94.75
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	94.66
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	94.66
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	94.63
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	94.53
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	94.38
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	94.37
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	94.33
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	94.3
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	94.27
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	94.23
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	94.22
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	94.21
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	94.2
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	94.19
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	94.09
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	94.03
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	94.02
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	93.98
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	93.92
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	93.91
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	93.76
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	93.73
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	93.7
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	93.7
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	93.7
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	93.7
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	93.63
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	93.6
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	93.49
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	93.42
3ege_A	261	Putative methyltransferase from antibiotic biosyn	93.41
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	93.4
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	93.35
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	93.32
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	93.15
2h00_A	254	Methyltransferase 10 domain containing protein; st	92.93
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	92.93
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	92.89
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	92.82
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	92.71
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	92.71
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	92.66
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	92.66
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	92.63
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	92.56
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	92.55
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	92.54
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	92.23
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	92.23
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	92.1
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	91.95
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	91.94
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	91.81
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	91.61
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	91.6
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	91.44
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	91.43
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	91.27
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	91.03
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	90.99
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	90.86
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	90.55
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	90.35
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	90.15
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	90.11
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	90.01
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	90.0
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	89.89
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	89.48
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	89.44
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	89.08
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	87.56
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	87.53
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	86.08
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	86.01
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	85.97
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	84.39
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	84.28
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	84.11
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	84.04
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	83.24
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	82.56
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	82.03
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	81.62
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	81.54
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	80.83
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	80.73
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	80.66

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.82  E-value=0.00015  Score=62.39  Aligned_cols=156  Identities=12%  Similarity=0.076  Sum_probs=96.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=+|=|.=.++..|++.++....++|.-.+  +++.+   .+++|++...-..-.-+...|+.++...   ...
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~   92 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQ--DKAIA---NTTKKLTDLNLIDRVTLIKDGHQNMDKY---IDC   92 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSC--HHHHH---HHHHHHHHTTCGGGEEEECSCGGGGGGT---CCS
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCCeEEEECCHHHHhhh---ccC
Confidence            457899999999999999999987544466665444  33333   2556655432111134456677776532   236


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHH---HHHh---hCCcEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIK---ELAI---GSSLSL  175 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe---~LAa---~aGL~L  175 (389)
                      .||.|++|+|.......     .+..+.+....+++.+..+|+++|.+.+....+.+.......   ...+   ..++.+
T Consensus        93 ~fD~v~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v  167 (197)
T 3eey_A           93 PVKAVMFNLGYLPSGDH-----SISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIV  167 (197)
T ss_dssp             CEEEEEEEESBCTTSCT-----TCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEE
T ss_pred             CceEEEEcCCcccCccc-----ccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEE
Confidence            89999999977432111     111233345569999999999999999998776543332222   2222   346777


Q ss_pred             EEEeeCCCCCCCCCc
Q 016441          176 IWCSEFKIEDYPAYN  190 (389)
Q Consensus       176 ~~~~~F~~~~YPGY~  190 (389)
                      .....+....-|+|-
T Consensus       168 ~~~~~~~~~~~pp~~  182 (197)
T 3eey_A          168 QRTDFINQANCPPIL  182 (197)
T ss_dssp             EEEEETTCCSCCCEE
T ss_pred             EEEEeccCccCCCeE
Confidence            766666555555443

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.74  E-value=0.00033  Score=58.78  Aligned_cols=129  Identities=18%  Similarity=0.126  Sum_probs=90.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++.   +.+++++-.+  .++.+   .+..++     .++.+. ..|+.++.    +...
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~--~~~~~---~a~~~~-----~~~~~~-~~d~~~~~----~~~~  106 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLD--PILID---YAKQDF-----PEARWV-VGDLSVDQ----ISET  106 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHC-----TTSEEE-ECCTTTSC----CCCC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCC--HHHHH---HHHHhC-----CCCcEE-EcccccCC----CCCC
Confidence            46779999999999999999886   3467766554  22222   133332     134443 44777653    3457


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      .||.|+.+.+-....           ...-...+++.+..+|+++|.+.++......++.-.+.++.+++|+.+.+..
T Consensus       107 ~~D~i~~~~~~~~~~-----------~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  173 (195)
T 3cgg_A          107 DFDLIVSAGNVMGFL-----------AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAF  173 (195)
T ss_dssp             CEEEEEECCCCGGGS-----------CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred             ceeEEEECCcHHhhc-----------ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeee
Confidence            899999985533321           1122468889999999999999999888777788888899999999988764

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.73  E-value=0.00016  Score=61.62  Aligned_cols=120  Identities=11%  Similarity=0.067  Sum_probs=75.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=+|=|.=.++..|++.   +..|+|.-.+  +++.+   .|++|++...-..++++. -|+..+....   ..
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s--~~~l~---~a~~~~~~~~~~~v~~~~-~~~~~l~~~~---~~   88 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQ--EQALG---KTSQRLSDLGIENTELIL-DGHENLDHYV---RE   88 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESC--HHHHH---HHHHHHHHHTCCCEEEEE-SCGGGGGGTC---CS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECC--HHHHH---HHHHHHHHcCCCcEEEEe-CcHHHHHhhc---cC
Confidence            46789999999999999999986   3466665443  33333   366677665434466666 5666654322   46


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP  158 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  158 (389)
                      .||.|++|+|+.-. +.    ..+..+..-...+++.+..+|+|||.+.|+...+.+
T Consensus        89 ~fD~v~~~~~~~~~-~~----~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  140 (185)
T 3mti_A           89 PIRAAIFNLGYLPS-AD----KSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHD  140 (185)
T ss_dssp             CEEEEEEEEC----------------CHHHHHHHHHHHHHHEEEEEEEEEEEC----
T ss_pred             CcCEEEEeCCCCCC-cc----hhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCC
Confidence            79999999876642 11    123334455567889999999999999999887755

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.73  E-value=0.00024  Score=62.48  Aligned_cols=148  Identities=17%  Similarity=0.172  Sum_probs=93.8

Q ss_pred             cccccCCCC-CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCC
Q 016441           15 EKWIKHYSS-NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTME   93 (389)
Q Consensus        15 ~K~~~~Yss-~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~   93 (389)
                      ..|...|.. +.+||=||=|.=.|+..||+.+. ..+++|.-.+  .+..+   .|..|++...-.++.+ ..-|+..+.
T Consensus        32 ~~~~~~f~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s--~~~l~---~a~~~~~~~~~~~v~~-~~~d~~~~~  104 (214)
T 1yzh_A           32 AKWRDLFGNDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQ--KSVLS---YALDKVLEVGVPNIKL-LWVDGSDLT  104 (214)
T ss_dssp             TTHHHHHTSCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESC--HHHHH---HHHHHHHHHCCSSEEE-EECCSSCGG
T ss_pred             cCHHHHcCCCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcC--HHHHH---HHHHHHHHcCCCCEEE-EeCCHHHHH
Confidence            356655653 67899999999999999998863 4567766544  23332   2566665543223444 445777654


Q ss_pred             CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCc
Q 016441           94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSL  173 (389)
Q Consensus        94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL  173 (389)
                      ..  +....||.|+.|||..-.+.+ .     ...+.....|+..+..+|+++|.+.+.... .++.. .+.++.+++|+
T Consensus       105 ~~--~~~~~~D~i~~~~~~~~~~~~-~-----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~-~~~~~~~~~g~  174 (214)
T 1yzh_A          105 DY--FEDGEIDRLYLNFSDPWPKKR-H-----EKRRLTYKTFLDTFKRILPENGEIHFKTDN-RGLFE-YSLVSFSQYGM  174 (214)
T ss_dssp             GT--SCTTCCSEEEEESCCCCCSGG-G-----GGGSTTSHHHHHHHHHHSCTTCEEEEEESC-HHHHH-HHHHHHHHHTC
T ss_pred             hh--cCCCCCCEEEEECCCCccccc-h-----hhhccCCHHHHHHHHHHcCCCcEEEEEeCC-HHHHH-HHHHHHHHCCC
Confidence            32  345679999999996532111 0     011223568899999999999999987532 22333 34445566789


Q ss_pred             EEEEEe
Q 016441          174 SLIWCS  179 (389)
Q Consensus       174 ~L~~~~  179 (389)
                      .+....
T Consensus       175 ~~~~~~  180 (214)
T 1yzh_A          175 KLNGVW  180 (214)
T ss_dssp             EEEEEE
T ss_pred             eeeecc
Confidence            887754

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.64  E-value=0.00063  Score=64.81  Aligned_cols=145  Identities=17%  Similarity=0.190  Sum_probs=100.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=+|=|.=.++..||+..+....|+|.-.+.  ...+   .+..|++.+.-.++.+ ..-|++++..    ...
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~--~~l~---~a~~~~~~~g~~~v~~-~~~D~~~~~~----~~~  186 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE--NRLR---ETRLNLSRLGVLNVIL-FHSSSLHIGE----LNV  186 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCH--HHHH---HHHHHHHHHTCCSEEE-ESSCGGGGGG----GCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCH--HHHH---HHHHHHHHhCCCeEEE-EECChhhccc----ccc
Confidence            4678999999999999999998875445677765442  2222   3667776654334444 4458887643    235


Q ss_pred             CcceEEEcCCCCCCCCC----cc-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhhC
Q 016441          102 KFDRIIFNFPHAGFYGK----ED-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIGS  171 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gk----ED-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~a  171 (389)
                      .||+|+.|-|..|. |.    .+     ....+.....+-..+++.+..+|++||.+.++.|+-.|- +.-.|..+.++.
T Consensus       187 ~fD~Il~d~Pcsg~-g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~  265 (315)
T 1ixk_A          187 EFDKILLDAPCTGS-GTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNF  265 (315)
T ss_dssp             CEEEEEEECCTTST-TTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHS
T ss_pred             cCCEEEEeCCCCCc-ccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcC
Confidence            79999999998773 21    10     123344556667899999999999999999998886654 445667777778


Q ss_pred             CcEEEE
Q 016441          172 SLSLIW  177 (389)
Q Consensus       172 GL~L~~  177 (389)
                      ++.++.
T Consensus       266 ~~~~~~  271 (315)
T 1ixk_A          266 DVELLP  271 (315)
T ss_dssp             SEEEEC
T ss_pred             CCEEec
Confidence            877653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=97.62  E-value=0.00076  Score=58.59  Aligned_cols=138  Identities=12%  Similarity=0.193  Sum_probs=94.2

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+..+||=||=|.=.++..|++..+....+++.-.+  +++.+   .++.++....-.++. ....|+.++.    +..
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~-~~~~d~~~~~----~~~  104 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQ--EEMVN---YAWEKVNKLGLKNVE-VLKSEENKIP----LPD  104 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESC--HHHHH---HHHHHHHHHTCTTEE-EEECBTTBCS----SCS
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECC--HHHHH---HHHHHHHHcCCCcEE-EEecccccCC----CCC
Confidence            3567799999999999999999987544566655443  33332   244555443322333 3455777654    345


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC----------CCCcccHHHHHhh
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV----------PFSNWNIKELAIG  170 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----------PY~sWnIe~LAa~  170 (389)
                      ..||.|+.+..---.   ++           ...+++.+..+|+++|.+.++-....          .++...+..+.++
T Consensus       105 ~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (219)
T 3dh0_A          105 NTVDFIFMAFTFHEL---SE-----------PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILED  170 (219)
T ss_dssp             SCEEEEEEESCGGGC---SS-----------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHH
T ss_pred             CCeeEEEeehhhhhc---CC-----------HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHH
Confidence            789999998653322   11           25788899999999999998764321          1456788889999


Q ss_pred             CCcEEEEEeeCC
Q 016441          171 SSLSLIWCSEFK  182 (389)
Q Consensus       171 aGL~L~~~~~F~  182 (389)
                      +||..++...+.
T Consensus       171 ~Gf~~~~~~~~~  182 (219)
T 3dh0_A          171 AGIRVGRVVEVG  182 (219)
T ss_dssp             TTCEEEEEEEET
T ss_pred             CCCEEEEEEeeC
Confidence            999999887664

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.56  E-value=0.00091  Score=58.85  Aligned_cols=144  Identities=15%  Similarity=0.122  Sum_probs=90.9

Q ss_pred             CCCCCeEEEEecC-ChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEG-DFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEG-DFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ..++.+||=+|=| .=.++..|++..  +..++|+-.+.  ++.+   .++.|++...- .+.++ .-|++.+..   +.
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~--~~~~---~a~~~~~~~~~-~v~~~-~~d~~~~~~---~~  120 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDE--EFFE---YARRNIERNNS-NVRLV-KSNGGIIKG---VV  120 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCH--HHHH---HHHHHHHHTTC-CCEEE-ECSSCSSTT---TC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCH--HHHH---HHHHHHHHhCC-CcEEE-eCCchhhhh---cc
Confidence            3567899999999 999999999876  45777766653  2222   25566654432 34444 446654433   23


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHH------HHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCc
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLI------EMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSL  173 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~I------r~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL  173 (389)
                      ...||.|+.|.|-... +.++.....      ....+++..|++.+..+|+++|.+.+....+. ...-.+.++.++.|+
T Consensus       121 ~~~fD~I~~npp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~l~~~g~  198 (230)
T 3evz_A          121 EGTFDVIFSAPPYYDK-PLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-KLLNVIKERGIKLGY  198 (230)
T ss_dssp             CSCEEEEEECCCCC----------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-HHHHHHHHHHHHTTC
T ss_pred             cCceeEEEECCCCcCC-ccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-hHHHHHHHHHHHcCC
Confidence            4789999999886542 111100000      01224468899999999999999999765542 233466778888999


Q ss_pred             EEEEE
Q 016441          174 SLIWC  178 (389)
Q Consensus       174 ~L~~~  178 (389)
                      .+...
T Consensus       199 ~~~~~  203 (230)
T 3evz_A          199 SVKDI  203 (230)
T ss_dssp             EEEEE
T ss_pred             ceEEE
Confidence            76654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=97.51  E-value=0.002  Score=58.27  Aligned_cols=147  Identities=13%  Similarity=0.045  Sum_probs=97.3

Q ss_pred             ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC
Q 016441           18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD   97 (389)
Q Consensus        18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~   97 (389)
                      +....+..+||=||=|.=.++..|++.  ....++++-.+  ....+   .++++++...-.+-.-....|+.++.    
T Consensus        41 l~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----  109 (267)
T 3kkz_A           41 IDNLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFL--SGFID---IFNRNARQSGLQNRVTGIVGSMDDLP----  109 (267)
T ss_dssp             CCCCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEEECCTTSCC----
T ss_pred             cccCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCC--HHHHH---HHHHHHHHcCCCcCcEEEEcChhhCC----
Confidence            334567889999999999999999987  24467766554  22222   24444433221121334556777654    


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC---CCCC----Ccc--------
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT---TVPF----SNW--------  162 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~---g~PY----~sW--------  162 (389)
                      +....||.|+.+.+---.    +           ...+++.+..+|+|+|.+.++-..   ..+.    ..|        
T Consensus       110 ~~~~~fD~i~~~~~~~~~----~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (267)
T 3kkz_A          110 FRNEELDLIWSEGAIYNI----G-----------FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEID  174 (267)
T ss_dssp             CCTTCEEEEEESSCGGGT----C-----------HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCE
T ss_pred             CCCCCEEEEEEcCCceec----C-----------HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCC
Confidence            345789999998763321    1           246899999999999999887532   2111    234        


Q ss_pred             ---cHHHHHhhCCcEEEEEeeCCCCCC-CCCc
Q 016441          163 ---NIKELAIGSSLSLIWCSEFKIEDY-PAYN  190 (389)
Q Consensus       163 ---nIe~LAa~aGL~L~~~~~F~~~~Y-PGY~  190 (389)
                         .+.++.+++||.+++...+....| ..|.
T Consensus       175 ~~~~~~~~l~~aGf~~v~~~~~~~~~w~~~~~  206 (267)
T 3kkz_A          175 TIPNQVAKIHKAGYLPVATFILPENCWTDHYF  206 (267)
T ss_dssp             EHHHHHHHHHHTTEEEEEEEECCGGGTTTTTH
T ss_pred             CHHHHHHHHHHCCCEEEEEEECCHhHHHHHHH
Confidence               677788999999999998886666 5554

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=97.48  E-value=0.0019  Score=57.47  Aligned_cols=143  Identities=14%  Similarity=0.022  Sum_probs=94.3

Q ss_pred             ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC
Q 016441           18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD   97 (389)
Q Consensus        18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~   97 (389)
                      +....+..+||=||=|.=.++..|++..+  ..++++-.+  ....+   .++.++....-.+-.-....|++++.    
T Consensus        41 l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----  109 (257)
T 3f4k_A           41 INELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLF--PDFIE---IFNENAVKANCADRVKGITGSMDNLP----  109 (257)
T ss_dssp             SCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEEECCTTSCS----
T ss_pred             HhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECC--HHHHH---HHHHHHHHcCCCCceEEEECChhhCC----
Confidence            34556778999999999999999999864  366666544  22322   24444433221121334566776654    


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC---CCC---------------C
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT---TVP---------------F  159 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~---g~P---------------Y  159 (389)
                      +....||.|+.+..---.    +           ...+++.+..+|+|+|.+.|+-..   ..+               .
T Consensus       110 ~~~~~fD~v~~~~~l~~~----~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (257)
T 3f4k_A          110 FQNEELDLIWSEGAIYNI----G-----------FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEIS  174 (257)
T ss_dssp             SCTTCEEEEEEESCSCCC----C-----------HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEEEecChHhhc----C-----------HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCC
Confidence            345789999998543221    1           236889999999999999988532   111               1


Q ss_pred             CcccHHHHHhhCCcEEEEEeeCCCCCC
Q 016441          160 SNWNIKELAIGSSLSLIWCSEFKIEDY  186 (389)
Q Consensus       160 ~sWnIe~LAa~aGL~L~~~~~F~~~~Y  186 (389)
                      +.-.+.++.+++||..++...+....|
T Consensus       175 ~~~~~~~~l~~aGf~~v~~~~~~~~~w  201 (257)
T 3f4k_A          175 VIPTCIDKMERAGYTPTAHFILPENCW  201 (257)
T ss_dssp             BHHHHHHHHHHTTEEEEEEEECCGGGT
T ss_pred             CHHHHHHHHHHCCCeEEEEEECChhhH
Confidence            222456788899999999988887666

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.43  E-value=0.00097  Score=58.84  Aligned_cols=135  Identities=16%  Similarity=0.099  Sum_probs=86.2

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..++.+||=+|=|.=.++..|++.++....+++.  |...+..+   .+.+|.+..  .++.++ ..|+.+......+ .
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~v--D~s~~~~~---~~~~~~~~~--~~v~~~-~~d~~~~~~~~~~-~  141 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGI--EFSPRVLR---ELVPIVEER--RNIVPI-LGDATKPEEYRAL-V  141 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEE--ESCHHHHH---HHHHHHSSC--TTEEEE-ECCTTCGGGGTTT-C
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEE--ECCHHHHH---HHHHHHhcc--CCCEEE-EccCCCcchhhcc-c
Confidence            4567899999999999999999987644567665  53333322   234444332  345544 4477764211112 2


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC-----C---CCcccHHHHHhhCC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV-----P---FSNWNIKELAIGSS  172 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-----P---Y~sWnIe~LAa~aG  172 (389)
                      ..||.|+.+.|+..                ....++..+..+|+++|.+.++.+...     |   +....+.++ .++ 
T Consensus       142 ~~~D~v~~~~~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-  203 (227)
T 1g8a_A          142 PKVDVIFEDVAQPT----------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-  203 (227)
T ss_dssp             CCEEEEEECCCSTT----------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-
T ss_pred             CCceEEEECCCCHh----------------HHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-
Confidence            47999999988221                133568889999999999999865321     1   112456667 556 


Q ss_pred             cEEEEEeeCC
Q 016441          173 LSLIWCSEFK  182 (389)
Q Consensus       173 L~L~~~~~F~  182 (389)
                      |.+++...+.
T Consensus       204 f~~~~~~~~~  213 (227)
T 1g8a_A          204 FEVIERLNLE  213 (227)
T ss_dssp             SEEEEEEECT
T ss_pred             ceeeeEeccC
Confidence            9888877653

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.38  E-value=0.0011  Score=60.29  Aligned_cols=147  Identities=16%  Similarity=0.179  Sum_probs=93.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=+|=|.=.+++.|++..  +..|+|.-.+  +++.+   .|+.|++...-.+-..+...|+.++...  +...+
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~--~~~v~gvDi~--~~~~~---~a~~n~~~~~~~~~v~~~~~D~~~~~~~--~~~~~  119 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQ--ERLAD---MAKRSVAYNQLEDQIEIIEYDLKKITDL--IPKER  119 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTC--CCEEEEECCS--HHHHH---HHHHHHHHTTCTTTEEEECSCGGGGGGT--SCTTC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhc--CCcEEEEECC--HHHHH---HHHHHHHHCCCcccEEEEECcHHHhhhh--hccCC
Confidence            67899999999999999999874  2367666554  33332   3666766443222234456688776532  34578


Q ss_pred             cceEEEcCCCCCC--CCCc--cchHHHHHh--HHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEE
Q 016441          103 FDRIIFNFPHAGF--YGKE--DNHLLIEMH--RSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLI  176 (389)
Q Consensus       103 FDrIIFNFPH~G~--~gkE--D~~r~Ir~n--r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~  176 (389)
                      ||.||.|-|....  .+..  +..+.+..|  ...+..|++.|..+|+++|.+.+.+.   |...-.+..++++.|+...
T Consensus       120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~~l~~~~~~~~  196 (259)
T 3lpm_A          120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---PERLLDIIDIMRKYRLEPK  196 (259)
T ss_dssp             EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---TTTHHHHHHHHHHTTEEEE
T ss_pred             ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---HHHHHHHHHHHHHCCCceE
Confidence            9999999986432  1111  111122212  24567899999999999999999653   3445567788888999888


Q ss_pred             EEeeC
Q 016441          177 WCSEF  181 (389)
Q Consensus       177 ~~~~F  181 (389)
                      +..+.
T Consensus       197 ~~~~v  201 (259)
T 3lpm_A          197 RIQFV  201 (259)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.38  E-value=0.00063  Score=60.57  Aligned_cols=148  Identities=20%  Similarity=0.291  Sum_probs=93.1

Q ss_pred             ccccccCCCC-CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCC
Q 016441           14 EEKWIKHYSS-NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTM   92 (389)
Q Consensus        14 ~~K~~~~Yss-~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL   92 (389)
                      ..+|...|.. ..+||=||=|.=.++..||+.+ ...+++|.-.+  .++.+   .|..|++...-.++.++ ..|+.++
T Consensus        28 ~~~~~~~f~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s--~~~l~---~a~~~~~~~~~~nv~~~-~~d~~~l  100 (213)
T 2fca_A           28 KGKWNTVFGNDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELF--KSVIV---TAVQKVKDSEAQNVKLL-NIDADTL  100 (213)
T ss_dssp             TTCHHHHHTSCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSC--HHHHH---HHHHHHHHSCCSSEEEE-CCCGGGH
T ss_pred             CCCHHHHcCCCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEec--hHHHH---HHHHHHHHcCCCCEEEE-eCCHHHH
Confidence            3466666654 6689999999999999999886 34677776544  33333   25556554322234444 4588775


Q ss_pred             CCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCC
Q 016441           93 ELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSS  172 (389)
Q Consensus        93 ~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aG  172 (389)
                      ...  +....||.|+.|||-.-.+...      ...+.....|++.+..+|+++|.++++... ..|..|-++.+. ++|
T Consensus       101 ~~~--~~~~~~d~v~~~~~~p~~~~~~------~~~rl~~~~~l~~~~~~LkpgG~l~~~td~-~~~~~~~~~~~~-~~g  170 (213)
T 2fca_A          101 TDV--FEPGEVKRVYLNFSDPWPKKRH------EKRRLTYSHFLKKYEEVMGKGGSIHFKTDN-RGLFEYSLKSFS-EYG  170 (213)
T ss_dssp             HHH--CCTTSCCEEEEESCCCCCSGGG------GGGSTTSHHHHHHHHHHHTTSCEEEEEESC-HHHHHHHHHHHH-HHT
T ss_pred             Hhh--cCcCCcCEEEEECCCCCcCccc------cccccCcHHHHHHHHHHcCCCCEEEEEeCC-HHHHHHHHHHHH-HCC
Confidence            321  3346799999999854321110      012222478999999999999999987532 234555555554 457


Q ss_pred             cEEEEE
Q 016441          173 LSLIWC  178 (389)
Q Consensus       173 L~L~~~  178 (389)
                      +.+...
T Consensus       171 ~~~~~~  176 (213)
T 2fca_A          171 LLLTYV  176 (213)
T ss_dssp             CEEEEE
T ss_pred             Cccccc
Confidence            876653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.37  E-value=0.0029  Score=61.37  Aligned_cols=130  Identities=18%  Similarity=0.142  Sum_probs=83.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCC-CCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATT-MELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATk-L~~~~~Lk~~  101 (389)
                      +..+||=|| |+=.++..|++.. ....+++  .|-.+++.+   -|++|++.+.-..+.++.+ |+.+ |...   ...
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~--vDi~~~~l~---~a~~~~~~~g~~~v~~~~~-D~~~~l~~~---~~~  240 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSG-LPKRIAV--LDIDERLTK---FIEKAANEIGYEDIEIFTF-DLRKPLPDY---ALH  240 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHT-CCSEEEE--ECSCHHHHH---HHHHHHHHHTCCCEEEECC-CTTSCCCTT---TSS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhC-CCCEEEE--EECCHHHHH---HHHHHHHHcCCCCEEEEEC-hhhhhchhh---ccC
Confidence            467999999 9999999998763 2245554  553233332   3677776653113555444 8877 5321   135


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeE-EEEecCCCCCCc---ccHHHHHh-hCCcEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEV-HVSHKTTVPFSN---WNIKELAI-GSSLSLI  176 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeI-HVTLk~g~PY~s---WnIe~LAa-~aGL~L~  176 (389)
                      .||.||.|-|....              . +..|+..|..+|+++|.+ .++... .+-+.   +.+.++.+ +.|+.+.
T Consensus       241 ~fD~Vi~~~p~~~~--------------~-~~~~l~~~~~~LkpgG~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~  304 (373)
T 2qm3_A          241 KFDTFITDPPETLE--------------A-IRAFVGRGIATLKGPRCAGYFGITR-RESSLDKWREIQKLLLNEFNVVIT  304 (373)
T ss_dssp             CBSEEEECCCSSHH--------------H-HHHHHHHHHHTBCSTTCEEEEEECT-TTCCHHHHHHHHHHHHHTSCCEEE
T ss_pred             CccEEEECCCCchH--------------H-HHHHHHHHHHHcccCCeEEEEEEec-CcCCHHHHHHHHHHHHHhcCcchh
Confidence            79999999884321              1 378999999999999954 555554 12233   56677777 8888776


Q ss_pred             EEe
Q 016441          177 WCS  179 (389)
Q Consensus       177 ~~~  179 (389)
                      ...
T Consensus       305 ~~~  307 (373)
T 2qm3_A          305 DII  307 (373)
T ss_dssp             EEE
T ss_pred             hhh
Confidence            543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.36  E-value=0.0029  Score=57.56  Aligned_cols=129  Identities=16%  Similarity=0.157  Sum_probs=86.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC----CEEEeccccCCCCCCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG----TCILHGVDATTMELHPD   97 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G----v~VlfgVDATkL~~~~~   97 (389)
                      .+..+||=||=|.=.++..|++.++  ..+++...+ . +..+   .+..++   ++.|    +.+ ...|+.++.    
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s-~-~~~~---~a~~~~---~~~~~~~~~~~-~~~d~~~~~----  127 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLS-K-NQAN---HVQQLV---ANSENLRSKRV-LLAGWEQFD----  127 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESC-H-HHHH---HHHHHH---HTCCCCSCEEE-EESCGGGCC----
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECC-H-HHHH---HHHHHH---HhcCCCCCeEE-EECChhhCC----
Confidence            4677999999999999999998775  366666554 2 2222   133333   3333    333 344776543    


Q ss_pred             cCCCCcceEEEcC--CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC----------CC-------
Q 016441           98 LRTRKFDRIIFNF--PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT----------VP-------  158 (389)
Q Consensus        98 Lk~~~FDrIIFNF--PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g----------~P-------  158 (389)
                         ..||.|+.+.  -|++.   ++           ...+|+.+..+|+|+|.+.|+-...          .|       
T Consensus       128 ---~~fD~v~~~~~l~~~~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (287)
T 1kpg_A          128 ---EPVDRIVSIGAFEHFGH---ER-----------YDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFAR  190 (287)
T ss_dssp             ---CCCSEEEEESCGGGTCT---TT-----------HHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHH
T ss_pred             ---CCeeEEEEeCchhhcCh---HH-----------HHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccc
Confidence               6799999884  46642   11           4578899999999999998875431          11       


Q ss_pred             ---------------CCcccHHHHHhhCCcEEEEEeeCC
Q 016441          159 ---------------FSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       159 ---------------Y~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                                     ++.-.+.++.+++||.+++...+.
T Consensus       191 ~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~  229 (287)
T 1kpg_A          191 FLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQ  229 (287)
T ss_dssp             HHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             hhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence                           133456778889999999887654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=97.34  E-value=0.00061  Score=59.16  Aligned_cols=139  Identities=14%  Similarity=0.098  Sum_probs=93.5

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      ..+....+..+||=||=|.=.++..|++.   +..+++.-.+  .++.+.   ++.++      ++.+. ..|+.++.  
T Consensus        36 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s--~~~~~~---a~~~~------~~~~~-~~d~~~~~--   98 (211)
T 3e23_A           36 KFLGELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGS--PELAAE---ASRRL------GRPVR-TMLFHQLD--   98 (211)
T ss_dssp             HHHTTSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESC--HHHHHH---HHHHH------TSCCE-ECCGGGCC--
T ss_pred             HHHHhcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCC--HHHHHH---HHHhc------CCceE-EeeeccCC--
Confidence            34555667889999999999999999976   3456655443  333321   33333      44433 35666665  


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC------------CCccc
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP------------FSNWN  163 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P------------Y~sWn  163 (389)
                         ....||.|+.++.-.-.            ..+-+..+++.+..+|+++|.+.++...+.+            ++.-.
T Consensus        99 ---~~~~fD~v~~~~~l~~~------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (211)
T 3e23_A           99 ---AIDAYDAVWAHACLLHV------------PRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEW  163 (211)
T ss_dssp             ---CCSCEEEEEECSCGGGS------------CHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHH
T ss_pred             ---CCCcEEEEEecCchhhc------------CHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHH
Confidence               34789999998632211            1123567899999999999999999876542            34456


Q ss_pred             HHHHHhhCC-cEEEEEeeCCCCCC
Q 016441          164 IKELAIGSS-LSLIWCSEFKIEDY  186 (389)
Q Consensus       164 Ie~LAa~aG-L~L~~~~~F~~~~Y  186 (389)
                      +.++.+++| |.+++........|
T Consensus       164 ~~~~l~~aG~f~~~~~~~~~~~~~  187 (211)
T 3e23_A          164 LRARYAEAGTWASVAVESSEGKGF  187 (211)
T ss_dssp             HHHHHHHHCCCSEEEEEEEEEECT
T ss_pred             HHHHHHhCCCcEEEEEEeccCCCC
Confidence            788899999 99998776554433

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.34  E-value=0.0035  Score=57.85  Aligned_cols=141  Identities=12%  Similarity=0.042  Sum_probs=90.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++.++  ..+++.-++ .+.+ +   .+++++....-.+-.-+...|+.++       ..
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s-~~~~-~---~a~~~~~~~~~~~~v~~~~~d~~~~-------~~  136 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLS-ENQY-A---HDKAMFDEVDSPRRKEVRIQGWEEF-------DE  136 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECC-HHHH-H---HHHHHHHHSCCSSCEEEEECCGGGC-------CC
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECC-HHHH-H---HHHHHHHhcCCCCceEEEECCHHHc-------CC
Confidence            5678999999999999999999885  567766554 2222 2   2444443321111122344577765       46


Q ss_pred             CcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC---------------------
Q 016441          102 KFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP---------------------  158 (389)
Q Consensus       102 ~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P---------------------  158 (389)
                      .||.|+.+..  |+...  ++.     ...+-+..+|+.+..+|+|+|.+.|.-.....                     
T Consensus       137 ~fD~v~~~~~~~~~~d~--~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (302)
T 3hem_A          137 PVDRIVSLGAFEHFADG--AGD-----AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKF  209 (302)
T ss_dssp             CCSEEEEESCGGGTTCC--SSC-----CCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHH
T ss_pred             CccEEEEcchHHhcCcc--ccc-----cchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHH
Confidence            7999999754  55211  000     00122568999999999999999887653211                     


Q ss_pred             -----------CCcccHHHHHhhCCcEEEEEeeCCC
Q 016441          159 -----------FSNWNIKELAIGSSLSLIWCSEFKI  183 (389)
Q Consensus       159 -----------Y~sWnIe~LAa~aGL~L~~~~~F~~  183 (389)
                                 .+.-.+.++++++||.+++...+..
T Consensus       210 ~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~  245 (302)
T 3hem_A          210 ILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGA  245 (302)
T ss_dssp             HHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred             HHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence                       1112567788899999998877654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=97.30  E-value=0.0019  Score=55.48  Aligned_cols=138  Identities=14%  Similarity=0.123  Sum_probs=87.1

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      +++....++ +||=||=|.=.++..|++.   +.++++.-.+  +++.+   .++.++.... .++.+ ...|+.++.  
T Consensus        23 ~~~~~~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s--~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~--   89 (202)
T 2kw5_A           23 SVANQIPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQS--SVGLA---KAKQLAQEKG-VKITT-VQSNLADFD--   89 (202)
T ss_dssp             HHHHHSCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSS--HHHHH---HHHHHHHHHT-CCEEE-ECCBTTTBS--
T ss_pred             HHHHhCCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECC--HHHHH---HHHHHHHhcC-CceEE-EEcChhhcC--
Confidence            344455666 9999999999999999875   3466665443  33332   2444443321 13333 345777653  


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC--------CC---CCccc-
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT--------VP---FSNWN-  163 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g--------~P---Y~sWn-  163 (389)
                        +....||.|+.++.|...              .-...+++.+..+|+++|.+.++....        .|   ...+. 
T Consensus        90 --~~~~~fD~v~~~~~~~~~--------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (202)
T 2kw5_A           90 --IVADAWEGIVSIFCHLPS--------------SLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKL  153 (202)
T ss_dssp             --CCTTTCSEEEEECCCCCH--------------HHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCH
T ss_pred             --CCcCCccEEEEEhhcCCH--------------HHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCH
Confidence              345789999999887631              124578889999999999999986432        22   12333 


Q ss_pred             --HHHHHhhCCcEEEEEeeCCCC
Q 016441          164 --IKELAIGSSLSLIWCSEFKIE  184 (389)
Q Consensus       164 --Ie~LAa~aGL~L~~~~~F~~~  184 (389)
                        +.++.+  ||.++....+...
T Consensus       154 ~~l~~~l~--Gf~v~~~~~~~~~  174 (202)
T 2kw5_A          154 ETLQSELP--SLNWLIANNLERN  174 (202)
T ss_dssp             HHHHHHCS--SSCEEEEEEEEEE
T ss_pred             HHHHHHhc--CceEEEEEEEEee
Confidence              344444  8888877666544

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.27  E-value=0.00049  Score=65.26  Aligned_cols=144  Identities=11%  Similarity=0.197  Sum_probs=89.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH----hCCCEEEeccccCCCCCCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK----KLGTCILHGVDATTMELHPD   97 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr----~~Gv~VlfgVDATkL~~~~~   97 (389)
                      .+..+||.||=|+=.++..|++.. ....|++.-.|.  ++.+   -+++++..+.    ...++++. -|+.++...  
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~--~~i~---~a~~~~~~~~~~~~~~~v~~~~-~D~~~~~~~--  164 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDG--EVME---QSKQHFPQISRSLADPRATVRV-GDGLAFVRQ--  164 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCH--HHHH---HHHHHCHHHHGGGGCTTEEEEE-SCHHHHHHS--
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCH--HHHH---HHHHHhHHhhcccCCCcEEEEE-CcHHHHHHh--
Confidence            456799999999999999999764 345777776663  2222   1444554432    23355544 366654211  


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHH-HHHHHhhHhcccCCCeEEEEecCCCCC----CcccHHHHHhhCC
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLV-RDFFRNSSGMLRDGGEVHVSHKTTVPF----SNWNIKELAIGSS  172 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL-~~FF~SA~~lL~~~GeIHVTLk~g~PY----~sWnIe~LAa~aG  172 (389)
                      ....+||.||.|.|..-.  .         ...|. ..||+.+..+|+++|.+.+..-  .|+    ..+.+.+..+++|
T Consensus       165 ~~~~~fDvIi~d~~~~~~--~---------~~~l~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~~~~~l~~~G  231 (304)
T 3bwc_A          165 TPDNTYDVVIIDTTDPAG--P---------ASKLFGEAFYKDVLRILKPDGICCNQGE--SIWLDLELIEKMSRFIRETG  231 (304)
T ss_dssp             SCTTCEEEEEEECC--------------------CCHHHHHHHHHHEEEEEEEEEEEC--CTTTCHHHHHHHHHHHHHHT
T ss_pred             ccCCceeEEEECCCCccc--c---------chhhhHHHHHHHHHHhcCCCcEEEEecC--CcccchHHHHHHHHHHHhCC
Confidence            124679999999876431  1         11222 6899999999999999988743  232    3467777788889


Q ss_pred             cEEEEEeeCCCCCCC
Q 016441          173 LSLIWCSEFKIEDYP  187 (389)
Q Consensus       173 L~L~~~~~F~~~~YP  187 (389)
                      |..++........||
T Consensus       232 F~~v~~~~~~vP~yp  246 (304)
T 3bwc_A          232 FASVQYALMHVPTYP  246 (304)
T ss_dssp             CSEEEEEECCCTTST
T ss_pred             CCcEEEEEeeccccc
Confidence            877766554433343

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.25  E-value=0.002  Score=57.29  Aligned_cols=130  Identities=14%  Similarity=0.146  Sum_probs=87.8

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEeccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-KKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-r~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ..+..+||-+|=|.=.++..|++.++....+++.-.+  ++..+   .+++|++.. ....+.+ ...|+.++.    +.
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~--~~~~~---~a~~~~~~~~g~~~v~~-~~~d~~~~~----~~  163 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEAR--PHHLA---QAERNVRAFWQVENVRF-HLGKLEEAE----LE  163 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESC--HHHHH---HHHHHHHHHCCCCCEEE-EESCGGGCC----CC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHhcCCCCEEE-EECchhhcC----CC
Confidence            4567899999999999999999987655677766543  33332   255666544 3122343 345777652    33


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      ...||.|+.|.|..                   ..+++.+..+|+++|.+.+......  ..+.+.+..+++|+..++..
T Consensus       164 ~~~~D~v~~~~~~~-------------------~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~gf~~~~~~  222 (258)
T 2pwy_A          164 EAAYDGVALDLMEP-------------------WKVLEKAALALKPDRFLVAYLPNIT--QVLELVRAAEAHPFRLERVL  222 (258)
T ss_dssp             TTCEEEEEEESSCG-------------------GGGHHHHHHHEEEEEEEEEEESCHH--HHHHHHHHHTTTTEEEEEEE
T ss_pred             CCCcCEEEECCcCH-------------------HHHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHHCCCceEEEE
Confidence            46799999987643                   1578889999999999998775432  23455556667898877665


Q ss_pred             eC
Q 016441          180 EF  181 (389)
Q Consensus       180 ~F  181 (389)
                      ..
T Consensus       223 ~~  224 (258)
T 2pwy_A          223 EV  224 (258)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.25  E-value=0.0014  Score=60.27  Aligned_cols=140  Identities=19%  Similarity=0.115  Sum_probs=90.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++.+|++.++ ..+++|+-.+  +...+   .++.|++.+.-..+.++ .-|+.+.     +...
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s--~~~l~---~a~~n~~~~~~~~v~~~-~~d~~~~-----~~~~  175 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERP-DCEIIAVDRM--PDAVS---LAQRNAQHLAIKNIHIL-QSDWFSA-----LAGQ  175 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSS--HHHHH---HHHHHHHHHTCCSEEEE-CCSTTGG-----GTTC
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHHcCCCceEEE-Ecchhhh-----cccC
Confidence            4567999999999999999998763 4567766444  33332   36677766542234443 3466542     2246


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHh------------HHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMH------------RSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI  169 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~n------------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa  169 (389)
                      .||.|+.|.|-.+. +...-...+..+            -..+..++..+..+|+++|.+.+....   .....+.++.+
T Consensus       176 ~fD~Iv~npPy~~~-~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l~  251 (276)
T 2b3t_A          176 QFAMIVSNPPYIDE-QDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---QQGEAVRQAFI  251 (276)
T ss_dssp             CEEEEEECCCCBCT-TCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS---SCHHHHHHHHH
T ss_pred             CccEEEECCCCCCc-cccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---hHHHHHHHHHH
Confidence            79999999998874 111000001111            145688999999999999999987532   34456778888


Q ss_pred             hCCcEEEE
Q 016441          170 GSSLSLIW  177 (389)
Q Consensus       170 ~aGL~L~~  177 (389)
                      ++|+..++
T Consensus       252 ~~Gf~~v~  259 (276)
T 2b3t_A          252 LAGYHDVE  259 (276)
T ss_dssp             HTTCTTCC
T ss_pred             HCCCcEEE
Confidence            88886544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.25  E-value=0.00082  Score=62.58  Aligned_cols=127  Identities=13%  Similarity=0.075  Sum_probs=85.6

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..++.+||=+|=|.=.||..+|+...  ..++|  .|...+..+   .++.|++...-.+..-...-|+.++..     .
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~--vD~s~~~~~---~a~~n~~~n~~~~~v~~~~~D~~~~~~-----~  190 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGK--AKVIA--IEKDPYTFK---FLVENIHLNKVEDRMSAYNMDNRDFPG-----E  190 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTC--CEEEE--ECCCHHHHH---HHHHHHHHTTCTTTEEEECSCTTTCCC-----C
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCC--CEEEE--EECCHHHHH---HHHHHHHHcCCCceEEEEECCHHHhcc-----c
Confidence            34588999999888889999988642  24555  453333333   366666543222223356678887654     5


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC--C--CCcccHHHHHhhCCcEEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV--P--FSNWNIKELAIGSSLSLI  176 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~--P--Y~sWnIe~LAa~aGL~L~  176 (389)
                      ..||.|+.|.|...                  ..|+..+..+|+++|.+++..+...  .  -..-.+.+.++++|+.+.
T Consensus       191 ~~fD~Vi~~~p~~~------------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~  252 (278)
T 2frn_A          191 NIADRILMGYVVRT------------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE  252 (278)
T ss_dssp             SCEEEEEECCCSSG------------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred             CCccEEEECCchhH------------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeE
Confidence            78999999998321                  3577788899999999999877531  1  122456778889999876


Q ss_pred             E
Q 016441          177 W  177 (389)
Q Consensus       177 ~  177 (389)
                      .
T Consensus       253 ~  253 (278)
T 2frn_A          253 K  253 (278)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.23  E-value=0.00053  Score=56.13  Aligned_cols=120  Identities=16%  Similarity=0.114  Sum_probs=80.4

Q ss_pred             ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC--
Q 016441           18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH--   95 (389)
Q Consensus        18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~--   95 (389)
                      ..+..+..+||=||-|.=.++..|++.++....+++.-.+.   +.+ .            .++.+. ..|+.++...  
T Consensus        17 ~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~-~------------~~~~~~-~~d~~~~~~~~~   79 (180)
T 1ej0_A           17 DKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDP-I------------VGVDFL-QGDFRDELVMKA   79 (180)
T ss_dssp             HCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCC-C------------TTEEEE-ESCTTSHHHHHH
T ss_pred             hCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---ccc-c------------CcEEEE-Ecccccchhhhh
Confidence            33456778999999999999999999876556888877665   111 0            334443 4477664200  


Q ss_pred             --CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441           96 --PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus        96 --~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                        ..+....||.|+.|.|--.. +..  ......+..+...+++.+..+|+++|.+.++.....
T Consensus        80 ~~~~~~~~~~D~i~~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           80 LLERVGDSKVQVVMSDMAPNMS-GTP--AVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             HHHHHTTCCEEEEEECCCCCCC-SCH--HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             hhccCCCCceeEEEECCCcccc-CCC--ccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence              00334689999999884332 111  112234456678999999999999999999877654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=97.22  E-value=0.0047  Score=54.23  Aligned_cols=132  Identities=14%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+..+||=||=|.=.++..|++.   +..+++.-.+  .++.+.   +..+.   ...++. ....|+.++.    +..
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s--~~~~~~---a~~~~---~~~~~~-~~~~d~~~~~----~~~  114 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDIS--EVMIQK---GKERG---EGPDLS-FIKGDLSSLP----FEN  114 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESC--HHHHHH---HHTTT---CBTTEE-EEECBTTBCS----SCT
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECC--HHHHHH---HHhhc---ccCCce-EEEcchhcCC----CCC
Confidence            346789999999999999999986   3467665443  222221   22221   122333 3456777753    345


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC-------------------CCCc
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV-------------------PFSN  161 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-------------------PY~s  161 (389)
                      ..||.|+.+...--.   .+           ...+++.+..+|+++|.+.|+.....                   .++.
T Consensus       115 ~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (242)
T 3l8d_A          115 EQFEAIMAINSLEWT---EE-----------PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMP  180 (242)
T ss_dssp             TCEEEEEEESCTTSS---SC-----------HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCH
T ss_pred             CCccEEEEcChHhhc---cC-----------HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCH
Confidence            789999987543321   12           23678899999999999999874321                   1455


Q ss_pred             ccHHHHHhhCCcEEEEEeeCC
Q 016441          162 WNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       162 WnIe~LAa~aGL~L~~~~~F~  182 (389)
                      +.++++.+++||.+++...+-
T Consensus       181 ~~~~~~l~~~Gf~~~~~~~~~  201 (242)
T 3l8d_A          181 WEFEQLVKEQGFKVVDGIGVY  201 (242)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCEEEEeeccc
Confidence            679999999999999987663

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.22  E-value=0.0027  Score=63.42  Aligned_cols=148  Identities=15%  Similarity=0.145  Sum_probs=97.3

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      -.++.+||=+|=|.=.++..|++..+....|+|.-.+.  ...+   .+..|++.+.-.++.+ ...|++++...  +..
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~--~~l~---~~~~~~~~~g~~~v~~-~~~D~~~~~~~--~~~  328 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDK--MRMK---RLKDFVKRMGIKIVKP-LVKDARKAPEI--IGE  328 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCH--HHHH---HHHHHHHHTTCCSEEE-ECSCTTCCSSS--SCS
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCH--HHHH---HHHHHHHHcCCCcEEE-EEcChhhcchh--hcc
Confidence            35678999999999999999998875435677765542  2222   3556665443223333 45688876532  344


Q ss_pred             CCcceEEEcCCCCCCCCC----cc-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcc-cHHH-HHh
Q 016441          101 RKFDRIIFNFPHAGFYGK----ED-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW-NIKE-LAI  169 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gk----ED-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW-nIe~-LAa  169 (389)
                      ..||+|+.|-|..|. |.    .|     ....+.....+-..++..+..+|++||.+.++-|+-.|-..- .|.. +.+
T Consensus       329 ~~fD~Vl~D~Pcsg~-g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~  407 (450)
T 2yxl_A          329 EVADKVLLDAPCTSS-GTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV  407 (450)
T ss_dssp             SCEEEEEEECCCCCG-GGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             CCCCEEEEcCCCCCC-eeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence            679999999999884 21    11     011233444555788999999999999999999987775544 4445 444


Q ss_pred             hCCcEEEE
Q 016441          170 GSSLSLIW  177 (389)
Q Consensus       170 ~aGL~L~~  177 (389)
                      ..++.+..
T Consensus       408 ~~~~~~~~  415 (450)
T 2yxl_A          408 HPEFKLVP  415 (450)
T ss_dssp             CSSCEECC
T ss_pred             CCCCEEee
Confidence            45777654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.17  E-value=0.0055  Score=53.11  Aligned_cols=108  Identities=17%  Similarity=0.223  Sum_probs=72.4

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ......+||=||=|.=.++..|++..   ..++++-.+  +++.+   .++.+++... ..+.++. .|+.++.    +.
T Consensus        35 ~~~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s--~~~~~---~a~~~~~~~~-~~~~~~~-~d~~~~~----~~  100 (227)
T 1ve3_A           35 YMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDIS--EDMIR---KAREYAKSRE-SNVEFIV-GDARKLS----FE  100 (227)
T ss_dssp             SCCSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESC--HHHHH---HHHHHHHHTT-CCCEEEE-CCTTSCC----SC
T ss_pred             hcCCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECC--HHHHH---HHHHHHHhcC-CCceEEE-CchhcCC----CC
Confidence            34457899999999999999998863   266666554  33333   2445544332 3455543 4776653    34


Q ss_pred             CCCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441          100 TRKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus       100 ~~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      ...||.|+.+.|  +...              .-...+++.+..+|+++|.+.+...+
T Consensus       101 ~~~~D~v~~~~~~~~~~~--------------~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          101 DKTFDYVIFIDSIVHFEP--------------LELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             TTCEEEEEEESCGGGCCH--------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEcCchHhCCH--------------HHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            568999999988  4321              11357889999999999999887653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.16  E-value=0.0019  Score=64.20  Aligned_cols=143  Identities=16%  Similarity=0.088  Sum_probs=93.9

Q ss_pred             cccccCCCC-CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCC
Q 016441           15 EKWIKHYSS-NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTME   93 (389)
Q Consensus        15 ~K~~~~Yss-~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~   93 (389)
                      .+++..+.+ +.+||=+|=|.=.||+.+|+. |  ..  .|+.|..+...+   .+++|++... ....+. .-|+.++-
T Consensus       205 r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~-g--a~--V~avDis~~al~---~a~~n~~~ng-~~~~~~-~~D~~~~l  274 (393)
T 4dmg_A          205 RRLFEAMVRPGERVLDVYSYVGGFALRAARK-G--AY--ALAVDKDLEALG---VLDQAALRLG-LRVDIR-HGEALPTL  274 (393)
T ss_dssp             HHHHHTTCCTTCEEEEESCTTTHHHHHHHHT-T--CE--EEEEESCHHHHH---HHHHHHHHHT-CCCEEE-ESCHHHHH
T ss_pred             HHHHHHHhcCCCeEEEcccchhHHHHHHHHc-C--Ce--EEEEECCHHHHH---HHHHHHHHhC-CCCcEE-EccHHHHH
Confidence            456666766 889999999999999999885 3  34  455664444433   3677776442 223444 55666532


Q ss_pred             CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCC-cc--cHHHHHhh
Q 016441           94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFS-NW--NIKELAIG  170 (389)
Q Consensus        94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~-sW--nIe~LAa~  170 (389)
                      ..  +... ||.||.|-|.... ++.    .+..-......++..|..+|+++|.+.+..|...+.. .|  .|.+.+.+
T Consensus       275 ~~--~~~~-fD~Ii~dpP~f~~-~~~----~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~  346 (393)
T 4dmg_A          275 RG--LEGP-FHHVLLDPPTLVK-RPE----ELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAAD  346 (393)
T ss_dssp             HT--CCCC-EEEEEECCCCCCS-SGG----GHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HH--hcCC-CCEEEECCCcCCC-CHH----HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            11  1334 9999999998663 333    3444555667888999999999999998888876532 22  34456666


Q ss_pred             CCcEE
Q 016441          171 SSLSL  175 (389)
Q Consensus       171 aGL~L  175 (389)
                      +|..+
T Consensus       347 ~g~~~  351 (393)
T 4dmg_A          347 LGRRL  351 (393)
T ss_dssp             HTCCE
T ss_pred             hCCeE
Confidence            66443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.14  E-value=0.0051  Score=52.86  Aligned_cols=128  Identities=13%  Similarity=0.117  Sum_probs=88.6

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF  103 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F  103 (389)
                      ..+||=||=|.=.++..|++.   +..+++.-.+  .++.+.   +..+     ..++.++ ..|+.++.    +....|
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s--~~~~~~---a~~~-----~~~~~~~-~~d~~~~~----~~~~~f  103 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPA--TRLVEL---ARQT-----HPSVTFH-HGTITDLS----DSPKRW  103 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT---TCCEEEECCC--HHHHHH---HHHH-----CTTSEEE-CCCGGGGG----GSCCCE
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCC--HHHHHH---HHHh-----CCCCeEE-eCcccccc----cCCCCe
Confidence            789999999999999999986   3467665443  333221   2222     1244443 45776653    345789


Q ss_pred             ceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-------------CCcccHHHHH
Q 016441          104 DRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-------------FSNWNIKELA  168 (389)
Q Consensus       104 DrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-------------Y~sWnIe~LA  168 (389)
                      |.|+.++.  |+.   .++           +..+++.+..+|+++|.+.++......             ++.-.+.++.
T Consensus       104 D~v~~~~~l~~~~---~~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  169 (203)
T 3h2b_A          104 AGLLAWYSLIHMG---PGE-----------LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQAL  169 (203)
T ss_dssp             EEEEEESSSTTCC---TTT-----------HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHH
T ss_pred             EEEEehhhHhcCC---HHH-----------HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHH
Confidence            99999653  332   122           457888999999999999999876542             3445677789


Q ss_pred             hhCCcEEEEEeeCCC
Q 016441          169 IGSSLSLIWCSEFKI  183 (389)
Q Consensus       169 a~aGL~L~~~~~F~~  183 (389)
                      +++||.+++...+..
T Consensus       170 ~~~Gf~~~~~~~~~~  184 (203)
T 3h2b_A          170 ETAGFQVTSSHWDPR  184 (203)
T ss_dssp             HHTTEEEEEEEECTT
T ss_pred             HHCCCcEEEEEecCC
Confidence            999999999887765

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.14  E-value=0.0048  Score=57.47  Aligned_cols=147  Identities=12%  Similarity=0.084  Sum_probs=96.3

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      +++....+..+||=||=|.=.++..|++.++  ..+++.-.+  ++..+   .++++++...-.+-.-+..-|+.++.  
T Consensus       110 ~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~--  180 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLS--AAQAD---FGNRRARELRIDDHVRSRVCNMLDTP--  180 (312)
T ss_dssp             TTSCCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEEECCTTSCC--
T ss_pred             HHhccCCCCCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCC--HHHHH---HHHHHHHHcCCCCceEEEECChhcCC--
Confidence            3444456788999999999999999998873  456655443  33332   25555544321112334455777654  


Q ss_pred             CCcCCCCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC-CCC--------------
Q 016441           96 PDLRTRKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT-TVP--------------  158 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~-g~P--------------  158 (389)
                        +....||.|+.+.-  |++                 ...+|+.+..+|+|||.+.++-.. ...              
T Consensus       181 --~~~~~fD~V~~~~~l~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  241 (312)
T 3vc1_A          181 --FDKGAVTASWNNESTMYVD-----------------LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAH  241 (312)
T ss_dssp             --CCTTCEEEEEEESCGGGSC-----------------HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHH
T ss_pred             --CCCCCEeEEEECCchhhCC-----------------HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhh
Confidence              34578999998744  321                 568899999999999998876532 111              


Q ss_pred             -----CCcccHHHHHhhCCcEEEEEeeCCCCCCCCCc
Q 016441          159 -----FSNWNIKELAIGSSLSLIWCSEFKIEDYPAYN  190 (389)
Q Consensus       159 -----Y~sWnIe~LAa~aGL~L~~~~~F~~~~YPGY~  190 (389)
                           ++.-.+.++.+++||.+++...+.....|.+.
T Consensus       242 ~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~~~~~w~  278 (312)
T 3vc1_A          242 FECNIHSRREYLRAMADNRLVPHTIVDLTPDTLPYWE  278 (312)
T ss_dssp             HTCCCCBHHHHHHHHHTTTEEEEEEEECHHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHHHCCCEEEEEEeCCHHHHHHHH
Confidence                 12234567888999999999988755444443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=97.12  E-value=0.014  Score=52.36  Aligned_cols=140  Identities=16%  Similarity=0.114  Sum_probs=89.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      .+..+||=||=|.=.++..|++.+  +.++++.-.+. + ..+   .++.++....-. .+. +...|+.++.    +..
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~-~-~~~---~a~~~~~~~~~~~~~~-~~~~d~~~~~----~~~  127 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISR-P-QVN---QANARATAAGLANRVT-FSYADAMDLP----FED  127 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCH-H-HHH---HHHHHHHHTTCTTTEE-EEECCTTSCC----SCT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCH-H-HHH---HHHHHHHhcCCCcceE-EEECccccCC----CCC
Confidence            567899999999999999999876  35677665542 2 222   133333322111 133 3445777753    345


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC----------------------CC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT----------------------VP  158 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g----------------------~P  158 (389)
                      ..||.|+.+..---.   .+           ...+|+.+..+|+|+|.+.|+-...                      ..
T Consensus       128 ~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
T 3bus_A          128 ASFDAVWALESLHHM---PD-----------RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSL  193 (273)
T ss_dssp             TCEEEEEEESCTTTS---SC-----------HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCC
T ss_pred             CCccEEEEechhhhC---CC-----------HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCC
Confidence            789999987543221   11           1478899999999999998875321                      11


Q ss_pred             CCcccHHHHHhhCCcEEEEEeeCCCCCCC
Q 016441          159 FSNWNIKELAIGSSLSLIWCSEFKIEDYP  187 (389)
Q Consensus       159 Y~sWnIe~LAa~aGL~L~~~~~F~~~~YP  187 (389)
                      ++.-.+.++.+++||.+++...+.....+
T Consensus       194 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~  222 (273)
T 3bus_A          194 GGIDEYESDVRQAELVVTSTVDISAQARP  222 (273)
T ss_dssp             CCHHHHHHHHHHTTCEEEEEEECHHHHTT
T ss_pred             CCHHHHHHHHHHcCCeEEEEEECcHhHHH
Confidence            22345677888999999988877644333

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.05  E-value=0.0018  Score=61.93  Aligned_cols=127  Identities=15%  Similarity=0.130  Sum_probs=85.2

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ...++.+||=+|=|-=.||..+|+. | +..|+|.-.+. +.+    .-+++|++..+=.+....+.-||.++..     
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~-g-~~~V~avD~np-~a~----~~~~~N~~~N~v~~~v~~~~~D~~~~~~-----  189 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDP-YTF----KFLVENIHLNKVEDRMSAYNMDNRDFPG-----  189 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHH-T-CCEEEEECCCH-HHH----HHHHHHHHHTTCTTTEEEECSCTTTCCC-----
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHh-c-CCeEEEEECCH-HHH----HHHHHHHHHcCCCCcEEEEeCcHHHhcc-----
Confidence            3567889998888877888877775 3 45687766653 222    2467787655434445567789987643     


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC-CCCCccc---HHHHHhhCCcEE
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT-VPFSNWN---IKELAIGSSLSL  175 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g-~PY~sWn---Ie~LAa~aGL~L  175 (389)
                      ...||+||.|-|+...                  .|+..|..+|++||-||+-.... .-...|.   ++++|++.|+.+
T Consensus       190 ~~~~D~Vi~~~p~~~~------------------~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v  251 (278)
T 3k6r_A          190 ENIADRILMGYVVRTH------------------EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  251 (278)
T ss_dssp             CSCEEEEEECCCSSGG------------------GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             ccCCCEEEECCCCcHH------------------HHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence            4679999999997641                  47778889999999998743321 1122343   455788888765


Q ss_pred             E
Q 016441          176 I  176 (389)
Q Consensus       176 ~  176 (389)
                      .
T Consensus       252 ~  252 (278)
T 3k6r_A          252 E  252 (278)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.05  E-value=0.0042  Score=58.06  Aligned_cols=139  Identities=14%  Similarity=0.082  Sum_probs=94.5

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      +..++++||=+|=|.=.|+..||+..|..-.|+|-  |-.+++.+   .+.++   .++.+-.+..-.|+........ .
T Consensus        74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~av--D~s~~~~~---~l~~~---a~~~~ni~~V~~d~~~p~~~~~-~  144 (233)
T 4df3_A           74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGV--EFAPRVMR---DLLTV---VRDRRNIFPILGDARFPEKYRH-L  144 (233)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEE--ECCHHHHH---HHHHH---STTCTTEEEEESCTTCGGGGTT-T
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEE--eCCHHHHH---HHHHh---hHhhcCeeEEEEeccCcccccc-c
Confidence            45778999999999999999999998866677774  43333333   13333   2333322333347776655432 3


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC------CC-CcccHHHHHhhCC
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV------PF-SNWNIKELAIGSS  172 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------PY-~sWnIe~LAa~aG  172 (389)
                      ...+|.|+-++||...                ...++.+|..+|+|+|.+.|+++...      |- ...+.++.-+++|
T Consensus       145 ~~~vDvVf~d~~~~~~----------------~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~G  208 (233)
T 4df3_A          145 VEGVDGLYADVAQPEQ----------------AAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGG  208 (233)
T ss_dssp             CCCEEEEEECCCCTTH----------------HHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTT
T ss_pred             cceEEEEEEeccCChh----------------HHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCC
Confidence            3679999999998852                23688999999999999999986542      11 1133444556789


Q ss_pred             cEEEEEeeCCC
Q 016441          173 LSLIWCSEFKI  183 (389)
Q Consensus       173 L~L~~~~~F~~  183 (389)
                      |.+++...+++
T Consensus       209 F~l~e~i~L~p  219 (233)
T 4df3_A          209 LEIKDVVHLDP  219 (233)
T ss_dssp             CCEEEEEECTT
T ss_pred             CEEEEEEccCC
Confidence            99999887654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.04  E-value=0.0016  Score=59.94  Aligned_cols=129  Identities=16%  Similarity=0.190  Sum_probs=86.5

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEeccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-KKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-r~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ..++.+||=+|=|.=.++..|++..+.+..+++.-.+  ++..+   .+++|++.. ....+.+ ...|+.+     .+.
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~---~a~~~~~~~~g~~~v~~-~~~d~~~-----~~~  176 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERD--EDNLK---KAMDNLSEFYDIGNVRT-SRSDIAD-----FIS  176 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSC--HHHHH---HHHHHHHTTSCCTTEEE-ECSCTTT-----CCC
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECC--HHHHH---HHHHHHHhcCCCCcEEE-EECchhc-----cCc
Confidence            4567899999999999999999875444567665443  33332   355565433 2112343 3447765     133


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      ...||.|+.|.|+.                   ..+++.+..+|+++|.+.++.....  ...++.+..+++||..++..
T Consensus       177 ~~~fD~Vi~~~~~~-------------------~~~l~~~~~~LkpgG~l~i~~~~~~--~~~~~~~~l~~~Gf~~~~~~  235 (275)
T 1yb2_A          177 DQMYDAVIADIPDP-------------------WNHVQKIASMMKPGSVATFYLPNFD--QSEKTVLSLSASGMHHLETV  235 (275)
T ss_dssp             SCCEEEEEECCSCG-------------------GGSHHHHHHTEEEEEEEEEEESSHH--HHHHHHHHSGGGTEEEEEEE
T ss_pred             CCCccEEEEcCcCH-------------------HHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCeEEEEE
Confidence            46899999977643                   1678889999999999999875432  23456666677899888776


Q ss_pred             eC
Q 016441          180 EF  181 (389)
Q Consensus       180 ~F  181 (389)
                      ..
T Consensus       236 ~~  237 (275)
T 1yb2_A          236 EL  237 (275)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.03  E-value=0.0045  Score=55.17  Aligned_cols=136  Identities=11%  Similarity=0.078  Sum_probs=85.9

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..++.+||=+|=|.=.++..|++..+ ...++|.-.+  ++..+   .+..|.+..  .++.+ ..-|+........+. 
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s--~~~~~---~a~~~~~~~--~~v~~-~~~d~~~~~~~~~~~-  141 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYA--PRIMR---ELLDACAER--ENIIP-ILGDANKPQEYANIV-  141 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESC--HHHHH---HHHHHTTTC--TTEEE-EECCTTCGGGGTTTS-
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECC--HHHHH---HHHHHhhcC--CCeEE-EECCCCCcccccccC-
Confidence            34678999999999999999999876 4567776554  22222   234443322  23333 345776622212233 


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC-CCCC-------cccHHHHHhhCC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT-VPFS-------NWNIKELAIGSS  172 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g-~PY~-------sWnIe~LAa~aG  172 (389)
                      ..||.|+.++|..+                ....+++.+..+|+|+|.+.|+++.. .+..       .-.+. +.+++|
T Consensus       142 ~~~D~v~~~~~~~~----------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~G  204 (230)
T 1fbn_A          142 EKVDVIYEDVAQPN----------------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGG  204 (230)
T ss_dssp             CCEEEEEECCCSTT----------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHT
T ss_pred             ccEEEEEEecCChh----------------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCC
Confidence            67999996655433                24577889999999999999985432 1111       13444 556789


Q ss_pred             cEEEEEeeCCC
Q 016441          173 LSLIWCSEFKI  183 (389)
Q Consensus       173 L~L~~~~~F~~  183 (389)
                      |.+++..++++
T Consensus       205 f~~~~~~~~~~  215 (230)
T 1fbn_A          205 FKIVDEVDIEP  215 (230)
T ss_dssp             EEEEEEEECTT
T ss_pred             CEEEEEEccCC
Confidence            99988876543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=97.02  E-value=0.0047  Score=53.09  Aligned_cols=128  Identities=16%  Similarity=0.134  Sum_probs=84.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ...+||=||=|.=.++..|++.   +.+++++-++  +++.          +..++.+.......|+.++.........+
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s--~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADR---GIEAVGVDGD--RTLV----------DAARAAGAGEVHLASYAQLAEAKVPVGKD  116 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTT---TCEEEEEESC--HHHH----------HHHHHTCSSCEEECCHHHHHTTCSCCCCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCC--HHHH----------HHHHHhcccccchhhHHhhcccccccCCC
Confidence            4589999999999999999876   3466665443  2222          22222233334455666664433344567


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC------------------------
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP------------------------  158 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P------------------------  158 (389)
                      ||.|+.++... .   ++           ...+++.+..+|+++|.+.|+......                        
T Consensus       117 fD~v~~~~~l~-~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (227)
T 3e8s_A          117 YDLICANFALL-H---QD-----------IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQP  181 (227)
T ss_dssp             EEEEEEESCCC-S---SC-----------CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCC
T ss_pred             ccEEEECchhh-h---hh-----------HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCccc
Confidence            99999997765 2   22           236888999999999999998642110                        


Q ss_pred             -----CCcccHHHHHhhCCcEEEEEee
Q 016441          159 -----FSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       159 -----Y~sWnIe~LAa~aGL~L~~~~~  180 (389)
                           ++.-++.++.+++||.+++...
T Consensus       182 ~~~~~~~~~~~~~~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          182 MPWYFRTLASWLNALDMAGLRLVSLQE  208 (227)
T ss_dssp             EEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred             ceEEEecHHHHHHHHHHcCCeEEEEec
Confidence                 1223466788999999998765

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=97.00  E-value=0.0085  Score=54.78  Aligned_cols=135  Identities=14%  Similarity=0.059  Sum_probs=88.9

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCc
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDL   98 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~L   98 (389)
                      ...+..+||=||=|.=.++..|++.++  ..+++.-..  +.+.+   .++.++....- ..+.+. ..|+.++.    +
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~~~~~-~~d~~~~~----~  146 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIA--PVQNK---RNEEYNNQAGLADNITVK-YGSFLEIP----C  146 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESC--HHHHH---HHHHHHHHHTCTTTEEEE-ECCTTSCS----S
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCC--HHHHH---HHHHHHHhcCCCcceEEE-EcCcccCC----C
Confidence            456788999999999999999998874  366665443  33332   24444433221 124443 44777653    3


Q ss_pred             CCCCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC---CC---------------
Q 016441           99 RTRKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT---VP---------------  158 (389)
Q Consensus        99 k~~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g---~P---------------  158 (389)
                      ....||.|+.++.  |+.     +           ...+|+.+..+|+|+|.+.++-...   .+               
T Consensus       147 ~~~~fD~v~~~~~l~~~~-----~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (297)
T 2o57_A          147 EDNSYDFIWSQDAFLHSP-----D-----------KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHD  210 (297)
T ss_dssp             CTTCEEEEEEESCGGGCS-----C-----------HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSS
T ss_pred             CCCCEeEEEecchhhhcC-----C-----------HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCC
Confidence            4578999998854  332     1           3588999999999999998875321   11               


Q ss_pred             -CCcccHHHHHhhCCcEEEEEeeCC
Q 016441          159 -FSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       159 -Y~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                       .+.-.+.++.+++||.+++...+.
T Consensus       211 ~~~~~~~~~~l~~aGf~~~~~~~~~  235 (297)
T 2o57_A          211 MGSLGLYRSLAKECGLVTLRTFSRP  235 (297)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred             CCCHHHHHHHHHHCCCeEEEEEECc
Confidence             122345678899999999887654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.99  E-value=0.00089  Score=62.10  Aligned_cols=149  Identities=18%  Similarity=0.149  Sum_probs=92.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=+|=|.=.++..|++..+....|+|.-.+  ....+   .+++|++.+.-.++.++ .-|++++.........
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~--~~~l~---~~~~~~~~~g~~~v~~~-~~D~~~~~~~~~~~~~  155 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEIS--KTRTK---ALKSNINRMGVLNTIII-NADMRKYKDYLLKNEI  155 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESC--HHHHH---HHHHHHHHTTCCSEEEE-ESCHHHHHHHHHHTTC
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCC--HHHHH---HHHHHHHHhCCCcEEEE-eCChHhcchhhhhccc
Confidence            467899999998888999999876444567776554  22222   25666655432234443 4577765321000146


Q ss_pred             CcceEEEcCCCCCCCCCc--c---chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHH-HhhCCcE
Q 016441          102 KFDRIIFNFPHAGFYGKE--D---NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKEL-AIGSSLS  174 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkE--D---~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~L-Aa~aGL~  174 (389)
                      .||+|+.|-|..|. |.-  +   ....+.....+...++..|..+|++||.+.++.|+-.|- +...|..+ +++.++.
T Consensus       156 ~fD~Vl~d~Pcs~~-g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~  234 (274)
T 3ajd_A          156 FFDKILLDAPCSGN-IIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVE  234 (274)
T ss_dssp             CEEEEEEEECCC-------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEE
T ss_pred             cCCEEEEcCCCCCC-cccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcE
Confidence            79999999999874 210  0   011122233456789999999999999999999987664 44555553 4556777


Q ss_pred             EEE
Q 016441          175 LIW  177 (389)
Q Consensus       175 L~~  177 (389)
                      ++.
T Consensus       235 ~~~  237 (274)
T 3ajd_A          235 LII  237 (274)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.99  E-value=0.0073  Score=53.61  Aligned_cols=135  Identities=12%  Similarity=0.109  Sum_probs=91.4

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      .++....+..+||=||=|.=.++..|++.   +.++++.-.+  .+..+          ..++. +.+ ...|+.++-. 
T Consensus        34 ~~l~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s--~~~~~----------~a~~~-~~~-~~~d~~~~~~-   95 (240)
T 3dli_A           34 RYIPYFKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDIN--EDMIK----------FCEGK-FNV-VKSDAIEYLK-   95 (240)
T ss_dssp             GGGGGTTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSC--HHHHH----------HHHTT-SEE-ECSCHHHHHH-
T ss_pred             HHHhhhcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECC--HHHHH----------HHHhh-cce-eeccHHHHhh-
Confidence            44566677899999999999999999886   3466655443  22221          22222 433 3456655311 


Q ss_pred             CCcCCCCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC----------------
Q 016441           96 PDLRTRKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV----------------  157 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----------------  157 (389)
                       .+....||.|+.+.-  |+..   +           -+..+|+.+..+|+|+|.+.++..+..                
T Consensus        96 -~~~~~~fD~i~~~~~l~~~~~---~-----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
T 3dli_A           96 -SLPDKYLDGVMISHFVEHLDP---E-----------RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKK  160 (240)
T ss_dssp             -TSCTTCBSEEEEESCGGGSCG---G-----------GHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCS
T ss_pred             -hcCCCCeeEEEECCchhhCCc---H-----------HHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccc
Confidence             234578999998743  3321   1           146889999999999999999876532                


Q ss_pred             CCCcccHHHHHhhCCcEEEEEeeCCC
Q 016441          158 PFSNWNIKELAIGSSLSLIWCSEFKI  183 (389)
Q Consensus       158 PY~sWnIe~LAa~aGL~L~~~~~F~~  183 (389)
                      +++...+.++.+++||.+++...+.+
T Consensus       161 ~~~~~~l~~~l~~aGf~~~~~~~~~~  186 (240)
T 3dli_A          161 PVHPETLKFILEYLGFRDVKIEFFEE  186 (240)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEEEEECC
T ss_pred             cCCHHHHHHHHHHCCCeEEEEEEecc
Confidence            24456788899999999999888864

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.99  E-value=0.0068  Score=52.52  Aligned_cols=135  Identities=13%  Similarity=0.160  Sum_probs=87.3

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC------E-EEeccccCCCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT------C-ILHGVDATTME   93 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv------~-VlfgVDATkL~   93 (389)
                      ..+..+||=||=|.=.++..|++.   +.++++.-.+  ..+.+   .++.+   ++..+.      . -+...|+..+.
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s--~~~~~---~a~~~---~~~~~~~~~~~~~~~~~~~d~~~~~   96 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDIN--SEAIR---LAETA---ARSPGLNQKTGGKAEFKVENASSLS   96 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHH---TTCCSCCSSSSCEEEEEECCTTSCC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECC--HHHHH---HHHHH---HHhcCCccccCcceEEEEecccccC
Confidence            346789999999999999999986   3466665444  22222   12222   233443      2 33455666653


Q ss_pred             CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC----------------
Q 016441           94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV----------------  157 (389)
Q Consensus        94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----------------  157 (389)
                          +....||.|+.+....-.   .        +......+++.+..+|+++|.+.++.....                
T Consensus        97 ----~~~~~~D~v~~~~~l~~~---~--------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~  161 (235)
T 3sm3_A           97 ----FHDSSFDFAVMQAFLTSV---P--------DPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPI  161 (235)
T ss_dssp             ----SCTTCEEEEEEESCGGGC---C--------CHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHH
T ss_pred             ----CCCCceeEEEEcchhhcC---C--------CHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccc
Confidence                345789999998654432   1        122244788899999999999988743211                


Q ss_pred             ----------------------CCCcccHHHHHhhCCcEEEEEeeC
Q 016441          158 ----------------------PFSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       158 ----------------------PY~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                                            .++.-.++++.+++||.+++....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~  207 (235)
T 3sm3_A          162 TKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVK  207 (235)
T ss_dssp             HCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred             hhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence                                  234456777888999998886543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.98  E-value=0.0033  Score=58.32  Aligned_cols=130  Identities=17%  Similarity=0.152  Sum_probs=84.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeccccCCCCCCCCc
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT---CILHGVDATTMELHPDL   98 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv---~VlfgVDATkL~~~~~L   98 (389)
                      .+..+||=||=|.=.++..|++.++  ..+++.-.+  ++..+   .+++++   ++.|.   .-+...|+.++.     
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s--~~~~~---~a~~~~---~~~~~~~~v~~~~~d~~~~~-----  153 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLS--KNQHA---RCEQVL---ASIDTNRSRQVLLQGWEDFA-----  153 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESC--HHHHH---HHHHHH---HTSCCSSCEEEEESCGGGCC-----
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECC--HHHHH---HHHHHH---HhcCCCCceEEEECChHHCC-----
Confidence            4678999999999999999998874  466665544  22222   133333   33332   223345776652     


Q ss_pred             CCCCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC------------------
Q 016441           99 RTRKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP------------------  158 (389)
Q Consensus        99 k~~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P------------------  158 (389)
                        ..||.|+.+..  |++.   ++           ...+|+.+..+|+|+|.+.|+......                  
T Consensus       154 --~~fD~v~~~~~l~~~~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (318)
T 2fk8_A          154 --EPVDRIVSIEAFEHFGH---EN-----------YDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARF  217 (318)
T ss_dssp             --CCCSEEEEESCGGGTCG---GG-----------HHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHH
T ss_pred             --CCcCEEEEeChHHhcCH---HH-----------HHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccch
Confidence              57999998843  4431   11           457889999999999999887643221                  


Q ss_pred             --------------CCcccHHHHHhhCCcEEEEEeeCC
Q 016441          159 --------------FSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       159 --------------Y~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                                    ++.=.+.++.+++||.+++...+.
T Consensus       218 ~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~  255 (318)
T 2fk8_A          218 IKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLR  255 (318)
T ss_dssp             HHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEECH
T ss_pred             hhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEEecc
Confidence                          122246667888899888776654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=96.98  E-value=0.00089  Score=60.51  Aligned_cols=143  Identities=17%  Similarity=0.272  Sum_probs=90.7

Q ss_pred             cccccCCCC-----------CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-----
Q 016441           15 EKWIKHYSS-----------NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-----   78 (389)
Q Consensus        15 ~K~~~~Yss-----------~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-----   78 (389)
                      ..|...|..           ..+||=||=|.=.|+..||+... ..++++.  |..+.+.+   .+.+|++.++.     
T Consensus        30 ~~w~~~f~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gv--D~s~~~l~---~a~~~~~~~~~~~~~~  103 (246)
T 2vdv_E           30 MDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFP-EDLILGM--EIRVQVTN---YVEDRIIALRNNTASK  103 (246)
T ss_dssp             CCGGGTCGGGBC----CBSCCEEEEEETCTTSHHHHHHHHHST-TSEEEEE--ESCHHHHH---HHHHHHHHHHHTC-CC
T ss_pred             CCHHHHhCcccccccccCCCCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEE--EcCHHHHH---HHHHHHHHHhhccccc
Confidence            367777764           56799999999999999998762 3456654  53333333   36677776632     


Q ss_pred             ---CCCEEEeccccCC-CCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441           79 ---LGTCILHGVDATT-MELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus        79 ---~Gv~VlfgVDATk-L~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                         .++. +...|+.+ |...  +....+|.|+.+||-.-.+.+..      ..+.+...|+..+..+|++||.+.++..
T Consensus       104 ~~~~nv~-~~~~D~~~~l~~~--~~~~~~d~v~~~~p~p~~k~~~~------~~r~~~~~~l~~~~~~LkpgG~l~~~td  174 (246)
T 2vdv_E          104 HGFQNIN-VLRGNAMKFLPNF--FEKGQLSKMFFCFPDPHFKQRKH------KARIITNTLLSEYAYVLKEGGVVYTITD  174 (246)
T ss_dssp             STTTTEE-EEECCTTSCGGGT--SCTTCEEEEEEESCCCC------------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cCCCcEE-EEeccHHHHHHHh--ccccccCEEEEECCCcccccchh------HHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence               1333 34568876 4322  34578999999999866433211      1122236788999999999999998543


Q ss_pred             CCCCCCcccHHHHHhhCCc
Q 016441          155 TTVPFSNWNIKELAIGSSL  173 (389)
Q Consensus       155 ~g~PY~sWnIe~LAa~aGL  173 (389)
                      . ..|..|-.+.+.....+
T Consensus       175 ~-~~~~~~~~~~~~~~~~~  192 (246)
T 2vdv_E          175 V-KDLHEWMVKHLEEHPLF  192 (246)
T ss_dssp             C-HHHHHHHHHHHHHSTTE
T ss_pred             c-HHHHHHHHHHHHhCcCe
Confidence            3 34667776666554433

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=96.96  E-value=0.0075  Score=53.77  Aligned_cols=134  Identities=16%  Similarity=0.189  Sum_probs=86.0

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+..+||=||=|.=.++..|++..   ..+++.  |-.+++.+   .++.+++...-.++.+. ..|+.++.    +..
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~v--D~s~~~~~---~a~~~~~~~~~~~v~~~-~~d~~~~~----~~~   85 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYV---QECIGV--DATKEMVE---VASSFAQEKGVENVRFQ-QGTAESLP----FPD   85 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEE--ESCHHHHH---HHHHHHHHHTCCSEEEE-ECBTTBCC----SCT
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhC---CEEEEE--ECCHHHHH---HHHHHHHHcCCCCeEEE-ecccccCC----CCC
Confidence            3567899999999999999998764   256554  43333332   24445444322234444 44777653    345


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC----------------------CC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT----------------------VP  158 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g----------------------~P  158 (389)
                      ..||.|+.++.---.   .|           ...+++.+..+|+++|.+.++-...                      ..
T Consensus        86 ~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (239)
T 1xxl_A           86 DSFDIITCRYAAHHF---SD-----------VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRE  151 (239)
T ss_dssp             TCEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCC
T ss_pred             CcEEEEEECCchhhc---cC-----------HHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCC
Confidence            789999998643221   11           3478899999999999999874322                      11


Q ss_pred             CCcccHHHHHhhCCcEEEEEeeC
Q 016441          159 FSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       159 Y~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      ++.-.+.++.+++||..+....+
T Consensus       152 ~~~~~~~~ll~~aGf~~~~~~~~  174 (239)
T 1xxl_A          152 SSLSEWQAMFSANQLAYQDIQKW  174 (239)
T ss_dssp             CBHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCcEEEEEee
Confidence            23334566778889988876655

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.95  E-value=0.0028  Score=61.68  Aligned_cols=157  Identities=17%  Similarity=0.181  Sum_probs=97.9

Q ss_pred             cccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCC
Q 016441           15 EKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMEL   94 (389)
Q Consensus        15 ~K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~   94 (389)
                      ..++..+ ++.+||=+|=|.=.||..+|+.   +..++|.-.+  .+..+   .++.|++...-.++. .+.-|+.++-.
T Consensus       202 ~~~~~~~-~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s--~~~~~---~a~~n~~~n~~~~~~-~~~~d~~~~~~  271 (382)
T 1wxx_A          202 RLYMERF-RGERALDVFSYAGGFALHLALG---FREVVAVDSS--AEALR---RAEENARLNGLGNVR-VLEANAFDLLR  271 (382)
T ss_dssp             HHHGGGC-CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESC--HHHHH---HHHHHHHHTTCTTEE-EEESCHHHHHH
T ss_pred             HHHHHhc-CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECC--HHHHH---HHHHHHHHcCCCCce-EEECCHHHHHH
Confidence            3455556 7778999999999999999986   3456655443  33332   366676543322333 44457765421


Q ss_pred             CCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCC-cc--cHHHHHhhC
Q 016441           95 HPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFS-NW--NIKELAIGS  171 (389)
Q Consensus        95 ~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~-sW--nIe~LAa~a  171 (389)
                      ...-...+||.|+.|-|-.+. ++++    +.........++..|..+|+++|.+.++.+....-. .|  .+.+.+.++
T Consensus       272 ~~~~~~~~fD~Ii~dpP~~~~-~~~~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~  346 (382)
T 1wxx_A          272 RLEKEGERFDLVVLDPPAFAK-GKKD----VERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDA  346 (382)
T ss_dssp             HHHHTTCCEEEEEECCCCSCC-STTS----HHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCeeEEEECCCCCCC-ChhH----HHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            100014689999999998874 3332    444556678899999999999999999988765422 12  233456667


Q ss_pred             C--cEEEEEeeCCCCCCC
Q 016441          172 S--LSLIWCSEFKIEDYP  187 (389)
Q Consensus       172 G--L~L~~~~~F~~~~YP  187 (389)
                      |  +.+++. ...+.++|
T Consensus       347 g~~~~~i~~-~~~~~d~p  363 (382)
T 1wxx_A          347 HRLLRVVEK-RGQPFDHP  363 (382)
T ss_dssp             TCCEEEEEE-ECCCTTSC
T ss_pred             CCeEEEEEc-CCCCCCCC
Confidence            6  444443 23445555

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.95  E-value=0.0037  Score=57.27  Aligned_cols=128  Identities=18%  Similarity=0.189  Sum_probs=84.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      .+..+||-+|=|.=.++.+|++..+....+++.-.+  ++..+   .+++|++...- ..+. +..-|+.+.     +..
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~v~-~~~~d~~~~-----~~~  179 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR--EEFAK---LAESNLTKWGLIERVT-IKVRDISEG-----FDE  179 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCC--HHHHH---HHHHHHHHTTCGGGEE-EECCCGGGC-----CSC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECC--HHHHH---HHHHHHHHcCCCCCEE-EEECCHHHc-----ccC
Confidence            457799999999999999999986555566665443  33332   35566554321 1233 344566654     334


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEee
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~  180 (389)
                      ..||.|+.|.|..                   ..++..+..+|+++|.+.+......  ....+.+..++.|+..++...
T Consensus       180 ~~~D~V~~~~~~~-------------------~~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~gf~~~~~~~  238 (277)
T 1o54_A          180 KDVDALFLDVPDP-------------------WNYIDKCWEALKGGGRFATVCPTTN--QVQETLKKLQELPFIRIEVWE  238 (277)
T ss_dssp             CSEEEEEECCSCG-------------------GGTHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHSSEEEEEEEC
T ss_pred             CccCEEEECCcCH-------------------HHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCceeEEEE
Confidence            6799999987633                   2577888999999999998875331  223455556679998777654


Q ss_pred             C
Q 016441          181 F  181 (389)
Q Consensus       181 F  181 (389)
                      -
T Consensus       239 ~  239 (277)
T 1o54_A          239 S  239 (277)
T ss_dssp             C
T ss_pred             E
Confidence            3

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.88  E-value=0.004  Score=55.69  Aligned_cols=133  Identities=14%  Similarity=0.143  Sum_probs=88.6

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+..+||=+|=|.=.++.+|++..+....+++.-.+  ++..+   .|++|++...-.+...+..-|+.+.     +..
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~--~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~  160 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIR--EDFAK---LAWENIKWAGFDDRVTIKLKDIYEG-----IEE  160 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSC--HHHHH---HHHHHHHHHTCTTTEEEECSCGGGC-----CCC
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecC--HHHHH---HHHHHHHHcCCCCceEEEECchhhc-----cCC
Confidence            3567899999999999999999986655667665443  33332   3666776554333234455676643     334


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCC--cEEEEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSS--LSLIWC  178 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aG--L~L~~~  178 (389)
                      ..||.|+.|.|..                   ..+++.+..+|+++|.+.+......  ....+.+..++.|  +..++.
T Consensus       161 ~~~D~v~~~~~~~-------------------~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~g~~f~~~~~  219 (255)
T 3mb5_A          161 ENVDHVILDLPQP-------------------ERVVEHAAKALKPGGFFVAYTPCSN--QVMRLHEKLREFKDYFMKPRT  219 (255)
T ss_dssp             CSEEEEEECSSCG-------------------GGGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHTGGGBSCCEE
T ss_pred             CCcCEEEECCCCH-------------------HHHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHHHcCCCccccEE
Confidence            6799999987733                   2578889999999999988753321  2234556667788  776666


Q ss_pred             eeCCCC
Q 016441          179 SEFKIE  184 (389)
Q Consensus       179 ~~F~~~  184 (389)
                      ......
T Consensus       220 ~e~~~r  225 (255)
T 3mb5_A          220 INVLVF  225 (255)
T ss_dssp             ECCCCC
T ss_pred             EEEeee
Confidence            554433

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.84  E-value=0.019  Score=50.82  Aligned_cols=135  Identities=10%  Similarity=0.135  Sum_probs=88.1

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+..+||=||=|.=.++..|++.+  +..+++.-.+  +++.+.   +..++...  ..+. ....|+.++.    +..
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s--~~~~~~---a~~~~~~~--~~~~-~~~~d~~~~~----~~~  118 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDIC--SNIVNM---ANERVSGN--NKII-FEANDILTKE----FPE  118 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESC--HHHHHH---HHHTCCSC--TTEE-EEECCTTTCC----CCT
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCC--HHHHHH---HHHHhhcC--CCeE-EEECccccCC----CCC
Confidence            3467799999999999999999987  3466665443  222221   22222111  2233 3455777763    345


Q ss_pred             CCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC-------------------CC
Q 016441          101 RKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV-------------------PF  159 (389)
Q Consensus       101 ~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-------------------PY  159 (389)
                      ..||.|+.+..  |++              ..-...+++.+..+|+|+|.+.++-....                   .+
T Consensus       119 ~~fD~v~~~~~l~~~~--------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (266)
T 3ujc_A          119 NNFDLIYSRDAILALS--------------LENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLI  184 (266)
T ss_dssp             TCEEEEEEESCGGGSC--------------HHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCC
T ss_pred             CcEEEEeHHHHHHhcC--------------hHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCC
Confidence            78999999843  332              12245888999999999999998864221                   12


Q ss_pred             CcccHHHHHhhCCcEEEEEeeCCC
Q 016441          160 SNWNIKELAIGSSLSLIWCSEFKI  183 (389)
Q Consensus       160 ~sWnIe~LAa~aGL~L~~~~~F~~  183 (389)
                      +.-.+.++.+++||..++...+..
T Consensus       185 ~~~~~~~~l~~~Gf~~~~~~~~~~  208 (266)
T 3ujc_A          185 TVEEYADILTACNFKNVVSKDLSD  208 (266)
T ss_dssp             CHHHHHHHHHHTTCEEEEEEECHH
T ss_pred             CHHHHHHHHHHcCCeEEEEEeCCH
Confidence            334577788899999998876653

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.83  E-value=0.005  Score=53.28  Aligned_cols=126  Identities=17%  Similarity=0.169  Sum_probs=85.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++. + ...++|.-.+  +++.+   .++.|+....-.++.+ ..-|+.+.      ...
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~v~~-~~~d~~~~------~~~  124 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDIS--DESMT---AAEENAALNGIYDIAL-QKTSLLAD------VDG  124 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESC--HHHHH---HHHHHHHHTTCCCCEE-EESSTTTT------CCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECC--HHHHH---HHHHHHHHcCCCceEE-Eecccccc------CCC
Confidence            45789999999999999998874 3 3466665544  33332   2555655443333443 34566543      136


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEee
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~  180 (389)
                      .||.|+.|.|.                 ..+..+++.+..+|+++|.+.++....  .....+.++.+++|+.+++...
T Consensus       125 ~fD~i~~~~~~-----------------~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~~~~~Gf~~~~~~~  184 (205)
T 3grz_A          125 KFDLIVANILA-----------------EILLDLIPQLDSHLNEDGQVIFSGIDY--LQLPKIEQALAENSFQIDLKMR  184 (205)
T ss_dssp             CEEEEEEESCH-----------------HHHHHHGGGSGGGEEEEEEEEEEEEEG--GGHHHHHHHHHHTTEEEEEEEE
T ss_pred             CceEEEECCcH-----------------HHHHHHHHHHHHhcCCCCEEEEEecCc--ccHHHHHHHHHHcCCceEEeec
Confidence            89999999753                 124788999999999999999864332  2455678888999999887654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=96.83  E-value=0.027  Score=48.45  Aligned_cols=130  Identities=12%  Similarity=0.133  Sum_probs=86.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++. +  .++++.-.+  +++          ++..++....+ ...|+.++..  .+...
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~--~~~----------~~~~~~~~~~~-~~~d~~~~~~--~~~~~   92 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAF--PEA----------AEQAKEKLDHV-VLGDIETMDM--PYEEE   92 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESS--HHH----------HHHHHTTSSEE-EESCTTTCCC--CSCTT
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCC--HHH----------HHHHHHhCCcE-EEcchhhcCC--CCCCC
Confidence            56789999999999999999886 3  566665443  222          22223333333 4457665322  23457


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC-------------------------
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT-------------------------  156 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g-------------------------  156 (389)
                      .||.|+.+..---.   .+           ...+++.+..+|+++|.+.++....                         
T Consensus        93 ~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (230)
T 3cc8_A           93 QFDCVIFGDVLEHL---FD-----------PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKT  158 (230)
T ss_dssp             CEEEEEEESCGGGS---SC-----------HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTT
T ss_pred             ccCEEEECChhhhc---CC-----------HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcc
Confidence            89999997542211   11           1378999999999999999986431                         


Q ss_pred             --CCCCcccHHHHHhhCCcEEEEEeeCCC
Q 016441          157 --VPFSNWNIKELAIGSSLSLIWCSEFKI  183 (389)
Q Consensus       157 --~PY~sWnIe~LAa~aGL~L~~~~~F~~  183 (389)
                        ..++.-.++++.+++||.++....+..
T Consensus       159 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  187 (230)
T 3cc8_A          159 HIRFFTFNEMLRMFLKAGYSISKVDRVYV  187 (230)
T ss_dssp             CCCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             eEEEecHHHHHHHHHHcCCeEEEEEeccc
Confidence              113455677899999999988776554

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=96.82  E-value=0.0063  Score=54.06  Aligned_cols=136  Identities=13%  Similarity=0.043  Sum_probs=85.3

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ...+.+||=+|=|.=.++..|++.++....++|.-.. .+.+..    +.++.+..  .++.+ ...|+.+.... ....
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s-~~~i~~----~~~~a~~~--~~v~~-~~~d~~~~~~~-~~~~  145 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFS-HRSGRD----LINLAKKR--TNIIP-VIEDARHPHKY-RMLI  145 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCC-HHHHHH----HHHHHHHC--TTEEE-ECSCTTCGGGG-GGGC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECC-HHHHHH----HHHHhhcc--CCeEE-EEcccCChhhh-cccC
Confidence            3467899999999999999999987544567665333 222211    12222211  34443 44577763211 1224


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC-----C----CCcccHHHHHhhC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV-----P----FSNWNIKELAIGS  171 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-----P----Y~sWnIe~LAa~a  171 (389)
                      ..||.|+.|.|...                ....++..+..+|+|+|.+.|+.....     +    +..+  .++.+++
T Consensus       146 ~~~D~V~~~~~~~~----------------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~l~~~  207 (233)
T 2ipx_A          146 AMVDVIFADVAQPD----------------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE--VKKMQQE  207 (233)
T ss_dssp             CCEEEEEECCCCTT----------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH--HHTTGGG
T ss_pred             CcEEEEEEcCCCcc----------------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH--HHHHHHC
Confidence            68999999988211                123567779999999999999876421     1    1222  3566788


Q ss_pred             CcEEEEEeeCCC
Q 016441          172 SLSLIWCSEFKI  183 (389)
Q Consensus       172 GL~L~~~~~F~~  183 (389)
                      ||.+++..+.++
T Consensus       208 Gf~~~~~~~~~~  219 (233)
T 2ipx_A          208 NMKPQEQLTLEP  219 (233)
T ss_dssp             TEEEEEEEECTT
T ss_pred             CCceEEEEecCC
Confidence            999998776653

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=96.81  E-value=0.0039  Score=54.29  Aligned_cols=135  Identities=16%  Similarity=0.258  Sum_probs=88.1

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      +.+.++.+..+||=||=|.=.++..|++..   .++++.-.+  +++.+   .++.+...    ++.++. .|+.++   
T Consensus        35 ~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s--~~~~~---~a~~~~~~----~v~~~~-~d~~~~---   98 (250)
T 2p7i_A           35 RAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEAS--EEAIS---HAQGRLKD----GITYIH-SRFEDA---   98 (250)
T ss_dssp             HHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESC--HHHHH---HHHHHSCS----CEEEEE-SCGGGC---
T ss_pred             HHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCC--HHHHH---HHHHhhhC----CeEEEE-ccHHHc---
Confidence            345556678899999999999999998753   366665443  22222   12222211    455443 477776   


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhH-hcccCCCeEEEEecCCC-----------------
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSS-GMLRDGGEVHVSHKTTV-----------------  157 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~-~lL~~~GeIHVTLk~g~-----------------  157 (389)
                        .....||.|+.++----.   +|           ...+++.+. .+|+|+|.+.|+..+..                 
T Consensus        99 --~~~~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~  162 (250)
T 2p7i_A           99 --QLPRRYDNIVLTHVLEHI---DD-----------PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNS  162 (250)
T ss_dssp             --CCSSCEEEEEEESCGGGC---SS-----------HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTT
T ss_pred             --CcCCcccEEEEhhHHHhh---cC-----------HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccch
Confidence              134679999988631111   11           147888999 99999999999875422                 


Q ss_pred             -------------CCCcccHHHHHhhCCcEEEEEeeCC
Q 016441          158 -------------PFSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       158 -------------PY~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                                   +++.-.++++.+++||.+++...+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  200 (250)
T 2p7i_A          163 AVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIF  200 (250)
T ss_dssp             CCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             hcccccccccccccCCHHHHHHHHHHCCCeEEEEeeeE
Confidence                         1334467888999999999876543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=96.76  E-value=0.0082  Score=53.46  Aligned_cols=132  Identities=10%  Similarity=0.050  Sum_probs=86.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=||=|.=.++..|++..  ..+++++-.+  +++.+.   +++++.   ..++ .+...|+.++.    +....
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~--~~~v~~vD~s--~~~~~~---a~~~~~---~~~~-~~~~~d~~~~~----~~~~~  108 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHG--AKKVLGIDLS--ERMLTE---AKRKTT---SPVV-CYEQKAIEDIA----IEPDA  108 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESC--HHHHHH---HHHHCC---CTTE-EEEECCGGGCC----CCTTC
T ss_pred             CCCEEEEECCCCCHHHHHHHHcC--CCEEEEEECC--HHHHHH---HHHhhc---cCCe-EEEEcchhhCC----CCCCC
Confidence            67899999999999999999873  2366665443  222221   333322   2233 34456777654    34578


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC----------------C-------C-
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT----------------V-------P-  158 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g----------------~-------P-  158 (389)
                      ||.|+.+...--.   ++           ...+++.+..+|+++|.+.|+....                .       . 
T Consensus       109 fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (253)
T 3g5l_A          109 YNVVLSSLALHYI---AS-----------FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRY  174 (253)
T ss_dssp             EEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCT
T ss_pred             eEEEEEchhhhhh---hh-----------HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccc
Confidence            9999998743221   22           3578899999999999999984321                0       0 


Q ss_pred             -------------------CCcccHHHHHhhCCcEEEEEeeCCC
Q 016441          159 -------------------FSNWNIKELAIGSSLSLIWCSEFKI  183 (389)
Q Consensus       159 -------------------Y~sWnIe~LAa~aGL~L~~~~~F~~  183 (389)
                                         ++.-.+.++.+++||.+++.....+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~  218 (253)
T 3g5l_A          175 FNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEP  218 (253)
T ss_dssp             TCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCC
T ss_pred             cccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCCC
Confidence                               0223477899999999999876554

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.76  E-value=0.0074  Score=54.09  Aligned_cols=133  Identities=15%  Similarity=0.224  Sum_probs=82.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++...   .+++  .|..+++.+.   +..+++...-.++.+ ...|+.++.    +...
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~g--vD~s~~~l~~---a~~~~~~~~~~~v~~-~~~d~~~l~----~~~~  102 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK---KVVA--FDLTEDILKV---ARAFIEGNGHQQVEY-VQGDAEQMP----FTDE  102 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS---EEEE--EESCHHHHHH---HHHHHHHTTCCSEEE-EECCC-CCC----SCTT
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC---EEEE--EeCCHHHHHH---HHHHHHhcCCCceEE-EEecHHhCC----CCCC
Confidence            4678999999999999999988642   5554  5533333332   444433211112333 345777653    4457


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC----------------------CCC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT----------------------VPF  159 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g----------------------~PY  159 (389)
                      .||.|+.++----.   .|           ...+|+.+..+|+|+|.+.++-...                      ..+
T Consensus       103 ~fD~V~~~~~l~~~---~d-----------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (260)
T 1vl5_A          103 RFHIVTCRIAAHHF---PN-----------PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAW  168 (260)
T ss_dssp             CEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCC
T ss_pred             CEEEEEEhhhhHhc---CC-----------HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCC
Confidence            89999998643221   12           2378899999999999999863211                      112


Q ss_pred             CcccHHHHHhhCCcEEEEEeeC
Q 016441          160 SNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       160 ~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      +.-.+.++.+++||.++....+
T Consensus       169 ~~~~~~~~l~~aGf~~~~~~~~  190 (260)
T 1vl5_A          169 KKSDWLKMLEEAGFELEELHCF  190 (260)
T ss_dssp             BHHHHHHHHHHHTCEEEEEEEE
T ss_pred             CHHHHHHHHHHCCCeEEEEEEe
Confidence            2334566778889988776554

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=96.76  E-value=0.004  Score=57.81  Aligned_cols=137  Identities=16%  Similarity=0.114  Sum_probs=89.9

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeccccCCCCCCCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT---CILHGVDATTMELHPD   97 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv---~VlfgVDATkL~~~~~   97 (389)
                      ..+..+||=||=|.=.++..||.....+.++++.-.+  +.+.+   .++.|+   ++.|.   .-+..-|+.++.    
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~---~a~~~~---~~~~~~~~v~~~~~d~~~~~----  183 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYD--PEALD---GATRLA---AGHALAGQITLHRQDAWKLD----  183 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESC--HHHHH---HHHHHH---TTSTTGGGEEEEECCGGGCC----
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECC--HHHHH---HHHHHH---HhcCCCCceEEEECchhcCC----
Confidence            4567899999999999999986433334566665443  33322   244443   33443   345567888764    


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-------------------
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-------------------  158 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-------------------  158 (389)
                      +. ..||.|+.|.+..-..           ...-...|++.+..+|+|||.+.|+.....|                   
T Consensus       184 ~~-~~fD~v~~~~~~~~~~-----------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~  251 (305)
T 3ocj_A          184 TR-EGYDLLTSNGLNIYEP-----------DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQ  251 (305)
T ss_dssp             CC-SCEEEEECCSSGGGCC-----------CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHH
T ss_pred             cc-CCeEEEEECChhhhcC-----------CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhh
Confidence            23 7899999987654321           1123456899999999999999998744321                   


Q ss_pred             -----------------CCcccHHHHHhhCCcEEEEEeeC
Q 016441          159 -----------------FSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       159 -----------------Y~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                                       ++.-.+.++.+++||..++....
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~  291 (305)
T 3ocj_A          252 LQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDD  291 (305)
T ss_dssp             HHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECC
T ss_pred             hhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcc
Confidence                             23334667889999999988763

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=96.75  E-value=0.0093  Score=53.86  Aligned_cols=137  Identities=20%  Similarity=0.199  Sum_probs=88.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeccccCCCCCCCCc
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT---CILHGVDATTMELHPDL   98 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv---~VlfgVDATkL~~~~~L   98 (389)
                      .+..+||=||=|.=.++..|++. + ...+++.-.+  +++.+   .++.++   +..|.   ..+...|+.++..   .
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s--~~~~~---~a~~~~---~~~~~~~~v~~~~~d~~~~~~---~  129 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIA--EVSIN---DARVRA---RNMKRRFKVFFRAQDSYGRHM---D  129 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESC--HHHHH---HHHHHH---HTSCCSSEEEEEESCTTTSCC---C
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECC--HHHHH---HHHHHH---HhcCCCccEEEEECCcccccc---C
Confidence            56789999999988888888775 3 3366665443  22222   133333   33332   2334557877632   1


Q ss_pred             CCCCcceEEEcCC-CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC---------------------
Q 016441           99 RTRKFDRIIFNFP-HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT---------------------  156 (389)
Q Consensus        99 k~~~FDrIIFNFP-H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g---------------------  156 (389)
                      ....||.|+.++. |...           .+..-...+++.+..+|+|+|.+.++..+.                     
T Consensus       130 ~~~~fD~v~~~~~l~~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (298)
T 1ri5_A          130 LGKEFDVISSQFSFHYAF-----------STSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIEL  198 (298)
T ss_dssp             CSSCEEEEEEESCGGGGG-----------SSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEEC
T ss_pred             CCCCcCEEEECchhhhhc-----------CCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEe
Confidence            3578999999864 2211           122336689999999999999999886441                     


Q ss_pred             -----CCC----------------------CcccHHHHHhhCCcEEEEEeeCC
Q 016441          157 -----VPF----------------------SNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       157 -----~PY----------------------~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                           -|.                      +.-.++++++++||.+++...|.
T Consensus       199 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~  251 (298)
T 1ri5_A          199 EKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI  251 (298)
T ss_dssp             CCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred             CccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence                 121                      11257789999999999998775

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=96.69  E-value=0.0087  Score=52.20  Aligned_cols=104  Identities=18%  Similarity=0.221  Sum_probs=67.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=||=|.=.++..|++.   +..+++.  |-..++.+.   ++.++.... .++.+. ..|+.++.    +. ..
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~--D~s~~~~~~---a~~~~~~~~-~~~~~~-~~d~~~~~----~~-~~  101 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK---FKNTWAV--DLSQEMLSE---AENKFRSQG-LKPRLA-CQDISNLN----IN-RK  101 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG---SSEEEEE--CSCHHHHHH---HHHHHHHTT-CCCEEE-CCCGGGCC----CS-CC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC---CCcEEEE--ECCHHHHHH---HHHHHhhcC-CCeEEE-ecccccCC----cc-CC
Confidence            5679999999999999999876   2455555  433333321   344433211 134443 44777654    22 67


Q ss_pred             cceEEEcC---CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          103 FDRIIFNF---PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       103 FDrIIFNF---PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      ||.|+.++   +|+..             ..-+..+++.+..+|+++|.+.++..
T Consensus       102 fD~v~~~~~~l~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (246)
T 1y8c_A          102 FDLITCCLDSTNYIID-------------SDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             EEEEEECTTGGGGCCS-------------HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ceEEEEcCccccccCC-------------HHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            99999976   56531             11255789999999999999998643

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.69  E-value=0.0074  Score=59.72  Aligned_cols=145  Identities=19%  Similarity=0.183  Sum_probs=95.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=+|=|.=.++..|++..+. ..|+|.-.+.. .+    ..+.+|++.+.- .+.+ ...|++++...  +...
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~-~l----~~~~~~~~~~g~-~~~~-~~~D~~~~~~~--~~~~  314 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQ-RL----SRVYDNLKRLGM-KATV-KQGDGRYPSQW--CGEQ  314 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTT-TH----HHHHHHHHHTTC-CCEE-EECCTTCTHHH--HTTC
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHH-HH----HHHHHHHHHcCC-CeEE-EeCchhhchhh--cccC
Confidence            46789999999999999999987643 56777665542 11    124556554321 2433 45688776421  2346


Q ss_pred             CcceEEEcCCCCCCCCC----cc-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCccc-HHH-HHhh
Q 016441          102 KFDRIIFNFPHAGFYGK----ED-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWN-IKE-LAIG  170 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gk----ED-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWn-Ie~-LAa~  170 (389)
                      .||+|+.|-|..|. |.    .+     ....+.....+-..++.+|..+|++||.+.++.|+-.|-...+ |.. +++.
T Consensus       315 ~fD~Vl~D~Pcsg~-g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~  393 (429)
T 1sqg_A          315 QFDRILLDAPCSAT-GVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRT  393 (429)
T ss_dssp             CEEEEEEECCCCCG-GGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCcc-cccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhC
Confidence            89999999999884 21    11     0122444556678999999999999999999999877654443 444 4455


Q ss_pred             CCcEEEE
Q 016441          171 SSLSLIW  177 (389)
Q Consensus       171 aGL~L~~  177 (389)
                      .++.++.
T Consensus       394 ~~~~~~~  400 (429)
T 1sqg_A          394 ADAELCE  400 (429)
T ss_dssp             TTCEECS
T ss_pred             CCCEEeC
Confidence            5776653

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.68  E-value=0.0016  Score=55.57  Aligned_cols=145  Identities=16%  Similarity=0.127  Sum_probs=75.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=+|=|.=.++..|++.. ...++++.-.+.  ++.+   .++.|++.... .+. +...|+.+.-........
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~--~~~~---~a~~~~~~~~~-~~~-~~~~d~~~~~~~~~~~~~  100 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSM--DALA---VARRNAERFGA-VVD-WAAADGIEWLIERAERGR  100 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC--------------------------CCHHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCH--HHHH---HHHHHHHHhCC-ceE-EEEcchHhhhhhhhhccC
Confidence            677899999999999999999875 344666665543  2222   24445443322 222 223344441000000127


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHH------------HhHHHHHHHHHhhHhcccCCCe-EEEEecCCCCCCcccHHHHH
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIE------------MHRSLVRDFFRNSSGMLRDGGE-VHVSHKTTVPFSNWNIKELA  168 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir------------~nr~LL~~FF~SA~~lL~~~Ge-IHVTLk~g~PY~sWnIe~LA  168 (389)
                      .||.|+.|.|-............++            ...+.+..|++.+..+|+++|. +.+.+...   ..-.+.++.
T Consensus       101 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~l  177 (215)
T 4dzr_A          101 PWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHN---QADEVARLF  177 (215)
T ss_dssp             CBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTS---CHHHHHHHT
T ss_pred             cccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCc---cHHHHHHHH
Confidence            8999999999765311111001111            1123348999999999999999 77666432   233455566


Q ss_pred             h--hCCcEEEE
Q 016441          169 I--GSSLSLIW  177 (389)
Q Consensus       169 a--~aGL~L~~  177 (389)
                      +  +.|+..++
T Consensus       178 ~~~~~gf~~~~  188 (215)
T 4dzr_A          178 APWRERGFRVR  188 (215)
T ss_dssp             GGGGGGTEECC
T ss_pred             HHhhcCCceEE
Confidence            6  67765443

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=96.67  E-value=0.014  Score=52.59  Aligned_cols=137  Identities=15%  Similarity=0.211  Sum_probs=89.8

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ...+..+||=||=|+=.++..|++.. .+..++++-.+  ..+.+   .++.++....-.+ ......|+.++.    +.
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~-~~~~~~d~~~~~----~~  102 (276)
T 3mgg_A           34 VYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDIS--PESLE---KARENTEKNGIKN-VKFLQANIFSLP----FE  102 (276)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESC--HHHHH---HHHHHHHHTTCCS-EEEEECCGGGCC----SC
T ss_pred             cCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECC--HHHHH---HHHHHHHHcCCCC-cEEEEcccccCC----CC
Confidence            44678899999999999999999875 34566665443  33332   2444443322122 333445777654    34


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC------------------------
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT------------------------  155 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~------------------------  155 (389)
                      ...||.|+.++.-.-.   .|           ...+++.+..+|+|+|.+.++..+                        
T Consensus       103 ~~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (276)
T 3mgg_A          103 DSSFDHIFVCFVLEHL---QS-----------PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQ  168 (276)
T ss_dssp             TTCEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHH
T ss_pred             CCCeeEEEEechhhhc---CC-----------HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHH
Confidence            5789999998654322   11           136788899999999999987532                        


Q ss_pred             ----CCCCCcccHHHHHhhCCcEEEEEeeC
Q 016441          156 ----TVPFSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       156 ----g~PY~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                          +.++..=.+..+.+++||..++..++
T Consensus       169 ~~~~~~~~~~~~l~~~l~~aGf~~v~~~~~  198 (276)
T 3mgg_A          169 AYMKGNSLVGRQIYPLLQESGFEKIRVEPR  198 (276)
T ss_dssp             HHTTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred             HhcCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence                12233345677899999999887755

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.61  E-value=0.0061  Score=62.02  Aligned_cols=147  Identities=16%  Similarity=0.145  Sum_probs=102.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=+|=|-=..|..||...+....|+|.-.+. +.+    ..+.+|++.+.-.++ .+..-|+.++...   ...
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~-~rl----~~~~~n~~r~g~~nv-~v~~~Da~~l~~~---~~~  174 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFP-KRA----KILSENIERWGVSNA-IVTNHAPAELVPH---FSG  174 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSH-HHH----HHHHHHHHHHTCSSE-EEECCCHHHHHHH---HTT
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCH-HHH----HHHHHHHHHcCCCce-EEEeCCHHHhhhh---ccc
Confidence            4578999999999899999998876555677765542 222    236777776643333 3445677775421   136


Q ss_pred             CcceEEEcCCCCCCCCC--cc-------chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhhC
Q 016441          102 KFDRIIFNFPHAGFYGK--ED-------NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIGS  171 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gk--ED-------~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~a  171 (389)
                      .||+|+.|=|..|. |.  .+       ....+.....+...++.+|..+|++||.+..+.|+-.|- +.-+|..+.++.
T Consensus       175 ~FD~Il~DaPCSg~-G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~  253 (456)
T 3m4x_A          175 FFDRIVVDAPCSGE-GMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENY  253 (456)
T ss_dssp             CEEEEEEECCCCCG-GGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHS
T ss_pred             cCCEEEECCCCCCc-cccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhC
Confidence            79999999999884 31  00       112344455677799999999999999999999988764 556777777888


Q ss_pred             CcEEEEE
Q 016441          172 SLSLIWC  178 (389)
Q Consensus       172 GL~L~~~  178 (389)
                      ++.++..
T Consensus       254 ~~~l~~~  260 (456)
T 3m4x_A          254 PVTIEEI  260 (456)
T ss_dssp             SEEEECC
T ss_pred             CCEEEec
Confidence            8766543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=96.60  E-value=0.037  Score=49.70  Aligned_cols=141  Identities=14%  Similarity=0.071  Sum_probs=85.5

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-----HHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-----DDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMEL   94 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-----eeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~   94 (389)
                      ..++.+||=||=|.=.++..|++.++....+++.-.+..     +.+ +   .++.++....- .++.++. .| .-...
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~-~---~a~~~~~~~~~~~~v~~~~-~d-~~~~~  114 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTL-G---QAWNHLLAGPLGDRLTVHF-NT-NLSDD  114 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCH-H---HHHHHHHTSTTGGGEEEEC-SC-CTTTC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHH-H---HHHHHHHhcCCCCceEEEE-CC-hhhhc
Confidence            356789999999999999999998764467877776642     122 1   13333322110 1233333 24 11111


Q ss_pred             CCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC-----------------
Q 016441           95 HPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV-----------------  157 (389)
Q Consensus        95 ~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-----------------  157 (389)
                      ...+....||.|+.+.+---.   .+           ...+++.++.+++++|.+.++-....                 
T Consensus       115 ~~~~~~~~fD~v~~~~~l~~~---~~-----------~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~  180 (275)
T 3bkx_A          115 LGPIADQHFDRVVLAHSLWYF---AS-----------ANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQG  180 (275)
T ss_dssp             CGGGTTCCCSEEEEESCGGGS---SC-----------HHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEEEccchhhC---CC-----------HHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHH
Confidence            122345789999998764321   11           01366777788888999998642211                 


Q ss_pred             ---------CCC------cccHHHHHhhCCcEEEEEeeC
Q 016441          158 ---------PFS------NWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       158 ---------PY~------sWnIe~LAa~aGL~L~~~~~F  181 (389)
                               +..      .=.+.++++++||.+++...+
T Consensus       181 ~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          181 LLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             HHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             HHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence                     111      126677888999999998887

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=96.59  E-value=0.0075  Score=52.92  Aligned_cols=135  Identities=16%  Similarity=0.164  Sum_probs=87.7

Q ss_pred             cccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCC
Q 016441           17 WIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHP   96 (389)
Q Consensus        17 ~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~   96 (389)
                      .+..+.+..+||=||=|.=.++..|++.         +..|-.+++.+.   +.       +.++.++. .|+..+.   
T Consensus        41 ~l~~~~~~~~vLDiG~G~G~~~~~l~~~---------~~vD~s~~~~~~---a~-------~~~~~~~~-~d~~~~~---   97 (219)
T 1vlm_A           41 AVKCLLPEGRGVEIGVGTGRFAVPLKIK---------IGVEPSERMAEI---AR-------KRGVFVLK-GTAENLP---   97 (219)
T ss_dssp             HHHHHCCSSCEEEETCTTSTTHHHHTCC---------EEEESCHHHHHH---HH-------HTTCEEEE-CBTTBCC---
T ss_pred             HHHHhCCCCcEEEeCCCCCHHHHHHHHH---------hccCCCHHHHHH---HH-------hcCCEEEE-cccccCC---
Confidence            3444445789999999888888887643         666644443332   22       22666554 4777653   


Q ss_pred             CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC-------------------
Q 016441           97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV-------------------  157 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-------------------  157 (389)
                       +....||.|+.+..---.   ++           ...+++.+..+|+++|.+.++.....                   
T Consensus        98 -~~~~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~  162 (219)
T 1vlm_A           98 -LKDESFDFALMVTTICFV---DD-----------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKN  162 (219)
T ss_dssp             -SCTTCEEEEEEESCGGGS---SC-----------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTT
T ss_pred             -CCCCCeeEEEEcchHhhc---cC-----------HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcc
Confidence             345789999998642211   11           24688889999999999999854321                   


Q ss_pred             --CCCcccHHHHHhhCCcEEEEEeeCCCCCCCCCcc
Q 016441          158 --PFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNN  191 (389)
Q Consensus       158 --PY~sWnIe~LAa~aGL~L~~~~~F~~~~YPGY~h  191 (389)
                        .++.-.+.++.+++||..++.....  ..|.|..
T Consensus       163 ~~~~~~~~l~~~l~~~Gf~~~~~~~~~--~~~p~~~  196 (219)
T 1vlm_A          163 ARFFSTEELMDLMRKAGFEEFKVVQTL--FKHPSEL  196 (219)
T ss_dssp             CCCCCHHHHHHHHHHTTCEEEEEEEEC--CSCGGGC
T ss_pred             cccCCHHHHHHHHHHCCCeEEEEeccc--CCCCCcc
Confidence              1344567778999999998876554  2355554

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=96.58  E-value=0.0021  Score=62.15  Aligned_cols=141  Identities=17%  Similarity=0.071  Sum_probs=86.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeccccCCCCCCCCcCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG--TCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G--v~VlfgVDATkL~~~~~Lk~  100 (389)
                      +..+||=+|=|.=.|++.+|+. +  ..|  |+.|......+   .+++|++...-.+  +. +..-|+.++........
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~-g--a~V--~~VD~s~~al~---~a~~n~~~~gl~~~~v~-~i~~D~~~~l~~~~~~~  223 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAA-G--AEV--THVDASKKAIG---WAKENQVLAGLEQAPIR-WICEDAMKFIQREERRG  223 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT-T--CEE--EEECSCHHHHH---HHHHHHHHHTCTTSCEE-EECSCHHHHHHHHHHHT
T ss_pred             CCCcEEEcccccCHHHHHHHHc-C--CEE--EEEECCHHHHH---HHHHHHHHcCCCccceE-EEECcHHHHHHHHHhcC
Confidence            4679999999998999999874 2  344  45564444443   3677776653222  33 34447665321100014


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcc----cHHHHHhhCCcEEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW----NIKELAIGSSLSLI  176 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW----nIe~LAa~aGL~L~  176 (389)
                      .+||.||.|-|-.+. ++...   +....+.+..++..|..+|+++|.+.++.......+.-    -+.+.++++|..+.
T Consensus       224 ~~fD~Ii~dPP~~~~-~~~~~---~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          224 STYDIILTDPPKFGR-GTHGE---VWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             CCBSEEEECCCSEEE-CTTCC---EEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             CCceEEEECCccccC-CchHH---HHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            689999999997663 21110   11233456788999999999999977776554333321    23335557888775

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=96.56  E-value=0.0027  Score=62.60  Aligned_cols=137  Identities=18%  Similarity=0.205  Sum_probs=89.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=+|=|.=.++..|++.   +..|++.-.+  +...+   .++.|++... ..+.++ .-|+.++..    ....
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis--~~al~---~A~~n~~~~~-~~v~~~-~~D~~~~~~----~~~~  298 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM---GAEVVGVEDD--LASVL---SLQKGLEANA-LKAQAL-HSDVDEALT----EEAR  298 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT---TCEEEEEESB--HHHHH---HHHHHHHHTT-CCCEEE-ECSTTTTSC----TTCC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECC--HHHHH---HHHHHHHHcC-CCeEEE-Ecchhhccc----cCCC
Confidence            5679999999999999999986   2466665444  33332   2566665432 234444 357666432    2478


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcc------cHHHHHhhCCcEEE
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW------NIKELAIGSSLSLI  176 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW------nIe~LAa~aGL~L~  176 (389)
                      ||.|+.|.|-... +..        .......|++.+..+|+++|.+.|......+|..|      +++.+ +..||++.
T Consensus       299 fD~Ii~npp~~~~-~~~--------~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~~v~~l-~~~gF~Vl  368 (381)
T 3dmg_A          299 FDIIVTNPPFHVG-GAV--------ILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGAFQTL-KVAEYKVL  368 (381)
T ss_dssp             EEEEEECCCCCTT-CSS--------CCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSCCEEE-EESSSEEE
T ss_pred             eEEEEECCchhhc-ccc--------cHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhccEEEE-eCCCEEEE
Confidence            9999999986542 111        12356789999999999999999987776666443      23334 66778777


Q ss_pred             EEeeCCC
Q 016441          177 WCSEFKI  183 (389)
Q Consensus       177 ~~~~F~~  183 (389)
                      +......
T Consensus       369 ~a~~~~~  375 (381)
T 3dmg_A          369 FAEKRGR  375 (381)
T ss_dssp             EEECC--
T ss_pred             EEEEecc
Confidence            7655443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.56  E-value=0.012  Score=52.18  Aligned_cols=137  Identities=14%  Similarity=0.007  Sum_probs=86.2

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ..+..+||=||=|.=.++..|++.++  ..+++  .|-.+++.+   .++.+++...-. .+.+ ...|+.++..     
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~g--vD~s~~~l~---~a~~~~~~~~~~~~v~~-~~~d~~~~~~-----  100 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHG--ITGTG--IDMSSLFTA---QAKRRAEELGVSERVHF-IHNDAAGYVA-----  100 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEE--EESCHHHHH---HHHHHHHHTTCTTTEEE-EESCCTTCCC-----
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcC--CeEEE--EeCCHHHHH---HHHHHHHhcCCCcceEE-EECChHhCCc-----
Confidence            45678999999999999999998873  45655  453333333   244444332111 2333 3457777542     


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC--CCC-----------------CC
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT--TVP-----------------FS  160 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~--g~P-----------------Y~  160 (389)
                      ...||.|+.+..---.   .+           ...+++.+..+|+|||.+.|+-..  ..|                 ++
T Consensus       101 ~~~fD~V~~~~~~~~~---~~-----------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (256)
T 1nkv_A          101 NEKCDVAACVGATWIA---GG-----------FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLT  166 (256)
T ss_dssp             SSCEEEEEEESCGGGT---SS-----------SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCC
T ss_pred             CCCCCEEEECCChHhc---CC-----------HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCC
Confidence            4679999985432111   11           357888899999999999987421  111                 12


Q ss_pred             cccHHHHHhhCCcEEEEEeeCCCC
Q 016441          161 NWNIKELAIGSSLSLIWCSEFKIE  184 (389)
Q Consensus       161 sWnIe~LAa~aGL~L~~~~~F~~~  184 (389)
                      .-.+.++.+++||..++....+..
T Consensus       167 ~~~~~~~l~~aGf~~~~~~~~~~~  190 (256)
T 1nkv_A          167 LPGLVGAFDDLGYDVVEMVLADQE  190 (256)
T ss_dssp             HHHHHHHHHTTTBCCCEEEECCHH
T ss_pred             HHHHHHHHHHCCCeeEEEEeCCHH
Confidence            235677888999998876554433

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=96.55  E-value=0.021  Score=47.68  Aligned_cols=108  Identities=21%  Similarity=0.291  Sum_probs=72.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeccccCCCCCCCCcC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG--TCILHGVDATTMELHPDLR   99 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G--v~VlfgVDATkL~~~~~Lk   99 (389)
                      .+..+||=+|=|.=.++..|++.   +.+++++-.+.  +..+   .++.++....-.+  +.+ ...|+.+.     +.
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~--~~~~---~a~~~~~~~~~~~~~~~~-~~~d~~~~-----~~  116 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE---VKSTTMADINR--RAIK---LAKENIKLNNLDNYDIRV-VHSDLYEN-----VK  116 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCH--HHHH---HHHHHHHHTTCTTSCEEE-EECSTTTT-----CT
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCH--HHHH---HHHHHHHHcCCCccceEE-EECchhcc-----cc
Confidence            36779999999999999999876   35677765553  2222   2445554332222  333 34466552     22


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      ...||.|+.|.|....             ...+..+++.+..+|+++|.+.++....
T Consensus       117 ~~~~D~v~~~~~~~~~-------------~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          117 DRKYNKIITNPPIRAG-------------KEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             TSCEEEEEECCCSTTC-------------HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             cCCceEEEECCCcccc-------------hhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            4679999999885421             1235688999999999999999998765

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=96.54  E-value=0.0076  Score=51.51  Aligned_cols=129  Identities=19%  Similarity=0.178  Sum_probs=81.5

Q ss_pred             eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcce
Q 016441           26 QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDR  105 (389)
Q Consensus        26 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDr  105 (389)
                      +||=||=|.=.++..|++.  .+..+++  .|-..++.+   .++.++....-.+-.-....|+.++.    +....||.
T Consensus        46 ~vLdiG~G~G~~~~~l~~~--~~~~v~~--~D~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~  114 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQ--SDFSIRA--LDFSKHMNE---IALKNIADANLNDRIQIVQGDVHNIP----IEDNYADL  114 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHH--SEEEEEE--EESCHHHHH---HHHHHHHHTTCTTTEEEEECBTTBCS----SCTTCEEE
T ss_pred             EEEEECCCCCHHHHHHHHc--CCCeEEE--EECCHHHHH---HHHHHHHhccccCceEEEEcCHHHCC----CCcccccE
Confidence            8999999999999999987  2335555  453333333   24555544332222334556777754    34578999


Q ss_pred             EEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-------------CCcc----------
Q 016441          106 IIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-------------FSNW----------  162 (389)
Q Consensus       106 IIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-------------Y~sW----------  162 (389)
                      |+.+...--.   ++           ...+++.+..+|+|+|.+.|+-..+.+             +..|          
T Consensus       115 v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (219)
T 3dlc_A          115 IVSRGSVFFW---ED-----------VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQ  180 (219)
T ss_dssp             EEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSH
T ss_pred             EEECchHhhc---cC-----------HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhcccc
Confidence            9998742221   11           346888999999999999997432211             1112          


Q ss_pred             ----cHHHHHhhCCcEEEEEe
Q 016441          163 ----NIKELAIGSSLSLIWCS  179 (389)
Q Consensus       163 ----nIe~LAa~aGL~L~~~~  179 (389)
                          .+.++.+++||..++..
T Consensus       181 ~~~~~~~~~l~~aGf~~v~~~  201 (219)
T 3dlc_A          181 ENVERFQNVLDEIGISSYEII  201 (219)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEE
T ss_pred             CCHHHHHHHHHHcCCCeEEEE
Confidence                34567788899877764

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.53  E-value=0.012  Score=53.32  Aligned_cols=128  Identities=19%  Similarity=0.166  Sum_probs=82.9

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-H--hCCCEEEeccccCCCCCCCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-K--KLGTCILHGVDATTMELHPD   97 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-r--~~Gv~VlfgVDATkL~~~~~   97 (389)
                      ..+..+||-+|=|.=+++.+|++..+....+++.-.+  ++..+   .+++|++.. .  ...+.+ ...|+.++.    
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~g~~~~~v~~-~~~d~~~~~----  166 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQR--ADHAE---HARRNVSGCYGQPPDNWRL-VVSDLADSE----  166 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSC--HHHHH---HHHHHHHHHHTSCCTTEEE-ECSCGGGCC----
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHhcCCCCCcEEE-EECchHhcC----
Confidence            4567799999999999999999987655567665543  33332   366676654 2  123444 345777652    


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHH-HHHhhCCcEEE
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIK-ELAIGSSLSLI  176 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe-~LAa~aGL~L~  176 (389)
                      +....||.|+.|.|+.-                   .++..+..+|+++|.+.+...+..  ....+. .+.+..++...
T Consensus       167 ~~~~~~D~v~~~~~~~~-------------------~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~~~f~~~  225 (280)
T 1i9g_A          167 LPDGSVDRAVLDMLAPW-------------------EVLDAVSRLLVAGGVLMVYVATVT--QLSRIVEALRAKQCWTEP  225 (280)
T ss_dssp             CCTTCEEEEEEESSCGG-------------------GGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHHSSBCCC
T ss_pred             CCCCceeEEEECCcCHH-------------------HHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHhcCCcCCc
Confidence            33467999999877331                   568889999999999999875432  112222 23333666555


Q ss_pred             EEe
Q 016441          177 WCS  179 (389)
Q Consensus       177 ~~~  179 (389)
                      +..
T Consensus       226 ~~~  228 (280)
T 1i9g_A          226 RAW  228 (280)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=96.51  E-value=0.0031  Score=57.60  Aligned_cols=137  Identities=14%  Similarity=0.196  Sum_probs=87.1

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh---C---CCEEEeccccCC-CCCCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK---L---GTCILHGVDATT-MELHP   96 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~---~---Gv~VlfgVDATk-L~~~~   96 (389)
                      ..+||=||=|.=.|+..||+.+. ..++++.-..  +.+.+   .|.++++.|+.   .   ++.+ ...||.+ |... 
T Consensus        47 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis--~~~l~---~A~~~~~~l~~~~~~~~~nv~~-~~~d~~~~l~~~-  118 (235)
T 3ckk_A           47 QVEFADIGCGYGGLLVELSPLFP-DTLILGLEIR--VKVSD---YVQDRIRALRAAPAGGFQNIAC-LRSNAMKHLPNF-  118 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHGGGST-TSEEEEEESC--HHHHH---HHHHHHHHHHHSTTCCCTTEEE-EECCTTTCHHHH-
T ss_pred             CCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECC--HHHHH---HHHHHHHHHHHHHhcCCCeEEE-EECcHHHhhhhh-
Confidence            45799999999999999998763 4567765443  33333   36777777753   2   2333 4457765 3211 


Q ss_pred             CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEE
Q 016441           97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLI  176 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~  176 (389)
                       +....||+|+++||-.-.+-+.      .+.|.+...|++.+..+|++||.++++... ..|-.|-++.+.+..++...
T Consensus       119 -~~~~~~D~v~~~~~dp~~k~~h------~krr~~~~~~l~~~~~~LkpGG~l~~~td~-~~~~~~~~~~l~~~~~f~~~  190 (235)
T 3ckk_A          119 -FYKGQLTKMFFLFPDPHFKRTK------HKWRIISPTLLAEYAYVLRVGGLVYTITDV-LELHDWMCTHFEEHPLFERV  190 (235)
T ss_dssp             -CCTTCEEEEEEESCC-----------------CCCHHHHHHHHHHEEEEEEEEEEESC-HHHHHHHHHHHHTSTTEEEE
T ss_pred             -CCCcCeeEEEEeCCCchhhhhh------hhhhhhhHHHHHHHHHHCCCCCEEEEEeCC-HHHHHHHHHHHHHCCCcccc
Confidence             3456799999999854331110      112223467899999999999999988654 34777888888776655443

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=96.49  E-value=0.0064  Score=59.22  Aligned_cols=148  Identities=14%  Similarity=0.046  Sum_probs=93.5

Q ss_pred             ccccCCC-CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCC
Q 016441           16 KWIKHYS-SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTME   93 (389)
Q Consensus        16 K~~~~Ys-s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~   93 (389)
                      +++..+. ++.+||=+|=|.=.||+.||+. | ...++|.-.+ .+.+ +   .++.|++...-. ++.+ ..-|+.++.
T Consensus       209 ~~~~~~~~~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s-~~~l-~---~a~~n~~~n~~~~~v~~-~~~d~~~~~  280 (396)
T 2as0_A          209 LALEKWVQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKS-PRAI-E---TAKENAKLNGVEDRMKF-IVGSAFEEM  280 (396)
T ss_dssp             HHHGGGCCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESC-HHHH-H---HHHHHHHHTTCGGGEEE-EESCHHHHH
T ss_pred             HHHHHHhhCCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCC-HHHH-H---HHHHHHHHcCCCccceE-EECCHHHHH
Confidence            4444455 7889999999999999999875 3 4467776554 2222 2   356666542111 2333 334665532


Q ss_pred             CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-Ccc-c-HHHHHhh
Q 016441           94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNW-N-IKELAIG  170 (389)
Q Consensus        94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sW-n-Ie~LAa~  170 (389)
                      ....-...+||.||.|-|..+. ++.    .+.........++..+..+|+++|.+.++.+....- +.| + +.+.+.+
T Consensus       281 ~~~~~~~~~fD~Vi~dpP~~~~-~~~----~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~  355 (396)
T 2as0_A          281 EKLQKKGEKFDIVVLDPPAFVQ-HEK----DLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAK  355 (396)
T ss_dssp             HHHHHTTCCEEEEEECCCCSCS-SGG----GHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCCCEEEECCCCCCC-CHH----HHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            1100024689999999998774 332    244556677889999999999999999998876532 112 2 3346667


Q ss_pred             CCcEEE
Q 016441          171 SSLSLI  176 (389)
Q Consensus       171 aGL~L~  176 (389)
                      .|..+.
T Consensus       356 ~~~~~~  361 (396)
T 2as0_A          356 AGKFLK  361 (396)
T ss_dssp             TTEEEE
T ss_pred             cCCeEE
Confidence            776554

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=96.48  E-value=0.013  Score=54.05  Aligned_cols=135  Identities=13%  Similarity=0.162  Sum_probs=87.1

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh---CCCEEEeccccCCCCCCCCcCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK---LGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~---~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+||=||=|.=.++..|++.   +.++++.-++  .++.+   .+++++.....   ..+. +..-|+.++..     .
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~~~v~-~~~~d~~~~~~-----~  148 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL---GWEVTALELS--TSVLA---AFRKRLAEAPADVRDRCT-LVQGDMSAFAL-----D  148 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT---TCCEEEEESC--HHHHH---HHHHHHHTSCHHHHTTEE-EEECBTTBCCC-----S
T ss_pred             CCcEEEEeccCCHHHHHHHHc---CCeEEEEECC--HHHHH---HHHHHHhhcccccccceE-EEeCchhcCCc-----C
Confidence            348999999999999999986   3467666544  23332   13333332110   2233 34557777642     4


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC----------------------
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP----------------------  158 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P----------------------  158 (389)
                      ..||.||+.+.-...           ...+-+..+++.+..+|+|+|.+.|+......                      
T Consensus       149 ~~fD~v~~~~~~~~~-----------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  217 (299)
T 3g2m_A          149 KRFGTVVISSGSINE-----------LDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVL  217 (299)
T ss_dssp             CCEEEEEECHHHHTT-----------SCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------C
T ss_pred             CCcCEEEECCccccc-----------CCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEE
Confidence            789999865321111           01233568899999999999999998754310                      


Q ss_pred             ----------------------------------CCcccHHHHHhhCCcEEEEEeeCCC
Q 016441          159 ----------------------------------FSNWNIKELAIGSSLSLIWCSEFKI  183 (389)
Q Consensus       159 ----------------------------------Y~sWnIe~LAa~aGL~L~~~~~F~~  183 (389)
                                                        |+.-.++.+.+++||.+++..+|..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~  276 (299)
T 3g2m_A          218 HVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFAS  276 (299)
T ss_dssp             CEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECT
T ss_pred             EEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCC
Confidence                                              2334577899999999999988763

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.47  E-value=0.063  Score=45.96  Aligned_cols=108  Identities=16%  Similarity=0.191  Sum_probs=71.0

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeccccCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG--TCILHGVDATTME   93 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G--v~VlfgVDATkL~   93 (389)
                      +++....+..+||=||=|.=.++..|++.   +..+++.-.+  .++.+          ..++.|  -.-+...|+.++ 
T Consensus        39 ~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s--~~~~~----------~a~~~~~~~~~~~~~d~~~~-  102 (218)
T 3ou2_A           39 ERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGS--AEMIA----------EAGRHGLDNVEFRQQDLFDW-  102 (218)
T ss_dssp             HHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESC--HHHHH----------HHGGGCCTTEEEEECCTTSC-
T ss_pred             HHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCC--HHHHH----------HHHhcCCCCeEEEecccccC-
Confidence            45566777889999999999999999987   3466655443  22222          222223  123344577765 


Q ss_pred             CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441           94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus        94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                          +....||.|+.++----.            ....+..+++.+..+|+++|.+.++...
T Consensus       103 ----~~~~~~D~v~~~~~l~~~------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          103 ----TPDRQWDAVFFAHWLAHV------------PDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             ----CCSSCEEEEEEESCGGGS------------CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ----CCCCceeEEEEechhhcC------------CHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence                345789999998621111            1234568899999999999999888543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=96.47  E-value=0.0048  Score=60.53  Aligned_cols=159  Identities=11%  Similarity=0.015  Sum_probs=95.3

Q ss_pred             cccccCC-CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCEEEeccccCC
Q 016441           15 EKWIKHY-SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL--GTCILHGVDATT   91 (389)
Q Consensus        15 ~K~~~~Y-ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~--Gv~VlfgVDATk   91 (389)
                      .+++..+ ..+.+||=+|=|.=.||+.+|+. + +..+++.-.+.  +..+   .|+.|++...-.  .+.+ ..-||.+
T Consensus       203 ~~~~~~~~~~~~~VLDl~cGtG~~sl~la~~-g-a~~V~~vD~s~--~al~---~A~~N~~~n~~~~~~v~~-~~~D~~~  274 (385)
T 2b78_A          203 RNELINGSAAGKTVLNLFSYTAAFSVAAAMG-G-AMATTSVDLAK--RSRA---LSLAHFEANHLDMANHQL-VVMDVFD  274 (385)
T ss_dssp             HHHHHHTTTBTCEEEEETCTTTHHHHHHHHT-T-BSEEEEEESCT--THHH---HHHHHHHHTTCCCTTEEE-EESCHHH
T ss_pred             HHHHHHHhcCCCeEEEEeeccCHHHHHHHHC-C-CCEEEEEECCH--HHHH---HHHHHHHHcCCCccceEE-EECCHHH
Confidence            4555555 77889999999988999999874 2 34566654443  2222   366676543211  2333 4447655


Q ss_pred             CCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC--CcccHH-HHH
Q 016441           92 MELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF--SNWNIK-ELA  168 (389)
Q Consensus        92 L~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY--~sWnIe-~LA  168 (389)
                      .-....-.+.+||.||.|-|-.+. ++...    ..-.+.+..++..|..+|+|+|.+.++.+....-  ..|++. +.|
T Consensus       275 ~l~~~~~~~~~fD~Ii~DPP~~~~-~~~~~----~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~  349 (385)
T 2b78_A          275 YFKYARRHHLTYDIIIIDPPSFAR-NKKEV----FSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGF  349 (385)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCC------CC----CCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCccEEEECCCCCCC-ChhhH----HHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHH
Confidence            211100124589999999998752 21111    1123345667888999999999999998766431  123443 466


Q ss_pred             hhCCcEEEEEeeCCCCCCC
Q 016441          169 IGSSLSLIWCSEFKIEDYP  187 (389)
Q Consensus       169 a~aGL~L~~~~~F~~~~YP  187 (389)
                      +++|..+++ ..-.+.|+|
T Consensus       350 ~~~g~~~~~-~~~~~~D~p  367 (385)
T 2b78_A          350 GKQKHTYLD-LQQLPSDFA  367 (385)
T ss_dssp             TTCCCEEEE-EECCCTTSC
T ss_pred             HHcCCcEEE-eCCCCCCCC
Confidence            778888443 455666676

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=96.46  E-value=0.046  Score=47.88  Aligned_cols=113  Identities=15%  Similarity=0.234  Sum_probs=72.2

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      +++....+..+||=||=|.=.++..|++.+. +..+++.-.+  +.+.+.   +++++   +..+-.-+...|+.++.. 
T Consensus        37 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~~---a~~~~---~~~~~~~~~~~d~~~~~~-  106 (234)
T 3dtn_A           37 SIASVDTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMS--EKMLEI---AKNRF---RGNLKVKYIEADYSKYDF-  106 (234)
T ss_dssp             HTCCCSCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESC--HHHHHH---HHHHT---CSCTTEEEEESCTTTCCC-
T ss_pred             HHhhcCCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECC--HHHHHH---HHHhh---ccCCCEEEEeCchhccCC-
Confidence            3444456778999999999999999998862 4566665443  222221   33332   223322334557777643 


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                         . ..||.|+.++.---.   .+         .-...+++.+..+|+|+|.+.++-.
T Consensus       107 ---~-~~fD~v~~~~~l~~~---~~---------~~~~~~l~~~~~~LkpgG~l~~~~~  149 (234)
T 3dtn_A          107 ---E-EKYDMVVSALSIHHL---ED---------EDKKELYKRSYSILKESGIFINADL  149 (234)
T ss_dssp             ---C-SCEEEEEEESCGGGS---CH---------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---C-CCceEEEEeCccccC---CH---------HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence               2 789999998653322   11         1234688889999999999998753

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=96.46  E-value=0.011  Score=54.46  Aligned_cols=135  Identities=13%  Similarity=0.031  Sum_probs=90.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ....+||=||=|.=..+..||..++ ...|  |..|..+...+   -++.|++.+.-.+++++++ |+.++.... ....
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~-~~~v--~~vD~s~~~~~---~a~~~~~~~~l~~v~~~~~-d~~~~~~~~-~~~~  150 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRP-ELEL--VLVDATRKKVA---FVERAIEVLGLKGARALWG-RAEVLAREA-GHRE  150 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCT-TCEE--EEEESCHHHHH---HHHHHHHHHTCSSEEEEEC-CHHHHTTST-TTTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCC-CCEE--EEEECCHHHHH---HHHHHHHHhCCCceEEEEC-cHHHhhccc-ccCC
Confidence            4678999999999999999998763 3455  45564444443   3778888776445666554 777664321 1236


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      .||.|+.+-  +.     +           +..++..+..+|+++|.+.+.......-..-.+...++..|+.+.+..++
T Consensus       151 ~fD~I~s~a--~~-----~-----------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~  212 (249)
T 3g89_A          151 AYARAVARA--VA-----P-----------LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLAL  212 (249)
T ss_dssp             CEEEEEEES--SC-----C-----------HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred             CceEEEECC--cC-----C-----------HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEe
Confidence            799999862  11     1           35788899999999999876542211112234556667789999998887


Q ss_pred             C
Q 016441          182 K  182 (389)
Q Consensus       182 ~  182 (389)
                      .
T Consensus       213 ~  213 (249)
T 3g89_A          213 Q  213 (249)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.46  E-value=0.0047  Score=51.97  Aligned_cols=123  Identities=15%  Similarity=0.116  Sum_probs=73.8

Q ss_pred             cccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCC
Q 016441           17 WIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELH   95 (389)
Q Consensus        17 ~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~   95 (389)
                      ++....++.+||=+|=|.=.++..+++. + ...+++.-.+.  ++.+   .++.|++...- ..+.+ +.-|+.+....
T Consensus        38 ~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~--~~~~---~a~~~~~~~~~~~~~~~-~~~d~~~~~~~  109 (187)
T 2fhp_A           38 MIGPYFDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNF--AALK---VIKENIAITKEPEKFEV-RKMDANRALEQ  109 (187)
T ss_dssp             HHCSCCSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCH--HHHH---HHHHHHHHHTCGGGEEE-EESCHHHHHHH
T ss_pred             HHHhhcCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCH--HHHH---HHHHHHHHhCCCcceEE-EECcHHHHHHH
Confidence            4445567889999999998888888873 2 35677766652  2332   35666655431 12333 44566653211


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCC
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFS  160 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~  160 (389)
                      .......||.|+.|.|..-    .+       ....+...  .+..+|+++|.+.++........
T Consensus       110 ~~~~~~~fD~i~~~~~~~~----~~-------~~~~~~~l--~~~~~L~~gG~l~~~~~~~~~~~  161 (187)
T 2fhp_A          110 FYEEKLQFDLVLLDPPYAK----QE-------IVSQLEKM--LERQLLTNEAVIVCETDKTVKLP  161 (187)
T ss_dssp             HHHTTCCEEEEEECCCGGG----CC-------HHHHHHHH--HHTTCEEEEEEEEEEEETTCCCC
T ss_pred             HHhcCCCCCEEEECCCCCc----hh-------HHHHHHHH--HHhcccCCCCEEEEEeCCccccc
Confidence            0011467999999999331    11       11122222  14789999999999988765443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.40  E-value=0.0083  Score=52.64  Aligned_cols=108  Identities=13%  Similarity=0.126  Sum_probs=73.1

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-----HhCCCEEEeccccCCCCCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-----KKLGTCILHGVDATTMELH   95 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-----r~~Gv~VlfgVDATkL~~~   95 (389)
                      ..+..+||=||=|.=.++..|++..+....+++.-.+  +.+.+   .++.|++..     ....+.+. ..|++...  
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~~~v~~~-~~d~~~~~--  146 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHI--KELVD---DSVNNVRKDDPTLLSSGRVQLV-VGDGRMGY--  146 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESC--HHHHH---HHHHHHHHHCTHHHHTSSEEEE-ESCGGGCC--
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCC--HHHHH---HHHHHHHhhcccccCCCcEEEE-ECCcccCc--
Confidence            4567899999999999999999887644567766544  33333   255565552     23345544 34776432  


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP  158 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  158 (389)
                        .....||+|+.+.|...                    ++..+..+|+++|.+.++..+..+
T Consensus       147 --~~~~~fD~i~~~~~~~~--------------------~~~~~~~~LkpgG~lv~~~~~~~~  187 (226)
T 1i1n_A          147 --AEEAPYDAIHVGAAAPV--------------------VPQALIDQLKPGGRLILPVGPAGG  187 (226)
T ss_dssp             --GGGCCEEEEEECSBBSS--------------------CCHHHHHTEEEEEEEEEEESCTTS
T ss_pred             --ccCCCcCEEEECCchHH--------------------HHHHHHHhcCCCcEEEEEEecCCC
Confidence              23467999999887532                    234677899999999999987654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=96.39  E-value=0.0042  Score=60.98  Aligned_cols=136  Identities=12%  Similarity=0.156  Sum_probs=86.1

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEE-EeccccCCCCCCCCcCCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCI-LHGVDATTMELHPDLRTR  101 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~V-lfgVDATkL~~~~~Lk~~  101 (389)
                      ..+||=+|=|.=.|+..|++.. .+..|++.-.+  +.+.+   .++.|++...-.+ +.| .+.-|+.+     .+...
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s--~~al~---~Ar~n~~~ngl~~~~~v~~~~~D~~~-----~~~~~  291 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDES--PMAVA---SSRLNVETNMPEALDRCEFMINNALS-----GVEPF  291 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESC--HHHHH---HHHHHHHHHCGGGGGGEEEEECSTTT-----TCCTT
T ss_pred             CCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECc--HHHHH---HHHHHHHHcCCCcCceEEEEechhhc-----cCCCC
Confidence            3789999999999999999875 34567665544  33332   2566665532111 122 23345544     23457


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcc------cHHHHHhhCCcEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW------NIKELAIGSSLSL  175 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW------nIe~LAa~aGL~L  175 (389)
                      +||.|+.|.|.-.....         ...+...||+.+..+|+++|.+.|......+|..|      +++.+|+..||++
T Consensus       292 ~fD~Ii~nppfh~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg~~~~~a~~~~F~V  362 (375)
T 4dcm_A          292 RFNAVLCNPPFHQQHAL---------TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVV  362 (375)
T ss_dssp             CEEEEEECCCC----------------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHSCCEEEEECSSEEE
T ss_pred             CeeEEEECCCcccCccc---------CHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcCCEEEEeeCCCEEE
Confidence            89999999995321111         11234579999999999999999987766666543      3444566677777


Q ss_pred             EEEe
Q 016441          176 IWCS  179 (389)
Q Consensus       176 ~~~~  179 (389)
                      .+..
T Consensus       363 ~~~~  366 (375)
T 4dcm_A          363 LKAV  366 (375)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            7654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=96.38  E-value=0.018  Score=49.96  Aligned_cols=116  Identities=14%  Similarity=0.199  Sum_probs=81.3

Q ss_pred             cccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCC
Q 016441           17 WIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHP   96 (389)
Q Consensus        17 ~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~   96 (389)
                      ++.+..+..+||=||=|.=.++..|+      ..+++.-.+..                    ++.+. ..|+.++.   
T Consensus        61 ~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~--------------------~~~~~-~~d~~~~~---  110 (215)
T 2zfu_A           61 DLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL--------------------DPRVT-VCDMAQVP---  110 (215)
T ss_dssp             HHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS--------------------STTEE-ESCTTSCS---
T ss_pred             HHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC--------------------CceEE-EeccccCC---
Confidence            34455677899999999877777662      46777666543                    34443 34666643   


Q ss_pred             CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEE
Q 016441           97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLI  176 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~  176 (389)
                       +....||.|+.++..- .   ++           ...+++.+..+|+++|.+.|+-......+.-.+.++.+++||.++
T Consensus       111 -~~~~~fD~v~~~~~l~-~---~~-----------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~  174 (215)
T 2zfu_A          111 -LEDESVDVAVFCLSLM-G---TN-----------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIV  174 (215)
T ss_dssp             -CCTTCEEEEEEESCCC-S---SC-----------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEE
T ss_pred             -CCCCCEeEEEEehhcc-c---cC-----------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEE
Confidence             3457899999987642 1   22           347888899999999999997654433355678889999999988


Q ss_pred             EE
Q 016441          177 WC  178 (389)
Q Consensus       177 ~~  178 (389)
                      ..
T Consensus       175 ~~  176 (215)
T 2zfu_A          175 SK  176 (215)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.37  E-value=0.011  Score=60.42  Aligned_cols=146  Identities=14%  Similarity=0.160  Sum_probs=100.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=+|=|-=..|..||+..+....|+|.-.+  ....+   .+.+|++.+.-. +.++ .-|++++...   ...
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis--~~~l~---~a~~n~~r~G~~-v~~~-~~Da~~l~~~---~~~  169 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVD--GKRVR---GLLENVERWGAP-LAVT-QAPPRALAEA---FGT  169 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSC--HHHHH---HHHHHHHHHCCC-CEEE-CSCHHHHHHH---HCS
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHcCCe-EEEE-ECCHHHhhhh---ccc
Confidence            467899999999999999999887654567765444  22222   367777765433 4443 4577776421   136


Q ss_pred             CcceEEEcCCCCCCCCC----cc-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhhC
Q 016441          102 KFDRIIFNFPHAGFYGK----ED-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIGS  171 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gk----ED-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~a  171 (389)
                      .||+|+.|=|..|. |.    .+     ....+.....+-..++.+|..+|++||.+..+.|+-.|- +.-.|..+.++.
T Consensus       170 ~FD~Il~D~PcSg~-G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~  248 (464)
T 3m6w_A          170 YFHRVLLDAPCSGE-GMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAH  248 (464)
T ss_dssp             CEEEEEEECCCCCG-GGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             cCCEEEECCCcCCc-cccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHC
Confidence            79999999999873 21    11     112345556677889999999999999999999987664 556666666555


Q ss_pred             -CcEEEEE
Q 016441          172 -SLSLIWC  178 (389)
Q Consensus       172 -GL~L~~~  178 (389)
                       ++.++..
T Consensus       249 ~~~~l~~~  256 (464)
T 3m6w_A          249 PEFRLEDA  256 (464)
T ss_dssp             TTEEEECC
T ss_pred             CCcEEEec
Confidence             6776653

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=96.35  E-value=0.0068  Score=54.61  Aligned_cols=139  Identities=11%  Similarity=0.085  Sum_probs=89.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ...+||=||=|.=.++..||+... ..+++|.-..  .+..+   .+..|++...-.++. +...||..+-.. .+....
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s--~~~l~---~a~~~~~~~~l~nv~-~~~~Da~~~l~~-~~~~~~  105 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVH--SPGVG---ACLASAHEEGLSNLR-VMCHDAVEVLHK-MIPDNS  105 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSC--HHHHH---HHHHHHHHTTCSSEE-EECSCHHHHHHH-HSCTTC
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEec--HHHHH---HHHHHHHHhCCCcEE-EEECCHHHHHHH-HcCCCC
Confidence            456899999999999999998763 4567765443  33332   255555443222333 355677764110 134578


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEE
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLI  176 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~  176 (389)
                      ||.|+.|||-.-.+....      ..|.+-..|++.+..+|+|||.++|..... +|-.|-.+.+.+..++..+
T Consensus       106 ~d~v~~~~~~p~~~~~~~------~rr~~~~~~l~~~~r~LkpGG~l~i~td~~-~~~~~~~~~~~~~~~~~~~  172 (218)
T 3dxy_A          106 LRMVQLFFPDPWHKARHN------KRRIVQVPFAELVKSKLQLGGVFHMATDWE-PYAEHMLEVMSSIDGYKNL  172 (218)
T ss_dssp             EEEEEEESCCCCCSGGGG------GGSSCSHHHHHHHHHHEEEEEEEEEEESCH-HHHHHHHHHHHTSTTEEEC
T ss_pred             hheEEEeCCCCccchhhh------hhhhhhHHHHHHHHHHcCCCcEEEEEeCCH-HHHHHHHHHHHhCCCcccc
Confidence            999999987553211111      112223469999999999999999886443 4777888888877776543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=96.34  E-value=0.013  Score=52.52  Aligned_cols=135  Identities=16%  Similarity=0.079  Sum_probs=86.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..||.... +..++|.  |..++..+   -++.|++.+.-.++.++.+ |+.++..... ...
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~v--D~s~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~-~~~  140 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIV--DSLNKRIT---FLEKLSEALQLENTTFCHD-RAETFGQRKD-VRE  140 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEE--ESCHHHHH---HHHHHHHHHTCSSEEEEES-CHHHHTTCTT-TTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEE--eCCHHHHH---HHHHHHHHcCCCCEEEEec-cHHHhccccc-ccC
Confidence            4678999999998888888887542 3456554  54333333   2666776664335666654 7766542111 135


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      .||.|+.+.  +     .+           +..+++.+..+|+++|.+.+.......-..-.+.+..+..|+.+.+...|
T Consensus       141 ~fD~V~~~~--~-----~~-----------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~  202 (240)
T 1xdz_A          141 SYDIVTARA--V-----AR-----------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSF  202 (240)
T ss_dssp             CEEEEEEEC--C-----SC-----------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CccEEEEec--c-----CC-----------HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEE
Confidence            799999865  1     11           56889999999999999987632211111123445667889999887766


Q ss_pred             C
Q 016441          182 K  182 (389)
Q Consensus       182 ~  182 (389)
                      .
T Consensus       203 ~  203 (240)
T 1xdz_A          203 K  203 (240)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=96.31  E-value=0.0032  Score=60.18  Aligned_cols=132  Identities=16%  Similarity=0.255  Sum_probs=83.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ...+||=||=|.=.++..|++.. ....+++.-.+  ..+.+   .++.|++... ..+.+ +..|+....      ...
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s--~~~l~---~a~~~~~~~~-~~~~~-~~~d~~~~~------~~~  261 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVS--APAVE---ASRATLAANG-VEGEV-FASNVFSEV------KGR  261 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESB--HHHHH---HHHHHHHHTT-CCCEE-EECSTTTTC------CSC
T ss_pred             CCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECC--HHHHH---HHHHHHHHhC-CCCEE-EEccccccc------cCC
Confidence            35689999999999999998874 23356554433  33332   2555554321 22444 445554421      467


Q ss_pred             cceEEEcCCCC-CCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcc------cHHHHHhhCCcEE
Q 016441          103 FDRIIFNFPHA-GFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW------NIKELAIGSSLSL  175 (389)
Q Consensus       103 FDrIIFNFPH~-G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW------nIe~LAa~aGL~L  175 (389)
                      ||.|+.|.|.- |.          ..+......|++.+..+|+++|.+.|......||..|      +++.+++..|+++
T Consensus       262 fD~Iv~~~~~~~g~----------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~~~~~~~~~gf~v  331 (343)
T 2pjd_A          262 FDMIISNPPFHDGM----------QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKV  331 (343)
T ss_dssp             EEEEEECCCCCSSS----------HHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSCCEEEEECSSEEE
T ss_pred             eeEEEECCCcccCc----------cCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCceEEEeeCCCEEE
Confidence            99999999943 32          2344567899999999999999999988777665432      1222444555555


Q ss_pred             EEE
Q 016441          176 IWC  178 (389)
Q Consensus       176 ~~~  178 (389)
                      .+.
T Consensus       332 ~~~  334 (343)
T 2pjd_A          332 YRA  334 (343)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=96.29  E-value=0.0031  Score=61.53  Aligned_cols=159  Identities=18%  Similarity=0.145  Sum_probs=96.2

Q ss_pred             cccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-C-CCEEEeccccCCC
Q 016441           15 EKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-L-GTCILHGVDATTM   92 (389)
Q Consensus        15 ~K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~-Gv~VlfgVDATkL   92 (389)
                      .+++..+.++.+||=+|=|.=.||+.+|+. | +..++|.-.+  ++..+   .++.|++...- . .+.+ ..-|+.++
T Consensus       212 ~~~l~~~~~~~~VLDl~cG~G~~sl~la~~-g-~~~V~~vD~s--~~al~---~a~~n~~~ngl~~~~v~~-~~~D~~~~  283 (396)
T 3c0k_A          212 RLATRRYVENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTS--QEALD---IARQNVELNKLDLSKAEF-VRDDVFKL  283 (396)
T ss_dssp             HHHHHHHCTTCEEEEESCTTCSHHHHHHHT-T-CSEEEEEESC--HHHHH---HHHHHHHHTTCCGGGEEE-EESCHHHH
T ss_pred             HHHHHHhhCCCeEEEeeccCCHHHHHHHHC-C-CCEEEEEECC--HHHHH---HHHHHHHHcCCCccceEE-EECCHHHH
Confidence            455666678889999998888899999875 2 3466665544  22332   35667654321 1 2333 34477654


Q ss_pred             CCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-Cc-cc-HHHHHh
Q 016441           93 ELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SN-WN-IKELAI  169 (389)
Q Consensus        93 ~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~s-Wn-Ie~LAa  169 (389)
                      -....-...+||.||.|-|-.+. ++.+    +......+..++..+..+|+++|.+.++.+....- +. .+ +.+.+.
T Consensus       284 ~~~~~~~~~~fD~Ii~dpP~~~~-~~~~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~  358 (396)
T 3c0k_A          284 LRTYRDRGEKFDVIVMDPPKFVE-NKSQ----LMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAI  358 (396)
T ss_dssp             HHHHHHTTCCEEEEEECCSSTTT-CSSS----SSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCEEEECCCCCCC-ChhH----HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Confidence            21100014689999999998774 3221    12223456688899999999999999998876532 12 22 233556


Q ss_pred             hCC--cEEEEEeeCCCCCCC
Q 016441          170 GSS--LSLIWCSEFKIEDYP  187 (389)
Q Consensus       170 ~aG--L~L~~~~~F~~~~YP  187 (389)
                      ++|  +.++... -.+.+||
T Consensus       359 ~~g~~~~~i~~~-~~~~d~p  377 (396)
T 3c0k_A          359 DAGRDVQFIEQF-RQAADHP  377 (396)
T ss_dssp             HHTCCEEEEEEE-ECCTTSC
T ss_pred             HcCCeEEEEEEC-CCCCCCC
Confidence            666  4555433 2445555

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.28  E-value=0.098  Score=48.47  Aligned_cols=137  Identities=12%  Similarity=0.090  Sum_probs=86.2

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHH--HHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYD--DVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL   98 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSee--eL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L   98 (389)
                      ..++++||=+|=|.=.++..||+..+....|+|.-+....  .+.+   .++      +..++.++. -||+.......+
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~---~a~------~r~nv~~i~-~Da~~~~~~~~~  143 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLL---VAQ------RRPNIFPLL-ADARFPQSYKSV  143 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHH---HHH------HCTTEEEEE-CCTTCGGGTTTT
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHH---Hhh------hcCCeEEEE-cccccchhhhcc
Confidence            4578999999999999999999887655577776554221  1111   111      123555544 588875432222


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC------CCCcc-cHHHHHhhC
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV------PFSNW-NIKELAIGS  171 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------PY~sW-nIe~LAa~a  171 (389)
                       ...||+|+.|.|+.      ++          ..-+...+..+|++||.+.++++.+.      |...- ++++..+++
T Consensus       144 -~~~~D~I~~d~a~~------~~----------~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~  206 (232)
T 3id6_C          144 -VENVDVLYVDIAQP------DQ----------TDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENS  206 (232)
T ss_dssp             -CCCEEEEEECCCCT------TH----------HHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHT
T ss_pred             -ccceEEEEecCCCh------hH----------HHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHC
Confidence             35799999998862      11          11234567778999999999976542      33222 344444567


Q ss_pred             CcEEEEEeeCCCC
Q 016441          172 SLSLIWCSEFKIE  184 (389)
Q Consensus       172 GL~L~~~~~F~~~  184 (389)
                      ||.+.+.....|-
T Consensus       207 gf~~~~~~~l~p~  219 (232)
T 3id6_C          207 NFETIQIINLDPY  219 (232)
T ss_dssp             TEEEEEEEECTTT
T ss_pred             CCEEEEEeccCCC
Confidence            9999998876544

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=96.28  E-value=0.044  Score=50.85  Aligned_cols=135  Identities=13%  Similarity=0.086  Sum_probs=84.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      .+..+||=||=|.=.++..|++.+. ...++++  |-. .+.+   .+++++....-. .+++. ..|+.++.    +. 
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~--D~~-~~~~---~a~~~~~~~~~~~~v~~~-~~d~~~~~----~~-  230 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGV--DWA-SVLE---VAKENARIQGVASRYHTI-AGSAFEVD----YG-  230 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEE--ECH-HHHH---HHHHHHHHHTCGGGEEEE-ESCTTTSC----CC-
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEE--ecH-HHHH---HHHHHHHhcCCCcceEEE-ecccccCC----CC-
Confidence            6678999999999999999999873 3455555  543 4443   255555543211 24433 34666542    22 


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC------------------------
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT------------------------  156 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g------------------------  156 (389)
                      ..||.|+.+..--.. .           ..-...+++.+..+|+|+|.+.|.-...                        
T Consensus       231 ~~~D~v~~~~~l~~~-~-----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (335)
T 2r3s_A          231 NDYDLVLLPNFLHHF-D-----------VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNG  298 (335)
T ss_dssp             SCEEEEEEESCGGGS-C-----------HHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSC
T ss_pred             CCCcEEEEcchhccC-C-----------HHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCC
Confidence            239999996543221 1           1123467888899999999888764321                        


Q ss_pred             CCCCcccHHHHHhhCCcEEEEEeeC
Q 016441          157 VPFSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       157 ~PY~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      ..++.=++.++.+++||..++..+.
T Consensus       299 ~~~t~~~~~~ll~~aGf~~~~~~~~  323 (335)
T 2r3s_A          299 DAYTFAEYESMFSNAGFSHSQLHSL  323 (335)
T ss_dssp             CCCCHHHHHHHHHHTTCSEEEEECC
T ss_pred             CcCCHHHHHHHHHHCCCCeeeEEEC
Confidence            1122234566788999998887654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=96.27  E-value=0.014  Score=53.04  Aligned_cols=131  Identities=16%  Similarity=0.174  Sum_probs=87.3

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeccccCCCCCCCCcCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT---CILHGVDATTMELHPDLRT  100 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv---~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+||=||=|.=.++..|++.   +..++++-.+  +++.+   .+..++   +..|.   .-+...|+.++..   +..
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s--~~~~~---~a~~~~---~~~~~~~~v~~~~~d~~~~~~---~~~  134 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER---GHQVILCDLS--AQMID---RAKQAA---EAKGVSDNMQFIHCAAQDVAS---HLE  134 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHH---HC-CCGGGEEEEESCGGGTGG---GCS
T ss_pred             CCEEEEeCCcchHHHHHHHHC---CCEEEEEECC--HHHHH---HHHHHH---HhcCCCcceEEEEcCHHHhhh---hcC
Confidence            568999999999999999886   3466665443  33322   133333   33342   2344557777642   235


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC------------------------
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT------------------------  156 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g------------------------  156 (389)
                      ..||.|+.+...--.   ++           ...+++.+..+|+|+|.+.|+..+.                        
T Consensus       135 ~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (285)
T 4htf_A          135 TPVDLILFHAVLEWV---AD-----------PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKK  200 (285)
T ss_dssp             SCEEEEEEESCGGGC---SC-----------HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC-
T ss_pred             CCceEEEECchhhcc---cC-----------HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccc
Confidence            789999998654322   11           1468999999999999999876311                        


Q ss_pred             -------CCCCcccHHHHHhhCCcEEEEEeeCC
Q 016441          157 -------VPFSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       157 -------~PY~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                             .+++.-.+..+.+++||.+++...+.
T Consensus       201 ~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~~  233 (285)
T 4htf_A          201 KRTLSPDYPRDPTQVYLWLEEAGWQIMGKTGVR  233 (285)
T ss_dssp             ---CCCSCCBCHHHHHHHHHHTTCEEEEEEEES
T ss_pred             cccCCCCCCCCHHHHHHHHHHCCCceeeeeeEE
Confidence                   12334478889999999999887764

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=96.24  E-value=0.039  Score=53.45  Aligned_cols=139  Identities=14%  Similarity=0.119  Sum_probs=90.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh--------CCCEEEeccccCCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK--------LGTCILHGVDATTME   93 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~--------~Gv~VlfgVDATkL~   93 (389)
                      .+..+||=||=|.=.++..|++.++....++++-..  .++.+   .+.+|++.+..        .++.++. -|+.++.
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~l~---~a~~~~~~~~~~~~g~~~~~~v~~~~-~d~~~l~  155 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDML--DNQLE---VARKYVEYHAEKFFGSPSRSNVRFLK-GFIENLA  155 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECC--HHHHH---HHHHTHHHHHHHHHSSTTCCCEEEEE-SCTTCGG
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECC--HHHHH---HHHHHHHHhhhhcccccCCCceEEEE-ccHHHhh
Confidence            467799999999999999999988655567766543  22332   25555554421        2344443 4787763


Q ss_pred             CC--CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC--------------
Q 016441           94 LH--PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV--------------  157 (389)
Q Consensus        94 ~~--~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~--------------  157 (389)
                      ..  ..+....||.|+.|+...-.   .|           ...+++.+..+|+|||.+.++-....              
T Consensus       156 ~~~~~~~~~~~fD~V~~~~~l~~~---~d-----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~  221 (383)
T 4fsd_A          156 TAEPEGVPDSSVDIVISNCVCNLS---TN-----------KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILY  221 (383)
T ss_dssp             GCBSCCCCTTCEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHH
T ss_pred             hcccCCCCCCCEEEEEEccchhcC---CC-----------HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHh
Confidence            22  13456789999999764432   12           24788999999999999998742211              


Q ss_pred             ------CCCcccHHHHHhhCCcEEEEEee
Q 016441          158 ------PFSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       158 ------PY~sWnIe~LAa~aGL~L~~~~~  180 (389)
                            .+..-.+.++.+++||..++...
T Consensus       222 ~~~~~~~~~~~~~~~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          222 GECLGGALYLEDFRRLVAEAGFRDVRLVS  250 (383)
T ss_dssp             HTTCTTCCBHHHHHHHHHHTTCCCEEEEE
T ss_pred             hcccccCCCHHHHHHHHHHCCCceEEEEe
Confidence                  12224566788899998665543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.21  E-value=0.03  Score=57.07  Aligned_cols=140  Identities=15%  Similarity=0.131  Sum_probs=94.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ++++||=+|=|-=++|..||+..+....|+|.-.+. + ..+   .+.+|++.+.-.++.| ..-|++++...   ....
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~-~-~l~---~~~~n~~r~g~~nv~~-~~~D~~~~~~~---~~~~  187 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSA-S-RVK---VLHANISRCGISNVAL-THFDGRVFGAA---VPEM  187 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSH-H-HHH---HHHHHHHHHTCCSEEE-ECCCSTTHHHH---STTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCH-H-HHH---HHHHHHHHcCCCcEEE-EeCCHHHhhhh---cccc
Confidence            678999999999999999998875445677765542 2 222   3677777654334444 44588776421   1357


Q ss_pred             cceEEEcCCCCCCCCC----cc-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhhCC
Q 016441          103 FDRIIFNFPHAGFYGK----ED-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIGSS  172 (389)
Q Consensus       103 FDrIIFNFPH~G~~gk----ED-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~aG  172 (389)
                      ||+|+.|=|..|. |.    .+     ....+.....+-..++.+|..+|++||.+.++.|+-.|. +.-.|..+.++.+
T Consensus       188 fD~Il~D~PcSg~-G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~  266 (479)
T 2frx_A          188 FDAILLDAPCSGE-GVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP  266 (479)
T ss_dssp             EEEEEEECCCCCG-GGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred             CCEEEECCCcCCc-ccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence            9999999998873 21    11     122344455667789999999999999999999987664 3445555544443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=96.18  E-value=0.026  Score=49.36  Aligned_cols=105  Identities=18%  Similarity=0.202  Sum_probs=67.4

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ......+||=||=|.=.++..|++.    .++++.  |-.+++.+   .+++++.... ..+.++ ..|+.++.    +.
T Consensus        30 ~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~v--D~s~~~~~---~a~~~~~~~~-~~~~~~-~~d~~~~~----~~   94 (243)
T 3d2l_A           30 QVEPGKRIADIGCGTGTATLLLADH----YEVTGV--DLSEEMLE---IAQEKAMETN-RHVDFW-VQDMRELE----LP   94 (243)
T ss_dssp             HSCTTCEEEEESCTTCHHHHHHTTT----SEEEEE--ESCHHHHH---HHHHHHHHTT-CCCEEE-ECCGGGCC----CS
T ss_pred             HcCCCCeEEEecCCCCHHHHHHhhC----CeEEEE--ECCHHHHH---HHHHhhhhcC-CceEEE-EcChhhcC----CC
Confidence            3445689999999999999888865    355554  43333332   2444443322 235544 44777653    22


Q ss_pred             CCCcceEEEcC---CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          100 TRKFDRIIFNF---PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       100 ~~~FDrIIFNF---PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                       ..||.|+.++   .|..             +..-+..+++.+..+|+++|.+.++.
T Consensus        95 -~~fD~v~~~~~~~~~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A           95 -EPVDAITILCDSLNYLQ-------------TEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             -SCEEEEEECTTGGGGCC-------------SHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CCcCEEEEeCCchhhcC-------------CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence             6799999865   3432             12235678899999999999998854

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=96.18  E-value=0.045  Score=47.34  Aligned_cols=128  Identities=16%  Similarity=0.145  Sum_probs=81.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=||=|.=.++..|++.   +.++++.-.+  +++.+.   ++.++.    .++.++ ..|+.++..    . ..
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s--~~~~~~---a~~~~~----~~~~~~-~~d~~~~~~----~-~~  106 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPS--REMRMI---AKEKLP----KEFSIT-EGDFLSFEV----P-TS  106 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT---TCEEEEECSC--HHHHHH---HHHHSC----TTCCEE-SCCSSSCCC----C-SC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCC--HHHHHH---HHHhCC----CceEEE-eCChhhcCC----C-CC
Confidence            5779999999999999999986   3456655443  333221   333322    344443 457777532    2 78


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC------------------------
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP------------------------  158 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P------------------------  158 (389)
                      ||.|+.+..---.   .+         .-...+++.+..+|+++|.+.|+...-.+                        
T Consensus       107 fD~v~~~~~l~~~---~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (220)
T 3hnr_A          107 IDTIVSTYAFHHL---TD---------DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQ  174 (220)
T ss_dssp             CSEEEEESCGGGS---CH---------HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             eEEEEECcchhcC---Ch---------HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcc
Confidence            9999998643221   11         11246788899999999999998522110                        


Q ss_pred             ----CCcccHHHHHhhCCcEEEEEee
Q 016441          159 ----FSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       159 ----Y~sWnIe~LAa~aGL~L~~~~~  180 (389)
                          ++.=.+.++.+++||.++....
T Consensus       175 ~~~~~~~~~~~~~l~~aGf~v~~~~~  200 (220)
T 3hnr_A          175 TEYYTRIPVMQTIFENNGFHVTFTRL  200 (220)
T ss_dssp             HSCCCBHHHHHHHHHHTTEEEEEEEC
T ss_pred             hhhcCCHHHHHHHHHHCCCEEEEeec
Confidence                1223567788999998776543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.18  E-value=0.053  Score=47.37  Aligned_cols=133  Identities=21%  Similarity=0.219  Sum_probs=85.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++. + ...+++.-.+  +++.+.   ++.++   ...++.+ ...|+..+.    +...
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s--~~~~~~---a~~~~---~~~~~~~-~~~d~~~~~----~~~~  106 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLS--EKMLAR---ARAAG---PDTGITY-ERADLDKLH----LPQD  106 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESC--HHHHHH---HHHTS---CSSSEEE-EECCGGGCC----CCTT
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCC--HHHHHH---HHHhc---ccCCceE-EEcChhhcc----CCCC
Confidence            46779999999999999999876 3 2367666544  222221   22222   1123443 345777654    3457


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC------C-------------C----
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT------V-------------P----  158 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g------~-------------P----  158 (389)
                      .||.|+.++.---.   ++           ...+++.+..+|+++|.+.++..+.      .             |    
T Consensus       107 ~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (243)
T 3bkw_A          107 SFDLAYSSLALHYV---ED-----------VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRY  172 (243)
T ss_dssp             CEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCT
T ss_pred             CceEEEEecccccc---ch-----------HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeeccc
Confidence            89999998753221   11           3478899999999999999876320      0             0    


Q ss_pred             -------------------CCcccHHHHHhhCCcEEEEEeeCCC
Q 016441          159 -------------------FSNWNIKELAIGSSLSLIWCSEFKI  183 (389)
Q Consensus       159 -------------------Y~sWnIe~LAa~aGL~L~~~~~F~~  183 (389)
                                         ++.-.+.++.+++||..++...+.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~~~  216 (243)
T 3bkw_A          173 LVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEFCP  216 (243)
T ss_dssp             TCCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEECCC
T ss_pred             ccccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeeccCCC
Confidence                               1223456788999999998877654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.16  E-value=0.07  Score=50.90  Aligned_cols=140  Identities=21%  Similarity=0.181  Sum_probs=90.5

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ....+.+||=+|=|.=.++..+|...+....|++.-.|  ..+.+   .|+.|++...-..+. +..-|++++...    
T Consensus       200 ~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~--~~~i~---~a~~n~~~~g~~~i~-~~~~D~~~~~~~----  269 (354)
T 3tma_A          200 DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLD--EKRLG---LAREAALASGLSWIR-FLRADARHLPRF----  269 (354)
T ss_dssp             TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESC--HHHHH---HHHHHHHHTTCTTCE-EEECCGGGGGGT----
T ss_pred             CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECC--HHHHH---HHHHHHHHcCCCceE-EEeCChhhCccc----
Confidence            34567789888888888888888766445677766555  33332   366676543211233 445688876432    


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      ...||.||.|-|.--..+.      ......|...+++.+.++|+++|.+.+...+.     ..++++.+ .|+...++.
T Consensus       270 ~~~~D~Ii~npPyg~r~~~------~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~-----~~~~~~~~-~g~~~~~~~  337 (354)
T 3tma_A          270 FPEVDRILANPPHGLRLGR------KEGLFHLYWDFLRGALALLPPGGRVALLTLRP-----ALLKRALP-PGFALRHAR  337 (354)
T ss_dssp             CCCCSEEEECCCSCC----------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH-----HHHHHHCC-TTEEEEEEE
T ss_pred             cCCCCEEEECCCCcCccCC------cccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH-----HHHHHHhh-cCcEEEEEE
Confidence            2458999999996432111      12345677899999999999999999876532     23455555 898888776


Q ss_pred             eC
Q 016441          180 EF  181 (389)
Q Consensus       180 ~F  181 (389)
                      +.
T Consensus       338 ~l  339 (354)
T 3tma_A          338 VV  339 (354)
T ss_dssp             EC
T ss_pred             EE
Confidence            54

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=96.15  E-value=0.047  Score=45.43  Aligned_cols=129  Identities=12%  Similarity=0.104  Sum_probs=83.9

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+..+||=||=|.=.++..|++..  . ++++.-.+  .+..+.   ++.+     ..++.+..+ |       ..+..
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~--~-~v~~vD~s--~~~~~~---a~~~-----~~~v~~~~~-d-------~~~~~   73 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFA--T-KLYCIDIN--VIALKE---VKEK-----FDSVITLSD-P-------KEIPD   73 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTE--E-EEEEECSC--HHHHHH---HHHH-----CTTSEEESS-G-------GGSCT
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhc--C-eEEEEeCC--HHHHHH---HHHh-----CCCcEEEeC-C-------CCCCC
Confidence            3567799999999999999999875  2 56665444  222221   2223     224554433 3       22445


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC------C----CCcccHHHHHhh
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV------P----FSNWNIKELAIG  170 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------P----Y~sWnIe~LAa~  170 (389)
                      ..||.|+.+..---.   ++           ...+++.+..+|+++|.+.++-....      |    ++...+.++.+ 
T Consensus        74 ~~~D~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  138 (170)
T 3i9f_A           74 NSVDFILFANSFHDM---DD-----------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-  138 (170)
T ss_dssp             TCEEEEEEESCSTTC---SC-----------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-
T ss_pred             CceEEEEEccchhcc---cC-----------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-
Confidence            789999998754432   12           24788889999999999999865332      1    23335556655 


Q ss_pred             CCcEEEEEeeCCCCCC
Q 016441          171 SSLSLIWCSEFKIEDY  186 (389)
Q Consensus       171 aGL~L~~~~~F~~~~Y  186 (389)
                       ||.+++...+.+..|
T Consensus       139 -Gf~~~~~~~~~~~~~  153 (170)
T 3i9f_A          139 -NFVVEKRFNPTPYHF  153 (170)
T ss_dssp             -TEEEEEEECSSTTEE
T ss_pred             -CcEEEEccCCCCceE
Confidence             999999888775544

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=96.12  E-value=0.011  Score=54.35  Aligned_cols=148  Identities=15%  Similarity=0.172  Sum_probs=84.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC----CEEEeccccCCCCCC--
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG----TCILHGVDATTMELH--   95 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G----v~VlfgVDATkL~~~--   95 (389)
                      .+..+||=+|=|.=.+++.|++... ...|+|.-.+  +++.+   -|+.|++.+...|    +.| +..|+.++...  
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~--~~~~~---~a~~n~~~~~~~~l~~~v~~-~~~D~~~~~~~~~  107 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERS--QEMAE---FARRSLELPDNAAFSARIEV-LEADVTLRAKARV  107 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESS--HHHHH---HHHHHTTSGGGTTTGGGEEE-EECCTTCCHHHHH
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECC--HHHHH---HHHHHHHhhhhCCCcceEEE-EeCCHHHHhhhhh
Confidence            4567899999999999999998763 3456665554  33332   3666765532233    344 45587765210  


Q ss_pred             -CCcCCCCcceEEEcCCCCCCCCCc--cchHHHHHh--HHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhh
Q 016441           96 -PDLRTRKFDRIIFNFPHAGFYGKE--DNHLLIEMH--RSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIG  170 (389)
Q Consensus        96 -~~Lk~~~FDrIIFNFPH~G~~gkE--D~~r~Ir~n--r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~  170 (389)
                       ..+....||.|+.|-|-....+..  +..+.+..|  ...+..|++.|..+|+++|.+.+.+...   ..-.+.+++++
T Consensus       108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~l~~  184 (260)
T 2ozv_A          108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ---SVAEIIAACGS  184 (260)
T ss_dssp             HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG---GHHHHHHHHTT
T ss_pred             hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH---HHHHHHHHHHh
Confidence             013457899999998876531111  111111111  1126789999999999999999876432   22234555554


Q ss_pred             CCcEEEEEee
Q 016441          171 SSLSLIWCSE  180 (389)
Q Consensus       171 aGL~L~~~~~  180 (389)
                      . +...+..+
T Consensus       185 ~-~~~~~i~~  193 (260)
T 2ozv_A          185 R-FGGLEITL  193 (260)
T ss_dssp             T-EEEEEEEE
T ss_pred             c-CCceEEEE
Confidence            3 65555443

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=96.12  E-value=0.013  Score=51.71  Aligned_cols=134  Identities=14%  Similarity=0.103  Sum_probs=84.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++..  ...+++.-.+  ..+.+   .++.++...  ..+.+ ...|+.++.    +...
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s--~~~~~---~a~~~~~~~--~~~~~-~~~d~~~~~----~~~~  157 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPV--KHMLE---EAKRELAGM--PVGKF-ILASMETAT----LPPN  157 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESC--HHHHH---HHHHHTTTS--SEEEE-EESCGGGCC----CCSS
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCC--HHHHH---HHHHHhccC--CceEE-EEccHHHCC----CCCC
Confidence            356799999999999999998875  3356655333  22222   133333221  22333 344777653    3456


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC--CC-----------CCcccHHHHH
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT--VP-----------FSNWNIKELA  168 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g--~P-----------Y~sWnIe~LA  168 (389)
                      .||.|+.++.---.            ...-+..+++.+..+|+++|.+.|+-...  .+           ++.-.+.++.
T Consensus       158 ~fD~v~~~~~l~~~------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  225 (254)
T 1xtp_A          158 TYDLIVIQWTAIYL------------TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLF  225 (254)
T ss_dssp             CEEEEEEESCGGGS------------CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHH
T ss_pred             CeEEEEEcchhhhC------------CHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHH
Confidence            89999998742111            01125678899999999999999876311  11           1224577788


Q ss_pred             hhCCcEEEEEeeC
Q 016441          169 IGSSLSLIWCSEF  181 (389)
Q Consensus       169 a~aGL~L~~~~~F  181 (389)
                      +++||.+++....
T Consensus       226 ~~aGf~~~~~~~~  238 (254)
T 1xtp_A          226 NESGVRVVKEAFQ  238 (254)
T ss_dssp             HHHTCCEEEEEEC
T ss_pred             HHCCCEEEEeeec
Confidence            9999999887554

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.11  E-value=0.0059  Score=57.71  Aligned_cols=112  Identities=16%  Similarity=0.236  Sum_probs=71.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH----hCCCEEEeccccCCC-CCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK----KLGTCILHGVDATTM-ELHPD   97 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr----~~Gv~VlfgVDATkL-~~~~~   97 (389)
                      ...+||.||=|+=.++..|++..+ ...|++.-.|.  ++.+   -+++|+..+.    ...++++.+ |+.+. ..   
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~--~~~~---~a~~~~~~~~~~~~~~~v~~~~~-D~~~~l~~---  159 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDG--LVIE---AARKYLKQTSCGFDDPRAEIVIA-NGAEYVRK---  159 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCH--HHHH---HHHHHCHHHHGGGGCTTEEEEES-CHHHHGGG---
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCH--HHHH---HHHHHhHhhccccCCCceEEEEC-cHHHHHhh---
Confidence            457999999999999999998653 45777776663  2222   2455655442    334666655 66542 21   


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                       ...+||.||.|.|+.+. +..        .......||+.+..+|+++|.+.+...
T Consensus       160 -~~~~fD~Ii~d~~~~~~-~~~--------~~l~~~~~l~~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          160 -FKNEFDVIIIDSTDPTA-GQG--------GHLFTEEFYQACYDALKEDGVFSAETE  206 (296)
T ss_dssp             -CSSCEEEEEEEC-------------------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             -CCCCceEEEEcCCCccc-Cch--------hhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence             13679999999875421 110        011136899999999999999988753

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.11  E-value=0.028  Score=53.07  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=71.7

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-----------hCCCEEEecccc
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-----------KLGTCILHGVDA   89 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-----------~~Gv~VlfgVDA   89 (389)
                      ..+..+||=||=|.=.++.+|++..+....++|.-.+  ++..+   .|++|++.+.           ...+.++ ..|+
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~ln~~~~~~~~v~~~-~~d~  176 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVR--KDHHD---LAKKNYKHWRDSWKLSHVEEWPDNVDFI-HKDI  176 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESS--HHHHH---HHHHHHHHHHHHHTTTCSSCCCCCEEEE-ESCT
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCC--HHHHH---HHHHHHHHhhcccccccccccCCceEEE-ECCh
Confidence            3567899999999999999999987654567765443  33333   3677777653           1234444 4477


Q ss_pred             CCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441           90 TTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus        90 TkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      .++..  .+....||.|+.|.|+.-                   .++..+..+|+++|.+.+...+
T Consensus       177 ~~~~~--~~~~~~fD~V~~~~~~~~-------------------~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          177 SGATE--DIKSLTFDAVALDMLNPH-------------------VTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             TCCC---------EEEEEECSSSTT-------------------TTHHHHGGGEEEEEEEEEEESS
T ss_pred             HHccc--ccCCCCeeEEEECCCCHH-------------------HHHHHHHHhcCCCcEEEEEeCC
Confidence            76532  234457999999877432                   1678899999999999877643

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=96.07  E-value=0.021  Score=49.12  Aligned_cols=125  Identities=10%  Similarity=0.036  Sum_probs=80.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ++.+||=||=|.=.++..|++.++ ...+++.-.+  +++.+   .++.|++.+.-.++. +...|+.++.     ....
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~v~-~~~~d~~~~~-----~~~~  132 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSL--GKRVR---FLRQVQHELKLENIE-PVQSRVEEFP-----SEPP  132 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESC--HHHHH---HHHHHHHHTTCSSEE-EEECCTTTSC-----CCSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCC--HHHHH---HHHHHHHHcCCCCeE-EEecchhhCC-----ccCC
Confidence            467999999999999999998763 4466655443  33332   255566544322333 4556777654     2357


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeCC
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                      ||.|+.|.-       ++           +..++..+..+|+++|.+.+..-.   +..-.+.++.+  |+.+++..+|.
T Consensus       133 ~D~i~~~~~-------~~-----------~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~~--g~~~~~~~~~~  189 (207)
T 1jsx_A          133 FDGVISRAF-------AS-----------LNDMVSWCHHLPGEQGRFYALKGQ---MPEDEIALLPE--EYQVESVVKLQ  189 (207)
T ss_dssp             EEEEECSCS-------SS-----------HHHHHHHHTTSEEEEEEEEEEESS---CCHHHHHTSCT--TEEEEEEEEEE
T ss_pred             cCEEEEecc-------CC-----------HHHHHHHHHHhcCCCcEEEEEeCC---CchHHHHHHhc--CCceeeeeeec
Confidence            999998631       11           348899999999999999987432   22233444433  88888876664

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=96.05  E-value=0.014  Score=51.77  Aligned_cols=133  Identities=17%  Similarity=0.180  Sum_probs=85.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=||=|.=.++..|++..  ...+++.-.+  +++.+   .++.++.......+. +...|+..+.    +....
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~-~~~~d~~~~~----~~~~~  146 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDIT--EDFLV---QAKTYLGEEGKRVRN-YFCCGLQDFT----PEPDS  146 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESC--HHHHH---HHHHHTGGGGGGEEE-EEECCGGGCC----CCSSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCC--HHHHH---HHHHHhhhcCCceEE-EEEcChhhcC----CCCCC
Confidence            47799999999999999998764  3466665443  22222   133333322111122 4456777654    23468


Q ss_pred             cceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC-------C-----CCcccHHHHH
Q 016441          103 FDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV-------P-----FSNWNIKELA  168 (389)
Q Consensus       103 FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-------P-----Y~sWnIe~LA  168 (389)
                      ||.|+.++.  |+.              ..-+..+++.+..+|+++|.+.|+-....       .     ++.-.+.++.
T Consensus       147 fD~v~~~~~l~~~~--------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  212 (241)
T 2ex4_A          147 YDVIWIQWVIGHLT--------------DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRII  212 (241)
T ss_dssp             EEEEEEESCGGGSC--------------HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHH
T ss_pred             EEEEEEcchhhhCC--------------HHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHH
Confidence            999999843  332              12246889999999999999998643211       0     1233567788


Q ss_pred             hhCCcEEEEEeeC
Q 016441          169 IGSSLSLIWCSEF  181 (389)
Q Consensus       169 a~aGL~L~~~~~F  181 (389)
                      +++||.+++....
T Consensus       213 ~~aGf~~~~~~~~  225 (241)
T 2ex4_A          213 CSAGLSLLAEERQ  225 (241)
T ss_dssp             HHTTCCEEEEEEC
T ss_pred             HHcCCeEEEeeec
Confidence            9999999987665

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.05  E-value=0.013  Score=48.86  Aligned_cols=123  Identities=16%  Similarity=0.141  Sum_probs=81.3

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCC-CCCCCCc
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATT-MELHPDL   98 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATk-L~~~~~L   98 (389)
                      ..+..+||-+|=|.=.++..|++..   ..+++.-.+  ++..+   .++.|++...- ..+.+ ...|+.+ +..    
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~--~~~~~---~a~~~~~~~~~~~~~~~-~~~d~~~~~~~----   97 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRN--PEAIS---TTEMNLQRHGLGDNVTL-MEGDAPEALCK----   97 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESC--HHHHH---HHHHHHHHTTCCTTEEE-EESCHHHHHTT----
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECC--HHHHH---HHHHHHHHcCCCcceEE-EecCHHHhccc----
Confidence            4567899999999999999998764   467666554  22222   24555544322 12333 3346554 221    


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEE
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLI  176 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~  176 (389)
                       ...||.|+.+.|--      +           +..+++.+..+|+++|.+.++....  .+.+.+.++.++.|+.+.
T Consensus        98 -~~~~D~v~~~~~~~------~-----------~~~~l~~~~~~l~~gG~l~~~~~~~--~~~~~~~~~l~~~g~~~~  155 (192)
T 1l3i_A           98 -IPDIDIAVVGGSGG------E-----------LQEILRIIKDKLKPGGRIIVTAILL--ETKFEAMECLRDLGFDVN  155 (192)
T ss_dssp             -SCCEEEEEESCCTT------C-----------HHHHHHHHHHTEEEEEEEEEEECBH--HHHHHHHHHHHHTTCCCE
T ss_pred             -CCCCCEEEECCchH------H-----------HHHHHHHHHHhcCCCcEEEEEecCc--chHHHHHHHHHHCCCceE
Confidence             14799999986521      1           3578999999999999999876543  355777888888888443

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=96.04  E-value=0.053  Score=47.77  Aligned_cols=136  Identities=15%  Similarity=0.114  Sum_probs=84.8

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF  103 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F  103 (389)
                      ..+||=||=|.=.++..|++.   +..++++  |-.+++.+.   ++.++.......-.-+...|++++..     ...|
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gv--D~s~~~~~~---a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~f  133 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASP---ERFVVGL--DISESALAK---ANETYGSSPKAEYFSFVKEDVFTWRP-----TELF  133 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBT---TEEEEEE--CSCHHHHHH---HHHHHTTSGGGGGEEEECCCTTTCCC-----SSCE
T ss_pred             CCCEEEeCCCCCHHHHHHHhC---CCeEEEE--ECCHHHHHH---HHHHhhccCCCcceEEEECchhcCCC-----CCCe
Confidence            348999999999999998763   3455554  533333321   44443321111113344567777542     3489


Q ss_pred             ceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC------CCCC--CcccHHHHHhhCCcEE
Q 016441          104 DRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT------TVPF--SNWNIKELAIGSSLSL  175 (389)
Q Consensus       104 DrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~------g~PY--~sWnIe~LAa~aGL~L  175 (389)
                      |.|+.+....-. ..+           -...+++.+..+|+++|.+.+....      +.|+  +.=.+.++.+++||..
T Consensus       134 D~v~~~~~l~~~-~~~-----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  201 (235)
T 3lcc_A          134 DLIFDYVFFCAI-EPE-----------MRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKA  201 (235)
T ss_dssp             EEEEEESSTTTS-CGG-----------GHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEE
T ss_pred             eEEEEChhhhcC-CHH-----------HHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeE
Confidence            999987654432 111           1457889999999999999886543      2232  2235667888999999


Q ss_pred             EEEeeCCCC
Q 016441          176 IWCSEFKIE  184 (389)
Q Consensus       176 ~~~~~F~~~  184 (389)
                      ++.......
T Consensus       202 ~~~~~~~~~  210 (235)
T 3lcc_A          202 VSVEENPHA  210 (235)
T ss_dssp             EEEEECTTC
T ss_pred             EEEEecCCc
Confidence            988776544

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.00  E-value=0.22  Score=42.86  Aligned_cols=123  Identities=12%  Similarity=0.088  Sum_probs=81.1

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+..+||=||=|.=.++..|++.. ....++|.-.+  ++..+   .+++|++...-..+.++ .-|+.+.-.    ..
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~v~~~-~~d~~~~~~----~~  106 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERN--PQYLG---FIRDNLKKFVARNVTLV-EAFAPEGLD----DL  106 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECC--HHHHH---HHHHHHHHHTCTTEEEE-ECCTTTTCT----TS
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCC--HHHHH---HHHHHHHHhCCCcEEEE-eCChhhhhh----cC
Confidence            4567899999999999999999874 34567666554  33332   35667665543234433 345543221    12


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCc
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSL  173 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL  173 (389)
                      ..||.|+.+.+.-                 -+..+++.+..+|+++|.+.+......  +.-.+.++.+++|+
T Consensus       107 ~~~D~i~~~~~~~-----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~l~~~g~  160 (204)
T 3e05_A          107 PDPDRVFIGGSGG-----------------MLEEIIDAVDRRLKSEGVIVLNAVTLD--TLTKAVEFLEDHGY  160 (204)
T ss_dssp             CCCSEEEESCCTT-----------------CHHHHHHHHHHHCCTTCEEEEEECBHH--HHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCCCc-----------------CHHHHHHHHHHhcCCCeEEEEEecccc--cHHHHHHHHHHCCC
Confidence            5699999987542                 134789999999999999998754321  23356667778887

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=95.99  E-value=0.11  Score=48.61  Aligned_cols=135  Identities=15%  Similarity=0.073  Sum_probs=84.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ++..+||=||=|.=.++..|++.+. .  +..|.+|- ..+.+.   +.+++....- ..+++ ..-|+..  ..+    
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p-~--~~~~~~D~-~~~~~~---a~~~~~~~~~~~~v~~-~~~d~~~--~~p----  233 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHE-D--LSGTVLDL-QGPASA---AHRRFLDTGLSGRAQV-VVGSFFD--PLP----  233 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCT-T--CEEEEEEC-HHHHHH---HHHHHHHTTCTTTEEE-EECCTTS--CCC----
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCC-C--CeEEEecC-HHHHHH---HHHhhhhcCcCcCeEE-ecCCCCC--CCC----
Confidence            4567999999999999999999873 2  34455677 555442   5555443211 11222 2345531  111    


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC-------------------CCCCCc
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT-------------------TVPFSN  161 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~-------------------g~PY~s  161 (389)
                      ..||.|+...----+   .|         +-...+++.+..+|+|||.+.|.-..                   +..++.
T Consensus       234 ~~~D~v~~~~vlh~~---~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~  301 (332)
T 3i53_A          234 AGAGGYVLSAVLHDW---DD---------LSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSL  301 (332)
T ss_dssp             CSCSEEEEESCGGGS---CH---------HHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCH
T ss_pred             CCCcEEEEehhhccC---CH---------HHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCH
Confidence            179999987543222   11         12446788889999999999886432                   112333


Q ss_pred             ccHHHHHhhCCcEEEEEeeCC
Q 016441          162 WNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       162 WnIe~LAa~aGL~L~~~~~F~  182 (389)
                      =++.++.+++||..++..+..
T Consensus       302 ~e~~~ll~~aGf~~~~~~~~~  322 (332)
T 3i53_A          302 AELGELAAQAGLAVRAAHPIS  322 (332)
T ss_dssp             HHHHHHHHHTTEEEEEEEECS
T ss_pred             HHHHHHHHHCCCEEEEEEECC
Confidence            346678899999999887654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=95.98  E-value=0.038  Score=49.55  Aligned_cols=102  Identities=18%  Similarity=0.191  Sum_probs=66.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++..   .++++.-++  .++.+.   +++++.     ++.++ ..|+.++..     ..
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s--~~~~~~---a~~~~~-----~~~~~-~~d~~~~~~-----~~  109 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSF---GTVEGLELS--ADMLAI---ARRRNP-----DAVLH-HGDMRDFSL-----GR  109 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESC--HHHHHH---HHHHCT-----TSEEE-ECCTTTCCC-----SC
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECC--HHHHHH---HHhhCC-----CCEEE-ECChHHCCc-----cC
Confidence            456899999999999999998762   356655433  333321   333321     45554 447777543     47


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      .||.|+.++.-+...          .+.+-+..+++.+..+|+|+|.+.|+
T Consensus       110 ~fD~v~~~~~~l~~~----------~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          110 RFSAVTCMFSSIGHL----------AGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             CEEEEEECTTGGGGS----------CHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CcCEEEEcCchhhhc----------CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            899999876311110          12234668899999999999999986

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=95.97  E-value=0.031  Score=47.86  Aligned_cols=114  Identities=13%  Similarity=0.091  Sum_probs=70.9

Q ss_pred             ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC
Q 016441           18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD   97 (389)
Q Consensus        18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~   97 (389)
                      +.+..+..+||=||=|.-.++..++...  +.++++.  |-.+++.+.   ++.+++... ..+.+. ..|++++.    
T Consensus        18 ~~~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~v--D~s~~~~~~---a~~~~~~~~-~~~~~~-~~d~~~~~----   84 (209)
T 2p8j_A           18 CNESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGI--EISDLQLKK---AENFSRENN-FKLNIS-KGDIRKLP----   84 (209)
T ss_dssp             HHHSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEE--ECCHHHHHH---HHHHHHHHT-CCCCEE-ECCTTSCC----
T ss_pred             HhccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEE--ECCHHHHHH---HHHHHHhcC-CceEEE-ECchhhCC----
Confidence            4455677899999999887765555443  3455554  533333332   444544332 345443 44777653    


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      +....||.|+.+..-... .           ..-...+++.+..+|+|+|.+.++..+.
T Consensus        85 ~~~~~fD~v~~~~~l~~~-~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           85 FKDESMSFVYSYGTIFHM-R-----------KNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             SCTTCEEEEEECSCGGGS-C-----------HHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             CCCCceeEEEEcChHHhC-C-----------HHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            345789999987432111 0           1125578889999999999999987653

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=95.94  E-value=0.13  Score=48.69  Aligned_cols=136  Identities=17%  Similarity=0.152  Sum_probs=84.8

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ..+..+||=||=|.=.++..|++.+. ...+  |..|- ..+.+   .+++++....-. ++++ ...|+.+  .   +.
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~--~~~D~-~~~~~---~a~~~~~~~~~~~~v~~-~~~d~~~--~---~~  246 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAP-HLRG--TLVEL-AGPAE---RARRRFADAGLADRVTV-AEGDFFK--P---LP  246 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCT-TCEE--EEEEC-HHHHH---HHHHHHHHTTCTTTEEE-EECCTTS--C---CS
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCC-CCEE--EEEeC-HHHHH---HHHHHHHhcCCCCceEE-EeCCCCC--c---CC
Confidence            45678999999999999999999863 3344  55565 44444   255555432211 2333 3346543  1   11


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec-----CC------------------
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK-----TT------------------  156 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk-----~g------------------  156 (389)
                       ..||.|+.+..---.   .+         .-...+++.+..+|+|+|.+.|.-.     +.                  
T Consensus       247 -~~~D~v~~~~vl~~~---~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (374)
T 1qzz_A          247 -VTADVVLLSFVLLNW---SD---------EDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMG  313 (374)
T ss_dssp             -CCEEEEEEESCGGGS---CH---------HHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHS
T ss_pred             -CCCCEEEEeccccCC---CH---------HHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCC
Confidence             239999998653222   11         1134788889999999998887543     11                  


Q ss_pred             -CCCCcccHHHHHhhCCcEEEEEeeCC
Q 016441          157 -VPFSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       157 -~PY~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                       ..++.=++.++.+++||..++..+..
T Consensus       314 ~~~~~~~~~~~ll~~aGf~~~~~~~~~  340 (374)
T 1qzz_A          314 GRVRTRDEVVDLAGSAGLALASERTSG  340 (374)
T ss_dssp             CCCCCHHHHHHHHHTTTEEEEEEEEEC
T ss_pred             CcCCCHHHHHHHHHHCCCceEEEEECC
Confidence             11233345668889999999887664

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=95.91  E-value=0.032  Score=46.36  Aligned_cols=127  Identities=17%  Similarity=0.061  Sum_probs=78.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EEEeccccCCCCCCCCcC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT--CILHGVDATTMELHPDLR   99 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv--~VlfgVDATkL~~~~~Lk   99 (389)
                      .+..+||=||=|.=.++..|++.++ +..+++.-.+  ++..+   .++.|++.   .|.  .|...-|+..   .....
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~--~~~~~---~a~~~~~~---~~~~~~~~~~~d~~~---~~~~~   91 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEIS--EERRE---RILSNAIN---LGVSDRIAVQQGAPR---AFDDV   91 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSC--HHHHH---HHHHHHHT---TTCTTSEEEECCTTG---GGGGC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCC--HHHHH---HHHHHHHH---hCCCCCEEEecchHh---hhhcc
Confidence            4567999999999999999998763 3456655443  33332   25555543   343  2344455533   11111


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      ...||.|+.+++.--                  ..+++.+..+|+++|.+.++.....  +...+.++-++.|+.+.+..
T Consensus        92 ~~~~D~i~~~~~~~~------------------~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  151 (178)
T 3hm2_A           92 PDNPDVIFIGGGLTA------------------PGVFAAAWKRLPVGGRLVANAVTVE--SEQMLWALRKQFGGTISSFA  151 (178)
T ss_dssp             CSCCSEEEECC-TTC------------------TTHHHHHHHTCCTTCEEEEEECSHH--HHHHHHHHHHHHCCEEEEEE
T ss_pred             CCCCCEEEECCcccH------------------HHHHHHHHHhcCCCCEEEEEeeccc--cHHHHHHHHHHcCCeeEEEE
Confidence            267999998875421                  3688889999999999998775432  22344455556666666543


Q ss_pred             e
Q 016441          180 E  180 (389)
Q Consensus       180 ~  180 (389)
                      .
T Consensus       152 ~  152 (178)
T 3hm2_A          152 I  152 (178)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=95.88  E-value=0.0056  Score=58.81  Aligned_cols=110  Identities=23%  Similarity=0.308  Sum_probs=72.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH----HhCCCEEEeccccCCC-CCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL----KKLGTCILHGVDATTM-ELHPD   97 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L----r~~Gv~VlfgVDATkL-~~~~~   97 (389)
                      ...+||-||=|+=.++..|++..+ ...+++.-.|.  ++.+   -|++|+..+    ....++++.+ |+.+. ..   
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~--~~l~---~ar~~~~~~~~~~~~~~v~~~~~-D~~~~l~~---  185 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDE--TVIE---VSKIYFKNISCGYEDKRVNVFIE-DASKFLEN---  185 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCH--HHHH---HHHHHCTTTSGGGGSTTEEEEES-CHHHHHHH---
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCH--HHHH---HHHHHHHhhccccCCCcEEEEEc-cHHHHHhh---
Confidence            457999999999999999997643 45777776663  2222   245555442    2234555544 65542 11   


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHH-HHHHHhhHhcccCCCeEEEEec
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLV-RDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL-~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                       ...+||.||.|.|+.-  +.         ...|. ..||+.+..+|+++|.+.+...
T Consensus       186 -~~~~fDvIi~d~~~p~--~~---------~~~l~~~~~l~~~~~~LkpgG~lv~~~~  231 (321)
T 2pt6_A          186 -VTNTYDVIIVDSSDPI--GP---------AETLFNQNFYEKIYNALKPNGYCVAQCE  231 (321)
T ss_dssp             -CCSCEEEEEEECCCSS--SG---------GGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -cCCCceEEEECCcCCC--Cc---------chhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence             1367999999986432  11         11233 6899999999999999988753

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=95.86  E-value=0.082  Score=47.13  Aligned_cols=135  Identities=17%  Similarity=0.132  Sum_probs=82.1

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..++.+||=||=|.=.++..|++..+ ...|+|.-.+ .+ +.+.   ..+..+.  ..++..+. -|++.+.....+. 
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s-~~-~l~~---~~~~a~~--~~~v~~~~-~d~~~~~~~~~~~-  124 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYS-AK-PFEK---LLELVRE--RNNIIPLL-FDASKPWKYSGIV-  124 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCC-HH-HHHH---HHHHHHH--CSSEEEEC-SCTTCGGGTTTTC-
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECC-HH-HHHH---HHHHHhc--CCCeEEEE-cCCCCchhhcccc-
Confidence            35678999999999999999998875 4466665444 22 2111   1111111  13454444 3777653222233 


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcc---c-----HHHHHhhCC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW---N-----IKELAIGSS  172 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW---n-----Ie~LAa~aG  172 (389)
                      ..||.|+.|.++.      +          -...+++.+..+|+|||.+.++++.+..-..+   .     +++ .+++ 
T Consensus       125 ~~fD~V~~~~~~~------~----------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-l~~~-  186 (210)
T 1nt2_A          125 EKVDLIYQDIAQK------N----------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKE-MEGD-  186 (210)
T ss_dssp             CCEEEEEECCCST------T----------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHH-HHTT-
T ss_pred             cceeEEEEeccCh------h----------HHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHH-HHhh-
Confidence            6899999996432      1          12356888999999999999997543211122   2     222 3445 


Q ss_pred             cEEEEEeeCCC
Q 016441          173 LSLIWCSEFKI  183 (389)
Q Consensus       173 L~L~~~~~F~~  183 (389)
                      |.+.+.....+
T Consensus       187 f~~~~~~~~~p  197 (210)
T 1nt2_A          187 FKIVKHGSLMP  197 (210)
T ss_dssp             SEEEEEEECTT
T ss_pred             cEEeeeecCCC
Confidence            99998877643

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=95.85  E-value=0.024  Score=47.68  Aligned_cols=118  Identities=17%  Similarity=0.107  Sum_probs=71.4

Q ss_pred             cccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCC
Q 016441           17 WIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELH   95 (389)
Q Consensus        17 ~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~   95 (389)
                      ++....+..+||=+|=|.=.++..|++. + ...+++.-.+  +++.+   .++.|++...-. .+. +..-|+.+.-. 
T Consensus        25 ~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~~~-~~~~d~~~~~~-   95 (177)
T 2esr_A           25 MIGPYFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKN--RKAQA---IIQDNIIMTKAENRFT-LLKMEAERAID-   95 (177)
T ss_dssp             HHCSCCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCC--HHHHH---HHHHHHHTTTCGGGEE-EECSCHHHHHH-
T ss_pred             HHHhhcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECC--HHHHH---HHHHHHHHcCCCCceE-EEECcHHHhHH-
Confidence            4444567889999999999999999876 3 3467766554  33332   255555432111 133 33446655211 


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP  158 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  158 (389)
                        .....||.|+.|.|...           ....+++..+..  ..+|+++|.+.++......
T Consensus        96 --~~~~~fD~i~~~~~~~~-----------~~~~~~~~~l~~--~~~L~~gG~l~~~~~~~~~  143 (177)
T 2esr_A           96 --CLTGRFDLVFLDPPYAK-----------ETIVATIEALAA--KNLLSEQVMVVCETDKTVL  143 (177)
T ss_dssp             --HBCSCEEEEEECCSSHH-----------HHHHHHHHHHHH--TTCEEEEEEEEEEEETTCC
T ss_pred             --hhcCCCCEEEECCCCCc-----------chHHHHHHHHHh--CCCcCCCcEEEEEECCccc
Confidence              11245999999988521           012333444333  5899999999998876653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=95.82  E-value=0.0054  Score=58.99  Aligned_cols=109  Identities=18%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH----HhCCCEEEeccccCC-CCCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL----KKLGTCILHGVDATT-MELHPD   97 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L----r~~Gv~VlfgVDATk-L~~~~~   97 (389)
                      ...+||.||=|+=.++..|+++. ....|++.-.|.  ++.+   -|++|+..+    ....++++ .-||.+ |..   
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~--~~i~---~Ar~~~~~~~~~~~~~rv~~~-~~D~~~~l~~---  177 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDE--MVID---VAKKFLPGMSCGFSHPKLDLF-CGDGFEFLKN---  177 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCH--HHHH---HHHHHCTTTSGGGGCTTEEEE-CSCHHHHHHH---
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCH--HHHH---HHHHHHHHhccccCCCCEEEE-EChHHHHHHh---
Confidence            45799999999999999999864 345777776663  2222   244454332    22334544 346654 221   


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHH-HHHHHhhHhcccCCCeEEEEe
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLV-RDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL-~~FF~SA~~lL~~~GeIHVTL  153 (389)
                       ...+||.||.|.|+.-.           ....|. ..||+.+..+|+++|.+.+..
T Consensus       178 -~~~~fD~Ii~d~~~~~~-----------~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          178 -HKNEFDVIITDSSDPVG-----------PAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             -CTTCEEEEEECCC------------------------HHHHHHHHEEEEEEEEEEC
T ss_pred             -cCCCceEEEEcCCCCCC-----------cchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence             24679999999876421           112344 799999999999999998875

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=95.82  E-value=0.042  Score=46.99  Aligned_cols=113  Identities=17%  Similarity=0.103  Sum_probs=74.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=+|=|.=.++..++.. + ...++|.-.+  +++.+   .++.|++...-..+. +..-|+.++...  +...
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~v~-~~~~d~~~~~~~--~~~~  112 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESD--QRSAA---VIARNIEALGLSGAT-LRRGAVAAVVAA--GTTS  112 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECC--HHHHH---HHHHHHHHHTCSCEE-EEESCHHHHHHH--CCSS
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECC--HHHHH---HHHHHHHHcCCCceE-EEEccHHHHHhh--ccCC
Confidence            46789999999988888877764 2 3456665544  33333   366677665432333 345577665321  2247


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHh--cccCCCeEEEEecCCC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSG--MLRDGGEVHVSHKTTV  157 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~--lL~~~GeIHVTLk~g~  157 (389)
                      .||.|+.|.|....             ...+..++..+..  +|+|+|.+.|......
T Consensus       113 ~fD~i~~~~p~~~~-------------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          113 PVDLVLADPPYNVD-------------SADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             CCSEEEECCCTTSC-------------HHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             CccEEEECCCCCcc-------------hhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            89999999995542             1235566677777  9999999999887654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=95.81  E-value=0.0048  Score=57.86  Aligned_cols=110  Identities=22%  Similarity=0.250  Sum_probs=71.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH----HhCCCEEEeccccCCCCCCCCc
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL----KKLGTCILHGVDATTMELHPDL   98 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L----r~~Gv~VlfgVDATkL~~~~~L   98 (389)
                      +..+||.||=|+=+.+..|++.. ...++++.-.|..  +.+   -+++++..+    ....++|+. -|+.+.-..   
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~--~i~---~a~~~~~~~~~~~~~~~v~~~~-~D~~~~l~~---  147 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDET--VIE---VSKIYFKNISCGYEDKRVNVFI-EDASKFLEN---  147 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHH--HHH---HHHHHCTTTSGGGGSTTEEEEE-SCHHHHHHH---
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHH--HHH---HHHHHhHHhccccCCCcEEEEE-CChHHHHHh---
Confidence            45799999999999999998764 3457777776632  222   134444332    233455544 366552110   


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHH-HHHHHhhHhcccCCCeEEEEe
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLV-RDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL-~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      ...+||.||.|.+..-.  .         ...|. ..||+.+..+|+++|.+.+..
T Consensus       148 ~~~~fD~Ii~d~~~~~~--~---------~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          148 VTNTYDVIIVDSSDPIG--P---------AETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             CCSCEEEEEEECCCTTT--G---------GGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCceEEEEcCCCCCC--c---------chhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            14679999998775421  1         11233 689999999999999998764

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=95.77  E-value=0.0091  Score=56.86  Aligned_cols=111  Identities=17%  Similarity=0.261  Sum_probs=73.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-----hCCCEEEeccccCCC-CCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-----KLGTCILHGVDATTM-ELHP   96 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-----~~Gv~VlfgVDATkL-~~~~   96 (389)
                      ...+||.||=|+=.+++.|++..+ ...+++.-.|.  ++.+   -|++++..+.     ...++++. -|+.+. ..  
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~--~~i~---~ar~~~~~~~~~~~~~~~v~~~~-~D~~~~l~~--  147 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDG--ELVE---VAKRHMPEWHQGAFDDPRAVLVI-DDARAYLER--  147 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCH--HHHH---HHHHHCHHHHTTGGGCTTEEEEE-SCHHHHHHH--
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCH--HHHH---HHHHHhHhhccccccCCceEEEE-chHHHHHHh--
Confidence            457999999999999999998643 45677776663  2332   2455665532     33456554 376652 21  


Q ss_pred             CcCCCCcceEEEcCCCCCCC-CCccchHHHHHhHHH-HHHHHHhhHhcccCCCeEEEEe
Q 016441           97 DLRTRKFDRIIFNFPHAGFY-GKEDNHLLIEMHRSL-VRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFPH~G~~-gkED~~r~Ir~nr~L-L~~FF~SA~~lL~~~GeIHVTL  153 (389)
                        ...+||.||.|.|..-.. +.         ...| ...||+.+..+|+++|.+.+..
T Consensus       148 --~~~~fD~Ii~d~~~~~~~~~~---------~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          148 --TEERYDVVIIDLTDPVGEDNP---------ARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             --CCCCEEEEEEECCCCBSTTCG---------GGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --cCCCccEEEECCCCcccccCc---------chhccHHHHHHHHHHhcCCCcEEEEEc
Confidence              236799999998863200 10         1112 4689999999999999998864

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=95.74  E-value=0.01  Score=55.12  Aligned_cols=129  Identities=17%  Similarity=0.128  Sum_probs=83.9

Q ss_pred             ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC
Q 016441           18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD   97 (389)
Q Consensus        18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~   97 (389)
                      +....++.+||=+|=|.=+|++.||+..+ +..++|.-.+  .+..+   .++.|++...-.++. ...-|+.++ ..  
T Consensus       114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s--~~av~---~a~~n~~~n~l~~~~-~~~~d~~~~-~~--  183 (272)
T 3a27_A          114 AFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKN--PTAYH---YLCENIKLNKLNNVI-PILADNRDV-EL--  183 (272)
T ss_dssp             HTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECC--HHHHH---HHHHHHHHTTCSSEE-EEESCGGGC-CC--
T ss_pred             HHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCC--HHHHH---HHHHHHHHcCCCCEE-EEECChHHc-Cc--
Confidence            44467788999999999999999998764 4466665443  33332   366676543322344 566788887 22  


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC--CC-ccc-HHHHHhhCCc
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP--FS-NWN-IKELAIGSSL  173 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P--Y~-sWn-Ie~LAa~aGL  173 (389)
                        ...||.|+.|.|. +                 +..++..+..+|+++|.|+++-.....  .. ... ++.+++..+.
T Consensus       184 --~~~~D~Vi~d~p~-~-----------------~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~  243 (272)
T 3a27_A          184 --KDVADRVIMGYVH-K-----------------THKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGY  243 (272)
T ss_dssp             --TTCEEEEEECCCS-S-----------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTE
T ss_pred             --cCCceEEEECCcc-c-----------------HHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCC
Confidence              4679999999996 2                 124677788899999999988664421  11 122 3445555565


Q ss_pred             EEE
Q 016441          174 SLI  176 (389)
Q Consensus       174 ~L~  176 (389)
                      .+.
T Consensus       244 ~~~  246 (272)
T 3a27_A          244 KLI  246 (272)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            443

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.73  E-value=0.015  Score=49.57  Aligned_cols=121  Identities=17%  Similarity=0.220  Sum_probs=74.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||-||=|.=.++..|++. +. .++++.-.+  +.+.+   .+++++..  ..++.++ ..|+.++.    +...
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~~D~s--~~~~~---~a~~~~~~--~~~i~~~-~~d~~~~~----~~~~  106 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLG-GF-PNVTSVDYS--SVVVA---AMQACYAH--VPQLRWE-TMDVRKLD----FPSA  106 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHT-TC-CCEEEEESC--HHHHH---HHHHHTTT--CTTCEEE-ECCTTSCC----SCSS
T ss_pred             CCCCeEEEECCCCcHHHHHHHHc-CC-CcEEEEeCC--HHHHH---HHHHhccc--CCCcEEE-EcchhcCC----CCCC
Confidence            56789999999998899999876 32 367776554  22222   13334332  1245554 45887763    3457


Q ss_pred             CcceEEEcCCCCCCC-CCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441          102 KFDRIIFNFPHAGFY-GKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~-gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      .||.|+.+.|--... +..+.-..-..+..-+..+++.+..+|+++|.+.+.....
T Consensus       107 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          107 SFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             CEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            899999876531100 0000000001345567889999999999999999876543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=95.72  E-value=0.0099  Score=50.59  Aligned_cols=117  Identities=18%  Similarity=0.152  Sum_probs=75.7

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCC--------CcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSA--------SNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTM   92 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~--------~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL   92 (389)
                      ..+..+||=+|=|.=.++..|++.++..        ..|+|.-.+...                ...++.++-..|++.+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------------~~~~~~~~~~~d~~~~   83 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------------PLEGATFLCPADVTDP   83 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------------CCTTCEEECSCCTTSH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------------cCCCCeEEEeccCCCH
Confidence            4568899999999999999999987632        567777665421                0124554424455543


Q ss_pred             CCC----CCcCCCCcceEEEcC-CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441           93 ELH----PDLRTRKFDRIIFNF-PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus        93 ~~~----~~Lk~~~FDrIIFNF-PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                      ...    ..+....||.|+.|+ ||+-+....|    ......+...+++.+..+|+++|.+.++...+.
T Consensus        84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  149 (196)
T 2nyu_A           84 RTSQRILEVLPGRRADVILSDMAPNATGFRDLD----HDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS  149 (196)
T ss_dssp             HHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHH----HHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred             HHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccC----HHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            210    002345799999998 4543211111    122345667899999999999999999876653

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=95.66  E-value=0.032  Score=48.92  Aligned_cols=118  Identities=17%  Similarity=0.195  Sum_probs=68.9

Q ss_pred             cccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh--CCCEEEeccccCCCCC
Q 016441           17 WIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK--LGTCILHGVDATTMEL   94 (389)
Q Consensus        17 ~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~--~Gv~VlfgVDATkL~~   94 (389)
                      |+....++.+||=+|=|.=.++..++.. + ...|+|.-.+  +++.+   .++.|++...-  ..+.+ ..-|+.++..
T Consensus        47 ~l~~~~~~~~vLDlGcGtG~~~~~~~~~-~-~~~v~gvD~s--~~~l~---~a~~~~~~~~~~~~~v~~-~~~d~~~~~~  118 (201)
T 2ift_A           47 WLMPYIHQSECLDGFAGSGSLGFEALSR-Q-AKKVTFLELD--KTVAN---QLKKNLQTLKCSSEQAEV-INQSSLDFLK  118 (201)
T ss_dssp             HHHHHHTTCEEEETTCTTCHHHHHHHHT-T-CSEEEEECSC--HHHHH---HHHHHHHHTTCCTTTEEE-ECSCHHHHTT
T ss_pred             HHHHhcCCCeEEEcCCccCHHHHHHHHc-c-CCEEEEEECC--HHHHH---HHHHHHHHhCCCccceEE-EECCHHHHHH
Confidence            3333336779999988888888876654 2 2456554443  33433   25666654432  13333 4447665432


Q ss_pred             CCCcCCCC-cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441           95 HPDLRTRK-FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus        95 ~~~Lk~~~-FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                      .  +.... ||.|+.|.|.. .   ++       ...++..+.+  ..+|+++|.+.++.....
T Consensus       119 ~--~~~~~~fD~I~~~~~~~-~---~~-------~~~~l~~~~~--~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          119 Q--PQNQPHFDVVFLDPPFH-F---NL-------AEQAISLLCE--NNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             S--CCSSCCEEEEEECCCSS-S---CH-------HHHHHHHHHH--TTCEEEEEEEEEEEESSS
T ss_pred             h--hccCCCCCEEEECCCCC-C---cc-------HHHHHHHHHh--cCccCCCcEEEEEECCCC
Confidence            1  22467 99999999921 1   11       1222333222  678999999999887654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=95.64  E-value=0.11  Score=45.31  Aligned_cols=100  Identities=19%  Similarity=0.225  Sum_probs=65.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++...   ++++  .|-..++.+.   +++++     .++.+. ..|+.++..     ..
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~--~D~s~~~~~~---a~~~~-----~~~~~~-~~d~~~~~~-----~~   99 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG---DTAG--LELSEDMLTH---ARKRL-----PDATLH-QGDMRDFRL-----GR   99 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS---EEEE--EESCHHHHHH---HHHHC-----TTCEEE-ECCTTTCCC-----SS
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC---cEEE--EeCCHHHHHH---HHHhC-----CCCEEE-ECCHHHccc-----CC
Confidence            5678999999999999999998752   5665  4533333321   33222     235544 457776542     46


Q ss_pred             CcceEEE---cCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          102 KFDRIIF---NFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       102 ~FDrIIF---NFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      .||.|+.   .+.|...             .+-+..+++.+..+|+++|.+.++.
T Consensus       100 ~~D~v~~~~~~~~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          100 KFSAVVSMFSSVGYLKT-------------TEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             CEEEEEECTTGGGGCCS-------------HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCcEEEEcCchHhhcCC-------------HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            7999994   2344421             1235678999999999999998874

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=95.60  E-value=0.15  Score=48.85  Aligned_cols=147  Identities=10%  Similarity=0.023  Sum_probs=93.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ..+++||=+|=|-=..|..||...+....|+|.-.+. +.+    ..+++|++.+.-.++.+ ..-|+.++..... ...
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~-~~l----~~~~~n~~r~g~~~v~~-~~~D~~~~~~~~~-~~~  173 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDA-KRL----ASMATLLARAGVSCCEL-AEEDFLAVSPSDP-RYH  173 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCH-HHH----HHHHHHHHHTTCCSEEE-EECCGGGSCTTCG-GGT
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCH-HHH----HHHHHHHHHcCCCeEEE-EeCChHhcCcccc-ccC
Confidence            4578999998888888888988765445677765542 222    23566765543223444 4558888754211 125


Q ss_pred             CcceEEEcCCCCCCCCCc----cc-------hHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHh
Q 016441          102 KFDRIIFNFPHAGFYGKE----DN-------HLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAI  169 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkE----D~-------~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa  169 (389)
                      .||+|+.|=|..|. |.-    |.       ...+..-..+-...+..|..+|+ +|.+..+-|+-.|- +...|..+.+
T Consensus       174 ~fD~Vl~D~PcSg~-G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~  251 (309)
T 2b9e_A          174 EVHYILLDPSCSGS-GMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQ  251 (309)
T ss_dssp             TEEEEEECCCCCC-------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHT
T ss_pred             CCCEEEEcCCcCCC-CCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHH
Confidence            79999999999884 320    10       01233344556778889999887 89999888887653 5667777554


Q ss_pred             h-CC-cEEEE
Q 016441          170 G-SS-LSLIW  177 (389)
Q Consensus       170 ~-aG-L~L~~  177 (389)
                      + .+ +.++.
T Consensus       252 ~~~~~~~~~~  261 (309)
T 2b9e_A          252 QNPGAFRLAP  261 (309)
T ss_dssp             TSTTTEEECC
T ss_pred             hCCCcEEEec
Confidence            4 45 76653

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=95.60  E-value=0.18  Score=48.37  Aligned_cols=136  Identities=15%  Similarity=0.131  Sum_probs=84.4

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      +++..+||=||=|.=.++..|++.+. .  +-.|.+|- ..+.+   .+++++....-.+-.-...-|...  .   +..
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~--~~~~~~D~-~~~~~---~a~~~~~~~~l~~~v~~~~~d~~~--~---~p~  267 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFP-G--LRGTLLER-PPVAE---EARELLTGRGLADRCEILPGDFFE--T---IPD  267 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCT-T--CEEEEEEC-HHHHH---HHHHHHHHTTCTTTEEEEECCTTT--C---CCS
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCC-C--CeEEEEcC-HHHHH---HHHHhhhhcCcCCceEEeccCCCC--C---CCC
Confidence            45678999999999999999999863 3  34456676 44443   255554432111112233345541  1   122


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC---------------------CCCC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT---------------------TVPF  159 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~---------------------g~PY  159 (389)
                       .||.|+...----+   .|         .-...+++.+..+|+|+|.+.|.-..                     +..+
T Consensus       268 -~~D~v~~~~vlh~~---~d---------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~  334 (369)
T 3gwz_A          268 -GADVYLIKHVLHDW---DD---------DDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAER  334 (369)
T ss_dssp             -SCSEEEEESCGGGS---CH---------HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCB
T ss_pred             -CceEEEhhhhhccC---CH---------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccC
Confidence             69999987654322   11         11346788899999999999885321                     1123


Q ss_pred             CcccHHHHHhhCCcEEEEEeeC
Q 016441          160 SNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       160 ~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      +.=+++++.+++||.+++..+.
T Consensus       335 t~~e~~~ll~~aGf~~~~~~~~  356 (369)
T 3gwz_A          335 SESEFAALLEKSGLRVERSLPC  356 (369)
T ss_dssp             CHHHHHHHHHTTTEEEEEEEEC
T ss_pred             CHHHHHHHHHHCCCeEEEEEEC
Confidence            3334667888999999998763

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=95.56  E-value=0.045  Score=50.01  Aligned_cols=123  Identities=15%  Similarity=0.162  Sum_probs=82.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeccccCCCCCCCCcC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG--TCILHGVDATTMELHPDLR   99 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G--v~VlfgVDATkL~~~~~Lk   99 (389)
                      .+..+||=+|=|.=.++.++++. + + .++|+-.|... +.    .+++|++.   .|  +.+.. -|+.+.     +.
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~-g-~-~v~gvDi~~~~-v~----~a~~n~~~---~~~~v~~~~-~d~~~~-----~~  181 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKL-G-G-KALGVDIDPMV-LP----QAEANAKR---NGVRPRFLE-GSLEAA-----LP  181 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-T-C-EEEEEESCGGG-HH----HHHHHHHH---TTCCCEEEE-SCHHHH-----GG
T ss_pred             CCCCEEEEecCCCcHHHHHHHHh-C-C-eEEEEECCHHH-HH----HHHHHHHH---cCCcEEEEE-CChhhc-----Cc
Confidence            46789999999999999988874 3 2 78887766432 21    24455542   34  33332 244331     23


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      ..+||.|+.|.+.-                 .+..++..+..+|+++|.+.++-...  ...-.+.++.+++||.+.+..
T Consensus       182 ~~~fD~Vv~n~~~~-----------------~~~~~l~~~~~~LkpgG~lils~~~~--~~~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          182 FGPFDLLVANLYAE-----------------LHAALAPRYREALVPGGRALLTGILK--DRAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             GCCEEEEEEECCHH-----------------HHHHHHHHHHHHEEEEEEEEEEEEEG--GGHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEECCcHH-----------------HHHHHHHHHHHHcCCCCEEEEEeecc--CCHHHHHHHHHHCCCEEEEEe
Confidence            46799999997531                 24678899999999999999864322  134467778888999998764


Q ss_pred             e
Q 016441          180 E  180 (389)
Q Consensus       180 ~  180 (389)
                      .
T Consensus       243 ~  243 (254)
T 2nxc_A          243 A  243 (254)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=95.52  E-value=0.18  Score=46.20  Aligned_cols=111  Identities=16%  Similarity=0.133  Sum_probs=73.0

Q ss_pred             ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCC
Q 016441           18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHP   96 (389)
Q Consensus        18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~   96 (389)
                      +....+..+||=||=|.=.++..|++.++.+..++++-++.  .+.+   .++.++   +..+..|- ..-|+.++..  
T Consensus        17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~--~~~~---~a~~~~---~~~~~~v~~~~~d~~~~~~--   86 (284)
T 3gu3_A           17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE--TLLA---EARELF---RLLPYDSEFLEGDATEIEL--   86 (284)
T ss_dssp             TSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCH--HHHH---HHHHHH---HSSSSEEEEEESCTTTCCC--
T ss_pred             HhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHH---HHHHHH---HhcCCceEEEEcchhhcCc--
Confidence            34456788999999999999999999875456777765542  2222   133333   33443443 3346666432  


Q ss_pred             CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441           97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                         ...||.|+.+..---.   .|           ...+++.+..+|+|+|.+.+.-..
T Consensus        87 ---~~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           87 ---NDKYDIAICHAFLLHM---TT-----------PETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ---SSCEEEEEEESCGGGC---SS-----------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ---CCCeeEEEECChhhcC---CC-----------HHHHHHHHHHHcCCCCEEEEEecc
Confidence               3589999998753221   12           137888899999999999877544

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=95.51  E-value=0.046  Score=46.14  Aligned_cols=106  Identities=16%  Similarity=0.095  Sum_probs=67.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++.   +.++++.-.+  +.+.+   .++.+++...-.++.+ ...|+.++..     ..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~-~~~d~~~~~~-----~~   96 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKN--AMSIA---NVERIKSIENLDNLHT-RVVDLNNLTF-----DR   96 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHHHHHTCTTEEE-EECCGGGCCC-----CC
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECC--HHHHH---HHHHHHHhCCCCCcEE-EEcchhhCCC-----CC
Confidence            35679999999999999999886   3466665444  23332   2444544332223443 4457777542     46


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      .||.|+.+.+.--. ..+           -...+++.+..+|+++|.+.|..
T Consensus        97 ~~D~v~~~~~l~~~-~~~-----------~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           97 QYDFILSTVVLMFL-EAK-----------TIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             CEEEEEEESCGGGS-CGG-----------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CceEEEEcchhhhC-CHH-----------HHHHHHHHHHHhcCCCeEEEEEE
Confidence            89999998643221 111           13578899999999999976543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=95.49  E-value=0.029  Score=49.66  Aligned_cols=106  Identities=20%  Similarity=0.181  Sum_probs=69.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~Lk~  100 (389)
                      .+..+||-||=|.=.++..|++.++ +..+++.-.+  .+..+   .|+.|++.+.-.. +.+ ...|+.+.-... ...
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~-~~~  124 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALP-EATIVSIERD--ERRYE---EAHKHVKALGLESRIEL-LFGDALQLGEKL-ELY  124 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCC--HHHHH---HHHHHHHHTTCTTTEEE-ECSCGGGSHHHH-TTS
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEE-EECCHHHHHHhc-ccC
Confidence            4677999999999999999998874 4566665444  33332   2555655432212 333 344666531100 013


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      ..||.|+.+.|..                 -...+|+.+..+|+++|.+.++
T Consensus       125 ~~fD~I~~~~~~~-----------------~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          125 PLFDVLFIDAAKG-----------------QYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             CCEEEEEEEGGGS-----------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCccEEEECCCHH-----------------HHHHHHHHHHHHcCCCeEEEEE
Confidence            6799999988742                 1457899999999999999886

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=95.41  E-value=0.33  Score=46.01  Aligned_cols=136  Identities=13%  Similarity=0.066  Sum_probs=86.1

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~Lk   99 (389)
                      +.+..+||=||=|.=.++..|++.+. ...+  |..|- ..+.+   .++++++...-.+ +++ ..-|+.++.    +.
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~--~~~D~-~~~~~---~a~~~~~~~~~~~~v~~-~~~d~~~~~----~~  255 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFP-ELDS--TILNL-PGAID---LVNENAAEKGVADRMRG-IAVDIYKES----YP  255 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCT-TCEE--EEEEC-GGGHH---HHHHHHHHTTCTTTEEE-EECCTTTSC----CC
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCC-CCeE--EEEec-HHHHH---HHHHHHHhcCCCCCEEE-EeCccccCC----CC
Confidence            46778999999999999999999863 3344  45566 44443   2555554322112 333 345776642    22


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC---------------------CCC
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT---------------------TVP  158 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~---------------------g~P  158 (389)
                        .+|.|+.++.--..   .         .+-...+++.+..+|+|+|.+.|.-..                     +..
T Consensus       256 --~~D~v~~~~vlh~~---~---------d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~  321 (359)
T 1x19_A          256 --EADAVLFCRILYSA---N---------EQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFS  321 (359)
T ss_dssp             --CCSEEEEESCGGGS---C---------HHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCC
T ss_pred             --CCCEEEEechhccC---C---------HHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCc
Confidence              23999987653322   1         123567889999999999999665311                     222


Q ss_pred             ----CCcccHHHHHhhCCcEEEEEeeCC
Q 016441          159 ----FSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       159 ----Y~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                          ++.=+++++.+++||..++..+..
T Consensus       322 ~~~~~t~~e~~~ll~~aGf~~v~~~~~~  349 (359)
T 1x19_A          322 VLGFKEQARYKEILESLGYKDVTMVRKY  349 (359)
T ss_dssp             CCCCCCGGGHHHHHHHHTCEEEEEEEET
T ss_pred             ccCCCCHHHHHHHHHHCCCceEEEEecC
Confidence                344456678888899888876643

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.40  E-value=0.055  Score=47.90  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=67.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=||=|.=.++..|++.   +.++++.  |-.+++.+   .++.++.... ..+.++ ..|+.++..     ...
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gv--D~s~~~l~---~a~~~~~~~~-~~v~~~-~~d~~~~~~-----~~~  105 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAER---GYEVVGL--DLHEEMLR---VARRKAKERN-LKIEFL-QGDVLEIAF-----KNE  105 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT---TCEEEEE--ESCHHHHH---HHHHHHHHTT-CCCEEE-ESCGGGCCC-----CSC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC---CCeEEEE--ECCHHHHH---HHHHHHHhcC-CceEEE-ECChhhccc-----CCC
Confidence            4579999999999999999885   3455554  53333332   2444443321 234444 448777642     257


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      ||.|+.++.....           .+..-+..+++.+..+|+|+|.+.++..
T Consensus       106 fD~v~~~~~~~~~-----------~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          106 FDAVTMFFSTIMY-----------FDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             EEEEEECSSGGGG-----------SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccEEEEcCCchhc-----------CCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            9999976532221           0122366889999999999999998764

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=95.39  E-value=0.18  Score=47.50  Aligned_cols=136  Identities=19%  Similarity=0.237  Sum_probs=84.4

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ..+..+||=||=|.=.++..|++.+.   ++.+|..|- .++.+   .+++|+....-. .++++ .-|+.+  .   +.
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~---~~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~-~~d~~~--~---~~  247 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAP---HVSATVLEM-AGTVD---TARSYLKDEGLSDRVDVV-EGDFFE--P---LP  247 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-TTHHH---HHHHHHHHTTCTTTEEEE-ECCTTS--C---CS
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCC---CCEEEEecC-HHHHH---HHHHHHHhcCCCCceEEE-eCCCCC--C---CC
Confidence            45678999999999999999998863   344555665 33333   255555432211 24443 346543  1   11


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC----C-------------------
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT----T-------------------  156 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~----g-------------------  156 (389)
                       ..||.|+.++.---.   .+         .-...+++.+..+|+|+|.+.|.-..    .                   
T Consensus       248 -~~~D~v~~~~vl~~~---~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (360)
T 1tw3_A          248 -RKADAIILSFVLLNW---PD---------HDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGG  314 (360)
T ss_dssp             -SCEEEEEEESCGGGS---CH---------HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSC
T ss_pred             -CCccEEEEcccccCC---CH---------HHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCC
Confidence             239999987653221   11         11357888889999999998876432    1                   


Q ss_pred             CCCCcccHHHHHhhCCcEEEEEeeCC
Q 016441          157 VPFSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       157 ~PY~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                      ..++.=+++++.+++||.+++..+..
T Consensus       315 ~~~t~~e~~~ll~~aGf~~~~~~~~~  340 (360)
T 1tw3_A          315 ALRTREKWDGLAASAGLVVEEVRQLP  340 (360)
T ss_dssp             CCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEEeCC
Confidence            11222345668889999999887664

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.38  E-value=0.0081  Score=56.14  Aligned_cols=108  Identities=19%  Similarity=0.219  Sum_probs=69.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-----------HhCCCEEEeccccC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-----------KKLGTCILHGVDAT   90 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-----------r~~Gv~VlfgVDAT   90 (389)
                      ....+||.||=|+=.++..|+++ + ..++++.-.|..  +.+   -|++|+ .+           ....++|+.+ ||.
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~--~i~---~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~-D~~  144 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDED--VIM---VSKDLI-KIDNGLLEAMLNGKHEKAKLTIG-DGF  144 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHH--HHH---HHHHHT-CTTTTHHHHHHTTCCSSEEEEES-CHH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHH--HHH---HHHHHH-hhccccccccccCCCCcEEEEEC-chH
Confidence            35679999999999999999986 3 457877776632  222   134444 22           1233555543 665


Q ss_pred             CCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHH-HHHHHHhhHhcccCCCeEEEEe
Q 016441           91 TMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSL-VRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus        91 kL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~L-L~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      +.-.   . ..+||.|+.|.|..-.  .         ...| ...||+.+..+|+++|.+.+..
T Consensus       145 ~~l~---~-~~~fD~Ii~d~~~~~~--~---------~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          145 EFIK---N-NRGFDVIIADSTDPVG--P---------AKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             HHHH---H-CCCEEEEEEECCCCC----------------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhc---c-cCCeeEEEECCCCCCC--c---------chhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            4211   0 3679999999985321  1         1112 3689999999999999998874

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.37  E-value=0.046  Score=51.01  Aligned_cols=126  Identities=14%  Similarity=0.166  Sum_probs=79.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH----hCCCEEEeccccCC-CCCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK----KLGTCILHGVDATT-MELHPD   97 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr----~~Gv~VlfgVDATk-L~~~~~   97 (389)
                      ...+||.||=|+=..+..+++..+ ...|++--.|.  ++.+   -|++|+..+.    ...++|+.+ ||.+ |..   
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~--~~v~---~ar~~~~~~~~~~~~~rv~v~~~-D~~~~l~~---  144 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDG--KVIE---YSKKFLPSIAGKLDDPRVDVQVD-DGFMHIAK---  144 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCH--HHHH---HHHHHCHHHHTTTTSTTEEEEES-CSHHHHHT---
T ss_pred             CCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCH--HHHH---HHHHHhHhhccccCCCceEEEEC-cHHHHHhh---
Confidence            467999999999999999987643 45677766663  2332   2455665542    234666655 6655 222   


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC----CcccHHHHHhhC
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF----SNWNIKELAIGS  171 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY----~sWnIe~LAa~a  171 (389)
                       ...+||.||.|.|....  ...        ......||+.+..+|+++|.+.+...  .|+    ..|.+.+..++.
T Consensus       145 -~~~~fD~Ii~d~~~~~~--~~~--------~l~~~~~~~~~~~~L~pgG~lv~~~~--~~~~~~~~~~~~~~~l~~~  209 (275)
T 1iy9_A          145 -SENQYDVIMVDSTEPVG--PAV--------NLFTKGFYAGIAKALKEDGIFVAQTD--NPWFTPELITNVQRDVKEI  209 (275)
T ss_dssp             -CCSCEEEEEESCSSCCS--CCC--------CCSTTHHHHHHHHHEEEEEEEEEECC--CTTTCHHHHHHHHHHHHTT
T ss_pred             -CCCCeeEEEECCCCCCC--cch--------hhhHHHHHHHHHHhcCCCcEEEEEcC--CccccHHHHHHHHHHHHHh
Confidence             13679999999887321  110        00124799999999999999988743  332    135555544444

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=95.32  E-value=0.21  Score=43.83  Aligned_cols=123  Identities=14%  Similarity=0.151  Sum_probs=74.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||-+|=|.=.++..|++.   +..+++.-.+  ++..+   .+++|++...-..-.....-|+.+..    +...
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~  157 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAV--EEFYK---TAQKNLKKFNLGKNVKFFNVDFKDAE----VPEG  157 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSC--HHHHH---HHHHHHHHTTCCTTEEEECSCTTTSC----CCTT
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecC--HHHHH---HHHHHHHHcCCCCcEEEEEcChhhcc----cCCC
Confidence            46789999999999999999987   3567666554  22222   25556544321011223344555432    1346


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWC  178 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~  178 (389)
                      .||.|+.|.|..                   ..+++.+.++|+++|.+.+......  ....+.++.++. +.-.+.
T Consensus       158 ~~D~v~~~~~~~-------------------~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~-f~~~~~  212 (248)
T 2yvl_A          158 IFHAAFVDVREP-------------------WHYLEKVHKSLMEGAPVGFLLPTAN--QVIKLLESIENY-FGNLEV  212 (248)
T ss_dssp             CBSEEEECSSCG-------------------GGGHHHHHHHBCTTCEEEEEESSHH--HHHHHHHHSTTT-EEEEEE
T ss_pred             cccEEEECCcCH-------------------HHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHhh-CCcceE
Confidence            799999987632                   2457888999999999999875432  122344444444 554443

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=95.30  E-value=0.047  Score=49.32  Aligned_cols=145  Identities=17%  Similarity=0.161  Sum_probs=88.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EEEeccccCCCCCCCCcCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT--CILHGVDATTMELHPDLRT  100 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv--~VlfgVDATkL~~~~~Lk~  100 (389)
                      ++++||=||=|.=.++..||+.. .+..+++.-... +.+.+.=..|..++   ++.|.  ..+..-|+..+...  . .
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~-~~ml~~A~~A~~~~---~~~~~~~v~~~~~d~~~l~~~--~-~   95 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVK-ENLFDISKKIIKKP---SKGGLSNVVFVIAAAESLPFE--L-K   95 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCC-GGGHHHHHHHTSCG---GGTCCSSEEEECCBTTBCCGG--G-T
T ss_pred             CCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCH-HHHHHHHHHHHHHH---HHcCCCCeEEEEcCHHHhhhh--c-c
Confidence            46689999999999999998754 344566554443 33322100122222   23342  34456788887321  1 2


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE--EecCC----------CC--CCcc----
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV--SHKTT----------VP--FSNW----  162 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV--TLk~g----------~P--Y~sW----  162 (389)
                      ..+|.|..|||..-         .....+.-...+|+.+..+|+|||.+.+  +..+.          .|  ...|    
T Consensus        96 d~v~~i~~~~~~~~---------~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (225)
T 3p2e_A           96 NIADSISILFPWGT---------LLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSE  166 (225)
T ss_dssp             TCEEEEEEESCCHH---------HHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSH
T ss_pred             CeEEEEEEeCCCcH---------HhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchH
Confidence            67899999998321         0111111124688999999999999998  22221          11  1234    


Q ss_pred             cHHHHHhhCCcEEEEEeeCCCC
Q 016441          163 NIKELAIGSSLSLIWCSEFKIE  184 (389)
Q Consensus       163 nIe~LAa~aGL~L~~~~~F~~~  184 (389)
                      ++..+.+++||.+.+...|+..
T Consensus       167 el~~~l~~aGf~v~~~~~~~~~  188 (225)
T 3p2e_A          167 QYKAELSNSGFRIDDVKELDNE  188 (225)
T ss_dssp             HHHHHHHHHTCEEEEEEEECHH
T ss_pred             HHHHHHHHcCCCeeeeeecCHH
Confidence            3777888999999999988854

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=95.28  E-value=0.023  Score=54.10  Aligned_cols=111  Identities=19%  Similarity=0.251  Sum_probs=70.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH----HhCCCEEEeccccCC-CCCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL----KKLGTCILHGVDATT-MELHP   96 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L----r~~Gv~VlfgVDATk-L~~~~   96 (389)
                      ....+||.||=|+=.+++.|+++. ....|++.-.|.  ++.+   -|++|+..+    ....++++.+ ||.+ |..  
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~--~~i~---~ar~~~~~~~~~~~~~rv~v~~~-Da~~~l~~--  164 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDE--DVIQ---VSKKFLPGMAIGYSSSKLTLHVG-DGFEFMKQ--  164 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCH--HHHH---HHHHHCHHHHGGGGCTTEEEEES-CHHHHHHT--
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCH--HHHH---HHHHHhHHhhcccCCCcEEEEEC-cHHHHHhh--
Confidence            356799999999999999999764 345677666653  2332   245555543    2344666544 6654 222  


Q ss_pred             CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441           97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                        ...+||.||.|.|..-.  ..        .......||+.+..+|+++|.+.+..
T Consensus       165 --~~~~fD~Ii~d~~~~~~--~~--------~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          165 --NQDAFDVIITDSSDPMG--PA--------ESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             --CSSCEEEEEEECC---------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             --CCCCceEEEECCCCCCC--cc--------hhhhHHHHHHHHHhccCCCeEEEEec
Confidence              23679999999885421  10        11124589999999999999998765

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=95.24  E-value=0.06  Score=47.22  Aligned_cols=111  Identities=16%  Similarity=0.138  Sum_probs=65.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=+|=|.=.+++.++...  ...|+|.  |-.+++.+   .++.|++...-..++++ .-|+.+.-.   .....
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~v--D~s~~~l~---~a~~~~~~~~~~~v~~~-~~D~~~~~~---~~~~~  122 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY--AAGATLI--EMDRAVSQ---QLIKNLATLKAGNARVV-NSNAMSFLA---QKGTP  122 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEE--CSCHHHHH---HHHHHHHHTTCCSEEEE-CSCHHHHHS---SCCCC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC--CCEEEEE--ECCHHHHH---HHHHHHHHcCCCcEEEE-ECCHHHHHh---hcCCC
Confidence            56799999888888888776652  2355554  53344433   25666654432234443 446665211   12467


Q ss_pred             cceEEEcCC-CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441          103 FDRIIFNFP-HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP  158 (389)
Q Consensus       103 FDrIIFNFP-H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  158 (389)
                      ||.|+.|.| |.+.            ...++..+.+  ..+|+++|.+.|+......
T Consensus       123 fD~V~~~~p~~~~~------------~~~~l~~l~~--~~~L~pgG~l~i~~~~~~~  165 (202)
T 2fpo_A          123 HNIVFVDPPFRRGL------------LEETINLLED--NGWLADEALIYVESEVENG  165 (202)
T ss_dssp             EEEEEECCSSSTTT------------HHHHHHHHHH--TTCEEEEEEEEEEEEGGGC
T ss_pred             CCEEEECCCCCCCc------------HHHHHHHHHh--cCccCCCcEEEEEECCCcc
Confidence            999999999 4321            1223333322  4579999999998876543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=95.22  E-value=0.16  Score=44.75  Aligned_cols=124  Identities=15%  Similarity=0.069  Sum_probs=81.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCC-CCCCCCcC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATT-MELHPDLR   99 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATk-L~~~~~Lk   99 (389)
                      .++.+||=||=|.=.++..||+.   +..++|.-.+  ++..+   .|++|++.+.-. ++.++ .-|+.+ +..     
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s--~~~~~---~a~~~~~~~g~~~~v~~~-~~d~~~~~~~-----  119 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPR--ADRIE---NIQKNIDTYGLSPRMRAV-QGTAPAALAD-----  119 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEE-ESCTTGGGTT-----
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCC--HHHHH---HHHHHHHHcCCCCCEEEE-eCchhhhccc-----
Confidence            46789999999999999999986   3466665444  33332   366666554333 34443 346665 221     


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      ...||.|+.+.   +.            +   .. +++.+..+|+++|.+.++..+..  +...+.+..++.|+.+.+..
T Consensus       120 ~~~~D~v~~~~---~~------------~---~~-~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~~~g~~i~~i~  178 (204)
T 3njr_A          120 LPLPEAVFIGG---GG------------S---QA-LYDRLWEWLAPGTRIVANAVTLE--SETLLTQLHARHGGQLLRID  178 (204)
T ss_dssp             SCCCSEEEECS---CC------------C---HH-HHHHHHHHSCTTCEEEEEECSHH--HHHHHHHHHHHHCSEEEEEE
T ss_pred             CCCCCEEEECC---cc------------c---HH-HHHHHHHhcCCCcEEEEEecCcc--cHHHHHHHHHhCCCcEEEEE
Confidence            24699999765   21            1   23 78889999999999999876542  44566666777788777654


Q ss_pred             e
Q 016441          180 E  180 (389)
Q Consensus       180 ~  180 (389)
                      .
T Consensus       179 ~  179 (204)
T 3njr_A          179 I  179 (204)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=95.21  E-value=0.021  Score=47.03  Aligned_cols=111  Identities=14%  Similarity=0.180  Sum_probs=68.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ++.+||=+|=|.=.++..|++..   .++++  .|-.+++.+   .++.|++...- .+.++ .-|+.+......-...+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~---~~v~~--vD~~~~~~~---~a~~~~~~~~~-~~~~~-~~d~~~~~~~~~~~~~~  110 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG---WEAVL--VEKDPEAVR---LLKENVRRTGL-GARVV-ALPVEVFLPEAKAQGER  110 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT---CEEEE--ECCCHHHHH---HHHHHHHHHTC-CCEEE-CSCHHHHHHHHHHTTCC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC---CeEEE--EeCCHHHHH---HHHHHHHHcCC-ceEEE-eccHHHHHHhhhccCCc
Confidence            67899999999999999998762   23554  453333433   25666665433 45444 44665521110011247


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                      ||.|+.|.|.. . ..          .+++..+.+  ..+|+++|.+.++.....
T Consensus       111 ~D~i~~~~~~~-~-~~----------~~~~~~~~~--~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          111 FTVAFMAPPYA-M-DL----------AALFGELLA--SGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             EEEEEECCCTT-S-CT----------THHHHHHHH--HTCEEEEEEEEEEEETTS
T ss_pred             eEEEEECCCCc-h-hH----------HHHHHHHHh--hcccCCCcEEEEEeCCcc
Confidence            99999998865 2 11          122333333  699999999999887654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=95.11  E-value=0.14  Score=43.64  Aligned_cols=127  Identities=14%  Similarity=0.014  Sum_probs=81.5

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCC-CCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC----
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGS-ASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH----   95 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs-~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~----   95 (389)
                      ..+..+||=||=|.=.++..|++.++. ...|+|.-+....                ...++.++. -|++++...    
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------------~~~~v~~~~-~d~~~~~~~~~~~   82 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------------PIPNVYFIQ-GEIGKDNMNNIKN   82 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------------CCTTCEEEE-CCTTTTSSCCC--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------------CCCCceEEE-ccccchhhhhhcc
Confidence            456789999999999999999988753 4578887665521                013566554 377665410    


Q ss_pred             -C----------------CcCCCCcceEEEcCC-CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441           96 -P----------------DLRTRKFDRIIFNFP-HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus        96 -~----------------~Lk~~~FDrIIFNFP-H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                       +                .+....||.|+.|++ |..+  ...  .......++....++.+..+|+++|.+.++...+.
T Consensus        83 ~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g--~~~--~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  158 (201)
T 2plw_A           83 INYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIG--NKI--DDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS  158 (201)
T ss_dssp             ---------CHHHHHHHHHHTTCCEEEEEECCCCCCCS--CHH--HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             ccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCC--Ccc--cCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC
Confidence             0                033468999999973 4321  111  11222345677889999999999999999876653


Q ss_pred             CCCcccHHHHHhh
Q 016441          158 PFSNWNIKELAIG  170 (389)
Q Consensus       158 PY~sWnIe~LAa~  170 (389)
                        +.+.+....+.
T Consensus       159 --~~~~l~~~l~~  169 (201)
T 2plw_A          159 --QTNNLKTYLKG  169 (201)
T ss_dssp             --THHHHHHHHHT
T ss_pred             --CHHHHHHHHHH
Confidence              34455544433

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=95.10  E-value=0.0096  Score=58.08  Aligned_cols=114  Identities=17%  Similarity=0.150  Sum_probs=71.8

Q ss_pred             CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcc
Q 016441           25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFD  104 (389)
Q Consensus        25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FD  104 (389)
                      .+||.||=|+-++++.|++.+. ...|++.-+|  .++.+.   +++++.......++|+. -||.+.-.  .+...+||
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p-~~~v~~VEid--p~vi~~---Ar~~~~~~~~~rv~v~~-~Da~~~l~--~~~~~~fD  161 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYP-QSRNTVVELD--AELARL---SREWFDIPRAPRVKIRV-DDARMVAE--SFTPASRD  161 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHST-TCEEEEEESC--HHHHHH---HHHHSCCCCTTTEEEEE-SCHHHHHH--TCCTTCEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCC-CcEEEEEECC--HHHHHH---HHHhccccCCCceEEEE-CcHHHHHh--hccCCCCC
Confidence            3899999999999999999774 3467665555  333321   33443221223355544 46655321  12346899


Q ss_pred             eEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441          105 RIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus       105 rIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                      .||.|.+....  ...        ...-..||+.|..+|+++|.+.+.+....
T Consensus       162 vIi~D~~~~~~--~~~--------~L~t~efl~~~~r~LkpgGvlv~~~~~~~  204 (317)
T 3gjy_A          162 VIIRDVFAGAI--TPQ--------NFTTVEFFEHCHRGLAPGGLYVANCGDHS  204 (317)
T ss_dssp             EEEECCSTTSC--CCG--------GGSBHHHHHHHHHHEEEEEEEEEEEEECT
T ss_pred             EEEECCCCccc--cch--------hhhHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence            99999654321  110        00125899999999999999988886543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=95.06  E-value=0.077  Score=46.94  Aligned_cols=149  Identities=12%  Similarity=0.090  Sum_probs=86.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH--HHHHHhhhhH---------HHHHHHHHhCC----------
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY--DDVIQKYKRA---------KSNLDNLKKLG----------   80 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe--eeL~~KY~~A---------~~Ni~~Lr~~G----------   80 (389)
                      .+..+||=||=|.=.++..|++..  ...++++-+...  +.+.++.+..         ...+..++...          
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACES--FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcc--cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            345689999998877777777642  135666654321  1111111110         00111111110          


Q ss_pred             ---CEEEeccccCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441           81 ---TCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus        81 ---v~VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                         +.-....|++++..........||.|+.++-.-.          +..+..-...+++.+..+|+|||.+.++...+.
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~----------~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  202 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDA----------ACPDLPAYRTALRNLGSLLKPGGFLVMVDALKS  202 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH----------HCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhh----------hcCChHHHHHHHHHHHhhCCCCcEEEEEecCCC
Confidence               3135567888765322233478999998863211          111223356788999999999999988764332


Q ss_pred             -------------CCCcccHHHHHhhCCcEEEEEeeCC
Q 016441          158 -------------PFSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       158 -------------PY~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                                   +++.=.+.++.+++||.+++...+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          203 SYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             CEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             ceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence                         1222267788899999999876654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=95.05  E-value=0.1  Score=47.21  Aligned_cols=108  Identities=16%  Similarity=0.109  Sum_probs=69.7

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCC-CCCCCC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATT-MELHPD   97 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATk-L~~~~~   97 (389)
                      ...+..+||=||=|.=.++..||+.++.+..|++.-.+  ++..+   .|+.|++...-. .+++ ..-|+.+ +...  
T Consensus        60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~---~a~~~~~~~g~~~~v~~-~~~d~~~~l~~~--  131 (248)
T 3tfw_A           60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEAD--AHHAQ---VARENLQLAGVDQRVTL-REGPALQSLESL--  131 (248)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECC--HHHHH---HHHHHHHHTTCTTTEEE-EESCHHHHHHTC--
T ss_pred             hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEE-EEcCHHHHHHhc--
Confidence            34567899999999999999999987544566665444  33332   256666543322 2333 3446655 2221  


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      -....||.|+.+.+...                 ...||+.+..+|++||.|.+.
T Consensus       132 ~~~~~fD~V~~d~~~~~-----------------~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          132 GECPAFDLIFIDADKPN-----------------NPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             CSCCCCSEEEECSCGGG-----------------HHHHHHHHHHTCCTTCEEEEE
T ss_pred             CCCCCeEEEEECCchHH-----------------HHHHHHHHHHhcCCCeEEEEe
Confidence            11358999999764211                 235899999999999988775

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=95.03  E-value=0.049  Score=47.60  Aligned_cols=111  Identities=14%  Similarity=0.108  Sum_probs=69.2

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ...+..+||=||=|.=.++..||+.++.+..+++.-.+  ++..+   .++.|++...-.+-.-+..-|+.+.-....-.
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  129 (223)
T 3duw_A           55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEAS--EKHAD---IARSNIERANLNDRVEVRTGLALDSLQQIENE  129 (223)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT
T ss_pred             HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc
Confidence            34567899999999999999999987534566655544  22222   35666654332221233444665421110001


Q ss_pred             -CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          100 -TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       100 -~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                       ...||.|+.+.++..                 ...+|..+..+|+++|.|.+.
T Consensus       130 ~~~~fD~v~~d~~~~~-----------------~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          130 KYEPFDFIFIDADKQN-----------------NPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             TCCCCSEEEECSCGGG-----------------HHHHHHHHHHTCCTTCEEEEE
T ss_pred             CCCCcCEEEEcCCcHH-----------------HHHHHHHHHHhcCCCcEEEEe
Confidence             157999999866221                 247889999999999977764

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=95.02  E-value=0.096  Score=43.28  Aligned_cols=121  Identities=12%  Similarity=0.056  Sum_probs=79.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=+|=|.=.++..|++   ...+++++-.+  .++.+   .++.|++...-..+.+ ...|+.+     .+...
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~~~-~~~d~~~-----~~~~~   99 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYL--DGAIE---VTKQNLAKFNIKNCQI-IKGRAED-----VLDKL   99 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECS--HHHHH---HHHHHHHHTTCCSEEE-EESCHHH-----HGGGC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCC--HHHHH---HHHHHHHHcCCCcEEE-EECCccc-----cccCC
Confidence            4677999999999999999988   34567776554  23332   2455554332112333 3445544     12336


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWC  178 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~  178 (389)
                      .||.|+.+.|  .     +           +..+++.+..+  ++|.+.++....  .....+.++.++.|+.+...
T Consensus       100 ~~D~i~~~~~--~-----~-----------~~~~l~~~~~~--~gG~l~~~~~~~--~~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          100 EFNKAFIGGT--K-----N-----------IEKIIEILDKK--KINHIVANTIVL--ENAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             CCSEEEECSC--S-----C-----------HHHHHHHHHHT--TCCEEEEEESCH--HHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEECCc--c-----c-----------HHHHHHHHhhC--CCCEEEEEeccc--ccHHHHHHHHHHcCCeEEEE
Confidence            8999999999  1     1           34667777777  999999987543  34567788888888776654

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=95.00  E-value=0.024  Score=55.00  Aligned_cols=113  Identities=19%  Similarity=0.257  Sum_probs=73.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH----HhCCCEEEeccccCCCCCCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL----KKLGTCILHGVDATTMELHPD   97 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L----r~~Gv~VlfgVDATkL~~~~~   97 (389)
                      ....+||-||=|+=.++..|++.. ....|++.-.|.  ++.+   -|++|+..+    ....++++.+ |+.+.-.  .
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~--~~l~---~Ar~~~~~~~~gl~~~rv~~~~~-D~~~~l~--~  189 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDK--MVVD---VSKQFFPDVAIGYEDPRVNLVIG-DGVAFLK--N  189 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCH--HHHH---HHHHHCHHHHGGGGSTTEEEEES-CHHHHHH--T
T ss_pred             CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCH--HHHH---HHHHHHHhhccccCCCcEEEEEC-CHHHHHH--h
Confidence            456799999999999999999864 245777776653  2222   255566554    2334565543 6654311  1


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      +....||.||.|.++.-.  ..       .+ .....||+.+..+|+++|.+.+..
T Consensus       190 ~~~~~fDlIi~d~~~p~~--~~-------~~-l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          190 AAEGSYDAVIVDSSDPIG--PA-------KE-LFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             SCTTCEEEEEECCCCTTS--GG-------GG-GGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCccEEEECCCCccC--cc-------hh-hhHHHHHHHHHHhcCCCcEEEEec
Confidence            123679999999875321  11       11 113689999999999999988753

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=94.97  E-value=0.024  Score=49.72  Aligned_cols=111  Identities=14%  Similarity=0.163  Sum_probs=72.0

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhC----CCCcEEeccccCHHHHHHhhhhHHHHHHHHH-----hCCCEEEeccccC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFG----SASNICASSLDSYDDVIQKYKRAKSNLDNLK-----KLGTCILHGVDAT   90 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~g----s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-----~~Gv~VlfgVDAT   90 (389)
                      ...+..+||-||=|.=.++..|++..+    ....+++.-.+  +++.+   .+++|++...     ...+.+. ..|+.
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~~~~~v~~~-~~d~~  150 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERV--KDLVN---FSLENIKRDKPELLKIDNFKII-HKNIY  150 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESC--HHHHH---HHHHHHHHHCGGGGSSTTEEEE-ECCGG
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCC--HHHHH---HHHHHHHHcCccccccCCEEEE-ECChH
Confidence            345678999999999999999998764    33467666544  33333   3566666553     2234443 45776


Q ss_pred             CCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441           91 TMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus        91 kL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      +...........||.|+.+.+.-.                    ++..+..+|+++|.+.++.-.+
T Consensus       151 ~~~~~~~~~~~~fD~I~~~~~~~~--------------------~~~~~~~~LkpgG~lv~~~~~~  196 (227)
T 2pbf_A          151 QVNEEEKKELGLFDAIHVGASASE--------------------LPEILVDLLAENGKLIIPIEED  196 (227)
T ss_dssp             GCCHHHHHHHCCEEEEEECSBBSS--------------------CCHHHHHHEEEEEEEEEEEEET
T ss_pred             hcccccCccCCCcCEEEECCchHH--------------------HHHHHHHhcCCCcEEEEEEccC
Confidence            632000022467999998866432                    2366788999999999998754

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=94.95  E-value=0.31  Score=45.38  Aligned_cols=134  Identities=14%  Similarity=0.152  Sum_probs=83.1

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      +++ .+||=||=|.=.++..|++.+. ...++  ..|- ..+.+   .+++++....- ..++++. -|+.+ .    +.
T Consensus       166 ~~~-~~vlDvG~G~G~~~~~l~~~~p-~~~~~--~~D~-~~~~~---~a~~~~~~~~~~~~v~~~~-~d~~~-~----~~  231 (334)
T 2ip2_A          166 FRG-RSFVDVGGGSGELTKAILQAEP-SARGV--MLDR-EGSLG---VARDNLSSLLAGERVSLVG-GDMLQ-E----VP  231 (334)
T ss_dssp             CTT-CEEEEETCTTCHHHHHHHHHCT-TCEEE--EEEC-TTCTH---HHHHHTHHHHHTTSEEEEE-SCTTT-C----CC
T ss_pred             CCC-CEEEEeCCCchHHHHHHHHHCC-CCEEE--EeCc-HHHHH---HHHHHHhhcCCCCcEEEec-CCCCC-C----CC
Confidence            455 8999999999999999998873 33454  4554 33332   24455543322 2344443 35544 1    22


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC----------------------CC
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT----------------------TV  157 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~----------------------g~  157 (389)
                       ..||.|+.+..---.   .+         .-...+++.+..+|+|+|.+.|.-..                      |.
T Consensus       232 -~~~D~v~~~~vl~~~---~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (334)
T 2ip2_A          232 -SNGDIYLLSRIIGDL---DE---------AASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGR  298 (334)
T ss_dssp             -SSCSEEEEESCGGGC---CH---------HHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCC
T ss_pred             -CCCCEEEEchhccCC---CH---------HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCc
Confidence             469999987653221   11         11357788899999999999887321                      11


Q ss_pred             CCCcccHHHHHhhCCcEEEEEeeC
Q 016441          158 PFSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       158 PY~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      .++.=+++++.+++||..++..+-
T Consensus       299 ~~t~~e~~~ll~~aGf~~~~~~~~  322 (334)
T 2ip2_A          299 HRTTEEVVDLLGRGGFAVERIVDL  322 (334)
T ss_dssp             CCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCceeEEEEC
Confidence            122234566888899998887653

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=94.93  E-value=0.028  Score=48.67  Aligned_cols=109  Identities=17%  Similarity=0.126  Sum_probs=71.5

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      -.+..+||=||=|.=.++..|++..   .++++.-.+  +++.+.   ++.++.   ..+-.-+...|+.++.     ..
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s--~~~~~~---a~~~~~---~~~~~~~~~~d~~~~~-----~~  112 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVM--PRAIGR---ACQRTK---RWSHISWAATDILQFS-----TA  112 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESC--HHHHHH---HHHHTT---TCSSEEEEECCTTTCC-----CS
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECC--HHHHHH---HHHhcc---cCCCeEEEEcchhhCC-----CC
Confidence            3456789999999999999998763   356664443  333321   333332   2333344566887765     24


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      ..||.|+.+...--.   .        +...+..+++.+..+|+++|.+.++....
T Consensus       113 ~~fD~v~~~~~l~~~---~--------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          113 ELFDLIVVAEVLYYL---E--------DMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             CCEEEEEEESCGGGS---S--------SHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CCccEEEEccHHHhC---C--------CHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            789999998543322   1        12345678999999999999999976543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=94.91  E-value=0.079  Score=45.60  Aligned_cols=127  Identities=17%  Similarity=0.181  Sum_probs=75.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ++.+||=+|=|.=.++..|++. + ...++|.-.+.  .+.+   .++.|++...- ++.++ .-|+.++.       ..
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~--~~~~---~a~~~~~~~~~-~~~~~-~~d~~~~~-------~~  112 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDK--EAVD---VLIENLGEFKG-KFKVF-IGDVSEFN-------SR  112 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCH--HHHH---HHHHHTGGGTT-SEEEE-ESCGGGCC-------CC
T ss_pred             CcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCH--HHHH---HHHHHHHHcCC-CEEEE-ECchHHcC-------CC
Confidence            5679999999999999999876 3 33566665542  2222   24555443221 34444 34777753       37


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeC
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      ||.|+.|.|-.-. ..           .+...|++.+..++   |.+.++.. ..+-..-.+.+.+++.|+.+.....+
T Consensus       113 ~D~v~~~~p~~~~-~~-----------~~~~~~l~~~~~~l---~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~  175 (207)
T 1wy7_A          113 VDIVIMNPPFGSQ-RK-----------HADRPFLLKAFEIS---DVVYSIHL-AKPEVRRFIEKFSWEHGFVVTHRLTT  175 (207)
T ss_dssp             CSEEEECCCCSSS-ST-----------TTTHHHHHHHHHHC---SEEEEEEE-CCHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCEEEEcCCCccc-cC-----------CchHHHHHHHHHhc---CcEEEEEe-CCcCCHHHHHHHHHHCCCeEEEEEEE
Confidence            9999999994332 11           11235566777777   55555442 12223334666778889877654443

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=94.80  E-value=0.16  Score=46.10  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=66.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++ .  +..++++-.+  .++.+.   +..++     .++.+. ..|+..+.    + ..
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~-~--~~~v~gvD~s--~~~~~~---a~~~~-----~~~~~~-~~d~~~~~----~-~~  116 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQ-S--GAEVLGTDNA--ATMIEK---ARQNY-----PHLHFD-VADARNFR----V-DK  116 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH-T--TCEEEEEESC--HHHHHH---HHHHC-----TTSCEE-ECCTTTCC----C-SS
T ss_pred             CCCCEEEEecCCCCHHHHHHHh-C--CCeEEEEECC--HHHHHH---HHhhC-----CCCEEE-ECChhhCC----c-CC
Confidence            4567999999999999999988 2  3466665443  222221   22222     345544 34777654    2 36


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      .||.|+.++.---.   .|           ...+++.+..+|+|||.+.++...
T Consensus       117 ~fD~v~~~~~l~~~---~d-----------~~~~l~~~~~~LkpgG~l~~~~~~  156 (279)
T 3ccf_A          117 PLDAVFSNAMLHWV---KE-----------PEAAIASIHQALKSGGRFVAEFGG  156 (279)
T ss_dssp             CEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CcCEEEEcchhhhC---cC-----------HHHHHHHHHHhcCCCcEEEEEecC
Confidence            89999998753321   11           236888999999999999987654

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=94.75  E-value=0.038  Score=48.21  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=69.0

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCC-
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPD-   97 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~-   97 (389)
                      ...+..+||=||=|.=.++..|++.++.+..|++.-.+  ++..+   .++.+++...-.+ +.++ .-|+.+.-.... 
T Consensus        61 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~  134 (225)
T 3tr6_A           61 KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVD--EKSTA---LAKEYWEKAGLSDKIGLR-LSPAKDTLAELIH  134 (225)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEE-ESCHHHHHHHHHT
T ss_pred             HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCC--HHHHH---HHHHHHHHCCCCCceEEE-eCCHHHHHHHhhh
Confidence            34567899999999999999999887544566665544  33322   2555555433222 3333 345543211000 


Q ss_pred             -cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           98 -LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        98 -Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                       .....||.|+.+.|...                 ...+|+.+..+|++||.|.+.
T Consensus       135 ~~~~~~fD~v~~~~~~~~-----------------~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          135 AGQAWQYDLIYIDADKAN-----------------TDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             TTCTTCEEEEEECSCGGG-----------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCCccEEEECCCHHH-----------------HHHHHHHHHHhcCCCcEEEEe
Confidence             01168999998876221                 335888999999999999874

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=94.66  E-value=0.18  Score=46.23  Aligned_cols=110  Identities=18%  Similarity=0.202  Sum_probs=71.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCC--Cc
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHP--DL   98 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~--~L   98 (389)
                      .+..+||=||=|.=.++..|++.+....+++++-.+  +.+.+   .++.+++.... ..-.-+...|+.++....  .+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  109 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLS--ATMIK---TAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSV  109 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESC--HHHHH---HHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCC--HHHHH---HHHHHHHhccCCCCceEEEEcCHHhCCccccccc
Confidence            367899999999999999999876445677776554  22332   25555544311 112233456777764211  12


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV  151 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV  151 (389)
                      ....||.|+.++.---.    +           ...+++.+..+|++||.+.|
T Consensus       110 ~~~~fD~V~~~~~l~~~----~-----------~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          110 DKQKIDMITAVECAHWF----D-----------FEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             TSSCEEEEEEESCGGGS----C-----------HHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCeeEEeHhhHHHHh----C-----------HHHHHHHHHHhcCCCcEEEE
Confidence            23789999998642211    1           45789999999999999987

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=94.66  E-value=0.088  Score=50.58  Aligned_cols=106  Identities=18%  Similarity=0.171  Sum_probs=71.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=||=|.=.++..|++. + ...++|.-..  + +.+   .|+.+++...-.+..-+..-|+.++.    +...
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s--~-~l~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~  132 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS--S-ISD---YAVKIVKANKLDHVVTIIKGKVEEVE----LPVE  132 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS--T-HHH---HHHHHHHHTTCTTTEEEEESCTTTCC----CSSS
T ss_pred             CCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH--H-HHH---HHHHHHHHcCCCCcEEEEECcHHHcc----CCCC
Confidence            45789999999999999999987 3 4578887665  2 332   25555544332232345566777763    3457


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVH  150 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIH  150 (389)
                      +||.|+.+.+.......           ..+..++..+..+|+|+|.+.
T Consensus       133 ~fD~Iis~~~~~~l~~~-----------~~~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          133 KVDIIISEWMGYCLFYE-----------SMLNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             CEEEEEECCCBBTBTBT-----------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             ceEEEEEccccccccCc-----------hhHHHHHHHHHHhCCCCCEEc
Confidence            89999999764443121           235578888899999999875

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=94.63  E-value=0.052  Score=52.49  Aligned_cols=127  Identities=13%  Similarity=0.089  Sum_probs=82.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEe----ccccCCCCCCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILH----GVDATTMELHPD   97 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vlf----gVDATkL~~~~~   97 (389)
                      .+..+||=||=|+=.++..|++.   +.++++.  |-.+.+          ++..++.|+.+..    ..|+..+.    
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gv--D~s~~~----------~~~a~~~~~~~~~~~~~~~~~~~l~----  166 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA---GVRHLGF--EPSSGV----------AAKAREKGIRVRTDFFEKATADDVR----  166 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT---TCEEEEE--CCCHHH----------HHHHHTTTCCEECSCCSHHHHHHHH----
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCcEEEE--CCCHHH----------HHHHHHcCCCcceeeechhhHhhcc----
Confidence            36779999999999999999875   2355554  432222          2233444554442    12232221    


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC-------CC----------CCC
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT-------TV----------PFS  160 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~-------g~----------PY~  160 (389)
                      +....||.|+.++----.   .|           ...||+.+..+|+|+|.+.++...       ..          .|+
T Consensus       167 ~~~~~fD~I~~~~vl~h~---~d-----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s  232 (416)
T 4e2x_A          167 RTEGPANVIYAANTLCHI---PY-----------VQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFS  232 (416)
T ss_dssp             HHHCCEEEEEEESCGGGC---TT-----------HHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECC
T ss_pred             cCCCCEEEEEECChHHhc---CC-----------HHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCC
Confidence            234789999998542211   11           468999999999999999997542       00          022


Q ss_pred             cccHHHHHhhCCcEEEEEeeC
Q 016441          161 NWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       161 sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      .-.+..+++++||.+++...+
T Consensus       233 ~~~l~~ll~~aGf~~~~~~~~  253 (416)
T 4e2x_A          233 ATSVQGMAQRCGFELVDVQRL  253 (416)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCEEEEEEEc
Confidence            236888999999999988765

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=94.53  E-value=0.27  Score=42.44  Aligned_cols=106  Identities=16%  Similarity=0.110  Sum_probs=68.9

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      -.+..+||-||=|.=.++..|++..+....++++-.+  +++.+   .+++++..+.-.++.+ ..-|+...   . ...
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~v~~-~~~d~~~~---~-~~~  144 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERI--PELAE---KAERTLRKLGYDNVIV-IVGDGTLG---Y-EPL  144 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESC--HHHHH---HHHHHHHHHTCTTEEE-EESCGGGC---C-GGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHcCCCCeEE-EECCcccC---C-CCC
Confidence            3567899999999999999999887543567666444  33333   2555665543223443 33455321   1 124


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      ..||.|+.+++--..                    ...+..+|+++|.+.++..++
T Consensus       145 ~~fD~v~~~~~~~~~--------------------~~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          145 APYDRIYTTAAGPKI--------------------PEPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             CCEEEEEESSBBSSC--------------------CHHHHHTEEEEEEEEEEESSS
T ss_pred             CCeeEEEECCchHHH--------------------HHHHHHHcCCCcEEEEEECCC
Confidence            679999999764322                    026788999999999998655

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=94.38  E-value=0.51  Score=45.73  Aligned_cols=108  Identities=15%  Similarity=0.295  Sum_probs=71.6

Q ss_pred             ccCCCCCCeEEEEecCChhHHHHH-HHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCC
Q 016441           18 IKHYSSNHQILLVGEGDFSFSLCL-ALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHP   96 (389)
Q Consensus        18 ~~~Yss~~rILLVGEGDFSFSlSL-a~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~   96 (389)
                      +....+.++||-||=|.-.++..+ |+..  +..|+|.-.+  +++.+   .|+++++.+.-..++++ .-||.++.   
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~--ga~V~gIDis--~~~l~---~Ar~~~~~~gl~~v~~v-~gDa~~l~---  185 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVY--GMRVNVVEIE--PDIAE---LSRKVIEGLGVDGVNVI-TGDETVID---  185 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTT--CCEEEEEESS--HHHHH---HHHHHHHHHTCCSEEEE-ESCGGGGG---
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHcc--CCEEEEEECC--HHHHH---HHHHHHHhcCCCCeEEE-ECchhhCC---
Confidence            445678999999999998888655 4433  4466665444  44444   26777766543234443 45777653   


Q ss_pred             CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441           97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                         ...||.|+...-      .++           ...+|+.+..+|+|||.+.+....+
T Consensus       186 ---d~~FDvV~~~a~------~~d-----------~~~~l~el~r~LkPGG~Lvv~~~~~  225 (298)
T 3fpf_A          186 ---GLEFDVLMVAAL------AEP-----------KRRVFRNIHRYVDTETRIIYRTYTG  225 (298)
T ss_dssp             ---GCCCSEEEECTT------CSC-----------HHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred             ---CCCcCEEEECCC------ccC-----------HHHHHHHHHHHcCCCcEEEEEcCcc
Confidence               478999987432      122           3478899999999999999876544

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=94.37  E-value=0.21  Score=46.90  Aligned_cols=133  Identities=11%  Similarity=0.083  Sum_probs=81.4

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF  103 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F  103 (389)
                      ..+||=||=|.=.++..|++.+. .  +..|.+|- .++.+   .++.++....-.+-.-...-|+.+...   .....|
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p-~--~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~  249 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHP-Q--LTGQIWDL-PTTRD---AARKTIHAHDLGGRVEFFEKNLLDARN---FEGGAA  249 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCT-T--CEEEEEEC-GGGHH---HHHHHHHHTTCGGGEEEEECCTTCGGG---GTTCCE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCC-C--CeEEEEEC-HHHHH---HHHHHHHhcCCCCceEEEeCCcccCcc---cCCCCc
Confidence            67999999999999999999874 2  44556676 33333   244444432211112233446555321   123459


Q ss_pred             ceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC------------------------CCCC
Q 016441          104 DRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT------------------------TVPF  159 (389)
Q Consensus       104 DrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~------------------------g~PY  159 (389)
                      |.|+.+.----.   .|         .-...+++.+..+|+|+|.+.|.-..                        +..+
T Consensus       250 D~v~~~~vlh~~---~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (352)
T 3mcz_A          250 DVVMLNDCLHYF---DA---------REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELH  317 (352)
T ss_dssp             EEEEEESCGGGS---CH---------HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCC
T ss_pred             cEEEEecccccC---CH---------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcC
Confidence            999987543221   11         12457888999999999999885321                        1122


Q ss_pred             CcccHHHHHhhCCcEEEEE
Q 016441          160 SNWNIKELAIGSSLSLIWC  178 (389)
Q Consensus       160 ~sWnIe~LAa~aGL~L~~~  178 (389)
                      +.=+++++.+++||.+++.
T Consensus       318 t~~e~~~ll~~aGf~~~~~  336 (352)
T 3mcz_A          318 PTPWIAGVVRDAGLAVGER  336 (352)
T ss_dssp             CHHHHHHHHHHTTCEEEEE
T ss_pred             CHHHHHHHHHHCCCceeee
Confidence            3334667888999998883

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=94.33  E-value=0.12  Score=47.82  Aligned_cols=109  Identities=17%  Similarity=0.250  Sum_probs=69.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCC-CCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGS-ASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs-~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      .++.+||=||=|.=.++++|++.++. +.+||  ..|-.+++.++   |+++++..... .++++ .-|+.++..     
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~--gvD~s~~ml~~---A~~~~~~~~~~~~v~~~-~~D~~~~~~-----  137 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKII--AIDNSPAMIER---CRRHIDAYKAPTPVDVI-EGDIRDIAI-----  137 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEE--EEESCHHHHHH---HHHHHHTSCCSSCEEEE-ESCTTTCCC-----
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEE--EEECCHHHHHH---HHHHHHhhccCceEEEe-ecccccccc-----
Confidence            45789999999999999999988742 33454  56744555443   66665543322 23444 347777542     


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                       ..||.|+.||=-- +  ..+         .-...+|+.+..+|+|||.+.|+-.
T Consensus       138 -~~~d~v~~~~~l~-~--~~~---------~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          138 -ENASMVVLNFTLQ-F--LEP---------SERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             -CSEEEEEEESCGG-G--SCH---------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -cccccceeeeeee-e--cCc---------hhHhHHHHHHHHHcCCCcEEEEEec
Confidence             4599999987311 1  011         1123567888899999999988744

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=94.30  E-value=0.16  Score=48.68  Aligned_cols=105  Identities=20%  Similarity=0.186  Sum_probs=70.5

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ..++.+||=||=|.=.++..|++. + ...++|.-.+  + +.+   .|+++++...- ..+++ ..-|+.++.    +.
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s--~-~~~---~a~~~~~~~~~~~~i~~-~~~d~~~~~----~~  128 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQS--E-ILY---QAMDIIRLNKLEDTITL-IKGKIEEVH----LP  128 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESS--T-HHH---HHHHHHHHTTCTTTEEE-EESCTTTSC----CS
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChH--H-HHH---HHHHHHHHcCCCCcEEE-EEeeHHHhc----CC
Confidence            356789999999998899999886 3 4578887765  2 332   25556544321 12333 455777653    34


Q ss_pred             CCCcceEEEcC-CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEE
Q 016441          100 TRKFDRIIFNF-PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVH  150 (389)
Q Consensus       100 ~~~FDrIIFNF-PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIH  150 (389)
                      ..+||.||.+. ++...            +...+..++..+..+|++||.+.
T Consensus       129 ~~~~D~Ivs~~~~~~l~------------~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          129 VEKVDVIISEWMGYFLL------------FESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CSCEEEEEECCCBTTBT------------TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCcEEEEEEcCchhhcc------------CHHHHHHHHHHHHhhcCCCcEEE
Confidence            46899999987 44432            22245678888999999999886

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=94.27  E-value=0.15  Score=48.88  Aligned_cols=120  Identities=21%  Similarity=0.216  Sum_probs=77.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ..+.+||=+|=|.=.||+. |+  + +..++|.-.+  .+..+   .++.|++...-.+-..++.-|+.++.       .
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s--~~ai~---~a~~n~~~n~l~~~v~~~~~D~~~~~-------~  257 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDIN--PHAIE---LLKKNIKLNKLEHKIIPILSDVREVD-------V  257 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEEESCGGGCC-------C
T ss_pred             CCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEEEECChHHhc-------C
Confidence            5778999999998888888 76  3 4566655443  32322   36677765432122334556777653       6


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIW  177 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~  177 (389)
                      .||.|+.|-|+.+.                  .|+..+..+|+++|.+++.-+...  ...-++.+.+.+++.+..
T Consensus       258 ~fD~Vi~dpP~~~~------------------~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~l~~~~~~~i~~  313 (336)
T 2yx1_A          258 KGNRVIMNLPKFAH------------------KFIDKALDIVEEGGVIHYYTIGKD--FDKAIKLFEKKCDCEVLE  313 (336)
T ss_dssp             CEEEEEECCTTTGG------------------GGHHHHHHHEEEEEEEEEEEEESS--SHHHHHHHHHHSEEEEEE
T ss_pred             CCcEEEECCcHhHH------------------HHHHHHHHHcCCCCEEEEEEeecC--chHHHHHHHHhcCCcEEE
Confidence            79999999997752                  678888999999999999877665  222233333333555443

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=94.23  E-value=0.31  Score=45.08  Aligned_cols=137  Identities=12%  Similarity=0.092  Sum_probs=80.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHH-----HHHHh-----CCCEEEeccccCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNL-----DNLKK-----LGTCILHGVDATT   91 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni-----~~Lr~-----~Gv~VlfgVDATk   91 (389)
                      .++.+||=||=|.=.++.+|++. + ...++|+-+-+.+.+.    .++.|+     +...-     ..+.|. ..|..+
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~----~a~~n~~~N~~~~~~~~~~~~~~v~~~-~~~~~~  150 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILN----SLESNIREHTANSCSSETVKRASPKVV-PYRWGD  150 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHH----HHHHHHHTTCC----------CCCEEE-ECCTTS
T ss_pred             cCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHH----HHHHHHHHhhhhhcccccCCCCCeEEE-EecCCC
Confidence            35679999999988899988875 3 3478888772233332    245555     22111     134443 122222


Q ss_pred             CCCCC--CcCCCCcceEEE-cCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhccc---C--CCeEEEEecCCCC---CC
Q 016441           92 MELHP--DLRTRKFDRIIF-NFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLR---D--GGEVHVSHKTTVP---FS  160 (389)
Q Consensus        92 L~~~~--~Lk~~~FDrIIF-NFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~---~--~GeIHVTLk~g~P---Y~  160 (389)
                      .....  .+...+||.||. +-+|.-    +           .+..+++.+..+|+   +  +|.+.|......|   ..
T Consensus       151 ~~~~~~~~~~~~~fD~Ii~~dvl~~~----~-----------~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~  215 (281)
T 3bzb_A          151 SPDSLQRCTGLQRFQVVLLADLLSFH----Q-----------AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAER  215 (281)
T ss_dssp             CTHHHHHHHSCSSBSEEEEESCCSCG----G-----------GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------
T ss_pred             ccHHHHhhccCCCCCEEEEeCcccCh----H-----------HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchh
Confidence            11100  002468999997 433321    1           14567788889999   9  9999887766544   23


Q ss_pred             cccHHHHHhhCC-cEEEEEee
Q 016441          161 NWNIKELAIGSS-LSLIWCSE  180 (389)
Q Consensus       161 sWnIe~LAa~aG-L~L~~~~~  180 (389)
                      .-.+.+++++.| |.+.....
T Consensus       216 ~~~~~~~l~~~G~f~v~~~~~  236 (281)
T 3bzb_A          216 DLAFFRLVNADGALIAEPWLS  236 (281)
T ss_dssp             CTHHHHHHHHSTTEEEEEEEC
T ss_pred             HHHHHHHHHhcCCEEEEEecc
Confidence            456777888999 99887644

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=94.22  E-value=0.14  Score=49.22  Aligned_cols=132  Identities=15%  Similarity=0.044  Sum_probs=84.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=+|=|.=.|+.++++.++...+|+|.-.|....-     -|         .++.++ .-|+....     ...
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~-----~a---------~~~~~~-~~D~~~~~-----~~~   97 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD-----LP---------PWAEGI-LADFLLWE-----PGE   97 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC-----CC---------TTEEEE-ESCGGGCC-----CSS
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHH-----hC---------CCCcEE-eCChhhcC-----ccC
Confidence            34669999999999999999988754568888877753211     01         234443 44665542     236


Q ss_pred             CcceEEEcCCCCCCCCCcc----chHHHHH-h----------HHHHHHHHHhhHhcccCCCeEEEEecCCCCC--CcccH
Q 016441          102 KFDRIIFNFPHAGFYGKED----NHLLIEM-H----------RSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF--SNWNI  164 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED----~~r~Ir~-n----------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY--~sWnI  164 (389)
                      +||.||.|=|-........    .....+. .          .++...|++.|..+|+++|.+.+.+.++--.  ..=.+
T Consensus        98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~l  177 (421)
T 2ih2_A           98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALL  177 (421)
T ss_dssp             CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHH
T ss_pred             CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHH
Confidence            7999999999887432100    0011111 1          1256689999999999999999888664100  11246


Q ss_pred             HHHHhhCCc
Q 016441          165 KELAIGSSL  173 (389)
Q Consensus       165 e~LAa~aGL  173 (389)
                      .+...+.++
T Consensus       178 r~~l~~~~~  186 (421)
T 2ih2_A          178 REFLAREGK  186 (421)
T ss_dssp             HHHHHHHSE
T ss_pred             HHHHHhcCC
Confidence            666666676

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=94.21  E-value=0.12  Score=44.87  Aligned_cols=140  Identities=16%  Similarity=0.175  Sum_probs=86.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhh-hhHHHHHHHHHhCCC--EEEeccccCCCCCCCCc
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKY-KRAKSNLDNLKKLGT--CILHGVDATTMELHPDL   98 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY-~~A~~Ni~~Lr~~Gv--~VlfgVDATkL~~~~~L   98 (389)
                      .+..+||=||=|.=.++..|++.+ .+..+++.-.+.  ++.+.. ..+.   +..++.|.  ......|+.++..    
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~--~~l~~~~~~a~---~~~~~~~~~~v~~~~~d~~~l~~----   95 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADK--SRMEKISAKAA---AKPAKGGLPNLLYLWATAERLPP----   95 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCG--GGGHHHHHHHT---SCGGGTCCTTEEEEECCSTTCCS----
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCH--HHHHHHHHHHH---HhhhhcCCCceEEEecchhhCCC----
Confidence            456789999999999999999875 345666654442  222211 0111   11222331  2334568887653    


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHH---HHHHHhhHhcccCCCeEEEEecCCC-----------CC--Ccc
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLV---RDFFRNSSGMLRDGGEVHVSHKTTV-----------PF--SNW  162 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL---~~FF~SA~~lL~~~GeIHVTLk~g~-----------PY--~sW  162 (389)
                      .... |.|...+|...            .++..+   ..+++.+..+|+|+|.+.++.....           |.  ..|
T Consensus        96 ~~~~-d~v~~~~~~~~------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (218)
T 3mq2_A           96 LSGV-GELHVLMPWGS------------LLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDS  162 (218)
T ss_dssp             CCCE-EEEEEESCCHH------------HHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHH
T ss_pred             CCCC-CEEEEEccchh------------hhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHH
Confidence            2344 88887777432            122233   6889999999999999999864321           10  111


Q ss_pred             ---cHHHHHhhCCcEEEEEeeCCCC
Q 016441          163 ---NIKELAIGSSLSLIWCSEFKIE  184 (389)
Q Consensus       163 ---nIe~LAa~aGL~L~~~~~F~~~  184 (389)
                         .+..+.+++|+.+.+...++.+
T Consensus       163 ~~~~l~~~l~~aGf~i~~~~~~~~~  187 (218)
T 3mq2_A          163 ADEWLAPRYAEAGWKLADCRYLEPE  187 (218)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEECHH
T ss_pred             HHHHHHHHHHHcCCCceeeeccchh
Confidence               2666888999999998777654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=94.20  E-value=0.044  Score=47.95  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=69.4

Q ss_pred             cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCC
Q 016441           19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPD   97 (389)
Q Consensus        19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~   97 (389)
                      ....+..+||=||=|.=.++..|++.++.+..|++.-.+..  ..+   .+++|++...- ..+.++. -|+...-....
T Consensus        65 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~--~~~---~a~~~~~~~g~~~~i~~~~-~d~~~~~~~~~  138 (229)
T 2avd_A           65 ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQ--PPE---LGRPLWRQAEAEHKIDLRL-KPALETLDELL  138 (229)
T ss_dssp             HHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSH--HHH---HHHHHHHHTTCTTTEEEEE-SCHHHHHHHHH
T ss_pred             HHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHH--HHH---HHHHHHHHCCCCCeEEEEE-cCHHHHHHHHH
Confidence            34567789999999999999999988754557777666542  222   24455543221 1234433 35543211000


Q ss_pred             cC--CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           98 LR--TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        98 Lk--~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      -.  ...||.|+.+.|...                 ...+|+.+..+|+++|.|.+.
T Consensus       139 ~~~~~~~~D~v~~d~~~~~-----------------~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          139 AAGEAGTFDVAVVDADKEN-----------------CSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             HTTCTTCEEEEEECSCSTT-----------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcCCCCCccEEEECCCHHH-----------------HHHHHHHHHHHcCCCeEEEEE
Confidence            01  167999999877221                 246889999999999998883

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=94.19  E-value=0.24  Score=43.56  Aligned_cols=107  Identities=18%  Similarity=0.208  Sum_probs=69.8

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCC-----CCcEEeccccCHHHHHHhhhhHHHHHHHHH-----hCCCEEEecccc
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGS-----ASNICASSLDSYDDVIQKYKRAKSNLDNLK-----KLGTCILHGVDA   89 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs-----~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-----~~Gv~VlfgVDA   89 (389)
                      ...+..+||-||=|.=.++..|++..+.     ...+++.-.+  +++.+   .+++|++.+.     ...+.+.. -|+
T Consensus        81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~~~~~v~~~~-~d~  154 (227)
T 1r18_A           81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQ--AELVR---RSKANLNTDDRSMLDSGQLLIVE-GDG  154 (227)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESC--HHHHH---HHHHHHHHHHHHHHHHTSEEEEE-SCG
T ss_pred             hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcC--HHHHH---HHHHHHHhcCccccCCCceEEEE-CCc
Confidence            3456789999999999999999987642     1356555443  34433   2556665543     44555543 466


Q ss_pred             CCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441           90 TTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus        90 TkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      .+.  .  .....||+|+.+.+-...                    ...+..+|+++|.+.++....
T Consensus       155 ~~~--~--~~~~~fD~I~~~~~~~~~--------------------~~~~~~~LkpgG~lvi~~~~~  197 (227)
T 1r18_A          155 RKG--Y--PPNAPYNAIHVGAAAPDT--------------------PTELINQLASGGRLIVPVGPD  197 (227)
T ss_dssp             GGC--C--GGGCSEEEEEECSCBSSC--------------------CHHHHHTEEEEEEEEEEESCS
T ss_pred             ccC--C--CcCCCccEEEECCchHHH--------------------HHHHHHHhcCCCEEEEEEecC
Confidence            651  1  123679999988764321                    256788999999999998753

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=94.09  E-value=0.047  Score=50.95  Aligned_cols=96  Identities=16%  Similarity=0.081  Sum_probs=65.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHH----HHHhCCCEEEeccccCCCCCCCCc
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLD----NLKKLGTCILHGVDATTMELHPDL   98 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~----~Lr~~Gv~VlfgVDATkL~~~~~L   98 (389)
                      ...+||.||=|+=.+++.++++ +  ..+++.-.|.  ++.+.   |++++.    .+....++++.+ ||.+.-     
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~--~~i~~---ar~~~~~~~~~~~~~rv~~~~~-D~~~~~-----  137 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADE--KILDS---FISFFPHFHEVKNNKNFTHAKQ-LLDLDI-----  137 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCH--HHHGG---GTTTSTTHHHHHTCTTEEEESS-GGGSCC-----
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCH--HHHHH---HHHHHHhhccccCCCeEEEEec-hHHHHH-----
Confidence            4578999999999999999887 4  5777776663  22221   222322    233345666543 776532     


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                        .+||.||.+.+.       .    .        +||+.+..+|+|+|.+.+..
T Consensus       138 --~~fD~Ii~d~~d-------p----~--------~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          138 --KKYDLIFCLQEP-------D----I--------HRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             --CCEEEEEESSCC-------C----H--------HHHHHHHTTEEEEEEEEEEE
T ss_pred             --hhCCEEEECCCC-------h----H--------HHHHHHHHhcCCCcEEEEEc
Confidence              679999998421       1    1        19999999999999988864

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=94.03  E-value=0.14  Score=49.64  Aligned_cols=114  Identities=16%  Similarity=0.215  Sum_probs=76.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      +-++||++|=||-+-++.++++. +...|+.--+|.. -++.++|= ..-|-..+..-.++|+.+ ||.+.-..   ..+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~l-p~~~~~~~~dpRv~v~~~-Dg~~~l~~---~~~  156 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYL-PNHNAGSYDDPRFKLVID-DGVNFVNQ---TSQ  156 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHC-HHHHTTGGGCTTEEEEES-CTTTTTSC---SSC
T ss_pred             CCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcC-ccccccccCCCcEEEEec-hHHHHHhh---ccc
Confidence            45689999999999999999865 3567888888843 24445551 112233355566777766 66654322   347


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      +||.||-+.+...+.+.          .-.-..||+.|+..|+++|-+.+-
T Consensus       157 ~yDvIi~D~~dp~~~~~----------~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          157 TFDVIISDCTDPIGPGE----------SLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             CEEEEEESCCCCCCTTC----------CSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             cCCEEEEeCCCcCCCch----------hhcCHHHHHHHHHHhCCCCEEEEe
Confidence            89999999987543221          112358999999999999977653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=94.02  E-value=0.23  Score=46.71  Aligned_cols=104  Identities=15%  Similarity=0.157  Sum_probs=68.3

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      -.++++||=||=|.=.++..|++..+....+++.-.+  +++.+   .++++++...-.++.+. .-|+.++..    ..
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~---~a~~~~~~~g~~~v~~~-~~d~~~~~~----~~  142 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS--RKICE---IAKRNVERLGIENVIFV-CGDGYYGVP----EF  142 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESC--HHHHH---HHHHHHHHTTCCSEEEE-ESCGGGCCG----GG
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCeEEE-ECChhhccc----cC
Confidence            3467899999999999999999876433457776655  22222   35666654332234443 447766321    23


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      ..||+|+.+.+--.. .                   +.+..+|+|+|.+.|+..
T Consensus       143 ~~fD~Iv~~~~~~~~-~-------------------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          143 SPYDVIFVTVGVDEV-P-------------------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             CCEEEEEECSBBSCC-C-------------------HHHHHHEEEEEEEEEEBC
T ss_pred             CCeEEEEEcCCHHHH-H-------------------HHHHHhcCCCcEEEEEEC
Confidence            679999999765442 0                   345678999999999853

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=93.98  E-value=0.22  Score=42.79  Aligned_cols=100  Identities=15%  Similarity=0.179  Sum_probs=64.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=||=|.=.++..|    + ...+++.-.+  +++.+.   ++.+.     .++.++. .|+.++.    +....
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s--~~~~~~---a~~~~-----~~~~~~~-~d~~~~~----~~~~~   95 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPS--EAMLAV---GRRRA-----PEATWVR-AWGEALP----FPGES   95 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCC--HHHHHH---HHHHC-----TTSEEEC-CCTTSCC----SCSSC
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCC--HHHHHH---HHHhC-----CCcEEEE-cccccCC----CCCCc
Confidence            6779999999888887777    2 2256655433  333321   33332     3556544 4777653    34578


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      ||.|+.++..--.   ++           ...+++.+..+|+++|.+.|+....
T Consensus        96 fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A           96 FDVVLLFTTLEFV---ED-----------VERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             EEEEEEESCTTTC---SC-----------HHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEEEEEcChhhhc---CC-----------HHHHHHHHHHHcCCCCEEEEEecCC
Confidence            9999998653221   11           3478889999999999999987654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=93.92  E-value=0.14  Score=46.47  Aligned_cols=103  Identities=17%  Similarity=0.161  Sum_probs=66.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~Lk~~  101 (389)
                      +..+||=||=|.=.++..|++.   +.++++.-.+  +.+.+   .++.++.   ..|.. -....|+.++..     ..
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s--~~~~~---~a~~~~~---~~~~~~~~~~~d~~~~~~-----~~  183 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHN--ENSIA---FLNETKE---KENLNISTALYDINAANI-----QE  183 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHHH---HTTCCEEEEECCGGGCCC-----CS
T ss_pred             CCCcEEEECCCCCHHHHHHHHC---CCeEEEEECC--HHHHH---HHHHHHH---HcCCceEEEEeccccccc-----cC
Confidence            6789999999999999999986   3466655443  33332   2444443   33432 233457766543     57


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      .||.|+.+.+-.-.            ....+..+++.+..+|+++|.+.|..
T Consensus       184 ~fD~i~~~~~~~~~------------~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          184 NYDFIVSTVVFMFL------------NRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             CEEEEEECSSGGGS------------CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CccEEEEccchhhC------------CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            89999998753321            11224578999999999999966543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=93.91  E-value=0.5  Score=40.91  Aligned_cols=110  Identities=14%  Similarity=0.041  Sum_probs=67.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-----hCCCEEEeccccCCCCCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-----KLGTCILHGVDATTMELHP   96 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-----~~Gv~VlfgVDATkL~~~~   96 (389)
                      .+..+||=||=|.=.++..|++..+ ..++++.-.+  +++.+   .+++++....     ...+.++. -|+..+.   
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~~~~~v~~~~-~d~~~~~---   97 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVS--YRSLE---IAQERLDRLRLPRNQWERLQLIQ-GALTYQD---   97 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESC--HHHHH---HHHHHHTTCCCCHHHHTTEEEEE-CCTTSCC---
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECC--HHHHH---HHHHHHHHhcCCcccCcceEEEe-CCccccc---
Confidence            3567999999999999999998643 3466666554  23322   2344432110     11344443 3664432   


Q ss_pred             CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441           97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                       .....||.|+.+..---.            ...-+..+++.+..+|+++|.+.++..
T Consensus        98 -~~~~~fD~v~~~~~l~~~------------~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A           98 -KRFHGYDAATVIEVIEHL------------DLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             -GGGCSCSEEEEESCGGGC------------CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             -ccCCCcCEEeeHHHHHcC------------CHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence             334789999987642211            122356789999999999997776654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=93.76  E-value=0.2  Score=53.35  Aligned_cols=148  Identities=16%  Similarity=0.049  Sum_probs=90.0

Q ss_pred             ccccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCC
Q 016441           14 EEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTM   92 (389)
Q Consensus        14 ~~K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL   92 (389)
                      ..+++..+.++.+||=+|=|.=.||+.+|+. | +..|+|  .|..+...+   .+++|++...-. .-.....-|+.+.
T Consensus       530 ~r~~l~~~~~g~~VLDlg~GtG~~sl~aa~~-g-a~~V~a--VD~s~~al~---~a~~N~~~ngl~~~~v~~i~~D~~~~  602 (703)
T 3v97_A          530 ARRMLGQMSKGKDFLNLFSYTGSATVHAGLG-G-ARSTTT--VDMSRTYLE---WAERNLRLNGLTGRAHRLIQADCLAW  602 (703)
T ss_dssp             HHHHHHHHCTTCEEEEESCTTCHHHHHHHHT-T-CSEEEE--EESCHHHHH---HHHHHHHHTTCCSTTEEEEESCHHHH
T ss_pred             HHHHHHHhcCCCcEEEeeechhHHHHHHHHC-C-CCEEEE--EeCCHHHHH---HHHHHHHHcCCCccceEEEecCHHHH
Confidence            4566777788999999999988899988873 2 344554  553333333   367776543211 1123445566652


Q ss_pred             CCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCC
Q 016441           93 ELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSS  172 (389)
Q Consensus        93 ~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aG  172 (389)
                      -.   ....+||.||.|-|..+. ++..  ..+.........++..|..+|+++|.+.++.+.....-  + .+.-.+.|
T Consensus       603 l~---~~~~~fD~Ii~DPP~f~~-~~~~--~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~--~-~~~l~~~g  673 (703)
T 3v97_A          603 LR---EANEQFDLIFIDPPTFSN-SKRM--EDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRM--D-LDGLAKLG  673 (703)
T ss_dssp             HH---HCCCCEEEEEECCCSBC----------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCC--C-HHHHHHTT
T ss_pred             HH---hcCCCccEEEECCccccC-Cccc--hhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc--C-HHHHHHcC
Confidence            11   123689999999998873 2211  00112345667788899999999999998877633211  1 34445677


Q ss_pred             cEEEE
Q 016441          173 LSLIW  177 (389)
Q Consensus       173 L~L~~  177 (389)
                      +.+..
T Consensus       674 ~~~~~  678 (703)
T 3v97_A          674 LKAQE  678 (703)
T ss_dssp             EEEEE
T ss_pred             Cceee
Confidence            76544

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=93.73  E-value=0.17  Score=45.55  Aligned_cols=102  Identities=10%  Similarity=0.121  Sum_probs=66.2

Q ss_pred             CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCEEEeccccCCCCCCCCcCCCC
Q 016441           25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL--GTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~--Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      .+||=||=|.=..++.||+.++.+..|++.-.+  ++..+   .|++|++...-.  .++++ .-||.++-.  .+....
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~g~~~~~i~~~-~gda~~~l~--~~~~~~  129 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPE--SEHQR---QAKALFREAGYSPSRVRFL-LSRPLDVMS--RLANDS  129 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSC--HHHHH---HHHHHHHHTTCCGGGEEEE-CSCHHHHGG--GSCTTC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCcCcEEEE-EcCHHHHHH--HhcCCC
Confidence            399999999999999999987545566655444  33332   366666553321  23333 335554321  122468


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV  151 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV  151 (389)
                      ||.|+.+.+..      +           ...||+.+..+|+|||.|.+
T Consensus       130 fD~V~~d~~~~------~-----------~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          130 YQLVFGQVSPM------D-----------LKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             EEEEEECCCTT------T-----------HHHHHHHHHHHEEEEEEEEE
T ss_pred             cCeEEEcCcHH------H-----------HHHHHHHHHHHcCCCcEEEE
Confidence            99999874321      1           23589999999999999887

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=93.70  E-value=0.43  Score=45.67  Aligned_cols=106  Identities=11%  Similarity=0.134  Sum_probs=68.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EE-EeccccCCCCCCCCc
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT--CI-LHGVDATTMELHPDL   98 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv--~V-lfgVDATkL~~~~~L   98 (389)
                      ....+||=||=|.=.++..|++.+.   ++-.|.+|. .++.+   .+++++   ++.|.  .| ...-|+.+...  .+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~---~a~~~~---~~~~~~~~v~~~~~d~~~~~~--~~  245 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK---EVEVTIVDL-PQQLE---MMRKQT---AGLSGSERIHGHGANLLDRDV--PF  245 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST---TCEEEEEEC-HHHHH---HHHHHH---TTCTTGGGEEEEECCCCSSSC--CC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC---CCEEEEEeC-HHHHH---HHHHHH---HhcCcccceEEEEccccccCC--CC
Confidence            4567999999999999999999863   345677777 44443   244444   33442  22 33446655320  12


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      . ..||.|+.++----.   .|         +-...+++.+...|+|+|.|.|.
T Consensus       246 p-~~~D~v~~~~vlh~~---~~---------~~~~~~l~~~~~~L~pgG~l~i~  286 (363)
T 3dp7_A          246 P-TGFDAVWMSQFLDCF---SE---------EEVISILTRVAQSIGKDSKVYIM  286 (363)
T ss_dssp             C-CCCSEEEEESCSTTS---CH---------HHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             C-CCcCEEEEechhhhC---CH---------HHHHHHHHHHHHhcCCCcEEEEE
Confidence            2 579999987643221   11         12447788899999999999875

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=93.70  E-value=0.18  Score=43.73  Aligned_cols=105  Identities=14%  Similarity=0.131  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~Lk   99 (389)
                      .....+||=||=|.=.++..|++.++.+..|++.-.+  ++..+   .+++|++...-.. ++++ .-|+.++-.  .+.
T Consensus        54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~v~~~-~~d~~~~~~--~~~  125 (210)
T 3c3p_A           54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPD--RDNVE---HARRMLHDNGLIDRVELQ-VGDPLGIAA--GQR  125 (210)
T ss_dssp             HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESC--HHHHH---HHHHHHHHHSGGGGEEEE-ESCHHHHHT--TCC
T ss_pred             hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHCCCCceEEEE-EecHHHHhc--cCC
Confidence            3467799999999999999999887534566665444  33332   3566665443212 3333 346654311  122


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                       . ||.|+.+.+..      +           ...+|+.+..+|+++|.+.+.
T Consensus       126 -~-fD~v~~~~~~~------~-----------~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          126 -D-IDILFMDCDVF------N-----------GADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             -S-EEEEEEETTTS------C-----------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             -C-CCEEEEcCChh------h-----------hHHHHHHHHHhcCCCeEEEEE
Confidence             4 99999985421      1           347889999999999998873

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=93.70  E-value=0.53  Score=43.53  Aligned_cols=118  Identities=14%  Similarity=0.134  Sum_probs=72.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-----CC-CEEEeccccCCCCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-----LG-TCILHGVDATTMELH   95 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-----~G-v~VlfgVDATkL~~~   95 (389)
                      .+..+||=||=|.=.++..|++.  ....++++-.+  +++.+   .++.+......     .. -.-....|+..+...
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s--~~~l~---~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  105 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIA--DVSVK---QCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI  105 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESC--HHHHH---HHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCST
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCC--HHHHH---HHHHHHHHhhhcccccccceEEEEEecccccchh
Confidence            35679999999988888888874  24567776444  23332   24445544421     11 122345577776422


Q ss_pred             CCcC--CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441           96 PDLR--TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus        96 ~~Lk--~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      ..+.  ...||.|+.++----   .       -.+..-+..+|+.+..+|+|+|.+.++..+.
T Consensus       106 ~~~~~~~~~fD~V~~~~~l~~---~-------~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          106 DKFRDPQMCFDICSCQFVCHY---S-------FESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             TTCSSTTCCEEEEEEETCGGG---G-------GGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             hhcccCCCCEEEEEEecchhh---c-------cCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            2232  358999999873211   0       0122335689999999999999999987654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=93.70  E-value=0.39  Score=45.48  Aligned_cols=132  Identities=16%  Similarity=0.113  Sum_probs=81.9

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ++...+||=||=|.=.++..|++.+.   ++.+|.+|-.+.+.++      +++.....+-.-...-|+..  .   +. 
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~~~~~~~~------~~~~~~~~~~v~~~~~d~~~--~---~p-  246 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHP---GLQGVLLDRAEVVARH------RLDAPDVAGRWKVVEGDFLR--E---VP-  246 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCT---TEEEEEEECHHHHTTC------CCCCGGGTTSEEEEECCTTT--C---CC-
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCC---CCEEEEecCHHHhhcc------cccccCCCCCeEEEecCCCC--C---CC-
Confidence            45677999999999999999999873   4666778864433210      11100111112223445541  1   11 


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC--C--C------------------C
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT--T--V------------------P  158 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~--g--~------------------P  158 (389)
                       .||.|+.+.----.   .|         .-...+++.+..+|+|||.+.|.-..  .  .                  .
T Consensus       247 -~~D~v~~~~vlh~~---~d---------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~  313 (348)
T 3lst_A          247 -HADVHVLKRILHNW---GD---------EDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQE  313 (348)
T ss_dssp             -CCSEEEEESCGGGS---CH---------HHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCC
T ss_pred             -CCcEEEEehhccCC---CH---------HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcC
Confidence             79999987643222   11         11347889999999999999885321  1  1                  1


Q ss_pred             CCcccHHHHHhhCCcEEEEEee
Q 016441          159 FSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       159 Y~sWnIe~LAa~aGL~L~~~~~  180 (389)
                      ++.=++.++.+++||..++..+
T Consensus       314 ~t~~e~~~ll~~aGf~~~~~~~  335 (348)
T 3lst_A          314 RTAAELEPLFTAAGLRLDRVVG  335 (348)
T ss_dssp             CBHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCceEEEEE
Confidence            2233466788999999998876

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=93.63  E-value=0.067  Score=47.69  Aligned_cols=110  Identities=16%  Similarity=0.199  Sum_probs=68.4

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCC-CCC---
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTM-ELH---   95 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL-~~~---   95 (389)
                      ..+..+||-||=|.=.++..|++.++.+..+++.-.+  +++.+   .++++++...-.+ +.+. .-|+.+. ...   
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~g~~~~v~~~-~~d~~~~~~~~~~~  131 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVS--EEWTN---VARKYWKENGLENKIFLK-LGSALETLQVLIDS  131 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESC--HHHHH---HHHHHHHHTTCGGGEEEE-ESCHHHHHHHHHHC
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCCEEEE-ECCHHHHHHHHHhh
Confidence            3467899999999999999999987545577766554  33322   2455554322111 3333 3355431 100   


Q ss_pred             -------CCcCC--CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441           96 -------PDLRT--RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus        96 -------~~Lk~--~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                             ..+..  ..||.|+.++.      .++           +..+|+.+..+|+++|.+.+.-
T Consensus       132 ~~~~~~~~~f~~~~~~fD~I~~~~~------~~~-----------~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          132 KSAPSWASDFAFGPSSIDLFFLDAD------KEN-----------YPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             SSCCGGGTTTCCSTTCEEEEEECSC------GGG-----------HHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cccccccccccCCCCCcCEEEEeCC------HHH-----------HHHHHHHHHHHcCCCeEEEEEc
Confidence                   01112  67999999842      111           2378999999999999999864

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=93.60  E-value=0.45  Score=41.76  Aligned_cols=115  Identities=11%  Similarity=0.095  Sum_probs=71.8

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCC-CCCC-
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTM-ELHP-   96 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL-~~~~-   96 (389)
                      ...+..+||=||=|.=.++..||+.++.+..|+|.-.+  +++.+   .|++|++...-.+ ++++ .-|+.+. .... 
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~v~~~-~~d~~~~l~~~~~  128 (221)
T 3u81_A           55 REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEIN--PDCAA---ITQQMLNFAGLQDKVTIL-NGASQDLIPQLKK  128 (221)
T ss_dssp             HHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESC--HHHHH---HHHHHHHHHTCGGGEEEE-ESCHHHHGGGTTT
T ss_pred             HhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCC--hHHHH---HHHHHHHHcCCCCceEEE-ECCHHHHHHHHHH
Confidence            34467899999999999999999877545566665544  33333   3667776654222 4443 4466442 2110 


Q ss_pred             CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441           97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      ......||.|+.+.++...              .-...++..+ .+|+|+|.|.+.-..
T Consensus       129 ~~~~~~fD~V~~d~~~~~~--------------~~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          129 KYDVDTLDMVFLDHWKDRY--------------LPDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             TSCCCCCSEEEECSCGGGH--------------HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             hcCCCceEEEEEcCCcccc--------------hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence            1122689999998644321              1123577778 999999998876444

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=93.49  E-value=0.21  Score=47.39  Aligned_cols=105  Identities=19%  Similarity=0.172  Sum_probs=69.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~Lk~  100 (389)
                      .++.+||=||=|.=.++..+++. + ...++|.-.+  + +.+   .|+++++...-.+ +++ ..-|+.++.    +..
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s--~-~~~---~a~~~~~~~~~~~~i~~-~~~d~~~~~----~~~  103 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS--S-IIE---MAKELVELNGFSDKITL-LRGKLEDVH----LPF  103 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS--T-HHH---HHHHHHHHTTCTTTEEE-EESCTTTSC----CSS
T ss_pred             cCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH--H-HHH---HHHHHHHHcCCCCCEEE-EECchhhcc----CCC
Confidence            45779999999998899988876 3 4578887765  2 222   2555554322112 343 445776653    334


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVH  150 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIH  150 (389)
                      .+||.||.+.+..+....           ..+..++..+..+|+|+|.+.
T Consensus       104 ~~~D~Ivs~~~~~~l~~~-----------~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          104 PKVDIIISEWMGYFLLYE-----------SMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SCEEEEEECCCBTTBSTT-----------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             CcccEEEEeCchhhcccH-----------HHHHHHHHHHHhhcCCCeEEE
Confidence            689999999774332111           224577888899999999886

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=93.42  E-value=0.14  Score=45.97  Aligned_cols=101  Identities=13%  Similarity=0.151  Sum_probs=66.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=||=|.=.++..|++.   +.++++.-.+  +++.+.   ++.+..     +  +....|+.++.    +....
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s--~~~l~~---a~~~~~-----~--~~~~~d~~~~~----~~~~~  114 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPS--KEMLEV---AREKGV-----K--NVVEAKAEDLP----FPSGA  114 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESC--HHHHHH---HHHHTC-----S--CEEECCTTSCC----SCTTC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCC--HHHHHH---HHhhcC-----C--CEEECcHHHCC----CCCCC
Confidence            6779999999999999999875   2456665433  333321   222221     2  25566887764    34578


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      ||.|+.+++-...  .+        +   ...+++.+..+|+++|.+.++..+
T Consensus       115 fD~v~~~~~~~~~--~~--------~---~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          115 FEAVLALGDVLSY--VE--------N---KDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             EEEEEECSSHHHH--CS--------C---HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EEEEEEcchhhhc--cc--------c---HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            9999986532110  00        1   567889999999999999998754

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=93.41  E-value=0.9  Score=40.82  Aligned_cols=125  Identities=16%  Similarity=0.137  Sum_probs=79.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      .+..+||=||=|.=.++..|++.   +..++++-.+.  .+.+          ..++. ++.+ ..-|++++.    +..
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~--~~~~----------~a~~~~~~~~-~~~d~~~~~----~~~   92 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQ---GLFVYAVEPSI--VMRQ----------QAVVHPQVEW-FTGYAENLA----LPD   92 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTT---TCEEEEECSCH--HHHH----------SSCCCTTEEE-ECCCTTSCC----SCT
T ss_pred             CCCCEEEEEcCcccHHHHHHHhC---CCEEEEEeCCH--HHHH----------HHHhccCCEE-EECchhhCC----CCC
Confidence            56789999999999999999872   35676665442  2222          11111 3333 345676643    345


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-CCcc-----------------
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-FSNW-----------------  162 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sW-----------------  162 (389)
                      ..||.|+.++.---.   +|           ...+++.+..+|+ ||.+.+.-..... ...|                 
T Consensus        93 ~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
T 3ege_A           93 KSVDGVISILAIHHF---SH-----------LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLP  157 (261)
T ss_dssp             TCBSEEEEESCGGGC---SS-----------HHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCC
T ss_pred             CCEeEEEEcchHhhc---cC-----------HHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCC
Confidence            789999998753221   22           3478899999999 9977666554211 1222                 


Q ss_pred             ---cHHHHHhhCCcEEEEEeeCC
Q 016441          163 ---NIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       163 ---nIe~LAa~aGL~L~~~~~F~  182 (389)
                         .+. +.+++||..++...+.
T Consensus       158 ~~~~~~-~l~~aGF~~v~~~~~~  179 (261)
T 3ege_A          158 LDEQIN-LLQENTKRRVEAIPFL  179 (261)
T ss_dssp             HHHHHH-HHHHHHCSEEEEEECC
T ss_pred             CHHHHH-HHHHcCCCceeEEEec
Confidence               244 7888899887776664

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=93.40  E-value=0.24  Score=43.70  Aligned_cols=107  Identities=14%  Similarity=0.120  Sum_probs=68.3

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      ...+..+||=||=|.=.++..|++.   +.+++++-.+  .++.+   .+..++ .-...++.+ ...|+.++.    +.
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s--~~~~~---~a~~~~-~~~~~~~~~-~~~d~~~~~----~~  101 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDAD--AAMLE---VFRQKI-AGVDRKVQV-VQADARAIP----LP  101 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESC--HHHHH---HHHHHT-TTSCTTEEE-EESCTTSCC----SC
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECC--HHHHH---HHHHHh-hccCCceEE-EEcccccCC----CC
Confidence            4567789999999998999999875   2466665443  33332   133343 000122333 345776653    34


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      ...||.|+.++.---.   .|           ...+++.+..+|++||.+.++..
T Consensus       102 ~~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~  142 (263)
T 2yqz_A          102 DESVHGVIVVHLWHLV---PD-----------WPKVLAEAIRVLKPGGALLEGWD  142 (263)
T ss_dssp             TTCEEEEEEESCGGGC---TT-----------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCeeEEEECCchhhc---CC-----------HHHHHHHHHHHCCCCcEEEEEec
Confidence            5789999998653221   11           24688889999999999999843

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=93.35  E-value=0.14  Score=49.81  Aligned_cols=110  Identities=20%  Similarity=0.173  Sum_probs=72.1

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      +..++.+||=||=|.=.++..|+++ | ...|+|.-..  +.+ +   .++.+++...-.+...+..-|+.++..    .
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s--~~~-~---~a~~~~~~~~~~~~v~~~~~d~~~~~~----~  127 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT--KMA-D---HARALVKANNLDHIVEVIEGSVEDISL----P  127 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS--TTH-H---HHHHHHHHTTCTTTEEEEESCGGGCCC----S
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH--HHH-H---HHHHHHHHcCCCCeEEEEECchhhcCc----C
Confidence            4456789999999999999999886 3 3478887665  222 2   244454433222223445567777642    2


Q ss_pred             CCCcceEEEcC-CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          100 TRKFDRIIFNF-PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       100 ~~~FDrIIFNF-PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                       .+||.||.|. +|... . +          ..+..+++.+..+|+|+|.+.++..
T Consensus       128 -~~~D~Iv~~~~~~~l~-~-e----------~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C          128 -EKVDVIISEWMGYFLL-R-E----------SMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             -SCEEEEEECCCBTTBT-T-T----------CTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             -CcceEEEEcChhhccc-c-h----------HHHHHHHHHHHhhCCCCeEEEEecC
Confidence             7899999987 44432 1 1          1256788888899999998865544

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=93.32  E-value=0.17  Score=45.11  Aligned_cols=104  Identities=20%  Similarity=0.164  Sum_probs=67.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      .+..+||=||=|.=.++..||+... ...|++.-.+  ++..+   .|+.|++...-. .+.+ ..-|+.+.-.. .+ .
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~v~~-~~~d~~~~~~~-~~-~  140 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERN--ETMIQ---YAKQNLATYHFENQVRI-IEGNALEQFEN-VN-D  140 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECC--HHHHH---HHHHHHHHTTCTTTEEE-EESCGGGCHHH-HT-T
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEE-EECCHHHHHHh-hc-c
Confidence            4678999999999999999998542 4566655444  33332   255665543321 2343 34466553110 11 4


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV  151 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV  151 (389)
                      ..||.|+.+.+...                 +..||+.+..+|+++|.|.+
T Consensus       141 ~~fD~V~~~~~~~~-----------------~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          141 KVYDMIFIDAAKAQ-----------------SKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             SCEEEEEEETTSSS-----------------HHHHHHHHGGGEEEEEEEEE
T ss_pred             CCccEEEEcCcHHH-----------------HHHHHHHHHHhcCCCeEEEE
Confidence            67999998854221                 34699999999999999977

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=93.15  E-value=0.39  Score=40.80  Aligned_cols=125  Identities=10%  Similarity=0.024  Sum_probs=75.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=||=|.=.++..|++..    +++|.-.+  +++.+.            ..++.++ .-|+.+     .+....
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s--~~~~~~------------~~~~~~~-~~d~~~-----~~~~~~   78 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN----TVVSTDLN--IRALES------------HRGGNLV-RADLLC-----SINQES   78 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS----EEEEEESC--HHHHHT------------CSSSCEE-ECSTTT-----TBCGGG
T ss_pred             CCCeEEEeccCccHHHHHHHhcC----cEEEEECC--HHHHhc------------ccCCeEE-ECChhh-----hcccCC
Confidence            45699999999999999998753    56555443  333332            2345543 335544     123378


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      ||.|+.|.|..-....+. ...-.....++..+++.+     ++|.+.+.....  ...-.+.++.+++|+......
T Consensus        79 fD~i~~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l-----pgG~l~~~~~~~--~~~~~l~~~l~~~gf~~~~~~  147 (170)
T 3q87_B           79 VDVVVFNPPYVPDTDDPI-IGGGYLGREVIDRFVDAV-----TVGMLYLLVIEA--NRPKEVLARLEERGYGTRILK  147 (170)
T ss_dssp             CSEEEECCCCBTTCCCTT-TBCCGGGCHHHHHHHHHC-----CSSEEEEEEEGG--GCHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEECCCCccCCcccc-ccCCcchHHHHHHHHhhC-----CCCEEEEEEecC--CCHHHHHHHHHHCCCcEEEEE
Confidence            999999999663211000 000001234555555544     999998876432  234567778889999877643

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=92.93  E-value=2.3  Score=37.82  Aligned_cols=150  Identities=15%  Similarity=0.049  Sum_probs=80.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCC-CCCCCCcC-
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATT-MELHPDLR-   99 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATk-L~~~~~Lk-   99 (389)
                      +..+||=+|=|.=.++..|++... +..++|.-.+  +++.+   .|+.|++...-.+ +.++ .-|+.+ +.....-. 
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~  137 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVD--DMCFN---YAKKNVEQNNLSDLIKVV-KVPQKTLLMDALKEES  137 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEE-ECCTTCSSTTTSTTCC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECC--HHHHH---HHHHHHHHcCCCccEEEE-Ecchhhhhhhhhhccc
Confidence            467899999998888888887652 3456665444  33333   3666765432222 4444 447766 22221111 


Q ss_pred             CCCcceEEEcCCCCCCCCC-cc-chHHHHH---h----------------HHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441          100 TRKFDRIIFNFPHAGFYGK-ED-NHLLIEM---H----------------RSLVRDFFRNSSGMLRDGGEVHVSHKTTVP  158 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gk-ED-~~r~Ir~---n----------------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  158 (389)
                      ...||.|+.|-|....... .. ..+.++.   .                -.++..++..+..+|+++|.++..+-..  
T Consensus       138 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~--  215 (254)
T 2h00_A          138 EIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKK--  215 (254)
T ss_dssp             SCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESST--
T ss_pred             CCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCCh--
Confidence            2579999999887653100 00 0000100   0                1123334445566777778776544221  


Q ss_pred             CCcccHHHHHhhCCcEEEEEeeC
Q 016441          159 FSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       159 Y~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      ...=.+.++.+++|+.-++...+
T Consensus       216 ~~~~~~~~~l~~~Gf~~v~~~~~  238 (254)
T 2h00_A          216 CSLAPLKEELRIQGVPKVTYTEF  238 (254)
T ss_dssp             TSHHHHHHHHHHTTCSEEEEEEE
T ss_pred             hHHHHHHHHHHHcCCCceEEEEE
Confidence            12124667888999977665544

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=92.93  E-value=0.56  Score=40.28  Aligned_cols=102  Identities=18%  Similarity=0.177  Sum_probs=66.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++.   +.++++.-.+  +++.+   .+++|++.+.-.++.+ ..-|+.+..    ....
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~v~~-~~~d~~~~~----~~~~  142 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERI--KGLQW---QARRRLKNLDLHNVST-RHGDGWQGW----QARA  142 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESC--HHHHH---HHHHHHHHTTCCSEEE-EESCGGGCC----GGGC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecC--HHHHH---HHHHHHHHcCCCceEE-EECCcccCC----ccCC
Confidence            56789999999999999999987   3567776554  33333   2556655433223333 334665532    1347


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      .||.|+.+.+....   .                 ..+..+|+++|.+.+++.++
T Consensus       143 ~~D~i~~~~~~~~~---~-----------------~~~~~~L~pgG~lv~~~~~~  177 (210)
T 3lbf_A          143 PFDAIIVTAAPPEI---P-----------------TALMTQLDEGGILVLPVGEE  177 (210)
T ss_dssp             CEEEEEESSBCSSC---C-----------------THHHHTEEEEEEEEEEECSS
T ss_pred             CccEEEEccchhhh---h-----------------HHHHHhcccCcEEEEEEcCC
Confidence            89999997433221   0                 03678999999999999873

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=92.89  E-value=0.81  Score=40.27  Aligned_cols=103  Identities=20%  Similarity=0.140  Sum_probs=69.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++.+. +..++++-.+  .++.+.   +..+     ..++.+. ..|+.++.     ...
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s--~~~~~~---a~~~-----~~~~~~~-~~d~~~~~-----~~~   94 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSD--DDMLEK---AADR-----LPNTNFG-KADLATWK-----PAQ   94 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESC--HHHHHH---HHHH-----STTSEEE-ECCTTTCC-----CSS
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECC--HHHHHH---HHHh-----CCCcEEE-ECChhhcC-----ccC
Confidence            4567999999999999999998873 4577776554  222221   2222     1245444 45777654     246


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      .||.|+.++.---.   +|           ...+++.+..+|+++|.+.++...
T Consensus        95 ~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A           95 KADLLYANAVFQWV---PD-----------HLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             CEEEEEEESCGGGS---TT-----------HHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             CcCEEEEeCchhhC---CC-----------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence            79999998753321   11           346888999999999999998754

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=92.82  E-value=0.48  Score=45.36  Aligned_cols=106  Identities=19%  Similarity=0.128  Sum_probs=68.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      .++.+||=||-|.=.++..+++. + ...++|.-.+.  .+ +   .++.+++...- ..+++ ..-|+.++.    +. 
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~--~~-~---~a~~~~~~~~l~~~v~~-~~~d~~~~~----~~-  114 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST--MA-Q---HAEVLVKSNNLTDRIVV-IPGKVEEVS----LP-  114 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST--HH-H---HHHHHHHHTTCTTTEEE-EESCTTTCC----CS-
T ss_pred             CCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH--HH-H---HHHHHHHHcCCCCcEEE-EEcchhhCC----CC-
Confidence            36779999999999999999885 3 45788877652  22 2   24555543221 12444 445776653    22 


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      .+||.||.+.+.... ..++           +..+|..+..+|+++|.+.++.
T Consensus       115 ~~~D~Ivs~~~~~~~-~~~~-----------~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          115 EQVDIIISEPMGYML-FNER-----------MLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             SCEEEEEECCCBTTB-TTTS-----------HHHHHHHGGGGEEEEEEEESCE
T ss_pred             CceeEEEEeCchhcC-ChHH-----------HHHHHHHHHhhcCCCeEEEEec
Confidence            579999999763221 1111           3456678899999999987654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=92.71  E-value=0.21  Score=46.27  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=28.5

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEecccc
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLD   57 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD   57 (389)
                      ...+||=||=|.=.++..|++.++ +..|+++-.+
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis   79 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDID   79 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESC
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCC
Confidence            467999999999999999999885 4578877666

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=92.71  E-value=0.35  Score=43.28  Aligned_cols=120  Identities=18%  Similarity=0.162  Sum_probs=68.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHH-------------------------
Q 016441           23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNL-------------------------   76 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-------------------------   76 (389)
                      ...+||=+|=|.=.|+..|++.. ....+|+|+-.+.. .+ +   .|+.|+...                         
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~-~l-~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPA-PL-E---LAAKNLALLSPAGLTARELERREQSERFGKPSYL  125 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHH-HH-H---HHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHH-HH-H---HHHHHHHHhhhccccccchhhhhhhhhcccccch
Confidence            45689999888888999998762 12356777765532 22 1   122222211                         


Q ss_pred             ---------H----hCC---CEEEeccccCCCCCCCCc-CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhh
Q 016441           77 ---------K----KLG---TCILHGVDATTMELHPDL-RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNS  139 (389)
Q Consensus        77 ---------r----~~G---v~VlfgVDATkL~~~~~L-k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA  139 (389)
                               +    ..|   ...+..-|+.+......+ ...+||.|+.|.|.......+.     ....+....|++.+
T Consensus       126 ~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~-----~~~~~~~~~~l~~~  200 (250)
T 1o9g_A          126 EAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG-----QVPGQPVAGLLRSL  200 (250)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS-----CCCHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccc-----cccccHHHHHHHHH
Confidence                     0    111   011334455442100000 2347999999998775421110     01235677899999


Q ss_pred             HhcccCCCeEEEE
Q 016441          140 SGMLRDGGEVHVS  152 (389)
Q Consensus       140 ~~lL~~~GeIHVT  152 (389)
                      ..+|+++|.+.++
T Consensus       201 ~~~LkpgG~l~~~  213 (250)
T 1o9g_A          201 ASALPAHAVIAVT  213 (250)
T ss_dssp             HHHSCTTCEEEEE
T ss_pred             HHhcCCCcEEEEe
Confidence            9999999999984

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=92.66  E-value=0.43  Score=40.04  Aligned_cols=112  Identities=12%  Similarity=0.119  Sum_probs=66.1

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..++++||.||.|.                   ...|..+++.+.   |+++..    ..+.+ ...|++++... .+..
T Consensus        10 ~~~g~~vL~~~~g~-------------------v~vD~s~~ml~~---a~~~~~----~~~~~-~~~d~~~~~~~-~~~~   61 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-------------------SPVEALKGLVDK---LQALTG----NEGRV-SVENIKQLLQS-AHKE   61 (176)
T ss_dssp             CCTTSEEEEEECTT-------------------SCHHHHHHHHHH---HHHHTT----TTSEE-EEEEGGGGGGG-CCCS
T ss_pred             CCCCCEEEEecCCc-------------------eeeeCCHHHHHH---HHHhcc----cCcEE-EEechhcCccc-cCCC
Confidence            45689999999985                   125543333332   322221    12444 34577776421 1245


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC----CCCcc---cHHHHHhhCCc
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV----PFSNW---NIKELAIGSSL  173 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----PY~sW---nIe~LAa~aGL  173 (389)
                      ..||.|+.++--.-.  .++           ...+|+.+..+|+|||.+.+......    ++..+   .+.++.+++||
T Consensus        62 ~~fD~V~~~~~l~~~--~~~-----------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           62 SSFDIILSGLVPGST--TLH-----------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             SCEEEEEECCSTTCC--CCC-----------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             CCEeEEEECChhhhc--ccC-----------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            789999987532211  022           14788999999999999999654221    22222   35567788999

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=92.66  E-value=0.23  Score=43.57  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=78.9

Q ss_pred             cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC-
Q 016441           19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD-   97 (389)
Q Consensus        19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~-   97 (389)
                      ....++.+||=+|=|.=.+|..|++.   +..|+|.-+....      +          ..++.++ ..|+++...... 
T Consensus        21 ~~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~------~----------~~~v~~~-~~D~~~~~~~~~~   80 (191)
T 3dou_A           21 RVVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME------E----------IAGVRFI-RCDIFKETIFDDI   80 (191)
T ss_dssp             CCSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC------C----------CTTCEEE-ECCTTSSSHHHHH
T ss_pred             CCCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc------c----------CCCeEEE-EccccCHHHHHHH
Confidence            34567899999999999999999886   4578887776431      0          1356554 457776432111 


Q ss_pred             ---cC---CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441           98 ---LR---TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus        98 ---Lk---~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                         +.   ..+||.|+-|-|-... |...  ........|+...+..|..+|+|||.+.+.+..++
T Consensus        81 ~~~~~~~~~~~~D~Vlsd~~~~~~-g~~~--~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~  143 (191)
T 3dou_A           81 DRALREEGIEKVDDVVSDAMAKVS-GIPS--RDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD  143 (191)
T ss_dssp             HHHHHHHTCSSEEEEEECCCCCCC-SCHH--HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             HHHhhcccCCcceEEecCCCcCCC-CCcc--cCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence               11   1389999999754332 3221  11223456778889999999999999999998886

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=92.63  E-value=0.48  Score=41.99  Aligned_cols=105  Identities=15%  Similarity=0.106  Sum_probs=66.3

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+..+||-||=|.=.++..|++..+  ..+++.-.+  +++.+   .+++|++.+.-.++.+ ...|+. .. .  ...
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~--~~~~~---~a~~~~~~~~~~~v~~-~~~d~~-~~-~--~~~  156 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERI--PELVE---FAKRNLERAGVKNVHV-ILGDGS-KG-F--PPK  156 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESC--HHHHH---HHHHHHHHTTCCSEEE-EESCGG-GC-C--GGG
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCC--HHHHH---HHHHHHHHcCCCCcEE-EECCcc-cC-C--CCC
Confidence            35677999999999999999999875  567665444  23332   2555655433223333 334551 11 1  123


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                      ..||.||.+.+-...                    ...+..+|+++|.+.++.-+..
T Consensus       157 ~~fD~Ii~~~~~~~~--------------------~~~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          157 APYDVIIVTAGAPKI--------------------PEPLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             CCEEEEEECSBBSSC--------------------CHHHHHTEEEEEEEEEEECSSS
T ss_pred             CCccEEEECCcHHHH--------------------HHHHHHhcCCCcEEEEEEecCC
Confidence            469999998764332                    0146778999999999987653

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=92.56  E-value=0.29  Score=44.29  Aligned_cols=103  Identities=14%  Similarity=0.136  Sum_probs=68.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHH---hCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           23 SNHQILLVGEGDFSFSLCLALA---FGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~---~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      +..+||=||=|.=..+..||+.   .+.+..|+|.-.+..-  .+   .|+    .+ ..+++++.+ |+.++..-..+.
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~--l~---~a~----~~-~~~v~~~~g-D~~~~~~l~~~~  149 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR--CQ---IPA----SD-MENITLHQG-DCSDLTTFEHLR  149 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTT--CC---CCG----GG-CTTEEEEEC-CSSCSGGGGGGS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHH--HH---HHh----cc-CCceEEEEC-cchhHHHHHhhc
Confidence            4579999999999999999987   3445678777665431  11   111    11 235677666 887742111223


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHh-cccCCCeEEEEe
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSG-MLRDGGEVHVSH  153 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~-lL~~~GeIHVTL  153 (389)
                      ...||.|+.+..|.      +           +..+|..+.. +|++||.+.+.-
T Consensus       150 ~~~fD~I~~d~~~~------~-----------~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          150 EMAHPLIFIDNAHA------N-----------TFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             SSCSSEEEEESSCS------S-----------HHHHHHHHHHHTCCTTCEEEECS
T ss_pred             cCCCCEEEECCchH------h-----------HHHHHHHHHHhhCCCCCEEEEEe
Confidence            34799999988762      1           2357888885 999999999853

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=92.55  E-value=0.93  Score=39.57  Aligned_cols=135  Identities=9%  Similarity=0.057  Sum_probs=78.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH------------HhCCCEEEecccc
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL------------KKLGTCILHGVDA   89 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L------------r~~Gv~VlfgVDA   89 (389)
                      .+..+||-||=|.=-++..||+. |  ..|+|  .|-.+++.+.   |.++....            ...+++++ .-|+
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~-g--~~V~g--vD~S~~~l~~---a~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~d~   91 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQ-G--YHVVG--AELSEAAVER---YFTERGEQPHITSQGDFKVYAAPGIEIW-CGDF   91 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH-C--CEEEE--EEECHHHHHH---HHHHHCSCSEEEEETTEEEEECSSSEEE-EECC
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHC-C--CeEEE--EeCCHHHHHH---HHHHccCCcccccccccccccCCccEEE-ECcc
Confidence            46789999999999999999986 3  35554  5522333332   33222100            01234444 3477


Q ss_pred             CCCCCCCCcCC-CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCe-EEEEecC------CCCCCc
Q 016441           90 TTMELHPDLRT-RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGE-VHVSHKT------TVPFSN  161 (389)
Q Consensus        90 TkL~~~~~Lk~-~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~Ge-IHVTLk~------g~PY~s  161 (389)
                      .++..    .. ..||.|+.++-..-.            +......+++.+..+|+|||. +.+++.-      +.|+. 
T Consensus        92 ~~l~~----~~~~~fD~v~~~~~l~~l------------~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~-  154 (203)
T 1pjz_A           92 FALTA----RDIGHCAAFYDRAAMIAL------------PADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFS-  154 (203)
T ss_dssp             SSSTH----HHHHSEEEEEEESCGGGS------------CHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCC-
T ss_pred             ccCCc----ccCCCEEEEEECcchhhC------------CHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCC-
Confidence            77642    22 579999975432211            122345789999999999998 4555432      33432 


Q ss_pred             ccHHH---HHhhCCcEEEEEeeCCC
Q 016441          162 WNIKE---LAIGSSLSLIWCSEFKI  183 (389)
Q Consensus       162 WnIe~---LAa~aGL~L~~~~~F~~  183 (389)
                      +..++   +.+. |+.+......+.
T Consensus       155 ~~~~el~~~~~~-gf~i~~~~~~~~  178 (203)
T 1pjz_A          155 VPQTWLHRVMSG-NWEVTKVGGQDT  178 (203)
T ss_dssp             CCHHHHHHTSCS-SEEEEEEEESSC
T ss_pred             CCHHHHHHHhcC-CcEEEEeccccc
Confidence            33344   3334 888776655543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=92.54  E-value=0.57  Score=40.50  Aligned_cols=110  Identities=12%  Similarity=0.092  Sum_probs=67.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-----HhCCCEEEeccccCCCCCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-----KKLGTCILHGVDATTMELHP   96 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-----r~~Gv~VlfgVDATkL~~~~   96 (389)
                      .+..+||=||=|.=.++..|++..+ ..++++.-.+  +++.+   .+++++...     ...++.++. -|+..+.   
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~~~~~v~~~~-~d~~~~~---   97 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVS--YSVLE---RAKDRLKIDRLPEMQRKRISLFQ-SSLVYRD---   97 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESC--HHHHH---HHHHHHTGGGSCHHHHTTEEEEE-CCSSSCC---
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECC--HHHHH---HHHHHHHhhccccccCcceEEEe-Ccccccc---
Confidence            3567999999999999999998642 3466665544  33322   133443221     111444443 3664432   


Q ss_pred             CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441           97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                       .....||.|+.+..---.            ...-+..+++.+..+|+++|.+.++..
T Consensus        98 -~~~~~fD~V~~~~~l~~~------------~~~~~~~~l~~~~~~LkpgG~~i~~~~  142 (219)
T 3jwg_A           98 -KRFSGYDAATVIEVIEHL------------DENRLQAFEKVLFEFTRPQTVIVSTPN  142 (219)
T ss_dssp             -GGGTTCSEEEEESCGGGC------------CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             -cccCCCCEEEEHHHHHhC------------CHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence             334789999987542211            112356889999999999996666654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=92.23  E-value=0.18  Score=46.00  Aligned_cols=108  Identities=11%  Similarity=0.106  Sum_probs=68.6

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCc
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDL   98 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~L   98 (389)
                      ......+||=||=|.=.++..||+.+..+..|++.-.+.  +..+   .|++|++...- ..++++ .-||.+.-.  .+
T Consensus        76 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~--~~~~---~a~~~~~~~g~~~~i~~~-~gda~~~l~--~l  147 (247)
T 1sui_A           76 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINK--ENYE---LGLPVIKKAGVDHKIDFR-EGPALPVLD--EM  147 (247)
T ss_dssp             HHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCC--HHHH---HHHHHHHHTTCGGGEEEE-ESCHHHHHH--HH
T ss_pred             HhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCH--HHHH---HHHHHHHHcCCCCCeEEE-ECCHHHHHH--HH
Confidence            345677999999999999999999875445666655553  2222   25556554211 113333 346654211  11


Q ss_pred             -----CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           99 -----RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        99 -----k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                           ....||.|+.+.+.      ++           ...||+.+..+|++||.|.+.
T Consensus       148 ~~~~~~~~~fD~V~~d~~~------~~-----------~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          148 IKDEKNHGSYDFIFVDADK------DN-----------YLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             HHSGGGTTCBSEEEECSCS------TT-----------HHHHHHHHHHHBCTTCCEEEE
T ss_pred             HhccCCCCCEEEEEEcCch------HH-----------HHHHHHHHHHhCCCCeEEEEe
Confidence                 13679999998542      11           347888899999999999874

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=92.23  E-value=0.063  Score=47.66  Aligned_cols=110  Identities=17%  Similarity=0.189  Sum_probs=69.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~Lk~  100 (389)
                      ....+||=||=|.=.++..|++..  ...+++  .|-.+++.+.   |+++.   +..|..|. ..-|+.++..  .+..
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~g--vD~s~~~l~~---a~~~~---~~~~~~v~~~~~d~~~~~~--~~~~  126 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWI--IECNDGVFQR---LRDWA---PRQTHKVIPLKGLWEDVAP--TLPD  126 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEE--EECCHHHHHH---HHHHG---GGCSSEEEEEESCHHHHGG--GSCT
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcC--CCeEEE--EcCCHHHHHH---HHHHH---HhcCCCeEEEecCHHHhhc--ccCC
Confidence            456799999999999999997632  235655  5543444432   44433   33444332 3456666421  2345


Q ss_pred             CCcceEEE-cCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          101 RKFDRIIF-NFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       101 ~~FDrIIF-NFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      ..||.|+. .|+..-    .+      .+......+++.+..+|+|+|.+.+.-
T Consensus       127 ~~fD~V~~d~~~~~~----~~------~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          127 GHFDGILYDTYPLSE----ET------WHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             TCEEEEEECCCCCBG----GG------TTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             CceEEEEECCcccch----hh------hhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            78999999 665411    11      234455678999999999999988653

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=92.10  E-value=0.72  Score=39.49  Aligned_cols=118  Identities=18%  Similarity=0.184  Sum_probs=69.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=+|=|.=.|+..|++. + ...+++.-.+  +++.+   .++.|+.     ++.++. -|+.++.       .
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~--~~~~~---~a~~~~~-----~~~~~~-~d~~~~~-------~  109 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDID--PDAIE---TAKRNCG-----GVNFMV-ADVSEIS-------G  109 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESC--HHHHH---HHHHHCT-----TSEEEE-CCGGGCC-------C
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECC--HHHHH---HHHHhcC-----CCEEEE-CcHHHCC-------C
Confidence            35679999999999999999876 3 3356666554  22222   2444543     565554 4777652       5


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWC  178 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~  178 (389)
                      .||.|+.|-|..-...            .....|++.+..++   |.|.+....   .....+.+++++.| .+...
T Consensus       110 ~~D~v~~~~p~~~~~~------------~~~~~~l~~~~~~~---g~~~~~~~~---~~~~~~~~~~~~~g-~~~~~  167 (200)
T 1ne2_A          110 KYDTWIMNPPFGSVVK------------HSDRAFIDKAFETS---MWIYSIGNA---KARDFLRREFSARG-DVFRE  167 (200)
T ss_dssp             CEEEEEECCCC-------------------CHHHHHHHHHHE---EEEEEEEEG---GGHHHHHHHHHHHE-EEEEE
T ss_pred             CeeEEEECCCchhccC------------chhHHHHHHHHHhc---CcEEEEEcC---chHHHHHHHHHHCC-CEEEE
Confidence            7999999988432200            01135667777777   556666532   22233556666776 54443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=91.95  E-value=0.27  Score=44.09  Aligned_cols=98  Identities=13%  Similarity=0.134  Sum_probs=64.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||-||=|.=.++..|++.++ +..+++.-.+  +...+.   +..+.     ..+.+ ...|+..+.    +...
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~~---a~~~~-----~~~~~-~~~d~~~~~----~~~~  147 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVS--KVAIKA---AAKRY-----PQVTF-CVASSHRLP----FSDT  147 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESC--HHHHHH---HHHHC-----TTSEE-EECCTTSCS----BCTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCC--HHHHHH---HHHhC-----CCcEE-EEcchhhCC----CCCC
Confidence            4678999999999999999998763 3467665443  222221   22221     22433 344776653    3456


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      .||.|+.++..                     .+++.+..+|+++|.+.+.....
T Consensus       148 ~fD~v~~~~~~---------------------~~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          148 SMDAIIRIYAP---------------------CKAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             CEEEEEEESCC---------------------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred             ceeEEEEeCCh---------------------hhHHHHHHhcCCCcEEEEEEcCH
Confidence            89999987651                     24678889999999998876543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=91.94  E-value=0.6  Score=43.65  Aligned_cols=117  Identities=16%  Similarity=0.129  Sum_probs=73.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ...+||=+|=|.=.++.+|++.  ...+++|+-.+ .+.+ +   -|+.|++.+.-.+ +.+ +.-|+.+.     +. .
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis-~~al-~---~A~~n~~~~~l~~~v~~-~~~D~~~~-----~~-~  188 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVS-SKAV-E---IARKNAERHGVSDRFFV-RKGEFLEP-----FK-E  188 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESC-HHHH-H---HHHHHHHHTTCTTSEEE-EESSTTGG-----GG-G
T ss_pred             CCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECC-HHHH-H---HHHHHHHHcCCCCceEE-EECcchhh-----cc-c
Confidence            5578999999999999999987  35577776554 3333 2   3667776553222 333 34466552     11 3


Q ss_pred             Cc---ceEEEcCCCCCCCCCccchHHHH--HhHHHH-----HHHHHhhH-hcccCCCeEEEEecC
Q 016441          102 KF---DRIIFNFPHAGFYGKEDNHLLIE--MHRSLV-----RDFFRNSS-GMLRDGGEVHVSHKT  155 (389)
Q Consensus       102 ~F---DrIIFNFPH~G~~gkED~~r~Ir--~nr~LL-----~~FF~SA~-~lL~~~GeIHVTLk~  155 (389)
                      +|   |.||.|-|-.+...  .....++  -+..|.     ..|++.+. ..|+++|.+.+.+-.
T Consensus       189 ~f~~~D~IvsnPPyi~~~~--~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~  251 (284)
T 1nv8_A          189 KFASIEMILSNPPYVKSSA--HLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  251 (284)
T ss_dssp             GTTTCCEEEECCCCBCGGG--SCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             ccCCCCEEEEcCCCCCccc--ccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            68   99999999887411  0001111  112221     26888888 999999999987644

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=91.81  E-value=0.21  Score=44.69  Aligned_cols=108  Identities=18%  Similarity=0.172  Sum_probs=66.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      .+..+||=||=|.=.++..|++.++.+..|++.-.+  ++..+   .|++|++...-. .+.++ .-|+...-.......
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~--~~~~~---~a~~~~~~~g~~~~i~~~-~~d~~~~l~~l~~~~  144 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQD--PNATA---IAKKYWQKAGVAEKISLR-LGPALATLEQLTQGK  144 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESC--HHHHH---HHHHHHHHHTCGGGEEEE-ESCHHHHHHHHHTSS
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEEE-EcCHHHHHHHHHhcC
Confidence            456799999999999999999887534456655443  33332   255565543211 13333 335433110000112


Q ss_pred             --CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          101 --RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       101 --~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                        ..||.|+.+.+.      ++           ...+|..+..+|+++|.|.+.
T Consensus       145 ~~~~fD~V~~d~~~------~~-----------~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          145 PLPEFDLIFIDADK------RN-----------YPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             SCCCEEEEEECSCG------GG-----------HHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCcCEEEECCCH------HH-----------HHHHHHHHHHHcCCCeEEEEe
Confidence              679999988651      11           346889999999999999884

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=91.61  E-value=0.92  Score=43.94  Aligned_cols=136  Identities=19%  Similarity=0.100  Sum_probs=84.4

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeccccCCCCCCCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT---CILHGVDATTMELHPD   97 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv---~VlfgVDATkL~~~~~   97 (389)
                      ...+.+||=+|=|.=.++..+|... ....|++.-.+. + +.+   .|+.|++.   .|+   .-+..-|+.++..   
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~-~-~l~---~A~~n~~~---~gl~~~i~~~~~D~~~~~~---  282 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYR-K-HLI---GAEMNALA---AGVLDKIKFIQGDATQLSQ---  282 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCH-H-HHH---HHHHHHHH---TTCGGGCEEEECCGGGGGG---
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCH-H-HHH---HHHHHHHH---cCCCCceEEEECChhhCCc---
Confidence            4567789988888878888888753 223677766553 2 222   36666654   342   2334558887642   


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEE
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIW  177 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~  177 (389)
                       ....||.||.|.|---..+...      ....|...|++.+..+|  +|.+.+...     +.-.++++..+.|+...+
T Consensus       283 -~~~~fD~Ii~npPyg~r~~~~~------~~~~ly~~~~~~l~r~l--~g~~~~i~~-----~~~~~~~~~~~~G~~~~~  348 (373)
T 3tm4_A          283 -YVDSVDFAISNLPYGLKIGKKS------MIPDLYMKFFNELAKVL--EKRGVFITT-----EKKAIEEAIAENGFEIIH  348 (373)
T ss_dssp             -TCSCEEEEEEECCCC------C------CHHHHHHHHHHHHHHHE--EEEEEEEES-----CHHHHHHHHHHTTEEEEE
T ss_pred             -ccCCcCEEEECCCCCcccCcch------hHHHHHHHHHHHHHHHc--CCeEEEEEC-----CHHHHHHHHHHcCCEEEE
Confidence             2367999999999643222111      23456788999999988  454444433     223566777889999988


Q ss_pred             EeeCC
Q 016441          178 CSEFK  182 (389)
Q Consensus       178 ~~~F~  182 (389)
                      +.++.
T Consensus       349 ~~~~~  353 (373)
T 3tm4_A          349 HRVIG  353 (373)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=91.60  E-value=0.071  Score=48.56  Aligned_cols=108  Identities=13%  Similarity=0.150  Sum_probs=70.2

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCc
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDL   98 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~L   98 (389)
                      ...+..+||=||=|.=..++.||+.++.+..|++.-.+..  .   ...|++|++...-. .++++ .-||..+-.  .+
T Consensus        57 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~--~---~~~a~~~~~~~g~~~~i~~~-~gda~~~l~--~~  128 (242)
T 3r3h_A           57 RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEG--W---TKHAHPYWREAKQEHKIKLR-LGPALDTLH--SL  128 (242)
T ss_dssp             HHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCS--S---CCCSHHHHHHTTCTTTEEEE-ESCHHHHHH--HH
T ss_pred             hhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHH--H---HHHHHHHHHHcCCCCcEEEE-EcCHHHHHH--HH
Confidence            3456789999999999999999998754557777666532  1   12355666543322 23333 346654311  11


Q ss_pred             ----CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           99 ----RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        99 ----k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                          ....||.|+.+.++.      +           ...||+.+..+|++||.|.+.
T Consensus       129 ~~~~~~~~fD~V~~d~~~~------~-----------~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          129 LNEGGEHQFDFIFIDADKT------N-----------YLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             HHHHCSSCEEEEEEESCGG------G-----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhccCCCCEeEEEEcCChH------H-----------hHHHHHHHHHhcCCCeEEEEE
Confidence                036799999986521      1           235888999999999999883

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=91.44  E-value=1.3  Score=40.76  Aligned_cols=133  Identities=14%  Similarity=0.029  Sum_probs=76.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHH---------HH--------HhCCCEEEe
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLD---------NL--------KKLGTCILH   85 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~---------~L--------r~~Gv~Vlf   85 (389)
                      +..+||-||=|+=-++..||+. |  ..||  ..|-.+++.+.   |.....         ..        ...++++ .
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~-G--~~V~--gvD~S~~~i~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~  138 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR-G--HTVV--GVEISEIGIRE---FFAEQNLSYTEEPLAEIAGAKVFKSSSGSISL-Y  138 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT-T--CEEE--EECSCHHHHHH---HHHHTTCCEEEEECTTSTTCEEEEETTSSEEE-E
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC-C--CeEE--EEECCHHHHHH---HHHhcccccccccccccccccccccCCCceEE-E
Confidence            6779999999999999999975 3  4555  45633333332   221111         00        0122333 3


Q ss_pred             ccccCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEE-EEec------CCCC
Q 016441           86 GVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVH-VSHK------TTVP  158 (389)
Q Consensus        86 gVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIH-VTLk------~g~P  158 (389)
                      .-|+.++...   ....||.|+.+.-....            +......+++.+..+|+|||.+. +|+.      .+.|
T Consensus       139 ~~D~~~l~~~---~~~~FD~V~~~~~l~~l------------~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~  203 (252)
T 2gb4_A          139 CCSIFDLPRA---NIGKFDRIWDRGALVAI------------NPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPP  203 (252)
T ss_dssp             ESCTTTGGGG---CCCCEEEEEESSSTTTS------------CGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSS
T ss_pred             ECccccCCcc---cCCCEEEEEEhhhhhhC------------CHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCC
Confidence            4477776421   12689999976543322            11123578999999999999985 6665      2334


Q ss_pred             CCcccHHHH---HhhCCcEEEEEeeC
Q 016441          159 FSNWNIKEL---AIGSSLSLIWCSEF  181 (389)
Q Consensus       159 Y~sWnIe~L---Aa~aGL~L~~~~~F  181 (389)
                      +. +...++   ... +|.++....+
T Consensus       204 ~~-~~~~el~~~l~~-~f~v~~~~~~  227 (252)
T 2gb4_A          204 FY-VPSAELKRLFGT-KCSMQCLEEV  227 (252)
T ss_dssp             CC-CCHHHHHHHHTT-TEEEEEEEEE
T ss_pred             CC-CCHHHHHHHhhC-CeEEEEEecc
Confidence            32 444443   333 4777665533

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=91.43  E-value=0.74  Score=40.49  Aligned_cols=118  Identities=8%  Similarity=0.044  Sum_probs=76.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccC-CCCCCCCcC-
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDAT-TMELHPDLR-   99 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDAT-kL~~~~~Lk-   99 (389)
                      .+..+||=||=|.=.++..|++.   +..++++-.+  ..+.+.   ++.+     ..++.++ ..|+. .+.    +. 
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s--~~~~~~---a~~~-----~~~~~~~-~~d~~~~~~----~~~  108 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFS--PELLKL---ARAN-----APHADVY-EWNGKGELP----AGL  108 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESC--HHHHHH---HHHH-----CTTSEEE-ECCSCSSCC----TTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECC--HHHHHH---HHHh-----CCCceEE-EcchhhccC----CcC
Confidence            46789999999999999999987   3467766443  222221   3333     2244444 34553 322    33 


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      ...||.|+.+..                    ...+++.+..+|+|+|.+...   +...+.-.+.++.+++|+......
T Consensus       109 ~~~fD~v~~~~~--------------------~~~~l~~~~~~LkpgG~l~~~---~~~~~~~~~~~~l~~~Gf~~~~~~  165 (226)
T 3m33_A          109 GAPFGLIVSRRG--------------------PTSVILRLPELAAPDAHFLYV---GPRLNVPEVPERLAAVGWDIVAED  165 (226)
T ss_dssp             CCCEEEEEEESC--------------------CSGGGGGHHHHEEEEEEEEEE---ESSSCCTHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEeCCC--------------------HHHHHHHHHHHcCCCcEEEEe---CCcCCHHHHHHHHHHCCCeEEEEE
Confidence            578999999821                    125677888999999998811   112344467888899999877654


Q ss_pred             e
Q 016441          180 E  180 (389)
Q Consensus       180 ~  180 (389)
                      .
T Consensus       166 ~  166 (226)
T 3m33_A          166 H  166 (226)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=91.27  E-value=0.13  Score=46.45  Aligned_cols=110  Identities=13%  Similarity=0.028  Sum_probs=68.4

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCC-
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPD-   97 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~-   97 (389)
                      ...+..+||=||=|.=..++.||++++....|++.-.+  ++..+   .+++|++...-. .+.++ .-||.+.-.... 
T Consensus        67 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~--~~~~~---~a~~~~~~~g~~~~i~~~-~gda~~~l~~l~~  140 (237)
T 3c3y_A           67 KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFD--REAYE---IGLPFIRKAGVEHKINFI-ESDAMLALDNLLQ  140 (237)
T ss_dssp             HHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESC--HHHHH---HHHHHHHHTTCGGGEEEE-ESCHHHHHHHHHH
T ss_pred             HhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEEE-EcCHHHHHHHHHh
Confidence            34567899999999999999999987545566665544  33322   355565542111 13333 346654211000 


Q ss_pred             --cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           98 --LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        98 --Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                        .....||.|+.+.++      +           ....||+.+..+|++||.|.+.
T Consensus       141 ~~~~~~~fD~I~~d~~~------~-----------~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          141 GQESEGSYDFGFVDADK------P-----------NYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             STTCTTCEEEEEECSCG------G-----------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCCCcCEEEECCch------H-----------HHHHHHHHHHHhcCCCeEEEEe
Confidence              013679999987432      1           1357899999999999999875

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=91.03  E-value=0.52  Score=43.25  Aligned_cols=116  Identities=15%  Similarity=0.116  Sum_probs=65.5

Q ss_pred             CCCeEEEEecCChhHHHHHHHHh---CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEE-eccccCCCCCC--
Q 016441           23 SNHQILLVGEGDFSFSLCLALAF---GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCIL-HGVDATTMELH--   95 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~---gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~Vl-fgVDATkL~~~--   95 (389)
                      +..+||=||=|.=.++..+++.+   .....+..|..|..+++.+.   +++.+...... ++.+. ...|+..+...  
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~---a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAK---YKELVAKTSNLENVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHH---HHHHHHTCSSCTTEEEEEECSCHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHH---HHHHHHhccCCCcceEEEEecchhhhhhhhc
Confidence            45689999988777776554332   12334445778865666554   33333211111 22332 23344333210  


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      ..+....||.|+.++=---.   +|           +..+++.+..+|+|||.+.|....
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~---~d-----------~~~~l~~~~r~LkpgG~l~i~~~~  174 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYV---KD-----------IPATLKFFHSLLGTNAKMLIIVVS  174 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGC---SC-----------HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccCCCceeEEEEeeeeeec---CC-----------HHHHHHHHHHHcCCCcEEEEEEec
Confidence            01234789999987532221   22           346888899999999999998644

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=90.99  E-value=3  Score=41.25  Aligned_cols=136  Identities=14%  Similarity=0.134  Sum_probs=79.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ..+.+||=+|=|.=.|++.||+.   ...++|.-.+  ++..+   .|+.|++...-.++.+ ..-|+.+.-....+...
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s--~~al~---~A~~n~~~~~~~~v~f-~~~d~~~~l~~~~~~~~  355 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGV--PALVE---KGQQNARLNGLQNVTF-YHENLEEDVTKQPWAKN  355 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESC--HHHHH---HHHHHHHHTTCCSEEE-EECCTTSCCSSSGGGTT
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCC--HHHHH---HHHHHHHHcCCCceEE-EECCHHHHhhhhhhhcC
Confidence            45678999998888888899876   3467666544  23332   3666765432123333 34577663222223446


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      .||.|+.|-|-.|.   ++      .-+.|..         +++++-|+|+- +  |-....-...-.+.|+.+....+|
T Consensus       356 ~fD~Vv~dPPr~g~---~~------~~~~l~~---------~~p~~ivyvsc-~--p~tlard~~~l~~~Gy~~~~~~~~  414 (433)
T 1uwv_A          356 GFDKVLLDPARAGA---AG------VMQQIIK---------LEPIRIVYVSC-N--PATLARDSEALLKAGYTIARLAML  414 (433)
T ss_dssp             CCSEEEECCCTTCC---HH------HHHHHHH---------HCCSEEEEEES-C--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCEEEECCCCccH---HH------HHHHHHh---------cCCCeEEEEEC-C--hHHHHhhHHHHHHCCcEEEEEEEe
Confidence            79999999999984   11      1122221         56766666653 2  211111112234579999998888


Q ss_pred             CCCCCCCC
Q 016441          182 KIEDYPAY  189 (389)
Q Consensus       182 ~~~~YPGY  189 (389)
                      |  .||.=
T Consensus       415 d--~Fp~t  420 (433)
T 1uwv_A          415 D--MFPHT  420 (433)
T ss_dssp             C--CSTTS
T ss_pred             c--cCCCC
Confidence            7  57743

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=90.86  E-value=0.78  Score=43.82  Aligned_cols=127  Identities=17%  Similarity=0.151  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      +....+||=||=|.=.++..|++.+.   ++.++.+|- ..+.+.   +..    +  .+++++. -|+.+ .    +. 
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~---~~~~~~~D~-~~~~~~---a~~----~--~~v~~~~-~d~~~-~----~~-  266 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYP---LIKGINFDL-PQVIEN---APP----L--SGIEHVG-GDMFA-S----VP-  266 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTT---CCC----C--TTEEEEE-CCTTT-C----CC-
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCC---CCeEEEeCh-HHHHHh---hhh----c--CCCEEEe-CCccc-C----CC-
Confidence            45678999999999999999999863   456777887 444432   211    1  2444443 36654 1    22 


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe---cCC---------------------
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH---KTT---------------------  156 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL---k~g---------------------  156 (389)
                      . ||.|+.++----.   .|         .-...+++.+..+|+|+|.+.|.-   .+.                     
T Consensus       267 ~-~D~v~~~~~lh~~---~d---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~  333 (372)
T 1fp1_D          267 Q-GDAMILKAVCHNW---SD---------EKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV  333 (372)
T ss_dssp             C-EEEEEEESSGGGS---CH---------HHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred             C-CCEEEEecccccC---CH---------HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhcc
Confidence            2 9999998653211   11         113478899999999999988872   111                     


Q ss_pred             --CCCCcccHHHHHhhCCcEEEEEee
Q 016441          157 --VPFSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       157 --~PY~sWnIe~LAa~aGL~L~~~~~  180 (389)
                        ..++.=+++++.+++||..++..+
T Consensus       334 ~~~~~t~~e~~~ll~~aGf~~~~~~~  359 (372)
T 1fp1_D          334 GGRERTEKQYEKLSKLSGFSKFQVAC  359 (372)
T ss_dssp             SCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCccCCHHHHHHHHHHCCCceEEEEE
Confidence              111122345677788888887665

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=90.55  E-value=3.2  Score=37.67  Aligned_cols=147  Identities=14%  Similarity=0.133  Sum_probs=82.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHH---Hhhh---------hHHHHHHHHHhCC----------
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVI---QKYK---------RAKSNLDNLKKLG----------   80 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~---~KY~---------~A~~Ni~~Lr~~G----------   80 (389)
                      +..+||=||=|.=.++..++...  +..|+++-+. .+.+.   ++..         ....|+..++...          
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  147 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFL-EVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  147 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSC-HHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccC--CCeEEEeCCC-HHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence            56789999887765444333322  3477776553 33332   1111         0113444443211          


Q ss_pred             ---CEEEeccccCC-CCCC-CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441           81 ---TCILHGVDATT-MELH-PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus        81 ---v~VlfgVDATk-L~~~-~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                         +.-+...|+++ +... ..+....||.|+.++-.--          +...-.=...+|+.+..+|+|||.+.++-..
T Consensus       148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~----------~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~  217 (289)
T 2g72_A          148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA----------VSPDLASFQRALDHITTLLRPGGHLLLIGAL  217 (289)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH----------HCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhh----------hcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence               12234458776 3211 1233467999999973111          0000122467889999999999999886321


Q ss_pred             C-------------CCCCcccHHHHHhhCCcEEEEEeeCC
Q 016441          156 T-------------VPFSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       156 g-------------~PY~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                      .             .+++.=.+.++.+++||.++....+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          218 EESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             SCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence            1             12344456778889999998877655

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=90.35  E-value=1.1  Score=42.88  Aligned_cols=128  Identities=16%  Similarity=0.127  Sum_probs=80.2

Q ss_pred             CCCCCCeEEEEecC------ChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCC
Q 016441           20 HYSSNHQILLVGEG------DFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTME   93 (389)
Q Consensus        20 ~Yss~~rILLVGEG------DFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~   93 (389)
                      ...++.+||=+|=|      .=|  ..+++..+....|+|.-+...             +     .++++...-|++++.
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-----~~v~~~i~gD~~~~~  119 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-----SDADSTLIGDCATVH  119 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-----CSSSEEEESCGGGCC
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-----CCCEEEEECccccCC
Confidence            34567899999993      244  334555553457887766543             1     256661334777754


Q ss_pred             CCCCcCCCCcceEEEcCCCC--CCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhC
Q 016441           94 LHPDLRTRKFDRIIFNFPHA--GFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGS  171 (389)
Q Consensus        94 ~~~~Lk~~~FDrIIFNFPH~--G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~a  171 (389)
                      .     ...||.|+-|.++.  |... .+.    .....++...++.+..+|+++|.+.+....+..  .-.+.++.++.
T Consensus       120 ~-----~~~fD~Vvsn~~~~~~g~~~-~d~----~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~--~~~l~~~l~~~  187 (290)
T 2xyq_A          120 T-----ANKWDLIISDMYDPRTKHVT-KEN----DSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW--NADLYKLMGHF  187 (290)
T ss_dssp             C-----SSCEEEEEECCCCCC---CC-SCC----CCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC--CHHHHHHHTTE
T ss_pred             c-----cCcccEEEEcCCcccccccc-ccc----cchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC--HHHHHHHHHHc
Confidence            2     15799999996432  3211 111    112346678899999999999999997766532  23677777778


Q ss_pred             CcEEEEEe
Q 016441          172 SLSLIWCS  179 (389)
Q Consensus       172 GL~L~~~~  179 (389)
                      |+.-++..
T Consensus       188 GF~~v~~~  195 (290)
T 2xyq_A          188 SWWTAFVT  195 (290)
T ss_dssp             EEEEEEEE
T ss_pred             CCcEEEEE
Confidence            87655554

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=90.15  E-value=0.93  Score=42.60  Aligned_cols=109  Identities=12%  Similarity=0.091  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC-CCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH-PDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~-~~Lk   99 (389)
                      -.++.+||=||=|.=.++..|++.   +..|+|.  |..+.+.+   .+++++..   .    ...+|+.++... ....
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gv--D~S~~ml~---~Ar~~~~~---~----~v~~~~~~~~~~~~~~~  107 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALER---GASVTVF--DFSQRMCD---DLAEALAD---R----CVTIDLLDITAEIPKEL  107 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHT---TCEEEEE--ESCHHHHH---HHHHHTSS---S----CCEEEECCTTSCCCGGG
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhc---CCEEEEE--ECCHHHHH---HHHHHHHh---c----cceeeeeeccccccccc
Confidence            356789999999999999999985   3467665  43333333   24444322   1    233455444320 0011


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                      ...||.|+.|+.---.            ..+-+..+++....+| |+|.+.++.+.+.
T Consensus       108 ~~~fD~Vv~~~~l~~~------------~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~  152 (261)
T 3iv6_A          108 AGHFDFVLNDRLINRF------------TTEEARRACLGMLSLV-GSGTVRASVKLGF  152 (261)
T ss_dssp             TTCCSEEEEESCGGGS------------CHHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred             CCCccEEEEhhhhHhC------------CHHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence            3689999998642111            0112446677778889 9999999998764

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=90.11  E-value=0.085  Score=53.01  Aligned_cols=138  Identities=18%  Similarity=0.160  Sum_probs=77.4

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhh-hhH-HHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKY-KRA-KSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY-~~A-~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      .++||++|=||-+-++.++++ . ...|++--+|.. -++.++| |.. ....+..+...++|+.+ ||.+--+...-..
T Consensus       206 pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~-Da~~fl~~~~~~~  282 (381)
T 3c6k_A          206 GKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIE-DCIPVLKRYAKEG  282 (381)
T ss_dssp             TCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEES-CHHHHHHHHHHHT
T ss_pred             CCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehH-HHHHHHHhhhhcc
Confidence            468999999999999999875 3 367887777743 2344555 221 11111222233455543 5443111000124


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHH-HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC---CcccHHHHHhhC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIE-MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF---SNWNIKELAIGS  171 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir-~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY---~sWnIe~LAa~a  171 (389)
                      ++||.||-+.+.....+.-     .. .....-+.||+.|+..|+++|-+ |+-.+. |+   ..|.+.+.-++.
T Consensus       283 ~~yDvIIvDl~D~~~s~~p-----~g~a~~Lft~eFy~~~~~~L~p~GVl-v~Q~~s-~~~~~~~~~i~~tl~~v  350 (381)
T 3c6k_A          283 REFDYVINDLTAVPISTSP-----EEDSTWEFLRLILDLSMKVLKQDGKY-FTQGNC-VNLTEALSLYEEQLGRL  350 (381)
T ss_dssp             CCEEEEEEECCSSCCCCC---------CHHHHHHHHHHHHHHTEEEEEEE-EEEEEE-TTCHHHHHHHHHHHTTS
T ss_pred             CceeEEEECCCCCcccCcc-----cCcchHHHHHHHHHHHHHhcCCCCEE-EEecCC-CcchhHHHHHHHHHHHh
Confidence            6899999998764321100     11 23344689999999999999865 443322 33   235565544443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=90.01  E-value=0.61  Score=40.64  Aligned_cols=101  Identities=13%  Similarity=0.180  Sum_probs=64.6

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..+..+||=||=|.=.++..|++..   ..+++.-.+  +++.+   .+..++....  ++.++ ..|+.+.-    ...
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~--~~~~~---~a~~~~~~~~--~v~~~-~~d~~~~~----~~~  132 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEIN--EKMYN---YASKLLSYYN--NIKLI-LGDGTLGY----EEE  132 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESC--HHHHH---HHHHHHTTCS--SEEEE-ESCGGGCC----GGG
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCC--HHHHH---HHHHHHhhcC--CeEEE-ECCccccc----ccC
Confidence            3567899999999999999998863   467766554  33332   2444443221  34443 34666511    124


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      ..||.|+.+.+--..   .                 ..+..+|+++|.+.++..+.
T Consensus       133 ~~fD~v~~~~~~~~~---~-----------------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          133 KPYDRVVVWATAPTL---L-----------------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             CCEEEEEESSBBSSC---C-----------------HHHHHTEEEEEEEEEEECSS
T ss_pred             CCccEEEECCcHHHH---H-----------------HHHHHHcCCCcEEEEEEcCC
Confidence            679999998754322   0                 13677999999999987654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=90.00  E-value=2.6  Score=40.24  Aligned_cols=135  Identities=13%  Similarity=0.035  Sum_probs=82.2

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      .++...+||=||=|.=.++.+|++++.   ++.+|.+|..+.+.    .++++++.-....++++- -|.-+   . .+ 
T Consensus       176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p---~~~~~~~dlp~v~~----~a~~~~~~~~~~rv~~~~-gD~~~---~-~~-  242 (353)
T 4a6d_A          176 DLSVFPLMCDLGGGAGALAKECMSLYP---GCKITVFDIPEVVW----TAKQHFSFQEEEQIDFQE-GDFFK---D-PL-  242 (353)
T ss_dssp             CGGGCSEEEEETCTTSHHHHHHHHHCS---SCEEEEEECHHHHH----HHHHHSCC--CCSEEEEE-SCTTT---S-CC-
T ss_pred             CcccCCeEEeeCCCCCHHHHHHHHhCC---CceeEeccCHHHHH----HHHHhhhhcccCceeeec-Ccccc---C-CC-
Confidence            356677999999999999999999973   56778889755442    244444322222344432 24432   1 12 


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC-----CCC----------------
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT-----TVP----------------  158 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~-----g~P----------------  158 (389)
                       ..+|.|++..=--.+   .|         +=....++++.+.|+|+|.|.|.=.-     ..|                
T Consensus       243 -~~~D~~~~~~vlh~~---~d---------~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g  309 (353)
T 4a6d_A          243 -PEADLYILARVLHDW---AD---------GKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEG  309 (353)
T ss_dssp             -CCCSEEEEESSGGGS---CH---------HHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSC
T ss_pred             -CCceEEEeeeecccC---CH---------HHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCC
Confidence             347888875421111   11         11335678888999999999886421     112                


Q ss_pred             --CCcccHHHHHhhCCcEEEEEee
Q 016441          159 --FSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       159 --Y~sWnIe~LAa~aGL~L~~~~~  180 (389)
                        ++.=+.+++.+++||+.++..+
T Consensus       310 ~ert~~e~~~ll~~AGf~~v~v~~  333 (353)
T 4a6d_A          310 QERTPTHYHMLLSSAGFRDFQFKK  333 (353)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEEEC
T ss_pred             cCCCHHHHHHHHHHCCCceEEEEE
Confidence              2222356788999999888754

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=89.89  E-value=0.2  Score=45.45  Aligned_cols=114  Identities=22%  Similarity=0.224  Sum_probs=69.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh----CCCEEEeccccCCCCCCCCc
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK----LGTCILHGVDATTMELHPDL   98 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~----~Gv~VlfgVDATkL~~~~~L   98 (389)
                      +..+||=||=|.=.++..|++.   +.+++++-.+  .++.+   .+..++.....    ..+ .+...|+..+.... +
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s--~~~l~---~a~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~-~  126 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEE---GFSVTSVDAS--DKMLK---YALKERWNRRKEPAFDKW-VIEEANWLTLDKDV-P  126 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHHHHTTTSHHHHTC-EEEECCGGGHHHHS-C
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCeEEEEECC--HHHHH---HHHHhhhhccccccccee-eEeecChhhCcccc-c
Confidence            5679999999999999999886   2366665443  22322   13334322111    122 23345666553211 3


Q ss_pred             CCCCcceEEEc---CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441           99 RTRKFDRIIFN---FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus        99 k~~~FDrIIFN---FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      ....||.|+.+   +-|+.. ..        ...+....+++.+..+|+|||.+.++..+
T Consensus       127 ~~~~fD~V~~~g~~l~~~~~-~~--------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          127 AGDGFDAVICLGNSFAHLPD-SK--------GDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             CTTCEEEEEECTTCGGGSCC-SS--------SSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cCCCeEEEEEcChHHhhcCc-cc--------cCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            45789999986   344431 00        01233567899999999999999998764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=89.48  E-value=4.2  Score=40.50  Aligned_cols=127  Identities=17%  Similarity=0.226  Sum_probs=76.8

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..++.+||=+|=|.=.|++.||+.   +..++|.-.+  +++.+   .|+.|++... ..+. ...-|+.++..      
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s--~~ai~---~A~~n~~~ng-l~v~-~~~~d~~~~~~------  351 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSN--EFAIE---MARRNVEINN-VDAE-FEVASDREVSV------  351 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHHHHHT-CCEE-EEECCTTTCCC------
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECC--HHHHH---HHHHHHHHcC-CcEE-EEECChHHcCc------
Confidence            456789999999988999999875   3466665444  33332   3666765432 2233 34457776532      


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEee
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~  180 (389)
                      ..||.||.|-|..|.   .         ..    +++... .|+++|.|.|+..   |..  -..+++.-. +.+.+..+
T Consensus       352 ~~fD~Vv~dPPr~g~---~---------~~----~~~~l~-~l~p~givyvsc~---p~t--larDl~~l~-y~l~~~~~  408 (425)
T 2jjq_A          352 KGFDTVIVDPPRAGL---H---------PR----LVKRLN-REKPGVIVYVSCN---PET--FARDVKMLD-YRIDEIVA  408 (425)
T ss_dssp             TTCSEEEECCCTTCS---C---------HH----HHHHHH-HHCCSEEEEEESC---HHH--HHHHHHHSS-CCEEEEEE
T ss_pred             cCCCEEEEcCCccch---H---------HH----HHHHHH-hcCCCcEEEEECC---hHH--HHhHHhhCe-EEEEEEEE
Confidence            179999999998764   1         11    122121 2789998888742   211  112222222 88888888


Q ss_pred             CCCCCCCC
Q 016441          181 FKIEDYPA  188 (389)
Q Consensus       181 F~~~~YPG  188 (389)
                      ||  .||.
T Consensus       409 ~D--mFP~  414 (425)
T 2jjq_A          409 LD--MFPH  414 (425)
T ss_dssp             EC--CSTT
T ss_pred             EC--cCCC
Confidence            87  5774

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=89.44  E-value=0.74  Score=40.49  Aligned_cols=113  Identities=9%  Similarity=0.016  Sum_probs=69.0

Q ss_pred             ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC
Q 016441           18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD   97 (389)
Q Consensus        18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~   97 (389)
                      +.+..+..+||=||=|.=.++..|++...   ++++.-.+  ..+.+.   ++.+.   ...++.+ ...|+.++.....
T Consensus        51 ~~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s--~~~~~~---a~~~~---~~~~~~~-~~~d~~~~~~~~~  118 (245)
T 3ggd_A           51 ELLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVS--KSALEI---AAKEN---TAANISY-RLLDGLVPEQAAQ  118 (245)
T ss_dssp             TTTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESC--HHHHHH---HHHHS---CCTTEEE-EECCTTCHHHHHH
T ss_pred             hhccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECC--HHHHHH---HHHhC---cccCceE-EECcccccccccc
Confidence            33456778999999999999999998742   67766443  333321   33332   1223443 3457766532211


Q ss_pred             cC-CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441           98 LR-TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus        98 Lk-~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      +. ...||.|+.+.-..-. ..++           ...+++.+..+|+++|.+.|.-.
T Consensus       119 ~~~~~~~d~v~~~~~~~~~-~~~~-----------~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          119 IHSEIGDANIYMRTGFHHI-PVEK-----------RELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             HHHHHCSCEEEEESSSTTS-CGGG-----------HHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             cccccCccEEEEcchhhcC-CHHH-----------HHHHHHHHHHHcCCCCEEEEEeC
Confidence            11 1348999998654432 1111           35788899999999999776654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=87.56  E-value=0.4  Score=43.12  Aligned_cols=109  Identities=16%  Similarity=0.105  Sum_probs=68.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~Lk~  100 (389)
                      .++.+||=||=|.=..+..|++..  +..+|+  .|-..++.++   |+++.   +..+..+. ...||..+..  .+..
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~--id~~~~~~~~---a~~~~---~~~~~~~~~~~~~a~~~~~--~~~~  126 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWI--IECNDGVFQR---LRDWA---PRQTHKVIPLKGLWEDVAP--TLPD  126 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSC--EEEEEE--EECCHHHHHH---HHHHG---GGCSSEEEEEESCHHHHGG--GSCT
T ss_pred             cCCCeEEEECCCccHHHHHHHHhC--CcEEEE--EeCCHHHHHH---HHHHH---hhCCCceEEEeehHHhhcc--cccc
Confidence            467899999999999998888754  346665  4433444432   43332   33443332 3456655432  2345


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV  151 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV  151 (389)
                      ..||.|+|+=.....         ...|..-...||+.+..+|+|||.+..
T Consensus       127 ~~FD~i~~D~~~~~~---------~~~~~~~~~~~~~e~~rvLkPGG~l~f  168 (236)
T 3orh_A          127 GHFDGILYDTYPLSE---------ETWHTHQFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             TCEEEEEECCCCCBG---------GGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             cCCceEEEeeeeccc---------chhhhcchhhhhhhhhheeCCCCEEEE
Confidence            789999997322211         113444567889999999999998764

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=87.53  E-value=2.1  Score=42.16  Aligned_cols=95  Identities=14%  Similarity=0.128  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhC-----CCEEEeccccCCCCCCCCcCCCCcceEEEcCCCCCC---C-CCcc------chHHHHHhHHHHH
Q 016441           69 AKSNLDNLKKL-----GTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGF---Y-GKED------NHLLIEMHRSLVR  133 (389)
Q Consensus        69 A~~Ni~~Lr~~-----Gv~VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~---~-gkED------~~r~Ir~nr~LL~  133 (389)
                      .++|++.+.-.     ....+...|++++..   +....||+|+-+=|+.|.   . .++.      ....+..-..|=.
T Consensus       188 l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~---~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~  264 (359)
T 4fzv_A          188 LQKILHSYVPEEIRDGNQVRVTSWDGRKWGE---LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQV  264 (359)
T ss_dssp             HHHHHHHHSCTTTTTSSSEEEECCCGGGHHH---HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHH
T ss_pred             HHHHHHHhhhhhhccCCceEEEeCchhhcch---hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHH
Confidence            45676665321     123455678877643   235789999999999982   1 1111      1223333334445


Q ss_pred             HHHHhhHhcccCCCeEEEEecCCCCCCcccHHH
Q 016441          134 DFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKE  166 (389)
Q Consensus       134 ~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~  166 (389)
                      ..+.+|..+|++||.+.-+.|+=.|-..-.+++
T Consensus       265 ~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~  297 (359)
T 4fzv_A          265 QLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQ  297 (359)
T ss_dssp             HHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHH
T ss_pred             HHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHH
Confidence            678899999999999999999988876655555

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=86.08  E-value=2.6  Score=38.15  Aligned_cols=146  Identities=10%  Similarity=0.110  Sum_probs=81.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH--HHHHHhhhh-----------------------HHHHHHHH
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY--DDVIQKYKR-----------------------AKSNLDNL   76 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe--eeL~~KY~~-----------------------A~~Ni~~L   76 (389)
                      .++.+||=||=|.=-++..++.. + ..+|+|+=+...  +.+.++...                       +++..+.+
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~-~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACD-S-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG-T-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHh-h-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            35678999999985565555433 2 236777655421  111111100                       00000111


Q ss_pred             HhCCCEEEeccccCCCCCCCCcCCCCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441           77 KKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus        77 r~~Gv~VlfgVDATkL~~~~~Lk~~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      +. .++-..-.|+++...-..+....||.|+-+|=  |+..            +..=+...++++..+|+|||.+.++-.
T Consensus       132 ~~-~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~------------~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          132 RA-AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC------------SLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             HH-HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS------------SHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             Hh-hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcC------------CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            11 23224556777743211122458999999872  2221            112245788999999999999998853


Q ss_pred             CCC-------------CCCcccHHHHHhhCCcEEEEEeeCC
Q 016441          155 TTV-------------PFSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       155 ~g~-------------PY~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                      ...             +++.=.+.++.+++||.+++...+.
T Consensus       199 ~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~  239 (263)
T 2a14_A          199 LRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSP  239 (263)
T ss_dssp             SSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             ecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence            221             1233356778889999998877664

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=86.01  E-value=2.5  Score=39.95  Aligned_cols=126  Identities=12%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      +...+||=||=|.=.++..|++.+.   ++..|.+|-. .+.+.   +..    +  .++++.. .|+.+ .    +.  
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~~-~~~~~---a~~----~--~~v~~~~-~d~~~-~----~~--  250 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFP---HLKCTVFDQP-QVVGN---LTG----N--ENLNFVG-GDMFK-S----IP--  250 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCT---TSEEEEEECH-HHHSS---CCC----C--SSEEEEE-CCTTT-C----CC--
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCC---CCeEEEeccH-HHHhh---ccc----C--CCcEEEe-CccCC-C----CC--
Confidence            5678999999999999999999873   3456677863 44332   211    1  2444443 36554 1    22  


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccC---CCeEEEEecC-CC--------------------
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRD---GGEVHVSHKT-TV--------------------  157 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~---~GeIHVTLk~-g~--------------------  157 (389)
                      .||.|+.++.---.   .|         .-...+++.+..+|+|   +|.+.|.-.. ..                    
T Consensus       251 ~~D~v~~~~vlh~~---~d---------~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~  318 (358)
T 1zg3_A          251 SADAVLLKWVLHDW---ND---------EQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLT  318 (358)
T ss_dssp             CCSEEEEESCGGGS---CH---------HHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEcccccCC---CH---------HHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhc
Confidence            39999998763322   11         1134778889999999   9988875321 11                    


Q ss_pred             -----CCCcccHHHHHhhCCcEEEEEee
Q 016441          158 -----PFSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       158 -----PY~sWnIe~LAa~aGL~L~~~~~  180 (389)
                           .++.=+++++.+++||..++..+
T Consensus       319 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~  346 (358)
T 1zg3_A          319 MFLGKERTKQEWEKLIYDAGFSSYKITP  346 (358)
T ss_dssp             HHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence                 11112445678889999888765

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=85.97  E-value=0.89  Score=43.26  Aligned_cols=113  Identities=9%  Similarity=0.024  Sum_probs=69.2

Q ss_pred             cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccc---cCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSL---DSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSl---DSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      ....++.+||=||=|-=.||..|++. +   .|+|.-.   .+...+ . .-.    ++.+...+++++-++|++.+.  
T Consensus        78 ~~~~~g~~VLDlGcG~G~~s~~la~~-~---~V~gvD~~~~~~~~~~-~-~~~----~~~~~~~~v~~~~~~D~~~l~--  145 (305)
T 2p41_A           78 NLVTPEGKVVDLGCGRGGWSYYCGGL-K---NVREVKGLTKGGPGHE-E-PIP----MSTYGWNLVRLQSGVDVFFIP--  145 (305)
T ss_dssp             TSSCCCEEEEEETCTTSHHHHHHHTS-T---TEEEEEEECCCSTTSC-C-CCC----CCSTTGGGEEEECSCCTTTSC--
T ss_pred             CCCCCCCEEEEEcCCCCHHHHHHHhc-C---CEEEEeccccCchhHH-H-HHH----hhhcCCCCeEEEeccccccCC--
Confidence            34566789999998888888889876 2   5666322   111111 0 000    011111357777777888764  


Q ss_pred             CCcCCCCcceEEEcCCC-CCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441           96 PDLRTRKFDRIIFNFPH-AGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH-~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                          ..+||.|+-|.+. +|.   .     ...+...+ ..+..+..+|+|||.+.+....+
T Consensus       146 ----~~~fD~V~sd~~~~~g~---~-----~~d~~~~l-~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          146 ----PERCDTLLCDIGESSPN---P-----TVEAGRTL-RVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             ----CCCCSEEEECCCCCCSS---H-----HHHHHHHH-HHHHHHHHHCCTTCEEEEEESCC
T ss_pred             ----cCCCCEEEECCccccCc---c-----hhhHHHHH-HHHHHHHHHhCCCCEEEEEeCCC
Confidence                2479999999854 342   1     11222222 47788889999999888876655

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=84.39  E-value=0.63  Score=46.39  Aligned_cols=108  Identities=15%  Similarity=0.134  Sum_probs=69.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeccccCCCCC-CCCcC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG--TCILHGVDATTMEL-HPDLR   99 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G--v~VlfgVDATkL~~-~~~Lk   99 (389)
                      .+.+||=++=|.=.||+-+|+..+.+..|+|--.+  .+..+   .+++|++...-.+  ++ +..-||.++-. ..   
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~--~~av~---~~~~N~~~Ngl~~~~v~-v~~~Da~~~l~~~~---  122 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDIS--SKAIE---IMKENFKLNNIPEDRYE-IHGMEANFFLRKEW---  122 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSC--HHHHH---HHHHHHHHTTCCGGGEE-EECSCHHHHHHSCC---
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHhCCCCceEE-EEeCCHHHHHHHhh---
Confidence            36789888888888888888764323456655444  33322   3677877654223  44 44557766432 11   


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                      ..+||+|+.| | -|.                ...|+..|.++|+++|.|++|.-+..
T Consensus       123 ~~~fD~V~lD-P-~g~----------------~~~~l~~a~~~Lk~gGll~~t~t~~~  162 (392)
T 3axs_A          123 GFGFDYVDLD-P-FGT----------------PVPFIESVALSMKRGGILSLTATDTA  162 (392)
T ss_dssp             SSCEEEEEEC-C-SSC----------------CHHHHHHHHHHEEEEEEEEEEECCHH
T ss_pred             CCCCcEEEEC-C-CcC----------------HHHHHHHHHHHhCCCCEEEEEecchh
Confidence            3579999999 5 221                12588899999999999999985544

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=84.28  E-value=9.1  Score=35.24  Aligned_cols=124  Identities=11%  Similarity=0.106  Sum_probs=82.5

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCCcCC-
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPDLRT-  100 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~Lk~-  100 (389)
                      ++.+||=||=|.=..+.+||+.. ....++|+-.+. ..+ +   .|..|++...-.+ +.|..+ |+-.     .+.. 
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~-~al-~---~A~~N~~~~gl~~~i~~~~~-d~l~-----~l~~~   82 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVE-GPY-Q---SAVKNVEAHGLKEKIQVRLA-NGLA-----AFEET   82 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSH-HHH-H---HHHHHHHHTTCTTTEEEEEC-SGGG-----GCCGG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCH-HHH-H---HHHHHHHHcCCCceEEEEEC-chhh-----hcccC
Confidence            45789999999999999999863 344677766553 222 2   3677776543222 344333 4421     1222 


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWC  178 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~  178 (389)
                      ..||.|+..    |- |           .+++..++..+...|+++|.+.+.-.++.    -.+.+...+.||.+.+.
T Consensus        83 ~~~D~Ivia----G~-G-----------g~~i~~Il~~~~~~L~~~~~lVlq~~~~~----~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A           83 DQVSVITIA----GM-G-----------GRLIARILEEGLGKLANVERLILQPNNRE----DDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             GCCCEEEEE----EE-C-----------HHHHHHHHHHTGGGCTTCCEEEEEESSCH----HHHHHHHHHTTEEEEEE
T ss_pred             cCCCEEEEc----CC-C-----------hHHHHHHHHHHHHHhCCCCEEEEECCCCH----HHHHHHHHHCCCEEEEE
Confidence            269998862    32 2           24688999999999999999998877654    36666777889888764

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=84.11  E-value=1.8  Score=43.78  Aligned_cols=105  Identities=19%  Similarity=0.175  Sum_probs=66.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      .+..+||=||=|.=.++..|++. + ...|+|+-.+  + +.+   .|+++++...- ..++++ .-|+.++.    +. 
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s--~-~l~---~A~~~~~~~gl~~~v~~~-~~d~~~~~----~~-  222 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAS--T-MAQ---HAEVLVKSNNLTDRIVVI-PGKVEEVS----LP-  222 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECH--H-HHH---HHHHHHHHTTCTTTEEEE-ESCTTTCC----CS-
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcH--H-HHH---HHHHHHHHcCCCCcEEEE-ECchhhCc----cC-
Confidence            35679999999998899988874 3 4578887654  3 322   25666654321 124444 44666542    22 


Q ss_pred             CCcceEEEcCC-CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          101 RKFDRIIFNFP-HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       101 ~~FDrIIFNFP-H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      .+||.||.|.| +...            +.. +...+..+..+|+++|.+.++.
T Consensus       223 ~~fD~Ivs~~~~~~~~------------~e~-~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          223 EQVDIIISEPMGYMLF------------NER-MLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             SCEEEEECCCCHHHHT------------CHH-HHHHHHHGGGGEEEEEEEESCE
T ss_pred             CCeEEEEEeCchHhcC------------cHH-HHHHHHHHHHhcCCCCEEEEEe
Confidence            47999999977 2221            111 2345567889999999887554

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=84.04  E-value=3.3  Score=41.80  Aligned_cols=112  Identities=13%  Similarity=0.030  Sum_probs=63.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHH----hhhhHHHHHHHHH--hCCCEEEeccccCCCCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQ----KYKRAKSNLDNLK--KLGTCILHGVDATTMELH   95 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~----KY~~A~~Ni~~Lr--~~Gv~VlfgVDATkL~~~   95 (389)
                      .++++||=||=|.=++++.||+..+. ..+++.-.+.  ++.+    ....++.|++.+.  -..+.++.+ |+......
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~-~~V~GVDis~--~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g-D~~~~~~~  316 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMD--DASDLTILQYEELKKRCKLYGMRLNNVEFSLK-KSFVDNNR  316 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCH--HHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES-SCSTTCHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCC-CEEEEEeCCH--HHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc-Cccccccc
Confidence            46789999999999999999988753 3565554443  2222    1112344444332  123444443 22211000


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      .......||+|+.|....+    ++           +...++.+..+|++||.|.++
T Consensus       317 ~~~~~~~FDvIvvn~~l~~----~d-----------~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          317 VAELIPQCDVILVNNFLFD----ED-----------LNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             HHHHGGGCSEEEECCTTCC----HH-----------HHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccCCCCEEEEeCcccc----cc-----------HHHHHHHHHHhCCCCeEEEEe
Confidence            0001257999999854422    11           224556777899999999876

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=83.24  E-value=12  Score=35.81  Aligned_cols=128  Identities=21%  Similarity=0.231  Sum_probs=79.3

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ++...+||=||=|.=.++..|++.+.   ++..|.+|- .++.+.   +..      ..+++++ .-|+.+  .   +..
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~---a~~------~~~v~~~-~~d~~~--~---~p~  261 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYP---SINAINFDL-PHVIQD---APA------FSGVEHL-GGDMFD--G---VPK  261 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTT---CCC------CTTEEEE-ECCTTT--C---CCC
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCC---CCEEEEEeh-HHHHHh---hhh------cCCCEEE-ecCCCC--C---CCC
Confidence            55678999999999999999999873   344567776 444332   111      1234333 335543  1   112


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC--CC---------------------
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT--TV---------------------  157 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~--g~---------------------  157 (389)
                      .  |.|+..+-.-..   .|         +-...+++.+..+|+|+|.|.|.=..  ..                     
T Consensus       262 ~--D~v~~~~vlh~~---~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~  327 (368)
T 3reo_A          262 G--DAIFIKWICHDW---SD---------EHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYN  327 (368)
T ss_dssp             C--SEEEEESCGGGB---CH---------HHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred             C--CEEEEechhhcC---CH---------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhc
Confidence            2  999987653221   11         12347889999999999999885321  11                     


Q ss_pred             ----CCCcccHHHHHhhCCcEEEEEeeC
Q 016441          158 ----PFSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       158 ----PY~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                          .++.=+++++.+++||..++..+-
T Consensus       328 ~~g~~rt~~e~~~ll~~AGF~~v~~~~~  355 (368)
T 3reo_A          328 PGGKERTEKEFQALAMASGFRGFKVASC  355 (368)
T ss_dssp             SBCCCCCHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCccCCHHHHHHHHHHCCCeeeEEEEe
Confidence                111123567888899988887654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=82.56  E-value=1.6  Score=42.01  Aligned_cols=131  Identities=17%  Similarity=0.199  Sum_probs=77.3

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC--------
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH--------   95 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~--------   95 (389)
                      ..+||=+|=|.=.|+++||+.   ...|+|.-.+  .+..+   .|+.|++...-.++++ ..-||.++-..        
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~--~~ai~---~a~~n~~~ng~~~v~~-~~~d~~~~~~~~~~~~~~~  284 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN---FDRVLATEIA--KPSVA---AAQYNIAANHIDNVQI-IRMAAEEFTQAMNGVREFN  284 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG---SSEEEEECCC--HHHHH---HHHHHHHHTTCCSEEE-ECCCSHHHHHHHSSCCCCT
T ss_pred             CCEEEEccCCCCHHHHHHHhc---CCEEEEEECC--HHHHH---HHHHHHHHcCCCceEE-EECCHHHHHHHHhhccccc
Confidence            467988888888888888874   2467665444  33332   3667765422123343 34466553210        


Q ss_pred             ----CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhC
Q 016441           96 ----PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGS  171 (389)
Q Consensus        96 ----~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~a  171 (389)
                          ..+....||.||.|=|-.|.            .        ..+.++|+++|.|.+..|+..- -.-++..|..  
T Consensus       285 ~l~~~~~~~~~fD~Vv~dPPr~g~------------~--------~~~~~~l~~~g~ivyvsc~p~t-~ard~~~l~~--  341 (369)
T 3bt7_A          285 RLQGIDLKSYQCETIFVDPPRSGL------------D--------SETEKMVQAYPRILYISCNPET-LCKNLETLSQ--  341 (369)
T ss_dssp             TGGGSCGGGCCEEEEEECCCTTCC------------C--------HHHHHHHTTSSEEEEEESCHHH-HHHHHHHHHH--
T ss_pred             cccccccccCCCCEEEECcCcccc------------H--------HHHHHHHhCCCEEEEEECCHHH-HHHHHHHHhh--
Confidence                01112479999999998763            1        1233445578888877775321 1124445543  


Q ss_pred             CcEEEEEeeCCCCCCCC
Q 016441          172 SLSLIWCSEFKIEDYPA  188 (389)
Q Consensus       172 GL~L~~~~~F~~~~YPG  188 (389)
                      |+.+.+..+||  .||.
T Consensus       342 ~y~~~~~~~~D--~FP~  356 (369)
T 3bt7_A          342 THKVERLALFD--QFPY  356 (369)
T ss_dssp             HEEEEEEEEEC--CSTT
T ss_pred             CcEEEEEEeec--cCCC
Confidence            69999999998  4774

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=82.03  E-value=11  Score=35.57  Aligned_cols=127  Identities=14%  Similarity=0.179  Sum_probs=78.2

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ++...+||=||=|.=.++..|++.+. .  +-.|.+|- ..+.+.   +++      ..++++. .-|+.+  .   +. 
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~--~~~~~~D~-~~~~~~---a~~------~~~v~~~-~~d~~~--~---~p-  245 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFP-K--LKCIVFDR-PQVVEN---LSG------SNNLTYV-GGDMFT--S---IP-  245 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCT-T--CEEEEEEC-HHHHTT---CCC------BTTEEEE-ECCTTT--C---CC-
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCC-C--CeEEEeeC-HHHHhh---ccc------CCCcEEE-eccccC--C---CC-
Confidence            45678999999999999999999873 2  34566676 444432   211      1234433 335543  1   21 


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccC---CCeEEEEecC--CCC-----------------
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRD---GGEVHVSHKT--TVP-----------------  158 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~---~GeIHVTLk~--g~P-----------------  158 (389)
                       .||.|+.++----.   .|         .-...+++.+..+|+|   +|.+.|.-..  ..+                 
T Consensus       246 -~~D~v~~~~~lh~~---~d---------~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~  312 (352)
T 1fp2_A          246 -NADAVLLKYILHNW---TD---------KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMA  312 (352)
T ss_dssp             -CCSEEEEESCGGGS---CH---------HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGG
T ss_pred             -CccEEEeehhhccC---CH---------HHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHH
Confidence             29999998653221   11         1134788899999999   9998876321  111                 


Q ss_pred             ------CCcccHHHHHhhCCcEEEEEee
Q 016441          159 ------FSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       159 ------Y~sWnIe~LAa~aGL~L~~~~~  180 (389)
                            ++.=+++++.+++||..++..+
T Consensus       313 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~  340 (352)
T 1fp2_A          313 CLNGKERNEEEWKKLFIEAGFQHYKISP  340 (352)
T ss_dssp             GGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred             hccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence                  1111345677788888877655

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=81.62  E-value=0.81  Score=45.04  Aligned_cols=105  Identities=17%  Similarity=0.129  Sum_probs=69.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH--------------hC-CCEEEecc
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK--------------KL-GTCILHGV   87 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr--------------~~-Gv~VlfgV   87 (389)
                      .+.+||=+|=|.=.+++.+|+..+ +..|+|--.+  ++..+   -+++|++...              .. ++.| ..-
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~--~~av~---~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v-~~~  119 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDIS--EDAYE---LMKRNVMLNFDGELRESKGRAILKGEKTIVI-NHD  119 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESC--HHHHH---HHHHHHHHHCCSCCEECSSEEEEESSSEEEE-EES
T ss_pred             CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECC--HHHHH---HHHHHHHHhcccccccccccccccCCCceEE-EcC
Confidence            577899999999999999998764 3456665444  33322   3778888762              11 2333 344


Q ss_pred             ccCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441           88 DATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus        88 DATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      ||.++-...   ...||.|+.| | .|.                ...|+.+|..+|+++|.|+||..+
T Consensus       120 Da~~~~~~~---~~~fD~I~lD-P-~~~----------------~~~~l~~a~~~lk~gG~l~vt~td  166 (378)
T 2dul_A          120 DANRLMAER---HRYFHFIDLD-P-FGS----------------PMEFLDTALRSAKRRGILGVTATD  166 (378)
T ss_dssp             CHHHHHHHS---TTCEEEEEEC-C-SSC----------------CHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cHHHHHHhc---cCCCCEEEeC-C-CCC----------------HHHHHHHHHHhcCCCCEEEEEeec
Confidence            766542211   3579999966 4 232                137889999999999999998643

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=81.54  E-value=10  Score=35.45  Aligned_cols=125  Identities=14%  Similarity=0.142  Sum_probs=82.5

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ++.+||=||=|.=-.+.+||+. +....++|+-.+. ..+ +   .|+.|++...-.+ +.|.. -|+-..-.    ...
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~-~al-~---~A~~N~~~~gl~~~I~v~~-gD~l~~~~----~~~   89 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVD-GPF-Q---SAQKQVRSSGLTEQIDVRK-GNGLAVIE----KKD   89 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSH-HHH-H---HHHHHHHHTTCTTTEEEEE-CSGGGGCC----GGG
T ss_pred             CCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCH-HHH-H---HHHHHHHHcCCCceEEEEe-cchhhccC----ccc
Confidence            4578999999999999999986 3344677766653 222 2   3777776543222 33333 24333211    123


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWC  178 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~  178 (389)
                      .||.||.    +|- |           .+++..++..+...|+++|.+.+.-.++.+    .+.+...+.||.+.+.
T Consensus        90 ~~D~Ivi----agm-G-----------g~lI~~IL~~~~~~L~~~~~lIlq~~~~~~----~lr~~L~~~Gf~i~~E  146 (244)
T 3gnl_A           90 AIDTIVI----AGM-G-----------GTLIRTILEEGAAKLAGVTKLILQPNIAAW----QLREWSEQNNWLITSE  146 (244)
T ss_dssp             CCCEEEE----EEE-C-----------HHHHHHHHHHTGGGGTTCCEEEEEESSCHH----HHHHHHHHHTEEEEEE
T ss_pred             cccEEEE----eCC-c-----------hHHHHHHHHHHHHHhCCCCEEEEEcCCChH----HHHHHHHHCCCEEEEE
Confidence            6999886    442 2           257889999999999999999988776543    6666777788887653

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=80.83  E-value=22  Score=33.98  Aligned_cols=128  Identities=17%  Similarity=0.203  Sum_probs=78.7

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ++...+||=||=|.=.++..|++.+.   ++..|.+|- .++.+.   +..      ..+++++ .-|+.+ .    +..
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~---a~~------~~~v~~~-~~D~~~-~----~p~  259 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYP---TIKGVNFDL-PHVISE---APQ------FPGVTHV-GGDMFK-E----VPS  259 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTT---CCC------CTTEEEE-ECCTTT-C----CCC
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCC---CCeEEEecC-HHHHHh---hhh------cCCeEEE-eCCcCC-C----CCC
Confidence            56778999999999999999999873   345577776 334332   211      1233332 335554 1    112


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC--CC---------------------
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT--TV---------------------  157 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~--g~---------------------  157 (389)
                      .  |.|+..+---..   .         .+-...+++++...|+|+|.+.|.=..  ..                     
T Consensus       260 ~--D~v~~~~vlh~~---~---------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~  325 (364)
T 3p9c_A          260 G--DTILMKWILHDW---S---------DQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHN  325 (364)
T ss_dssp             C--SEEEEESCGGGS---C---------HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred             C--CEEEehHHhccC---C---------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcc
Confidence            2  999876532211   1         112457889999999999999885321  11                     


Q ss_pred             ----CCCcccHHHHHhhCCcEEEEEeeC
Q 016441          158 ----PFSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       158 ----PY~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                          .++.=+++++.+++||..++..+.
T Consensus       326 ~~g~~rt~~e~~~ll~~AGF~~v~~~~~  353 (364)
T 3p9c_A          326 PGGRERYEREFQALARGAGFTGVKSTYI  353 (364)
T ss_dssp             SSCCCCBHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cCCccCCHHHHHHHHHHCCCceEEEEEc
Confidence                111113567888899998887654

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=80.73  E-value=4.1  Score=40.34  Aligned_cols=109  Identities=23%  Similarity=0.338  Sum_probs=67.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ++++||=||-|-=-.|+-.|++ | +..|+|--...   +.+   .|+.+++.-.-.+ ++|+.+ |++.+..     ..
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~a-G-A~~V~ave~s~---~~~---~a~~~~~~n~~~~~i~~i~~-~~~~~~l-----pe  148 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQA-G-ARRVYAVEASA---IWQ---QAREVVRFNGLEDRVHVLPG-PVETVEL-----PE  148 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST---THH---HHHHHHHHTTCTTTEEEEES-CTTTCCC-----SS
T ss_pred             CCCEEEEeCCCccHHHHHHHHh-C-CCEEEEEeChH---HHH---HHHHHHHHcCCCceEEEEee-eeeeecC-----Cc
Confidence            4678999999987666655554 3 56788876542   222   2555554332222 555554 7776642     26


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCe-------EEEEecCC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGE-------VHVSHKTT  156 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~Ge-------IHVTLk~g  156 (389)
                      +||.||-+-=..+..           +..++..++.....+|+|+|.       +++...+.
T Consensus       149 ~~DvivsE~~~~~l~-----------~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~apie~  199 (376)
T 4hc4_A          149 QVDAIVSEWMGYGLL-----------HESMLSSVLHARTKWLKEGGLLLPASAELFIVPISD  199 (376)
T ss_dssp             CEEEEECCCCBTTBT-----------TTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred             cccEEEeeccccccc-----------ccchhhhHHHHHHhhCCCCceECCccceEEEEEecc
Confidence            799999875444431           223466777778889999874       55665554

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=80.66  E-value=1.6  Score=38.35  Aligned_cols=80  Identities=16%  Similarity=0.031  Sum_probs=52.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ....+||=+|=|.=.++..|++.   +..|+|.-++  +++.+   .++.|++...- ..+. +..-|+.++.     ..
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~-~~~~d~~~~~-----~~  142 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDID--PVKIA---LARNNAEVYGIADKIE-FICGDFLLLA-----SF  142 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHHHHTTCGGGEE-EEESCHHHHG-----GG
T ss_pred             cCCCEEEECccccCHHHHHHHHc---CCEEEEEECC--HHHHH---HHHHHHHHcCCCcCeE-EEECChHHhc-----cc
Confidence            36789999999999999999985   2566665544  33333   25556544321 1233 3445777654     24


Q ss_pred             CCcceEEEcCCCCCC
Q 016441          101 RKFDRIIFNFPHAGF  115 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~  115 (389)
                      ..||.|+.|.|..+.
T Consensus       143 ~~~D~v~~~~~~~~~  157 (241)
T 3gdh_A          143 LKADVVFLSPPWGGP  157 (241)
T ss_dssp             CCCSEEEECCCCSSG
T ss_pred             CCCCEEEECCCcCCc
Confidence            689999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	389
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.0
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.78
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.49
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.47
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.18
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.1
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	96.77
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	96.74
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.72
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	96.72
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.57
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	96.57
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	96.44
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	96.41
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	96.25
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	96.16
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	95.62
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	95.55
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.47
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	95.44
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.4
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	95.35
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	95.33
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	95.3
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	95.21
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	95.12
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.06
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	95.06
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	95.03
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	95.0
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	94.96
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	94.73
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.7
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	94.61
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.53
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	94.18
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	94.16
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	94.05
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	94.0
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	93.88
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	93.84
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	93.75
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	93.7
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	93.66
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	93.14
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	93.09
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	93.08
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	92.84
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	91.63
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	90.53
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	90.48
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	90.4
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	90.29
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	90.17
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	90.0
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	89.01
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	88.92
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	88.68
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	88.59
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	88.31
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.18
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	88.0
d2h00a1	250	Methyltransferase 10 domain containing protein MET	86.17
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	85.16
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	84.41
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	83.0

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.00  E-value=1.4e-05  Score=70.81  Aligned_cols=150  Identities=17%  Similarity=0.229  Sum_probs=103.4

Q ss_pred             hhhhccccccCCCCCC-eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccc
Q 016441           10 CEEKEEKWIKHYSSNH-QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVD   88 (389)
Q Consensus        10 ~~~~~~K~~~~Yss~~-rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVD   88 (389)
                      .++...+|-..|.... .||=||=|+=.|...||+.+ +..++|+--.. ...+ .   .|.+.+..+.-.++.+++ .|
T Consensus        17 p~~~~~~w~~~f~~~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~-~~~v-~---~a~~~~~~~~l~Ni~~~~-~d   89 (204)
T d1yzha1          17 PLEAKAKWRDLFGNDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQ-KSVL-S---YALDKVLEVGVPNIKLLW-VD   89 (204)
T ss_dssp             GGGTTTTHHHHHTSCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESC-HHHH-H---HHHHHHHHHCCSSEEEEE-CC
T ss_pred             hHHhhccHHHHcCCCCCeEEEEeccCCHHHHHHHHHC-CCCceEEEecc-HHHH-H---HHHHhhhhhccccceeee-cC
Confidence            3455678998887644 48999999999999999987 45688885443 3322 2   244555555444566665 58


Q ss_pred             cCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHH
Q 016441           89 ATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELA  168 (389)
Q Consensus        89 ATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LA  168 (389)
                      |..|...  +....+|.|+.|||..-.+.+.      ++.|-+-..||.....+|++||.++++. +-+.|-.|-++.+.
T Consensus        90 a~~l~~~--~~~~~~~~i~i~fPdPw~K~~h------~krRl~~~~~l~~~~~~LkpgG~l~i~T-D~~~Y~~~~le~~~  160 (204)
T d1yzha1          90 GSDLTDY--FEDGEIDRLYLNFSDPWPKKRH------EKRRLTYKTFLDTFKRILPENGEIHFKT-DNRGLFEYSLVSFS  160 (204)
T ss_dssp             SSCGGGT--SCTTCCSEEEEESCCCCCSGGG------GGGSTTSHHHHHHHHHHSCTTCEEEEEE-SCHHHHHHHHHHHH
T ss_pred             HHHHhhh--ccCCceehhcccccccccchhh------hhhhhhHHHHHHHHHHhCCCCcEEEEEE-CCccHHHHHHHHHH
Confidence            9888643  4567899999999988753221      1233344789999999999999999865 33457778777766


Q ss_pred             hhCCcEEE
Q 016441          169 IGSSLSLI  176 (389)
Q Consensus       169 a~aGL~L~  176 (389)
                      +. ++...
T Consensus       161 ~~-~~~~~  167 (204)
T d1yzha1         161 QY-GMKLN  167 (204)
T ss_dssp             HH-TCEEE
T ss_pred             HC-Ccccc
Confidence            54 55443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.78  E-value=1.7e-05  Score=70.20  Aligned_cols=159  Identities=16%  Similarity=0.226  Sum_probs=104.4

Q ss_pred             ccccccCCCCCC-eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCC
Q 016441           14 EEKWIKHYSSNH-QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTM   92 (389)
Q Consensus        14 ~~K~~~~Yss~~-rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL   92 (389)
                      ..+|-..|.... .||=||=|+=-|+..||+.+ ...++++--..  .....   .+..+++...-.++.+ ...||+.|
T Consensus        19 ~~~w~~~F~~~~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~--~~~i~---~a~~~~~~~~l~Nv~~-~~~Da~~l   91 (204)
T d2fcaa1          19 KGKWNTVFGNDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELF--KSVIV---TAVQKVKDSEAQNVKL-LNIDADTL   91 (204)
T ss_dssp             TTCHHHHHTSCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSC--HHHHH---HHHHHHHHSCCSSEEE-ECCCGGGH
T ss_pred             HhHHHHHcCCCCceEEEEEecCcHHHHHHHHhC-CCCcEEEeecc--hHHHH---HHHHHHHHHhccCchh-cccchhhh
Confidence            446777777655 47999999999999999987 45677764433  22222   1333443333233544 45689887


Q ss_pred             CCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCC
Q 016441           93 ELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSS  172 (389)
Q Consensus        93 ~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aG  172 (389)
                      ..  .+....+|.|..+||-.-.+.+.      .++|-+-..|+..+..+|+|||.|+|+. +-.+|-.|-++.+.+...
T Consensus        92 ~~--~~~~~~~d~v~i~fp~P~~k~~h------~k~Rl~~~~~l~~~~r~LkpgG~l~i~T-D~~~y~~~~~~~~~~~~~  162 (204)
T d2fcaa1          92 TD--VFEPGEVKRVYLNFSDPWPKKRH------EKRRLTYSHFLKKYEEVMGKGGSIHFKT-DNRGLFEYSLKSFSEYGL  162 (204)
T ss_dssp             HH--HCCTTSCCEEEEESCCCCCSGGG------GGGSTTSHHHHHHHHHHHTTSCEEEEEE-SCHHHHHHHHHHHHHHTC
T ss_pred             hc--ccCchhhhccccccccccchhhh------cchhhhHHHHHHHHHHhCCCCcEEEEEE-CChHHHHHHHHHHHHCCC
Confidence            53  24567899999999987753221      1233344689999999999999999974 555688998888888766


Q ss_pred             cEEEEEeeCCCCCCCC
Q 016441          173 LSLIWCSEFKIEDYPA  188 (389)
Q Consensus       173 L~L~~~~~F~~~~YPG  188 (389)
                      +............+++
T Consensus       163 ~~~~~~~d~~~~~~~~  178 (204)
T d2fcaa1         163 LLTYVSLDLHNSNLEG  178 (204)
T ss_dssp             EEEEEESSGGGSSCTT
T ss_pred             ccccCChhhcccCCCC
Confidence            5444444433333433

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.49  E-value=0.0001  Score=62.92  Aligned_cols=132  Identities=19%  Similarity=0.231  Sum_probs=84.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~Lk~  100 (389)
                      .+..+||=||=|.=.+|.+||+..   .+++++-++ ...+.    .++.|++...-.+..|- ..-|+.+     .+..
T Consensus        51 ~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s-~~~i~----~a~~n~~~~~l~~~~i~~~~~d~~~-----~~~~  117 (194)
T d1dusa_          51 DKDDDILDLGCGYGVIGIALADEV---KSTTMADIN-RRAIK----LAKENIKLNNLDNYDIRVVHSDLYE-----NVKD  117 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESC-HHHHH----HHHHHHHHTTCTTSCEEEEECSTTT-----TCTT
T ss_pred             CCCCeEEEEeecCChhHHHHHhhc---cccceeeec-cccch----hHHHHHHHhCCccceEEEEEcchhh-----hhcc
Confidence            356789999999999999998753   478887655 33332    36677765433333232 2234432     2345


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCC---------cccHHHHHhhC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFS---------NWNIKELAIGS  171 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~---------sWnIe~LAa~a  171 (389)
                      ..||.|+.|.|.-..             .+.+..|++.+..+|+++|.+.|.+....++.         -|+++.++...
T Consensus       118 ~~fD~Ii~~~p~~~~-------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~  184 (194)
T d1dusa_         118 RKYNKIITNPPIRAG-------------KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKG  184 (194)
T ss_dssp             SCEEEEEECCCSTTC-------------HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEET
T ss_pred             CCceEEEEcccEEec-------------chhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEecC
Confidence            789999999995331             22456789999999999999988665443221         12344455566


Q ss_pred             CcEEEEEe
Q 016441          172 SLSLIWCS  179 (389)
Q Consensus       172 GL~L~~~~  179 (389)
                      |++++++.
T Consensus       185 gf~vl~a~  192 (194)
T d1dusa_         185 GYRVLKSK  192 (194)
T ss_dssp             TEEEEEEE
T ss_pred             CcEEEEEE
Confidence            67666543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.47  E-value=4.4e-05  Score=71.33  Aligned_cols=164  Identities=15%  Similarity=0.080  Sum_probs=99.6

Q ss_pred             hhccccccCC-CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEecccc
Q 016441           12 EKEEKWIKHY-SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDA   89 (389)
Q Consensus        12 ~~~~K~~~~Y-ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDA   89 (389)
                      ....+|+..+ +++.+||=+|-|.=.||.++|+. | +..|++.-.+  ++..+   .++.|++...-.. +. ...-|+
T Consensus       133 r~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~-g-a~~V~~vD~s--~~al~---~a~~N~~~ngl~~~~~-~~~~d~  204 (324)
T d2as0a2         133 RENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKS--PRAIE---TAKENAKLNGVEDRMK-FIVGSA  204 (324)
T ss_dssp             HHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESC--HHHHH---HHHHHHHHTTCGGGEE-EEESCH
T ss_pred             hhHHHHHHhhcCCCCeeecccCcccchhhhhhhc-C-CcEEEeecCC--HHHHH---HHHHHHHHcCCCccce-eeechh
Confidence            3445666665 45889999999999999988865 3 4456554443  33332   3666765532111 22 334455


Q ss_pred             CCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-CCcc--cHHH
Q 016441           90 TTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-FSNW--NIKE  166 (389)
Q Consensus        90 TkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sW--nIe~  166 (389)
                      .+.-....-++.+||+||.|-|..+. ++.+    ...-......++..|.++|+|||.+..+.|...= ...|  .|.+
T Consensus       205 ~~~~~~~~~~~~~fD~Vi~DpP~~~~-~~~~----~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~  279 (324)
T d2as0a2         205 FEEMEKLQKKGEKFDIVVLDPPAFVQ-HEKD----LKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIA  279 (324)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCSCS-SGGG----HHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             hhhhHHHHhccCCCCchhcCCccccC-CHHH----HHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHH
Confidence            43221111245789999999999885 4333    2223334566778899999999999998887631 1222  2234


Q ss_pred             HHhhCCcEEE--EEeeCCCCCCCC
Q 016441          167 LAIGSSLSLI--WCSEFKIEDYPA  188 (389)
Q Consensus       167 LAa~aGL~L~--~~~~F~~~~YPG  188 (389)
                      .+.++|-.+.  +.....+.|+|-
T Consensus       280 a~~~~gr~~~~~~~~~~~~~DhP~  303 (324)
T d2as0a2         280 AGAKAGKFLKMLEPYRTQAPDHPI  303 (324)
T ss_dssp             HHHHTTEEEEESSCBBCSCTTSCC
T ss_pred             HHHHcCCeEEEeeecCCCCCCCCC
Confidence            4566774444  444557778873

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.18  E-value=0.00066  Score=61.72  Aligned_cols=129  Identities=16%  Similarity=0.157  Sum_probs=89.5

Q ss_pred             ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC
Q 016441           18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD   97 (389)
Q Consensus        18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~   97 (389)
                      .....++.+||=+|=|-=+||+.+|+. + +..|+|.-.+.. .+    .-+++|++..+=.+....+.-||.++..   
T Consensus       102 ~~~~~~g~~VlD~~aG~G~~~l~~a~~-~-~~~V~avd~n~~-a~----~~~~~N~~~n~l~~~v~~~~~D~~~~~~---  171 (260)
T d2frna1         102 AKVAKPDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDPY-TF----KFLVENIHLNKVEDRMSAYNMDNRDFPG---  171 (260)
T ss_dssp             HHHCCTTCEEEETTCTTTTTHHHHHHH-T-CCEEEEECCCHH-HH----HHHHHHHHHTTCTTTEEEECSCTTTCCC---
T ss_pred             HhhcCCccEEEECcceEcHHHHHHHHh-C-CcEEEEecCCHH-HH----HHHHHHHHHhCCCceEEEEEcchHHhcc---
Confidence            344567899999999888999988875 3 457888777642 22    2367787765444534445669988643   


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec-CCCCCCcccHH---HHHhhCCc
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK-TTVPFSNWNIK---ELAIGSSL  173 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk-~g~PY~sWnIe---~LAa~aGL  173 (389)
                        ...||+||.|-|+.+.                  .|+..|..+|++||-||+... ..+-...|..+   ++++..|+
T Consensus       172 --~~~~D~Ii~~~p~~~~------------------~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~  231 (260)
T d2frna1         172 --ENIADRILMGYVVRTH------------------EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY  231 (260)
T ss_dssp             --CSCEEEEEECCCSSGG------------------GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred             --CCCCCEEEECCCCchH------------------HHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence              3679999999997542                  466778889999999998643 22223455544   47888888


Q ss_pred             EEE
Q 016441          174 SLI  176 (389)
Q Consensus       174 ~L~  176 (389)
                      .+.
T Consensus       232 ~v~  234 (260)
T d2frna1         232 DVE  234 (260)
T ss_dssp             EEE
T ss_pred             ceE
Confidence            764

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.10  E-value=0.0002  Score=66.76  Aligned_cols=158  Identities=18%  Similarity=0.186  Sum_probs=94.9

Q ss_pred             ccccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCC
Q 016441           14 EEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTME   93 (389)
Q Consensus        14 ~~K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~   93 (389)
                      ...|+... ++++||=++-|-=+||.++|+.   +..|+|  .|..+...+   .+++|++...-.+++ ....|+.+..
T Consensus       137 ~r~~~~~~-~g~rVLDl~~gtG~~s~~~a~g---~~~V~~--vD~s~~al~---~a~~n~~~ngl~~~~-~i~~d~~~~~  206 (318)
T d1wxxa2         137 NRLYMERF-RGERALDVFSYAGGFALHLALG---FREVVA--VDSSAEALR---RAEENARLNGLGNVR-VLEANAFDLL  206 (318)
T ss_dssp             HHHHGGGC-CEEEEEEETCTTTHHHHHHHHH---EEEEEE--EESCHHHHH---HHHHHHHHTTCTTEE-EEESCHHHHH
T ss_pred             hHHHHHHh-CCCeeeccCCCCcHHHHHHHhc---CCcEEe--ecchHHHHH---HHHHHHHHcCCCCcc-eeeccHHHHh
Confidence            34555544 6789999988888888888753   345654  554444443   367776653211233 3455665533


Q ss_pred             CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-CCcc--cHHHHHhh
Q 016441           94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-FSNW--NIKELAIG  170 (389)
Q Consensus        94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sW--nIe~LAa~  170 (389)
                      +...-...+||.||.|-|-.+. ++.+.    ..-.......+..|..+|+|||.|..+.|...- ...|  -|.+.+.+
T Consensus       207 ~~~~~~~~~fD~Vi~DpP~~~~-~~~~~----~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~  281 (318)
T d1wxxa2         207 RRLEKEGERFDLVVLDPPAFAK-GKKDV----ERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQD  281 (318)
T ss_dssp             HHHHHTTCCEEEEEECCCCSCC-STTSH----HHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             hhhHhhhcCCCEEEEcCCcccc-chHHH----HHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHH
Confidence            2222235789999999999884 55442    223334456677899999999999998886531 1122  23344555


Q ss_pred             CC--cEEEEEeeCCCCCCC
Q 016441          171 SS--LSLIWCSEFKIEDYP  187 (389)
Q Consensus       171 aG--L~L~~~~~F~~~~YP  187 (389)
                      +|  +.++.. .-.+.|+|
T Consensus       282 a~~~~~~~~~-~~~~~DhP  299 (318)
T d1wxxa2         282 AHRLLRVVEK-RGQPFDHP  299 (318)
T ss_dssp             TTCCEEEEEE-ECCCTTSC
T ss_pred             cCCCEEEEEe-cCCCCCCC
Confidence            65  455543 23455565

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0013  Score=56.58  Aligned_cols=135  Identities=18%  Similarity=0.205  Sum_probs=87.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .+..+||=||=|.=.++..|++..  +..|++  .|-.+++.+.   |++++.......+ -.+..|++++.    +...
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~--vD~s~~~l~~---ak~~~~~~~~~~~-~f~~~d~~~~~----~~~~  126 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPL--FREVDM--VDITEDFLVQ---AKTYLGEEGKRVR-NYFCCGLQDFT----PEPD  126 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTT--CSEEEE--EESCHHHHHH---HHHHTGGGGGGEE-EEEECCGGGCC----CCSS
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhc--CCEEEE--eecCHHHhhc---ccccccccccccc-ccccccccccc----cccc
Confidence            456789999999999999887654  235554  5644444432   4444433222222 34566888875    3458


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec---CCCC---------CCcccHHHHHh
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK---TTVP---------FSNWNIKELAI  169 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk---~g~P---------Y~sWnIe~LAa  169 (389)
                      .||.|+.++= +..           ....-+..+|+.+..+|+++|.|.|+-.   ++..         ++...+.++.+
T Consensus       127 ~fD~I~~~~~-l~h-----------~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  194 (222)
T d2ex4a1         127 SYDVIWIQWV-IGH-----------LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIIC  194 (222)
T ss_dssp             CEEEEEEESC-GGG-----------SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHH
T ss_pred             cccccccccc-ccc-----------chhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHH
Confidence            8999998752 211           0112256789999999999999998732   2211         23455778999


Q ss_pred             hCCcEEEEEee
Q 016441          170 GSSLSLIWCSE  180 (389)
Q Consensus       170 ~aGL~L~~~~~  180 (389)
                      ++||.+++...
T Consensus       195 ~aGf~ii~~~~  205 (222)
T d2ex4a1         195 SAGLSLLAEER  205 (222)
T ss_dssp             HTTCCEEEEEE
T ss_pred             HcCCEEEEEEE
Confidence            99999887643

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=96.74  E-value=0.0098  Score=52.84  Aligned_cols=143  Identities=16%  Similarity=0.168  Sum_probs=93.2

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      .++...+||=||=|.=.++..|++++.   ++.+|.+|-.+.+ +   .+++++....-........-|..+  .   + 
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P---~~~~~~~Dlp~~~-~---~a~~~~~~~~~~~ri~~~~~d~~~--~---~-  144 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAP---HLRGTLVELAGPA-E---RARRRFADAGLADRVTVAEGDFFK--P---L-  144 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCT---TCEEEEEECHHHH-H---HHHHHHHHTTCTTTEEEEECCTTS--C---C-
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhc---CcEEEEecChHHH-H---HHHHHHhhcCCcceeeeeeeeccc--c---c-
Confidence            367788999999999999999999973   5677788965433 2   255666544333323333334432  1   1 


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec------------------------C
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK------------------------T  155 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk------------------------~  155 (389)
                      ...||.|++.+=--.. .           .+=...+++++.+.|+|+|.+.|.=.                        .
T Consensus       145 p~~~D~v~~~~vLh~~-~-----------d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~  212 (256)
T d1qzza2         145 PVTADVVLLSFVLLNW-S-----------DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMG  212 (256)
T ss_dssp             SCCEEEEEEESCGGGS-C-----------HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHS
T ss_pred             cccchhhhcccccccc-C-----------cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCC
Confidence            2459999887531111 1           11134678889999999999988632                        1


Q ss_pred             CCCCCcccHHHHHhhCCcEEEEEeeCCCCCCC
Q 016441          156 TVPFSNWNIKELAIGSSLSLIWCSEFKIEDYP  187 (389)
Q Consensus       156 g~PY~sWnIe~LAa~aGL~L~~~~~F~~~~YP  187 (389)
                      |.+++.=++.++.+++||++++..++.....|
T Consensus       213 g~~rt~~e~~~ll~~AGf~~~~~~~~~~~~~~  244 (256)
T d1qzza2         213 GRVRTRDEVVDLAGSAGLALASERTSGSTTLP  244 (256)
T ss_dssp             CCCCCHHHHHHHHHTTTEEEEEEEEECCSSCS
T ss_pred             CccCCHHHHHHHHHHCCCceeEEEEeCCcCcc
Confidence            12222224567999999999999888776655

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.72  E-value=0.0091  Score=53.07  Aligned_cols=138  Identities=13%  Similarity=0.069  Sum_probs=94.6

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      +..++++||=+|=|.=.++..||+..|..-.|+|.-+..  .+.+   .+..   ..++.+..+..-.|+........ .
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~--~~l~---~a~~---~a~~~~~~~~i~~d~~~~~~~~~-~  140 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP--RVLR---ELVP---IVEERRNIVPILGDATKPEEYRA-L  140 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH--HHHH---HHHH---HHSSCTTEEEEECCTTCGGGGTT-T
T ss_pred             ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcH--HHHH---HHHH---HHHhcCCceEEEEECCCcccccc-c
Confidence            467899999999999999999999988766888876552  2222   2333   34456655555567776655432 2


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC---CCccc----HHHHHhhCC
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP---FSNWN----IKELAIGSS  172 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P---Y~sWn----Ie~LAa~aG  172 (389)
                      ...+|.|..++||...                ...|+.+|..+|+++|.+.|+++....   -....    ++++. +.|
T Consensus       141 ~~~vD~i~~d~~~~~~----------------~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~-~~g  203 (227)
T d1g8aa_         141 VPKVDVIFEDVAQPTQ----------------AKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY  203 (227)
T ss_dssp             CCCEEEEEECCCSTTH----------------HHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT
T ss_pred             ccceEEEEEEccccch----------------HHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHH-HcC
Confidence            3679999999999862                235789999999999999998864311   11122    23332 459


Q ss_pred             cEEEEEeeCCC
Q 016441          173 LSLIWCSEFKI  183 (389)
Q Consensus       173 L~L~~~~~F~~  183 (389)
                      |.+++.+...+
T Consensus       204 f~iie~i~L~p  214 (227)
T d1g8aa_         204 FEVIERLNLEP  214 (227)
T ss_dssp             SEEEEEEECTT
T ss_pred             CEEEEEEcCCC
Confidence            99998876543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.72  E-value=0.0078  Score=55.31  Aligned_cols=142  Identities=15%  Similarity=0.115  Sum_probs=89.4

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      .-.++++||=||=|-=+++.-+|+.+|  .++|+.+... +++.    .+.+.++   +.|....-.++.....    ..
T Consensus        58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~-~q~~----~a~~~~~---~~~l~~~v~~~~~d~~----~~  123 (291)
T d1kpia_          58 NLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSE-NQYA----HDKAMFD---EVDSPRRKEVRIQGWE----EF  123 (291)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCH-HHHH----HHHHHHH---HSCCSSCEEEEECCGG----GC
T ss_pred             CCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchH-HHHH----HHHHHHH---hhccchhhhhhhhccc----cc
Confidence            357899999999999999999999885  4777666653 3221    2333333   3332222222222221    22


Q ss_pred             CCCcceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC---C---------CC-------
Q 016441          100 TRKFDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT---T---------VP-------  158 (389)
Q Consensus       100 ~~~FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~---g---------~P-------  158 (389)
                      ..+||+|+..  |-|+|-+...       ...+=...||+.+..+|+|||.+.|....   .         .|       
T Consensus       124 ~~~fD~i~sie~~eH~~~~~~~-------~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~  196 (291)
T d1kpia_         124 DEPVDRIVSLGAFEHFADGAGD-------AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFI  196 (291)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSC-------CSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHH
T ss_pred             ccccceEeechhHHhcchhhhh-------hHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccc
Confidence            4679999854  8899843221       11222568999999999999988775321   0         11       


Q ss_pred             -------------CCcccHHHHHhhCCcEEEEEeeCC
Q 016441          159 -------------FSNWNIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       159 -------------Y~sWnIe~LAa~aGL~L~~~~~F~  182 (389)
                                   -+.-.+..+++++||.+.....+.
T Consensus       197 ~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~~~  233 (291)
T d1kpia_         197 KFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIG  233 (291)
T ss_dssp             HHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             hHHHHHhcCCCCCCCHHHHHhhhcccccccceeeecc
Confidence                         022345667888999999887764

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.57  E-value=0.0066  Score=50.49  Aligned_cols=108  Identities=18%  Similarity=0.245  Sum_probs=71.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=||=|.=.++..|++.   +.+|+|+  |-.+++.+.   |+++..... ..+..+. -|+++|.    +...
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~gi--D~S~~~i~~---ak~~~~~~~-~~~~~~~-~d~~~l~----~~~~  101 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGV--DISEDMIRK---AREYAKSRE-SNVEFIV-GDARKLS----FEDK  101 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT---TCEEEEE--ESCHHHHHH---HHHHHHHTT-CCCEEEE-CCTTSCC----SCTT
T ss_pred             CCCCEEEEECCCcchhhhhHhhh---hcccccc--cccccchhh---hhhhhcccc-ccccccc-ccccccc----ccCc
Confidence            46789999999999999999974   3467665  533444432   444443322 2345444 4888875    4557


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      .||.|+.++   ..   +-    + ...+ +..+|+++..+|+|||.+.|+..+
T Consensus       102 ~fD~I~~~~---~l---~~----~-~~~d-~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         102 TFDYVIFID---SI---VH----F-EPLE-LNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             CEEEEEEES---CG---GG----C-CHHH-HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CceEEEEec---ch---hh----C-ChhH-HHHHHHHHHHHcCcCcEEEEEEcC
Confidence            899999874   11   00    0 0122 557899999999999999887654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=96.57  E-value=0.0023  Score=59.70  Aligned_cols=158  Identities=15%  Similarity=0.113  Sum_probs=91.6

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-C-EEEeccccCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-T-CILHGVDATTME   93 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v-~VlfgVDATkL~   93 (389)
                      .++..++++++||=+.=|-=.||++++..  .+..+++.-.+. ..+ +   .++.|++. ...+ . .-...-||-+.-
T Consensus       137 ~l~~~~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~-~a~-~---~a~~N~~~-n~l~~~~~~~i~~d~~~~l  208 (317)
T d2b78a2         137 ELINGSAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAK-RSR-A---LSLAHFEA-NHLDMANHQLVVMDVFDYF  208 (317)
T ss_dssp             HHHHTTTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCT-THH-H---HHHHHHHH-TTCCCTTEEEEESCHHHHH
T ss_pred             HHHHHhhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCH-HHH-H---HHHHHHHH-hcccCcceEEEEccHHHHH
Confidence            45688999999987776666677766652  344566654432 222 1   35667642 2222 1 223445553321


Q ss_pred             CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-CCc--ccHHHHHhh
Q 016441           94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-FSN--WNIKELAIG  170 (389)
Q Consensus        94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~s--WnIe~LAa~  170 (389)
                      +...-++.+||.||.|=|-.+. ++++.....+.+++|    ++.|.++|+|||.+.++.|...- .+.  ..|.+.+.+
T Consensus       209 ~~~~~~~~~fD~Ii~DPP~f~~-~~~~~~~~~~~~~~L----~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~  283 (317)
T d2b78a2         209 KYARRHHLTYDIIIIDPPSFAR-NKKEVFSVSKDYHKL----IRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGK  283 (317)
T ss_dssp             HHHHHTTCCEEEEEECCCCC------CCCCHHHHHHHH----HHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             HHHHhhcCCCCEEEEcChhhcc-chhHHHHHHHHHHHH----HHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHH
Confidence            1111235789999999997763 444433444455544    56788999999999999887531 111  234556677


Q ss_pred             CCcEEEEEeeCCCCCCC
Q 016441          171 SSLSLIWCSEFKIEDYP  187 (389)
Q Consensus       171 aGL~L~~~~~F~~~~YP  187 (389)
                      .+..+..... .+.|||
T Consensus       284 ~~~~~~~~~~-~~~DfP  299 (317)
T d2b78a2         284 QKHTYLDLQQ-LPSDFA  299 (317)
T ss_dssp             CCCEEEEEEC-CCTTSC
T ss_pred             cCCeEEEecc-CCCCCC
Confidence            7887776543 455676

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=96.44  E-value=0.0091  Score=52.08  Aligned_cols=111  Identities=17%  Similarity=0.111  Sum_probs=70.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~Lk~~  101 (389)
                      ++.+||=||=|.=.++..+++.-  ..+++++=.. ++.+.    .|.+....++. +..| .+..|+......   ...
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S-~~~l~----~A~~r~~~~~~-~~~v~f~~~D~~~~~~~---~~~   92 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIA-EVSIN----DARVRARNMKR-RFKVFFRAQDSYGRHMD---LGK   92 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESC-HHHHH----HHHHHHHTSCC-SSEEEEEESCTTTSCCC---CSS
T ss_pred             CcCEEEEecccCcHHHHHHHHcC--CCeEEEecCC-HHHHH----HHHHHHHhcCC-CcceEEEEcchhhhccc---ccc
Confidence            56789999988888888888752  3467655443 33332    24444333332 2344 345677654322   356


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      .||.|+.+|=---          +-.+.+-+..+|+++..+|+|||.+.+|..
T Consensus        93 ~fD~V~~~~~l~~----------~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_          93 EFDVISSQFSFHY----------AFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             CEEEEEEESCGGG----------GGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cceEEEEcceeee----------cCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            8999998872111          112455678999999999999999988753

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=96.41  E-value=0.013  Score=51.94  Aligned_cols=140  Identities=15%  Similarity=0.154  Sum_probs=89.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ....+||=||=|.=.+|+.|+..+.  .+|++.  |..+.+.++   |+++   ++..+..-.+..|+.++.    +...
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~v--D~s~~~l~~---a~~~---~~~~~~~~~~~~d~~~~~----~~~~  157 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLL--EPVKHMLEE---AKRE---LAGMPVGKFILASMETAT----LPPN  157 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEE--ESCHHHHHH---HHHH---TTTSSEEEEEESCGGGCC----CCSS
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC--ceEEEE--cCCHHHHHh---hhcc---ccccccceeEEccccccc----cCCC
Confidence            3566899999999999999887653  355554  644444443   3332   223333223456776653    3467


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec--CCC-C----------CCcccHHHHH
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK--TTV-P----------FSNWNIKELA  168 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk--~g~-P----------Y~sWnIe~LA  168 (389)
                      .||.|+.+..-.-.   .         ..-+..||+.|..+|+++|.|.|.-.  ... +          ++.-.++++.
T Consensus       158 ~fD~I~~~~vl~hl---~---------d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~  225 (254)
T d1xtpa_         158 TYDLIVIQWTAIYL---T---------DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLF  225 (254)
T ss_dssp             CEEEEEEESCGGGS---C---------HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHH
T ss_pred             ccceEEeecccccc---c---------hhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHH
Confidence            89999998753211   1         11256899999999999999988642  211 0          1123578899


Q ss_pred             hhCCcEEEEEee---CCCCCCC
Q 016441          169 IGSSLSLIWCSE---FKIEDYP  187 (389)
Q Consensus       169 a~aGL~L~~~~~---F~~~~YP  187 (389)
                      +++||.+++...   |..+.||
T Consensus       226 ~~aGf~ii~~~~q~~fP~~l~~  247 (254)
T d1xtpa_         226 NESGVRVVKEAFQEEWPTDLFP  247 (254)
T ss_dssp             HHHTCCEEEEEECTTCCTTSCC
T ss_pred             HHcCCEEEEEEeeCCCCccceE
Confidence            999999987654   5545555

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.25  E-value=0.0073  Score=54.64  Aligned_cols=127  Identities=17%  Similarity=0.248  Sum_probs=84.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~Lk~  100 (389)
                      .++++||=+|=|.=++|.+||+..+....|++.-.+  ++..+   .|++|++.....+ +.+.+ -|+.+.     +..
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~--e~~~~---~A~~n~~~~~~~~nv~~~~-~Di~~~-----~~~  152 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERD--EDNLK---KAMDNLSEFYDIGNVRTSR-SDIADF-----ISD  152 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSC--HHHHH---HHHHHHHTTSCCTTEEEEC-SCTTTC-----CCS
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECC--HHHHH---HHHHHHHHhcCCCceEEEE-eeeecc-----ccc
Confidence            568899999999999999999988765567766544  33333   3777876654333 44444 466553     334


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEee
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~  180 (389)
                      ..||+|+.|.|..-                   .++..+..+|+|||.+.+..-+-+. -+ .+.+..+++|+..++...
T Consensus       153 ~~fD~V~ld~p~p~-------------------~~l~~~~~~LKpGG~lv~~~P~i~Q-v~-~~~~~l~~~gf~~i~~~E  211 (250)
T d1yb2a1         153 QMYDAVIADIPDPW-------------------NHVQKIASMMKPGSVATFYLPNFDQ-SE-KTVLSLSASGMHHLETVE  211 (250)
T ss_dssp             CCEEEEEECCSCGG-------------------GSHHHHHHTEEEEEEEEEEESSHHH-HH-HHHHHSGGGTEEEEEEEE
T ss_pred             ceeeeeeecCCchH-------------------HHHHHHHHhcCCCceEEEEeCCcCh-HH-HHHHHHHHCCCceeEEEE
Confidence            67999999988542                   4678899999999999876543220 01 122233457887666543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=96.16  E-value=0.031  Score=48.88  Aligned_cols=141  Identities=18%  Similarity=0.193  Sum_probs=86.6

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      .++...+||=||=|.=.++..|++++.   ++.+|.+|..+.+ +   .+..++....-.+-.-...-|+.+.      .
T Consensus        77 d~~~~~~VLDvGcG~G~~~~~la~~~p---~~~~~~~D~~~~~-~---~a~~~~~~~~~~~rv~~~~~D~~~~------~  143 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGKGGFAAAIARRAP---HVSATVLEMAGTV-D---TARSYLKDEGLSDRVDVVEGDFFEP------L  143 (253)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEECTTHH-H---HHHHHHHHTTCTTTEEEEECCTTSC------C
T ss_pred             CCccCCEEEEeCCCCCHHHHHHHHhcc---eeEEEEccCHHHH-H---HHHHHHHHhhcccchhhccccchhh------c
Confidence            467778999999999999999999873   4667778864333 2   2444544322111122233355331      1


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC----C------------------
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT----V------------------  157 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g----~------------------  157 (389)
                      ...||.|++++=---.   .|         +-...+|+++...|+|||.+.|.-...    .                  
T Consensus       144 ~~~~D~v~~~~vlh~~---~d---------~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g  211 (253)
T d1tw3a2         144 PRKADAIILSFVLLNW---PD---------HDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGG  211 (253)
T ss_dssp             SSCEEEEEEESCGGGS---CH---------HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSC
T ss_pred             ccchhheeeccccccC---Cc---------hhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCC
Confidence            2469999876421111   11         113467899999999999999864321    1                  


Q ss_pred             -CCCcccHHHHHhhCCcEEEEEeeCCCCC
Q 016441          158 -PFSNWNIKELAIGSSLSLIWCSEFKIED  185 (389)
Q Consensus       158 -PY~sWnIe~LAa~aGL~L~~~~~F~~~~  185 (389)
                       .++.=+..++.+++||.+++...+....
T Consensus       212 ~~rt~~e~~~ll~~AGf~~~~v~~~~~p~  240 (253)
T d1tw3a2         212 ALRTREKWDGLAASAGLVVEEVRQLPSPT  240 (253)
T ss_dssp             CCCBHHHHHHHHHHTTEEEEEEEEEECSS
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEEECCCCC
Confidence             1111133458899999999887765443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.62  E-value=0.045  Score=49.87  Aligned_cols=134  Identities=17%  Similarity=0.222  Sum_probs=87.1

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      -.++++||=||=|-=+++.-+|+.+|  ..+++-+... +++.    .|.+.+++..-.+-..+.-.|+..+.       
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~-~Q~~----~a~~~~~~~g~~~~v~~~~~d~~~~~-------  125 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSK-NQAN----HVQQLVANSENLRSKRVLLAGWEQFD-------  125 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCH-HHHH----HHHHHHHTCCCCSCEEEEESCGGGCC-------
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccH-HHHH----HHHHHHHhhhhhhhhHHHHhhhhccc-------
Confidence            47899999999999999999999985  5677766653 3221    24444443322232223344665543       


Q ss_pred             CCcceEE--EcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC-CC---------CCC-------c
Q 016441          101 RKFDRII--FNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT-TV---------PFS-------N  161 (389)
Q Consensus       101 ~~FDrII--FNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~-g~---------PY~-------s  161 (389)
                      ..||+|+  .-|=|+|.+           |   ...||+.+..+|+|+|...|.... ..         |+.       .
T Consensus       126 ~~fD~i~si~~~eh~~~~-----------~---~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  191 (285)
T d1kpga_         126 EPVDRIVSIGAFEHFGHE-----------R---YDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLK  191 (285)
T ss_dssp             CCCSEEEEESCGGGTCTT-----------T---HHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHH
T ss_pred             ccccceeeehhhhhcCch-----------h---HHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhh
Confidence            5699986  467787741           1   346999999999999988763321 11         110       1


Q ss_pred             c---------------cHHHHHhhCCcEEEEEeeCC
Q 016441          162 W---------------NIKELAIGSSLSLIWCSEFK  182 (389)
Q Consensus       162 W---------------nIe~LAa~aGL~L~~~~~F~  182 (389)
                      |               .+..++.++||.+.+...+.
T Consensus       192 fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~~~  227 (285)
T d1kpga_         192 FIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQ  227 (285)
T ss_dssp             HHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             HHHHHhccCCCCCChhhHHHHHHHhchhhcccccch
Confidence            1               24457888999999887664

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=95.55  E-value=0.02  Score=48.04  Aligned_cols=107  Identities=16%  Similarity=0.238  Sum_probs=71.5

Q ss_pred             cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc
Q 016441           19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL   98 (389)
Q Consensus        19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L   98 (389)
                      ....++++||=||=|.=.|+..|++..   ..|+|.  |-.+++.+   .|+.+++...-.++.++ .-|+++|.    +
T Consensus        11 ~~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gv--D~s~~~i~---~A~~~~~~~~~~~i~~~-~~d~~~l~----~   77 (231)
T d1vl5a_          11 AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAF--DLTEDILK---VARAFIEGNGHQQVEYV-QGDAEQMP----F   77 (231)
T ss_dssp             HTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEE--ESCHHHHH---HHHHHHHHTTCCSEEEE-ECCC-CCC----S
T ss_pred             cCCCCcCEEEEecccCcHHHHHHHHhC---CEEEEE--ECCHHHHh---hhhhccccccccccccc-cccccccc----c
Confidence            466788999999999999999998763   356554  53333333   25666665544445544 34777764    4


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      ..+.||.|+.++=  -. -.+|           ...+|+.+..+|+|||.+.++
T Consensus        78 ~~~~fD~v~~~~~--l~-~~~d-----------~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          78 TDERFHIVTCRIA--AH-HFPN-----------PASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             CTTCEEEEEEESC--GG-GCSC-----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccccccc--cc-ccCC-----------HHHHHHHHHHhcCCCcEEEEE
Confidence            4578999987742  10 1112           347899999999999988875

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.47  E-value=0.014  Score=50.77  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=69.1

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      -.++++||-||=|.=.+|..||+..+....|+|.-.+  +++.+   .|+.|++...-.++.+.++ |+.+.-    ...
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~--~~~~~---~a~~~~~~~~~~n~~~~~~-d~~~~~----~~~  142 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS--RKICE---IAKRNVERLGIENVIFVCG-DGYYGV----PEF  142 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESC--HHHHH---HHHHHHHHTTCCSEEEEES-CGGGCC----GGG
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecc--hhhHH---HhhhhHhhhcccccccccC-chHHcc----ccc
Confidence            4678999999999999999999988765567665544  44443   3677777665556666554 555432    234


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      ..||+|+.++---      +.      -.+        ....|+|||.+.+.+
T Consensus       143 ~~fD~I~~~~~~~------~~------p~~--------l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         143 SPYDVIFVTVGVD------EV------PET--------WFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CCEEEEEECSBBS------CC------CHH--------HHHHEEEEEEEEEEB
T ss_pred             cchhhhhhhccHH------Hh------HHH--------HHHhcCCCcEEEEEE
Confidence            6799999875321      11      011        234599999998865

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.026  Score=52.72  Aligned_cols=133  Identities=20%  Similarity=0.221  Sum_probs=82.2

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-----------CCCEEEecccc
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-----------LGTCILHGVDA   89 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-----------~Gv~VlfgVDA   89 (389)
                      -.++++||=+|=|.=++|.+||+..+..-.|++  +|-.++..+   .|++|++....           .++.+.++ |+
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t--~E~~~~~~~---~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~-di  169 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVIS--FEVRKDHHD---LAKKNYKHWRDSWKLSHVEEWPDNVDFIHK-DI  169 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEE--EESSHHHHH---HHHHHHHHHHHHHTTTCSSCCCCCEEEEES-CT
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEE--ecCCHHHHH---HHHHHHHHhhhhhhhhhhhccccceeEEec-ch
Confidence            357899999999999999999999875555654  665555544   48888887642           12344333 44


Q ss_pred             CCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHH-HH
Q 016441           90 TTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKE-LA  168 (389)
Q Consensus        90 TkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~-LA  168 (389)
                      .....  .+....||+|+.+-|..-                   ..+..+..+|+|||.+.+-.-+-.  .-+.+.+ |-
T Consensus       170 ~~~~~--~~~~~~fD~V~LD~p~P~-------------------~~l~~~~~~LKpGG~lv~~~P~i~--Qv~~~~~~l~  226 (324)
T d2b25a1         170 SGATE--DIKSLTFDAVALDMLNPH-------------------VTLPVFYPHLKHGGVCAVYVVNIT--QVIELLDGIR  226 (324)
T ss_dssp             TCCC---------EEEEEECSSSTT-------------------TTHHHHGGGEEEEEEEEEEESSHH--HHHHHHHHHH
T ss_pred             hhccc--ccCCCCcceEeecCcCHH-------------------HHHHHHHHhccCCCEEEEEeCCHH--HHHHHHHHHH
Confidence            43322  345578999999988642                   246678999999999887653332  1122222 22


Q ss_pred             h-hCCcEEEEEeeCC
Q 016441          169 I-GSSLSLIWCSEFK  182 (389)
Q Consensus       169 a-~aGL~L~~~~~F~  182 (389)
                      + +.++..++.+.--
T Consensus       227 ~~~~~f~~i~~~E~~  241 (324)
T d2b25a1         227 TCELALSCEKISEVI  241 (324)
T ss_dssp             HHTCCEEEEEEECCC
T ss_pred             HcCCCceeeEEEEEE
Confidence            1 3467777765443

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.40  E-value=0.086  Score=45.57  Aligned_cols=136  Identities=14%  Similarity=0.095  Sum_probs=86.5

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      +..++++||=||=|.=.++..|++..+.+ .|  +..|-.+++.+.   +..+.   ++.+-.+..-.|+........ .
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g-~V--~gvDis~~~i~~---a~~~a---~~~~ni~~i~~d~~~~~~~~~-~  122 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVDEG-II--YAVEYSAKPFEK---LLELV---RERNNIIPLLFDASKPWKYSG-I  122 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTS-EE--EEECCCHHHHHH---HHHHH---HHCSSEEEECSCTTCGGGTTT-T
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhccCC-eE--EEEeCCHHHHHH---HHHHh---hccCCceEEEeeccCcccccc-c
Confidence            56778999999999999999999987543 45  445644444432   33333   334544444557776544331 2


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC---CCC-CCcccHHHHHh--hCCc
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT---TVP-FSNWNIKELAI--GSSL  173 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~---g~P-Y~sWnIe~LAa--~aGL  173 (389)
                      -..+|.|.-+++|...                ...|++++..+|+++|.+.|..+.   +.+ -..+.+....+  ++||
T Consensus       123 ~~~vd~v~~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf  186 (209)
T d1nt2a_         123 VEKVDLIYQDIAQKNQ----------------IEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDF  186 (209)
T ss_dssp             CCCEEEEEECCCSTTH----------------HHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTS
T ss_pred             cceEEEEEecccChhh----------------HHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCC
Confidence            2457777677888752                235788999999999999998863   111 12233333222  4799


Q ss_pred             EEEEEeeC
Q 016441          174 SLIWCSEF  181 (389)
Q Consensus       174 ~L~~~~~F  181 (389)
                      .+.+....
T Consensus       187 ~i~E~i~L  194 (209)
T d1nt2a_         187 KIVKHGSL  194 (209)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEcc
Confidence            99887643

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.35  E-value=0.053  Score=49.00  Aligned_cols=104  Identities=19%  Similarity=0.249  Sum_probs=69.6

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      -.++++||=||=|.=+++.-+++.+|  .+||+..+.. +++.    .|++.+++..-.+.......|...+       .
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~-~q~~----~a~~~~~~~~l~~~~~~~~~d~~~~-------~  115 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSK-NQHA----RCEQVLASIDTNRSRQVLLQGWEDF-------A  115 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCH-HHHH----HHHHHHHTSCCSSCEEEEESCGGGC-------C
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchH-HHHH----HHHHHHHhhccccchhhhhhhhhhh-------c
Confidence            56789999999998899999998885  4677776653 3322    2333333322112222233454443       2


Q ss_pred             CCcceEE--EcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          101 RKFDRII--FNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       101 ~~FDrII--FNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      .+||+|+  .-|-|+|.   +        |   +..||+.+..+|+|+|.+.|.
T Consensus       116 ~~fD~i~si~~~eh~~~---~--------~---~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         116 EPVDRIVSIEAFEHFGH---E--------N---YDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             CCCSEEEEESCGGGTCG---G--------G---HHHHHHHHHHHSCTTCEEEEE
T ss_pred             cchhhhhHhhHHHHhhh---h--------h---HHHHHHHHHhccCCCceEEEE
Confidence            5799998  45778873   1        1   568999999999999999875

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.034  Score=50.82  Aligned_cols=139  Identities=20%  Similarity=0.138  Sum_probs=91.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ...+||=+|=|.=--+++||.... ...++|+=. |.+.+.    -|+.|++.+.-.++.++.+ |.-   .  .+...+
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDi-s~~Al~----~A~~Na~~~~~~~v~~~~~-d~~---~--~~~~~~  175 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERP-DCEIIAVDR-MPDAVS----LAQRNAQHLAIKNIHILQS-DWF---S--ALAGQQ  175 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECS-SHHHHH----HHHHHHHHHTCCSEEEECC-STT---G--GGTTCC
T ss_pred             cccceeeeehhhhHHHHHHHhhCC-cceeeeccc-hhHHHh----HHHHHHHHhCcccceeeec-ccc---c--ccCCCc
Confidence            456899999999999999998873 456777543 344443    3788988876545555443 211   1  244578


Q ss_pred             cceEEEcCCCCCCCCCccchHHH-----------HHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhC
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLI-----------EMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGS  171 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~I-----------r~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~a  171 (389)
                      ||.||.|=|-+...-.+.....+           ..-...++.++..|.++|+++|.+.+-+-..+   .=.+.+++++.
T Consensus       176 fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q---~~~v~~~l~~~  252 (274)
T d2b3ta1         176 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQ---GEAVRQAFILA  252 (274)
T ss_dssp             EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSC---HHHHHHHHHHT
T ss_pred             eeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchH---HHHHHHHHHHC
Confidence            99999999988631100000000           01235678899999999999999998763322   23677888888


Q ss_pred             CcEEE
Q 016441          172 SLSLI  176 (389)
Q Consensus       172 GL~L~  176 (389)
                      |+..+
T Consensus       253 gf~~i  257 (274)
T d2b3ta1         253 GYHDV  257 (274)
T ss_dssp             TCTTC
T ss_pred             CCCeE
Confidence            87543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=95.30  E-value=0.032  Score=46.37  Aligned_cols=126  Identities=15%  Similarity=0.172  Sum_probs=82.9

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      +.+..+.+..+||=||=|.=.|+..|++       ++  +.|-...+.          +..++.++.+ +.-|+.+|.  
T Consensus        29 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~-------~~--giD~s~~~~----------~~a~~~~~~~-~~~d~~~l~--   86 (208)
T d1vlma_          29 QAVKCLLPEGRGVEIGVGTGRFAVPLKI-------KI--GVEPSERMA----------EIARKRGVFV-LKGTAENLP--   86 (208)
T ss_dssp             HHHHHHCCSSCEEEETCTTSTTHHHHTC-------CE--EEESCHHHH----------HHHHHTTCEE-EECBTTBCC--
T ss_pred             HHHHhhCCCCeEEEECCCCcccccccce-------EE--EEeCChhhc----------cccccccccc-ccccccccc--
Confidence            4566667778999999887667766632       23  446333332          2334456654 557787764  


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC------------------
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV------------------  157 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------------------  157 (389)
                        +..+.||.|+.++  +=. -.+|           ...+|+.+..+|+|||.+.++..+..                  
T Consensus        87 --~~~~~fD~I~~~~--~l~-h~~d-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~  150 (208)
T d1vlma_          87 --LKDESFDFALMVT--TIC-FVDD-----------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYK  150 (208)
T ss_dssp             --SCTTCEEEEEEES--CGG-GSSC-----------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCST
T ss_pred             --ccccccccccccc--ccc-cccc-----------cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccc
Confidence              3568899999875  211 0011           34689999999999999998875432                  


Q ss_pred             ---CCCcccHHHHHhhCCcEEEEEe
Q 016441          158 ---PFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       158 ---PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                         .++...+.++.+++||..++..
T Consensus       151 ~~~~~s~~~l~~~l~~~Gf~~i~v~  175 (208)
T d1vlma_         151 NARFFSTEELMDLMRKAGFEEFKVV  175 (208)
T ss_dssp             TCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEE
Confidence               1345678889999999877644

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=95.21  E-value=0.029  Score=47.06  Aligned_cols=101  Identities=13%  Similarity=0.175  Sum_probs=67.4

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..++.+||=||=|.=.++..|++.   +..|+++-+.  +++.          +..++.+......-|+++|.    +..
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s--~~~l----------~~a~~~~~~~~~~~~~~~l~----~~~  100 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPS--KEML----------EVAREKGVKNVVEAKAEDLP----FPS  100 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESC--HHHH----------HHHHHHTCSCEEECCTTSCC----SCT
T ss_pred             cCCCCEEEEECCCCchhccccccc---ceEEEEeecc--cccc----------cccccccccccccccccccc----ccc
Confidence            445679999999999999999875   3467776443  2222          22333444334556888874    345


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      +.||.|+..+.=...  .+|           ...+|+.+.++|+|||.+.++.
T Consensus       101 ~~fD~ii~~~~~~~~--~~d-----------~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         101 GAFEAVLALGDVLSY--VEN-----------KDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             TCEEEEEECSSHHHH--CSC-----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccceeeecchhhh--hhh-----------HHHHHHHHHhhcCcCcEEEEEE
Confidence            889999876541110  012           2358899999999999999886

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=95.12  E-value=0.036  Score=50.08  Aligned_cols=130  Identities=17%  Similarity=0.206  Sum_probs=84.2

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      -.++++||=+|=|.=++|..||+..+....|+  ++|-.++..+   .|++|++...-.....+..-|+   ..  .+..
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~--~vD~~~~~~~---~A~~~~~~~g~~~~v~~~~~d~---~~--~~~~  170 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVF--AYEKREEFAK---LAESNLTKWGLIERVTIKVRDI---SE--GFDE  170 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEE--EECCCHHHHH---HHHHHHHHTTCGGGEEEECCCG---GG--CCSC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEE--EEeCCHHHHH---HHHHHHHHhccccCcEEEeccc---cc--cccc
Confidence            35789999999999999999999886555565  4554444443   3777776543211111111222   11  2345


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEee
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSE  180 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~  180 (389)
                      ..||.|+.+.|..                   ..++..+..+|+|||.+.+..-+-+  .--.+.+..+++||..++...
T Consensus       171 ~~~D~V~~d~p~p-------------------~~~l~~~~~~LKpGG~lv~~~P~~~--Qv~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         171 KDVDALFLDVPDP-------------------WNYIDKCWEALKGGGRFATVCPTTN--QVQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             CSEEEEEECCSCG-------------------GGTHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHSSEEEEEEEC
T ss_pred             cceeeeEecCCCH-------------------HHHHHHHHhhcCCCCEEEEEeCccc--HHHHHHHHHHHCCceeEEEEE
Confidence            7799999887753                   1578899999999999987653322  112344556778998877764


Q ss_pred             C
Q 016441          181 F  181 (389)
Q Consensus       181 F  181 (389)
                      -
T Consensus       230 ~  230 (266)
T d1o54a_         230 S  230 (266)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.06  E-value=0.09  Score=48.37  Aligned_cols=144  Identities=18%  Similarity=0.194  Sum_probs=92.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ++++||=+-=|-=.=|..|+...+....|+|...+ ..    +....+.|++.+.-.++ +...-|++.+..    ....
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~-~~----r~~~l~~~~~r~~~~~i-~~~~~d~~~~~~----~~~~  185 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVD-EN----RLRETRLNLSRLGVLNV-ILFHSSSLHIGE----LNVE  185 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSC-HH----HHHHHHHHHHHHTCCSE-EEESSCGGGGGG----GCCC
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccC-HH----HHHHHHHHHHHHHhhcc-cccccccccccc----cccc
Confidence            34455444433333344455554444567776554 22    22335566666554443 455567777643    2467


Q ss_pred             cceEEEcCCCCCCCCCc---------cchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhhCC
Q 016441          103 FDRIIFNFPHAGFYGKE---------DNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIGSS  172 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkE---------D~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~aG  172 (389)
                      ||+|+-+=|..|. |.-         .....+.....+=...+.+|.++|++||.|.-+.|+-.|- +.+.|+...++.+
T Consensus       186 fD~ILvDaPCSg~-G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~  264 (313)
T d1ixka_         186 FDKILLDAPCTGS-GTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD  264 (313)
T ss_dssp             EEEEEEECCTTST-TTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred             ccEEEEccccccC-CceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCC
Confidence            9999999999994 421         1234466666777788899999999999999999998775 5566666667777


Q ss_pred             cEEEE
Q 016441          173 LSLIW  177 (389)
Q Consensus       173 L~L~~  177 (389)
                      +.++.
T Consensus       265 ~~~~~  269 (313)
T d1ixka_         265 VELLP  269 (313)
T ss_dssp             EEEEC
T ss_pred             CEEee
Confidence            76654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.06  E-value=0.013  Score=53.57  Aligned_cols=131  Identities=14%  Similarity=0.134  Sum_probs=86.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      ..-.+||++|=|+.+-++.++++. ....|++--.|.. -++.++|-.  .|-..+++..++|+.+ ||..--..   ..
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~--~~~~~~~d~r~~i~~~-D~~~~l~~---~~  146 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLP--SIAGKLDDPRVDVQVD-DGFMHIAK---SE  146 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCH--HHHTTTTSTTEEEEES-CSHHHHHT---CC
T ss_pred             CCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhCh--hhcccccCCCeEEEec-hHHHHHhh---cC
Confidence            345789999999999999998764 3468888888844 455566632  2334456666777765 77662211   23


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-C---cccHHHHHhhC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-S---NWNIKELAIGS  171 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~---sWnIe~LAa~a  171 (389)
                      ++||.||-+.|..-.... .         -.-..||+.|++.|+++|-+.+-.  +.|+ +   .+.+.+--++.
T Consensus       147 ~~yDvIi~D~~~p~~~~~-~---------L~t~eFy~~~~~~L~~~Gv~v~q~--~s~~~~~~~~~~i~~tl~~~  209 (274)
T d1iy9a_         147 NQYDVIMVDSTEPVGPAV-N---------LFTKGFYAGIAKALKEDGIFVAQT--DNPWFTPELITNVQRDVKEI  209 (274)
T ss_dssp             SCEEEEEESCSSCCSCCC-C---------CSTTHHHHHHHHHEEEEEEEEEEC--CCTTTCHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEcCCCCCCcch-h---------hccHHHHHHHHhhcCCCceEEEec--CCccccHHHHHHHHHhhhhh
Confidence            679999999987542111 0         114589999999999999776543  3333 2   35555544444

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=95.03  E-value=0.057  Score=48.03  Aligned_cols=107  Identities=19%  Similarity=0.171  Sum_probs=71.9

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEe-ccccCCCCCCCCc
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILH-GVDATTMELHPDL   98 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vlf-gVDATkL~~~~~L   98 (389)
                      ..++..+||=||=|.=.++..|++..+.+..++++  |-.+++.++   |++++   +..+..|-| .-|++++..    
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~gi--D~s~~~l~~---a~~~~---~~~~~~~~f~~~d~~~~~~----   91 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGI--DSGETLLAE---ARELF---RLLPYDSEFLEGDATEIEL----   91 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEE--ECCHHHHHH---HHHHH---HSSSSEEEEEESCTTTCCC----
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEE--ecchhHhhh---hhccc---ccccccccccccccccccc----
Confidence            46677899999999999999999877555667665  633334332   44443   445666654 347777642    


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      . ..||.|+.++=.--.   +|           ...+++.+.++|+|||.+.+.-
T Consensus        92 ~-~~fD~v~~~~~l~~~---~d-----------~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          92 N-DKYDIAICHAFLLHM---TT-----------PETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             S-SCEEEEEEESCGGGC---SS-----------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c-CCceEEEEehhhhcC---CC-----------HHHHHHHHHHHcCcCcEEEEEE
Confidence            2 469999998632111   11           2367899999999999887753

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=95.00  E-value=0.042  Score=46.79  Aligned_cols=107  Identities=19%  Similarity=0.248  Sum_probs=71.9

Q ss_pred             cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC
Q 016441           19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLD-SYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD   97 (389)
Q Consensus        19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD-SeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~   97 (389)
                      ...++++|||=||=|.=.++..|++..   .+++  ..| |.+.+.    .|+++++...-.++.+ ..-|+.++.    
T Consensus        12 ~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~--gvD~S~~~l~----~A~~~~~~~~~~~~~~-~~~d~~~~~----   77 (234)
T d1xxla_          12 AECRAEHRVLDIGAGAGHTALAFSPYV---QECI--GVDATKEMVE----VASSFAQEKGVENVRF-QQGTAESLP----   77 (234)
T ss_dssp             HTCCTTCEEEEESCTTSHHHHHHGGGS---SEEE--EEESCHHHHH----HHHHHHHHHTCCSEEE-EECBTTBCC----
T ss_pred             hCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEE--EEeCChhhhh----hhhhhhcccccccccc-ccccccccc----
Confidence            346789999999999999999999863   3564  566 444442    2555555543233443 333777653    


Q ss_pred             cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441           98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus        98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      +..+.||.|+.++=-.=.   .|           ...+|+.+..+|+|+|.+.++-
T Consensus        78 ~~~~~fD~v~~~~~l~~~---~d-----------~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          78 FPDDSFDIITCRYAAHHF---SD-----------VRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             SCTTCEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccceeeeeceeecc---cC-----------HHHHHHHHHHeeCCCcEEEEEE
Confidence            456789999986531101   11           3478999999999999998864

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.96  E-value=0.18  Score=44.19  Aligned_cols=139  Identities=14%  Similarity=0.116  Sum_probs=87.6

Q ss_pred             cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc
Q 016441           19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL   98 (389)
Q Consensus        19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L   98 (389)
                      .+..++.+||=+|=|.=.++..||+.. ....|+|--+.  +.+.+.   +.+.   .++.+..+..-.|+.........
T Consensus        70 l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS--~~~i~~---a~~~---a~~~~ni~~i~~d~~~~~~~~~~  140 (230)
T d1g8sa_          70 MPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYA--PRIMRE---LLDA---CAERENIIPILGDANKPQEYANI  140 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESC--HHHHHH---HHHH---TTTCTTEEEEECCTTCGGGGTTT
T ss_pred             CCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCc--HHHHHH---HHHH---HhhhcccceEEEeeccCcccccc
Confidence            467889999999999999999999874 34467665443  333321   2221   23345455555677665543322


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC------CCCcc-cHHHHHhhC
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV------PFSNW-NIKELAIGS  171 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------PY~sW-nIe~LAa~a  171 (389)
                       ...+|.|+..+.|...                ...|+.++..+|+++|.+.|.++...      |.... ++++.-+++
T Consensus       141 -~~~v~~i~~~~~~~~~----------------~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~a  203 (230)
T d1g8sa_         141 -VEKVDVIYEDVAQPNQ----------------AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAG  203 (230)
T ss_dssp             -CCCEEEEEECCCSTTH----------------HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHH
T ss_pred             -cceeEEeeccccchHH----------------HHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHc
Confidence             2345556666666531                34678889999999999999886432      21111 234455678


Q ss_pred             CcEEEEEeeCCC
Q 016441          172 SLSLIWCSEFKI  183 (389)
Q Consensus       172 GL~L~~~~~F~~  183 (389)
                      ||.+++.+.+.+
T Consensus       204 GF~ive~idL~p  215 (230)
T d1g8sa_         204 GFKIVDEVDIEP  215 (230)
T ss_dssp             TEEEEEEEECTT
T ss_pred             CCEEEEEecCCC
Confidence            999999887653

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.063  Score=46.94  Aligned_cols=106  Identities=15%  Similarity=0.222  Sum_probs=69.6

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHH-----HHhCCCEEEeccccCCCCC
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDN-----LKKLGTCILHGVDATTMEL   94 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~-----Lr~~Gv~VlfgVDATkL~~   94 (389)
                      ..+++++||-||=|.=-.+..||+..+....|++  .|..+++.+.   |.+|++.     +.-..+.+.+ -|+.... 
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~--ie~~~~l~~~---a~~~l~~~~~~~~~~~~~~~~~-gD~~~~~-  145 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIG--IDHIKELVDD---SVNNVRKDDPTLLSSGRVQLVV-GDGRMGY-  145 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEE--EESCHHHHHH---HHHHHHHHCTHHHHTSSEEEEE-SCGGGCC-
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEE--EcCCHHHHHH---HHHhccccCcccccccceEEEE-eeccccc-
Confidence            3477899999999999999999998765555664  4655666653   6666654     3333455554 3666543 


Q ss_pred             CCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441           95 HPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus        95 ~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                         .....||+|+.+.-..      ..      -.        ...+.|++||.+.+.+..
T Consensus       146 ---~~~~~fD~I~~~~~~~------~i------p~--------~l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         146 ---AEEAPYDAIHVGAAAP------VV------PQ--------ALIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             ---GGGCCEEEEEECSBBS------SC------CH--------HHHHTEEEEEEEEEEESC
T ss_pred             ---chhhhhhhhhhhcchh------hc------CH--------HHHhhcCCCcEEEEEEcc
Confidence               2347899999875211      10      11        134579999999987643

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.05  Score=48.91  Aligned_cols=107  Identities=21%  Similarity=0.177  Sum_probs=65.8

Q ss_pred             CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCCc
Q 016441           20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPDL   98 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~L   98 (389)
                      ...++++||=||-|-=.+|+.+|++ | +..|+|.-...  .+.    .+..++.+..... ++++ .-|+.++..    
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~-G-a~~V~aid~s~--~~~----~a~~~~~~~~~~~~i~~~-~~~~~~l~~----   98 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE--ILY----QAMDIIRLNKLEDTITLI-KGKIEEVHL----   98 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST--HHH----HHHHHHHHTTCTTTEEEE-ESCTTTSCC----
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHc-C-CCEEEEEeCHH--HHH----HHHHHHHHhCCCccceEE-EeeHHHhcC----
Confidence            3456889999999987788888886 3 45787775432  221    1333333222222 3443 457777653    


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEE
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVH  150 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIH  150 (389)
                      ...+||.||.+..-.+..+           ..++..++..+..+|+|+|.|.
T Consensus        99 ~~~~~D~Ivse~~~~~~~~-----------e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          99 PVEKVDVIISEWMGYFLLF-----------ESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             SCSCEEEEEECCCBTTBTT-----------TCHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccceEEEEeeeeeeccc-----------ccccHHHHHHHHhcCCCCcEEe
Confidence            3478999999765444312           2235556666678999999775

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=94.61  E-value=0.12  Score=45.18  Aligned_cols=136  Identities=13%  Similarity=0.072  Sum_probs=85.1

Q ss_pred             ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCC
Q 016441           18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHP   96 (389)
Q Consensus        18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~   96 (389)
                      ..+.+++.+||=||=|.=.++..||++++  .+|+|..+. .. +.+.   |.++.+...- ..++ ...-|+.+|.   
T Consensus        62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s-~~-~i~~---a~~~~~~~gl~~~v~-~~~~d~~~l~---  130 (282)
T d2o57a1          62 TGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIA-PV-QNKR---NEEYNNQAGLADNIT-VKYGSFLEIP---  130 (282)
T ss_dssp             TTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESC-HH-HHHH---HHHHHHHHTCTTTEE-EEECCTTSCS---
T ss_pred             hcCCCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEecc-ch-hhhh---hhccccccccccccc-cccccccccc---
Confidence            34677899999999999999999998874  466654433 33 2221   3334333211 1233 3446887763   


Q ss_pred             CcCCCCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec---CCCCCC-----------
Q 016441           97 DLRTRKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK---TTVPFS-----------  160 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk---~g~PY~-----------  160 (389)
                       +..+.||.|+...=  |+.     |           ...+|+.+..+|+|||.+.++-.   ++.+..           
T Consensus       131 -~~~~sfD~V~~~~~l~h~~-----d-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  193 (282)
T d2o57a1         131 -CEDNSYDFIWSQDAFLHSP-----D-----------KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL  193 (282)
T ss_dssp             -SCTTCEEEEEEESCGGGCS-----C-----------HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTC
T ss_pred             -ccccccchhhccchhhhcc-----C-----------HHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhcc
Confidence             34578999998742  332     1           23689999999999999888632   221110           


Q ss_pred             -cc----cHHHHHhhCCcEEEEEeeC
Q 016441          161 -NW----NIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       161 -sW----nIe~LAa~aGL~L~~~~~F  181 (389)
                       .|    ...++++++|+..+.....
T Consensus       194 ~~~~s~~~~~~~l~~~Gf~~i~~~d~  219 (282)
T d2o57a1         194 HDMGSLGLYRSLAKECGLVTLRTFSR  219 (282)
T ss_dssp             SSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             CCCCCHHHHHHHHHHcCCceEEEEEC
Confidence             11    1245778889887776654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.53  E-value=0.082  Score=45.14  Aligned_cols=101  Identities=19%  Similarity=0.308  Sum_probs=67.6

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeccccCCCCCCCCcCCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG--TCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G--v~VlfgVDATkL~~~~~Lk~~  101 (389)
                      ..+||=||=|.=.+|..|++..   .+|+  ..|-.+++.+.   |++++   +..|  ++++. -|++.+..     .+
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g---~~v~--GvD~S~~ml~~---A~~~~---~~~~~~v~~~~-~d~~~~~~-----~~  100 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKF---KNTW--AVDLSQEMLSE---AENKF---RSQGLKPRLAC-QDISNLNI-----NR  100 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGS---SEEE--EECSCHHHHHH---HHHHH---HHTTCCCEEEC-CCGGGCCC-----SC
T ss_pred             CCeEEEEeCcCCHHHHHHHHhC---CccE--eeccchhhhhh---ccccc---cccCccceeec-cchhhhcc-----cc
Confidence            4689999999999999998762   3555  56755555442   44443   3344  55543 47777642     35


Q ss_pred             CcceEEEcC---CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          102 KFDRIIFNF---PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       102 ~FDrIIFNF---PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      +||.|+..|   -|+-             +.+=+..+|+++.++|+|||.+.+.+.
T Consensus       101 ~fD~i~~~~~~~~~~~-------------~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         101 KFDLITCCLDSTNYII-------------DSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             CEEEEEECTTGGGGCC-------------SHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cccccceeeeeeeccC-------------CHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            799998643   2332             222356799999999999999988664

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.18  E-value=0.018  Score=53.87  Aligned_cols=124  Identities=17%  Similarity=0.086  Sum_probs=75.4

Q ss_pred             ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH--HhCCCEEEeccccCCCCCC
Q 016441           18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL--KKLGTCILHGVDATTMELH   95 (389)
Q Consensus        18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L--r~~Gv~VlfgVDATkL~~~   95 (389)
                      +..++++.+||=+.=|.=.||+++|..   +..|  |+.|......+   .|++|++.-  ....++++. -||.+.-..
T Consensus       127 ~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V--~~VD~s~~al~---~a~~N~~ln~~~~~~~~~i~-~D~~~~l~~  197 (309)
T d2igta1         127 VETADRPLKVLNLFGYTGVASLVAAAA---GAEV--THVDASKKAIG---WAKENQVLAGLEQAPIRWIC-EDAMKFIQR  197 (309)
T ss_dssp             HHHSSSCCEEEEETCTTCHHHHHHHHT---TCEE--EEECSCHHHHH---HHHHHHHHHTCTTSCEEEEC-SCHHHHHHH
T ss_pred             HhhccCCCeEEEecCCCcHHHHHHHhC---CCeE--EEEeChHHHHH---HHHHhhhhhcccCCcEEEEe-CCHHHhHHH
Confidence            455788899988877776777777753   3354  45775555544   377887643  222344443 366553222


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      ...++.+||.||.|=|-.|. ++......++.+.   ......|..+|+++|...|+.+
T Consensus       198 ~~~~~~~fD~IilDPP~f~~-~~~~~~~~~~~~~---~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         198 EERRGSTYDIILTDPPKFGR-GTHGEVWQLFDHL---PLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHHTCCBSEEEECCCSEEE-CTTCCEEEHHHHH---HHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HhhcCCCCCEEEECCCcccc-cccchhHHHHHHH---HHHHHHHHHhcCCCCCEEEEec
Confidence            22246889999999997763 3332223344443   3455678999999986444434

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.16  E-value=0.13  Score=46.60  Aligned_cols=127  Identities=19%  Similarity=0.188  Sum_probs=85.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC---CCEEEeccccCCCCCCCCc
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL---GTCILHGVDATTMELHPDL   98 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~---Gv~VlfgVDATkL~~~~~L   98 (389)
                      +++++||=+|=|.=|.|++||+..+..-.|++  +|-.++..+   .|++|++.+...   .+.+. .-|+....    +
T Consensus        95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~--~d~~~~~~~---~Ar~n~~~~~~~~~~nv~~~-~~d~~~~~----~  164 (264)
T d1i9ga_          95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVIS--YEQRADHAE---HARRNVSGCYGQPPDNWRLV-VSDLADSE----L  164 (264)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEE--ECSCHHHHH---HHHHHHHHHHTSCCTTEEEE-CSCGGGCC----C
T ss_pred             CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEE--ecCCHHHHH---HHHHhhhhhccCCCceEEEE-eccccccc----c
Confidence            57889999999999999999999875545554  454444444   488899887533   23333 33665532    3


Q ss_pred             CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHH-hhCCcEEEE
Q 016441           99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELA-IGSSLSLIW  177 (389)
Q Consensus        99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LA-a~aGL~L~~  177 (389)
                      ....||+|+.+-|..-                   .++..+..+|+|+|.+.+..-+-.  ..+.+.+.. .+.++..++
T Consensus       165 ~~~~fDaV~ldlp~P~-------------------~~l~~~~~~LkpGG~lv~~~P~i~--Qv~~~~~~l~~~~~f~~i~  223 (264)
T d1i9ga_         165 PDGSVDRAVLDMLAPW-------------------EVLDAVSRLLVAGGVLMVYVATVT--QLSRIVEALRAKQCWTEPR  223 (264)
T ss_dssp             CTTCEEEEEEESSCGG-------------------GGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHHSSBCCCE
T ss_pred             cCCCcceEEEecCCHH-------------------HHHHHHHhccCCCCEEEEEeCccC--hHHHHHHHHHHcCCeecce
Confidence            4578999999876542                   457789999999999987664332  234444433 456676555


Q ss_pred             Ee
Q 016441          178 CS  179 (389)
Q Consensus       178 ~~  179 (389)
                      ..
T Consensus       224 ~~  225 (264)
T d1i9ga_         224 AW  225 (264)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=94.05  E-value=0.24  Score=41.94  Aligned_cols=132  Identities=16%  Similarity=0.216  Sum_probs=81.6

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      +.+..|.+..+||=||=|.=.|+..|++.   +..++|.-.. .+ ..+.   |+.+    ...++.+.. .|+..+.  
T Consensus        13 ~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s-~~-~i~~---a~~~----~~~~~~~~~-~~~~~~~--   77 (225)
T d2p7ia1          13 RAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEAS-EE-AISH---AQGR----LKDGITYIH-SRFEDAQ--   77 (225)
T ss_dssp             HHHGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESC-HH-HHHH---HHHH----SCSCEEEEE-SCGGGCC--
T ss_pred             HHhhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCc-HH-Hhhh---hhcc----ccccccccc-ccccccc--
Confidence            34566777889999999999999999875   2467766554 22 2211   2222    123566554 4666553  


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhH-hcccCCCeEEEEecCCC-----------------
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSS-GMLRDGGEVHVSHKTTV-----------------  157 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~-~lL~~~GeIHVTLk~g~-----------------  157 (389)
                        + .++||.|+...  +=- -.+|           ...+++... .+|+++|.+.|+.-+..                 
T Consensus        78 --~-~~~fD~I~~~~--vle-h~~d-----------~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~  140 (225)
T d2p7ia1          78 --L-PRRYDNIVLTH--VLE-HIDD-----------PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNS  140 (225)
T ss_dssp             --C-SSCEEEEEEES--CGG-GCSS-----------HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTT
T ss_pred             --c-ccccccccccc--eeE-ecCC-----------HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhh
Confidence              2 36799999752  210 0111           235677776 78999999999874211                 


Q ss_pred             -------------CCCcccHHHHHhhCCcEEEEEe
Q 016441          158 -------------PFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       158 -------------PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                                   .|+.=.++.+..++||.++...
T Consensus       141 ~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~  175 (225)
T d2p7ia1         141 AVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS  175 (225)
T ss_dssp             CCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             hcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence                         0111147889999999887754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.00  E-value=0.16  Score=42.87  Aligned_cols=102  Identities=18%  Similarity=0.238  Sum_probs=66.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~Lk~~  101 (389)
                      +..+||=||=|.=.++..|+++ +  .++++.  |-.+.+.+   .|++++.   +.|..| ++.=|+++|..    . .
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~-~--~~v~gv--D~s~~mi~---~a~~~~~---~~~~~i~~~~~d~~~l~~----~-~  104 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAER-G--YEVVGL--DLHEEMLR---VARRKAK---ERNLKIEFLQGDVLEIAF----K-N  104 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT-T--CEEEEE--ESCHHHHH---HHHHHHH---HTTCCCEEEESCGGGCCC----C-S
T ss_pred             CCCEEEEeCCCCCccchhhccc-c--eEEEEE--eecccccc---ccccccc---cccccchheehhhhhccc----c-c
Confidence            4568999988887888889885 2  466555  63344443   2555544   344332 34557888752    2 5


Q ss_pred             CcceEEEcC---CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          102 KFDRIIFNF---PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       102 ~FDrIIFNF---PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      .||.|+..+   -|.              +.+=+..+++++..+|+|||.+.+++.
T Consensus       105 ~fD~I~~~~~~~~~~--------------~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         105 EFDAVTMFFSTIMYF--------------DEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             CEEEEEECSSGGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccchHhhhhhhhhcC--------------ChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            799999753   232              111235789999999999999998764

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.88  E-value=0.076  Score=48.07  Aligned_cols=105  Identities=19%  Similarity=0.166  Sum_probs=67.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ++++||=||-|.=-.|..+|++ | +..|+|.-....  +.    .+.++++.-.-.+...+..-|+..+.    +...+
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~-G-a~~V~avd~s~~--~~----~a~~~~~~n~~~~~v~~~~~~~~~~~----~~~~~  100 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSSI--SD----YAVKIVKANKLDHVVTIIKGKVEEVE----LPVEK  100 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTT--HH----HHHHHHHHTTCTTTEEEEESCTTTCC----CSSSC
T ss_pred             CcCEEEEEecCCcHHHHHHHHh-C-CCEEEEEcCcHH--Hh----hhhhHHHHhCCccccceEeccHHHcc----cccce
Confidence            5788999999987777777774 3 456777654432  21    13334333222232334445777764    34578


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEE
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVH  150 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIH  150 (389)
                      ||.|+.+....+..           +..++..++..+..+|+|+|.|.
T Consensus       101 ~D~ivs~~~~~~l~-----------~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         101 VDIIISEWMGYCLF-----------YESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EEEEEECCCBBTBT-----------BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEeeeeeeeeec-----------cHHHHHHHHHHHHhcCCCCeEEE
Confidence            99999987765542           22346678888899999998664

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.84  E-value=0.12  Score=42.81  Aligned_cols=103  Identities=17%  Similarity=0.129  Sum_probs=67.6

Q ss_pred             CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeccccCCCCCCCCcCCC
Q 016441           24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC--ILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~--VlfgVDATkL~~~~~Lk~~  101 (389)
                      ..+||=||=|.=..+..|++.   +..++|.  |-.+++.++   ++.+.+   +.|+.  -..-.|++++..     ..
T Consensus        31 ~grvLDiGcG~G~~~~~la~~---g~~v~gv--D~s~~~l~~---a~~~~~---~~~~~~~~~~~~d~~~~~~-----~~   94 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAAN---GYDVTAW--DKNPASMAN---LERIKA---AEGLDNLQTDLVDLNTLTF-----DG   94 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT---TCEEEEE--ESCHHHHHH---HHHHHH---HTTCTTEEEEECCTTTCCC-----CC
T ss_pred             CCcEEEECCCCCHHHHHHHHH---hhhhccc--cCcHHHHHH---HHHHhh---hccccchhhhheecccccc-----cc
Confidence            348999999999999999985   3467665  533333332   333333   34432  234456666542     36


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK  154 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk  154 (389)
                      .||.|+.++..--.            +...+..+++.+..+|+++|.+.++..
T Consensus        95 ~fD~I~~~~~~~~~------------~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          95 EYDFILSTVVMMFL------------EAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             CEEEEEEESCGGGS------------CTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccEEEEeeeeecC------------CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            79999987754321            222366899999999999999888754

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.02  Score=52.64  Aligned_cols=114  Identities=14%  Similarity=0.155  Sum_probs=74.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .-++||++|=|+.+-++.+.+.. +..+|++--+|.. -++.++|-.  .|-..++.-.++|+++ ||.+.-..   ...
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~--~~~~~~~d~rv~i~~~-Da~~~l~~---~~~  150 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLP--GMAIGYSSSKLTLHVG-DGFEFMKQ---NQD  150 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCH--HHHGGGGCTTEEEEES-CHHHHHHT---CSS
T ss_pred             CcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhch--hhccccCCCCceEEEc-cHHHHHhc---CCC
Confidence            34689999999999999998754 3568888888833 455566642  2334456666777654 55442211   236


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      +||.||-+.++...  .        ...-.-..||+.|+..|+++|-+.+-.
T Consensus       151 ~yDvIi~D~~~p~~--~--------~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         151 AFDVIITDSSDPMG--P--------AESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             CEEEEEEECC---------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCEEEEcCCCCCC--c--------ccccccHHHHHHHHHhcCCCCeEEEec
Confidence            89999999887432  1        112235689999999999999876653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.076  Score=46.37  Aligned_cols=119  Identities=14%  Similarity=0.110  Sum_probs=74.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHh---CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEE-EeccccCCCCC--
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAF---GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCI-LHGVDATTMEL--   94 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~---gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~V-lfgVDATkL~~--   94 (389)
                      .+.-+||=||=|.=.|+..|++++   ..+..+..|..|..+.+.++   ++++++...... +.+ .+..++..+..  
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAK---YKELVAKISNLENVKFAWHKETSSEYQSRM  115 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHH---HHHHHTTCCSCTTEEEEEECSCHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHH---HHHHHhhccccccccccchhhhhhhhcchh
Confidence            344479999999999988887653   23456777888976666654   344444433322 222 23333322110  


Q ss_pred             CCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441           95 HPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus        95 ~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                      .......+||.|+..+=.-..   +|           ...+++.+..+|+|+|.+.|+..++.
T Consensus       116 ~~~~~~~~fD~I~~~~~l~~~---~d-----------~~~~l~~l~~~LkpgG~l~i~~~~~~  164 (280)
T d1jqea_         116 LEKKELQKWDFIHMIQMLYYV---KD-----------IPATLKFFHSLLGTNAKMLIIVVSGS  164 (280)
T ss_dssp             TTSSSCCCEEEEEEESCGGGC---SC-----------HHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             cccCCCCceeEEEEccceecC---CC-----------HHHHHHHHHhhCCCCCEEEEEEecCc
Confidence            112345889999997652221   12           34788999999999999999987664

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=93.66  E-value=0.14  Score=45.79  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=77.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++++||=||=|.=.+|.++++. |  ..++|.=.| .+.+.    .|++|++. ....+.++. .|+..     .+...
T Consensus       119 ~~g~~VLDiGcGsG~l~i~aa~~-g--~~V~gvDis-~~av~----~A~~na~~-n~~~~~~~~-~d~~~-----~~~~~  183 (254)
T d2nxca1         119 RPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDID-PMVLP----QAEANAKR-NGVRPRFLE-GSLEA-----ALPFG  183 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESC-GGGHH----HHHHHHHH-TTCCCEEEE-SCHHH-----HGGGC
T ss_pred             CccCEEEEcccchhHHHHHHHhc-C--CEEEEEECC-hHHHH----HHHHHHHH-cCCceeEEe-ccccc-----ccccc
Confidence            35789999999998888888763 3  467776444 33332    36666543 122344433 23332     13357


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE--ecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS--HKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT--Lk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      +||.|+-|..                 ...+..++..+..+|+|||.+.++  +.+..    =.|.+..+++||.+.+..
T Consensus       184 ~fD~V~ani~-----------------~~~l~~l~~~~~~~LkpGG~lilSgil~~~~----~~v~~~~~~~Gf~~~~~~  242 (254)
T d2nxca1         184 PFDLLVANLY-----------------AELHAALAPRYREALVPGGRALLTGILKDRA----PLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             CEEEEEEECC-----------------HHHHHHHHHHHHHHEEEEEEEEEEEEEGGGH----HHHHHHHHHTTCEEEEEE
T ss_pred             ccchhhhccc-----------------cccHHHHHHHHHHhcCCCcEEEEEecchhhH----HHHHHHHHHCCCEEEEEE
Confidence            8999999831                 112456777788999999999986  22211    146667888999887754

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.14  E-value=0.04  Score=48.87  Aligned_cols=115  Identities=23%  Similarity=0.253  Sum_probs=70.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC---CEEEeccccCCCCCCCCcC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG---TCILHGVDATTMELHPDLR   99 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G---v~VlfgVDATkL~~~~~Lk   99 (389)
                      ...+||=||=|.=.++..||+. |  .+||  ..|-.+++++.   |+++....+...   ..++-.+|...+.... ..
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~-g--~~v~--gvD~S~~ml~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  126 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEE-G--FSVT--SVDASDKMLKY---ALKERWNRRKEPAFDKWVIEEANWLTLDKDV-PA  126 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHT-T--CEEE--EEESCHHHHHH---HHHHHHHTTTSHHHHTCEEEECCGGGHHHHS-CC
T ss_pred             CCCEEEEecCCCcHHHHHHHHc-C--Ceee--eccCchHHHHH---HHHHHHhcccccccceeeeeecccccccccc-CC
Confidence            4579999999999999999985 3  4665  47744444432   444444322211   1233344444333221 12


Q ss_pred             CCCcceEEEc---CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441          100 TRKFDRIIFN---FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT  155 (389)
Q Consensus       100 ~~~FDrIIFN---FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  155 (389)
                      ...||.|+.-   |.|+...-         ...+-+..+|+++..+|+|||.+.+++.+
T Consensus       127 ~~~fd~v~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         127 GDGFDAVICLGNSFAHLPDSK---------GDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             TTCEEEEEECSSCGGGSCCTT---------SSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCCceEEEEecCchhhcCCcc---------cChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            4679999863   57775311         01123567999999999999999987753

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.09  E-value=0.032  Score=51.24  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=78.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCC-CCCCCCcCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATT-MELHPDLRT  100 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATk-L~~~~~Lk~  100 (389)
                      +-++||++|=||-+-+..+++.. +...|++--+|.+ -++.++|-.  .+-..++.-.++|+.+ ||.+ |.+.   ..
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~--~~~~~~~~~r~~i~~~-Da~~~l~~~---~~  152 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFP--DVAIGYEDPRVNLVIG-DGVAFLKNA---AE  152 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCH--HHHGGGGSTTEEEEES-CHHHHHHTS---CT
T ss_pred             CCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhch--hhhccccCCCcEEEEc-cHHHHHhhc---cc
Confidence            45689999999999999998854 3457888888843 355666642  2333466667888877 5543 3221   23


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH  153 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL  153 (389)
                      ++||.||-+.+....  .        ..+-.-..||+.+++.|+++|-+.+-+
T Consensus       153 ~~yDvIi~D~~dp~~--~--------~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         153 GSYDAVIVDSSDPIG--P--------AKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             TCEEEEEECCCCTTS--G--------GGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCccEEEEcCCCCCC--c--------chhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            589999999887432  1        112234689999999999999887765

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.036  Score=47.82  Aligned_cols=109  Identities=16%  Similarity=0.089  Sum_probs=71.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~Lk~  100 (389)
                      .++.+||=||=|.=.++..|++..  +.++|+.-.+  .++.+.   |.++   .++.+..|. ...||..+..  .+..
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s--~~~~~~---a~~~---~~~~~~~~~~~~~~~~~~~~--~~~~  119 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECN--DGVFQR---LRDW---APRQTHKVIPLKGLWEDVAP--TLPD  119 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECC--HHHHHH---HHHH---GGGCSSEEEEEESCHHHHGG--GSCT
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCC--HHHHHH---HHHH---hhhccccccccccccccccc--cccc
Confidence            456799999999999999998763  3467665444  333332   3333   234444333 3345544332  2345


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV  151 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV  151 (389)
                      ..||.|+|+..+...         .-.|..-...||+.+..+|+|||.+.+
T Consensus       120 ~~fD~i~fD~~~~~~---------~~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         120 GHFDGILYDTYPLSE---------ETWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             TCEEEEEECCCCCBG---------GGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             ccccceeeccccccc---------ccccccCHHHHHHHHHHHcCCCcEEEE
Confidence            789999999877653         113444466899999999999998765

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.84  E-value=0.11  Score=43.21  Aligned_cols=120  Identities=18%  Similarity=0.172  Sum_probs=78.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCcCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      .++++||=+|=|-=++|.+||+..   ..|+|.  |-.++..+   .|++|++.+.- ..++++. -||.++..    ..
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~~~---~~V~av--D~~~~~l~---~a~~n~~~~gl~~~v~~~~-gda~~~~~----~~   98 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAGRV---RRVYAI--DRNPEAIS---TTEMNLQRHGLGDNVTLME-GDAPEALC----KI   98 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS---SEEEEE--ESCHHHHH---HHHHHHHHTTCCTTEEEEE-SCHHHHHT----TS
T ss_pred             CCCCEEEEEECCeEcccccccccc---eEEEEe--cCCHHHHH---HHHHHHHHcCCCcceEEEE-Cchhhccc----cc
Confidence            578899999999989999998753   367664  53333433   47788766432 2455655 47766532    23


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCc
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSL  173 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL  173 (389)
                      ..||.|+.+-+...                 +..+++.+..+|+|+|.+.+....-+  +...+.+.....|+
T Consensus        99 ~~~D~v~~~~~~~~-----------------~~~~~~~~~~~LkpgG~lvi~~~~~e--~~~~~~~~l~~~~~  152 (186)
T d1l3ia_          99 PDIDIAVVGGSGGE-----------------LQEILRIIKDKLKPGGRIIVTAILLE--TKFEAMECLRDLGF  152 (186)
T ss_dssp             CCEEEEEESCCTTC-----------------HHHHHHHHHHTEEEEEEEEEEECBHH--HHHHHHHHHHHTTC
T ss_pred             CCcCEEEEeCcccc-----------------chHHHHHHHHHhCcCCEEEEEeeccc--cHHHHHHHHHHcCC
Confidence            67999999854311                 24678889999999999887654221  23344555555554

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.63  E-value=0.047  Score=50.45  Aligned_cols=114  Identities=15%  Similarity=0.214  Sum_probs=73.5

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .-.+||++|=|+-+-++.++++. +...|++--+|.. -++.++|-.  .+-..+++..++|+++ ||.+--+.   ..+
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~--~~~~~~~d~rv~v~~~-Da~~~l~~---~~~  161 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLK--QTSCGFDDPRAEIVIA-NGAEYVRK---FKN  161 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCH--HHHGGGGCTTEEEEES-CHHHHGGG---CSS
T ss_pred             CCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHH--hhcccccCCCcEEEhh-hHHHHHhc---CCC
Confidence            45689999999999988888754 4567998888843 455566632  2334466677887764 55442211   236


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      +||.||-+.+..-. +.        ..+-.-..||+.|+..|+++|-+.+-
T Consensus       162 ~yDvIi~D~~dp~~-~~--------~~~L~t~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         162 EFDVIIIDSTDPTA-GQ--------GGHLFTEEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             CEEEEEEEC-------------------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEEcCCCCCc-Cc--------hhhhccHHHHHHHHhhcCCCcEEEEe
Confidence            79999999876421 00        11112469999999999999976544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=90.53  E-value=0.51  Score=40.08  Aligned_cols=102  Identities=18%  Similarity=0.099  Sum_probs=66.7

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC----CEEEeccccCCCCCCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG----TCILHGVDATTMELHP   96 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G----v~VlfgVDATkL~~~~   96 (389)
                      -.++++||=||=|.=.++..|++.++  ..+++  .|--+.+.+.   |.++.+   +.|    +.+. .-|++.+.   
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~G--vD~s~~~~~~---ar~~~~---~~gl~~~v~~~-~~d~~~~~---   96 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDHG--ITGTG--IDMSSLFTAQ---AKRRAE---ELGVSERVHFI-HNDAAGYV---   96 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEE--EESCHHHHHH---HHHHHH---HTTCTTTEEEE-ESCCTTCC---
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEE--EecccchhhH---HHHHHH---Hhhccccchhh-hhHHhhcc---
Confidence            46688999999998899999998764  45654  5533333321   344433   333    3343 35887752   


Q ss_pred             CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                        ...+||.|+...=-.-.   .|           ...+|+.+..+|+|||.+.|+
T Consensus        97 --~~~~fD~v~~~~~~~~~---~d-----------~~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_          97 --ANEKCDVAACVGATWIA---GG-----------FAGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             --CSSCEEEEEEESCGGGT---SS-----------SHHHHHHHTTSEEEEEEEEEE
T ss_pred             --ccCceeEEEEEehhhcc---CC-----------HHHHHHHHHHHcCcCcEEEEE
Confidence              34779999976432211   11           247899999999999999886

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=90.48  E-value=0.26  Score=40.99  Aligned_cols=116  Identities=16%  Similarity=0.253  Sum_probs=70.6

Q ss_pred             ccc-CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           17 WIK-HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        17 ~~~-~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      |+. .+..+.+||=+|=|.-+++...+.. |  ..+|+  .|.-.+..+   -+++|++.+. .+.+|.. .|+...-..
T Consensus        34 ~l~~~~~~g~~vLDl~~G~G~~~i~a~~~-g--a~vv~--vD~~~~a~~---~~~~N~~~~~-~~~~v~~-~~~d~~~~~  103 (171)
T d1ws6a1          34 YLRLRYPRRGRFLDPFAGSGAVGLEAASE-G--WEAVL--VEKDPEAVR---LLKENVRRTG-LGARVVA-LPVEVFLPE  103 (171)
T ss_dssp             HHHHHCTTCCEEEEETCSSCHHHHHHHHT-T--CEEEE--ECCCHHHHH---HHHHHHHHHT-CCCEEEC-SCHHHHHHH
T ss_pred             HhhccccCCCeEEEeccccchhhhhhhhc-c--chhhh--cccCHHHHh---hhhHHHHhhc-cccceee-eehhccccc
Confidence            555 4467889999999999988876654 3  46665  565444443   3788888763 3444432 333321111


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      ......+||.|+.|=|-..  +.          .+++..++.  ..+|+++|.|.+.+...
T Consensus       104 ~~~~~~~fD~If~DPPY~~--~~----------~~~l~~l~~--~~ll~~~g~ivie~~~~  150 (171)
T d1ws6a1         104 AKAQGERFTVAFMAPPYAM--DL----------AALFGELLA--SGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             HHHTTCCEEEEEECCCTTS--CT----------THHHHHHHH--HTCEEEEEEEEEEEETT
T ss_pred             ccccCCccceeEEcccccc--CH----------HHHHHHHHH--cCCcCCCeEEEEEecCC
Confidence            1234578999999977321  11          123444443  46899999999877543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.40  E-value=0.42  Score=43.10  Aligned_cols=105  Identities=19%  Similarity=0.158  Sum_probs=64.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      ++++||=||-|-=-.|+.+|++ | +..|+|.-...  .+ +   .|+.+++...-.....+..-|+.++.    +...+
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~-G-a~~V~avd~s~--~~-~---~a~~~~~~~~~~~~i~~i~~~~~~l~----~~~~~  105 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMSS--II-E---MAKELVELNGFSDKITLLRGKLEDVH----LPFPK  105 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESST--HH-H---HHHHHHHHTTCTTTEEEEESCTTTSC----CSSSC
T ss_pred             CcCEEEEeCCCCCHHHHHHHHh-C-CCEEEEEeCCH--HH-H---HHHHHHHHhCccccceEEEeehhhcc----Ccccc
Confidence            5789999999987778777775 3 45677765442  22 1   14444444443333344445666654    34578


Q ss_pred             cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEE
Q 016441          103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVH  150 (389)
Q Consensus       103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIH  150 (389)
                      ||.|+-+--.....+..           .+..++.....+|+|+|.|.
T Consensus       106 ~D~i~se~~~~~~~~e~-----------~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         106 VDIIISEWMGYFLLYES-----------MMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEEEEECCCBTTBSTTC-----------CHHHHHHHHHHHEEEEEEEE
T ss_pred             eeEEEEEecceeeccch-----------hHHHHHHHHHhccCCCeEEE
Confidence            99999875544432221           24456666778999998764

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.29  E-value=0.048  Score=50.92  Aligned_cols=113  Identities=15%  Similarity=0.175  Sum_probs=68.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      +-++||+||=||-+-++.++++. +...|++--.|.. -++.++|-.  .+-..++.-.++|+++ ||.+--.   -..+
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~--~~~~~~~dprv~i~i~-Da~~~l~---~~~~  178 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLP--GMSCGFSHPKLDLFCG-DGFEFLK---NHKN  178 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCT--TTSGGGGCTTEEEECS-CHHHHHH---HCTT
T ss_pred             CCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhch--hhccccCCCCeEEEEc-hHHHHHH---hCCC
Confidence            45689999999999999998753 3457888888843 345556521  1122345555666643 4443211   1247


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      +||.||-+.+..-.  .        ...-.-..||+.|+..|+++|-+.+-
T Consensus       179 ~yDvII~D~~dp~~--~--------~~~L~t~eFy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         179 EFDVIITDSSDPVG--P--------AESLFGQSYYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             CEEEEEECCC-----------------------HHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEEcCCCCCC--c--------chhhhhHHHHHHHHhhcCCCcEEEEe
Confidence            89999999886532  1        12334679999999999998876654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=90.17  E-value=0.51  Score=39.55  Aligned_cols=109  Identities=14%  Similarity=0.191  Sum_probs=66.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .++.+||=||=|.=..+..|++... ..+.-.|..|-.+++.+.   |.+++.........-....|+..+.      ..
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~-~~~~~v~giD~S~~ml~~---A~~~~~~~~~~~~~~~~~~d~~~~~------~~  107 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNIN-QPNVKIIGIDNSQPMVER---CRQHIAAYHSEIPVEILCNDIRHVE------IK  107 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCC-CSSCEEEEECSCHHHHHH---HHHHHHTSCCSSCEEEECSCTTTCC------CC
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhc-CCCCceEEeCCCHHHHHH---HHHHhHhhcccchhhhccchhhccc------cc
Confidence            4567899999988888888888653 223344447855555543   6556654433333333344554432      35


Q ss_pred             CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441          102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                      .+|.|+.++=-. ....+|           ...+|+++..+|+|||.+.+.
T Consensus       108 ~~d~i~~~~~l~-~~~~~d-----------~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         108 NASMVILNFTLQ-FLPPED-----------RIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             SEEEEEEESCGG-GSCGGG-----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceeeEEeeecc-ccChhh-----------HHHHHHHHHHhCCCCceeecc
Confidence            688888864210 001111           237899999999999998886

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=90.00  E-value=0.086  Score=48.67  Aligned_cols=115  Identities=16%  Similarity=0.235  Sum_probs=71.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR  101 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~  101 (389)
                      .-++||++|=|+-+-+..+++.. +..+|++--.|.. -++.++|= ..-|-..+++..++|+++ ||.+.-+.   ...
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f-~~~~~~~~~d~rv~i~~~-Da~~~l~~---~~~  150 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHM-PEWHQGAFDDPRAVLVID-DARAYLER---TEE  150 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHC-HHHHTTGGGCTTEEEEES-CHHHHHHH---CCC
T ss_pred             CcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcC-cccccCccCCCceEEEEc-hHHHHhhh---cCC
Confidence            45689999999999999988754 4568888888743 23334441 111222334445666543 55442111   236


Q ss_pred             CcceEEEcCCCC-CCCCCccchHHHHHhHHH-HHHHHHhhHhcccCCCeEEEE
Q 016441          102 KFDRIIFNFPHA-GFYGKEDNHLLIEMHRSL-VRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus       102 ~FDrIIFNFPH~-G~~gkED~~r~Ir~nr~L-L~~FF~SA~~lL~~~GeIHVT  152 (389)
                      +||.||-+-++. |..+.         ...| -..||+.|++.|+++|-+.+-
T Consensus       151 ~yDvIi~D~~dp~~~~~~---------~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         151 RYDVVIIDLTDPVGEDNP---------ARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             CEEEEEEECCCCBSTTCG---------GGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             cccEEEEeCCCcccccch---------hhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            799999987653 31110         1112 358999999999999976654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.01  E-value=0.35  Score=42.20  Aligned_cols=104  Identities=18%  Similarity=0.253  Sum_probs=69.1

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      -.++++||-||=|.=-.|..||+..+  ..+++  .|..+++.+   .|.+|++.+.-.++.++++ |+....    ...
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g--~~V~~--ie~~~~l~~---~a~~~l~~~g~~nv~~~~g-d~~~g~----~~~  143 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVK--TDVYT--IERIPELVE---FAKRNLERAGVKNVHVILG-DGSKGF----PPK  143 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEE--EESCHHHHH---HHHHHHHHTTCCSEEEEES-CGGGCC----GGG
T ss_pred             cCccceEEEecCCCChhHHHHHHhhC--ceeEE--EeccHHHHH---HHHHHHHHcCCceeEEEEC-ccccCC----ccc
Confidence            45689999999999999998888764  34544  454456654   3788888877666777765 665422    245


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      .+||+|+.+-   +.   +.      ....|        .+.|++||.+.+-+.+.
T Consensus       144 ~pfD~Iiv~~---a~---~~------ip~~l--------~~qL~~gGrLv~pv~~~  179 (215)
T d1jg1a_         144 APYDVIIVTA---GA---PK------IPEPL--------IEQLKIGGKLIIPVGSY  179 (215)
T ss_dssp             CCEEEEEECS---BB---SS------CCHHH--------HHTEEEEEEEEEEECSS
T ss_pred             CcceeEEeec---cc---cc------CCHHH--------HHhcCCCCEEEEEEccC
Confidence            8899999852   21   11      11222        23589999998766543

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.92  E-value=0.13  Score=46.55  Aligned_cols=114  Identities=16%  Similarity=0.112  Sum_probs=70.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhH----HHHHHHHHhCCCEEEeccccCCCCCCC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRA----KSNLDNLKKLGTCILHGVDATTMELHP   96 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A----~~Ni~~Lr~~Gv~VlfgVDATkL~~~~   96 (389)
                      .+-.+||++|=|+.+-+..+++. + ...|++--.|.. -++.++|-..    .+.......-.++|++ -||.+.-.  
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~-~Da~~~l~--  145 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-GDGFEFIK--  145 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-SCHHHHHH--
T ss_pred             CCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE-ChHHHHHh--
Confidence            34568999999999999888763 3 457888777733 3444555321    1122222233456654 35543211  


Q ss_pred             CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                        ..++||.||-+.+....  .        ..+-.-..||+.|++.|+++|-+.+-
T Consensus       146 --~~~~yDvIi~D~~~~~~--~--------~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         146 --NNRGFDVIIADSTDPVG--P--------AKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             --HCCCEEEEEEECCCCC---------------TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             --ccCCCCEEEEeCCCCCC--C--------cccccCHHHHHhhHhhcCCCceEEEe
Confidence              23679999999987532  1        11112358999999999999976544

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.68  E-value=1.6  Score=38.93  Aligned_cols=141  Identities=19%  Similarity=0.210  Sum_probs=87.5

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeccccCCCCCCCCcCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC--ILHGVDATTMELHPDLRT  100 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~--VlfgVDATkL~~~~~Lk~  100 (389)
                      .+++||=+-=|==+=|..||... ....|+|.-.+..        ....-.+.+++.|+.  +....|+....   ....
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~--------R~~~l~~~~~r~g~~~~~~~~~~~~~~~---~~~~  169 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQ--------RLSRVYDNLKRLGMKATVKQGDGRYPSQ---WCGE  169 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTT--------THHHHHHHHHHTTCCCEEEECCTTCTHH---HHTT
T ss_pred             ccceeEeccCccccchhhhhhhh-hhhhhhhhhcchh--------hhhhHhhhhhcccccceeeeccccccch---hccc
Confidence            45677766555555566666543 3356888776642        123333446666754  33333333211   1123


Q ss_pred             CCcceEEEcCCCCCCCC---Ccc------chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHH--HHh
Q 016441          101 RKFDRIIFNFPHAGFYG---KED------NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKE--LAI  169 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~g---kED------~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~--LAa  169 (389)
                      ..||+|+-+=|..|. |   +..      ....+....+|=...+.+|.++|++||.|.-+.|+=.|-...++++  |.+
T Consensus       170 ~~fd~IL~DaPCSg~-G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~  248 (284)
T d1sqga2         170 QQFDRILLDAPCSAT-GVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR  248 (284)
T ss_dssp             CCEEEEEEECCCCCG-GGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             ccccEEEEecccccc-CccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHh
Confidence            679999999999983 3   211      1223455566667778899999999999999999988876655555  444


Q ss_pred             hCCcEEE
Q 016441          170 GSSLSLI  176 (389)
Q Consensus       170 ~aGL~L~  176 (389)
                      ..++.++
T Consensus       249 ~~~~~~~  255 (284)
T d1sqga2         249 TADAELC  255 (284)
T ss_dssp             CTTCEEC
T ss_pred             CCCcEEe
Confidence            4666654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=88.59  E-value=0.52  Score=41.30  Aligned_cols=103  Identities=17%  Similarity=0.208  Sum_probs=64.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441           23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK  102 (389)
Q Consensus        23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~  102 (389)
                      +..+||=||=|.=.|+..|++.. ....+++  .|-.+.+.+.   |.+.     ..++.. .--|+++|.    +....
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~g--iD~s~~~~~~---a~~~-----~~~~~~-~~~d~~~l~----~~~~s  147 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADAL-PEITTFG--LDVSKVAIKA---AAKR-----YPQVTF-CVASSHRLP----FSDTS  147 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTC-TTSEEEE--EESCHHHHHH---HHHH-----CTTSEE-EECCTTSCS----BCTTC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHC-CCCEEEE--ecchHhhhhh---hhcc-----cccccc-eeeehhhcc----CCCCC
Confidence            46689999999999999999875 3344544  5633333221   2211     123332 345888764    45688


Q ss_pred             cceEEEcC-CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHH
Q 016441          103 FDRIIFNF-PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIK  165 (389)
Q Consensus       103 FDrIIFNF-PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe  165 (389)
                      ||.|+.+| ||.                      ++.+..+|+|||.+.|+.-.  |...|++.
T Consensus       148 fD~v~~~~~~~~----------------------~~e~~rvLkpgG~l~~~~p~--~~~l~el~  187 (268)
T d1p91a_         148 MDAIIRIYAPCK----------------------AEELARVVKPGGWVITATPG--PRHLMELK  187 (268)
T ss_dssp             EEEEEEESCCCC----------------------HHHHHHHEEEEEEEEEEEEC--TTTTHHHH
T ss_pred             EEEEeecCCHHH----------------------HHHHHHHhCCCcEEEEEeeC--CcchHHHH
Confidence            99999765 221                      23356789999999998654  23455544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.31  E-value=0.33  Score=39.32  Aligned_cols=119  Identities=17%  Similarity=0.125  Sum_probs=74.2

Q ss_pred             ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      .|+.++-++.+||=+|=|.=+|+...+.. | +.++++.-.|..  ..+   .+++|++.+.-.+-..++.-||.+.-+.
T Consensus         7 n~l~~~~~g~~vlDl~~GtG~~~iea~~r-g-a~~v~~ve~~~~--a~~---~~~~n~~~~~~~~~~~ii~~D~~~~l~~   79 (152)
T d2esra1           7 NMIGPYFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRK--AQA---IIQDNIIMTKAENRFTLLKMEAERAIDC   79 (152)
T ss_dssp             HHHCSCCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHH--HHH---HHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred             HHHHhhCCCCeEEEcCCccCHHHHHHHHh-C-cceeeeehhchh--hhh---hhhhhhhhcccccchhhhcccccccccc
Confidence            46788888999998888888888765543 3 446766655532  222   3567777665545344445588874221


Q ss_pred             CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441           96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV  157 (389)
Q Consensus        96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  157 (389)
                         ...+||.|+.|=|-..           ......+..- . ...+|+++|.|.+.+....
T Consensus        80 ---~~~~fDiIf~DPPy~~-----------~~~~~~l~~i-~-~~~~L~~~g~iiiE~~~~~  125 (152)
T d2esra1          80 ---LTGRFDLVFLDPPYAK-----------ETIVATIEAL-A-AKNLLSEQVMVVCETDKTV  125 (152)
T ss_dssp             ---BCSCEEEEEECCSSHH-----------HHHHHHHHHH-H-HTTCEEEEEEEEEEEETTC
T ss_pred             ---cccccceeEechhhcc-----------chHHHHHHHH-H-HCCCcCCCeEEEEEeCCCC
Confidence               2468999999966321           1222233222 2 2468999999998876543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.18  E-value=0.17  Score=40.59  Aligned_cols=123  Identities=15%  Similarity=0.144  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEecCChhHHHHH-HHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441           21 YSSNHQILLVGEGDFSFSLCL-ALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR   99 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSL-a~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk   99 (389)
                      -.++++||++|-|.--..... +++.|  ..+++|.-+.            +.++.++++|+.....-.-.+........
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~------------~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~   90 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGD------------EKLELAKELGADLVVNPLKEDAAKFMKEK   90 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCH------------HHHHHHHHTTCSEEECTTTSCHHHHHHHH
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCH------------HHhhhhhhcCcceecccccchhhhhcccc
Confidence            457899999999998766554 45554  4677775432            24567788998766443222211110001


Q ss_pred             CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS  179 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~  179 (389)
                      ...+|.||++   +|.   .              .-+..+..+|+++|.|.+.=..+.| ..|++-.+- ..++.+..+.
T Consensus        91 ~~~~~~~v~~---~~~---~--------------~~~~~a~~~l~~~G~i~~~g~~~~~-~~~~~~~~~-~~~~~i~gs~  148 (168)
T d1rjwa2          91 VGGVHAAVVT---AVS---K--------------PAFQSAYNSIRRGGACVLVGLPPEE-MPIPIFDTV-LNGIKIIGSI  148 (168)
T ss_dssp             HSSEEEEEES---SCC---H--------------HHHHHHHHHEEEEEEEEECCCCSSE-EEEEHHHHH-HTTCEEEECC
T ss_pred             cCCCceEEee---cCC---H--------------HHHHHHHHHhccCCceEecccccCC-CCCCHHHHH-HCCcEEEEEe
Confidence            2446666665   232   0              2356777889999998876544444 356666653 3456666643

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=88.00  E-value=0.3  Score=42.87  Aligned_cols=101  Identities=14%  Similarity=0.186  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441           21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT  100 (389)
Q Consensus        21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~  100 (389)
                      -.++++||-||=|.=.+|..||+..   ..|+|.  |..+++.++   |+.|+...  .++.+.++ |+..-  .  ...
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l~---~~V~ai--E~~~~~~~~---A~~~~~~~--~nv~~~~~-d~~~g--~--~~~  132 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSV--EINEKMYNY---ASKLLSYY--NNIKLILG-DGTLG--Y--EEE  132 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEE--ESCHHHHHH---HHHHHTTC--SSEEEEES-CGGGC--C--GGG
T ss_pred             hcccceEEEecCCCCHHHHHHHHHh---cccccc--cccHHHHHH---HHHHHhcc--cccccccC-chhhc--c--hhh
Confidence            4678899999999988998888753   356665  444445443   55554422  34555554 44431  1  234


Q ss_pred             CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441          101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT  156 (389)
Q Consensus       101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  156 (389)
                      .+||+|+.+..-      +.      .-..|        .+.|++||.+.+-.-++
T Consensus       133 ~pfD~Iiv~~a~------~~------ip~~l--------~~qLk~GGrLV~pvg~~  168 (224)
T d1vbfa_         133 KPYDRVVVWATA------PT------LLCKP--------YEQLKEGGIMILPIGVG  168 (224)
T ss_dssp             CCEEEEEESSBB------SS------CCHHH--------HHTEEEEEEEEEEECSS
T ss_pred             hhHHHHHhhcch------hh------hhHHH--------HHhcCCCCEEEEEEcCC
Confidence            789999986321      11      01122        25699999998876554

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.17  E-value=3.9  Score=35.60  Aligned_cols=152  Identities=13%  Similarity=0.009  Sum_probs=87.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCC-CCcC
Q 016441           22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELH-PDLR   99 (389)
Q Consensus        22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~-~~Lk   99 (389)
                      ++.-+||=+|=|.=-=+.+||+... ..+++|+-.+.+ .+.    -|+.|++...-.+ +.+++.-+...+... ....
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~-al~----~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~  133 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDM-CFN----YAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEES  133 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHH-HHH----HHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCC
T ss_pred             cccceEEEeCCCchHHHHHHHHhCC-CccccceecCHH-HHH----HHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcc
Confidence            3445899999999999999998773 568999877743 232    3788888765344 444444333443222 1223


Q ss_pred             CCCcceEEEcCCCCCCCCCccc--hHHHHHh-------------------HHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441          100 TRKFDRIIFNFPHAGFYGKEDN--HLLIEMH-------------------RSLVRDFFRNSSGMLRDGGEVHVSHKTTVP  158 (389)
Q Consensus       100 ~~~FDrIIFNFPH~G~~gkED~--~r~Ir~n-------------------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  158 (389)
                      ..+||.||.|=|..........  .+..+.+                   -..+....+.+..+++..|-+..-+  |..
T Consensus       134 ~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~i--g~~  211 (250)
T d2h00a1         134 EIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCML--GKK  211 (250)
T ss_dssp             SCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEE--SST
T ss_pred             cCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEe--cch
Confidence            4689999999999963111100  0000000                   0135556667777888777553222  221


Q ss_pred             CCcccHHHHHhhCCcEEEEEeeC
Q 016441          159 FSNWNIKELAIGSSLSLIWCSEF  181 (389)
Q Consensus       159 Y~sWnIe~LAa~aGL~L~~~~~F  181 (389)
                      -+.=.|..+.++.|+.=++..+|
T Consensus       212 ~~l~~i~~~L~~~g~~~i~~ie~  234 (250)
T d2h00a1         212 CSLAPLKEELRIQGVPKVTYTEF  234 (250)
T ss_dssp             TSHHHHHHHHHHTTCSEEEEEEE
T ss_pred             hhHHHHHHHHHHcCCCeEEEEEe
Confidence            12224777888888866666655

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=1.9  Score=34.55  Aligned_cols=125  Identities=18%  Similarity=0.205  Sum_probs=80.3

Q ss_pred             CCCCCCeEEEEecCChhHHHHH-HHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCC--
Q 016441           20 HYSSNHQILLVGEGDFSFSLCL-ALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHP--   96 (389)
Q Consensus        20 ~Yss~~rILLVGEGDFSFSlSL-a~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~--   96 (389)
                      ...++++||++|-|-.-...+. +++.| +.+|+++..+            ++.++..+++|+...+..+.....+..  
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~------------~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~   89 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLS------------ATRLSKAKEIGADLVLQISKESPQEIARK   89 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESC------------HHHHHHHHHTTCSEEEECSSCCHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCC------------HHHHHHHHHhCCccccccccccccccccc
Confidence            4567899999999988766665 46655 4589998655            235566778898877766554432211  


Q ss_pred             --CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcE
Q 016441           97 --DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLS  174 (389)
Q Consensus        97 --~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~  174 (389)
                        ...+..+|.||= .  +|.   +              .-+..+.++++++|.|.+.=..+.| ...++..+-. .++.
T Consensus        90 ~~~~~g~g~Dvvid-~--~G~---~--------------~~~~~a~~~~~~gG~iv~~G~~~~~-~~~~~~~~~~-k~l~  147 (171)
T d1pl8a2          90 VEGQLGCKPEVTIE-C--TGA---E--------------ASIQAGIYATRSGGTLVLVGLGSEM-TTVPLLHAAI-REVD  147 (171)
T ss_dssp             HHHHHTSCCSEEEE-C--SCC---H--------------HHHHHHHHHSCTTCEEEECSCCCSC-CCCCHHHHHH-TTCE
T ss_pred             ccccCCCCceEEEe-c--cCC---c--------------hhHHHHHHHhcCCCEEEEEecCCCC-CccCHHHHHH-CCcE
Confidence              012456887553 2  332   1              3477899999999998776554443 3466665544 4688


Q ss_pred             EEEEe
Q 016441          175 LIWCS  179 (389)
Q Consensus       175 L~~~~  179 (389)
                      +..+.
T Consensus       148 i~Gs~  152 (171)
T d1pl8a2         148 IKGVF  152 (171)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            87764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.41  E-value=0.48  Score=38.49  Aligned_cols=96  Identities=17%  Similarity=0.175  Sum_probs=59.8

Q ss_pred             CCCCCCeEEEEe-cCCh-hHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCC-
Q 016441           20 HYSSNHQILLVG-EGDF-SFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHP-   96 (389)
Q Consensus        20 ~Yss~~rILLVG-EGDF-SFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~-   96 (389)
                      ...++++||+.| -|.. ..+..||++.|  ..++||+- +.           +.++.++++|+.-.+  |.++..-.. 
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~-~~-----------~~~~~~~~~Ga~~vi--~~~~~~~~~~   88 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAG-TE-----------EGQKIVLQNGAHEVF--NHREVNYIDK   88 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEES-SH-----------HHHHHHHHTTCSEEE--ETTSTTHHHH
T ss_pred             CCCCCCEEEEEeccccccccccccccccC--cccccccc-cc-----------cccccccccCccccc--ccccccHHHH
Confidence            456789999999 5777 45556778875  57888874 32           234567788986544  443321101 


Q ss_pred             ---CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441           97 ---DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS  152 (389)
Q Consensus        97 ---~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT  152 (389)
                         ...++.+|.|+-.   +|.                  ..+..+.++|+++|.|.+-
T Consensus        89 i~~~t~~~g~d~v~d~---~g~------------------~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          89 IKKYVGEKGIDIIIEM---LAN------------------VNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHHHHCTTCEEEEEES---CHH------------------HHHHHHHHHEEEEEEEEEC
T ss_pred             hhhhhccCCceEEeec---ccH------------------HHHHHHHhccCCCCEEEEE
Confidence               1134668876642   331                  2356677889999988763

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=83.00  E-value=0.77  Score=37.95  Aligned_cols=109  Identities=12%  Similarity=0.092  Sum_probs=66.1

Q ss_pred             cCCCCCCeEEEE--ecCCh-hHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441           19 KHYSSNHQILLV--GEGDF-SFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH   95 (389)
Q Consensus        19 ~~Yss~~rILLV--GEGDF-SFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~   95 (389)
                      ....+++++|++  |-|.. +++.-||++.|  .++|||+..+.        ..++-++.|+++|+.....-|.....+.
T Consensus        24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~--------~~~~~~~~~~~lGad~vi~~~~~~~~~~   93 (189)
T d1gu7a2          24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRP--------NLDEVVASLKELGATQVITEDQNNSREF   93 (189)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCT--------THHHHHHHHHHHTCSEEEEHHHHHCGGG
T ss_pred             hCCCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEeccc--------ccchHHhhhhhccccEEEeccccchhHH
Confidence            345678889998  67887 89999999986  57888764431        2334567788889876654433222111


Q ss_pred             C----C---cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE-ecCCCC
Q 016441           96 P----D---LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS-HKTTVP  158 (389)
Q Consensus        96 ~----~---Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT-Lk~g~P  158 (389)
                      .    .   -.+..+|. +||+  +|.                  ..+..+.++|+++|.+.+- .-.+.|
T Consensus        94 ~~~v~~~~~~~g~~vdv-v~D~--vg~------------------~~~~~~~~~l~~~G~~v~~G~~~~~~  143 (189)
T d1gu7a2          94 GPTIKEWIKQSGGEAKL-ALNC--VGG------------------KSSTGIARKLNNNGLMLTYGGMSFQP  143 (189)
T ss_dssp             HHHHHHHHHHHTCCEEE-EEES--SCH------------------HHHHHHHHTSCTTCEEEECCCCSSCC
T ss_pred             HHHHHHHHhhccCCceE-EEEC--CCc------------------chhhhhhhhhcCCcEEEEECCccCCC
Confidence            0    0   02345655 4554  553                  2345556789999987543 234444